BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024576
(265 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 217/269 (80%), Gaps = 6/269 (2%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQEAPEGLTK +ADE R+KGK+LLPICKLAKNGVY+TLVRDVR AFE
Sbjct: 240 MLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKNLLPICKLAKNGVYITLVRDVRAAFE 299
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP-PSFS 119
GS LVKV+CKGM SDYKKLGAKLK+LVPCVLLSFDDEQILMWRG+DWKSMYPE PS S
Sbjct: 300 GSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGQDWKSMYPEARPSIS 359
Query: 120 NPVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRAIESTKALVLDEINLGPDD 176
P +LDIA +D SG DD + SSPKM+ LWK A+ES KA++LDEI+LGPD
Sbjct: 360 FPAELDIASGSDDSGKSDDDCDNSDAKILSSSPKMMLLWKHALESNKAILLDEIDLGPDA 419
Query: 177 LLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDD 236
LL KVEEFEGISQA EHSYPALV+S EDG+S+S++ +ED S SEN+ ED+ Y +D++ D
Sbjct: 420 LLTKVEEFEGISQATEHSYPALVMSSEDGSSNSISTFEDDSHSENFSEDDMYSDDEYYDS 479
Query: 237 DEFYDSDSSDVVPLGSLPVDHIAERLQRK 265
+ F + ++S P GSL +D IAE+L +K
Sbjct: 480 ESFEELETS--APPGSLSIDLIAEKLDKK 506
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 221/272 (81%), Gaps = 7/272 (2%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQ+APEGLTK EADE R KGK+LLPICKLAKNGVY+TLVRDVRNAFE
Sbjct: 290 MLWKPAAPVYPKLIQDAPEGLTKAEADEFREKGKNLLPICKLAKNGVYITLVRDVRNAFE 349
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++CKGM+ SDYKKLGAKLKELVPCVLLSFDDE ILMWRG++WK MYPE PS S
Sbjct: 350 GSPLVKIDCKGMNPSDYKKLGAKLKELVPCVLLSFDDEHILMWRGQNWKPMYPEVPSVST 409
Query: 121 PVDLDIAGDADGSGTPSDDPSQ---GTIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
P D +D SG DDPS +RSSPKM+SLW+ AIES+KA++LD+I+LGPDDL
Sbjct: 410 PDAADFTSGSDDSGKFEDDPSNRDANVVRSSPKMMSLWECAIESSKAILLDQIDLGPDDL 469
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
L+KVEEFE ISQA EHSYPA++LS EDGA++++A + D S S ++ E++ DD +DD
Sbjct: 470 LRKVEEFECISQATEHSYPAVILSSEDGANNTVAAFGDDSLSGSFTEEDDTYTDDEYEDD 529
Query: 238 EFYDSDSSD----VVPLGSLPVDHIAERLQRK 265
E+YDSDS + VPLGSLPVD +AERL ++
Sbjct: 530 EYYDSDSFEEVDTAVPLGSLPVDRLAERLHQE 561
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/270 (66%), Positives = 208/270 (77%), Gaps = 14/270 (5%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQEAPEGLTK EADELR KG +L+PIC+L KNGVY++LV+DVR+AFE
Sbjct: 294 MLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGXNLIPICRLVKNGVYISLVKDVRDAFE 353
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++CKGMHASDYKK+GAKLKE VPCVLLSFDDEQIL WRG WKSMY PSF
Sbjct: 354 GSPLVKIDCKGMHASDYKKIGAKLKESVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLI 413
Query: 121 PVDLDIAGDADGSGTPSDDPSQ---GTIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
PV D+A +GSG P + + + +SPKM+SLWK AIES+KAL+LDEI LGPD L
Sbjct: 414 PVVADVASGLEGSGVPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDEIGLGPDAL 473
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AE+E G SE+Y EDE Y NDDD
Sbjct: 474 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEHE-GYNSEDYSEDEMY-----NDDD 527
Query: 238 EFYDSDSS-----DVVPLGSLPVDHIAERL 262
+ Y + S VPLGSLPVD +A++L
Sbjct: 528 DEYLVNESLEEMESPVPLGSLPVDLLAKQL 557
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/269 (67%), Positives = 211/269 (78%), Gaps = 11/269 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQEAPEGLTK EADELR KGK+L+PIC+L KNGVY++LV+DVR+AFE
Sbjct: 294 MLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFE 353
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++CKGMHASDYKK+GAKLKELVPCVLLSFDDEQIL WRG WKSMY PSF
Sbjct: 354 GSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLI 413
Query: 121 PVDLDIAGDADGSGTPSDDPSQ---GTIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
PV D+A +GSG P + + + +SPKM+SLWK AIES+KAL+LDE LGPD L
Sbjct: 414 PVVADVASGLEGSGIPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDETGLGPDAL 473
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AEYE G SE+Y EDE Y + +DDD
Sbjct: 474 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYE-GYNSEDYSEDEMY---NDDDDD 529
Query: 238 EFYDSDS----SDVVPLGSLPVDHIAERL 262
E+ ++S VPLGSLPVD +A++L
Sbjct: 530 EYLVNESLEEMESPVPLGSLPVDLLAKQL 558
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/248 (62%), Positives = 191/248 (77%), Gaps = 9/248 (3%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQ+AP GLTK EADELR KGKSLLPICKLAKNGVY +LV+DVR+AFE
Sbjct: 295 MLWKPAAPVYPKLIQDAPGGLTKDEADELRMKGKSLLPICKLAKNGVYTSLVKDVRDAFE 354
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK+NCKG+ SDYKK+GAKLK+LVPCVLLSFDDEQILMWRGKDWKS YP+P
Sbjct: 355 GSILVKINCKGLDPSDYKKIGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYPQPLPVFT 414
Query: 121 PVDLDIAGDADGSGTPSDDPSQ---GTIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
P +I G+ + SG D+ + + +SPKM+SLWKRAI+S+KAL+LDE NLGPD L
Sbjct: 415 PSKANIVGNLENSGETDDNQYKHDGNMVNTSPKMLSLWKRAIQSSKALLLDEFNLGPDAL 474
Query: 178 LKKVEEFEGISQAAEHSYPALVL-SREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDD 236
L+KVEEF+ +SQA EHS+PA L S+E+ A S A +E+ +Y D + E+D+
Sbjct: 475 LEKVEEFDTVSQALEHSHPAFSLSSKENDAEGSSANFEN-----SYSSDGLHTEEDYAKF 529
Query: 237 DEFYDSDS 244
++ Y SD+
Sbjct: 530 EDSYSSDA 537
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/270 (60%), Positives = 200/270 (74%), Gaps = 17/270 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQEAPEGLTK EA+ LR KGK+LLPICKLAKNGVY++LV DVR+AFE
Sbjct: 339 MLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKNGVYISLVNDVRHAFE 398
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C GMH SDYKKLGAKLKELVPCVLLSFD+EQILMWRGKDWKS+ + S
Sbjct: 399 GSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSIISDDRSAPL 458
Query: 121 PVDLDIAGDADGSGTPSDD--------PSQGTIRSSPKMISLWKRAIESTKALVLDEINL 172
P A D G+P + + TI++SPKM LW+ AI+S KAL+LDEI L
Sbjct: 459 PSR---ASSNDSLGSPGESLENSDLLHGNHHTIKTSPKMKLLWEHAIDSNKALLLDEIGL 515
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDD 232
PDDLL+KVEEFE ISQA EHSYPA + S ED +S +D +S+++ E + +DD
Sbjct: 516 APDDLLEKVEEFERISQATEHSYPAFITSSEDVSSP-----DDSPKSQDHTEANYNSDDD 570
Query: 233 FNDDDEFYDSDSSDVVPLGSLPVDHIAERL 262
+++ +D ++ +VPLGSLPVD IA++L
Sbjct: 571 VGREEDLFD-NADPLVPLGSLPVDIIAKKL 599
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/267 (61%), Positives = 202/267 (75%), Gaps = 11/267 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQEAPEGLTK EA+ELR KGK+LLPICKLAKNGVY++LV DVR+AFE
Sbjct: 340 MLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVDDVRHAFE 399
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPE---PPS 117
GS LVK++C GMH SDYKKLGAKLKELVPCVLLSFD+EQILMWRGKDWKS+ + P
Sbjct: 400 GSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPL 459
Query: 118 FSNPVDLDIAGDADGSGTPSD--DPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPD 175
S D G + S SD + + TI++SPKM LW+RAI+S KAL+LDEI L PD
Sbjct: 460 PSRASSNDSLGSSGESVENSDLLNGNHHTIKTSPKMKLLWERAIDSNKALMLDEIGLAPD 519
Query: 176 DLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFND 235
+LL++VEEFE ISQA EHSYPA + S E+ +S + D +S+++ E + +DD
Sbjct: 520 ELLERVEEFERISQATEHSYPAFITSSEEVSSPA-----DSPESQDHSEANYNSDDDVGR 574
Query: 236 DDEFYDSDSSDVVPLGSLPVDHIAERL 262
+++ +D + +VPLGSLPVD IA++L
Sbjct: 575 EEDLFD-NVDPLVPLGSLPVDIIAKKL 600
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/270 (60%), Positives = 200/270 (74%), Gaps = 17/270 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQEAPEGLTK EA+ LR KGK+LLPICKLAKNGVY++LV DVR+AFE
Sbjct: 340 MLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKNGVYISLVNDVRHAFE 399
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C GMH SDYKKLGAKLKELVPCVLLSFD+EQILMWRGKDWKS+ + S
Sbjct: 400 GSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSIISDDCSAPL 459
Query: 121 PVDLDIAGDADGSGTPSDD--------PSQGTIRSSPKMISLWKRAIESTKALVLDEINL 172
P A D G+P + + TI++SPKM LW+ AI+S KAL+LDEI L
Sbjct: 460 P---SRASSNDSLGSPGESLENSDLLHDNHHTIKTSPKMKLLWEHAIDSNKALLLDEIGL 516
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDD 232
PDDLL+KVEEFE ISQA EHSYPA + S ED +S +D +S+++ E + +DD
Sbjct: 517 APDDLLEKVEEFERISQATEHSYPAFITSSEDVSSP-----DDSPKSQDHTEANYNSDDD 571
Query: 233 FNDDDEFYDSDSSDVVPLGSLPVDHIAERL 262
+++ +D ++ +VPLGSLPVD IA++L
Sbjct: 572 VGREEDLFD-NADPLVPLGSLPVDIIAKKL 600
>gi|147771140|emb|CAN74182.1| hypothetical protein VITISV_034260 [Vitis vinifera]
Length = 306
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/269 (62%), Positives = 198/269 (73%), Gaps = 24/269 (8%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQEAPEGLTK EADELR KGK+L+PIC+L KNGVY++LV+DVR+AFE
Sbjct: 52 MLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFE 111
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++CKGMHASDYKK+GAKLK IL WRG WKSMY PSF
Sbjct: 112 GSPLVKIDCKGMHASDYKKIGAKLK--------------ILTWRGHGWKSMYQGAPSFLI 157
Query: 121 PVDLDIAGDADGSGTPSDDPSQ---GTIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
PV D+A +GSG P + + +SPKM+SLWK AIES+KAL+LDEI LGPD L
Sbjct: 158 PVVADVASGLEGSGIPKSXHHRLDTKAVSASPKMMSLWKSAIESSKALLLDEIGLGPDAL 217
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AE E G SE+Y EDE Y +D +DDD
Sbjct: 218 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEXE-GYNSEDYSEDEMY--NDDDDDD 274
Query: 238 EFYDSDSSDV----VPLGSLPVDHIAERL 262
E+ ++S + VPLGSLPVD +A++L
Sbjct: 275 EYLVNESLEEMESPVPLGSLPVDLLAKQL 303
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 202/269 (75%), Gaps = 11/269 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQE PEGLTK EA E R KGKSL PICKL+KNGVY++LV+DVR+AFE
Sbjct: 301 MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 360
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
SSLVKV+C G+ SDYKK+GAKLKELVPCVLLSFDDEQILMWRG++WKS + + P +
Sbjct: 361 LSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPS 420
Query: 121 PVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
+ + + D S PS++ + T SSPKMISLW+RA+ES+KA++L+E++LGPDDL
Sbjct: 421 LSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVILEELDLGPDDL 480
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LKKVEE EG S AAEH+Y A+VLS DGA+ + +D S+ E+Y + D + DD
Sbjct: 481 LKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSE-------EYYSDIDDDFDD 533
Query: 238 EFYDSDSSDVV-PLGSLPVDHIAERLQRK 265
E D +S D V P+GSLPVD I +L+ +
Sbjct: 534 ECSDDESLDPVGPVGSLPVDKIVRKLRER 562
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/271 (62%), Positives = 204/271 (75%), Gaps = 16/271 (5%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQE PEGLTK EA E R KGKSL PICKL+KNGVY++LV+DVR+AFE
Sbjct: 303 MLWKPAAPVYPKLIQEVPEGLTKEEALEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 362
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
S LVKV+C G+ SDYKK+GAKLKELVPCVLLSFDDEQILMWRG+DWKS + + P +
Sbjct: 363 LSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSRFVDNPLIPS 422
Query: 121 PVDLDIAGDADGSGTPSD-----DPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPD 175
+ +IA + D S PSD DPS TI SSPKMISLWKRA+ES+KA++L+E++LGPD
Sbjct: 423 LSETNIANELDPSDKPSDEQTVSDPSS-TI-SSPKMISLWKRALESSKAVILEELDLGPD 480
Query: 176 DLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFND 235
DLLKKVEE EG S AAEHSY A+VLS DGA+ +Y D + D E Y + D +
Sbjct: 481 DLLKKVEELEGTSLAAEHSYTAMVLSNTDGAAE---DYVD-----DKDRSEEYSDIDDDF 532
Query: 236 DDEFYDSDSSDVV-PLGSLPVDHIAERLQRK 265
DDE D +S D V P+G+LPVD I +L+ +
Sbjct: 533 DDECSDDESLDPVGPVGTLPVDKIVRKLRER 563
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/244 (62%), Positives = 182/244 (74%), Gaps = 14/244 (5%)
Query: 29 LRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELV 88
L +G++L+PIC+L KNGVY++LV+DVR+AFEGS LVK++CKGMHASDYKK+GAKLKE V
Sbjct: 153 LANEGENLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKESV 212
Query: 89 PCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQ---GTI 145
PCVLLSFDDEQIL WRG WKSMY PSF PV D+A +GSG P + + +
Sbjct: 213 PCVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGVPKSNHHRLDTKAV 272
Query: 146 RSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDG 205
+SPKM+SLWK AIES+KAL+LDEI LGPD LLK VEEFEGISQA EHSYPALV+S EDG
Sbjct: 273 SASPKMMSLWKSAIESSKALLLDEIGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDG 332
Query: 206 ASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFYDSDSS-----DVVPLGSLPVDHIAE 260
+ AE+E G SE+Y EDE Y NDDD+ Y + S VPLGSLPVD +A+
Sbjct: 333 TGGTKAEHE-GYNSEDYSEDEMY-----NDDDDEYLVNESLEEMESPVPLGSLPVDLLAK 386
Query: 261 RLQR 264
+L R
Sbjct: 387 QLDR 390
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/279 (54%), Positives = 193/279 (69%), Gaps = 17/279 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLI+EAP+G TK EADE+RRKG+ LLPICKLAKNG+Y+TLV+DVR+AFE
Sbjct: 332 MLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFE 391
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM RGK+WKS Y +P +
Sbjct: 392 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIP 451
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEI---NL 172
V +L + + S SD +Q IR PKM LWK A++S+ AL+LD+ NL
Sbjct: 452 KVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANNL 511
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY---EDGSQSENYDEDEFY 228
PD LL VEEF SQA EHS+PAL+++ D ++ S+ AEY E + +E +
Sbjct: 512 TPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEYMNDEPETSVAGNEEGQLE 571
Query: 229 PEDDFNDDDEFYDSDSSD----VVPLGSLPVDHIAERLQ 263
D DD+ F D D + VPLGSLP+D + ERL
Sbjct: 572 QSPDLRDDEHF-DVDMFERLESSVPLGSLPIDSMIERLN 609
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 194/279 (69%), Gaps = 16/279 (5%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLI+E PEGLTK EADE+RRKG+ LLPICKLAKNG+Y+TLV+DVR+AFE
Sbjct: 334 MLWKPATPVYPKLIKEVPEGLTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFE 393
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
G+ LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM+RGK+WKS Y +P +
Sbjct: 394 GNDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMYRGKEWKSRYSKPLTLIP 453
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEI---NL 172
V +L ++ D + S SD +Q IR PKM LWK A++S+ AL+LD+ +L
Sbjct: 454 KVPKNNLAMSSDMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANDL 513
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEYEDGSQSEN----YDEDEF 227
PD LL VEEF SQA EHS+PAL+++ + + S+ AEY + +SE +E +
Sbjct: 514 TPDSLLTLVEEFSVTSQAVEHSFPALLVTNGEVNTESLSAEYINDDESETSIAGNEEGQL 573
Query: 228 YPEDDFNDDDEF---YDSDSSDVVPLGSLPVDHIAERLQ 263
D + D+ F VPLGSLP+D + E+L
Sbjct: 574 EQSPDLSGDEHFELDMLERLESSVPLGSLPIDGMIEQLN 612
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/279 (53%), Positives = 192/279 (68%), Gaps = 17/279 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
ML KPA PVYPKLI+EAP+G TK EADE+RRKG+ LLPICKLAKNG+Y+TLV+DVR+AFE
Sbjct: 332 MLRKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFE 391
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM RGK+WKS Y +P +
Sbjct: 392 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIP 451
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEI---NL 172
V +L + + S SD +Q IR PKM LWK A++S+ AL+LD+ NL
Sbjct: 452 KVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANNL 511
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY---EDGSQSENYDEDEFY 228
PD LL VEEF SQA EHS+PAL+++ D ++ S+ AEY E + +E +
Sbjct: 512 TPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEYMNDEPETSVAGNEEGQLE 571
Query: 229 PEDDFNDDDEFYDSDSSD----VVPLGSLPVDHIAERLQ 263
D DD+ F D D + VPLGSLP+D + ERL
Sbjct: 572 QSPDLRDDEHF-DVDMFERLESSVPLGSLPIDSMIERLN 609
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 194/280 (69%), Gaps = 19/280 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQEAPEGLTK EADE+RR+GK LLPICKLAKNG+Y+ LVRDVR+AFE
Sbjct: 308 MLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFE 367
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM+RGK+WKS YP+P +
Sbjct: 368 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIP 427
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---L 172
+ ++ ++ D S +DD + +R PKM LW AIES+ AL+LD+ L
Sbjct: 428 KIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIESSVALMLDDAEVDAL 487
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY-----EDGS---QSENYD 223
PD LL +VE+F SQ EHS+PA++++ ++ + AEY E G+ Q +
Sbjct: 488 TPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTEDEPETGTLEPQQHEFT 547
Query: 224 EDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 263
E EDD +DD +SS VPLG+LP+D + ++L
Sbjct: 548 ESSDVAEDDHFEDDMLKRLESS--VPLGALPIDAVVKQLN 585
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 195/280 (69%), Gaps = 19/280 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQEAPEGLTK EADE+RR+GK LLPICKLAKNG+Y+ LVRDVR+AFE
Sbjct: 330 MLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFE 389
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM+RGK+WKS YP+P +
Sbjct: 390 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIP 449
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---L 172
+ ++ ++ D S +DD + +R PKM LW AIES+ AL+LD+ L
Sbjct: 450 KIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIESSVALMLDDAEVDAL 509
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY-----EDGS---QSENYD 223
PD LL +VE+F SQA EHS+PA++++ ++ + AEY E G+ Q +
Sbjct: 510 TPDSLLTRVEDFSVTSQAVEHSFPAVLVANDESNPDVLNAEYTEDEPETGTLEPQQHEFT 569
Query: 224 EDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 263
E ED+ +DD +SS VPLG+LP+D + ++L
Sbjct: 570 ESSDVAEDNHFEDDMLKRLESS--VPLGALPIDAVVKQLN 607
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 194/280 (69%), Gaps = 19/280 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQEAPEGLTK EADE+RR+GK LLPICKLAKNG+Y+ LVRDVR+AFE
Sbjct: 328 MLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFE 387
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM+RGK+WKS YP+P +
Sbjct: 388 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIP 447
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---L 172
+ ++ ++ D S +DD + +R PKM LW AIES+ AL+LD+ L
Sbjct: 448 KIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIESSVALMLDDAEVDAL 507
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY-----EDGS---QSENYD 223
PD LL +VE+F SQ EHS+PA++++ ++ + AEY E G+ Q +
Sbjct: 508 TPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTEDEPETGTLEPQQHEFT 567
Query: 224 EDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 263
E EDD +DD +SS VPLG+LP+D + ++L
Sbjct: 568 ESSDVAEDDHFEDDMLKRLESS--VPLGALPIDAVVKQLN 605
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 187/276 (67%), Gaps = 13/276 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQ+APEGLT EA E+RR+G+ LLPI KLAKNG+Y+ LV+DV++AFE
Sbjct: 330 MLWKPATPVYPKLIQQAPEGLTVEEAAEMRRRGQILLPILKLAKNGIYINLVKDVQDAFE 389
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
G+ LVK++CKG+ SDYKK+GAKL++LVPCVLLSFD EQIL++RGK WKS Y +P +
Sbjct: 390 GNDLVKIDCKGLEPSDYKKIGAKLRDLVPCVLLSFDKEQILIYRGKGWKSRYLKPLTPFP 449
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVL--DEIN-L 172
V +L ++ D +G + + TIR P+M LWKRAIES+ AL L DE N L
Sbjct: 450 KVEKNNLAVSSVVDSTGESAGASNNVTIREVLRPRMFKLWKRAIESSIALSLDDDETNAL 509
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSE--NYDEDEFYPE 230
PD LL +VEEF SQA EHS+PAL++ G ++ E E+GS E++F
Sbjct: 510 TPDTLLVRVEEFSVTSQAVEHSFPALLVGNVKGGPEAVNESENGSDDGIIRPQENQFEKS 569
Query: 231 DDFNDDD--EFYDSDS-SDVVPLGSLPVDHIAERLQ 263
D DDD E+Y + PLGSLP+D + E+L
Sbjct: 570 LDAGDDDHFEYYMLERLESSAPLGSLPIDSVMEQLN 605
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/274 (51%), Positives = 184/274 (67%), Gaps = 12/274 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQ APEGLT EA E+R +G++LLPI KLAKNG+YL LV+DVR+AFE
Sbjct: 331 MLWKPATPVYPKLIQLAPEGLTIEEAAEMRIRGQNLLPIFKLAKNGIYLNLVKDVRDAFE 390
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
G+ LVK+NC+G+ SDYKK+GAKL++LVPC+LLSFD+EQIL++RGK+WKS Y +P +
Sbjct: 391 GNDLVKINCEGLEPSDYKKIGAKLRDLVPCILLSFDNEQILIYRGKEWKSRYSKPLTLIP 450
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---L 172
V DL ++ A S +D IR P+M LWKRAIES+ AL LD+ L
Sbjct: 451 KVQKSDLSVSSFASSSDESTDASDNVAIREVLRPRMFKLWKRAIESSIALSLDDNEADAL 510
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSRE-DGASSSMAEYEDGSQSENYDEDEFYPED 231
PD LL +VEEF SQA EHS+PAL++ + ++ E E ++ N ++F
Sbjct: 511 TPDALLARVEEFSITSQAVEHSFPALLVGNSPEVVNAGYMEDESEDETGNPQVNQFEQSP 570
Query: 232 DFNDDDEF-YD--SDSSDVVPLGSLPVDHIAERL 262
D ++DD F YD PLGSLP+D + ++L
Sbjct: 571 DVSEDDPFEYDMLERLESSAPLGSLPIDSVVDQL 604
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 96/115 (83%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+L+Q APEGLT EA +R+KG+ L+PICKLAKNGVY LV +VR AFE
Sbjct: 342 MLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFE 401
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP 115
LV++NC+G++ASDY+K+GAKLK+LVPCVL+SF+ E ILMWRG DWK ++P+P
Sbjct: 402 ECELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKP 456
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 96/115 (83%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+L+Q APEGLT EA +R+KG+ L+PICKLAKNGVY LV +VR AFE
Sbjct: 342 MLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFE 401
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP 115
LV++NC+G++ASDY+K+GAKLK+LVPCVL+SF+ E ILMWRG DWK ++P+P
Sbjct: 402 ECELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKP 456
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 104/141 (73%), Gaps = 7/141 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LIQ APEGLT EA +R KG+ L+PICKL KNGVY LVR+VR AFE
Sbjct: 346 MLWKPVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFE 405
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
LV++NC+GM+ SD++K+GAKL++LVPCVL+SF+ E ILMWRG+DWKS SF+
Sbjct: 406 ECELVRINCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKS------SFTK 459
Query: 121 PV-DLDIAGDADGSGTPSDDP 140
PV D D A ++ G S P
Sbjct: 460 PVNDGDEAKNSSIDGATSATP 480
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 96/115 (83%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ APEGLT EA E+RRKG+ L+PICKLAKNGVY LV++VR AFE
Sbjct: 350 MLWKPVTPVYPRLIKRAPEGLTLEEASEMRRKGRKLIPICKLAKNGVYCNLVKEVREAFE 409
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP 115
LV+++C+G++ SDY+K+GAKLKELVPC+L+SF+ E ILMWRG+DWKS +P
Sbjct: 410 ECELVRIDCQGVNGSDYRKVGAKLKELVPCLLISFEHEHILMWRGRDWKSSMIKP 464
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 96/115 (83%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+LIQ+ PEGLT+ EA +RRKG+ L+PICKL KNGVY LV++V+ AFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP 115
LV+++C+GM SD++K+GAKLK+LVPCVL+SF++EQIL+WRG++WKS P
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTP 455
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 95/114 (83%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LIQ+ PEGLT EA E+R+KG++L PICKL KNGVY LV +VR AFE
Sbjct: 270 MLWKPVPPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFE 329
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPE 114
LV+VNC+G++ SDY+K+GAKL++LVPC LLS+++E ILMWRG++WKS +P+
Sbjct: 330 ECELVRVNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPD 383
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 95/110 (86%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+LIQ+ PEGLT EA E+RRKG+ L+PICKL KNGVY LV++V+ AFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
LV+++C+GM SD++K+GAKLK+LVPCVL+SF++EQIL+WRG++WKS
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLISFENEQILIWRGREWKS 450
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 129/204 (63%), Gaps = 15/204 (7%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKLI++AP GLT EA+ LR+ G+ L P+C L KNGVY+ LVRDVRNAF+
Sbjct: 189 MLWKPPAPIYPKLIEKAPAGLTIEEANNLRKLGRELPPVCHLGKNGVYVNLVRDVRNAFK 248
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
LVKV+CK M+ SDYKK+GAKLK+LVPCVLLSF+ E ILMWRG + + SN
Sbjct: 249 VDDLVKVDCKNMNPSDYKKIGAKLKDLVPCVLLSFERESILMWRGPESLT------ESSN 302
Query: 121 PVDLDIAGDADGSGTPSDDPSQGTIR---------SSPKMISLWKRAIESTKALVLDEIN 171
V D +G+A G +R + + SL++ A++S +ALVL+E
Sbjct: 303 SVQGDSSGEAQPDFNQELPEDGGNVRVEMDPEVEKAVREFESLYQGALDSEQALVLEESE 362
Query: 172 LGPDDLLKKVEEFEGISQAAEHSY 195
L PD LL+ V+ G + A Y
Sbjct: 363 LDPDTLLQVVKSRFGGAFGAPAKY 386
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 93/113 (82%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYP+L++ P+GLT E E+R+KG+ L+PICKL KNGVY LV+ VR AFE
Sbjct: 350 MLWKPAAPVYPRLVKHIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFE 409
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV++NC+G++ SD++K+GAKLK+LVPCVL+SF+ E IL+WRG+DWKS P
Sbjct: 410 ECELVRINCQGLNGSDFRKIGAKLKDLVPCVLISFESEHILLWRGRDWKSSLP 462
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 91/114 (79%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+L+Q PEGLT EA ++R+KG +L+PICKL KNGVY LV+ VR AFE
Sbjct: 299 MLWKPVPPVYPRLVQRVPEGLTLEEATKMRQKGSTLIPICKLGKNGVYCDLVKTVREAFE 358
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPE 114
LV++NC+G++ SDY+K+GAKL++LVPC LLSF+ E ILMWRG +WKS P+
Sbjct: 359 ECELVRINCQGLNKSDYRKIGAKLRDLVPCTLLSFEYEHILMWRGPNWKSSIPD 412
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 90/113 (79%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYP+L++ P+GLT EA E+R+KG+ L P+CKL KNGVY LV +VR AFE
Sbjct: 281 MLWKPAAPVYPRLVKTVPDGLTSDEATEMRKKGRQLTPVCKLGKNGVYANLVNEVREAFE 340
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DW+S P
Sbjct: 341 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGNDWRSSLP 393
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 151/277 (54%), Gaps = 14/277 (5%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYP+L+++ P+GLT EA+++R++G+ L PICKL KNGVYL LV+ VR AFE
Sbjct: 283 MLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFE 342
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP--EPPSF 118
LV+V+C G++ SD +K+GAKLK+LVPC LLSF+ E ILMWRG DWKS P E F
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPLEENDF 402
Query: 119 SNPVDLDIAGDADGSG---TPSDDPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPD 175
D + GSG TP + + T +I ++ +S K+ + + LG
Sbjct: 403 KVASDQILNSKEAGSGSALTPIELVNNATSLKKCNLIEGAEKLEDSMKSSFENGMILGSA 462
Query: 176 DLLKKVEEFEGISQAAEHSYPALVLSREDGA-----SSSMAEYEDGS---QSENYDEDEF 227
V EGI + + S + A S + Y S +SEN + E
Sbjct: 463 CANPGVCNSEGIDGTESSADAPIEFSPSNSARDLDPSQTSTLYCQSSLLDKSENGELIEM 522
Query: 228 YPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQR 264
YP D + ++ D + +GS H E ++R
Sbjct: 523 YP-DRCGNSEQSPDVPEALTCLMGSSDEIHELETMRR 558
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 78
E LTK E DEL + + ++G+ ++ ++ + ++ + K+ CKG+ D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 79 KLGAKLKELVPCVLLSFDDEQILMWRGKDW----KSMYP 113
+ +L+E V ++ I ++RG+++ + +YP
Sbjct: 243 NVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYP 281
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 92/113 (81%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYP+L+++ P+GLT EA+++R++G+ L PICKL KNGVYL LV+ VR AFE
Sbjct: 283 MLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFE 342
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC LLSF+ E ILMWRG DWKS P
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLP 395
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 78
E LTK E DEL + + ++G+ ++ ++ + ++ + K+ CKG+ D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 79 KLGAKLKELVPCVLLSFDDEQILMWRGKDW----KSMYP 113
+ +L+E V ++ I ++RG+++ + +YP
Sbjct: 243 NVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYP 281
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 92/115 (80%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
M WKP +PVYP+LI+ PEGLT +A E+R+KG+ L+PICKL KNGVY LV ++R AFE
Sbjct: 337 MRWKPVSPVYPRLIKRVPEGLTLEKATEMRQKGRDLMPICKLGKNGVYWDLVTNIREAFE 396
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP 115
LV++NC+ ++ SDY+++GAKLK+LVPC LLSF+++ ILMWRG++W+ P+P
Sbjct: 397 ECELVRINCQELNTSDYRRIGAKLKDLVPCALLSFENDHILMWRGQNWRPSLPDP 451
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+L+ + P GLT EA E+R +G+ L PICKL KNGVY LV+ VR AFE
Sbjct: 283 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRARGRQLPPICKLGKNGVYANLVKQVREAFE 342
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS P
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 395
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+L+ + P GLT EA E+R +G L PICKL KNGVY LV VR AFE
Sbjct: 1 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 60
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS P
Sbjct: 61 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 113
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 86/105 (81%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLW+P APVYPKLIQ APEGLT EAD LRR+G+ + IC L KNGVYL LVRDVRNAF+
Sbjct: 189 MLWRPPAPVYPKLIQRAPEGLTVEEADSLRRRGRKIPAICHLGKNGVYLNLVRDVRNAFQ 248
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRG 105
+LVKV+C+ M+ D +K+GAKLK+LVPCVLLSFD E ILMW+G
Sbjct: 249 ADNLVKVDCEKMNTHDLRKIGAKLKDLVPCVLLSFDHECILMWKG 293
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+L+ + P GLT EA E+R +G L PICKL KNGVY LV VR AFE
Sbjct: 283 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 342
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS P
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 395
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+L+ + P GLT EA E+R +G L PICKL KNGVY LV VR AFE
Sbjct: 169 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 228
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS P
Sbjct: 229 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 281
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
M+WKP P+YP+LIQ+AP GL+ AD LRR+G+ + P+ KL++NGVYL LV +V++AFE
Sbjct: 192 MMWKPPVPIYPRLIQQAPAGLSVEHADYLRRRGRRVKPLTKLSRNGVYLHLVNEVKSAFE 251
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPS-FS 119
LVK++C+GM+ +D +K+GAKLKEL+ VLLSF+D +LMWRG + + F
Sbjct: 252 VDELVKLDCRGMNIADVRKIGAKLKELLGIVLLSFEDNCVLMWRGPAKLTEGEQATQDFI 311
Query: 120 NPVDLDIAGDADGSGTPSD-DPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPD 175
+ ++D S P+ DP+ ++++ ++ +LW+RAI L++ L PD
Sbjct: 312 RQSVFEGKENSDASEEPNQVDPA--LLQAAKELENLWERAINFGMVTTLEDNQLDPD 366
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYP+LI+ EGLT E ++R+KG + + KLAKNG Y +LV VR+AF
Sbjct: 265 MLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHVPVLTKLAKNGYYASLVPMVRDAFL 324
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP-PSFS 119
LV+++CKG+ SDYKK+G KL++LVPC+L+SFD EQI++WRG + S+ SF
Sbjct: 325 TDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFDKEQIIVWRGNEDGSLQDRTQKSFL 384
Query: 120 NPVDLDIAGDADGSGTPSDDPS 141
+ +D D+A D +G PS
Sbjct: 385 SFIDSDVASVKDETGDQEQIPS 406
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYP+LI+ EGLT E ++R+KG + KLAKNG Y ++V VR+AF
Sbjct: 264 MLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHAPVLTKLAKNGYYASIVPMVRDAFL 323
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP-PSFS 119
LV+++CKG+ SDYKK+G KL++LVPC+L+SFD EQI++WRGK+ S+ + SF
Sbjct: 324 MDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFDKEQIIVWRGKEVGSLQDQTQKSFL 383
Query: 120 NPVDLDIAGDADGSGTPSDDPS 141
+ +D D A D +G PS
Sbjct: 384 SFIDSDGASVKDETGDQEQIPS 405
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 82/108 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA P+YP+LI+ EGLT E +R+KG + + KLAKNG Y +LV VR+AF
Sbjct: 258 MLWKPAEPIYPRLIKTTIEGLTVVETKAMRKKGLHVPVLTKLAKNGYYASLVPMVRDAFL 317
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LV+++CKG+ SDY+K+G KL++LVPC+L+SFD EQI++WRGKD+
Sbjct: 318 TDELVRIDCKGLPKSDYRKIGVKLRDLVPCILVSFDKEQIIIWRGKDY 365
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 80/107 (74%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA P+YP+LI+ EGLT E E+R+KG + KLAKNG Y +LV VR+ F
Sbjct: 263 MLWKPAEPIYPRLIKTTIEGLTVEETKEMRKKGLHASVLTKLAKNGYYASLVPMVRDGFL 322
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKD 107
LV+++CKG+ SDY+K+G KL++LVPC+L+SFD EQI++WRGKD
Sbjct: 323 TDELVRIDCKGLPKSDYRKIGVKLRDLVPCILVSFDKEQIIVWRGKD 369
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 85/109 (77%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
M+W+P P+YPKLI+ EGL+ E E+R+KG +L + KLAKNG Y +LV VR+AF
Sbjct: 257 MMWRPHEPIYPKLIKTTIEGLSIEETKEMRKKGLALPALTKLAKNGYYASLVPMVRDAFL 316
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
+ LV+++C+G+ SDYKK+G KL++LVPC+L++F+ EQI++WRGKD+K
Sbjct: 317 VNELVRIDCQGLPKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK 365
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 82/108 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYP+LI+ EGLT E E+R+KG + + KLAKNG Y +LV VR+AF
Sbjct: 257 MLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFL 316
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LV+++ KG+ SDY+K+G KL++LVPC+++SFD EQI++WRGKD+
Sbjct: 317 TDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 364
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 82/108 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYP+LI+ EGLT E E+R+KG + + KLAKNG Y +LV VR+AF
Sbjct: 233 MLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFL 292
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LV+++ KG+ SDY+K+G KL++LVPC+++SFD EQI++WRGKD+
Sbjct: 293 TDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 340
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 82/108 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYP+LI+ EGLT E E+R+KG + + KLAKNG Y +LV VR+AF
Sbjct: 444 MLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFL 503
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LV+++ KG+ SDY+K+G KL++LVPC+++SFD EQI++WRGKD+
Sbjct: 504 TDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 551
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 85/111 (76%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLW+P P+YP+LI+ +GL+ E E+R+KG ++ + KLAKNG Y +LV VR+AF
Sbjct: 253 MLWRPHEPIYPRLIKTTIDGLSIDETKEMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFL 312
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSM 111
LV+++CKG+ SDYKK+G KL++LVPC+L++FD EQI++WRGKD++ +
Sbjct: 313 SCELVRIDCKGLERSDYKKIGCKLRDLVPCILVTFDKEQIVVWRGKDYQPL 363
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 83/109 (76%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ +GL+ E +R+KG ++ + KLAKNG Y +LV VR+AF
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFL 318
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
S LV+++C G+ DYKK+GAKL++LVPC+L++FD EQ+++WRGKD+K
Sbjct: 319 VSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYK 367
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 83/109 (76%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ +GL+ E E+R++G S+ + KLAKNG Y LV VR+AF
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIKETKEMRKRGLSVPALTKLAKNGYYAFLVPMVRDAFL 318
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
LV+++C+G+ DYKK+G KL+++VPC+L++F++EQI++WRGKD+K
Sbjct: 319 SCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFENEQIVVWRGKDYK 367
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 85/109 (77%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
M+W+P P+YP+LI+ +GL+ E E+R++G ++ + KLAKNG Y +LV VR+AF
Sbjct: 262 MMWRPHEPIYPRLIKTTIDGLSIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFL 321
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
+ LV+++C+G+ SDYKK+G KL++LVPC+L++F+ EQI++WRGKD+K
Sbjct: 322 TNELVRIDCQGLEKSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDYK 370
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 100/152 (65%), Gaps = 13/152 (8%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ +GL+ E +R+KG ++ + KLAKNG Y +LV VR+AF
Sbjct: 260 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFL 319
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPS--- 117
S LV+++C G+ DYKK+GAKL++LVPC+L++FD EQ+++WRGK++K PP
Sbjct: 320 VSELVRIDCLGLDRKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKNYK-----PPKDDD 374
Query: 118 -FSNPVDLDIAGDADG----SGTPSDDPSQGT 144
+S+ + + + D+DG S D P + T
Sbjct: 375 EYSSFIHRESSIDSDGDLSCSRGAQDSPGETT 406
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 79/106 (74%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL++ +GLT E E+R +G + LP+ KL +NGVY+ +V VR+AFE
Sbjct: 239 MLWKPYAPIYPKLVKNVADGLTFEETKEMRNRGLNSLPLMKLTRNGVYVNVVDRVRDAFE 298
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++CK + SD KK+G KLK+LVPCV + F DEQI++WRGK
Sbjct: 299 TEEVVRLDCKHVGMSDCKKIGVKLKDLVPCVPILFKDEQIILWRGK 344
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 82/109 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLW+P P+YP+LI+ +GL+ E E+R++G ++ + KLAKNG Y +LV VR+AF
Sbjct: 264 MLWRPHEPIYPRLIKTVIDGLSIEETKEMRKRGLAVPALTKLAKNGYYGSLVPMVRDAFL 323
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
L++++C+G+ DYKK+G KL++ VPC+L++F+ EQI++WRGKD+K
Sbjct: 324 TDELIRIDCQGLERRDYKKIGCKLRDFVPCILVTFEKEQIVVWRGKDYK 372
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 84/109 (77%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ +GL+ E E+R++G ++ + KL++NG + +LV VR+AF
Sbjct: 257 MLWKPHEPVYPRLIKTTIDGLSIEETKEMRKRGLAVPALTKLSRNGYFGSLVPMVRDAFL 316
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
S LV+++C+G+ SD KK+G KL++LVPC+L++FD EQI++WRGKD+K
Sbjct: 317 VSELVRIDCQGLDRSDSKKIGCKLRDLVPCILVTFDKEQIVVWRGKDYK 365
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 79/110 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL++ +GLT E E+R +G +L P+ KL KNGVY+ +V VR AF
Sbjct: 248 MLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVREAFR 307
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
+V+++C + +SD K++G KL++LVPCV + F DEQI++W+GK+ S
Sbjct: 308 SEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWKGKNGSS 357
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL+Q EG+T E ELR +G + P+ KL +NGVY+ +V VR AF+
Sbjct: 244 MLWKPLAPIYPKLVQSVAEGMTFEETKELRNRGLNSPPLMKLTRNGVYVNVVDRVREAFQ 303
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + SD KK+G KL++LVPCV + F DEQI++WRGK
Sbjct: 304 TVEVVRLDCTHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 349
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 78/107 (72%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL++ +GLT E E+R +G +L P+ KL KNGVY+ +V VR AF
Sbjct: 229 MLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVREAFR 288
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKD 107
+V+++C + +SD K++G KL++LVPCV + F DEQI++W+GK+
Sbjct: 289 SEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWKGKN 335
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL+Q EGLT E ELR +G + P+ KL +NGVY+ +V VR AF+
Sbjct: 241 MLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAFK 300
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +D KK+G KL++LVPC+ + F DEQI++WRGK
Sbjct: 301 TVEVVRLDCTHVGTTDCKKIGVKLRDLVPCIPILFKDEQIILWRGK 346
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL+Q EGLT E ELR +G + P+ KL +NGVY+ +V VR AF+
Sbjct: 241 MLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAFK 300
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +D KK+G KL++LVPC+ + F DEQI++WRGK
Sbjct: 301 TVEVVRLDCTHVGTTDCKKIGVKLRDLVPCIPILFKDEQIILWRGK 346
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP+L+Q +GLT + ELR G + P+ KL +NGVY+ +V VR AF+
Sbjct: 245 MLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFK 304
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +SD KK+G KL++LVPCV L F DEQI++WRGK
Sbjct: 305 TVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 350
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP+L+Q +GLT + ELR G + P+ KL +NGVY+ +V VR AF+
Sbjct: 240 MLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFK 299
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +SD KK+G KL++LVPCV L F DEQI++WRGK
Sbjct: 300 TVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 345
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL+Q EGLT E ELR +G + + KL +NGVY+ +V VR AF+
Sbjct: 245 MLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPALTKLTRNGVYVNVVDKVREAFK 304
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + SD KK+G KL++LVPC+ + F DEQI++WRGK
Sbjct: 305 TVEVVRLDCTHVGTSDCKKIGVKLRDLVPCIPILFKDEQIILWRGK 350
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP+L+Q +GLT + ELR G + P+ KL +NGVY+ +V VR AF+
Sbjct: 244 MLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFK 303
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +SD KK+G KL++LVPCV L F DEQI++WRGK
Sbjct: 304 TVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 349
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP+L++ EGLT E E+R+ G + P+ KL +NGVY+ +V VR AF+
Sbjct: 242 MLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFK 301
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRG 105
+VK++C + SD KK+G KL++LVPCV + F DEQI++WRG
Sbjct: 302 TQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWRG 346
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 78/104 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP ++Q PEGL++ EAD LR G+ + +C+L + GVY+ LV+ V++AFE
Sbjct: 187 MLWKPPAPIYPSVVQSVPEGLSEKEADNLRALGRRIHCLCRLERAGVYINLVKMVKDAFE 246
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWR 104
LVK++C+ + SD KK+GAKL++LVPCV LSF+ +L+W+
Sbjct: 247 IDELVKIDCRELDRSDMKKVGAKLRDLVPCVPLSFERHFMLLWK 290
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP+L++ EGLT E E+R+ G + P+ KL +NGVY+ +V VR AF+
Sbjct: 242 MLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFK 301
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRG 105
+VK++C + SD KK+G KL++LVPCV + F DEQI++WRG
Sbjct: 302 TQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWRG 346
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP P+YP+L++ +GLT E E+R +G + KL +NGVY+ +V VR FE
Sbjct: 239 MLWKPYPPIYPRLVKNVADGLTFEETKEMRNRGIHSPALMKLTRNGVYVNVVGRVREEFE 298
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + SD K++G KLK+LVPCV + F DEQI++WRGK
Sbjct: 299 TEEIVRLDCTHVGMSDCKRIGVKLKDLVPCVPILFKDEQIILWRGK 344
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YPKL++ + L+ E E+R +G + P+ KL +NGVY+ +V VR AF+
Sbjct: 244 MLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNSPPLMKLTRNGVYVNVVDRVREAFK 303
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +SD K++G KL++LVPCV + F +EQI++WRGK
Sbjct: 304 FEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFKNEQIILWRGK 349
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP P+YP+L++ +GL E E+R +G + KL +NGVY+ +V VR FE
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + SD K++G KLKE+VPCV + F DEQI++WRGK
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 79/114 (69%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP++PKL++ +GL+ E E+R +G + + KL +NGVY+ +V VR AF+
Sbjct: 285 MLWKPYAPIFPKLVKNVADGLSFEETKEIRNRGLNSPALMKLTRNGVYVYVVERVREAFQ 344
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPE 114
+V+++C + +SD KK+G KL++LVPCV + F DEQI++WRGK + PE
Sbjct: 345 TEEVVRLDCTHVGSSDCKKIGVKLRDLVPCVPILFKDEQIILWRGKRDQEQNPE 398
>gi|297739072|emb|CBI28561.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 9/89 (10%)
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AE+E G SE+Y EDE Y + DDD
Sbjct: 157 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEHE-GYNSEDYSEDEMYND----DDD 211
Query: 238 EFYDSDSSDV----VPLGSLPVDHIAERL 262
E+ ++S + VPLGSLPVD +A++L
Sbjct: 212 EYLVNESLEEMESPVPLGSLPVDLLAKQL 240
>gi|225425589|ref|XP_002265469.1| PREDICTED: uncharacterized protein LOC100248190 [Vitis vinifera]
Length = 330
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 9/89 (10%)
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AE+E G SE+Y EDE Y + DDD
Sbjct: 244 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEHE-GYNSEDYSEDEMYND----DDD 298
Query: 238 EFYDSDSSDV----VPLGSLPVDHIAERL 262
E+ ++S + VPLGSLPVD +A++L
Sbjct: 299 EYLVNESLEEMESPVPLGSLPVDLLAKQL 327
>gi|147867142|emb|CAN82651.1| hypothetical protein VITISV_024772 [Vitis vinifera]
Length = 131
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AEYE G SE+Y EDE Y + +DDD
Sbjct: 44 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYE-GCNSEDYSEDEMY---NDDDDD 99
Query: 238 EFYDSDSSDV----VPLGSLPVDHIAERL 262
E+ ++S + VPLGSLPVD +A++L
Sbjct: 100 EYLVNESLEEMESPVPLGSLPVDLLAKQL 128
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 15/105 (14%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKL-------------AKNGV 47
MLWKP PVYP+LI+ +GL+ E +R+KG ++ + KL AKNG
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLGPYLFHAFLFLNSAKNGY 318
Query: 48 YLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVL 92
Y +LV VR+AF S LV+++C G+ DYKK+GAKL+ V C
Sbjct: 319 YGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLR--VRCFF 361
>gi|194695928|gb|ACF82048.1| unknown [Zea mays]
Length = 125
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 12/126 (9%)
Query: 151 MISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGAS 207
M LWK A++S+ AL+LD+ NL PD LL VEEF SQA EHS+PAL+++ D ++
Sbjct: 1 MFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDAST 60
Query: 208 SSM-AEY---EDGSQSENYDEDEFYPEDDFNDDDEFYDSDSSD----VVPLGSLPVDHIA 259
S+ AEY E + +E + D DDE +D D + VPLGSLP+D +
Sbjct: 61 DSLSAEYMNDEPETSVAGNEEGQLEQSPDLR-DDEHFDVDMFERLESSVPLGSLPIDSMI 119
Query: 260 ERLQRK 265
ERL +
Sbjct: 120 ERLNSE 125
>gi|147867140|emb|CAN82649.1| hypothetical protein VITISV_024770 [Vitis vinifera]
Length = 157
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LK VEEFEGISQA EHSYPALV+S EDG + AE ++G SE+Y EDE Y + +DDD
Sbjct: 70 LKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAE-DEGYNSEDYSEDEMY---NDDDDD 125
Query: 238 EFYDSDSSDV----VPLGSLPVDHIAERL 262
E+ ++S + VPLGSLPVD +A++L
Sbjct: 126 EYLVNESLEEMESPVPLGSLPVDLLAKQL 154
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLA 43
MLWKP PVYP+L+Q APEGLT EA +R+KG+ L+PICKL
Sbjct: 342 MLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLG 384
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAK 44
MLWKP AP+YPKL+Q EGLT E ELR +G + P+ KL+K
Sbjct: 241 MLWKPLAPIYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLSK 284
>gi|357488365|ref|XP_003614470.1| CRS2-associated factor [Medicago truncatula]
gi|355515805|gb|AES97428.1| CRS2-associated factor [Medicago truncatula]
Length = 248
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 43 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLK 85
KNGVY+ LV+D +AF S VK++CKG+ DYKKLG+K K
Sbjct: 119 VKNGVYIMLVKDAGDAFGRSRFVKIDCKGLDPGDYKKLGSKHK 161
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR G+ L P L ++ L + +E S
Sbjct: 359 YKPPFRVLPYGVRRS---LSRKDTTNLRRLGRGLPPHFALGRSRQLQGLAAAMVKLWERS 415
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ K+ K G+ + +++ LK+L V+LS +++ ++ +RGKD+ S
Sbjct: 416 SIAKIALKRGVQLTTSERMAEDLKKLTGGVMLSRNNDFVVFYRGKDFLS 464
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 358 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 414
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ K+ K G+ + +++ +K+L V+LS ++E I+ +RGKD+ S
Sbjct: 415 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 463
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 363 YKPPFRVLPYGVRPS---LSRMDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 419
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ KV K G+ + +++ +K+L V+LS ++E I+ +RGKD+ S
Sbjct: 420 SIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 468
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYL 49
MLWKP PVYP+LI+ +GL+ E +R+KG L + L K G YL
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKG---LAVPALTKLGPYL 304
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 1039 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 1095
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ K+ K G+ + +++ +K+L V+LS ++E I+ +RGKD+ S
Sbjct: 1096 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNEFIVFYRGKDFLS 1144
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP + P ++ LT E RR +++ P L +N L + + +E S
Sbjct: 514 YKPPFRLLPYGVRHC---LTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERS 570
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
++VK+ K G+ + +++ +LK L +LLS + E I+ +RG D+
Sbjct: 571 AIVKIAIKRGVQNTRNERMAEELKVLTGGILLSRNKEYIVFYRGNDF 617
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 374 YKPPFRVLPYGVRRS---LSRKDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWERS 430
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ KV K G+ + +++ +K+L V+LS +++ ++ +RGKD+ S
Sbjct: 431 SIAKVALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFVVFYRGKDFLS 479
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
+L K + P + PE +T E R+ G + L + GV+ + ++ ++
Sbjct: 581 VLGKVETALKPTEDTKPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 640
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ----ILMWRGKDWKSMYPEPP 116
LVK+ K +D K+ L+ VL+S D I+++RGKD+K P
Sbjct: 641 YRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVVFRGKDYKR-----P 695
Query: 117 SFSNPVDL 124
S P +L
Sbjct: 696 SMLRPRNL 703
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNC-KGMHASDY 77
E L++ EA R G + K G+Y ++ ++ ++ V++ C + +
Sbjct: 123 EPLSEGEAAHYARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEET 182
Query: 78 KKLGAKLKELVPCVLL-SFDDEQILMWRGKDWKS---MYP 113
+++GA+L L ++L +D ++M+RGK++++ +YP
Sbjct: 183 RRIGAELARLSGGIVLDVLEDRTVIMFRGKNYQTPEELYP 222
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 2 LWKPAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57
L P P Y + P G LT E LR+ GK+L L +N + L +
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478
Query: 58 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+E S + K+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 479 IWEKSLIAKIAVKRGIQNTNNKLMADEVKALTGGVLLLRNKYYIVIYRGKDF 530
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 2 LWKPAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57
L P P Y + P G LT E LR+ GK+L L +N + L +
Sbjct: 419 LLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQ 478
Query: 58 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+E S + K+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 479 IWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDF 530
>gi|430750626|ref|YP_007213534.1| RNA-binding protein [Thermobacillus composti KWC4]
gi|430734591|gb|AGA58536.1| putative RNA-binding protein, YhbY family [Thermobacillus composti
KWC4]
Length = 96
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKL 80
LT + LR L PI ++ K G+ L+R V A E L+KV+ D K++
Sbjct: 2 LTGKQKRFLRALAHPLNPIFQVGKGGINEHLIRHVSEALEARELIKVSVLNNQEGDPKEI 61
Query: 81 GAKLKELVPCVLLSFDDEQILMWR-GKDWKSM 111
GA++ E L+ + I+++R KD K +
Sbjct: 62 GAEIAERAGAELVQVIGKTIVLYRESKDHKKI 93
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 8 PVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSS 63
P Y ++ P G LT E LR+ KSL L +N + L + +E S
Sbjct: 395 PGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSI 454
Query: 64 LVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+VK+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 455 VVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDF 500
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 365 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKS 421
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ K+ K G+ + +++ +K+L V+LS +++ ++ +RGKD+ S
Sbjct: 422 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLS 470
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 6 AAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 61
+ P Y ++ P G LT E LR+ KSL L +N + L + +E
Sbjct: 393 SIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEK 452
Query: 62 SSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
S +VK+ K G+ ++ K + ++K L VLL + I+++RGKD+
Sbjct: 453 SIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDF 500
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 27 DELRR---KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 83
DELRR G L K+ K GV +V + + + LVK+ C + A + K+
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 84 LKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLD---------------IAG 128
L+ +++ I+++RG D+K Y + N +D IA
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFQDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 129 DADGSGTPSDDPSQ 142
+ GS SD+P++
Sbjct: 264 EQSGSEEDSDNPAE 277
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 8 PVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKV 67
P + +L L E LRR + P L +N + L + +E S++VK+
Sbjct: 540 PPFRQLPYRTKLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKI 599
Query: 68 NCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
K G+ + ++ ++K+L VL+S + E I+ +RG D+ +
Sbjct: 600 AIKRGVPNTCNDRMAEEIKKLTGGVLISRNKEYIIFYRGNDFMT 643
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 2 LWKPAAPVYPKLIQEAPEGL----TKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57
L P Y + + P GL T E LRR G+ L L +N L +
Sbjct: 382 LLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIK 441
Query: 58 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPP 116
+E + K+ K G+ ++ + + +LK L LLS D E I+ +RGKD+ PP
Sbjct: 442 LWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFL-----PP 496
Query: 117 SFSNPVD 123
+ S+ ++
Sbjct: 497 AVSSAIE 503
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 2 LWKPAAPVYPKLIQEAPEGL----TKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57
L P Y + + P GL T E LRR G+ L L +N L +
Sbjct: 382 LLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIK 441
Query: 58 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPP 116
+E + K+ K G+ ++ + + +LK L LLS D E I+ +RGKD+ PP
Sbjct: 442 LWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGKDFL-----PP 496
Query: 117 SFSNPVD 123
+ S+ ++
Sbjct: 497 AVSSAIE 503
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 79
LT E L+R GK L L +N L + +E +VK+ K G+ + K
Sbjct: 369 LTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKI 428
Query: 80 LGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ +LK L +LLS D E + +RGKD+
Sbjct: 429 MAKELKHLTGGILLSRDREFFVFYRGKDY 457
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 27 DELRR---KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 83
DELRR G L K+ K GV +V + + + LVK+ C + A + K+
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 84 LKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLD---------------IAG 128
L+ +++ I+++RG D+K Y N +D IA
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 129 DADGSGTPSDDPSQ 142
+ GS SD+P++
Sbjct: 264 EQSGSEEDSDNPAE 277
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 79
LT E RR ++ P L +N L R + +E S++ K+ K G+ + +
Sbjct: 404 LTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDR 463
Query: 80 LGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVD 123
+ +L++L LLS + E I+ +RG D+ PP +N ++
Sbjct: 464 MAEELRKLTGGTLLSRNKEYIVFYRGNDFL-----PPVVTNTLN 502
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 7 APVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
P Y K + P G LT E L+R G+ L L +N L + +E
Sbjct: 358 VPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKLWEKC 417
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ K+ K G+ ++ + + +LK L LLS D E I+++RGKD+
Sbjct: 418 EIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDF 464
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
++P V P ++ A GL EA LRR ++L P L +N L + +E S
Sbjct: 402 YQPPFRVLPFGVR-ATLGL--REATALRRIARTLPPHFALGRNRQLQGLAVAMIKLWEIS 458
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ KV K G+ + +++ ++K+L +LLS + + ++ +RGK++ S
Sbjct: 459 SIAKVALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFFRGKNFLS 507
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 27 DELRR---KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAK 83
DELRR G L K+ K GV +V + + + LVK+ C + A + K+
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 84 LKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLD---------------IAG 128
L+ +++ I+++RG D+K Y N +D IA
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDEDADLAIIAS 263
Query: 129 DADGSGTPSDDPSQ 142
+ GS SD+P++
Sbjct: 264 EQSGSEEDSDNPAE 277
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP + P A + L+ E LRR K L P L +N L + ++ S
Sbjct: 378 YKPPLRMLP---YRAKKNLSNMELTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKS 434
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LVK+ K G+ + + + +L+ L VLLS D I ++RGKD+
Sbjct: 435 ELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRDKFFITLYRGKDF 481
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 32 KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCV 91
KGK+ +P+ + G+Y ++ ++ ++ VKV K + K++ A+L L +
Sbjct: 225 KGKNYVPV---GRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGL 281
Query: 92 LLSFDDE-QILMWRGKDWKSMYPEPPS 117
+L +E I+M+RGK+ Y +PP+
Sbjct: 282 VLDIHEEDTIIMYRGKN----YSQPPT 304
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P I+ L E LRR + P L +N + L + +E S
Sbjct: 536 YKPPFRVLPYKIKST---LRDKEMTTLRRLSRQTAPHFALGRNREHQGLAAAMVKLWEKS 592
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
++ K+ K G+ + ++ ++K+L VLLS + E I+ +RG D+
Sbjct: 593 AIAKIAIKRGVPNTCNDRMAEEIKKLTGGVLLSRNKEYIVFYRGNDF 639
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNC-KGMHASDY 77
EG+T+ E LRR G + P L + GV+ V ++ ++ LVK+ C K M D
Sbjct: 541 EGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDV 600
Query: 78 KKLGAKLKELVPCVLLSFDDEQ----ILMWRGKDW 108
+++ L+ +L++ + I+++RGK++
Sbjct: 601 QQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNY 635
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P ++ + L++ + LRR + L P L ++ L + +E S
Sbjct: 211 YKPPFRVLPYGVRPS---LSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKS 267
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
S+ K+ K G+ + +++ +K+L V+LS +++ ++ +RGKD+ S
Sbjct: 268 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLS 316
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 79
L+ E L R + + P +++N L + + +E + + KV K + ++D K
Sbjct: 228 LSDREFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 287
Query: 80 LGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ +LK L CVLL + ++ +RGKD+
Sbjct: 288 MADELKRLTGCVLLGREKTHMIFYRGKDF 316
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP V P I+ L E LRR + P L +N + L + +E S
Sbjct: 540 YKPPFRVLPYKIKST---LRDKEMTTLRRLARQTAPHFALGRNREHQGLAAAMVKLWEKS 596
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
++ K+ K G+ + ++ ++K+L VLLS + E I+ +RG D+
Sbjct: 597 AIAKIAIKRGIPNTCNDRMAEEIKKLTGGVLLSRNKEFIVFYRGNDF 643
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 3 WKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGS 62
+KP + P A + L+ E LRR K L P L +N L + ++ S
Sbjct: 263 YKPPLRMLP---YRAKKNLSNMELTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKS 319
Query: 63 SLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LVK+ K G+ + + + +L+ L VLLS D I ++RGKD+
Sbjct: 320 ELVKIGLKRGVQNTRNQLMAEELERLTGGVLLSRDKFFITLYRGKDF 366
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 79
LT E L+R G+ L L +N + L + +E + K+ K G+ ++ +
Sbjct: 381 LTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEL 440
Query: 80 LGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ +LK L LLS D E I+++RGKD+
Sbjct: 441 MAQELKWLTGGTLLSRDREFIVLYRGKDF 469
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 79
L+ E L R + + P +++N L + + +E + + KV K + ++D K
Sbjct: 227 LSDKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 286
Query: 80 LGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ +LK L CVLL + ++ +RGKD+
Sbjct: 287 MADELKRLTGCVLLGREKTHMIFYRGKDF 315
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKN----GVYLTLVRDVRNAFEGSSLVKVNCK-GMHAS 75
L E ELR + + P L KN GV +V+ +E S +VK+ K G+ +
Sbjct: 227 LNNFELTELRHLARPIPPHIVLGKNRGLDGVAAAIVK----LWERSEIVKIGVKRGVQNT 282
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+++ +LK L LLS D E I+ RGKD+
Sbjct: 283 SNERMAEELKRLTGGTLLSRDKEFIVFHRGKDF 315
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 2 LWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 61
L K + P + PE +T E R+ G + L + GV+ + ++ ++
Sbjct: 611 LMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKY 670
Query: 62 SSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDD----EQILMWRGKDWKSMYPEPPS 117
LVK+ K + KK+ L+ VL+S D IL++RGKD++ PS
Sbjct: 671 RELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQR-----PS 725
Query: 118 FSNPVDL 124
P +L
Sbjct: 726 MLRPKNL 732
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 25 EADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAK 83
EA LRR +S+ P L ++ L + +E S L K+ K G+ ++ +++
Sbjct: 422 EATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAED 481
Query: 84 LKELVPCVLLSFDDEQILMWRGKDWKS 110
LK+L +LLS + + ++ +RGK++ S
Sbjct: 482 LKKLTGGILLSRNKDFLVFYRGKNFLS 508
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 2 LWKPAAPVYPKLIQEAPEG----LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57
L P P Y + P G LT E LR+ K L L +N + L +
Sbjct: 386 LLPPKIPDYKTPFRLLPTGMRSRLTNAEMTNLRKLAKKLPCHFALGRNRNHQGLASTILK 445
Query: 58 AFEGSSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+E S + K+ K G+ ++ K + +LK L VLL + I+++RGKD+
Sbjct: 446 VWEKSLVAKIAVKRGIQNTNNKLMADELKMLTGGVLLLRNKYYIVIYRGKDF 497
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 18 PEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDY 77
PE L+ L+ + + + + K GV+ +RD+ + + +++ C+G
Sbjct: 97 PEYLSPEFMTALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKL 156
Query: 78 KKLGAKLKELVPCVLLSFDDEQI--LMWRGKDWKSMYPEPPSFSNPVD 123
+ + K+ + V+++ +E + +++RG+++ Y P N ++
Sbjct: 157 RPMAEKVARMSGAVVIAVTEETMSFILYRGRNFSHGYQPPSRIENMLN 204
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 11 PKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK 70
P Q PE +T E R+ G + L + GV+ V ++ ++ LVK+ K
Sbjct: 624 PSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIILK 683
Query: 71 GMHASDYKKLGAKLKELVPCVLLSFDD----EQILMWRGKDWKSMYPEPPSFSNPVDL 124
KK+ L+ VL+S D I+++RGKD++ PS P +L
Sbjct: 684 AKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQR-----PSMLRPKNL 736
>gi|292493154|ref|YP_003528593.1| hypothetical protein Nhal_3154 [Nitrosococcus halophilus Nc4]
gi|291581749|gb|ADE16206.1| protein of unknown function UPF0044 [Nitrosococcus halophilus
Nc4]
Length = 96
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKG 71
LTK++ LR SL P+ + +NGV ++ ++ NA E L+K+ +G
Sbjct: 3 LTKNQIRHLRALAHSLKPVVIIGQNGVTEAVLEEINNALEHHELIKIKIQG 53
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKK 79
L + EA LRR + L P L ++ L + +E SS+ K++ K G+ + ++
Sbjct: 313 LGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLWEKSSIAKISLKRGVQLTTSER 372
Query: 80 LGAKLKELVPCVLLSFDDEQILMWRGKDWKS 110
+ +K+L +LLS + + ++ +RGKD+ S
Sbjct: 373 MAEDIKKLTGGMLLSRNKDFLVFYRGKDFLS 403
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 32 KGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCV 91
K K+ +P+ + G+Y ++++ ++ V+++C K++G L+ L +
Sbjct: 239 KNKNYVPV---GRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETLERLSGGI 295
Query: 92 LLSFDD-EQILMWRGKDWK 109
++ I+MWRG+++K
Sbjct: 296 VIDIHQGTTIIMWRGRNYK 314
>gi|217970149|ref|YP_002355383.1| hypothetical protein Tmz1t_1734 [Thauera sp. MZ1T]
gi|217507476|gb|ACK54487.1| protein of unknown function UPF0044 [Thauera sp. MZ1T]
Length = 150
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKL 80
L+ E ELR + L P+ +A NG+ ++ ++ A + L+KV +G + L
Sbjct: 4 LSPAERSELRARAHHLNPVVTVAGNGLTPAVLAEIERALQAHELIKVKVQGAEREQREAL 63
Query: 81 GAKLKELVPCVLLSFDDEQILMWRGK--DWKSMYP 113
+L V + +++WR + D KS P
Sbjct: 64 MQELCAAVDAAPVQHIGSILVVWRARREDDKSSAP 98
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 17 APEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKG-MHAS 75
P LT E LRR +L L ++ L + +E + K+ K H +
Sbjct: 429 VPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNT 488
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
D + + ++KEL LLS D E I+ +RGKD+
Sbjct: 489 DSELITEEVKELTGGTLLSRDKESIVFYRGKDF 521
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 18 PEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKG-MHASD 76
P LT E LRR +L L ++ L + +E + K+ K H +D
Sbjct: 417 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 476
Query: 77 YKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ + ++KEL LLS D E I+ +RGKD+
Sbjct: 477 SELITEEVKELTGGTLLSRDKESIVFYRGKDF 508
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 17 APEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKG-MHAS 75
P LT E LRR +L L ++ L + +E + K+ K H +
Sbjct: 429 VPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNT 488
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
D + + ++KEL LLS D E I+ +RGKD+
Sbjct: 489 DSELITEEVKELTGGTLLSRDKESIVFYRGKDF 521
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 17 APEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKG-MHAS 75
P LT E LRR +L L ++ L + +E + K+ K H +
Sbjct: 332 VPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNT 391
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVD 123
D + + ++KEL LLS D E I+ +RGKD+ PP+ S ++
Sbjct: 392 DSELITEEVKELTGGTLLSRDKESIVFYRGKDFL-----PPAVSLAIE 434
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 17 APEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKG-MHAS 75
P LT E LRR +L L ++ L + +E + K+ K H +
Sbjct: 422 VPPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNT 481
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
D + + ++KEL LLS D E I+ +RGKD+
Sbjct: 482 DSELITEEVKELTGGTLLSRDKESIVFYRGKDF 514
>gi|419780781|ref|ZP_14306622.1| peptidase, S9A/B/C family, catalytic domain protein [Streptococcus
oralis SK100]
gi|383184954|gb|EIC77459.1| peptidase, S9A/B/C family, catalytic domain protein [Streptococcus
oralis SK100]
Length = 326
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 104/266 (39%), Gaps = 41/266 (15%)
Query: 16 EAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHAS 75
E PE +E+++ S+LP + + ++ VR FEG++ KV +
Sbjct: 18 EVPEDFDAFWNEEVKKV--SVLPAYQWEEKDFHIPQVRCYELTFEGTNEGKVYAR----- 70
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGT 135
+ K +E VP ++ F M RG DW M + V +D+ G + S
Sbjct: 71 ---VVLPKTEEKVP-LIFHFHG---YMGRGWDWADMLAYTVAGYGVVSMDVRGQSGYSQD 123
Query: 136 PSDDPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSY 195
P T++ + + A+E + L ++ L L++ V + + SY
Sbjct: 124 GLRSPLGNTVKG-----HIIRGAVEGREHLFYKDVYLDIYQLIEIVASLPQVDEERLSSY 178
Query: 196 PA--------LVLSREDGASSSMAEY----------EDGSQSENYDEDEFYPEDDFNDDD 237
A + + ++A Y E G+ SE YDE Y F D
Sbjct: 179 GASQGGALALVAAALNPRIQKTVAIYPFLSDFRRVIEIGNTSEAYDELFRY----FKFHD 234
Query: 238 EFYDSDSSDVVPLGSLPVDHIAERLQ 263
F++++ + L + V ++A R+Q
Sbjct: 235 PFHETEEEIMATLAYIDVKNLAHRIQ 260
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 17 APEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCK-GMHAS 75
P LT E LRR + L L ++ L + +E + K+ K G +
Sbjct: 448 VPPKLTDREMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRGPYCI 507
Query: 76 DYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
D + + +LK L LLS D+E I+++RGKD+
Sbjct: 508 DSELVSEELKGLTGGTLLSRDNESIVLYRGKDF 540
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,642,786,761
Number of Sequences: 23463169
Number of extensions: 205855046
Number of successful extensions: 814926
Number of sequences better than 100.0: 504
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 810387
Number of HSP's gapped (non-prelim): 3309
length of query: 265
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 125
effective length of database: 9,074,351,707
effective search space: 1134293963375
effective search space used: 1134293963375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)