Query 024573
Match_columns 265
No_of_seqs 68 out of 70
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 10:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 33.2 15 0.00052 29.5 1.3 39 185-231 7-46 (103)
2 1oyi_A Double-stranded RNA-bin 33.0 13 0.00046 28.1 1.0 49 63-112 9-57 (82)
3 2jrh_A Mitogen-activated prote 28.3 25 0.00086 27.8 1.8 36 188-231 6-42 (94)
4 1xmk_A Double-stranded RNA-spe 26.0 27 0.00091 26.0 1.5 46 66-111 6-52 (79)
5 3g5o_B Uncharacterized protein 25.3 78 0.0027 23.5 4.0 21 95-116 34-55 (102)
6 2c60_A Human mitogen-activated 24.9 32 0.0011 27.9 1.9 39 185-231 30-69 (111)
7 2jvf_A De novo protein M7; tet 24.1 1.1E+02 0.0038 23.7 4.7 43 64-109 28-72 (96)
8 3gqu_A NOP5P protein; RNA bind 23.4 1.2E+02 0.0041 26.0 5.3 60 55-120 97-157 (169)
9 1xnl_A ASLV/FP, membrane prote 23.3 26 0.00088 22.4 0.8 17 55-71 11-28 (29)
10 4fei_A Heat shock protein-rela 23.0 1.2E+02 0.0042 22.3 4.7 60 148-209 22-88 (102)
11 2npt_B Mitogen-activated prote 21.6 40 0.0014 27.0 1.8 39 185-231 19-58 (100)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.20 E-value=15 Score=29.49 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEEEeeEEeCCeeeEEEEeeeeecCceeecc-cChhhHHHhhccccc
Q 024573 185 FSFSTKLLVEGPLRLKEEYIEGILESPTVIEE-TIPEQLKGAFNQAVT 231 (265)
Q Consensus 185 ~SvsAkFEVrSP~RvqvkFeEGilgtP~lie~-~lPeqv~~~lGQ~i~ 231 (265)
..+.-|||.++.+|+ |+-|+=+.+ ++=..++++|||.+|
T Consensus 7 ~dvRiKfE~~GEkRI--------i~f~RPv~f~eL~~Kv~~~fGq~ld 46 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRI--------LQFPRPVKLEDLRSKAKIAFGQSMD 46 (103)
T ss_dssp CEEEEEEEETTEEEE--------EEEESSCCHHHHHHHHHHHHSSCEE
T ss_pred CcEEEEEEecCeEEE--------EeccCCccHHHHHHHHHHHhCCeee
Confidence 345667888888875 444444443 677788999999985
No 2
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=33.04 E-value=13 Score=28.13 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=33.3
Q ss_pred hHHHHhhhhHHHHHHHHhhhcCCceeeecCCCChhhHHHHHHHHHhhhhc
Q 024573 63 YAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERL 112 (265)
Q Consensus 63 ~a~eme~~saKe~Ll~a~~d~rG~~A~~~g~~t~~~R~eI~eli~~LEal 112 (265)
|-.||+-.+.++.+|+.++. .|+.+.--++.=.-.|..|+..+..||+-
T Consensus 9 ~~~d~~~~~~~~~IL~lL~~-~g~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 9 YIDERSNAEIVCEAIKTIGI-EGATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp ----CCSHHHHHHHHHHHSS-STEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34788888999999999994 56555323333344678999999999873
No 3
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=28.32 E-value=25 Score=27.83 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=23.0
Q ss_pred EEeeEEeCCeeeEEEEeeeeecCceeecc-cChhhHHHhhccccc
Q 024573 188 STKLLVEGPLRLKEEYIEGILESPTVIEE-TIPEQLKGAFNQAVT 231 (265)
Q Consensus 188 sAkFEVrSP~RvqvkFeEGilgtP~lie~-~lPeqv~~~lGQ~i~ 231 (265)
.-|||-++.+|+ |.-|+=+-+ ++=..++++|||.+|
T Consensus 6 RIKfE~~gEKRI--------i~f~RPvkf~dl~qkv~~afGq~ld 42 (94)
T 2jrh_A 6 RIKFEHNGERRI--------IAFSRPVKYEDVEHKVTTVFGQPLD 42 (94)
T ss_dssp EEEEEETTEEEE--------EEECSSCCHHHHHHHHHHHHCSSEE
T ss_pred EEEEEecCceEE--------EecCCCccHHHHHHHHHHHhCCeee
Confidence 345666666664 444444442 566778889999985
No 4
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=26.00 E-value=27 Score=26.02 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=35.8
Q ss_pred HHhhhhHHHHHHHHhhhcCCceeeecCCCChhhHH-HHHHHHHhhhh
Q 024573 66 EMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQI-DVNERITGLER 111 (265)
Q Consensus 66 eme~~saKe~Ll~a~~d~rG~~A~~~g~~t~~~R~-eI~eli~~LEa 111 (265)
+|+-.+-++.+|+.++..++..|..-++.=.-... +|+..+..||+
T Consensus 6 ~~~~~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 6 SLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 45555779999999999888887555555556777 89999999998
No 5
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=25.26 E-value=78 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=14.6
Q ss_pred ChhhHHHHHHHH-HhhhhcCCCC
Q 024573 95 TNMQQIDVNERI-TGLERLNPTP 116 (265)
Q Consensus 95 t~~~R~eI~eli-~~LEalNPTP 116 (265)
....+..|.+.| ..|. .||.+
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~~ 55 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPLR 55 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTTT
T ss_pred CHHHHHHHHHHHHHHHH-hCccc
Confidence 345666788888 7774 68874
No 6
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=24.88 E-value=32 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=25.5
Q ss_pred EEEEEeeEEeCCeeeEEEEeeeeecCceeec-ccChhhHHHhhccccc
Q 024573 185 FSFSTKLLVEGPLRLKEEYIEGILESPTVIE-ETIPEQLKGAFNQAVT 231 (265)
Q Consensus 185 ~SvsAkFEVrSP~RvqvkFeEGilgtP~lie-~~lPeqv~~~lGQ~i~ 231 (265)
..+.-|||-++.+|+ |.-|+=+- .++=..++++|||.+|
T Consensus 30 ~dvRIKfE~~gEKRI--------iqf~RPvkf~dl~qkv~~afGq~ld 69 (111)
T 2c60_A 30 SDVRIKFEHNGERRI--------IAFSRPVKYEDVEHKVTTVFGQPLD 69 (111)
T ss_dssp CCEEEEEEETTEEEE--------EEECSSCCHHHHHHHHHHHHSSCCE
T ss_pred cceEEEEEecCceEE--------EecCCCccHHHHHHHHHHHhCCeee
Confidence 345567777777775 33344333 2566778889999985
No 7
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=24.09 E-value=1.1e+02 Score=23.66 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHhhhhHHHHHHHHhhh--cCCceeeecCCCChhhHHHHHHHHHhh
Q 024573 64 AKEMERLSAKESLLLAFKD--AGGFEALVAGKTTNMQQIDVNERITGL 109 (265)
Q Consensus 64 a~eme~~saKe~Ll~a~~d--~rG~~A~~~g~~t~~~R~eI~eli~~L 109 (265)
.+|+|| +-++|-.++.. +|.+..+++.. .|+|..+..|+|+.|
T Consensus 28 gkeler--alqelekalaragarnvqitisae-ndeqakelleliarl 72 (96)
T 2jvf_A 28 GKELER--ALQELEKALARAGARNVQITISAE-NDEQAKELLELIARL 72 (96)
T ss_dssp SSHHHH--HHHHHHHHHHHHTCSEEEEEEECS-SHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHHHhccccceEEEEEec-ChHHHHHHHHHHHHH
Confidence 366665 34455555554 57777767665 678888899999875
No 8
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=23.44 E-value=1.2e+02 Score=25.99 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=34.3
Q ss_pred HhhcCchhhHHHH-hhhhHHHHHHHHhhhcCCceeeecCCCChhhHHHHHHHHHhhhhcCCCCCCCC
Q 024573 55 AVQGAPAAYAKEM-ERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT 120 (265)
Q Consensus 55 ~~~g~~a~~a~em-e~~saKe~Ll~a~~d~rG~~A~~~g~~t~~~R~eI~eli~~LEalNPTP~Pt~ 120 (265)
.++..|.-+-.-+ --+++|-+|-.-+.-..|- ...++-|.+|.+.|.+|+..||.|.|..
T Consensus 97 lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~------~~G~~lreeie~riekl~e~~~~pp~~~ 157 (169)
T 3gqu_A 97 AINRSPWWQRGKIARALAGKLAIAARVDYFSGE------YIAEELKKELEARIKEIKEKYPRPPKRR 157 (169)
T ss_dssp HHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC------CCCTTHHHHHHHHHHHCCCSCCC-----
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc------ccCHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3444555444333 4456666654333222332 1257899999999999999999998764
No 9
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.29 E-value=26 Score=22.42 Aligned_cols=17 Identities=47% Similarity=0.655 Sum_probs=12.6
Q ss_pred HhhcCchhhH-HHHhhhh
Q 024573 55 AVQGAPAAYA-KEMERLS 71 (265)
Q Consensus 55 ~~~g~~a~~a-~eme~~s 71 (265)
+.-|.+|+.| +|+||+.
T Consensus 11 faPGvaAAqAL~eIERLa 28 (29)
T 1xnl_A 11 LAPGVAAAQALREIERLA 28 (29)
T ss_dssp SSTTTHHHHHHHHHHHHC
T ss_pred hCccHHHHHHHHHHHHhc
Confidence 4557777777 9999874
No 10
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=23.01 E-value=1.2e+02 Score=22.25 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=35.5
Q ss_pred ccCCcccccccceEEEEeCCceEEEEeeeeeccc------eeEEEEEEeeE-EeCCeeeEEEEeeeeec
Q 024573 148 ERFPPTLANLSNMDVVIKDGKANITANFKLLNSI------ESKFSFSTKLL-VEGPLRLKEEYIEGILE 209 (265)
Q Consensus 148 ~rlPs~Lv~Lg~I~~~I~~~~~~~~a~v~~l~~l------ess~SvsAkFE-VrSP~RvqvkFeEGilg 209 (265)
-.+| -++-.+|++.++++.+++.++.+--... .++|.-+-.|- -.-+..++-+|+.|+|.
T Consensus 22 ~~lP--G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL~ 88 (102)
T 4fei_A 22 LDVP--GVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVLT 88 (102)
T ss_dssp EECT--TCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEEE
T ss_pred EECC--CCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEEE
Confidence 3678 6778999999999998888766321100 12232222221 12345677788888763
No 11
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.60 E-value=40 Score=26.96 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=24.8
Q ss_pred EEEEEeeEEeCCeeeEEEEeeeeecCceeec-ccChhhHHHhhccccc
Q 024573 185 FSFSTKLLVEGPLRLKEEYIEGILESPTVIE-ETIPEQLKGAFNQAVT 231 (265)
Q Consensus 185 ~SvsAkFEVrSP~RvqvkFeEGilgtP~lie-~~lPeqv~~~lGQ~i~ 231 (265)
..+.-|||-++.+|+ |.-|+=+- .++=..++++|||.+|
T Consensus 19 ~dvRIKfE~~gEkRI--------i~f~RPv~f~el~~kv~~afGq~ld 58 (100)
T 2npt_B 19 NDVRVKFEHRGEKRI--------LQFPRPVKLEDLRSKAKIAFGQSMD 58 (100)
T ss_dssp CCEEEEEEETTEEEE--------EEECSSCCHHHHHHHHHHHHTSCEE
T ss_pred cceEEEEEecCceEE--------EecCCCccHHHHHHHHHHHhCCeee
Confidence 344556777777765 33344333 2566778889999985
Done!