Query 024573
Match_columns 265
No_of_seqs 68 out of 70
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 5.2E-28 1.1E-32 202.7 15.3 163 71-254 2-168 (198)
2 PLN00171 photosystem light-ha 42.4 71 0.0015 31.3 6.2 40 45-84 36-80 (324)
3 smart00550 Zalpha Z-DNA-bindin 33.3 30 0.00065 25.5 1.7 45 70-114 5-51 (68)
4 cd06405 PB1_Mekk2_3 The PB1 do 31.4 27 0.00059 28.0 1.3 35 189-231 3-38 (79)
5 COG0071 IbpA Molecular chapero 27.0 1.1E+02 0.0025 25.2 4.4 53 154-209 60-127 (146)
6 PF05973 Gp49: Phage derived p 25.9 2E+02 0.0043 21.6 5.2 42 95-136 7-50 (91)
7 COG5278 Predicted periplasmic 24.4 1.2E+02 0.0026 27.7 4.3 47 67-115 47-102 (207)
8 TIGR00269 conserved hypothetic 22.8 61 0.0013 25.7 1.9 21 95-115 35-55 (104)
9 PF05015 Plasmid_killer: Plasm 22.4 99 0.0022 24.1 3.0 37 99-135 33-80 (93)
10 COG1937 Uncharacterized protei 20.8 2.5E+02 0.0053 22.7 5.0 37 46-82 33-71 (89)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.96 E-value=5.2e-28 Score=202.70 Aligned_cols=163 Identities=26% Similarity=0.454 Sum_probs=129.2
Q ss_pred hHHHHHHHHhhh-cCCceeeecCCCChhhHHHHHHHHHhhhhcCCCCCCCCC-CccCceEEEEEeccCCCchhhhhhhhc
Q 024573 71 SAKESLLLAFKD-AGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTS-PFLEGRWNFEWFGSGSPGFFVARFIFE 148 (265)
Q Consensus 71 saKe~Ll~a~~d-~rG~~A~~~g~~t~~~R~eI~eli~~LEalNPTP~Pt~s-~lL~G~W~LlyTss~spgLla~rl~~~ 148 (265)
++|++|++++++ .||..| ++++|.+|+++|.+||++||||+|+++ ++|+|+|+|.||++. +.... +-.+
T Consensus 2 ~~K~~Ll~~~~~~~rG~~~------~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~--~~~~~-l~~~ 72 (198)
T PF04755_consen 2 DLKQELLQAVAGTNRGLRA------SPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSP--EIRSL-LQRG 72 (198)
T ss_pred hHHHHHHHHHhccCCCccC------CHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCC--Ccccc-cccc
Confidence 689999999999 589988 999999999999999999999999998 799999999999987 33322 2335
Q ss_pred cCCcccccccceEEEEeCCceEEEEeeee--eccceeEEEEEEeeEEeCCeeeEEEEeeeeecCceeecccChhhHHHhh
Q 024573 149 RFPPTLANLSNMDVVIKDGKANITANFKL--LNSIESKFSFSTKLLVEGPLRLKEEYIEGILESPTVIEETIPEQLKGAF 226 (265)
Q Consensus 149 rlPs~Lv~Lg~I~~~I~~~~~~~~a~v~~--l~~less~SvsAkFEVrSP~RvqvkFeEGilgtP~lie~~lPeqv~~~l 226 (265)
++| .+.+++|+|+||....++.|.+.+ ++.+++.+++.++|++.+|.||+++|+++.++.|.+ +++++
T Consensus 73 ~~~--~~~~~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~--------l~~~l 142 (198)
T PF04755_consen 73 RLP--GVRVGRVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSL--------LKGVL 142 (198)
T ss_pred ccc--cccccceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccce--------eeccc
Confidence 677 689999999998877666666665 566799999999999999999999999999999998 33444
Q ss_pred ccccchhhccChhhHhhhcCCeeecCCc
Q 024573 227 NQAVTTVQQLPAPIRDAISGGLRIPLSK 254 (265)
Q Consensus 227 GQ~i~~lq~l~~~i~~~is~pLKvPl~g 254 (265)
++.-+..+.++....+.. |+++|+++
T Consensus 143 ~~~~~~~~~v~~~~~~~~--~~~~~~~~ 168 (198)
T PF04755_consen 143 GPLKDALNNVPRGISDEL--PVPLPLPG 168 (198)
T ss_pred hhhhhhhhhccccccccc--ccccccCC
Confidence 444445555443333222 44455543
No 2
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=42.43 E-value=71 Score=31.27 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHhh-----cCchhhHHHHhhhhHHHHHHHHhhhcC
Q 024573 45 RLRCKAMVQQAVQ-----GAPAAYAKEMERLSAKESLLLAFKDAG 84 (265)
Q Consensus 45 ~~~~~~~~~~~~~-----g~~a~~a~eme~~saKe~Ll~a~~d~r 84 (265)
.-.|||.-|+.++ ..|-..-+.+-.-+.-++|-+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (324)
T PLN00171 36 ASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETK 80 (324)
T ss_pred CccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhh
Confidence 3589999998764 334444466666677777777777654
No 3
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=33.28 E-value=30 Score=25.49 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhhhcCC--ceeeecCCCChhhHHHHHHHHHhhhhcCC
Q 024573 70 LSAKESLLLAFKDAGG--FEALVAGKTTNMQQIDVNERITGLERLNP 114 (265)
Q Consensus 70 ~saKe~Ll~a~~d~rG--~~A~~~g~~t~~~R~eI~eli~~LEalNP 114 (265)
...++.+|..|++.+| +.+.--.+.-...+.+|+..+..||+.+=
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~ 51 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGK 51 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3567888899988766 77654455556677899999999998764
No 4
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=31.38 E-value=27 Score=27.98 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=22.9
Q ss_pred EeeEEeCCeeeEEEEeeeeecCceeecc-cChhhHHHhhccccc
Q 024573 189 TKLLVEGPLRLKEEYIEGILESPTVIEE-TIPEQLKGAFNQAVT 231 (265)
Q Consensus 189 AkFEVrSP~RvqvkFeEGilgtP~lie~-~lPeqv~~~lGQ~i~ 231 (265)
-|||-++.||+ |+-|+=+-+ ++=..+++.|||..|
T Consensus 3 iKfE~~gEKRI--------i~f~RPvkf~dl~~kv~~afGq~md 38 (79)
T cd06405 3 IKFEHNGEKRI--------IQFPRPVKFKDLQQKVTTAFGQPMD 38 (79)
T ss_pred EEEEecCceEE--------EecCCCccHHHHHHHHHHHhCCeee
Confidence 46777777774 444443332 566677889999986
No 5
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=1.1e+02 Score=25.20 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=35.8
Q ss_pred cccccceEEEEeCCceEEEEeeee---------------eccceeEEEEEEeeEEeCCeeeEEEEeeeeec
Q 024573 154 LANLSNMDVVIKDGKANITANFKL---------------LNSIESKFSFSTKLLVEGPLRLKEEYIEGILE 209 (265)
Q Consensus 154 Lv~Lg~I~~~I~~~~~~~~a~v~~---------------l~~less~SvsAkFEVrSP~RvqvkFeEGilg 209 (265)
-++=.+|+|.+.++++++.++.+- .+..+-.|.+-+..... -++-+|+.|+|.
T Consensus 60 G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~---~~~A~~~nGvL~ 127 (146)
T COG0071 60 GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPE---VIKAKYKNGLLT 127 (146)
T ss_pred CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccccc---ceeeEeeCcEEE
Confidence 455588999999999998888864 22233444454444433 388899999874
No 6
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=25.88 E-value=2e+02 Score=21.61 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHHhhhhcCCCCCCCCCC-cc-CceEEEEEeccC
Q 024573 95 TNMQQIDVNERITGLERLNPTPRPTTSP-FL-EGRWNFEWFGSG 136 (265)
Q Consensus 95 t~~~R~eI~eli~~LEalNPTP~Pt~s~-lL-~G~W~LlyTss~ 136 (265)
++..|++|...+..|+...|...+--.- += +|-|+|.....+
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 5678899999999999988654444443 44 699999987654
No 7
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.36 E-value=1.2e+02 Score=27.72 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=35.8
Q ss_pred HhhhhHHHHHHHHhhhc----CCceeeecCCCC-----hhhHHHHHHHHHhhhhcCCC
Q 024573 67 MERLSAKESLLLAFKDA----GGFEALVAGKTT-----NMQQIDVNERITGLERLNPT 115 (265)
Q Consensus 67 me~~saKe~Ll~a~~d~----rG~~A~~~g~~t-----~~~R~eI~eli~~LEalNPT 115 (265)
++.+.++..|+.++.+. ||+ |+||+.+ .+.+.++++++.+|+++==+
T Consensus 47 ~~~~~a~~~l~s~~~~~esgqRGY--LLTG~~~yL~py~~a~~~~~~~~~~l~~l~~d 102 (207)
T COG5278 47 QQVLAAALDLLSAVSDAESGQRGY--LLTGNDEYLEPYEEATEELDQKLEELRALTAD 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcce--eecCCHhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777777777773 898 8899865 56788899999999887433
No 8
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=22.83 E-value=61 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=18.7
Q ss_pred ChhhHHHHHHHHHhhhhcCCC
Q 024573 95 TNMQQIDVNERITGLERLNPT 115 (265)
Q Consensus 95 t~~~R~eI~eli~~LEalNPT 115 (265)
....|.++-+++..||+.||.
T Consensus 35 ~~a~R~~~k~~L~~LE~~~P~ 55 (104)
T TIGR00269 35 SLSVRARIRDFLYDLENKKPG 55 (104)
T ss_pred CCCchHHHHHHHHHHHHHCcC
Confidence 367899999999999999995
No 9
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=22.35 E-value=99 Score=24.06 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCC-----------ccCceEEEEEecc
Q 024573 99 QIDVNERITGLERLNPTPRPTTSP-----------FLEGRWNFEWFGS 135 (265)
Q Consensus 99 R~eI~eli~~LEalNPTP~Pt~s~-----------lL~G~W~LlyTss 135 (265)
|.+..+.+..+|+++.-|..--.+ =+||+|+|.|.-.
T Consensus 33 ~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~~~~RliF~~~ 80 (93)
T PF05015_consen 33 RLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRINGNWRLIFRFE 80 (93)
T ss_pred HHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeCCCEEEEEEEe
Confidence 344445555566666554322111 3667777776643
No 10
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=2.5e+02 Score=22.68 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=28.4
Q ss_pred hhHHHHHHH--HhhcCchhhHHHHhhhhHHHHHHHHhhh
Q 024573 46 LRCKAMVQQ--AVQGAPAAYAKEMERLSAKESLLLAFKD 82 (265)
Q Consensus 46 ~~~~~~~~~--~~~g~~a~~a~eme~~saKe~Ll~a~~d 82 (265)
.-|...+|| |+.|+--..+.++=..-+++.+..+..+
T Consensus 33 ~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~~cv~~a~~~ 71 (89)
T COG1937 33 RDCIDVLQQIAAVRGALNGLMREVLEEHLKECVKRAVED 71 (89)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 369999999 6668888888888777777777776663
Done!