BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024576
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RQ8|A Chain A, Solution Structure Of The Hypothetical Protein Sav1595
           From Staphylococcus Aureus, A Putative Rna Binding
           Protein
          Length = 104

 Score = 34.3 bits (77), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query: 21  LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKL 80
           LT  +   LR    ++ PI ++ K G+   +++ + +  E   L+KV+    +  D K+L
Sbjct: 2   LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61

Query: 81  GAKLKELVPCVLLSFDDEQILMWR 104
              L E     L+      I+++R
Sbjct: 62  AETLSEATRSELVQVIGSMIVIYR 85


>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain
 pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain In Complex With Adp
          Length = 536

 Score = 30.8 bits (68), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)

Query: 40  CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 99
           C  A  G  +  V + +  F    L  V+CK +  SD KK+ A LK  +  V     +E 
Sbjct: 428 CACASTGGLVDTVIEGKTGFHMGRL-SVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 486

Query: 100 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 132
           +       L W+G  K+W+++          + L +AG A G
Sbjct: 487 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 519


>pdb|4F79|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase Mutant
           (E375q) In Complex With Salicin 6-Phosphate
 pdb|4GPN|A Chain A, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
           Mutant) From Streptococcus Mutans Ua150 In Complex With
           Gentiobiose 6-Phosphate.
 pdb|4GPN|B Chain B, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
           Mutant) From Streptococcus Mutans Ua150 In Complex With
           Gentiobiose 6-Phosphate
          Length = 480

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 25/113 (22%)

Query: 55  VRNAFEGSSLVKVNCKGMHASDYK--KLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMY 112
           V+N F   ++ +V   GM   DY+   LGA +KE++  V    D++ + +     W    
Sbjct: 377 VQNGF--GAIDQVEADGMVHDDYRIDYLGAHIKEMIKAV----DEDGVELMGYTPWGC-- 428

Query: 113 PEPPSFSNPVDLDIAGDADGSG------TPSDDPSQGTIRSSPKMISLWKRAI 159
                    +DL  AG  +            DD  +GT++ SPK+   W + +
Sbjct: 429 ---------IDLVSAGTGEMRKRYGFIYVDKDDEGKGTLKRSPKLSFNWYKEV 472


>pdb|4F66|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase From
           Streptococcus Mutans Ua159 In Complex With
           Beta-D-Glucose-6-Phosphate.
 pdb|4F66|B Chain B, The Crystal Structure Of 6-Phospho-Beta-Glucosidase From
           Streptococcus Mutans Ua159 In Complex With
           Beta-D-Glucose-6-Phosphate
          Length = 480

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 25/113 (22%)

Query: 55  VRNAFEGSSLVKVNCKGMHASDYK--KLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMY 112
           V N F   ++ +V   GM   DY+   LGA +KE++  V    D++ + +     W    
Sbjct: 377 VENGF--GAIDQVEADGMVHDDYRIDYLGAHIKEMIKAV----DEDGVELMGYTPWGC-- 428

Query: 113 PEPPSFSNPVDLDIAGDADGSG------TPSDDPSQGTIRSSPKMISLWKRAI 159
                    +DL  AG  +            DD  +GT++ SPK+   W + +
Sbjct: 429 ---------IDLVSAGTGEMRKRYGFIYVDKDDEGKGTLKRSPKLSFNWYKEV 472


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,611,487
Number of Sequences: 62578
Number of extensions: 299514
Number of successful extensions: 532
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 5
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)