Query 024577
Match_columns 265
No_of_seqs 178 out of 1256
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04143 hypothetical protein; 100.0 5.7E-51 1.2E-55 367.4 21.2 217 3-253 34-261 (264)
2 cd02904 Macro_H2A_like Macro d 100.0 4.6E-47 9.9E-52 326.4 19.3 166 76-248 13-185 (186)
3 cd02907 Macro_Af1521_BAL_like 100.0 5.8E-43 1.3E-47 298.5 19.8 167 80-252 1-173 (175)
4 cd02908 Macro_Appr_pase_like M 100.0 1.1E-42 2.3E-47 294.4 19.6 160 82-251 1-164 (165)
5 cd02905 Macro_GDAP2_like Macro 100.0 9.7E-43 2.1E-47 287.8 16.7 137 82-228 2-140 (140)
6 PRK00431 RNase III inhibitor; 100.0 3.5E-42 7.6E-47 294.1 19.5 168 80-253 2-173 (177)
7 COG2110 Predicted phosphatase 100.0 4.5E-40 9.7E-45 280.9 17.8 169 81-253 3-174 (179)
8 cd02906 Macro_1 Macro domain, 100.0 4.3E-40 9.4E-45 274.0 14.6 139 82-225 1-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 1.8E-38 3.9E-43 261.1 16.5 135 81-227 1-137 (137)
10 cd03330 Macro_2 Macro domain, 100.0 3.1E-34 6.7E-39 234.2 16.4 132 82-224 1-132 (133)
11 cd02900 Macro_Appr_pase Macro 100.0 7.9E-32 1.7E-36 232.1 15.9 148 81-228 19-186 (186)
12 KOG2633 Hismacro and SEC14 dom 100.0 2.5E-31 5.3E-36 228.8 14.1 165 72-252 22-194 (200)
13 smart00506 A1pp Appr-1"-p proc 100.0 1.6E-29 3.5E-34 204.4 15.3 130 83-220 2-133 (133)
14 cd02749 Macro Macro domain, a 100.0 8.4E-29 1.8E-33 203.8 15.8 136 82-224 1-146 (147)
15 PF01661 Macro: Macro domain; 100.0 1.5E-28 3.3E-33 194.3 8.5 116 103-220 1-118 (118)
16 PRK13341 recombination factor 99.9 8.5E-29 1.8E-33 250.4 -2.4 171 80-255 474-706 (725)
17 cd02901 Macro_Poa1p_like Macro 99.9 4.5E-23 9.7E-28 169.3 13.7 134 82-226 1-139 (140)
18 PHA02595 tk.4 hypothetical pro 99.7 6.7E-17 1.5E-21 135.6 14.6 149 82-241 2-153 (154)
19 PF14519 Macro_2: Macro-like d 99.3 1.7E-11 3.6E-16 110.9 9.0 144 81-228 42-214 (280)
20 cd03331 Macro_Poa1p_like_SNF2 98.7 2.4E-07 5.2E-12 77.7 13.2 136 83-223 2-148 (152)
21 TIGR02452 conserved hypothetic 97.7 0.00017 3.8E-09 65.7 9.2 162 80-242 55-255 (266)
22 PF10154 DUF2362: Uncharacteri 95.9 0.087 1.9E-06 52.2 11.3 111 142-252 370-496 (510)
23 COG4295 Uncharacterized protei 95.6 0.1 2.2E-06 46.3 9.5 76 177-252 199-279 (285)
24 PHA00684 hypothetical protein 84.3 11 0.00024 30.7 8.8 100 101-223 2-101 (128)
25 PHA03033 hypothetical protein; 69.1 18 0.00038 29.6 6.0 79 82-172 2-81 (142)
26 PF01073 3Beta_HSD: 3-beta hyd 53.8 34 0.00073 31.1 5.9 44 159-202 67-114 (280)
27 PRK14837 undecaprenyl pyrophos 53.0 1.1E+02 0.0023 27.5 8.7 40 181-220 36-75 (230)
28 PRK14827 undecaprenyl pyrophos 50.4 1.2E+02 0.0027 28.2 9.0 40 181-220 97-136 (296)
29 PRK07475 hypothetical protein; 48.9 51 0.0011 29.4 6.2 105 143-253 26-142 (245)
30 KOG1502 Flavonol reductase/cin 48.6 36 0.00078 32.2 5.2 44 159-202 79-127 (327)
31 PLN02214 cinnamoyl-CoA reducta 48.2 31 0.00067 31.9 4.8 41 159-202 82-125 (342)
32 PRK14840 undecaprenyl pyrophos 48.1 1.1E+02 0.0024 27.8 8.1 39 182-220 53-91 (250)
33 PRK14842 undecaprenyl pyrophos 44.8 1.9E+02 0.004 26.2 9.0 46 181-227 38-83 (241)
34 KOG1602 Cis-prenyltransferase 44.1 1.6E+02 0.0035 27.0 8.5 41 181-221 66-106 (271)
35 cd00475 CIS_IPPS Cis (Z)-Isopr 43.0 2.1E+02 0.0045 25.4 9.0 39 182-220 31-69 (221)
36 PRK14839 undecaprenyl pyrophos 42.7 2.2E+02 0.0047 25.8 9.1 74 181-255 39-120 (239)
37 PF12965 DUF3854: Domain of un 42.1 63 0.0014 26.2 5.1 71 193-265 27-102 (130)
38 TIGR00055 uppS undecaprenyl di 41.9 2.3E+02 0.005 25.3 9.1 72 182-254 30-109 (226)
39 PRK14828 undecaprenyl pyrophos 41.3 2E+02 0.0044 26.1 8.8 40 181-220 57-96 (256)
40 PRK14829 undecaprenyl pyrophos 39.5 2.6E+02 0.0056 25.2 9.2 40 181-220 44-83 (243)
41 CHL00194 ycf39 Ycf39; Provisio 38.6 1.8E+02 0.0038 26.4 8.2 43 159-201 65-107 (317)
42 PRK14833 undecaprenyl pyrophos 37.2 2.7E+02 0.0059 24.9 8.9 39 182-220 35-73 (233)
43 PRK14831 undecaprenyl pyrophos 36.6 2.7E+02 0.0059 25.2 8.9 39 181-219 50-88 (249)
44 PRK14841 undecaprenyl pyrophos 36.3 3E+02 0.0064 24.7 9.0 40 181-220 33-72 (233)
45 PRK14832 undecaprenyl pyrophos 35.3 3.3E+02 0.0071 24.8 9.1 40 181-220 48-87 (253)
46 PLN02657 3,8-divinyl protochlo 34.8 2E+02 0.0042 27.3 8.1 45 158-202 136-180 (390)
47 PRK10240 undecaprenyl pyrophos 34.6 3.4E+02 0.0073 24.3 9.1 45 182-227 24-68 (229)
48 PF03967 PRCH: Photosynthetic 32.3 53 0.0012 27.1 3.2 50 35-89 29-78 (136)
49 PF01255 Prenyltransf: Putativ 31.7 2.2E+02 0.0048 25.0 7.4 39 182-220 25-63 (223)
50 PRK14830 undecaprenyl pyrophos 31.1 3.8E+02 0.0083 24.2 8.9 44 177-220 48-91 (251)
51 PRK15181 Vi polysaccharide bio 31.0 82 0.0018 29.1 4.7 45 159-203 91-140 (348)
52 PTZ00349 dehydrodolichyl dipho 30.8 3.6E+02 0.0079 25.5 8.8 40 181-220 49-88 (322)
53 PF13460 NAD_binding_10: NADH( 29.8 73 0.0016 25.9 3.8 36 158-201 60-95 (183)
54 PRK01060 endonuclease IV; Prov 27.9 2.9E+02 0.0062 24.4 7.6 60 179-239 86-145 (281)
55 PLN02662 cinnamyl-alcohol dehy 27.7 1.6E+02 0.0035 26.2 6.0 44 159-202 77-125 (322)
56 PRK14838 undecaprenyl pyrophos 27.7 4.6E+02 0.0099 23.6 8.9 71 181-252 40-116 (242)
57 PRK14834 undecaprenyl pyrophos 27.5 4.7E+02 0.01 23.7 9.3 38 182-219 45-82 (249)
58 PF01831 Peptidase_C16: Peptid 26.6 24 0.00053 30.9 0.3 33 58-90 216-248 (249)
59 PRK14835 undecaprenyl pyrophos 25.7 4.9E+02 0.011 23.9 8.7 39 182-220 72-110 (275)
60 COG0020 UppS Undecaprenyl pyro 25.5 5.1E+02 0.011 23.4 8.6 63 179-241 44-111 (245)
61 PRK14836 undecaprenyl pyrophos 24.6 5.3E+02 0.012 23.4 8.7 44 177-220 40-83 (253)
62 PTZ00372 endonuclease 4-like p 22.7 4.5E+02 0.0097 25.7 8.2 58 179-238 215-273 (413)
63 smart00518 AP2Ec AP endonuclea 22.5 4.8E+02 0.01 22.9 7.9 81 182-265 84-175 (273)
64 KOG4506 Uncharacterized conser 22.1 1.1E+02 0.0024 29.8 3.7 64 144-207 417-483 (598)
65 PTZ00325 malate dehydrogenase; 22.1 2.2E+02 0.0047 26.7 5.8 44 158-201 76-122 (321)
66 PRK06052 5-methyltetrahydropte 21.4 5.1E+02 0.011 24.8 8.0 64 177-240 141-207 (344)
67 COG2388 Predicted acetyltransf 21.4 1.2E+02 0.0026 23.5 3.3 41 160-203 40-80 (99)
68 PLN02986 cinnamyl-alcohol dehy 20.9 2.3E+02 0.005 25.4 5.7 44 159-202 78-126 (322)
69 PLN02725 GDP-4-keto-6-deoxyman 20.8 1.6E+02 0.0035 25.9 4.6 43 158-201 49-98 (306)
No 1
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-51 Score=367.38 Aligned_cols=217 Identities=31% Similarity=0.462 Sum_probs=195.2
Q ss_pred hHHHHHhhcCCCCCCccccCCCCCccceecchhhHHHHhhhcccccCCCCccccccccccccccCCCCCCcceecCCCce
Q 024577 3 TRRLIRFLLPATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAA 82 (265)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~ 82 (265)
+|+|+|-|| +++.|....+| ++..||+||+.+..++++ |+..+.. ++ .+.+
T Consensus 34 ~~~~~r~l~-n~r~p~~~~~~-----~l~~~~~~l~~~~~~~~~---------~~~~~~~-------------~~-~~~~ 84 (264)
T PRK04143 34 QQDLLRALA-NVRPALPLSDE-----YLNLQDAYLQDENAERGV---------VDLKDLQ-------------PI-KYDN 84 (264)
T ss_pred HHHHHHHHh-ccCCCCCCCHH-----HHHHHHHHHHHHHhhcCc---------ccHHhcC-------------cc-CCCE
Confidence 689999999 99999777666 899999999999999888 8777763 22 3689
Q ss_pred EEEEECccceeccCCCCcEEEEcCCCCCCCC-----CChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCC
Q 024577 83 LVINKGDITKWSVDGSSDAIVNPANERMLGG-----GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKL 157 (265)
Q Consensus 83 I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~-----~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L 157 (265)
|.||+||||++++ ||||||||+.|.++ +||+++|+++||++|+++|+++++. +++.+++|++++|++|+|
T Consensus 85 i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~-~g~~~~~G~a~iT~~~nL 159 (264)
T PRK04143 85 IFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTE-QGRKEATGQAKITRAYNL 159 (264)
T ss_pred EEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHH-cCCCCCCceEEEecCCCC
Confidence 9999999999987 99999999999865 8999999999999999999998753 355789999999999999
Q ss_pred CCceEEEEcCcccCCCC---ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcC---C
Q 024577 158 PASHVIHTVGPIYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAND---F 231 (265)
Q Consensus 158 ~~k~IIH~V~P~~~~~~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~---l 231 (265)
|||||||+|||.|+.+. ...+.|++||++||++|.+++++|||||+||||+||||+++||++|++++++|++. .
T Consensus 160 p~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~ 239 (264)
T PRK04143 160 PAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK 239 (264)
T ss_pred CCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999998732 45789999999999999999999999999999999999999999999999999963 3
Q ss_pred CeEEEEeeCcchHHHHHHHHHH
Q 024577 232 KEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 232 ~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
.+|+|++|+++.+.+|+..++.
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~ 261 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNK 261 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHH
Confidence 5899999999999999998764
No 2
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=4.6e-47 Score=326.38 Aligned_cols=166 Identities=25% Similarity=0.400 Sum_probs=153.2
Q ss_pred ecCCCceEEEEECcc--ceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcC
Q 024577 76 KLSESAALVINKGDI--TKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITP 153 (265)
Q Consensus 76 ~~~~~~~I~I~~GDI--t~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~ 153 (265)
....+.+|.||+||| |+++| |||||+||++|.+++||++||+++||++|++||+++.+ ..+++++|++++|+
T Consensus 13 ~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~--~~g~~~~G~~~iT~ 86 (186)
T cd02904 13 SLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRK--SNGPLEIAGAAVSQ 86 (186)
T ss_pred hhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHH--hcCCCCCCCEEEcc
Confidence 334478999999999 99877 99999999999999999999999999999999998763 24589999999999
Q ss_pred CCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc----
Q 024577 154 GFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---- 229 (265)
Q Consensus 154 a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~---- 229 (265)
+|+||||||||+|+|.|..+ .+++.|++||++||++|++++++|||||+||||++|||++++|++|+++|++|++
T Consensus 87 a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~ 165 (186)
T cd02904 87 AHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMS 165 (186)
T ss_pred CCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999664 4578999999999999999999999999999999999999999999999999985
Q ss_pred -CCCeEEEEeeCcchHHHHH
Q 024577 230 -DFKEVSLPMFLLHITALNH 248 (265)
Q Consensus 230 -~l~~V~~v~~~~~~~~~~~ 248 (265)
++++|+||+|+++.+.+|.
T Consensus 166 ~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 166 SSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred CCccEEEEEECCHHHHHHhh
Confidence 4789999999999999984
No 3
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=5.8e-43 Score=298.49 Aligned_cols=167 Identities=37% Similarity=0.526 Sum_probs=156.0
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
+.+|+|++|||+++++ ||||||+|+.+.+++|++++|++++|++++++|+++++ ..+++++|++++|++|+|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~--~~g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVR--KNGPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHH--hcCCCCCCcEEEecCCCCCC
Confidence 4689999999999987 99999999999999999999999999999999998763 34589999999999999999
Q ss_pred ceEEEEcCcccCCCC--ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc----CCCe
Q 024577 160 SHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN----DFKE 233 (265)
Q Consensus 160 k~IIH~V~P~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~----~l~~ 233 (265)
|||||+|+|.|+.+. +..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+. .+++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~ 154 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKE 154 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 999999999999864 4578999999999999999999999999999999999999999999999999986 4789
Q ss_pred EEEEeeCcchHHHHHHHHH
Q 024577 234 VSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 234 V~~v~~~~~~~~~~~~~f~ 252 (265)
|+||+|+++.+.+|+..++
T Consensus 155 I~~v~~~~~~~~~~~~al~ 173 (175)
T cd02907 155 IYLVDYDEQTVEAFEKALE 173 (175)
T ss_pred EEEEECCHHHHHHHHHHHh
Confidence 9999999999999998765
No 4
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=1.1e-42 Score=294.36 Aligned_cols=160 Identities=52% Similarity=0.829 Sum_probs=151.3
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCce
Q 024577 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (265)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k~ 161 (265)
+|+|++|||+++++ |||||++|+++.+++|++++|++++|++|++||+++. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 48899999999987 9999999999999999999999999999999999876 5799999999999999999
Q ss_pred EEEEcCcccCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeEEEE
Q 024577 162 VIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---DFKEVSLP 237 (265)
Q Consensus 162 IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~---~l~~V~~v 237 (265)
|||+|+|.|+.+. ++.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++ ++++|+||
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v 150 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFV 150 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999998753 5678999999999999999999999999999999999999999999999999996 57899999
Q ss_pred eeCcchHHHHHHHH
Q 024577 238 MFLLHITALNHCMF 251 (265)
Q Consensus 238 ~~~~~~~~~~~~~f 251 (265)
+++++.+.+|+..+
T Consensus 151 ~~~~~~~~~f~~~l 164 (165)
T cd02908 151 CFSEEDYEIYEKAL 164 (165)
T ss_pred eCCHHHHHHHHHHh
Confidence 99999999998864
No 5
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=9.7e-43 Score=287.75 Aligned_cols=137 Identities=42% Similarity=0.637 Sum_probs=130.2
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCce
Q 024577 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (265)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k~ 161 (265)
+|.|++||||+++| |||||++|++|.+++|++++|++++|++|++||++.. ++++|++++|++|+|||||
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 68899999999987 9999999999999999999999999999999999864 6999999999999999999
Q ss_pred EEEEcCcccCCCCC--hHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 024577 162 VIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (265)
Q Consensus 162 IIH~V~P~~~~~~~--~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl 228 (265)
|||+|+|.|+.+.. ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999998653 46899999999999999999999999999999999999999999999999995
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=3.5e-42 Score=294.06 Aligned_cols=168 Identities=47% Similarity=0.735 Sum_probs=157.1
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
+.+|+|++|||+++++ ||||||+|+.+.+++|++++|++++|++++++|+++++ .++++++|++++|++++|+|
T Consensus 2 ~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~--~~~~l~~G~~~~T~~~~l~~ 75 (177)
T PRK00431 2 GMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQ--QQGPCPTGEAVITSAGRLPA 75 (177)
T ss_pred CcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCeEEEecCCCCCC
Confidence 5689999999999876 99999999999999999999999999999999999863 23689999999999999999
Q ss_pred ceEEEEcCcccCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeEE
Q 024577 160 SHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---DFKEVS 235 (265)
Q Consensus 160 k~IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~---~l~~V~ 235 (265)
+||||+|+|.|+.+. ...+.|++||++||+.|++++++|||||+||||++|+|++++|++|++++++|++ ++++|+
T Consensus 76 ~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~ 155 (177)
T PRK00431 76 KYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVY 155 (177)
T ss_pred CEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEE
Confidence 999999999998765 3578999999999999999999999999999999999999999999999999975 578999
Q ss_pred EEeeCcchHHHHHHHHHH
Q 024577 236 LPMFLLHITALNHCMFSF 253 (265)
Q Consensus 236 ~v~~~~~~~~~~~~~f~~ 253 (265)
||+++++.+++|+..|+.
T Consensus 156 ~v~~~~~~~~~f~~~l~~ 173 (177)
T PRK00431 156 FVCYDEEAYRLYERLLTQ 173 (177)
T ss_pred EEECCHHHHHHHHHHHHH
Confidence 999999999999999984
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=4.5e-40 Score=280.87 Aligned_cols=169 Identities=44% Similarity=0.711 Sum_probs=157.9
Q ss_pred ceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCc
Q 024577 81 AALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (265)
Q Consensus 81 ~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k 160 (265)
..|.+++||||++.+ |||||+||+++.++|||++||++++|++|+++|++....+++..+++|++++|++++|+++
T Consensus 3 ~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~ 78 (179)
T COG2110 3 TNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAK 78 (179)
T ss_pred ceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCC
Confidence 478999999999987 9999999999999999999999999999999999987555566788999999999999999
Q ss_pred eEEEEcCcccCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEE
Q 024577 161 HVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN--DFKEVSLP 237 (265)
Q Consensus 161 ~IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~--~l~~V~~v 237 (265)
||||+++|.|..+. ...+.|..||+++|++|+++|++|||||+||||++|||++++++++++++++|+. ++..|.|+
T Consensus 79 ~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v 158 (179)
T COG2110 79 YVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFV 158 (179)
T ss_pred EEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEE
Confidence 99999999998865 4568999999999999999999999999999999999999999999999999995 67899999
Q ss_pred eeCcchHHHHHHHHHH
Q 024577 238 MFLLHITALNHCMFSF 253 (265)
Q Consensus 238 ~~~~~~~~~~~~~f~~ 253 (265)
+|+++.+..|...+..
T Consensus 159 ~~~~e~~~~~~~~~~~ 174 (179)
T COG2110 159 VYGEETARVYEELLST 174 (179)
T ss_pred ecCchhHHHHHHHHhh
Confidence 9999999999987764
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=4.3e-40 Score=274.00 Aligned_cols=139 Identities=45% Similarity=0.718 Sum_probs=127.8
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCC-----CCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCC
Q 024577 82 ALVINKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (265)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~-----~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~ 156 (265)
+|.||+|||+++++ |||||+||+.|.+ ++||+++|++++|++|++||+++++ +.++.+++|++++|++++
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~-~~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMT-KQGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHH-hcCCCCCCCeEEEEeCCC
Confidence 47899999999987 9999999999964 4899999999999999999999874 344578999999999999
Q ss_pred CCCceEEEEcCcccCCCC---ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHH
Q 024577 157 LPASHVIHTVGPIYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVK 225 (265)
Q Consensus 157 L~~k~IIH~V~P~~~~~~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~ 225 (265)
|+|+||||+|+|.|+.+. +....|++||++||+.|.+++++|||||+||||++|||++++|++++++++
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 999999999999998754 357899999999999999999999999999999999999999999999975
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=1.8e-38 Score=261.10 Aligned_cols=135 Identities=33% Similarity=0.462 Sum_probs=126.3
Q ss_pred ceEEEEECccceeccCCCCcEEEEcCCCC-CCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccC-CCcEEEcCCCCCC
Q 024577 81 AALVINKGDITKWSVDGSSDAIVNPANER-MLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCP-IGEARITPGFKLP 158 (265)
Q Consensus 81 ~~I~I~~GDIt~~~vd~~~DaIVNaaN~~-l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~-~G~vviT~a~~L~ 158 (265)
.+|+|++|||+++++ |||||++|+. +.+++|++++|++++|++++++|+++. .++ +|++++|++|+|+
T Consensus 1 ~~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~------~~~~~G~~~vT~~~~L~ 70 (137)
T cd02903 1 LTLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAK------LGQTVGSVIVTKGGNLP 70 (137)
T ss_pred CEEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHc------CCCCCCeEEEecCCCCC
Confidence 368999999999977 9999999999 789999999999999999999999876 233 6999999999999
Q ss_pred CceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 024577 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEF 227 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~f 227 (265)
||||||+++|.|..+ +...|++||++||+.|++++++|||||+||||++|||++++|++|++++++|
T Consensus 71 ~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 71 CKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999865 5679999999999999999999999999999999999999999999999986
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=100.00 E-value=3.1e-34 Score=234.17 Aligned_cols=132 Identities=39% Similarity=0.558 Sum_probs=122.9
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCce
Q 024577 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (265)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k~ 161 (265)
.|++++|||+++++ |||||++|+.+.+++|++++|++++|++++++|.+.. ++++|++++|++++|+|||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCE
Confidence 37899999999977 9999999999999999999999999999999998753 7889999999999999999
Q ss_pred EEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHH
Q 024577 162 VIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 224 (265)
Q Consensus 162 IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai 224 (265)
|||+++|.+.. ..+.+.|++||++||+.|.+++++|||||+||||.+|||+++++++|.++|
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999997654 346679999999999999999999999999999999999999999999886
No 11
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.98 E-value=7.9e-32 Score=232.10 Aligned_cols=148 Identities=22% Similarity=0.199 Sum_probs=126.1
Q ss_pred ceEEEEECccceecc------CCCCcEEEEcCCCCCCCCCChhHHHHHHhC-hHHHHHHhhCCccCCCcccCCCcEEEcC
Q 024577 81 AALVINKGDITKWSV------DGSSDAIVNPANERMLGGGGADGAIHRAAG-PELREACCKVPEVRPEVRCPIGEARITP 153 (265)
Q Consensus 81 ~~I~I~~GDIt~~~v------d~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG-~~l~~ec~~~~~~~~~~~l~~G~vviT~ 153 (265)
..+.+++|++++++. .+++||||||||+.+.++||+++||++++| ++|+++|++.+..+..+.+|+|++++|+
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~ 98 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVP 98 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEec
Confidence 356677777776651 124699999999999999999999999999 6899999776533335689999999999
Q ss_pred CCCCC----------CceEEEEcCcccC-CCCChHHHHHHHHHHHHHHHHHc--CceeeeecccccCCCCCCHHHHHHHH
Q 024577 154 GFKLP----------ASHVIHTVGPIYD-ADSNPEASLRNAYKNSLSVAKEN--NIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 154 a~~L~----------~k~IIH~V~P~~~-~~~~~~~~L~~~y~~~L~~A~~~--~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
+++|+ ++||||++++.+. ....+.+.|+.||+++|++|.++ +++|||||+||||.+|+|++++|++|
T Consensus 99 ~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m 178 (186)
T cd02900 99 LGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQM 178 (186)
T ss_pred CCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHH
Confidence 99999 9999999886554 22245678999999999999887 89999999999999999999999999
Q ss_pred HHHHHHHh
Q 024577 221 LSTVKEFA 228 (265)
Q Consensus 221 l~ai~~fl 228 (265)
+.++++|.
T Consensus 179 ~~ai~~f~ 186 (186)
T cd02900 179 AFAIRLFN 186 (186)
T ss_pred HHHHHHhC
Confidence 99999883
No 12
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.5e-31 Score=228.81 Aligned_cols=165 Identities=38% Similarity=0.592 Sum_probs=148.1
Q ss_pred CcceecCC--CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcE
Q 024577 72 DGHFKLSE--SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEA 149 (265)
Q Consensus 72 ~~~f~~~~--~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~v 149 (265)
-+.|++.+ |.++.+|+||++.+++ |||| +.+++|++.+|++++|+++.+||..+- .|++|.+
T Consensus 22 l~~f~~~~~~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~a 85 (200)
T KOG2633|consen 22 LEVFKIDKPDNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAA 85 (200)
T ss_pred cchhhccCccccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCee
Confidence 45677766 7899999999999988 9998 889999999999999999999999874 5999999
Q ss_pred EEcCCCCCCCceEEEEcCcccCCCCCh-HHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 024577 150 RITPGFKLPASHVIHTVGPIYDADSNP-EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (265)
Q Consensus 150 viT~a~~L~~k~IIH~V~P~~~~~~~~-~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl 228 (265)
++|++++||+|+|||+|+|.|...... ...|+.||++||.+|.+++++|||||+|++|.+|||++.+|++.+++++.|+
T Consensus 86 k~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f 165 (200)
T KOG2633|consen 86 KSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFF 165 (200)
T ss_pred EecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886632 2369999999999999999999999999999999999999999999999998
Q ss_pred c-----CCCeEEEEeeCcchHHHHHHHHH
Q 024577 229 N-----DFKEVSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 229 ~-----~l~~V~~v~~~~~~~~~~~~~f~ 252 (265)
. .++.+.|+.++++.+..|.....
T Consensus 166 ~~~~d~~l~~~~f~~~d~e~~~~~l~~~~ 194 (200)
T KOG2633|consen 166 VKNKDSSLKTVPFLDYDSESYGAYLPEYA 194 (200)
T ss_pred hhCCCceEEEEEEeccCCchHHHHHhhhc
Confidence 5 35678999999999998766543
No 13
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.97 E-value=1.6e-29 Score=204.40 Aligned_cols=130 Identities=45% Similarity=0.636 Sum_probs=118.5
Q ss_pred EEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHH-HHHHhhCCccCCCcccCCCcEEEcCCCCCCCce
Q 024577 83 LVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPEL-REACCKVPEVRPEVRCPIGEARITPGFKLPASH 161 (265)
Q Consensus 83 I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l-~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k~ 161 (265)
+++++|||+++++ |+|||++|+.+.+++|++++|++++|+++ ++++++.. ++.+++|++++|++++++++|
T Consensus 2 i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~ 73 (133)
T smart00506 2 LKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAKY 73 (133)
T ss_pred eEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCCE
Confidence 6899999999876 99999999999999999999999999996 56665543 237999999999999999999
Q ss_pred EEEEcCcccCCC-CChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 162 VIHTVGPIYDAD-SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 162 IIH~V~P~~~~~-~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
|||+++|.|... ....+.|++||++||+.|.+++++|||||+||||.+|+|++++++++
T Consensus 74 Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 74 VIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 999999999886 36778999999999999999999999999999999999999999874
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.96 E-value=8.4e-29 Score=203.84 Aligned_cols=136 Identities=41% Similarity=0.623 Sum_probs=124.9
Q ss_pred eEEEEECccce-eccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCC-C
Q 024577 82 ALVINKGDITK-WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLP-A 159 (265)
Q Consensus 82 ~I~I~~GDIt~-~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~-~ 159 (265)
.|++++|||++ .++ |+|||++|+.+.+++|++.+|++++|++++++|++..+. ..+++|++.+|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~~----d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~---~~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLGS----DAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKE---LELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCCC----CEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcc---cCCCCCCEEECcCCCCCcC
Confidence 37899999999 765 999999999999999999999999999999999987631 23799999999999999 9
Q ss_pred ceEEEEcCcccCCCC--ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCC------CHHHHHHHHHHHH
Q 024577 160 SHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGY------PYEEAAAVALSTV 224 (265)
Q Consensus 160 k~IIH~V~P~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~------P~~~aa~i~l~ai 224 (265)
+||||+++|.|.... .+.+.|++||++||..|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 999999999998864 3568999999999999999999999999999999999 9999999999875
No 15
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.95 E-value=1.5e-28 Score=194.32 Aligned_cols=116 Identities=43% Similarity=0.738 Sum_probs=107.2
Q ss_pred EEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCceEEEEcCcccCCCC--ChHHHH
Q 024577 103 VNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADS--NPEASL 180 (265)
Q Consensus 103 VNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k~IIH~V~P~~~~~~--~~~~~L 180 (265)
||++|+.+.+++||+++|++++|++++++|+++.+ .++++++|++++|++++|+++||||+|+|.|+... .+.+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~--~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKK--KGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHH--HHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhc--ccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 89999999999999999999999999999988752 13468999999999999999999999999997433 678999
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
++||++||+.|.+++++||+||+||||++|+|+++++++|
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999986
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.94 E-value=8.5e-29 Score=250.42 Aligned_cols=171 Identities=22% Similarity=0.218 Sum_probs=152.2
Q ss_pred CceEEEEE----CccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHH---HHHHhhCCcc--------------
Q 024577 80 SAALVINK----GDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPEL---REACCKVPEV-------------- 138 (265)
Q Consensus 80 ~~~I~I~~----GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l---~~ec~~~~~~-------------- 138 (265)
+.++.+++ ||||...+ |+|||+||+.+.+++|++++|++++|+++ +++|+++...
T Consensus 474 ~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~ 549 (725)
T PRK13341 474 GERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLD 549 (725)
T ss_pred ccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccc
Confidence 57888999 99999877 99999999999999999999999999999 8888764211
Q ss_pred ------CC----------CcccCCCcEEEc------------CCCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHH
Q 024577 139 ------RP----------EVRCPIGEARIT------------PGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSV 190 (265)
Q Consensus 139 ------~~----------~~~l~~G~vviT------------~a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~ 190 (265)
+. .++|++|++++| ++|+|+|+||||+|||.|..+.. .+.|..||+++|.+
T Consensus 550 ~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~ 628 (725)
T PRK13341 550 GSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLE 628 (725)
T ss_pred cchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHH
Confidence 00 358999999999 99999999999999999987654 56899999999999
Q ss_pred HHHcCce----------eeeecccccCCCCCCHHHHHHHHHHHHHHHhcC---CCeEEEEeeCcchHHHHHHHHHHHH
Q 024577 191 AKENNIQ----------YIAFTAISCGVYGYPYEEAAAVALSTVKEFAND---FKEVSLPMFLLHITALNHCMFSFAS 255 (265)
Q Consensus 191 A~~~~i~----------SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~---l~~V~~v~~~~~~~~~~~~~f~~~~ 255 (265)
|++++++ |||||+||||++|||.+++++++++++.+|+.+ ..++.++.|++..+..|++.|....
T Consensus 629 Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 706 (725)
T PRK13341 629 AEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPDYRQALATNLEEERICNLDEELTRIL 706 (725)
T ss_pred HHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999964 3467799999999999999887443
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.90 E-value=4.5e-23 Score=169.30 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=113.2
Q ss_pred eEEEEECcccee-ccCCCCcEEEEcCCCCCCCCCChhHHHHHHh--C-hHHHHHHhhCCccCCCcccCCCcEE-EcCCCC
Q 024577 82 ALVINKGDITKW-SVDGSSDAIVNPANERMLGGGGADGAIHRAA--G-PELREACCKVPEVRPEVRCPIGEAR-ITPGFK 156 (265)
Q Consensus 82 ~I~I~~GDIt~~-~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~a--G-~~l~~ec~~~~~~~~~~~l~~G~vv-iT~a~~ 156 (265)
.|.+++|||++. ++ |+|||++|+.+.+++|++.+|.++. + .++++.|++. .+..|++. ++.+++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~ 69 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSS 69 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCC
Confidence 378999999999 66 9999999999999999999999973 2 3556666653 23455555 466777
Q ss_pred CCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHH
Q 024577 157 LPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKE 226 (265)
Q Consensus 157 L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~ 226 (265)
++++||+|+++|.|.......+.|++|++++++.|++++++|||||.||||.+|+|++++++++.+.+.+
T Consensus 70 ~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 70 LVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred CCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 8899999999998766555678999999999999999999999999999999999999999998877653
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.73 E-value=6.7e-17 Score=135.59 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=118.0
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEE-cCCCCCCCc
Q 024577 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARI-TPGFKLPAS 160 (265)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vvi-T~a~~L~~k 160 (265)
.|.+++|||++...+ ..++|||++|..+.|++||+.+|.++.+ ++.++.++.- .++..+.|++.+ +.+++.+.+
T Consensus 2 ~i~~v~GDl~~~~~~-~~~~i~h~~N~~g~mG~GIA~~~k~~~P-~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~ 76 (154)
T PHA02595 2 IVDYIKGDIVALFLQ-GKGNIAHGCNCFHTMGSGIAGQLAKAFP-QILEADKLTT---EGDVEKLGTFSVWEKYVGGHKA 76 (154)
T ss_pred eEEEECCcccccccC-CCceEEEeeCCCCcCChHHHHHHHHHcC-hHHHHHHHHh---cCCccccceEEEEEeeccCCCE
Confidence 378899999877421 2369999999999999999999999985 6666655442 133577899966 556677789
Q ss_pred eEEEEcCcccCCCCC-hHHHHHHHHHHHHHHHHHcCc-eeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 024577 161 HVIHTVGPIYDADSN-PEASLRNAYKNSLSVAKENNI-QYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPM 238 (265)
Q Consensus 161 ~IIH~V~P~~~~~~~-~~~~L~~~y~~~L~~A~~~~i-~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~ 238 (265)
||+|..+- |+.+.. +.+.|++|+++..+.+.++++ .|||||.||||.+|+|++.+.+++.+. ++.+ +|.++.
T Consensus 77 ~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~----~~~~-~i~Vy~ 150 (154)
T PHA02595 77 YCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA----TPDI-DIVVVE 150 (154)
T ss_pred EEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh----cCCC-cEEEEE
Confidence 99999876 766543 456799999999999999998 999999999999999999999987664 3333 577777
Q ss_pred eCc
Q 024577 239 FLL 241 (265)
Q Consensus 239 ~~~ 241 (265)
|++
T Consensus 151 ~~~ 153 (154)
T PHA02595 151 YEK 153 (154)
T ss_pred ecC
Confidence 764
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=99.27 E-value=1.7e-11 Score=110.95 Aligned_cols=144 Identities=23% Similarity=0.246 Sum_probs=89.8
Q ss_pred ceEEEEECccceecc---------CCCCcEEEEcCCCCCCCCCChhHHHHHHhChH-HHHHHhhCCccCCCcccCCCcEE
Q 024577 81 AALVINKGDITKWSV---------DGSSDAIVNPANERMLGGGGADGAIHRAAGPE-LREACCKVPEVRPEVRCPIGEAR 150 (265)
Q Consensus 81 ~~I~I~~GDIt~~~v---------d~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~-l~~ec~~~~~~~~~~~l~~G~vv 150 (265)
..+.++.|++..+.- ..+.|+||.||||...++||.+.+|.++.|.+ ++..+++.. .++..++|++-
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~t 118 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCT 118 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--E
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeE
Confidence 458889998875531 12579999999999999999999999999865 444455443 12346889888
Q ss_pred EcCCC----------CCCCceEEEEcCc------ccCCCC---ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCC
Q 024577 151 ITPGF----------KLPASHVIHTVGP------IYDADS---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGY 211 (265)
Q Consensus 151 iT~a~----------~L~~k~IIH~V~P------~~~~~~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~ 211 (265)
+.+-. +-.++||+|+.+. .|.... ...+.+-+++++.+..+. ..+.+|.+|.||||.+|+
T Consensus 119 vIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 119 VIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT--
T ss_pred EEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCC
Confidence 76542 2357899999752 233221 123567778888887664 569999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 024577 212 PYEEAAAVALSTVKEFA 228 (265)
Q Consensus 212 P~~~aa~i~l~ai~~fl 228 (265)
|++.+|+.|+-|++-|.
T Consensus 198 ~p~~sAk~M~fAl~l~~ 214 (280)
T PF14519_consen 198 PPEISAKQMAFALRLYN 214 (280)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999886
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.75 E-value=2.4e-07 Score=77.72 Aligned_cols=136 Identities=17% Similarity=0.139 Sum_probs=97.5
Q ss_pred EEEEECccceeccC-CCCcEEEEcCCCCCCCC-CChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCC----
Q 024577 83 LVINKGDITKWSVD-GSSDAIVNPANERMLGG-GGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK---- 156 (265)
Q Consensus 83 I~I~~GDIt~~~vd-~~~DaIVNaaN~~l~~~-~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~---- 156 (265)
|+.++||+|....+ .+..+|++.+|.....+ +|++.+|.+.. |+..++-++.-+ .+.+..|++.+.+...
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~---~~dl~LG~~~li~v~~~~~~ 77 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGK---MKDLHLGDLHLFPIDDKNSR 77 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHh---cCCCccccEEEEEeccccCC
Confidence 78899999987541 12459999999999888 68999999887 444333222110 1246689998876422
Q ss_pred C-CCceEEEEcCcccCCCC----ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHH
Q 024577 157 L-PASHVIHTVGPIYDADS----NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALST 223 (265)
Q Consensus 157 L-~~k~IIH~V~P~~~~~~----~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~a 223 (265)
. +..||...++....... -....|++|+..+-..|.+ +-.||.||-||+|.+|.|++..-+++-+.
T Consensus 78 ~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~ 148 (152)
T cd03331 78 LKGPDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKY 148 (152)
T ss_pred CCCCeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 1 13588888888654432 2457788888888877765 45789999999999999999887775443
No 21
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.74 E-value=0.00017 Score=65.67 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=102.7
Q ss_pred CceEEEEECccceecc-----C-CCCcEEEEcCCCCCCCCCChh------HHHHHHhCh--HHH--HHHhhCCccCCCcc
Q 024577 80 SAALVINKGDITKWSV-----D-GSSDAIVNPANERMLGGGGAD------GAIHRAAGP--ELR--EACCKVPEVRPEVR 143 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~v-----d-~~~DaIVNaaN~~l~~~~Gvs------~aI~~~aG~--~l~--~ec~~~~~~~~~~~ 143 (265)
..+|.|+.+|-.+.-. . ..--++.|.||....+||=+. .+|.+..+. -|. .+....- ...+.+
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~-r~~~~p 133 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFH-RHQRSP 133 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhh-cccCCC
Confidence 4679999998532211 0 123589999988776543111 233333331 121 1111110 011223
Q ss_pred cCCCcEEEcC--------CCCC-CCc---eEEEEcCcccCCC-----C---ChHHHHHHHHHHHHHHHHHcCceeeeecc
Q 024577 144 CPIGEARITP--------GFKL-PAS---HVIHTVGPIYDAD-----S---NPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (265)
Q Consensus 144 l~~G~vviT~--------a~~L-~~k---~IIH~V~P~~~~~-----~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~ 203 (265)
+..-.++.+| .+.+ .-. -||-++.|++... . .....++.-++.+|..|..+|.+++.+-+
T Consensus 134 l~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA 213 (266)
T TIGR02452 134 LYSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGA 213 (266)
T ss_pred CCCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 4433333333 2233 222 2566667776521 1 12467889999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHH---HHhcCCCeEEEEeeCcc
Q 024577 204 ISCGVYGYPYEEAAAVALSTVK---EFANDFKEVSLPMFLLH 242 (265)
Q Consensus 204 IgtG~~g~P~~~aa~i~l~ai~---~fl~~l~~V~~v~~~~~ 242 (265)
+|||.|+-|+.++|++..+.+. +|...+++|+|-+++..
T Consensus 214 ~GCG~f~N~p~~VA~~f~evL~~~~ef~g~F~~VvFAI~d~~ 255 (266)
T TIGR02452 214 WGCGVFGNDPAEVAKIFHDLLSPGGIFKGRIKEVVFAILDRH 255 (266)
T ss_pred ccccccCCCHHHHHHHHHHHhccCccccCceeEEEEEEeCCC
Confidence 9999999999999999999887 67778999999999854
No 22
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.91 E-value=0.087 Score=52.21 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=78.5
Q ss_pred cccCCCcEEEcCCCCCCC-ceEEEEcCcc-cCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCH-----
Q 024577 142 VRCPIGEARITPGFKLPA-SHVIHTVGPI-YDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPY----- 213 (265)
Q Consensus 142 ~~l~~G~vviT~a~~L~~-k~IIH~V~P~-~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~----- 213 (265)
..+.+|++.+|.--||.. -.|+|.|.-. .+.+. ++...+-..+||+|+.|..+++.+|.+|++-+....-..
T Consensus 370 ~~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc 449 (510)
T PF10154_consen 370 STLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWC 449 (510)
T ss_pred CcCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHH
Confidence 356899999999999974 6688998542 22222 455678889999999999999999999999887543221
Q ss_pred HHHHHHHHHHHHHHhc--------CCCeEEEEeeCcchHHHHHHHHH
Q 024577 214 EEAAAVALSTVKEFAN--------DFKEVSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 214 ~~aa~i~l~ai~~fl~--------~l~~V~~v~~~~~~~~~~~~~f~ 252 (265)
-.=|+.+++.++-|+- ..+.|.|++-..-.-.+|.....
T Consensus 450 ~~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~ 496 (510)
T PF10154_consen 450 LKRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSN 496 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHh
Confidence 1235666777777762 24789999876654555544443
No 23
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.1 Score=46.28 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHH---HhcCCCeEEEEeeCcchH--HHHHHHH
Q 024577 177 EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKE---FANDFKEVSLPMFLLHIT--ALNHCMF 251 (265)
Q Consensus 177 ~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~---fl~~l~~V~~v~~~~~~~--~~~~~~f 251 (265)
.+.|..-.+.+|.+|..++.+.+.+-+.|||+|+-++..+|+++.+.+.+ ++..+++|.|-+++...- .+|+...
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 36788889999999999999999999999999999999999999988764 456789999999985443 3555544
Q ss_pred H
Q 024577 252 S 252 (265)
Q Consensus 252 ~ 252 (265)
+
T Consensus 279 e 279 (285)
T COG4295 279 E 279 (285)
T ss_pred H
Confidence 4
No 24
>PHA00684 hypothetical protein
Probab=84.30 E-value=11 Score=30.70 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCceEEEEcCcccCCCCChHHHH
Q 024577 101 AIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASL 180 (265)
Q Consensus 101 aIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k~IIH~V~P~~~~~~~~~~~L 180 (265)
+-|-.+|....+++|.+..-++..|.. +. .+.=..|. ++-+|.+. .++-..-+.+.+
T Consensus 2 IFVFGSNlaG~Hg~GAA~~A~~~~GA~-------~G----~g~G~~G~-----SYAIPT~~-------~~~l~~~~l~~I 58 (128)
T PHA00684 2 IFVFGSNLAGAHGAGAAAAAHKEHGAA-------WG----VGEGRTGH-----SYAIPTKA-------GTVISTLSLPDI 58 (128)
T ss_pred eEEecCCccccccchHHHHHHHHhChh-------hc----cccCCCCc-----eeeccccc-------CCccccccHHHH
Confidence 467788888889998877666555432 11 00111122 22232221 111111346789
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALST 223 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~a 223 (265)
+..+..-+..|.++--.+.-+..||||+.||..++.|....++
T Consensus 59 ~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a 101 (128)
T PHA00684 59 GAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDA 101 (128)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcC
Confidence 9999999999999998999999999999999999999886544
No 25
>PHA03033 hypothetical protein; Provisional
Probab=69.09 E-value=18 Score=29.61 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=50.8
Q ss_pred eEEEEECccceeccCCCCcEEEEcCCCCCCCCCChh-HHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCc
Q 024577 82 ALVINKGDITKWSVDGSSDAIVNPANERMLGGGGAD-GAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (265)
Q Consensus 82 ~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs-~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k 160 (265)
++.-+.|+|.++-.+.+...++......+.||.|++ -.+.+..|. -++.++. ...+|++.+-.-. -+
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Q-------kk~~GeVAvLk~d---~R 69 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQ-------KKKKGEVAYIYKN---NK 69 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhh-------ccCCCeEEEEecC---CE
Confidence 456678844443222355778878888889999999 777776776 2224332 2446776664433 37
Q ss_pred eEEEEcCcccCC
Q 024577 161 HVIHTVGPIYDA 172 (265)
Q Consensus 161 ~IIH~V~P~~~~ 172 (265)
||+..+.-.|-.
T Consensus 70 yIYYLITKdyie 81 (142)
T PHA03033 70 YIIYIIIADYIE 81 (142)
T ss_pred EEEEEEeHHHHH
Confidence 999999876644
No 26
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=53.78 E-value=34 Score=31.07 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=29.5
Q ss_pred CceEEEEcCcccCCCCChHH-H---HHHHHHHHHHHHHHcCceeeeec
Q 024577 159 ASHVIHTVGPIYDADSNPEA-S---LRNAYKNSLSVAKENNIQYIAFT 202 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~-~---L~~~y~~~L~~A~~~~i~SIAfP 202 (265)
|+.|||+++|.-..+....+ . =-...+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 67999999874333221122 2 22678899999999998877653
No 27
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=52.97 E-value=1.1e+02 Score=27.53 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...++++++.|.+.|++.+.+=++|+-++.=|++++...|
T Consensus 36 ~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm 75 (230)
T PRK14837 36 LKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM 75 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 3567788888889999999999999999999999988654
No 28
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=50.44 E-value=1.2e+02 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...++++++.|.+.|++.|.+=++|+.++.=|.+++...|
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm 136 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 136 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHH
Confidence 3567788888899999999999999999999998876443
No 29
>PRK07475 hypothetical protein; Provisional
Probab=48.92 E-value=51 Score=29.44 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=60.4
Q ss_pred ccCCCcEEEcCCCCCCCceEEEEc---CcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeeccccc---------CCCC
Q 024577 143 RCPIGEARITPGFKLPASHVIHTV---GPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISC---------GVYG 210 (265)
Q Consensus 143 ~l~~G~vviT~a~~L~~k~IIH~V---~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~Igt---------G~~g 210 (265)
+..+|++.--..+..| -.++.| .|.---. .....+...+..+.+..+..|++.|++|| ++ ...+
T Consensus 26 p~~pgd~~~~~t~~~p--v~~~~v~g~~~~~~~~-~~~~~~~~~l~~aa~~L~~~G~d~I~~~C-gt~~~~~~~l~~~~~ 101 (245)
T PRK07475 26 PRIPGDVGNAATWPFP--VRYKVVRGATPERVVE-GDDPSLLDAFVAAARELEAEGVRAITTSC-GFLALFQRELAAALG 101 (245)
T ss_pred CCCCCCCCCcccCCcC--EEEEeeCCCCHHHHhc-CCCccHHHHHHHHHHHHHHcCCCEEEech-HHHHHHHHHHHHHcC
Confidence 4456777654555444 344444 2211000 11123556666777777788999999998 32 2345
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEeeCcchHHHHHHHHHH
Q 024577 211 YPYEEAAAVALSTVKEFANDFKEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 211 ~P~~~aa~i~l~ai~~fl~~l~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
.|.-.++...+.+++......++|-++...... +|...|+.
T Consensus 102 VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~--l~~~~l~~ 142 (245)
T PRK07475 102 VPVATSSLLQVPLIQALLPAGQKVGILTADASS--LTPAHLLA 142 (245)
T ss_pred CCEeccHHHHHHHHHHhccCCCeEEEEeCCchh--hhHHHHHh
Confidence 666666666666666654445677777766653 66666553
No 30
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=48.58 E-value=36 Score=32.15 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=30.3
Q ss_pred CceEEEEcCcccCCCCC-hHHHHH---HHHHHHHHHHHHcC-ceeeeec
Q 024577 159 ASHVIHTVGPIYDADSN-PEASLR---NAYKNSLSVAKENN-IQYIAFT 202 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~-~~~~L~---~~y~~~L~~A~~~~-i~SIAfP 202 (265)
|+.|+|++.|.-..... +.+.+. +...|+|+.|.+-+ ++.|.+.
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 89999999996554332 223443 55678888888766 7777764
No 31
>PLN02214 cinnamoyl-CoA reductase
Probab=48.24 E-value=31 Score=31.91 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=27.9
Q ss_pred CceEEEEcCcccCCCCChHHHH---HHHHHHHHHHHHHcCceeeeec
Q 024577 159 ASHVIHTVGPIYDADSNPEASL---RNAYKNSLSVAKENNIQYIAFT 202 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L---~~~y~~~L~~A~~~~i~SIAfP 202 (265)
+++|||+++|.... ....+ -....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999986432 22222 2456788888888888776653
No 32
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=48.09 E-value=1.1e+02 Score=27.82 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
..++++++.|.+.|++.|.+=++|+-++.=|++++...|
T Consensus 53 ~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm 91 (250)
T PRK14840 53 KSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF 91 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 456777888889999999999999999999999987665
No 33
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.75 E-value=1.9e+02 Score=26.16 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEF 227 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~f 227 (265)
...++++++.|.+.|++.|.+=++|+-++.=|++++...| .-+.++
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm-~L~~~~ 83 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIF-GLLVEF 83 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHH
Confidence 3567778888889999999999999999999998887554 333343
No 34
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=44.13 E-value=1.6e+02 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVAL 221 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l 221 (265)
-.++..+|+.|.+.|++.|.+=++|+-+|+=|++++--.|=
T Consensus 66 f~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~ 106 (271)
T KOG1602|consen 66 FEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMD 106 (271)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHH
Confidence 34677889999999999999999999999999988866554
No 35
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=42.98 E-value=2.1e+02 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
..+++++..|.+.|++.+.+=++|+.++.=|+++....|
T Consensus 31 ~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm 69 (221)
T cd00475 31 EKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLM 69 (221)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHH
Confidence 456778888889999999999999999999999887554
No 36
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.70 E-value=2.2e+02 Score=25.76 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc--------CCCeEEEEeeCcchHHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN--------DFKEVSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~--------~l~~V~~v~~~~~~~~~~~~~f~ 252 (265)
...++++++.|.+.|++.|.+=++|+-++.=|++++...| +-+.+++. .-.+|+++---+..-.-.+...+
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm-~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~ 117 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLM-RLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIA 117 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHH
Confidence 3566778888889999999999999999999999887554 33333322 22345565544444444444444
Q ss_pred HHH
Q 024577 253 FAS 255 (265)
Q Consensus 253 ~~~ 255 (265)
.+.
T Consensus 118 ~~e 120 (239)
T PRK14839 118 RAE 120 (239)
T ss_pred HHH
Confidence 333
No 37
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=42.06 E-value=63 Score=26.20 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=41.5
Q ss_pred HcCceeeeecccccCCCCCCHHH----HHHHHHHHHHHHhcCCCeEEEEeeCcch-HHHHHHHHHHHHHhhhhhhccC
Q 024577 193 ENNIQYIAFTAISCGVYGYPYEE----AAAVALSTVKEFANDFKEVSLPMFLLHI-TALNHCMFSFASRFLKLIIDCG 265 (265)
Q Consensus 193 ~~~i~SIAfP~IgtG~~g~P~~~----aa~i~l~ai~~fl~~l~~V~~v~~~~~~-~~~~~~~f~~~~~~~~~~~~~~ 265 (265)
..|+-.||+|-+..|..- +.+. ....++..+..+...-++|+| +||.+. ...........+|+.++|.+-|
T Consensus 27 s~G~~aIalpGV~~~~~~-~~~~~~~~~~~~L~p~L~~~~~~gr~v~i-aFD~D~~~~Tn~~V~~a~~~l~~~L~~~G 102 (130)
T PF12965_consen 27 SQGYPAIALPGVNNGYRW-PKDEGDKIGKRRLIPELAKLAKPGREVYI-AFDADTKPKTNKNVRRAIKRLGKLLKEAG 102 (130)
T ss_pred cCCceEEEeCceeccccc-cccccccccchhcchhHHHhccCCceEEE-EecCCCccchhHHHHHHHHHHHHHHHHCC
Confidence 479999999999887632 2222 223445555555544456655 566653 2344555556666666665543
No 38
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=41.93 E-value=2.3e+02 Score=25.31 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc--------CCCeEEEEeeCcchHHHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN--------DFKEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~--------~l~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
..++++++.|.+.|++.+.+=++|+-++.=|.+++...| +-+.++++ .-.+|+++---+..-.-.+...+.
T Consensus 30 ~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm-~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~~~~~i~~ 108 (226)
T TIGR00055 30 KSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM-ELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKK 108 (226)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHH
Confidence 467778888889999999999999999999999887554 33333332 123566655444444444444433
Q ss_pred H
Q 024577 254 A 254 (265)
Q Consensus 254 ~ 254 (265)
+
T Consensus 109 ~ 109 (226)
T TIGR00055 109 A 109 (226)
T ss_pred H
Confidence 3
No 39
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.26 E-value=2e+02 Score=26.12 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...+.++++.|.+.|++.|.+=++|+.++.=|.++....|
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm 96 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL 96 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH
Confidence 3566778888889999999999999999999998887655
No 40
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.48 E-value=2.6e+02 Score=25.18 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...+.+++..|.+.|++.|.+=++|++++.=|.+++...|
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm 83 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLM 83 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHH
Confidence 3566777888889999999999999999999998776443
No 41
>CHL00194 ycf39 Ycf39; Provisional
Probab=38.61 E-value=1.8e+02 Score=26.40 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=27.8
Q ss_pred CceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeee
Q 024577 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAf 201 (265)
++.|||++++.+.........=.....++++.|.+.|++.+.+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 5789998876554322111111245678889999999987766
No 42
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.20 E-value=2.7e+02 Score=24.91 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
..++++++.|.+.|++.+.+=++|+-++.=|.+++...|
T Consensus 35 ~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm 73 (233)
T PRK14833 35 KTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM 73 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH
Confidence 456777888889999999999999999999999887654
No 43
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.63 E-value=2.7e+02 Score=25.17 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAV 219 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i 219 (265)
...+++++..|.+.|++.|.+=++|++++.=|.++....
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 356677888888999999999999999999999887644
No 44
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.33 E-value=3e+02 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...++++++.|.+.|++.|.+=++|+-++.=|.+++...|
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm 72 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM 72 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH
Confidence 3567778888889999999999999999999999887554
No 45
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.31 E-value=3.3e+02 Score=24.80 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...++++++.|.+.|++.+.+=++|+-++.=|++++...|
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm 87 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM 87 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 3567788888889999999999999999999999887655
No 46
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=34.80 E-value=2e+02 Score=27.35 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeec
Q 024577 158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202 (265)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP 202 (265)
+++.|||++++.+.........-.....++++.|.+.|++.+.+-
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999998875432221111223456788898988898877653
No 47
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.59 E-value=3.4e+02 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEF 227 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~f 227 (265)
..++++++.|.+.|++.|.+=++|+-++.=|.++....| +-+.++
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm-~l~~~~ 68 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM-ELFVWA 68 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHH-HHHHHH
Confidence 456777888889999999999999999999988877543 334433
No 48
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=32.26 E-value=53 Score=27.10 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=30.9
Q ss_pred hhHHHHhhhcccccCCCCccccccccccccccCCCCCCcceecCCCceEEEEECc
Q 024577 35 NSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGD 89 (265)
Q Consensus 35 ~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~I~I~~GD 89 (265)
=||+++.++||...++.+.+....... .+...-..|.+.++.++++=.++
T Consensus 29 ~YLrrEdkREGYPLe~d~~~~~~~~g~-----~~~P~pKTF~L~~G~t~tvP~~~ 78 (136)
T PF03967_consen 29 YYLRREDKREGYPLESDDGGRAKNQGF-----PPLPSPKTFKLPHGRTVTVPNPE 78 (136)
T ss_dssp HHHHHHTTSSSTSSB-TTSSCSSSSHC-----CTS---EEEEETTTTEEEES-S-
T ss_pred HHHhccccccCCCcccCCCCccccCCC-----CCCCCCCEEECCCCCeEECCCCC
Confidence 389999999999998887665433333 23445667888776666665544
No 49
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=31.73 E-value=2.2e+02 Score=25.05 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
..++++++.|.+.|++.|.+=++|+.+++=|.++....|
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm 63 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM 63 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH
Confidence 445677778888999999999999999999999986554
No 50
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.09 E-value=3.8e+02 Score=24.23 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 177 EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 177 ~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...-...+.+++..|.+.|++.+.+=++|+.++.=|.++....|
T Consensus 48 h~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 48 HKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 34566678889999999999999999999999999998887665
No 51
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=31.00 E-value=82 Score=29.06 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=29.1
Q ss_pred CceEEEEcCcccCCCC--ChHHHH---HHHHHHHHHHHHHcCceeeeecc
Q 024577 159 ASHVIHTVGPIYDADS--NPEASL---RNAYKNSLSVAKENNIQYIAFTA 203 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~--~~~~~L---~~~y~~~L~~A~~~~i~SIAfP~ 203 (265)
+++|||.++....... ...... -.+..++|+.|.+.+++.+.++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6799999985322111 122222 24567889999999998888764
No 52
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=30.77 E-value=3.6e+02 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...++++++.|.+.|++.+.+=++|+-++.=|.+++.-.|
T Consensus 49 ~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 49 SKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 3567788888999999999999999999999999987655
No 53
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.83 E-value=73 Score=25.94 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=28.4
Q ss_pred CCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeee
Q 024577 158 PASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAF 201 (265)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAf 201 (265)
+|+.|||+++|.+.+ ...++++++.+.+.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPKD--------VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTTH--------HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhccc--------cccccccccccccccccccee
Confidence 378999999886541 667888888888889887776
No 54
>PRK01060 endonuclease IV; Provisional
Probab=27.94 E-value=2.9e+02 Score=24.43 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEee
Q 024577 179 SLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMF 239 (265)
Q Consensus 179 ~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~ 239 (265)
.-...++++++.|.+.|.+.|.+- -|......+.+.+-+.+.+.+...+..-..|.+.+=
T Consensus 86 ~s~~~~~~~i~~A~~lga~~vv~h-~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iE 145 (281)
T PRK01060 86 KSRDFLIQEIERCAALGAKLLVFH-PGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLE 145 (281)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc-CCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 334568889999999999988883 111122334445666677777665433234666653
No 55
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=27.72 E-value=1.6e+02 Score=26.23 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=26.8
Q ss_pred CceEEEEcCcccCCCCChH-HHHH---HHHHHHHHHHHHc-Cceeeeec
Q 024577 159 ASHVIHTVGPIYDADSNPE-ASLR---NAYKNSLSVAKEN-NIQYIAFT 202 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~-~~L~---~~y~~~L~~A~~~-~i~SIAfP 202 (265)
+++|||+++|......... ..+. ....++|+.|.+. +++.+.+.
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 5899999998533211222 2222 4556778877776 77777653
No 56
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.69 E-value=4.6e+02 Score=23.65 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc------CCCeEEEEeeCcchHHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN------DFKEVSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~------~l~~V~~v~~~~~~~~~~~~~f~ 252 (265)
...++++++.|.+.|++.|.+=++|+-++.=|+++....| +-+.+++. .-.+|+++---+..-.-.+...+
T Consensus 40 ~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm-~l~~~~l~~~~~~~~~irir~iG~~~~Lp~~l~~~i~ 116 (242)
T PRK14838 40 AETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALM-SLLLDSIEEETFMKNNIRFRIIGDIAKLPEEVQERLN 116 (242)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHH-HHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHH
Confidence 3567778888889999999999999999999998887554 33443332 12345555543333333333333
No 57
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.53 E-value=4.7e+02 Score=23.70 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAV 219 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i 219 (265)
..+.+++..|.+.|++.|.+=++|+-++.=|.+++...
T Consensus 45 ~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~L 82 (249)
T PRK14834 45 EALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDL 82 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHH
Confidence 45677778888999999999999999999999888754
No 58
>PF01831 Peptidase_C16: Peptidase C16 family; InterPro: IPR002705 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains coronavirus cysteine endopeptidases that belong to MEROPS peptidase families C30 (clan PA) and C16 (subfamiles C16A and C16B, clan CA). These peptidase are involved in viral polyprotein processing. All coronaviruses encodes between one and two accessory cysteine proteinases that recognise and process one or two sites in the amino-terminal half of the replicase polyprotein during assembly of the viral replication complex. MHV, HCoV and TGEV encode two accesssory proteinases, called coronavirus papain-like proteinase 1 and 2 (PL1-PRO and PL2-PRO). IBV and SARS encodes only one called PL-PRO []. Coronavirus papain-like proteinases 1 and 2 have restricted specificities, cleaving respectively two and one bond(s)in the polyprotein. This restricted activity may be due to extended specificity sites: Arg or Lys at the cleavage site position P5 are required for PL1-PRO [], and Phe at the cleavage site position P6 is required for PL2-PRO []. PL1-PRO releases p28 and p65 from the N terminus of the polyprotein; PL2-PRO cleaves between p210 and p150. ; GO: 0003968 RNA-directed RNA polymerase activity, 0008234 cysteine-type peptidase activity, 0006508 proteolysis
Probab=26.61 E-value=24 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=27.7
Q ss_pred cccccccccCCCCCCcceecCCCceEEEEECcc
Q 024577 58 VSVTMSFSSDQRSEDGHFKLSESAALVINKGDI 90 (265)
Q Consensus 58 ~~~~~~~~~~~~~~~~~f~~~~~~~I~I~~GDI 90 (265)
++..|+|++++..-...|...-.+.|..++|||
T Consensus 216 vghgmsfsms~feiaqlyg~citpnvcfvkgdi 248 (249)
T PF01831_consen 216 VGHGMSFSMSSFEIAQLYGSCITPNVCFVKGDI 248 (249)
T ss_pred eecceeEecCHHHHHHHhccccCCceEEEeccc
Confidence 345699999988888888877788999999997
No 59
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.71 E-value=4.9e+02 Score=23.94 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
..+.++++.|.+.|++.|.+=++|+-++.=|++++...|
T Consensus 72 ~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm 110 (275)
T PRK14835 72 QKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLM 110 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHH
Confidence 456778888889999999999999999999998887664
No 60
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=25.50 E-value=5.1e+02 Score=23.43 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH---HHHHHHHhcC--CCeEEEEeeCc
Q 024577 179 SLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA---LSTVKEFAND--FKEVSLPMFLL 241 (265)
Q Consensus 179 ~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~---l~ai~~fl~~--l~~V~~v~~~~ 241 (265)
.-....+.++..|.+.|++.+.+=++||.++.=|.++...+| .+.++++... -.+|++.+..+
T Consensus 44 ~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~~~~~l~~~~v~v~~iG~ 111 (245)
T COG0020 44 AGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALREELKKLHKNGVRIRIIGD 111 (245)
T ss_pred HhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEec
Confidence 444567777888888999999999999999999988876633 3444444422 13455554444
No 61
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.61 E-value=5.3e+02 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 177 EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 177 ~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...-...+++++..|.+.|++.+.+=++|+.++.=|.++....|
T Consensus 40 H~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm 83 (253)
T PRK14836 40 HRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALM 83 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHH
Confidence 34566788899999999999999999999999999988876554
No 62
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.73 E-value=4.5e+02 Score=25.71 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHcCceeeee-cccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 024577 179 SLRNAYKNSLSVAKENNIQYIAF-TAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPM 238 (265)
Q Consensus 179 ~L~~~y~~~L~~A~~~~i~SIAf-P~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~ 238 (265)
.=...++..|+.|.+.|+..|.| |.- .....+.+++-+.+.+++.+-+..-..|.+++
T Consensus 215 kSv~~~~~eL~rA~~LGa~~VV~HPGs--~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlL 273 (413)
T PTZ00372 215 KSYDAFLDDLQRCEQLGIKLYNFHPGS--TVGQCSKEEGIKNIADCINKAHEETKSVIIVL 273 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCc--CCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 33566888899999999999999 433 23344667777777777766544333455555
No 63
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.46 E-value=4.8e+02 Score=22.88 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeeCc--------chHHHHHHHHH
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGV-YGYPYEEAAAVALSTVKEFANDFKEVSLPMFLL--------HITALNHCMFS 252 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~-~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~~~--------~~~~~~~~~f~ 252 (265)
.-++.++..|.+.|.+.|.+- +|. ...+.+++-+.+.+.+.+..+.-..|.+.+=+- ....-.....+
T Consensus 84 ~~l~~~i~~A~~lGa~~vv~h---~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~ 160 (273)
T smart00518 84 ERLIDEIKRCEELGIKALVFH---PGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIID 160 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEc---cccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHH
Confidence 457888899999999998872 222 234566766777777766655323455544221 11223444444
Q ss_pred HHHH--hhhhhhccC
Q 024577 253 FASR--FLKLIIDCG 265 (265)
Q Consensus 253 ~~~~--~~~~~~~~~ 265 (265)
.+.. -.+.++|+|
T Consensus 161 ~v~~~~~~g~~lD~g 175 (273)
T smart00518 161 LIKELDRIGVCIDTC 175 (273)
T ss_pred hcCCCCCeEEEEEcc
Confidence 4443 356777765
No 64
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=1.1e+02 Score=29.79 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=42.7
Q ss_pred cCCCcEEEcCCCCCCC-ceEEEEcCcc-cCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccC
Q 024577 144 CPIGEARITPGFKLPA-SHVIHTVGPI-YDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCG 207 (265)
Q Consensus 144 l~~G~vviT~a~~L~~-k~IIH~V~P~-~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG 207 (265)
+-+|++.++..-.+.- -.++|.+.-. ...+. ++..---..+||+++.|..+.+.+|.+|++-..
T Consensus 417 llP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid 483 (598)
T KOG4506|consen 417 LLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLID 483 (598)
T ss_pred cCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEec
Confidence 4568888877665543 3466765432 22222 333334467899999999999999999998753
No 65
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.10 E-value=2.2e+02 Score=26.69 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=33.5
Q ss_pred CCceEEEEcCcccCCCCChHHHHHH---HHHHHHHHHHHcCceeeee
Q 024577 158 PASHVIHTVGPIYDADSNPEASLRN---AYKNSLSVAKENNIQYIAF 201 (265)
Q Consensus 158 ~~k~IIH~V~P~~~~~~~~~~~L~~---~y~~~L~~A~~~~i~SIAf 201 (265)
.|+.|+|++|+.-..+....+.|.. .++++.+...+.+.+.|.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4789999999864433334566777 8899999998999888766
No 66
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=21.38 E-value=5.1e+02 Score=24.77 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeee--cccccCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 024577 177 EASLRNAYKNSLSVAKENNIQYIAF--TAISCGV-YGYPYEEAAAVALSTVKEFANDFKEVSLPMFL 240 (265)
Q Consensus 177 ~~~L~~~y~~~L~~A~~~~i~SIAf--P~IgtG~-~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~~ 240 (265)
...+..++++.++.+...|++.|.+ |+||+|. .+|..+.+.+++=.+...+...--++.+.+..
T Consensus 141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~ 207 (344)
T PRK06052 141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS 207 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh
Confidence 3567788888888888999999999 9999996 57777777666544433332221245554444
No 67
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=21.37 E-value=1.2e+02 Score=23.54 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.2
Q ss_pred ceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecc
Q 024577 160 SHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (265)
Q Consensus 160 k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~ 203 (265)
-.|.|+..|.|-.+.- .=+..+..+|+.|.+.|++-|.+|.
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 3677999998766542 2334567889999999999998876
No 68
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=20.88 E-value=2.3e+02 Score=25.42 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=26.2
Q ss_pred CceEEEEcCcccCCCCCh-HHHHH---HHHHHHHHHHHHc-Cceeeeec
Q 024577 159 ASHVIHTVGPIYDADSNP-EASLR---NAYKNSLSVAKEN-NIQYIAFT 202 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~-~~~L~---~~y~~~L~~A~~~-~i~SIAfP 202 (265)
+++|||+++|........ ...+. ....++|+.|.+. +++.|.+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 689999999853221111 12222 3456777777764 67777664
No 69
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=20.83 E-value=1.6e+02 Score=25.91 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=27.3
Q ss_pred CCceEEEEcCccc----CCCCChHHH---HHHHHHHHHHHHHHcCceeeee
Q 024577 158 PASHVIHTVGPIY----DADSNPEAS---LRNAYKNSLSVAKENNIQYIAF 201 (265)
Q Consensus 158 ~~k~IIH~V~P~~----~~~~~~~~~---L~~~y~~~L~~A~~~~i~SIAf 201 (265)
.+++|||++++.- ... ..... -.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMT-YPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhh-CcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3589999998631 111 12222 2235678888998888877776
Done!