Query 024573
Match_columns 265
No_of_seqs 68 out of 70
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 10:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024573.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024573hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rz4a2 a.118.1.18 (A:2-131) E 35.7 8 0.00058 30.0 2.0 23 96-118 4-26 (130)
2 d2c60a1 d.15.2.2 (A:43-122) Mi 32.5 10 0.00073 27.5 2.0 35 189-231 5-40 (80)
3 d2nptb1 d.15.2.2 (B:42-123) Mi 30.9 11 0.00077 27.5 1.9 35 189-231 5-40 (82)
4 d2a0aa1 b.60.1.2 (A:1-131) Der 28.1 13 0.00094 27.5 2.0 71 124-196 4-75 (131)
5 d1ggla_ b.60.1.2 (A:) Cellular 26.7 90 0.0066 22.5 6.8 69 123-194 3-73 (134)
6 d2gyc31 a.108.1.1 (3:2-48) Rib 25.5 26 0.0019 23.0 2.9 26 73-112 3-28 (47)
7 d1b56a_ b.60.1.2 (A:) Epiderma 24.3 26 0.0019 25.8 3.2 71 123-196 4-76 (133)
8 d2gsqa1 a.45.1.1 (A:76-202) Cl 20.6 30 0.0022 23.1 2.6 22 91-113 2-23 (127)
9 d1lpja_ b.60.1.2 (A:) Cellular 20.3 51 0.0037 24.3 4.1 70 123-195 3-74 (133)
10 d1kqwa_ b.60.1.2 (A:) Cellular 19.1 50 0.0037 24.0 3.8 69 124-195 4-74 (134)
No 1
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.72 E-value=8 Score=29.96 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHhhhhcCCCCCC
Q 024573 96 NMQQIDVNERITGLERLNPTPRP 118 (265)
Q Consensus 96 ~~~R~eI~eli~~LEalNPTP~P 118 (265)
+..|+.|.+++.++||.||---|
T Consensus 4 e~~~~~i~~lL~gidRYNPe~l~ 26 (130)
T d1rz4a2 4 EQMRANVGKLLKGIDRYNPENLA 26 (130)
T ss_dssp HHHHHHHHHHHHSGGGGCGGGHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHH
Confidence 67899999999999999996544
No 2
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.55 E-value=10 Score=27.52 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=22.5
Q ss_pred EeeEEeCCeeeEEEEeeeeecCceeecc-cChhhHHHhhccccc
Q 024573 189 TKLLVEGPLRLKEEYIEGILESPTVIEE-TIPEQLKGAFNQAVT 231 (265)
Q Consensus 189 AkFEVrSP~RvqvkFeEGilgtP~lie~-~lPeqv~~~lGQ~i~ 231 (265)
-|||-++.+|+ |.-|+=+-+ ++=..++.+|||.+|
T Consensus 5 VKfE~~gEkRI--------i~f~RPv~~~dl~~kv~~afGq~ld 40 (80)
T d2c60a1 5 IKFEHNGERRI--------IAFSRPVKYEDVEHKVTTVFGQPLD 40 (80)
T ss_dssp EEEEETTEEEE--------EEECSSCCHHHHHHHHHHHHSSCCE
T ss_pred EEEEecCceEE--------EecCCCccHHHHHHHHHHHhCCeee
Confidence 45666666654 444444443 566788889999985
No 3
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.89 E-value=11 Score=27.49 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=22.4
Q ss_pred EeeEEeCCeeeEEEEeeeeecCceeecc-cChhhHHHhhccccc
Q 024573 189 TKLLVEGPLRLKEEYIEGILESPTVIEE-TIPEQLKGAFNQAVT 231 (265)
Q Consensus 189 AkFEVrSP~RvqvkFeEGilgtP~lie~-~lPeqv~~~lGQ~i~ 231 (265)
-|||-++.+|+ |.-|+=.-+ ++=..++.+|||..|
T Consensus 5 VKfE~~gEkRI--------i~f~RPv~~~dl~~kv~~afGq~ld 40 (82)
T d2nptb1 5 VKFEHRGEKRI--------LQFPRPVKLEDLRSKAKIAFGQSMD 40 (82)
T ss_dssp EEEEETTEEEE--------EEECSSCCHHHHHHHHHHHHTSCEE
T ss_pred EEEEecCceEE--------EecCCCccHHHHHHHHHHHhCCeee
Confidence 45666666654 444444442 566788889999985
No 4
>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite (Dermatophagoides farinae) [TaxId: 6954]}
Probab=28.09 E-value=13 Score=27.47 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=34.3
Q ss_pred cCceEEEEEeccCCCchhhhhhhhccCCcccccccceEEEE-eCCceEEEEeeeeeccceeEEEEEEeeEEeCC
Q 024573 124 LEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVI-KDGKANITANFKLLNSIESKFSFSTKLLVEGP 196 (265)
Q Consensus 124 L~G~W~LlyTss~spgLla~rl~~~rlPs~Lv~Lg~I~~~I-~~~~~~~~a~v~~l~~less~SvsAkFEVrSP 196 (265)
|+|+|.|. .+...=++|.+ ++..-.-..+++..+.++.| .++..............+.+|.+.-.||-..+
T Consensus 4 ~~Gtwkl~-~seNfdefLk~-lGv~~~~Rk~a~~~~p~~~I~~~Gd~~tikt~t~~kt~~~~F~lG~efee~~~ 75 (131)
T d2a0aa1 4 IEGKYKLE-KSEKFDEFLDK-LGVGFMVKTAAKTLKPTFEVAIENDQYIFRSLSTFKNTEAKFKLGEEFEEDRA 75 (131)
T ss_dssp CCEEEEEC-CCCSHHHHHHH-HTCCHHHHTGGGTTCCEEEEEECSSCEEEEECCTTSCEEEEECSSCCEEEEET
T ss_pred ccEEEEEE-eccCHHHHHHH-cCCCHHHHHhhhcCCceEEEEEcCCEEEEEEeccCeeEEEEEECCCcEEEeCC
Confidence 79999986 34333344444 34322221234444444333 33333333333333344566777777766544
No 5
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.73 E-value=90 Score=22.47 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=35.7
Q ss_pred ccCceEEEEEeccCCCchhhhhhhhccCCcccccccceEEE--EeCCceEEEEeeeeeccceeEEEEEEeeEEe
Q 024573 123 FLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVV--IKDGKANITANFKLLNSIESKFSFSTKLLVE 194 (265)
Q Consensus 123 lL~G~W~LlyTss~spgLla~rl~~~rlPs~Lv~Lg~I~~~--I~~~~~~~~a~v~~l~~less~SvsAkFEVr 194 (265)
=+.|+|.|.=. ...=++|.+ ++..-+=..+++....++. .+++..+... .......+.+|.+.-.||..
T Consensus 3 ~f~Gtwkl~~s-ENfd~fLk~-lGv~~~~Rk~~~~~~p~~ei~~~Gd~~ti~t-~t~~k~~~~~F~lg~efee~ 73 (134)
T d1ggla_ 3 NLTGYYRFVSQ-KNMEDYLQA-LNISLAVRKIALLLKPDKEIEHQGNHMTVRT-LSTFRNYTVQFDVGVEFEED 73 (134)
T ss_dssp SCCEEEEEEEE-ECHHHHHHH-TTCCTTTTTTGGGCCCEEEEEECSSEEEEEE-ECSSCCEEEEEETTSCEEEE
T ss_pred CcCEEEEEEec-cCHHHHHHH-cCCCHHHHHHHhcCCCeEEEEEeCCEEEEEE-EccceEEEEEEEcCCcEEEe
Confidence 37899999853 332344444 4443332224444444433 3444433322 22334456778777888764
No 6
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=25.52 E-value=26 Score=23.03 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCceeeecCCCChhhHHHHHHHHHhhhhc
Q 024573 73 KESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERL 112 (265)
Q Consensus 73 Ke~Ll~a~~d~rG~~A~~~g~~t~~~R~eI~eli~~LEal 112 (265)
|+++|++|. ++.--||.|+|..+|.+
T Consensus 3 ke~Ileaia--------------~MSVmdvveLi~amEEK 28 (47)
T d2gyc31 3 KDQIIEAVA--------------AMSVMDVVELISAMEEK 28 (47)
T ss_dssp HHHHHHHHH--------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------HhhHHHHHHHHHHHHHH
Confidence 566677665 45556777777777754
No 7
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.34 E-value=26 Score=25.79 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred ccCceEEEEEeccCCCchhhhhhhhccCCcccccccceEEEE--eCCceEEEEeeeeeccceeEEEEEEeeEEeCC
Q 024573 123 FLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVI--KDGKANITANFKLLNSIESKFSFSTKLLVEGP 196 (265)
Q Consensus 123 lL~G~W~LlyTss~spgLla~rl~~~rlPs~Lv~Lg~I~~~I--~~~~~~~~a~v~~l~~less~SvsAkFEVrSP 196 (265)
-|+|+|.|.= +...=++|.+ ++..-+=..+++..+.++.| +.+..+ .-........+..|.+--.||-..+
T Consensus 4 ~l~Gtwkl~~-seNfd~fLka-lGv~~~~Rk~a~~~~p~~~i~~~Gd~~t-ikt~s~~kt~~~~F~~Geefee~~~ 76 (133)
T d1b56a_ 4 QLEGRWRLVD-SKGFDEYMKE-LGVGIALRKMGAMAKPDCIITCDGKNLT-IKTESTLKTTQFSCTLGEKFEETTA 76 (133)
T ss_dssp GGCEEEEEEE-CCSHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEE-EEEECSSCEEEEEEETTCCEEEECT
T ss_pred HceEEEEEEe-ccCHHHHHHH-hCCCHHHHHHhhcCCceEEEEEeCCEEE-EEEEecCeEEEEEEECCccEEEeCC
Confidence 4899999973 3332344433 33222211133444444333 333322 1111212223455666555665555
No 8
>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}
Probab=20.60 E-value=30 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.4
Q ss_pred cCCCChhhHHHHHHHHHhhhhcC
Q 024573 91 AGKTTNMQQIDVNERITGLERLN 113 (265)
Q Consensus 91 ~g~~t~~~R~eI~eli~~LEalN 113 (265)
+|+ |+.+|+.|++.+..++++.
T Consensus 2 ~Gk-t~~e~a~id~~~~~~~d~~ 23 (127)
T d2gsqa1 2 DGK-TSLEKYRVDEITETLQDIF 23 (127)
T ss_dssp SCS-SHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHH
Confidence 577 8889999998888877653
No 9
>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.25 E-value=51 Score=24.31 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=33.9
Q ss_pred ccCceEEEEEeccCCCchhhhhhhhccCCcccccccceE--EEEeCCceEEEEeeeeeccceeEEEEEEeeEEeC
Q 024573 123 FLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMD--VVIKDGKANITANFKLLNSIESKFSFSTKLLVEG 195 (265)
Q Consensus 123 lL~G~W~LlyTss~spgLla~rl~~~rlPs~Lv~Lg~I~--~~I~~~~~~~~a~v~~l~~less~SvsAkFEVrS 195 (265)
=+.|.|.|.=. ...=++|.+ ++..-.-..+++..+.+ |+.+.+..+ .-........+.+|.+.-.||...
T Consensus 3 ~f~Gtwkl~~s-eNfd~fLk~-lGv~~~~Rk~a~~~~pt~~I~~~Gd~~~-ikt~t~~kt~~~~F~lGeefee~~ 74 (133)
T d1lpja_ 3 DLSGTWTLLSS-DNFEGYMLA-LGIDFATRKIAKLLKPQKVIEQNGDSFT-IHTNSSLRNYFVKFKVGEEFDEDN 74 (133)
T ss_dssp CCCEEEEEEEE-ESHHHHHHH-HTCCHHHHHHHTTCCCEEEEEEETTEEE-EEEECSSCCEEEEEETTCCEEEEC
T ss_pred cccEEEEEEec-cCHHHHHHH-cCCCHHHHHHhhcCCCeEEEEEcCCEEE-EEEEccceEEEEEEECCCcEEEec
Confidence 47899999743 332334433 33222211123333333 333444333 333333344467788888887654
No 10
>d1kqwa_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=19.13 E-value=50 Score=23.96 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=34.5
Q ss_pred cCceEEEEEeccCCCchhhhhhhhccCCcccccccceE--EEEeCCceEEEEeeeeeccceeEEEEEEeeEEeC
Q 024573 124 LEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMD--VVIKDGKANITANFKLLNSIESKFSFSTKLLVEG 195 (265)
Q Consensus 124 L~G~W~LlyTss~spgLla~rl~~~rlPs~Lv~Lg~I~--~~I~~~~~~~~a~v~~l~~less~SvsAkFEVrS 195 (265)
+.|+|.|.= +...=++|.+ ++..-+=..+++....+ |..+.+..+.. ........+.+|.+.-.||...
T Consensus 4 f~Gtwkl~~-sENfdefLk~-lGv~~~~rk~~~~~~p~~~i~~~Gd~~tik-t~t~~kt~~~~F~lG~efee~~ 74 (134)
T d1kqwa_ 4 FNGTWEMLS-NDNFEDVMKA-LDIDFATRKIAVHLKQTKVIVQNGDKFETK-TLSTFRNYEVNFVIGEEFDEQT 74 (134)
T ss_dssp CCEEEEEEE-EESHHHHHHH-TTCCHHHHHHHHTCCCEEEEEEETTEEEEE-EECSSCCEEEEEETTCCEEEEC
T ss_pred cCEEEEEEe-ccCHHHHHHH-cCCCHHHHhHhhcCCccEEEEEeCCEEEEE-EEcCCeeEEEEEECCCceeEEc
Confidence 789999954 3332334433 33221111123333333 33354444432 2233344467888888888764
Done!