BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024576
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 202/269 (75%), Gaps = 11/269 (4%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQE PEGLTK EA E R KGKSL PICKL+KNGVY++LV+DVR+AFE
Sbjct: 301 MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 360
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
SSLVKV+C G+ SDYKK+GAKLKELVPCVLLSFDDEQILMWRG++WKS + + P +
Sbjct: 361 LSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPS 420
Query: 121 PVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
+ + + D S PS++ + T SSPKMISLW+RA+ES+KA++L+E++LGPDDL
Sbjct: 421 LSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVILEELDLGPDDL 480
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDD 237
LKKVEE EG S AAEH+Y A+VLS DGA+ + +D S+ E+Y + D + DD
Sbjct: 481 LKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSE-------EYYSDIDDDFDD 533
Query: 238 EFYDSDSSDVV-PLGSLPVDHIAERLQRK 265
E D +S D V P+GSLPVD I +L+ +
Sbjct: 534 ECSDDESLDPVGPVGSLPVDKIVRKLRER 562
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/279 (54%), Positives = 193/279 (69%), Gaps = 17/279 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLI+EAP+G TK EADE+RRKG+ LLPICKLAKNG+Y+TLV+DVR+AFE
Sbjct: 332 MLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFE 391
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM RGK+WKS Y +P +
Sbjct: 392 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIP 451
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEI---NL 172
V +L + + S SD +Q IR PKM LWK A++S+ AL+LD+ NL
Sbjct: 452 KVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANNL 511
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY---EDGSQSENYDEDEFY 228
PD LL VEEF SQA EHS+PAL+++ D ++ S+ AEY E + +E +
Sbjct: 512 TPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEYMNDEPETSVAGNEEGQLE 571
Query: 229 PEDDFNDDDEFYDSDSSD----VVPLGSLPVDHIAERLQ 263
D DD+ F D D + VPLGSLP+D + ERL
Sbjct: 572 QSPDLRDDEHF-DVDMFERLESSVPLGSLPIDSMIERLN 609
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 265 bits (676), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 194/280 (69%), Gaps = 19/280 (6%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYPKLIQEAPEGLTK EADE+RR+GK LLPICKLAKNG+Y+ LVRDVR+AFE
Sbjct: 328 MLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFE 387
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
GS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM+RGK+WKS YP+P +
Sbjct: 388 GSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIP 447
Query: 121 PV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---L 172
+ ++ ++ D S +DD + +R PKM LW AIES+ AL+LD+ L
Sbjct: 448 KIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIESSVALMLDDAEVDAL 507
Query: 173 GPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY-----EDGS---QSENYD 223
PD LL +VE+F SQ EHS+PA++++ ++ + AEY E G+ Q +
Sbjct: 508 TPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTEDEPETGTLEPQQHEFT 567
Query: 224 EDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 263
E EDD +DD +SS VPLG+LP+D + ++L
Sbjct: 568 ESSDVAEDDHFEDDMLKRLESS--VPLGALPIDAVVKQLN 605
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 96/115 (83%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+LIQ+ PEGLT+ EA +RRKG+ L+PICKL KNGVY LV++V+ AFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEP 115
LV+++C+GM SD++K+GAKLK+LVPCVL+SF++EQIL+WRG++WKS P
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTP 455
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 92/113 (81%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYP+L+++ P+GLT EA+++R++G+ L PICKL KNGVYL LV+ VR AFE
Sbjct: 283 MLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFE 342
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC LLSF+ E ILMWRG DWKS P
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLP 395
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 78
E LTK E DEL + + ++G+ ++ ++ + ++ + K+ CKG+ D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 79 KLGAKLKELVPCVLLSFDDEQILMWRGKDW----KSMYP 113
+ +L+E V ++ I ++RG+++ + +YP
Sbjct: 243 NVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYP 281
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+L+ + P GLT EA E+R +G L PICKL KNGVY LV VR AFE
Sbjct: 283 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 342
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 113
LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS P
Sbjct: 343 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 395
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 78
E LTK E EL + + ++G+ ++ ++ + ++ + K+ CKG+ D
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 79 KLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSF 118
+ +L+E V ++ I ++RG+++ Y P F
Sbjct: 243 NICHQLEEKVGGKVIHRQGGVIFLFRGRNYN--YRTRPCF 280
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 82/108 (75%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPA PVYP+LI+ EGLT E E+R+KG + + KLAKNG Y +LV VR+AF
Sbjct: 257 MLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFL 316
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
LV+++ KG+ SDY+K+G KL++LVPC+++SFD EQI++WRGKD+
Sbjct: 317 TDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 364
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 37/67 (55%)
Query: 42 LAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQIL 101
L ++G+ ++ D+ N ++ V+V C G+ D + + +L++ +++ Q++
Sbjct: 180 LGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLI 239
Query: 102 MWRGKDW 108
++RG+ +
Sbjct: 240 LYRGRHY 246
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 83/109 (76%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ +GL+ E +R+KG ++ + KLAKNG Y +LV VR+AF
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFL 318
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWK 109
S LV+++C G+ DYKK+GAKL++LVPC+L++FD EQ+++WRGKD+K
Sbjct: 319 VSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYK 367
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 14 IQEAPEGLTKHEADELRRKGKSLLPICK---------LAKNGVYLTLVRDVRNAFEGSSL 64
++E +G + EA+ K L+ +C+ L ++G+ ++ DV N ++ +
Sbjct: 150 VREKIQGASLTEAER-----KFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEA 204
Query: 65 VKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
V+V C G+ D K + L++ ++S ++++RG+++
Sbjct: 205 VRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP AP+YP+L+Q +GLT + ELR G + P+ KL +NGVY+ +V VR AF+
Sbjct: 245 MLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFK 304
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + +SD KK+G KL++LVPCV L F DEQI++WRGK
Sbjct: 305 TVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 350
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP P+YP+L++ +GL E E+R +G + KL +NGVY+ +V VR FE
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + SD K++G KLKE+VPCV + F DEQI++WRGK
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 19 EGLTKHEADEL--RRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASD 76
E LT+ E EL R + L K GV ++ D+ N ++ + V++ C G+ D
Sbjct: 141 ETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLD 200
Query: 77 YKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
+ L+E ++ + ++++RG+++
Sbjct: 201 MDNICFHLEEKSGGKIVYRNINILVLYRGRNY 232
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYK 78
E LT+ E RR G+ + + L + G++ ++ ++ ++ +VKV K
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIM 621
Query: 79 KLGAKLKELVPCVLLSFD----DEQILMWRGKDWKSMYPEPPSFSN 120
+ L+ +L++ + I+++RGK+++ P SFSN
Sbjct: 622 YAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRR--PAKSSFSN 665
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 6 AAPVYPKLIQEAPEGLTKHEADE----LRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG 61
P + ++ P G+ ADE LR+ + L L +N L + +E
Sbjct: 335 VVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEK 394
Query: 62 SSLVKVNCK-GMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 108
S + KV K G+ ++++++ LK L ++ + + I+++RGKD+
Sbjct: 395 SLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDF 442
>sp|Q9SR02|MED14_ARATH Mediator of RNA polymerase II transcription subunit 14
OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
Length = 1703
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 131 DGSGTPS--DDPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEF---E 185
DGSG P +DPS I + K+ R +E D++NL D++K V F E
Sbjct: 558 DGSGKPQSFNDPSN--ILRAKKIDIGQIRILE-------DDLNLITSDVVKFVSSFSDAE 608
Query: 186 GISQAAEHSYPALV---LSREDGASSSMAEYEDG 216
GI+QA+ H P LV L+ G+ S + DG
Sbjct: 609 GINQASGHRQPGLVDEALTEMSGSQLSFSSVVDG 642
>sp|Q42968|SSG1_ORYGL Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza glaberrima GN=WAXY PE=1 SV=1
Length = 609
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 40 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 99
C A G + V + + F L VNCK + SD KK+ A LK + V +E
Sbjct: 501 CACASTGGLVDTVIEGKTGFHMGRL-SVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 559
Query: 100 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 132
+ L W+G K+W+++ + L +AG A G
Sbjct: 560 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
>sp|Q0DEV5|SSG1_ORYSJ Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 40 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 99
C A G + V + + F L V+CK + SD KK+ A LK + V +E
Sbjct: 501 CACASTGGLVDTVIEGKTGFHMGRL-SVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 559
Query: 100 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 132
+ L W+G K+W+++ + L +AG A G
Sbjct: 560 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
>sp|A2Y8X2|SSG1_ORYSI Granule-bound starch synthase 1, chloroplastic/amyloplastic
OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2
Length = 609
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 40 CKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 99
C A G + V + + F L V+CK + SD KK+ A LK + V +E
Sbjct: 501 CACASTGGLVDTVIEGKTGFHMGRL-SVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 559
Query: 100 I-------LMWRG--KDWKSMYPEPPSFSNPVDLDIAGDADG 132
+ L W+G K+W+++ + L +AG A G
Sbjct: 560 VRNCMNQDLSWKGPAKNWENVL---------LGLGVAGSAPG 592
>sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain
168) GN=yqeI PE=4 SV=1
Length = 96
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKV----NC 69
LT + LR K L PI ++ K GV +++ + A E L+KV NC
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQVGKGGVNDNMIKQIAEALEARELIKVSVLQNC 54
>sp|Q39W79|ILVD_GEOMG Dihydroxy-acid dehydratase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=ilvD PE=3 SV=1
Length = 553
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 15/189 (7%)
Query: 39 ICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDE 98
I L +NGV + R AFE + V + G + L + V L +FD
Sbjct: 237 IVDLVRNGVTPRQIL-TRAAFENAIRVDLALGGSSNTVLHLLAIAREAGVDLPLETFD-- 293
Query: 99 QILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQGTIRSSPKMISLWKRA 158
IL SM P F DLD AG G GTI+ SP ++ L R
Sbjct: 294 -ILSKETPQIASMNPAGEYFME--DLDAAGGVVGV----LKQLGGTIKDSPTVLGLTTRE 346
Query: 159 IESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQ 218
+ ST V + + D +KK GI+ + P + ++ G S+ M ++E
Sbjct: 347 LASTVESVDERVIRPVSDPVKKE---GGIAVLFGNLAPKGAVVKQSGVSAPMMQFE--GT 401
Query: 219 SENYDEDEF 227
+ +D +E
Sbjct: 402 ARCFDSEEL 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,081,330
Number of Sequences: 539616
Number of extensions: 4873057
Number of successful extensions: 21641
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 20518
Number of HSP's gapped (non-prelim): 830
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)