BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024578
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 11 NYECLLFDLDDTLYPLSTGFNLACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTMAG 70
N + FD+D+ LY ST + +++I F HL + + + Y+E+G + G
Sbjct: 56 NLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRG 115
Query: 71 LKAVGYEFDNDEFHAFVHGKLPYEK-LKPDPVLRNLLLSMPQ-----RKIIFTNADQKHA 124
L + ++ + E++ V LP + LKPD LRN+LL + Q + +FTNA + HA
Sbjct: 116 L-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHA 174
Query: 125 MEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKPSLEAIETAIR 184
+ L LG+ D F DG+ +S ++CKP ++A E A++
Sbjct: 175 IRCLRLLGIADLF-------------------DGLTYCDYSRTDTLVCKPHVKAFEKAMK 215
Query: 185 IANVDPKKTIFF-DDSARNIASAKAAGLHTVI 215
+ + + +F DDS +NI + G+ T I
Sbjct: 216 ESGLARYENAYFIDDSGKNIETGIKLGMKTCI 247
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 11 NYECLLFDLDDTLYPLSTGFNLACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTMAG 70
N + FD+D+ LY ST + +++I F HL + + + Y+E+G + G
Sbjct: 29 NLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRG 88
Query: 71 LKAVGYEFDNDEFHAFVHGKLPYEK-LKPDPVLRNLLLSMPQ-----RKIIFTNADQKHA 124
L + ++ + E++ V LP + LKPD LRN+LL + Q + +FTNA + HA
Sbjct: 89 L-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHA 147
Query: 125 MEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKPSLEAIETAIR 184
+ L LG+ D F DG+ +S ++CKP ++A E A++
Sbjct: 148 IRCLRLLGIADLF-------------------DGLTYCDYSRTDTLVCKPHVKAFEKAMK 188
Query: 185 IANVDPKKTIFF-DDSARNIASAKAAGLHTVI 215
+ + + +F DDS +NI + G+ T I
Sbjct: 189 ESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 11 NYECLLFDLDDTLYPLSTGFNLACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTMAG 70
N + F +D+ LY ST + +++I F HL + + + Y+E+G + G
Sbjct: 29 NLKVFFFAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRG 88
Query: 71 LKAVGYEFDNDEFHAFVHGKLPYEK-LKPDPVLRNLLLSMPQ-----RKIIFTNADQKHA 124
L + ++ + E++ V LP + LKPD LRN+LL + Q + +FTNA + HA
Sbjct: 89 L-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHA 147
Query: 125 MEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKPSLEAIETAIR 184
+ L LG+ D F DG+ +S ++CKP ++A E A++
Sbjct: 148 IRCLRLLGIADLF-------------------DGLTYCDYSRTDTLVCKPHVKAFEKAMK 188
Query: 185 IANVDPKKTIFF-DDSARNIASAKAAGLHTVI 215
+ + + +F DDS +NI + G+ T I
Sbjct: 189 ESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 40/211 (18%)
Query: 13 ECLLFDLDDTLYPLSTGFNLACRRNIEEF---MSQHLHIDESEVPRMCLELYREHGTTMA 69
E ++FD D L + A RR E + ++ LH VP RE +
Sbjct: 2 EAVIFDXDGVLXDTEPLYFEAYRRVAESYGKPYTEDLHRRIXGVPE------REGLPILX 55
Query: 70 GLKAVGYEFDNDEFHAFVH---GKLPYEKLKPDPVLRNLLLSMPQRKI---IFTNADQKH 123
+ +N F VH ++ E LK +P +R L + ++I + T+ Q+
Sbjct: 56 EALEIKDSLEN--FKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQRE 113
Query: 124 AMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKPSLEAIETAI 183
A+E L RL LE F+ + F D ++N KP E +
Sbjct: 114 ALERLRRLDLEKYFD-VXVF------------GDQVKNG----------KPDPEIYLLVL 150
Query: 184 RIANVDPKKTIFFDDSARNIASAKAAGLHTV 214
NV P+K + F+DS + +AK+AG+ +
Sbjct: 151 ERLNVVPEKVVVFEDSKSGVEAAKSAGIERI 181
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 13 ECLLFDLDDTLYPLSTGFNLACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTMAGLK 72
+ + FDLDDTL S +A + IE + L +D +EL +E+G+
Sbjct: 3 KVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFP--- 59
Query: 73 AVGYEFD----------NDEF-----HAFVHGKLPYEKLKPDPVLRNLLLSMPQRKI--- 114
Y FD N ++ A+ + K Y L+ P R +L+ + +
Sbjct: 60 ---YHFDYLLRRLDLPYNPKWISAGVIAYHNTKFAY--LREVPGARKVLIRLKELGYELG 114
Query: 115 IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKP 174
I T+ + E + RL L+D FE +I + +G++ KP
Sbjct: 115 IITDGNPVKQWEKILRLELDDFFEHVII-----------SDFEGVK------------KP 151
Query: 175 SLEAIETAIRIANVDPKKTIFFDDS-ARNIASAKAAGLHTV 214
+ + A++ NV P++ + D +I AK G+ TV
Sbjct: 152 HPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTV 192
>pdb|2I6X|A Chain A, The Structure Of A Predicted Had-like Family Hydrolase
From Porphyromonas Gingivalis
Length = 211
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 147 NPRLQPADNT-DGIENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIAS 205
+PR P+ T D + ++S Q KP+ + I + P++T+F DD N+A+
Sbjct: 123 SPRFLPSGRTLDSFFDKVYASCQXGKYKPNEDIFLEXIADSGXKPEETLFIDDGPANVAT 182
Query: 206 AKAAGLHT 213
A+ G HT
Sbjct: 183 AERLGFHT 190
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 173 KPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVP 223
KP + ++ P T+FFDD+A NI A G+ +++V +P
Sbjct: 148 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTIP 198
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 162 NSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHT 213
++ S + + KP E + A +DPK+T F DDS N A+ G+ T
Sbjct: 162 KTYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 162 NSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHT 213
++ S + + KP E + A +DPK+T F DDS N A+ G+ T
Sbjct: 162 KTYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIST 213
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
Length = 602
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 40 EFMSQHLHIDESEVPRMCLELYREHGTTMA---GLKAVGYEFDNDEFHAFVHGKLPYEKL 96
E M ++ ID+ E+ M + R+HGT A G + G F +E + LP+
Sbjct: 453 EHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP-- 510
Query: 97 KPDPVLRNLL 106
+PD + R+L
Sbjct: 511 RPDAINRSLF 520
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 40 EFMSQHLHIDESEVPRMCLELYREHGTTMA---GLKAVGYEFDNDEFHAFVHGKLPYEKL 96
E M ++ ID+ E+ M + R+HGT A G + G F +E + LP+
Sbjct: 471 EHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP-- 528
Query: 97 KPDPVLRNLL 106
+PD + R+L
Sbjct: 529 RPDAINRSLF 538
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 164 FSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTV 214
F+S+ + KP+ + +A V P++ + DD +N+ +A+A G H V
Sbjct: 132 FTSSALGVXKPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|1SGO|A Chain A, Nmr Structure Of The Human C14orf129 Gene Product,
Hspc210. Northeast Structural Genomics Target Hr969
Length = 139
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 19 LDDTLYPLSTGF---NLACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTMAGLKAVG 75
++D L+ ++ F +L C ++ +++++ E R CLEL T AGLK VG
Sbjct: 41 VNDVLFAVNNMFVSKSLRCADDV-----AYINVETKERNRYCLEL------TEAGLKVVG 89
Query: 76 YEFDNDEFH 84
Y FD + H
Sbjct: 90 YAFDQVDDH 98
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 100 PVLRNLLLSMPQRKI-IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDG 158
P + +LL+ + I I ++ K+A+ VL LG+ D F+ I AD
Sbjct: 119 PGIESLLIDVKSNNIKIGLSSASKNAINVLNHLGISDKFDFI------------AD-AGK 165
Query: 159 IENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGS 218
+NN KP E + + NV+P+ I +D++ I + +A + +V VG+
Sbjct: 166 CKNN----------KPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGN 215
Query: 219 SVPVPPADHALNSIHNIK-EAIPEIW 243
+ A+ ++S + +K E I E +
Sbjct: 216 YENLKKANLVVDSTNQLKFEYIQEKY 241
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 173 KPSLEAIETAIRIANVDPKKTIFF-DDSARNIASAKAAGLHTVIVGSS 219
KPS E + A+ N++P K +FF DS +I SA AG + GS+
Sbjct: 159 KPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAGCLPIKYGST 206
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 34/151 (22%)
Query: 39 EEFMSQHLHIDESEVPRMCLELYREHGTTMAGLKAVGYEFDNDEFHAFVHGKLPYEKLKP 98
EF D S P E HGT MA L A Y + + H + ++ P
Sbjct: 64 SEFAKFSFTQDGSPFPVKKSEALYIHGTAMASLIASRYGI----YGVYPHALISSRRVIP 119
Query: 99 DPV-----------LRNLLLSMPQRKIIFTNADQKHA------MEVLGRLGLEDCFEGII 141
D V + N+ L+ + KII + QK E+L R+G
Sbjct: 120 DGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRN------- 172
Query: 142 CFETINPRL-QPADNTDGIENNSFSSNQRIL 171
N RL A DG + S+ QRI
Sbjct: 173 -----NDRLIVAAVGNDGADIRKLSAQQRIW 198
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 95 KLKPD---PVLRNLLLSMPQRKI-IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRL 150
KL P+ P + LL + I I + ++A ++L RL + D F I+
Sbjct: 87 KLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNAPKILRRLAIIDDFHAIV--------- 137
Query: 151 QPADNTDGIENNSFSSNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAG 210
P G KP + TA +V P +D+ I++ K+AG
Sbjct: 138 DPTTLAKG--------------KPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAG 183
Query: 211 LHTVIVGSSVPVPPADHALNSIHNIK-EAIPEIWE 244
V VG P AD + ++ E + E WE
Sbjct: 184 XFAVGVGQGQPXLGADLVVRQTSDLTLELLHEEWE 218
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 19 LDDTLYPLSTGFNLACRRNIEEFMSQHLHIDESEVPRMCLE---LYR 62
LD+T+Y + GFN+A + EF Q+ +++ + LE +YR
Sbjct: 386 LDNTIYTQNEGFNIASKNLKTEFNGQNKAVNKEAYEEISLEHLVIYR 432
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 166 SNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIV 216
S Q + KP + + + P + +F DD N+ A+ G+ T++V
Sbjct: 153 SCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILV 203
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 115 IFTNADQKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKP 174
+ T++D + AM L LG++D F+ I +S + KP
Sbjct: 120 MITDSDTEQAMAFLDALGIKDLFDSIT-----------------------TSEEAGFFKP 156
Query: 175 SLEAIETAIRIANVDPKKTIFF-DDSARNIASAKAAGLHTVIV 216
E A++ A V ++ ++ D+ ++ +K G+ ++++
Sbjct: 157 HPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILL 199
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 240 PEIWEGEGEQLEQVIQPAAVETAVL 264
P +W G GE E ++Q AAV L
Sbjct: 189 PRLWAGTGEMTETIMQGAAVSDIAL 213
>pdb|3VYR|B Chain B, Crystal Structure Of The Hypc-Hypd Complex
pdb|3VYS|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I)
pdb|3VYT|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form I
Inward)
pdb|3VYU|B Chain B, Crystal Structure Of The Hypc-Hypd-Hype Complex (Form Ii)
Length = 372
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 184 RIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVPPADHALNSIHNIKEAIPEIW 243
RIA +P KT+ +A AAG+ V + + + S+H + E+
Sbjct: 132 RIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEEL----ENFKIYSVHRLTPPAVEVL 187
Query: 244 EGEGEQLEQVIQPAAVETAV 263
+G + +I P V T +
Sbjct: 188 LKQGTVFQGLIAPGHVSTII 207
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 81 DEFHAFVHGKLPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLGRLGLE 134
DE + HG +P +L DP L +M +R D+ H ++ LG E
Sbjct: 411 DEANIVTHGMVPMNRLTDDP---RWLPAMSERVTRMVQRDRNHPSVIIWSLGNE 461
>pdb|2Z1D|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
pdb|2Z1D|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation
Protein, Hypd From Thermococcus Kodakaraensis
Length = 372
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 184 RIANVDPKKTIFFDDSARNIASAKAAGLHTVIVGSSVPVPPADHALNSIHNIKEAIPEIW 243
RIA +P KT+ +A AAG+ V + + + S+H + E+
Sbjct: 132 RIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEEL----ENFKIYSVHRLTPPAVEVL 187
Query: 244 EGEGEQLEQVIQPAAVETAV 263
+G + +I P V T +
Sbjct: 188 LKQGTVFQGLIAPGHVSTII 207
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 81 DEFHAFVHGKLPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLGRLGLE 134
DE + HG +P +L DP L +M +R D+ H ++ LG E
Sbjct: 440 DEANIETHGMVPMNRLTDDP---RWLPAMSERVTRMVQRDRNHPSVIIWSLGTE 490
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 81 DEFHAFVHGKLPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLGRLGLE 134
DE + HG +P +L DP L +M +R D+ H ++ LG E
Sbjct: 411 DEANIETHGMVPMNRLTDDP---RWLPAMSERVTRMVQRDRNHPSVIIWSLGTE 461
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 166 SNQRILCKPSLEAIETAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVIV 216
S Q + KP + + P + +F DD N+ A+ G+ T++V
Sbjct: 153 SCQVGMIKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILV 203
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 51/215 (23%)
Query: 14 CLLFDLDDTLYPLSTGFNLACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTM---AG 70
+LFDLD TL + LA + ++E + LE Y T G
Sbjct: 3 VILFDLDGTLIDSAKDIALALEKTLKE---------------LGLEEYYPDNVTKYIGGG 47
Query: 71 LKAVGYEFDNDEFHA---------FVHGKLPYEKLKPD-PVLRNLLLSMPQRKIIFTNAD 120
++A+ + D+F ++ + Y K P+ P L S + + +N
Sbjct: 48 VRALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKL 107
Query: 121 QKHAMEVLGRLGLEDCFEGIICFETINPRLQPADNTDGIENNSFSSNQRILCKPSLEAIE 180
++ + ++L L L F+ I+ +T + KPS +
Sbjct: 108 EELSKKILDILNLSGYFDLIVGGDTFGEK-----------------------KPSPTPVL 144
Query: 181 TAIRIANVDPKKTIFFDDSARNIASAKAAGLHTVI 215
+ I +P+K + D+ +I + K AG T +
Sbjct: 145 KTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179
>pdb|1YXO|A Chain A, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein Pdxa Pa0593
pdb|1YXO|B Chain B, Crystal Structure Of Pyridoxal Phosphate Biosynthetic
Protein Pdxa Pa0593
Length = 328
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 32 LACRRNIEEFMSQHLHIDESEVPRMCLELYREHGTTMAGLKAVGYEFDN------DEFHA 85
L C N HL +E EV CLE R G + G F D A
Sbjct: 203 LVCGLNPHAGEGGHLGREEIEVIEPCLERLRGEGLDLIGPLPADTLFTPKHLEHCDAVLA 262
Query: 86 FVHGK-LPYEKLKPDPVLRNLLLSMPQRKIIFTNADQKHAMEVLG 129
H + LP K K N+ L +P II T+ D A+++ G
Sbjct: 263 XYHDQGLPVLKYKGFGAAVNVTLGLP---IIRTSVDHGTALDLAG 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,912,522
Number of Sequences: 62578
Number of extensions: 321774
Number of successful extensions: 852
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 38
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)