Query 024576
Match_columns 265
No_of_seqs 59 out of 61
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.5 2E-14 6.7E-19 112.8 8.7 86 21-106 3-88 (98)
2 1rq8_A Conserved hypothetical 99.5 4.3E-14 1.5E-18 112.4 10.6 93 20-112 1-93 (104)
3 3sbx_A Putative uncharacterize 65.0 5.1 0.00017 34.0 3.6 36 22-57 121-159 (189)
4 3qua_A Putative uncharacterize 58.1 7.4 0.00025 33.2 3.4 36 22-57 130-168 (199)
5 2a33_A Hypothetical protein; s 54.6 10 0.00034 32.5 3.7 64 18-87 117-191 (215)
6 1ydh_A AT5G11950; structural g 51.4 11 0.00037 32.4 3.4 64 18-87 113-187 (216)
7 1t35_A Hypothetical protein YV 45.0 10 0.00035 31.7 2.1 60 22-87 110-179 (191)
8 1lgh_B LH II, B800/850, light 44.9 13 0.00044 25.9 2.3 14 18-31 5-18 (45)
9 1nkz_B Light-harvesting protei 43.9 13 0.00043 25.5 2.1 13 19-31 1-13 (41)
10 1wi9_A Protein C20ORF116 homol 42.4 19 0.00065 27.1 3.1 36 151-186 8-47 (72)
11 2ozt_A TLR1174 protein; struct 40.1 55 0.0019 28.8 6.2 64 23-87 121-187 (332)
12 3rr1_A GALD, putative D-galact 33.3 75 0.0026 29.0 6.1 65 20-87 123-204 (405)
13 4h2h_A Mandelate racemase/muco 28.9 90 0.0031 27.8 5.7 63 24-87 156-222 (376)
14 3tji_A Mandelate racemase/muco 27.9 1.3E+02 0.0044 27.6 6.7 39 49-87 209-248 (422)
15 3mkc_A Racemase; metabolic pro 27.0 1.1E+02 0.0038 27.6 6.0 63 25-87 164-232 (394)
16 1at3_A Herpes simplex virus ty 27.0 41 0.0014 30.4 3.1 49 145-204 85-134 (247)
17 3go2_A Putative L-alanine-DL-g 26.9 1.2E+02 0.0041 27.5 6.3 39 49-87 200-239 (409)
18 3jva_A Dipeptide epimerase; en 26.3 1.2E+02 0.0039 26.9 5.9 61 25-86 146-208 (354)
19 3sbf_A Mandelate racemase / mu 26.0 1.5E+02 0.005 26.8 6.6 39 49-87 188-227 (401)
20 2og9_A Mandelate racemase/muco 25.9 1.5E+02 0.0052 26.4 6.7 62 25-87 169-233 (393)
21 3dg3_A Muconate cycloisomerase 25.2 1.3E+02 0.0045 26.6 6.1 61 26-87 147-211 (367)
22 3mqt_A Mandelate racemase/muco 25.1 1.3E+02 0.0043 27.2 6.1 63 25-87 159-227 (394)
23 3bpj_A Eukaryotic translation 23.9 22 0.00075 26.5 0.7 56 21-87 11-66 (80)
24 2pp0_A L-talarate/galactarate 23.5 1.8E+02 0.0062 26.0 6.7 66 21-87 174-246 (398)
25 2nql_A AGR_PAT_674P, isomerase 23.4 1.9E+02 0.0064 25.7 6.8 61 25-87 171-234 (388)
26 3m6z_A Topoisomerase V; helix- 23.4 26 0.00089 32.3 1.2 32 157-188 347-378 (380)
27 2fcw_A Alpha-2-macroglobulin r 23.3 43 0.0015 27.1 2.3 28 147-183 5-32 (109)
28 1vzv_A Assemblin, varicella-zo 22.4 49 0.0017 29.4 2.7 49 144-204 65-115 (221)
29 3kw2_A Probable R-RNA methyltr 22.4 41 0.0014 29.3 2.2 25 18-45 199-224 (257)
30 3v5c_A Mandelate racemase/muco 22.2 2.2E+02 0.0076 25.7 7.1 63 24-87 154-227 (392)
31 2chr_A Chloromuconate cycloiso 22.2 1.9E+02 0.0066 25.3 6.5 61 26-87 151-214 (370)
32 3i6e_A Muconate cycloisomerase 21.8 1.7E+02 0.0059 26.2 6.3 61 25-87 155-218 (385)
33 1o1z_A GDPD, glycerophosphodie 21.5 1.8E+02 0.006 24.1 5.8 61 19-96 75-135 (234)
34 3dip_A Enolase; structural gen 21.4 1.9E+02 0.0065 26.2 6.5 64 24-87 162-239 (410)
35 3t6c_A RSPA, putative MAND fam 21.0 1.9E+02 0.0066 26.7 6.5 38 50-87 228-266 (440)
36 4h51_A Aspartate aminotransfer 20.5 79 0.0027 28.7 3.8 43 20-87 371-413 (420)
37 2opj_A O-succinylbenzoate-COA 20.4 2.4E+02 0.0083 24.8 6.8 66 21-87 79-150 (327)
38 4e5t_A Mandelate racemase / mu 20.4 1.6E+02 0.0055 26.6 5.8 39 49-87 195-234 (404)
39 2qgy_A Enolase from the enviro 20.3 2.1E+02 0.0073 25.5 6.5 66 21-87 148-220 (391)
40 1uw4_A UPF3X; nonsense mediate 20.2 41 0.0014 25.5 1.6 17 13-29 5-21 (91)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.53 E-value=2e-14 Score=112.83 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHcCcCcccccccccccchhhHHHHHHHHhccCceEEEeccCCCcchHHHHHHHhhhccCeEEEeecCcEE
Q 024576 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQI 100 (265)
Q Consensus 21 LT~EE~~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~~ELVKIdCkg~~~sD~kKiG~kLkdLvpciLlsfd~e~I 100 (265)
||..|+..||..+.+|+|++.+||||+-.++++.+++||+.+|||||-|.+....|.+.++..|.+.++|.+|.+-|..+
T Consensus 3 Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~ 82 (98)
T 1jo0_A 3 LSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHIL 82 (98)
T ss_dssp CCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 024576 101 LMWRGK 106 (265)
Q Consensus 101 ImwRGK 106 (265)
|+||+.
T Consensus 83 vLyR~~ 88 (98)
T 1jo0_A 83 VLYRPS 88 (98)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999987
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.53 E-value=4.3e-14 Score=112.41 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHcCcCcccccccccccchhhHHHHHHHHhccCceEEEeccCCCcchHHHHHHHhhhccCeEEEeecCcE
Q 024576 20 GLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQ 99 (265)
Q Consensus 20 GLT~EE~~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~~ELVKIdCkg~~~sD~kKiG~kLkdLvpciLlsfd~e~ 99 (265)
.||..|+..||..|-+|+|++.+||||+-.++++.|.+||+.+|||||-|.+....|.+.++..|.+.++|.+|..-|..
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 38999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EEEEecCCCCCCC
Q 024576 100 ILMWRGKDWKSMY 112 (265)
Q Consensus 100 IImwRGKdyk~~~ 112 (265)
+|+||++.-++.+
T Consensus 81 ~VLYR~~~~~~~i 93 (104)
T 1rq8_A 81 IVIYRESKENKEI 93 (104)
T ss_dssp EEEEECCCSCCSC
T ss_pred EEEEeCCCCCCce
Confidence 9999987633333
No 3
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=65.04 E-value=5.1 Score=33.99 Aligned_cols=36 Identities=19% Similarity=-0.047 Sum_probs=30.1
Q ss_pred CHHHH---HHHHHcCcCcccccccccccchhhHHHHHHH
Q 024576 22 TKHEA---DELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57 (265)
Q Consensus 22 T~EE~---~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~ 57 (265)
|.||. .++++.|++-+|+..|+.||+|..+++.+..
T Consensus 121 TLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~ 159 (189)
T 3sbx_A 121 TLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSE 159 (189)
T ss_dssp HHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHH
Confidence 55655 5668999999999999999999999987753
No 4
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=58.12 E-value=7.4 Score=33.25 Aligned_cols=36 Identities=25% Similarity=0.108 Sum_probs=30.5
Q ss_pred CHHHH---HHHHHcCcCcccccccccccchhhHHHHHHH
Q 024576 22 TKHEA---DELRRKGKSLLPICKLAKNGVYLTLVRDVRN 57 (265)
Q Consensus 22 T~EE~---~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~ 57 (265)
|.||. .++++.|++-+|+..|+.+|+|..+++.++.
T Consensus 130 TldEl~e~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~ 168 (199)
T 3qua_A 130 TLEEFFEAWTAGYLGMHDKPLILLDPFGHYDGLLTWLRG 168 (199)
T ss_dssp HHHHHHHHHHHHHTTSCCCCEEEECTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEcCCccchHHHHHHHH
Confidence 55554 5688999999999999999999999998763
No 5
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=54.56 E-value=10 Score=32.53 Aligned_cols=64 Identities=28% Similarity=0.347 Sum_probs=42.6
Q ss_pred CCCC-CHHHHH---HHHHcCcCcccccccccccchhhHHHHHHHH----h---ccCceEEEeccCCCcchHHHHHHHhhh
Q 024576 18 PEGL-TKHEAD---ELRRKGKSLLPICKLAKNGVYLTLVRDVRNA----F---EGSSLVKVNCKGMHASDYKKLGAKLKE 86 (265)
Q Consensus 18 pEGL-T~EE~~---emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~a----f---e~~ELVKIdCkg~~~sD~kKiG~kLkd 86 (265)
|-|. |.||.. ++++.|++-+|+..|+.+|+|..+++.+... | +...++.+ ..|...+...|+.
T Consensus 117 pGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~------~d~~ee~~~~l~~ 190 (215)
T 2a33_A 117 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVS------APTAKELVKKLEE 190 (215)
T ss_dssp SCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEE------ESSHHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEE------eCCHHHHHHHHHH
Confidence 4442 666665 5799999999999999999999999876433 2 12223322 2456677777765
Q ss_pred c
Q 024576 87 L 87 (265)
Q Consensus 87 L 87 (265)
.
T Consensus 191 ~ 191 (215)
T 2a33_A 191 Y 191 (215)
T ss_dssp -
T ss_pred h
Confidence 3
No 6
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=51.40 E-value=11 Score=32.42 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=43.2
Q ss_pred CCCC-CHHHHH---HHHHcCcCcccccccccccchhhHHHHHHHHhcc-------CceEEEeccCCCcchHHHHHHHhhh
Q 024576 18 PEGL-TKHEAD---ELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG-------SSLVKVNCKGMHASDYKKLGAKLKE 86 (265)
Q Consensus 18 pEGL-T~EE~~---emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~-------~ELVKIdCkg~~~sD~kKiG~kLkd 86 (265)
|-|. |.||.. ++.+.|++-+|+..|+.+|+|..+++.+....+. ..++.+ ..|.+.+...|+.
T Consensus 113 pGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~------~d~~ee~~~~l~~ 186 (216)
T 1ydh_A 113 PGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVS------APTAKELMEKMEE 186 (216)
T ss_dssp SCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEE------ESSHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEE------eCCHHHHHHHHHH
Confidence 4442 666554 5688999999999999999999999976543321 223322 2456677777765
Q ss_pred c
Q 024576 87 L 87 (265)
Q Consensus 87 L 87 (265)
.
T Consensus 187 ~ 187 (216)
T 1ydh_A 187 Y 187 (216)
T ss_dssp C
T ss_pred h
Confidence 3
No 7
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=44.98 E-value=10 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=39.6
Q ss_pred CHHH---HHHHHHcCcCcccccccccccchhhHHHHHHHHhcc-------CceEEEeccCCCcchHHHHHHHhhhc
Q 024576 22 TKHE---ADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEG-------SSLVKVNCKGMHASDYKKLGAKLKEL 87 (265)
Q Consensus 22 T~EE---~~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~-------~ELVKIdCkg~~~sD~kKiG~kLkdL 87 (265)
|.|| +.++++.|++-+|+..|+.+|+|..+++-++...+. .+++.+ ..|.+.+...|+..
T Consensus 110 Tl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~------~~~~~e~~~~l~~~ 179 (191)
T 1t35_A 110 TYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHS------SSRPDELIEQMQNY 179 (191)
T ss_dssp HHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEE------ESSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEE------eCCHHHHHHHHHHh
Confidence 4555 445667888889999999999999999876533322 122322 24566666677653
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=44.92 E-value=13 Score=25.93 Aligned_cols=14 Identities=36% Similarity=0.404 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHHH
Q 024576 18 PEGLTKHEADELRR 31 (265)
Q Consensus 18 pEGLT~EE~~emRk 31 (265)
+-|||++|++|+-+
T Consensus 5 ~tGLT~~EA~EfH~ 18 (45)
T 1lgh_B 5 LSGLTEEEAIAVHD 18 (45)
T ss_dssp SSSCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 57999999999865
No 9
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=43.87 E-value=13 Score=25.47 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHH
Q 024576 19 EGLTKHEADELRR 31 (265)
Q Consensus 19 EGLT~EE~~emRk 31 (265)
.|||++|++|+-+
T Consensus 1 ~gLT~~EA~EfH~ 13 (41)
T 1nkz_B 1 ATLTAEQSEELHK 13 (41)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5999999999865
No 10
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=42.38 E-value=19 Score=27.13 Aligned_cols=36 Identities=14% Similarity=0.449 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhccccccccC----CCCchhHHHhhhhhhh
Q 024576 151 MISLWKRAIESTKALVLDEI----NLGPDDLLKKVEEFEG 186 (265)
Q Consensus 151 m~~lw~~aiess~al~ld~~----~l~pd~ll~~veef~~ 186 (265)
.+.-|-+.|.+.|.+.|+++ +|.-.+...|+++++.
T Consensus 8 ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~ 47 (72)
T 1wi9_A 8 FLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLT 47 (72)
T ss_dssp HHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHH
Confidence 56778999999999999998 9999999999998864
No 11
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A
Probab=40.11 E-value=55 Score=28.76 Aligned_cols=64 Identities=8% Similarity=0.107 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCcCcccccccccccch--hhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 23 KHEADELRRKGKSLLPICKLAKNGVY--LTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 23 ~EE~~emRk~Gl~l~~~~kLgRNGVY--~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
.+++..++..|.+.-- +|+|..++= ...|+.||+++-..--.+||+. +.+..+..+++..|+++
T Consensus 121 ~~~a~~~~~~G~~~~K-iKvg~~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~ 187 (332)
T 2ozt_A 121 LEQWQQSWQRGQTTFK-WKVGVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRH 187 (332)
T ss_dssp HHHHHHHHHTTCCEEE-EECSSSCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEE-EEeCCCChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhh
Confidence 4667778888975311 456654332 3568899999876666789997 77888888999999875
No 12
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=33.25 E-value=75 Score=29.00 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=46.9
Q ss_pred CCCHHH----HHHHHHcCcCccccccc-ccccc-----------hhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHH
Q 024576 20 GLTKHE----ADELRRKGKSLLPICKL-AKNGV-----------YLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGA 82 (265)
Q Consensus 20 GLT~EE----~~emRk~Gl~l~~~~kL-gRNGV-----------Y~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~ 82 (265)
+.|.|+ +..++..|.+. +|+ |..+. =...|+.||+++...--+.+|+. +.+..+..+++.
T Consensus 123 ~~~~e~~~~~a~~~~~~G~~~---iKl~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 123 GDRPADVIAGMKALQAGGFDH---FKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIK 199 (405)
T ss_dssp CSSHHHHHHHHHHHHHTTCCE---EEEESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCE---EEEecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHH
Confidence 356554 44567788764 344 43321 14678999999977767889998 888999999999
Q ss_pred Hhhhc
Q 024576 83 KLKEL 87 (265)
Q Consensus 83 kLkdL 87 (265)
.|+++
T Consensus 200 ~L~~~ 204 (405)
T 3rr1_A 200 ELEPY 204 (405)
T ss_dssp HHGGG
T ss_pred HHHhc
Confidence 99975
No 13
>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*
Probab=28.89 E-value=90 Score=27.81 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=45.2
Q ss_pred HHHHHHHHcCcCcccccccccccch--hhHHHHHHHHhccCc-eEEEecc-CCCcchHHHHHHHhhhc
Q 024576 24 HEADELRRKGKSLLPICKLAKNGVY--LTLVRDVRNAFEGSS-LVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 24 EE~~emRk~Gl~l~~~~kLgRNGVY--~glV~~Vr~afe~~E-LVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
+++..+++.|.+--- +|+|.+.+- ...|+.||+++.+.+ -++|||. +.+..+..+++..|+++
T Consensus 156 ~~a~~~~~~G~~~~K-iKvg~~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 222 (376)
T 4h2h_A 156 RQALEKQREGYSRLQ-VKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDI 222 (376)
T ss_dssp HHHHHHHHHTCSEEE-EECCSSCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTS
T ss_pred HHHHHHHhcCceEEE-EecCCCCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhc
Confidence 345666777875322 366776543 467888999985544 4799998 88899999999988764
No 14
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=27.86 E-value=1.3e+02 Score=27.59 Aligned_cols=39 Identities=8% Similarity=0.199 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 49 LTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 49 ~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
...|+.||+++-..--+.+|+. +.+..+..+++..|+++
T Consensus 209 ~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~ 248 (422)
T 3tji_A 209 VEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPF 248 (422)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4468999999987777889998 88999999999999975
No 15
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=26.99 E-value=1.1e+02 Score=27.61 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHHHHcCcCcccccccccc--cc--hhhHHHHHHHHhccCceEEEecc-CC-CcchHHHHHHHhhhc
Q 024576 25 EADELRRKGKSLLPICKLAKN--GV--YLTLVRDVRNAFEGSSLVKVNCK-GM-HASDYKKLGAKLKEL 87 (265)
Q Consensus 25 E~~emRk~Gl~l~~~~kLgRN--GV--Y~glV~~Vr~afe~~ELVKIdCk-g~-~~sD~kKiG~kLkdL 87 (265)
++..++..|.+.--+-|+|+. +. =...|+.||+++...--+.+|+. +. +..+..+++..|+++
T Consensus 164 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~ 232 (394)
T 3mkc_A 164 LLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDL 232 (394)
T ss_dssp HHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGG
T ss_pred HHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhc
Confidence 566677889765333244431 11 23578899999977777889998 77 788999999999975
No 16
>1at3_A Herpes simplex virus type II protease; serine protease, viral protease, HSV2 protease; HET: DFP; 2.50A {Human herpesvirus 2} SCOP: b.57.1.1
Probab=26.98 E-value=41 Score=30.37 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=31.7
Q ss_pred cccchhHHHHHHHHHhhccccccccCCCCchhHHHhhhhhhhhhhhhhcc-cCeEEeecCC
Q 024576 145 IRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHS-YPALVLSRED 204 (265)
Q Consensus 145 ~~~~pkm~~lw~~aiess~al~ld~~~l~pd~ll~~veef~~~sqa~ehs-~pa~~~s~~~ 204 (265)
..+||.++.+=++|-..|.+.-..- +|.|+. +++++ =|+ +|+|.+||--
T Consensus 85 ~I~s~~fl~il~~~a~~s~~~~~~~-~L~p~~---~ll~l-------l~~~LPsLSLSS~~ 134 (247)
T 1at3_A 85 LIACVQLERVLETAASAAIFERRGP-ALSREE---RLLYL-------ITNYLPSVSLSTKR 134 (247)
T ss_dssp EECCHHHHHHHHHHCCCCC--------CCSHH---HHHHH-------HHHHSCEEEEEEC-
T ss_pred EeccHHHHHHHHHHhChHHHhhcCC-CCCCCc---chhHH-------hhcccccceeeccc
Confidence 5789999999999998887766543 687874 22222 266 6999999965
No 17
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Probab=26.87 E-value=1.2e+02 Score=27.51 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 49 LTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 49 ~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
...|+.||+++-..--+.||+. +.+..+..+++..|+++
T Consensus 200 ~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~ 239 (409)
T 3go2_A 200 RAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADF 239 (409)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3579999999987778899998 78888999999999875
No 18
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=26.30 E-value=1.2e+02 Score=26.87 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=43.9
Q ss_pred HHHHHHHcCcCccccccccccc-chhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhh
Q 024576 25 EADELRRKGKSLLPICKLAKNG-VYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKE 86 (265)
Q Consensus 25 E~~emRk~Gl~l~~~~kLgRNG-VY~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkd 86 (265)
++..++..|.+.-- +|+|.+. -=...|+.||+++-..--+++|+. +.+..+..+++..|++
T Consensus 146 ~a~~~~~~G~~~~K-~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~ 208 (354)
T 3jva_A 146 KAVEKVKLGFDTLK-IKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALAD 208 (354)
T ss_dssp HHHHHHHTTCSEEE-EECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCeEE-EEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566677865322 3455442 235678999999977777899998 8888888899999987
No 19
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=26.03 E-value=1.5e+02 Score=26.83 Aligned_cols=39 Identities=8% Similarity=0.263 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 49 LTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 49 ~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
...|+.||+++-..--+.||+. +.+..+..+++..|+++
T Consensus 188 ~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~ 227 (401)
T 3sbf_A 188 LTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQY 227 (401)
T ss_dssp HHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4568999999977777889998 88999999999999875
No 20
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=25.92 E-value=1.5e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=44.0
Q ss_pred HHHHHHHcCcCcccccccccccc--hhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 25 EADELRRKGKSLLPICKLAKNGV--YLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 25 E~~emRk~Gl~l~~~~kLgRNGV--Y~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
++..+++.|.+.--+ |+|.... -...|+.||+++-..--+.||+. |.+..+..+++..|+++
T Consensus 169 ~a~~~~~~Gf~~vKi-k~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~ 233 (393)
T 2og9_A 169 NASASIERGIGGIKL-KVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPF 233 (393)
T ss_dssp HHHHHHHTTCCCEEE-ECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHcCCCEEEE-ecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445566777654333 5564322 24678999999966666799998 78889999999999875
No 21
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=25.16 E-value=1.3e+02 Score=26.62 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=43.8
Q ss_pred HHHHHHc-CcCcccccccccccc--hhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 26 ADELRRK-GKSLLPICKLAKNGV--YLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 26 ~~emRk~-Gl~l~~~~kLgRNGV--Y~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
+..++.. |.+.-- +|+|++.. =...|+.||+++...--++||+. +.+..+..+++..|+++
T Consensus 147 a~~~~~~~G~~~~K-~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 211 (367)
T 3dg3_A 147 AERIRETYGINTFK-VKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADL 211 (367)
T ss_dssp HHHHHHHHCCCEEE-EECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCccEEE-EeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455556 865321 35566543 35678999999966666799998 88889999999999874
No 22
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=25.13 E-value=1.3e+02 Score=27.15 Aligned_cols=63 Identities=11% Similarity=0.255 Sum_probs=44.8
Q ss_pred HHHHHHHcCcCcccccccccc--c--chhhHHHHHHHHhccCceEEEecc-CC-CcchHHHHHHHhhhc
Q 024576 25 EADELRRKGKSLLPICKLAKN--G--VYLTLVRDVRNAFEGSSLVKVNCK-GM-HASDYKKLGAKLKEL 87 (265)
Q Consensus 25 E~~emRk~Gl~l~~~~kLgRN--G--VY~glV~~Vr~afe~~ELVKIdCk-g~-~~sD~kKiG~kLkdL 87 (265)
++..++..|.+.--+-|+|+. + -=...|+.||+++...--+.||+. +. +..+..+++..|+++
T Consensus 159 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~ 227 (394)
T 3mqt_A 159 LIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDI 227 (394)
T ss_dssp HHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGG
T ss_pred HHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhc
Confidence 566677789764322244431 1 123578889999977777889998 77 788899999999985
No 23
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=23.91 E-value=22 Score=26.48 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHcCcCcccccccccccchhhHHHHHHHHhccCceEEEeccCCCcchHHHHHHHhhhc
Q 024576 21 LTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKEL 87 (265)
Q Consensus 21 LT~EE~~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~~ELVKIdCkg~~~sD~kKiG~kLkdL 87 (265)
-|.+|-.++|+.=... +....+..-|.+.++. |+|-.|+.++..|+|+|+..|..+
T Consensus 11 ~Tk~dF~~~~~~l~~k--l~~~~ks~~y~~f~~~---------lir~l~~~L~~~dikkv~s~l~~l 66 (80)
T 3bpj_A 11 SSRDDFTEFGKLLKDK--ITQYEKSLYYASFLEV---------LVRDVCISLEIDDLKKITNSLTVL 66 (80)
T ss_dssp CSHHHHHHHHHHHHHH--HGGGTTSTTHHHHHHH---------HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--HHhccCChhHHHHHHH---------HHHHHHccCCHHHHHHHHHHHHHH
Confidence 3888888888642221 4456777888877775 577889999999999999888654
No 24
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=23.47 E-value=1.8e+02 Score=26.04 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred CCHH----HHHHHHHcCcCcccccccccccc--hhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 21 LTKH----EADELRRKGKSLLPICKLAKNGV--YLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 21 LT~E----E~~emRk~Gl~l~~~~kLgRNGV--Y~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
++.+ ++..+++.|.+.--+ |+|.+.. =...|+.||+++-..--++||+. +.+..+..+++..|+++
T Consensus 174 ~~~e~~~~~a~~~~~~Gf~~vKi-k~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~ 246 (398)
T 2pp0_A 174 TPLDQVLKNVVISRENGIGGIKL-KVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQF 246 (398)
T ss_dssp SCHHHHHHHHHHHHHTTCSCEEE-ECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHhCCCeEEE-ecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 3565 455666777654333 5564332 24678899999966556799998 77888998999999875
No 25
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=23.40 E-value=1.9e+02 Score=25.71 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHHHHHHcCcCccccccccc-c-cchhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 25 EADELRRKGKSLLPICKLAK-N-GVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 25 E~~emRk~Gl~l~~~~kLgR-N-GVY~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
++..++..|.+.-- +|+|. + .. ...|+.||+++-..--+.||+. |.+..+..+++..|++.
T Consensus 171 ~a~~~~~~Gf~~vK-ik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~ 234 (388)
T 2nql_A 171 LAKYWQDRGFNAFK-FATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPF 234 (388)
T ss_dssp HHHHHHHTTCCEEE-EEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCEEE-EeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34556677855332 35564 2 33 7889999999976667889998 77888999999999875
No 26
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=23.38 E-value=26 Score=32.35 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=25.8
Q ss_pred HHHhhccccccccCCCCchhHHHhhhhhhhhh
Q 024576 157 RAIESTKALVLDEINLGPDDLLKKVEEFEGIS 188 (265)
Q Consensus 157 ~aiess~al~ld~~~l~pd~ll~~veef~~~s 188 (265)
..++...|.++|+-||.||+-=+.+|.|+.|.
T Consensus 347 ksvnrtlatlidehglspdaadeliehfesia 378 (380)
T 3m6z_A 347 KSVNRTLATLIDEHGLSPDAADELIEHFESIA 378 (380)
T ss_dssp HHHCHHHHHHHHTTCCCHHHHHHHHHHHC---
T ss_pred HhhhHHHHHHHHhcCCCcchHHHHHHHHHhhc
Confidence 34677789999999999999999999998764
No 27
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=23.26 E-value=43 Score=27.06 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHhhccccccccCCCCchhHHHhhhh
Q 024576 147 SSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEE 183 (265)
Q Consensus 147 ~~pkm~~lw~~aiess~al~ld~~~l~pd~ll~~vee 183 (265)
.-||...||+-|.++ |+++|+|-..=+|
T Consensus 5 ~EPkVq~LW~lA~~~---------NFT~~ELeSlK~E 32 (109)
T 2fcw_A 5 EEPRVIDLWDLAQSA---------NLTDKELEAFREE 32 (109)
T ss_dssp CSHHHHHHHHHHHTS---------CCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc---------CCCHHHHHHHHHH
Confidence 349999999999864 6999988553333
No 28
>1vzv_A Assemblin, varicella-zoster virus protease; hydrolase, serine protease, viral protease, varicella-zoster coat protein; 3.00A {Human herpesvirus 3} SCOP: b.57.1.1
Probab=22.42 E-value=49 Score=29.40 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=36.9
Q ss_pred ccccchhHHHHHHHHHhhccccccccCCCCchh-HHHhhhhhhhhhhhhhcc-cCeEEeecCC
Q 024576 144 TIRSSPKMISLWKRAIESTKALVLDEINLGPDD-LLKKVEEFEGISQAAEHS-YPALVLSRED 204 (265)
Q Consensus 144 ~~~~~pkm~~lw~~aiess~al~ld~~~l~pd~-ll~~veef~~~sqa~ehs-~pa~~~s~~~ 204 (265)
-..+||.++.+=.+|-..|.+.-... +|.|+. ||.. =|+ +|+|.+||--
T Consensus 65 G~I~s~~fl~il~~~a~~s~~~~~~~-~L~p~~~ll~l-----------l~~~LPslSLSS~~ 115 (221)
T 1vzv_A 65 GIVRCPQLHAVLFEAAHSNFFGNRDS-VLSPLERALYL-----------VTNYLPSVSLSSKR 115 (221)
T ss_dssp EEECCHHHHHHHHHHSCTTSSCHHHH-TTCSSHHHHHH-----------HHHHSCEEEEECSC
T ss_pred EEeccHHHHHHHHHHhChHHHHhcCC-CCCCCchhHHH-----------hhcccccceeeccc
Confidence 35789999999999999888776543 688865 3432 256 6999999964
No 29
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=22.35 E-value=41 Score=29.33 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCC-CCHHHHHHHHHcCcCcccccccccc
Q 024576 18 PEG-LTKHEADELRRKGKSLLPICKLAKN 45 (265)
Q Consensus 18 pEG-LT~EE~~emRk~Gl~l~~~~kLgRN 45 (265)
||| +|++|...+++.|.. -+.||.|
T Consensus 199 PEGGfs~~Ei~~~~~~Gf~---~vsLG~r 224 (257)
T 3kw2_A 199 PEGDFSPSEVESALLAGFA---PVSLGES 224 (257)
T ss_dssp CTTCCCHHHHHHHHHHTCE---EECCCSS
T ss_pred CCCCCCHHHHHHHHHCCCE---EEcCCCC
Confidence 887 999999999999974 4677775
No 30
>3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A*
Probab=22.20 E-value=2.2e+02 Score=25.72 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=44.9
Q ss_pred HHHHHHHHcCcCcccccccccccch----------hhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 24 HEADELRRKGKSLLPICKLAKNGVY----------LTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 24 EE~~emRk~Gl~l~~~~kLgRNGVY----------~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
+++..++..|.+.-= +|+|.++.+ ...|+.||+++-..--+.||+. +.+..+..+++..|+++
T Consensus 154 ~~a~~~~~~Gf~~~K-lKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~L~~~ 227 (392)
T 3v5c_A 154 EEAMQGYAKGQRHFK-IKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDV 227 (392)
T ss_dssp HHHHHHHHTTCCCEE-EECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTS
T ss_pred HHHHHHHHCCCCEEE-ECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHhcccC
Confidence 345556678876432 356776432 3467888998766666889998 88889999999999874
No 31
>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1
Probab=22.18 E-value=1.9e+02 Score=25.27 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHcCcCcccccccccccchh--hHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 26 ADELRRKGKSLLPICKLAKNGVYL--TLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 26 ~~emRk~Gl~l~~~~kLgRNGVY~--glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
+..+++.|.+.- =+|+|....-. ..|+.||+++...--++|||. +.+..+..+++..|+++
T Consensus 151 ~~~~~~~g~~~~-K~Kvg~~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 214 (370)
T 2chr_A 151 VEMIERRRHNRF-KVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEAL 214 (370)
T ss_dssp HHHHHTTSCCEE-EEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTT
T ss_pred HHHHhhccccee-ecccccCChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 345566665422 14667665543 458899999988888999999 88999999999999874
No 32
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=21.81 E-value=1.7e+02 Score=26.16 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=43.9
Q ss_pred HHHHHHHcCcCcccccccccccc--hhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 25 EADELRRKGKSLLPICKLAKNGV--YLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 25 E~~emRk~Gl~l~~~~kLgRNGV--Y~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
++..++..|.+.-- +|+|+..+ =...|+.||+++ ..--+.||+. +.+..+..+++..|+++
T Consensus 155 ~a~~~~~~G~~~~K-~Kvg~~~~~~d~~~v~avR~a~-~~~~l~vDan~~~~~~~A~~~~~~L~~~ 218 (385)
T 3i6e_A 155 LMERLRADGVGLIK-LKTGFRDHAFDIMRLELIARDF-PEFRVRVDYNQGLEIDEAVPRVLDVAQF 218 (385)
T ss_dssp HHHHHHHHTCCEEE-EECSSSCHHHHHHHHHHHHHHC-TTSEEEEECTTCCCGGGHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEE-EecCCCCHHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34555667865321 34566542 356789999999 6667889998 88999999999999874
No 33
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=21.46 E-value=1.8e+02 Score=24.11 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHcCcCcccccccccccchhhHHHHHHHHhccCceEEEeccCCCcchHHHHHHHhhhccCeEEEeec
Q 024576 19 EGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFD 96 (265)
Q Consensus 19 EGLT~EE~~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~~ELVKIdCkg~~~sD~kKiG~kLkdLvpciLlsfd 96 (265)
.-+|.+|...++ | ...-+.+.+-+.++..-.+-|+.|. ....+++...|+..-.+++.||+
T Consensus 75 ~d~T~~eL~~l~--~-------------~~iptL~evL~~~~~~~~l~iEiK~--~~~~~~v~~~l~~~~~vii~Sf~ 135 (234)
T 1o1z_A 75 RDATVSELKELT--D-------------GKITTLKEVFENVSDDKIINIEIKE--REAADAVLEISKKRKNLIFSSFD 135 (234)
T ss_dssp GGSCHHHHHHHT--T-------------TCCCBHHHHHHHSCTTSEEEEEECC--GGGHHHHHHHHTTCCSEEEEESC
T ss_pred ccCcHHHHhcCC--C-------------CCCCCHHHHHHhcccCCeEEEEeCC--ccHHHHHHHHHhccCCEEEEchh
Confidence 348999998887 3 3344556677777665567888885 45578888888885557777887
No 34
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=21.39 E-value=1.9e+02 Score=26.24 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=44.9
Q ss_pred HHHHHHHHcCcCcccc---c----cccccc------chhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 24 HEADELRRKGKSLLPI---C----KLAKNG------VYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 24 EE~~emRk~Gl~l~~~---~----kLgRNG------VY~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
+.+..++..|.+---+ . |+|++- -=...|+.||+++-..--+.||+. +.+..+..+++..|+++
T Consensus 162 ~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~ 239 (410)
T 3dip_A 162 VLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADY 239 (410)
T ss_dssp HHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGG
T ss_pred HHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4456777888754322 1 333210 013578999999987777889998 88899999999999975
No 35
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=20.96 E-value=1.9e+02 Score=26.65 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=32.9
Q ss_pred hHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 50 TLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 50 glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
..|+.||+++-..--+.||+. +.+..+..+++..|+++
T Consensus 228 ~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~ 266 (440)
T 3t6c_A 228 RLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPY 266 (440)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhc
Confidence 458899999987777889998 88899999999999875
No 36
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=20.48 E-value=79 Score=28.74 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHcCcCcccccccccccchhhHHHHHHHHhccCceEEEeccCCCcchHHHHHHHhhhc
Q 024576 20 GLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKEL 87 (265)
Q Consensus 20 GLT~EE~~emRk~Gl~l~~~~kLgRNGVY~glV~~Vr~afe~~ELVKIdCkg~~~sD~kKiG~kLkdL 87 (265)
|||.|+...||+.|.-+.| +| ||..-|++..+++++++.+.+-
T Consensus 371 gls~e~v~~L~e~~Vy~~~------~g-------------------Ris~Agl~~~ni~~~a~aI~~v 413 (420)
T 4h51_A 371 GLSKAQCEYCQNHNIFITV------SG-------------------RANMAGLTHETALMLAQTINDA 413 (420)
T ss_dssp CCCHHHHHHHHHTTEECCT------TC-------------------EEEGGGCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhCCEEEcC------CC-------------------EEEeccCCHHHHHHHHHHHHHH
Confidence 5888888888777654432 33 8888899999998888877653
No 37
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A*
Probab=20.42 E-value=2.4e+02 Score=24.79 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCHHHHHHHH-HcCcCccccccccccc----chhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 21 LTKHEADELR-RKGKSLLPICKLAKNG----VYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 21 LT~EE~~emR-k~Gl~l~~~~kLgRNG----VY~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
-+.|++..+. ..|.+.-- +|+|.+| -=...|+.||+++...--++||+. +.+..+..+++..|+++
T Consensus 79 ~~~e~~~~~~~~~G~~~~K-iKvg~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~ 150 (327)
T 2opj_A 79 VGPEEAARIVASSGCTTAK-VKVAERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRF 150 (327)
T ss_dssp CCHHHHHHHHHHHCCSEEE-EECCC------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHCCCCEEE-EEeCCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3778887777 47753321 3566543 224678999999977777899998 77888888888888873
No 38
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=20.38 E-value=1.6e+02 Score=26.60 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 49 LTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 49 ~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
...|+.||+++-..--+.||+. +.+..+..+++..|+++
T Consensus 195 ~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~ 234 (404)
T 4e5t_A 195 EAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAY 234 (404)
T ss_dssp HHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhc
Confidence 3578999999977777889988 78889999999999985
No 39
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=20.26 E-value=2.1e+02 Score=25.46 Aligned_cols=66 Identities=8% Similarity=0.072 Sum_probs=44.9
Q ss_pred CCHHH----HHHHHHcCcCcccccccccc--cchhhHHHHHHHHhccCceEEEecc-CCCcchHHHHHHHhhhc
Q 024576 21 LTKHE----ADELRRKGKSLLPICKLAKN--GVYLTLVRDVRNAFEGSSLVKVNCK-GMHASDYKKLGAKLKEL 87 (265)
Q Consensus 21 LT~EE----~~emRk~Gl~l~~~~kLgRN--GVY~glV~~Vr~afe~~ELVKIdCk-g~~~sD~kKiG~kLkdL 87 (265)
.+.++ +..++..|.+.-- +|.|.. ..-...|+.||+++-..--+.||+. |.+..+..+++..|+++
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vK-ik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~ 220 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIK-IYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSF 220 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEE-ECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-EccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45544 4556677754322 233433 2234678899999976666789998 77888999999999874
No 40
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=20.23 E-value=41 Score=25.54 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.4
Q ss_pred ccccCCCCCCHHHHHHH
Q 024576 13 LIQEAPEGLTKHEADEL 29 (265)
Q Consensus 13 li~~~pEGLT~EE~~em 29 (265)
.|+++|-+||.||..+.
T Consensus 5 VIRrLPP~LteeeF~~~ 21 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEH 21 (91)
T ss_dssp EEEEECTTCCHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHH
Confidence 48899999999998754
Done!