Query 024577
Match_columns 265
No_of_seqs 178 out of 1256
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6z_A Poly [ADP-ribose] polym 100.0 2.8E-46 9.5E-51 327.5 16.4 177 72-254 28-212 (214)
2 3q71_A Poly [ADP-ribose] polym 100.0 1.5E-45 5.2E-50 323.9 20.7 176 77-261 35-219 (221)
3 1yd9_A Core histone macro-H2A. 100.0 8.5E-46 2.9E-50 319.9 17.6 169 77-252 15-188 (193)
4 2xd7_A Core histone macro-H2A. 100.0 1.1E-45 3.9E-50 319.1 17.8 169 77-252 15-191 (193)
5 1spv_A Putative polyprotein/ph 100.0 1.9E-45 6.5E-50 315.4 18.5 168 80-253 2-173 (184)
6 4abl_A Poly [ADP-ribose] polym 100.0 7.2E-45 2.4E-49 311.6 19.8 166 68-253 10-180 (183)
7 2x47_A Macro domain-containing 100.0 3.2E-44 1.1E-48 318.5 20.3 171 73-253 52-230 (235)
8 3kh6_A Poly [ADP-ribose] polym 100.0 1.3E-42 4.6E-47 300.9 19.5 164 71-254 24-192 (199)
9 2dx6_A Hypothetical protein TT 100.0 8E-43 2.7E-47 292.3 17.2 157 81-250 2-158 (159)
10 3eti_A X (ADRP) domain, macro 100.0 2.1E-43 7.2E-48 298.6 11.3 155 80-252 9-167 (168)
11 1vhu_A Hypothetical protein AF 100.0 4.8E-42 1.6E-46 300.1 14.1 169 76-253 17-199 (211)
12 3gpg_A NSP3, non-structural pr 100.0 6.9E-41 2.4E-45 283.1 11.8 155 80-253 9-166 (168)
13 3gqe_A Non-structural protein 100.0 2.5E-40 8.7E-45 279.7 14.8 156 80-253 3-160 (168)
14 3ejg_A Non-structural protein 100.0 2.1E-40 7.3E-45 285.3 10.6 152 80-252 37-192 (193)
15 3ejf_A Non-structural protein 100.0 1.2E-39 4.2E-44 277.1 11.9 158 77-249 10-173 (176)
16 2acf_A Replicase polyprotein 1 100.0 1.4E-39 4.7E-44 278.5 11.2 148 80-247 19-170 (182)
17 2vri_A Non-structural protein 100.0 1.1E-39 3.6E-44 277.5 8.0 163 72-253 10-172 (174)
18 1njr_A 32.1 kDa protein in ADH 100.0 2E-38 6.7E-43 287.8 9.3 188 27-247 19-242 (284)
19 4gua_A Non-structural polyprot 100.0 1.6E-34 5.6E-39 277.5 13.5 156 80-254 343-501 (670)
20 2jyc_A Uncharacterized protein 100.0 5.2E-29 1.8E-33 209.0 14.9 142 77-239 16-158 (160)
21 2eee_A Uncharacterized protein 100.0 6.6E-29 2.3E-33 205.8 14.0 140 80-240 8-148 (149)
22 2fg1_A Conserved hypothetical 99.9 4.1E-27 1.4E-31 196.7 10.6 135 82-226 5-148 (158)
23 3sig_A PArg, poly(ADP-ribose) 99.0 4.5E-10 1.5E-14 101.2 9.1 92 162-253 172-276 (277)
24 3dhn_A NAD-dependent epimerase 55.8 27 0.00092 28.2 6.6 44 159-203 68-111 (227)
25 2vg0_A Short-chain Z-isoprenyl 47.3 26 0.00088 30.0 5.2 48 181-229 33-80 (227)
26 4h8e_A Undecaprenyl pyrophosph 42.4 1.1E+02 0.0038 26.6 8.6 40 181-220 54-93 (256)
27 3ugs_B Undecaprenyl pyrophosph 42.0 96 0.0033 26.5 7.9 46 182-228 37-82 (225)
28 2zvr_A Uncharacterized protein 37.9 85 0.0029 26.4 7.1 61 178-239 109-169 (290)
29 2vg3_A Undecaprenyl pyrophosph 37.3 1.4E+02 0.0047 26.4 8.4 40 181-220 85-124 (284)
30 3sgv_B Undecaprenyl pyrophosph 36.6 1.1E+02 0.0038 26.6 7.6 41 180-220 46-86 (253)
31 3ngf_A AP endonuclease, family 34.3 1.2E+02 0.0042 25.1 7.5 61 177-239 88-150 (269)
32 3h2s_A Putative NADH-flavin re 34.0 1.4E+02 0.0048 23.6 7.6 41 159-202 63-103 (224)
33 2d2r_A Undecaprenyl pyrophosph 33.7 1.2E+02 0.0042 26.0 7.4 40 181-220 45-84 (245)
34 1f75_A Undecaprenyl pyrophosph 30.6 1.2E+02 0.0041 26.1 6.8 37 181-217 50-86 (249)
35 3pao_A Adenosine deaminase; st 28.8 2.3E+02 0.008 25.0 8.7 54 176-230 72-128 (326)
36 3qas_B Undecaprenyl pyrophosph 27.9 2E+02 0.0069 24.8 7.8 39 181-219 47-85 (253)
37 3aal_A Probable endonuclease 4 26.3 2.2E+02 0.0074 24.0 7.8 62 178-241 90-151 (303)
38 2x7v_A Probable endonuclease 4 25.9 2.6E+02 0.0089 22.9 8.2 61 178-240 85-145 (287)
39 3dct_B Nuclear receptor coacti 21.8 29 0.00098 18.4 0.7 8 4-11 6-13 (21)
40 2kwv_A RAD30 homolog B, DNA po 21.3 15 0.00051 23.8 -0.6 35 12-46 8-42 (48)
41 3ew7_A LMO0794 protein; Q8Y8U8 21.0 89 0.0031 24.6 4.0 41 159-203 62-102 (221)
42 3qc0_A Sugar isomerase; TIM ba 20.2 3.1E+02 0.011 22.2 7.5 52 178-229 79-130 (275)
43 2c29_D Dihydroflavonol 4-reduc 20.1 1.9E+02 0.0064 24.6 6.2 45 159-203 78-127 (337)
No 1
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=2.8e-46 Score=327.47 Aligned_cols=177 Identities=32% Similarity=0.428 Sum_probs=161.8
Q ss_pred CcceecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEE
Q 024577 72 DGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARI 151 (265)
Q Consensus 72 ~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vvi 151 (265)
...+.+.++.+|.|++||||++++ |||||+||+.|.+++||++||+++||++|++||+++++. .+++++|++++
T Consensus 28 ~~~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~i 101 (214)
T 3q6z_A 28 FSRTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATI 101 (214)
T ss_dssp CEEEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEE
T ss_pred EEEEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEE
Confidence 345567778999999999999987 999999999999999999999999999999999988632 34799999999
Q ss_pred cCCCCCCCceEEEEcCcccCCCCC--hHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc
Q 024577 152 TPGFKLPASHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN 229 (265)
Q Consensus 152 T~a~~L~~k~IIH~V~P~~~~~~~--~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~ 229 (265)
|++|+||||||||+|||.|+.+.. ..+.|++||++||++|++++++|||||+||||++|||++++|++|++++++|++
T Consensus 102 T~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~ 181 (214)
T 3q6z_A 102 SKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQ 181 (214)
T ss_dssp EECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTS
T ss_pred EcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987642 357899999999999999999999999999999999999999999999999984
Q ss_pred ------CCCeEEEEeeCcchHHHHHHHHHHH
Q 024577 230 ------DFKEVSLPMFLLHITALNHCMFSFA 254 (265)
Q Consensus 230 ------~l~~V~~v~~~~~~~~~~~~~f~~~ 254 (265)
.+++|+||+|+++.+++|+..++..
T Consensus 182 ~~~~~~~l~~V~fv~~d~~~~~~f~~~l~~~ 212 (214)
T 3q6z_A 182 FKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV 212 (214)
T ss_dssp SCC--CCCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4689999999999999999988754
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=323.95 Aligned_cols=176 Identities=22% Similarity=0.323 Sum_probs=154.9
Q ss_pred cCCCceEEEEECccceeccCCCCcEEEEcCCCCC-CCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCC
Q 024577 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERM-LGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155 (265)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l-~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~ 155 (265)
..++.+|.|++||||++++ |||||+||+.| .+++||++||+++||++|++||+++.. ++++++|++++|++|
T Consensus 35 t~~g~~I~i~~GDIt~~~v----DAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~g~ 107 (221)
T 3q71_A 35 SPGGLQMLLVKEGVQNAKT----DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTSSW 107 (221)
T ss_dssp CTTCCEEEEEESCGGGCCS----SEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEECT
T ss_pred ecCCcEEEEEeCcccCCcC----CEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEcCC
Confidence 4457899999999999977 99999999999 578899999999999999999998752 457999999999999
Q ss_pred CCCCceEEEEcCcccCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc-----
Q 024577 156 KLPASHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN----- 229 (265)
Q Consensus 156 ~L~~k~IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~----- 229 (265)
+||||||||+|||.|+.+. .+.+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 108 ~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~ 187 (221)
T 3q71_A 108 NLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLK 187 (221)
T ss_dssp TSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998865 2458999999999999999999999999999999999999999999999999984
Q ss_pred CCCeEEEEeeCcchH--HHHHHHHHHHHHhhhhh
Q 024577 230 DFKEVSLPMFLLHIT--ALNHCMFSFASRFLKLI 261 (265)
Q Consensus 230 ~l~~V~~v~~~~~~~--~~~~~~f~~~~~~~~~~ 261 (265)
.+++|+||+|+++.. ++|...++ +||..+.
T Consensus 188 ~l~~V~fv~f~~d~~~~~~f~~~l~--~r~~~~~ 219 (221)
T 3q71_A 188 TLQEVHFLLHPSDHENIQAFSDEFA--RRANGNL 219 (221)
T ss_dssp SCCEEEEEECTTCHHHHHHHHHHHH--HHHC---
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHH--HHccCCC
Confidence 478999999987655 66666554 4776653
No 3
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=8.5e-46 Score=319.85 Aligned_cols=169 Identities=25% Similarity=0.414 Sum_probs=156.4
Q ss_pred cCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCC
Q 024577 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (265)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~ 156 (265)
...+.+|.|++||||++++ |||||+||+.+.+++||++||++++|++|++||+++++. .+++++|++++|++++
T Consensus 15 ~~~~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~ 88 (193)
T 1yd9_A 15 LFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKK--NGPLEVAGAAVSAGHG 88 (193)
T ss_dssp CTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--HCSCCTTCEEEEECTT
T ss_pred cCCCCEEEEEeCccCcCcC----CEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCCC
Confidence 3447899999999999977 999999999999999999999999999999999987632 2479999999999999
Q ss_pred CCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc-----CC
Q 024577 157 LPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN-----DF 231 (265)
Q Consensus 157 L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~-----~l 231 (265)
||||||||+|||.|+. ....+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++ .+
T Consensus 89 L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l 167 (193)
T 1yd9_A 89 LPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSI 167 (193)
T ss_dssp SSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCC
T ss_pred CCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999975 35678999999999999999999999999999999999999999999999999985 47
Q ss_pred CeEEEEeeCcchHHHHHHHHH
Q 024577 232 KEVSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 232 ~~V~~v~~~~~~~~~~~~~f~ 252 (265)
++|+||+|+++.+.+|+..+.
T Consensus 168 ~~V~fv~~~~~~~~~~~~~l~ 188 (193)
T 1yd9_A 168 KTVYFVLFDSESIGIYVQEMA 188 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHH
Confidence 899999999999999999876
No 4
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=319.06 Aligned_cols=169 Identities=24% Similarity=0.342 Sum_probs=157.0
Q ss_pred cCCCceEEEEECcccee---ccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcC
Q 024577 77 LSESAALVINKGDITKW---SVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITP 153 (265)
Q Consensus 77 ~~~~~~I~I~~GDIt~~---~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~ 153 (265)
+..+.+|.+++||||++ ++ |||||+||+.|.+++||++||++++|++|++||+++++. .+++++|++++|+
T Consensus 15 ~~~~~~i~i~~GDIt~~~~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~ 88 (193)
T 2xd7_A 15 LVLGQKLSLTQSDISHIGSMRV----EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKS--QGPLEVAEAAVSQ 88 (193)
T ss_dssp CTTSCEEEEEECCGGGGGGCCC----SEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH--TCSCCTTCEEEEE
T ss_pred cCCCCEEEEEeCcccccCCCCC----CEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCeEEee
Confidence 44478999999999999 77 999999999999999999999999999999999987642 3489999999999
Q ss_pred CCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc----
Q 024577 154 GFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---- 229 (265)
Q Consensus 154 a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~---- 229 (265)
+++||||||||+|||.|+.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 89 ~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~ 167 (193)
T 2xd7_A 89 SSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSA 167 (193)
T ss_dssp CTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999754 5678999999999999999999999999999999999999999999999999985
Q ss_pred -CCCeEEEEeeCcchHHHHHHHHH
Q 024577 230 -DFKEVSLPMFLLHITALNHCMFS 252 (265)
Q Consensus 230 -~l~~V~~v~~~~~~~~~~~~~f~ 252 (265)
.+++|+||+|+++.+.+|+..++
T Consensus 168 ~~l~~V~fv~~~~~~~~~~~~~l~ 191 (193)
T 2xd7_A 168 SSLKNVYFLLFDSESIGIYVQEMA 191 (193)
T ss_dssp CCCCEEEEEECSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 5
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=1.9e-45 Score=315.44 Aligned_cols=168 Identities=44% Similarity=0.689 Sum_probs=155.8
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
+.+|.+++||||++++ |||||+||+.+.+++||++||++++|++|++||+++++ ..+++++|++++|++++|||
T Consensus 2 ~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~--~~g~~~~G~a~iT~~~~L~~ 75 (184)
T 1spv_A 2 KTRIHVVQGDITKLAV----DVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQ--QQGDCPTGHAVITLAGDLPA 75 (184)
T ss_dssp -CCEEEEESCGGGCCC----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHH--HHCSCCTTCEEEECCTTSSS
T ss_pred CCeEEEEeCcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHH--hcCCCCCCCEEEeeCCCCCC
Confidence 3579999999999977 99999999999999999999999999999999999863 22489999999999999999
Q ss_pred ceEEEEcCcccCCCC-ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeEE
Q 024577 160 SHVIHTVGPIYDADS-NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN---DFKEVS 235 (265)
Q Consensus 160 k~IIH~V~P~~~~~~-~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~---~l~~V~ 235 (265)
|||||+|||.|+.+. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++ .+++|+
T Consensus 76 k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~ 155 (184)
T 1spv_A 76 KAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVY 155 (184)
T ss_dssp SEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEE
T ss_pred CEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 999999999998754 4678999999999999999999999999999999999999999999999999986 578999
Q ss_pred EEeeCcchHHHHHHHHHH
Q 024577 236 LPMFLLHITALNHCMFSF 253 (265)
Q Consensus 236 ~v~~~~~~~~~~~~~f~~ 253 (265)
||+|+++.+.+|+..+..
T Consensus 156 ~v~~~~~~~~~~~~~l~~ 173 (184)
T 1spv_A 156 FVCYDEENAHLYERLLTQ 173 (184)
T ss_dssp EEESSHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHH
Confidence 999999999999998873
No 6
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=7.2e-45 Score=311.59 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=154.3
Q ss_pred CCCCCcceecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCC
Q 024577 68 QRSEDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIG 147 (265)
Q Consensus 68 ~~~~~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G 147 (265)
+..+.+.+++. +.+|++++||||++++ |||||+||+.+.+++||++||+++||++|++||+++. ++++|
T Consensus 10 ~~~~~~~~~ig-~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~G 78 (183)
T 4abl_A 10 PDSGVYEMKIG-SIIFQVASGDITKEEA----DVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQA------QQRKN 78 (183)
T ss_dssp SSTTCEEEEET-TEEEEEEESCGGGCBC----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSCC
T ss_pred CCCCceEEEEC-CEEEEEEeCcccCccc----CEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhc------CCCCC
Confidence 34455556665 7999999999999987 9999999999999999999999999999999999874 79999
Q ss_pred cEEEcCCCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 024577 148 EARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEF 227 (265)
Q Consensus 148 ~vviT~a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~f 227 (265)
++++|++|+||||||||+|||.| |++||++||++|.+++++|||||+||||++|||++++|++|++++++|
T Consensus 79 ~a~iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~f 149 (183)
T 4abl_A 79 DYIITGGGFLRCKNIIHVIGGND---------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDF 149 (183)
T ss_dssp SEEEEECTTSBSSEEEEEETTSC---------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCCEEEEeCcHHH---------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 999999999999999999999999999999999999999999999999
Q ss_pred hc-----CCCeEEEEeeCcchHHHHHHHHHH
Q 024577 228 AN-----DFKEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 228 l~-----~l~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
++ .+++|+||+|+++.+.+|+..++.
T Consensus 150 l~~~~~~~l~~V~fv~f~~~~~~~f~~~l~k 180 (183)
T 4abl_A 150 VQKGSAQSVKKVKVVIFLPQVLDVFYANMKK 180 (183)
T ss_dssp HHTTCCSSCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 85 468999999999999999988765
No 7
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=318.54 Aligned_cols=171 Identities=41% Similarity=0.715 Sum_probs=156.8
Q ss_pred cceecCC--CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEE
Q 024577 73 GHFKLSE--SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEAR 150 (265)
Q Consensus 73 ~~f~~~~--~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vv 150 (265)
..|+.+. |.+|.|++||||++++ |||||+||+.|.+++||++||++++|++|++||+++. .+++|+++
T Consensus 52 ~~~~~~~~~~~~i~i~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~ 121 (235)
T 2x47_A 52 PRYKKDKQLNEKISLLRSDITKLEV----DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAK 121 (235)
T ss_dssp -CCCCCHHHHTTEEEEESCGGGEES----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEE
T ss_pred CCCCcccccCCEEEEEeCccCcccC----CEEEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceE
Confidence 3455544 6799999999999987 9999999999999999999999999999999998763 79999999
Q ss_pred EcCCCCCCCceEEEEcCcccCCCC--ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 024577 151 ITPGFKLPASHVIHTVGPIYDADS--NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (265)
Q Consensus 151 iT~a~~L~~k~IIH~V~P~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl 228 (265)
+|++|+|||+||||+|||.|+++. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 122 iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl 201 (235)
T 2x47_A 122 ITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWL 201 (235)
T ss_dssp EEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999997643 356899999999999999999999999999999999999999999999999998
Q ss_pred c----CCCeEEEEeeCcchHHHHHHHHHH
Q 024577 229 N----DFKEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 229 ~----~l~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
+ .+++|+||+|+++.+.+|+..+..
T Consensus 202 ~~~~~~l~~V~fv~f~~~~~~~y~~~l~~ 230 (235)
T 2x47_A 202 EQHKDKVDRLIICVFLEKDEDIYRSRLPH 230 (235)
T ss_dssp HHHGGGCSEEEEEECSHHHHHHHHHHHHH
T ss_pred HhCCCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 5 488999999999999999988763
No 8
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=1.3e-42 Score=300.91 Aligned_cols=164 Identities=21% Similarity=0.302 Sum_probs=152.2
Q ss_pred CCcceecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEE
Q 024577 71 EDGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEAR 150 (265)
Q Consensus 71 ~~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vv 150 (265)
..+.+++. +.+|++++||||++++ |||||+||+.+.+++||++||++++|++|++||+++. ++++|+++
T Consensus 24 ~~~~~~i~-~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~a~ 92 (199)
T 3kh6_A 24 TAYEMKIG-AITFQVATGDIATEQV----DVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLA------AQPHRDFI 92 (199)
T ss_dssp CEEEEEET-TEEEEEEESCGGGCCS----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCSSE
T ss_pred CceEEEEC-CEEEEEEecccccCcC----CEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCeEE
Confidence 34455565 6999999999999976 9999999999999999999999999999999999874 68999999
Q ss_pred EcCCCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc-
Q 024577 151 ITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN- 229 (265)
Q Consensus 151 iT~a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~- 229 (265)
+|++++|+||||||+|||. .|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++
T Consensus 93 iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~ 163 (199)
T 3kh6_A 93 ITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQ 163 (199)
T ss_dssp EEECTTSSSSEEEEEETTS---------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCEEEEeCCCH---------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999995 399999999999999999999999999999999999999999999999985
Q ss_pred ----CCCeEEEEeeCcchHHHHHHHHHHH
Q 024577 230 ----DFKEVSLPMFLLHITALNHCMFSFA 254 (265)
Q Consensus 230 ----~l~~V~~v~~~~~~~~~~~~~f~~~ 254 (265)
.+++|+||+|+++.+++|+..++..
T Consensus 164 ~~~~~l~~V~fv~f~~~~~~~f~~~l~~~ 192 (199)
T 3kh6_A 164 HSTPSLKTVKVVIFQPELLNIFYDSMKKR 192 (199)
T ss_dssp CSSCSCCEEEEEESSTHHHHHHHHHHHTT
T ss_pred cCCCCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 4789999999999999999988753
No 9
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=8e-43 Score=292.30 Aligned_cols=157 Identities=33% Similarity=0.434 Sum_probs=148.4
Q ss_pred ceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCCc
Q 024577 81 AALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPAS 160 (265)
Q Consensus 81 ~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~k 160 (265)
.+|++++|||+++++ |||||+||+.+.+++||+++|++++|++++++|++.. ++++|++++|++++|+|+
T Consensus 2 ~~i~i~~GDI~~~~~----daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~ 71 (159)
T 2dx6_A 2 ARIRVVQGDITEFQG----DAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVR 71 (159)
T ss_dssp CEEEEEESCGGGCCS----SEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSS
T ss_pred eEEEEEECcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCC
Confidence 378999999999976 9999999999999999999999999999999998753 799999999999999999
Q ss_pred eEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 024577 161 HVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFL 240 (265)
Q Consensus 161 ~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~~ 240 (265)
||||+++|.|+. ...+.|++||++||++|.+++++|||||+||||++|+|+++++++|++++++| ..+++|+||+|+
T Consensus 72 ~Vih~vgp~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~ 148 (159)
T 2dx6_A 72 YVIHAAVLGDEP--ASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYR 148 (159)
T ss_dssp EEEEEEEESSSC--CCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESS
T ss_pred EEEEEeCCCCCC--chHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECC
Confidence 999999999982 45789999999999999999999999999999999999999999999999999 778999999999
Q ss_pred cchHHHHHHH
Q 024577 241 LHITALNHCM 250 (265)
Q Consensus 241 ~~~~~~~~~~ 250 (265)
++.+++|+..
T Consensus 149 ~~~~~~~~~~ 158 (159)
T 2dx6_A 149 EEDAEAIRRA 158 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 10
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=2.1e-43 Score=298.59 Aligned_cols=155 Identities=22% Similarity=0.274 Sum_probs=142.6
Q ss_pred CceEEEEECccce----eccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCC
Q 024577 80 SAALVINKGDITK----WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155 (265)
Q Consensus 80 ~~~I~I~~GDIt~----~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~ 155 (265)
..+|.+|+||||+ +++ |||||+||+.|.+++||++||++++|++|++||+++++ ..+++++|++++|++|
T Consensus 9 ~~~i~l~~GDIt~~~~~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~--~~g~~~~G~a~iT~g~ 82 (168)
T 3eti_A 9 AGKVSFYQGDLDVLINFLEP----DVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLK--SSKAIAPGNAVLFENV 82 (168)
T ss_dssp ETTEEEEESCHHHHHHHHCC----SEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHT--TSCCCCTTEEEEEEEE
T ss_pred CCeEEEEeCcccccCCCCCC----CEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCEEEecCC
Confidence 4689999999999 666 99999999999999999999999999999999999874 2358999999999999
Q ss_pred CCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Q 024577 156 KLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVS 235 (265)
Q Consensus 156 ~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~ 235 (265)
|+|+||||+|||.|+.. .+.+.|++||++||++ .+|||||+||||++|||++++|++|++++++ ++|+
T Consensus 83 -l~~~~VIHtVgP~~~~~-~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~ 150 (168)
T 3eti_A 83 -LEHLSVMNAVGPRNGDS-RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLN 150 (168)
T ss_dssp -ETTEEEEEEECCCTTST-THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEE
T ss_pred -CCccEEEEecCCCCCcc-hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEE
Confidence 99999999999999653 5678999999999984 4899999999999999999999999999987 7999
Q ss_pred EEeeCcchHHHHHHHHH
Q 024577 236 LPMFLLHITALNHCMFS 252 (265)
Q Consensus 236 ~v~~~~~~~~~~~~~f~ 252 (265)
||+|+++.+++|+..+.
T Consensus 151 ~v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 151 VFVYTDQERVTIENFFN 167 (168)
T ss_dssp EEECCHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHhc
Confidence 99999999999998763
No 11
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=4.8e-42 Score=300.15 Aligned_cols=169 Identities=33% Similarity=0.469 Sum_probs=154.8
Q ss_pred ecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhC----hHHHHHHhhCCccCCCcc--cCCCcE
Q 024577 76 KLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAG----PELREACCKVPEVRPEVR--CPIGEA 149 (265)
Q Consensus 76 ~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG----~~l~~ec~~~~~~~~~~~--l~~G~v 149 (265)
.+. +.+|.+++||||++++ |||||+||+.+.+++||++||++++| ++++++|+++++. .++ +++|++
T Consensus 17 ~~~-~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~--~g~~~~~~G~a 89 (211)
T 1vhu_A 17 KVG-DITLKLAQGDITQYPA----KAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ--FGRDYIDHGEV 89 (211)
T ss_dssp EET-TEEEEEEESCGGGSCC----SEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHH--HSSSCCCTTCC
T ss_pred eEC-CEEEEEEecccCcCCC----CEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHH--cCCCcccCCcE
Confidence 444 5799999999999976 99999999999999999999999999 9999999987632 124 999999
Q ss_pred EEcCCCCCCC---ceEEEEcCc----ccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHH
Q 024577 150 RITPGFKLPA---SHVIHTVGP----IYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALS 222 (265)
Q Consensus 150 viT~a~~L~~---k~IIH~V~P----~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ 222 (265)
++|++++||| |||||+||| .|+. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++
T Consensus 90 ~iT~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~ 167 (211)
T 1vhu_A 90 VVTPAMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLE 167 (211)
T ss_dssp EEEECGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred EEEECCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHH
Confidence 9999999999 999999999 9954 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCeEEEEeeCcchHHHHHHHHHH
Q 024577 223 TVKEFAN-DFKEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 223 ai~~fl~-~l~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
++++|++ ++++|+||+|+++.+.+|+..++.
T Consensus 168 ~v~~~l~~~l~~V~~v~~~~~~~~~~~~~l~~ 199 (211)
T 1vhu_A 168 AVKNFKGSAVKEVALVIYDRKSAEVALKVFER 199 (211)
T ss_dssp HHHHCCCSSCCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999984 278999999999999999998874
No 12
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=6.9e-41 Score=283.07 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=139.8
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
-+..+||+||||++++ |||||+||+.|.+++||++||++++|++++ .+++++|++++|+++ |
T Consensus 9 ~~~~~~~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~ 70 (168)
T 3gpg_A 9 APSYRVKRMDIAKNDE----ECVVNAANPRGLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---T 70 (168)
T ss_dssp CCCC-CEESCGGGCCS----SCEEEECCTTCCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---T
T ss_pred CCceEEEeCcCCcccC----CEEEeCCCcccCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---C
Confidence 4677899999999987 999999999999999999999999999752 248999999999994 9
Q ss_pred ceEEEEcCcccCCCCC--hHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcC-CCeEEE
Q 024577 160 SHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAND-FKEVSL 236 (265)
Q Consensus 160 k~IIH~V~P~~~~~~~--~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~-l~~V~~ 236 (265)
|||||+|||.|+.+.. ..+.|++||++||++|.+++++|||||+||||++|||++++|+ +++++.+|+++ +++|+|
T Consensus 71 k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~f 149 (168)
T 3gpg_A 71 YPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVVI 149 (168)
T ss_dssp EEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEEE
T ss_pred CEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEEE
Confidence 9999999999988652 3578999999999999999999999999999999999999999 88999999864 789999
Q ss_pred EeeCcchHHHHHHHHHH
Q 024577 237 PMFLLHITALNHCMFSF 253 (265)
Q Consensus 237 v~~~~~~~~~~~~~f~~ 253 (265)
|+|+++.+++|++.++.
T Consensus 150 v~f~~~~~~~y~~~l~~ 166 (168)
T 3gpg_A 150 YCRDKEWEKKISEAIQM 166 (168)
T ss_dssp EESCHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHhc
Confidence 99999999999998765
No 13
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=2.5e-40 Score=279.66 Aligned_cols=156 Identities=21% Similarity=0.314 Sum_probs=141.1
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
+++|.+|+||||++++ |||||+||+.|.+++||++||++++|++++ .+++++|++++|++ +|
T Consensus 3 ~~~i~v~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~---~~ 64 (168)
T 3gqe_A 3 APSYHVVRGDIATATE----GVIINAANSKGQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKG---AA 64 (168)
T ss_dssp CCEEEEEESCGGGCCS----SEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECC---TT
T ss_pred CCeEEEEeCcccCccc----CEEEeCCCcccCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcC---CC
Confidence 5799999999999977 999999999999999999999999999652 24899999999998 49
Q ss_pred ceEEEEcCcccCCCCC--hHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE
Q 024577 160 SHVIHTVGPIYDADSN--PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLP 237 (265)
Q Consensus 160 k~IIH~V~P~~~~~~~--~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v 237 (265)
|||||+|||.|+.+.. ..+.|++||++||++|.+++++|||||+||||++|||++++|+.|.+.+..+..++++|+||
T Consensus 65 k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~iv 144 (168)
T 3gqe_A 65 KHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIY 144 (168)
T ss_dssp CCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEEE
Confidence 9999999999988652 35789999999999999999999999999999999999999998877777766678899999
Q ss_pred eeCcchHHHHHHHHHH
Q 024577 238 MFLLHITALNHCMFSF 253 (265)
Q Consensus 238 ~~~~~~~~~~~~~f~~ 253 (265)
+|+++.++.|++....
T Consensus 145 ~fd~~~~~~~~~~~~~ 160 (168)
T 3gqe_A 145 CRDKKWEMTLKEAVAR 160 (168)
T ss_dssp ESCHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHh
Confidence 9999999999887654
No 14
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=2.1e-40 Score=285.31 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=139.2
Q ss_pred CceEEEEECccce----eccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCC
Q 024577 80 SAALVINKGDITK----WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155 (265)
Q Consensus 80 ~~~I~I~~GDIt~----~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~ 155 (265)
+.+|.+|+||||+ +++ |||||+||+.|.+++||++||++++|++|++||+++++. .+++++|++++|+++
T Consensus 37 ~~~i~l~~GDIt~~~~~~~v----DAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~--~g~~~~G~a~iT~~~ 110 (193)
T 3ejg_A 37 HDNVAFYQGDVDTVVNGVDF----DFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGL--AGKVKVGTGVMVECD 110 (193)
T ss_dssp ETTEEEEECCHHHHHHHCCC----SEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCSCCTTCEEEEEET
T ss_pred CCeEEEEeCcccccCcCCCc----CEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCC
Confidence 5699999999999 665 999999999999999999999999999999999988632 348999999999999
Q ss_pred CCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Q 024577 156 KLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVS 235 (265)
Q Consensus 156 ~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~ 235 (265)
+| ||||+|||.|+. .+.+.|++||++||++ .+|||||+||||++|||++++|+++++++++ .+|+
T Consensus 111 ~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~-----~~V~ 175 (193)
T 3ejg_A 111 SL---RIFNVVGPRKGK--HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT-----KEVK 175 (193)
T ss_dssp TE---EEEEEECCCSST--THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS-----SCEE
T ss_pred Ce---eEEEecCCCCCc--hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEE
Confidence 99 999999999965 5778999999999983 3799999999999999999999999999987 4999
Q ss_pred EEeeCcchHHHHHHHHH
Q 024577 236 LPMFLLHITALNHCMFS 252 (265)
Q Consensus 236 ~v~~~~~~~~~~~~~f~ 252 (265)
||+|+++.+++|+..+.
T Consensus 176 fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 176 VFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp EEECSHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHhc
Confidence 99999999999998763
No 15
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=1.2e-39 Score=277.12 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=137.5
Q ss_pred cCCCceEEEEECccceeccCC----CCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEc
Q 024577 77 LSESAALVINKGDITKWSVDG----SSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARIT 152 (265)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~----~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT 152 (265)
.....++++|+||||+++||. ++|||||+||+.|.+++||++||+++||++|++||+++++. .++++ +++|
T Consensus 10 ~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~---a~iT 84 (176)
T 3ejf_A 10 KPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKK--HGPQQ---RLVT 84 (176)
T ss_dssp CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHH--HCCCS---EEEE
T ss_pred CCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHh--cCCCC---eeec
Confidence 444789999999999998753 67889999999999999999999999999999999998642 23566 9999
Q ss_pred CCCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024577 153 PGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFK 232 (265)
Q Consensus 153 ~a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~ 232 (265)
+++.|++++|||+|||.|... +..++|++||++||+ ++++|||||+||||+||||++++|++|++++++ .
T Consensus 85 ~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~ 154 (176)
T 3ejf_A 85 PSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----C 154 (176)
T ss_dssp CCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----c
Confidence 999999999999999999653 567899999999998 999999999999999999999999999999984 3
Q ss_pred eEEEEeeC--cchHHHHHH
Q 024577 233 EVSLPMFL--LHITALNHC 249 (265)
Q Consensus 233 ~V~~v~~~--~~~~~~~~~ 249 (265)
+|+|++|+ ++.+++|+.
T Consensus 155 ~v~v~~~~~D~e~~~~~~~ 173 (176)
T 3ejf_A 155 TIRVLLFSLSQEHIDYFDV 173 (176)
T ss_dssp CCEEEEEESCHHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHH
Confidence 46666665 667777765
No 16
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=1.4e-39 Score=278.55 Aligned_cols=148 Identities=24% Similarity=0.336 Sum_probs=133.4
Q ss_pred CceEEEEECcccee----ccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCC
Q 024577 80 SAALVINKGDITKW----SVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGF 155 (265)
Q Consensus 80 ~~~I~I~~GDIt~~----~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~ 155 (265)
+.+|.|++||||++ ++ |||||+||+.|.+++||++||++++|++|++||+++++. .+++++|++++|+++
T Consensus 19 ~~~i~i~~GDIt~~~~~~~v----DAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~ 92 (182)
T 2acf_A 19 TDNVAIKCVDIVKEAQSANP----MVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKL--NGPLTVGGSCLLSGH 92 (182)
T ss_dssp SSSEEEEESCHHHHHHHHCC----SEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCCCCTTCEEEEECT
T ss_pred CCeEEEEeCcccccccCCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHH--cCCCCCCcEEEeeCC
Confidence 56899999999999 66 999999999999999999999999999999999987632 348999999999999
Q ss_pred CCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Q 024577 156 KLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVS 235 (265)
Q Consensus 156 ~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~ 235 (265)
+|+ +||||+|||.|+.+. +.+.|++||+++ ++++|||||+||||++|||++++|++|++++++ +|+
T Consensus 93 ~L~-~~VIH~vgP~~~~~~-~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~ 158 (182)
T 2acf_A 93 NLA-KKCLHVVGPNLNAGE-DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVY 158 (182)
T ss_dssp TTC-SEEEEECCCCGGGTC-CTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEE
T ss_pred CCC-ceEEEECCCCCCCCc-hHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEE
Confidence 995 799999999998653 466899999986 789999999999999999999999999999875 999
Q ss_pred EEeeCcchHHHH
Q 024577 236 LPMFLLHITALN 247 (265)
Q Consensus 236 ~v~~~~~~~~~~ 247 (265)
||+|+++.|..+
T Consensus 159 ~v~~d~~~y~~~ 170 (182)
T 2acf_A 159 IAVNDKALYEQV 170 (182)
T ss_dssp EEESCHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999998855533
No 17
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=1.1e-39 Score=277.51 Aligned_cols=163 Identities=21% Similarity=0.238 Sum_probs=142.8
Q ss_pred CcceecCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEE
Q 024577 72 DGHFKLSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARI 151 (265)
Q Consensus 72 ~~~f~~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vvi 151 (265)
...|.+ +.+|.+++||||++..+.++|||||+||+.|.+++||++||++++|++|++||+++++ ..+++++|++++
T Consensus 10 ~~pf~~--~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~--~~g~~~~G~a~i 85 (174)
T 2vri_A 10 TKPFAV--YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYIS--SNGPLKVGAGVM 85 (174)
T ss_dssp CCCSEE--ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHH--HHCSCCTTCEEE
T ss_pred CCccCC--CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHH--hcCCCCCCeEEE
Confidence 444554 5689999999999822223499999999999999999999999999999999998763 234899999999
Q ss_pred cCCCCCCCceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCC
Q 024577 152 TPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDF 231 (265)
Q Consensus 152 T~a~~L~~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l 231 (265)
|++++| ||||+|||.|... ..+.|++||++||++ .+|||||+||||++|||++++|++|++++++
T Consensus 86 T~~~~l---~VIH~vgP~~~~~--~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~----- 150 (174)
T 2vri_A 86 LECEKF---NVFNVVGPRTGKH--EHSLLVEAYNSILFE-----NGIPLMPLLSCGIFGVRIENSLKALFSCDIN----- 150 (174)
T ss_dssp EECSSC---EEEEEECCCSSTT--HHHHHHHHHHHHHHS-----SSCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----
T ss_pred EECCCC---EEEEEcCCCCCcc--hHHHHHHHHHHHHhh-----CCcEEeCccccCCCCCCHHHHHHHHHHHHhh-----
Confidence 999998 9999999999642 678999999999984 3499999999999999999999999999876
Q ss_pred CeEEEEeeCcchHHHHHHHHHH
Q 024577 232 KEVSLPMFLLHITALNHCMFSF 253 (265)
Q Consensus 232 ~~V~~v~~~~~~~~~~~~~f~~ 253 (265)
++|+|++|+++.+++|+..|+.
T Consensus 151 ~~V~~v~f~~~~~~~~~~~l~~ 172 (174)
T 2vri_A 151 KPLQVFVYSSNEEQAVLKFLDG 172 (174)
T ss_dssp SCEEEEECSHHHHHHHHHHHHT
T ss_pred CcEEEEEcCHHHHHHHHHHHhh
Confidence 6899999999999999998853
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=100.00 E-value=2e-38 Score=287.83 Aligned_cols=188 Identities=15% Similarity=0.096 Sum_probs=152.8
Q ss_pred ccceecchhhHHHHhhhcccccCCCCccccccccccccccCCCCCCcceecCCCceEEEEECcccee--------c-cCC
Q 024577 27 KSRTSVSDNSLATRAKAKTISVGDRGVGVTAVSVTMSFSSDQRSEDGHFKLSESAALVINKGDITKW--------S-VDG 97 (265)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~f~~~~~~~I~I~~GDIt~~--------~-vd~ 97 (265)
-.++..++++++.|+++... . ++. .+.+|.|++||||++ . +++
T Consensus 19 i~l~d~~~~~v~a~~~~~~~--------------~-------------~~~-~~~~i~i~~GDIt~l~~~~~~~~~~~~~ 70 (284)
T 1njr_A 19 IILCDTNEVVTNLWQESIPH--------------A-------------YIQ-NDKYLCIHHGHLQSLMDSMRKGDAIHHG 70 (284)
T ss_dssp EEEEESCHHHHHHHHHHCC-----------------------------------CCEEEEESCHHHHHHHHHTTCC----
T ss_pred EEEECCCHHHHHHHHHHhhh--------------h-------------cCC-CCCEEEEEeCCHhhhhhhccccccccCC
Confidence 35888999999999975331 0 011 146899999999999 0 112
Q ss_pred CCcEEEEcCCCCCCCCCChhHHHHHHhC-hHHHHHHhhCCccCCCcccCCCcEEEcCCC----------CCCCceEEEEc
Q 024577 98 SSDAIVNPANERMLGGGGADGAIHRAAG-PELREACCKVPEVRPEVRCPIGEARITPGF----------KLPASHVIHTV 166 (265)
Q Consensus 98 ~~DaIVNaaN~~l~~~~Gvs~aI~~~aG-~~l~~ec~~~~~~~~~~~l~~G~vviT~a~----------~L~~k~IIH~V 166 (265)
++||||||||+.+.++|||++||++++| +.++++|+++++ .+.+++|++++|+++ +|+||||||+|
T Consensus 71 ~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~---~g~~~~G~a~iT~~~~~~~~~~~~~~L~~k~VIHtv 147 (284)
T 1njr_A 71 HSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLG---GRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVP 147 (284)
T ss_dssp CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTT---TSCCCTTCCEEEEGGGGGCC----CCTTEEEEEECC
T ss_pred CccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHh---cCCCCCCeEEEEECCcccccccchhcCCCCEEEEeC
Confidence 3499999999999999999999999975 778999998763 347999999999999 99999999999
Q ss_pred CcccCCCC---------ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCC------
Q 024577 167 GPIYDADS---------NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDF------ 231 (265)
Q Consensus 167 ~P~~~~~~---------~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l------ 231 (265)
||.|..+. ...+.|++||++||++| +++++|||||+||||++|||++++|++|++++++|+...
T Consensus 148 gp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~~~~s~~~ 226 (284)
T 1njr_A 148 TVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKEL 226 (284)
T ss_dssp CBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHhCCccccc
Confidence 99997652 13578999999999999 999999999999999999999999999999999998632
Q ss_pred -CeEEEEeeCcchHHHH
Q 024577 232 -KEVSLPMFLLHITALN 247 (265)
Q Consensus 232 -~~V~~v~~~~~~~~~~ 247 (265)
+.|.||.| +..|..|
T Consensus 227 ~~~vi~~~~-~~~~~~~ 242 (284)
T 1njr_A 227 KNVLIMYYL-QYPFEPF 242 (284)
T ss_dssp HHHHHHHHT-TCCCGGG
T ss_pred ceEEEEEEC-HHHHHHH
Confidence 24666666 5555544
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=100.00 E-value=1.6e-34 Score=277.49 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=139.6
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
-+.+.|++||||+.++ |||||+||+.+.+|+||++|||+++|+++.+ +.+++|++++|+++ .
T Consensus 343 APsfrIIRgDITk~~v----DAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----------~~~~tG~AkIT~g~---a 404 (670)
T 4gua_A 343 APSYRTKRENIADCQE----EAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----------SATETGTARMTVCL---G 404 (670)
T ss_dssp CCCEEEECSCGGGCCS----SEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----------CCCCTTCEEEEEET---T
T ss_pred CcceeEEecccccccc----CEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----------CCCCcceEEEecCC---C
Confidence 5789999999999987 9999999999999999999999999987653 26889999999998 5
Q ss_pred ceEEEEcCcccCCCCCh--HHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCC-CeEEE
Q 024577 160 SHVIHTVGPIYDADSNP--EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDF-KEVSL 236 (265)
Q Consensus 160 k~IIH~V~P~~~~~~~~--~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l-~~V~~ 236 (265)
|||||+|||.|+++... .++|++||+++|++|.+++++|||||+||||+||||++ .++++++++.+|++.. .+|++
T Consensus 405 KyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~I 483 (670)
T 4gua_A 405 KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTI 483 (670)
T ss_dssp EEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEE
T ss_pred ceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999987733 36899999999999999999999999999999999987 5899999999999754 58999
Q ss_pred EeeCcchHHHHHHHHHHH
Q 024577 237 PMFLLHITALNHCMFSFA 254 (265)
Q Consensus 237 v~~~~~~~~~~~~~f~~~ 254 (265)
|+|+++-.+.++......
T Consensus 484 vcfDKkwe~~Ik~ai~~r 501 (670)
T 4gua_A 484 YCLDKKWKERIDAALQLK 501 (670)
T ss_dssp ECSCHHHHHHHHHHHHHH
T ss_pred EEecChHHHHHHHHHHHH
Confidence 999998877777666543
No 20
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.96 E-value=5.2e-29 Score=208.95 Aligned_cols=142 Identities=13% Similarity=0.206 Sum_probs=122.5
Q ss_pred cCCCceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCC
Q 024577 77 LSESAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFK 156 (265)
Q Consensus 77 ~~~~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~ 156 (265)
+.++.+|++++||||+.+ .+|+|||++|+.+.+++||+++|++++|. + .+|++ +.+++|++++|+++
T Consensus 16 ~~~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~GgGVa~ai~~~~p~-~-~e~~~-------~~~~~G~a~it~~~- 82 (160)
T 2jyc_A 16 DPEGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFGG-V-QELLN-------QQKKSGEVAVLKRD- 82 (160)
T ss_dssp CCCSCSEEEEESCSSSSC---SSCEEEEEECTTCCCCSSTHHHHHHHHCC-H-HHHHH-------HCCCTTCEEEEEET-
T ss_pred cCCCceEEEEeCcCCCCC---CCCEEEEccCCcCCCCCcHHHHHHHHChH-H-HHHhc-------cCCCCCcEEEEecC-
Confidence 344779999999999976 13999999999999999999999999955 4 57865 26899999999985
Q ss_pred CCCceEEEEcCcc-cCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Q 024577 157 LPASHVIHTVGPI-YDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVS 235 (265)
Q Consensus 157 L~~k~IIH~V~P~-~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~ 235 (265)
.+||||+++|. |.. ..+.+.|++||+++++.|.+++++|||||.||||++|+|+++++++|.+++.+. .|.
T Consensus 83 --~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~~-----~i~ 154 (160)
T 2jyc_A 83 --GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEAT-----DIK 154 (160)
T ss_dssp --TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTTS-----CCE
T ss_pred --CcEEEEEecCCCCCC-CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhhC-----CCe
Confidence 69999999998 655 346789999999999999999999999999999999999999999988876542 466
Q ss_pred EEee
Q 024577 236 LPMF 239 (265)
Q Consensus 236 ~v~~ 239 (265)
+++|
T Consensus 155 v~Vy 158 (160)
T 2jyc_A 155 ITVY 158 (160)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 21
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.96 E-value=6.6e-29 Score=205.84 Aligned_cols=140 Identities=13% Similarity=0.213 Sum_probs=120.9
Q ss_pred CceEEEEECccceeccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCCC
Q 024577 80 SAALVINKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPA 159 (265)
Q Consensus 80 ~~~I~I~~GDIt~~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~~ 159 (265)
+.+|++++||||+.+ .+|+|||++|+.+.+++||+++|+++++ ++ ++|++ +.+++|++++|+++ +
T Consensus 8 ~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~G~Gva~ai~~~~p-~~-~~~~~-------~~~~~G~a~it~~~---~ 72 (149)
T 2eee_A 8 GSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLN-------QQKKSGEVAVLKRD---G 72 (149)
T ss_dssp SCCCEEECSCSSSSC---SSCEEEEEEETTCCCCSTTHHHHHHHTC-CH-HHHHT-------TCCCTTCEEEEESS---S
T ss_pred CeeEEEEecccccCC---CCcEEEEEeCCCCCcCCcHHHHHHHHCc-HH-HHHhc-------ccCCCccEEEEEcC---C
Confidence 568999999999976 1399999999999999999999999995 45 57764 26899999999985 7
Q ss_pred ceEEEEcCcc-cCCCCChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 024577 160 SHVIHTVGPI-YDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPM 238 (265)
Q Consensus 160 k~IIH~V~P~-~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~ 238 (265)
+||||+++|. |.. ..+.+.|++||+++++.|.+++++|||||.||||++|+|+++++++|.+++.+ ..|.+++
T Consensus 73 ~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~-----~~i~v~V 146 (149)
T 2eee_A 73 RYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA-----TDIKITV 146 (149)
T ss_dssp SEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT-----CCCEEEE
T ss_pred CEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc-----CCceEEE
Confidence 9999999998 755 34678999999999999999999999999999999999999999998777654 2466666
Q ss_pred eC
Q 024577 239 FL 240 (265)
Q Consensus 239 ~~ 240 (265)
|+
T Consensus 147 y~ 148 (149)
T 2eee_A 147 YT 148 (149)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.94 E-value=4.1e-27 Score=196.70 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=114.2
Q ss_pred eEEEEECccce---eccCCCCcEEEEcCCCCCCCCCChhHHHHHHhChHHHHHHhhCCccCCCcccCCCcEEEcCCCCCC
Q 024577 82 ALVINKGDITK---WSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLP 158 (265)
Q Consensus 82 ~I~I~~GDIt~---~~vd~~~DaIVNaaN~~l~~~~Gvs~aI~~~aG~~l~~ec~~~~~~~~~~~l~~G~vviT~a~~L~ 158 (265)
.|++++||||+ .++ |+|||++|+.+.+++||+++|++++ +++.++|++..+. .+.+++|++++|+++ +
T Consensus 5 ~i~~v~GDit~~~~~~~----daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~--~~~~~~G~~~i~~~~--~ 75 (158)
T 2fg1_A 5 EILYIKGDATAPIGSGV----KVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKS--QEEFTLGAVQFVNVE--N 75 (158)
T ss_dssp CCEEEESCTTSCCSSSC----EEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHH--TSSCSTTCEEEEEEE--T
T ss_pred EEEEEecccCCCCCCCC----eEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhh--ccCcCCccEEEEecC--C
Confidence 68899999999 544 9999999999999999999999999 7777776654321 237899999999984 2
Q ss_pred CceEEEEcCcc-cCCCC-C----hHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHH
Q 024577 159 ASHVIHTVGPI-YDADS-N----PEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKE 226 (265)
Q Consensus 159 ~k~IIH~V~P~-~~~~~-~----~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~ 226 (265)
.+||||+++|. |..+. . ..+.|++||+++++.|.+++. |||||.||||++|+|++++++++.+.+.+
T Consensus 76 ~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~~ 148 (158)
T 2fg1_A 76 KLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELIT 148 (158)
T ss_dssp TEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTGG
T ss_pred CeEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhcc
Confidence 49999999998 76433 1 578999999999999999997 99999999999999999999987665543
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=99.05 E-value=4.5e-10 Score=101.24 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=78.9
Q ss_pred EEEEcCcccCCC---C---ChHHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHH---HHhcCCC
Q 024577 162 VIHTVGPIYDAD---S---NPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVK---EFANDFK 232 (265)
Q Consensus 162 IIH~V~P~~~~~---~---~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~---~fl~~l~ 232 (265)
||.++.|+|..- . ...+.|+..++.+|..|.++|+++|+||++|||+||.|++++|+++.+.+. +|...++
T Consensus 172 vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~~~~f~~~f~ 251 (277)
T 3sig_A 172 FLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFA 251 (277)
T ss_dssp EEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHSTTCTTTTTCS
T ss_pred EEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhhcchhcCCce
Confidence 788988977431 1 124779999999999999999999999999999999999999999999998 4667899
Q ss_pred eEEEEeeCc----chHHHHHHHHHH
Q 024577 233 EVSLPMFLL----HITALNHCMFSF 253 (265)
Q Consensus 233 ~V~~v~~~~----~~~~~~~~~f~~ 253 (265)
+|+|.++++ ..+..|++.|..
T Consensus 252 ~VvFAv~d~~~~~~n~~~F~~~F~~ 276 (277)
T 3sig_A 252 HVVFAVWDTAPGAPRHAAFARRFGS 276 (277)
T ss_dssp EEEEECCCCSTTCHHHHHHHHHC--
T ss_pred EEEEEEecCCCcchHHHHHHHHHhh
Confidence 999999987 678899988864
No 24
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=55.82 E-value=27 Score=28.15 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=26.2
Q ss_pred CceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecc
Q 024577 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~ 203 (265)
++.|||++++.|.... ....-.....++++.|.+.+.+.+.+-.
T Consensus 68 ~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~~S 111 (227)
T 3dhn_A 68 ADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLMVG 111 (227)
T ss_dssp CSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5799999998765532 1111234567788888888888777643
No 25
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=47.30 E-value=26 Score=30.01 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN 229 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~ 229 (265)
...+++++..|.+.|++.+.+=++||+++.=|.+++ ..+++-+.+++.
T Consensus 33 ~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 33 AAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVE 80 (227)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHH
Confidence 467888888889999999999999999999999988 444555565553
No 26
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=42.45 E-value=1.1e+02 Score=26.59 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...++.+++.|.+.|++.+.+=++||-++.=|.+++...|
T Consensus 54 ~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm 93 (256)
T 4h8e_A 54 MQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIM 93 (256)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHH
Confidence 3567788888889999999999999999999998887554
No 27
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=42.05 E-value=96 Score=26.50 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 024577 182 NAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFA 228 (265)
Q Consensus 182 ~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl 228 (265)
..++.+++.|.+.|++.+.+=++||.++.=|.+++...| +-+.+++
T Consensus 37 ~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm-~L~~~~l 82 (225)
T 3ugs_B 37 KTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIF-ELLDRCL 82 (225)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHH-HHHHHHH
Confidence 456777888889999999999999999999998887553 3344444
No 28
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=37.88 E-value=85 Score=26.40 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEee
Q 024577 178 ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMF 239 (265)
Q Consensus 178 ~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~ 239 (265)
+.....++.+++.|.+.|.+.|..|..|. ..+.+.++.-+.+.+.+++..+..++|.+.+-
T Consensus 109 ~~~~~~~~~~i~~A~~lG~~~v~~~~~g~-~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lE 169 (290)
T 2zvr_A 109 KKAIERVVKHTEVAGMFGALVIIGLVRGR-REGRSYEETEELFIESMKRLLELTEHAKFVIE 169 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEESGGGCC-CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCC-CCCcCHHHHHHHHHHHHHHHHHHhccCEEEEE
Confidence 45556789999999999999998554222 23456677777777777766543323666653
No 29
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=37.30 E-value=1.4e+02 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...+++++..|.+.|++.+.+=++||.++.=|.+++...|
T Consensus 85 ~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm 124 (284)
T 2vg3_A 85 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 124 (284)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence 3678888889999999999999999999999998876553
No 30
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=36.56 E-value=1.1e+02 Score=26.58 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 180 LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 180 L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
=...++.+++.|.+.|++.+.+=++||.++.=|.+++...|
T Consensus 46 G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm 86 (253)
T 3sgv_B 46 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM 86 (253)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHH
Confidence 34567788888899999999999999999999998886554
No 31
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=34.30 E-value=1.2e+02 Score=25.06 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcC--CCeEEEEee
Q 024577 177 EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAND--FKEVSLPMF 239 (265)
Q Consensus 177 ~~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~--l~~V~~v~~ 239 (265)
.+.....++.+++.|.+.|.+.|.++. | ...+.+.++..+.+.+.+++..+. -..|.+.+-
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~-g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE 150 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMS-G-ITEGLDRKACEETFIENFRYAADKLAPHGITVLVE 150 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCB-C-BCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcc-C-CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 445666789999999999999998842 1 223456677777777766665531 124555553
No 32
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=33.99 E-value=1.4e+02 Score=23.56 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=28.6
Q ss_pred CceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeec
Q 024577 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFT 202 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP 202 (265)
++.|||++++.|.... ...-....+++++.|.+.+ +.+.+.
T Consensus 63 ~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 63 VDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp CSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred CCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 5789999999876533 2233345688888888888 666664
No 33
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=33.65 E-value=1.2e+02 Score=26.03 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVA 220 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~ 220 (265)
...+++++..|.+.|++.+.+=++||.++.=|.+++...|
T Consensus 45 ~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm 84 (245)
T 2d2r_A 45 VKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM 84 (245)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEECC----------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence 4678888889999999999999999999999987766553
No 34
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=30.60 E-value=1.2e+02 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAA 217 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa 217 (265)
...+++++..|.+.|++.+.+=++||.++.=|.+++.
T Consensus 50 ~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~ 86 (249)
T 1f75_A 50 MQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVN 86 (249)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEC------------C
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHH
Confidence 4678888888999999999999999999999988764
No 35
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=28.76 E-value=2.3e+02 Score=24.98 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCceee--ee-cccccCCCCCCHHHHHHHHHHHHHHHhcC
Q 024577 176 PEASLRNAYKNSLSVAKENNIQYI--AF-TAISCGVYGYPYEEAAAVALSTVKEFAND 230 (265)
Q Consensus 176 ~~~~L~~~y~~~L~~A~~~~i~SI--Af-P~IgtG~~g~P~~~aa~i~l~ai~~fl~~ 230 (265)
..+.++...+.+++.+.+.|+..+ -| |-..+ ..|++.+...+.++++++++.+.
T Consensus 72 t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~-~~gl~~~~~v~~v~~~~~~a~~~ 128 (326)
T 3pao_A 72 TEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHT-DRGIPFEVVLAGIRAALRDGEKL 128 (326)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHH-TTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhc-cCCCCHHHHHHHHHHHHHHHHhh
Confidence 457889999999999988888764 23 65555 46789999999999999887653
No 36
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=27.92 E-value=2e+02 Score=24.80 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHH
Q 024577 181 RNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAV 219 (265)
Q Consensus 181 ~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i 219 (265)
...+++++..|.+.|++.+.+=++||.++.=|.+++...
T Consensus 47 ~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L 85 (253)
T 3qas_B 47 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL 85 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence 467888888999999999999999999999998887544
No 37
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=26.29 E-value=2.2e+02 Score=24.01 Aligned_cols=62 Identities=6% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeeCc
Q 024577 178 ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFLL 241 (265)
Q Consensus 178 ~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~~~ 241 (265)
+.-...++.+++.|.+.|.+.|.+.. |. ..+-+.+++-+.+++.+++..+....|.+++=+-
T Consensus 90 ~~~~~~~~~~i~~A~~lGa~~vv~h~-g~-~~~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~ 151 (303)
T 3aal_A 90 SLGVDFLRAEIERTEAIGAKQLVLHP-GA-HVGAGVEAGLRQIIRGLNEVLTREQNVQIALETM 151 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECC-EE-CTTSCHHHHHHHHHHHHHHHCCSSCSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECC-Cc-CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 34456678889999999999997732 11 1233677888888888887764335576666443
No 38
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=25.89 E-value=2.6e+02 Score=22.91 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeeC
Q 024577 178 ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFANDFKEVSLPMFL 240 (265)
Q Consensus 178 ~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~~l~~V~~v~~~ 240 (265)
+.....++.+++.|.+.|.+.|.+.. |.. .+.+.+++-+.+.+.+++.......|.+.+-+
T Consensus 85 ~~~~~~~~~~i~~A~~lG~~~v~~~~-g~~-~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn 145 (287)
T 2x7v_A 85 QKSVELLKKEVEICRKLGIRYLNIHP-GSH-LGTGEEEGIDRIVRGLNEVLNNTEGVVILLEN 145 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECC-EEC-TTSCHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEec-CCC-CCCCHHHHHHHHHHHHHHHHcccCCCEEEEeC
Confidence 34456788999999999999998732 111 23467777778888888776543456666644
No 39
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=21.84 E-value=29 Score=18.42 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=6.8
Q ss_pred HHHHHhhc
Q 024577 4 RRLIRFLL 11 (265)
Q Consensus 4 ~~~~~~~~ 11 (265)
.+|+||||
T Consensus 6 hqllryll 13 (21)
T 3dct_B 6 HQLLRYLL 13 (26)
T ss_pred HHHHHHHH
Confidence 47999999
No 40
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.25 E-value=15 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=30.4
Q ss_pred CCCCCCccccCCCCCccceecchhhHHHHhhhccc
Q 024577 12 PATQLPQATNSSTFPKSRTSVSDNSLATRAKAKTI 46 (265)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 46 (265)
|-..+|..+++|-|+..=..+|.|.|..|+.++..
T Consensus 8 p~~~lP~~VD~eVF~~LP~dIQ~Ells~~~~e~~~ 42 (48)
T 2kwv_A 8 PLQALPEGVDQEVFKQLPADIQEEILSGKSRENLK 42 (48)
T ss_dssp CTTSSCTTCCGGGTTTSCHHHHHHHTTCCCSCCCC
T ss_pred ccccCCCCCCHHHHHHCcHHHHHHHHhcchHHhhc
Confidence 56689999999999999999999999999876543
No 41
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=21.04 E-value=89 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=27.3
Q ss_pred CceEEEEcCcccCCCCChHHHHHHHHHHHHHHHHHcCceeeeecc
Q 024577 159 ASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTA 203 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~ 203 (265)
++.|||++++..... ..-....+++++.|.+.+...+.+..
T Consensus 62 ~d~vi~~ag~~~~~~----~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 62 QNVVVDAYGISPDEA----EKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp CSEEEECCCSSTTTT----TSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred CCEEEECCcCCcccc----chHHHHHHHHHHHHHhcCCceEEEEe
Confidence 578999998854321 12334567788888777777777653
No 42
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=20.22 E-value=3.1e+02 Score=22.17 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHcCceeeeecccccCCCCCCHHHHHHHHHHHHHHHhc
Q 024577 178 ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVKEFAN 229 (265)
Q Consensus 178 ~~L~~~y~~~L~~A~~~~i~SIAfP~IgtG~~g~P~~~aa~i~l~ai~~fl~ 229 (265)
+.....++.+++.|.+.|.+.|.++.=.......+.++.-+.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~ 130 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLP 130 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999887411111234666666666666665543
No 43
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=20.14 E-value=1.9e+02 Score=24.57 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=26.7
Q ss_pred CceEEEEcCcccCCCCChHH-HH---HHHHHHHHHHHHHcC-ceeeeecc
Q 024577 159 ASHVIHTVGPIYDADSNPEA-SL---RNAYKNSLSVAKENN-IQYIAFTA 203 (265)
Q Consensus 159 ~k~IIH~V~P~~~~~~~~~~-~L---~~~y~~~L~~A~~~~-i~SIAfP~ 203 (265)
++.|||+++|.-........ .+ -....++++.|.+.+ .+.|.+..
T Consensus 78 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S 127 (337)
T 2c29_D 78 CTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS 127 (337)
T ss_dssp CSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence 57899999875211112221 22 244577888887766 77777654
Done!