BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024579
(265 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/265 (93%), Positives = 258/265 (97%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+QSNE VRKVG G R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGE+VWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/265 (94%), Positives = 258/265 (97%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+ SNE VRKVG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKPSNELVRKVGSVGGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEIL+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/265 (93%), Positives = 258/265 (97%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+QSNE VRKVG + GRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVRKVGSSGDGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGE+VWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAI+TGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIITGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLLDHLADPVANNAWAYATNFVPGK 265
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/265 (93%), Positives = 255/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQ+SAFAGQTAL+Q NE VRKVG GGRITMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQRSAFAGQTALKQPNELVRKVGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLVDHLADPVANNAWAYATNFVPGK 265
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/265 (93%), Positives = 256/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+QSNE +RK+G GGRITMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELIRKIGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKN ELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDP+ FAELKVKELKNGRLAM SMFGFFVQAIVTGKGP+E
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFFVQAIVTGKGPVE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGK 265
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/265 (92%), Positives = 256/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+QSNE V K+G GGR++MRRTVKSAP SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPGK 265
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/265 (92%), Positives = 256/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SAIQQSAFAGQTAL+Q N+ VRKVG GGR+TMRRTVKSAPQSIWYGPDRPK+LGP
Sbjct: 1 MAASAIQQSAFAGQTALKQPNDLVRKVGSFGGGRVTMRRTVKSAPQSIWYGPDRPKFLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGE+VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLLDHLADPVANNAWAYATNFVPGK 265
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/265 (92%), Positives = 255/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SAIQQSAFAGQTAL+Q N+ VRKVG GGR+TMRRTVKSAPQSIWYGPDRPK+LGP
Sbjct: 1 MAASAIQQSAFAGQTALKQPNDLVRKVGSFGGGRVTMRRTVKSAPQSIWYGPDRPKFLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGE+VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLA FSMFGFFVQAIVTGKGP+E
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLATFSMFGFFVQAIVTGKGPVE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLLDHLADPVANNAWAYATNFVPGK 265
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/265 (92%), Positives = 253/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+Q NE VRK G A GR TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQLNELVRKTGGAGKGRTTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEIL K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/265 (91%), Positives = 256/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQS+FAGQTAL+ SNE +RKVGV+ GGR+TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILSK
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAW+YATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGK 265
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/265 (92%), Positives = 254/265 (95%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF GQTAL+ +E VRKVGV GGR++MRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATSAIQQSAFTGQTALKNRDELVRKVGVV-GGRVSMRRTVKSAPQSIWYGADRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF+EGYRIGGGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADP NNAWAYATNFVPGK
Sbjct: 240 NLYDHLADPATNNAWAYATNFVPGK 264
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/265 (91%), Positives = 256/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQ+SAFAGQTAL+ NE VRK+G GGRITMRRTV+SAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQRSAFAGQTALKPQNELVRKIGSLGGGRITMRRTVRSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL++
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAR 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLYDHLADPVANNAWAYATNFVPGK 265
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/265 (92%), Positives = 252/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF GQTAL+Q NEFVRK G A GR MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEIL K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 255/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQS+FAGQTAL+ SNE +RKVGV+ GGR+TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILSK
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAW+YATNFVPG
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGN 265
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/265 (92%), Positives = 252/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+Q NE VRK G A GR MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQLNELVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEIL K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 255/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
M TSAIQQS+FAGQTAL+ SNE +RKVGV+ GGR+TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MGTSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILSK
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAW+YATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGK 265
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/265 (92%), Positives = 254/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+ NE VRKVG GG ITMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKPQNELVRKVGSFGGGHITMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LG GLD +YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGWGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLYDHLADPVANNAWAYATNFVPGK 265
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/265 (90%), Positives = 255/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQS+FAGQTAL+ SN+ +RK GV+ GGR+TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSSFAGQTALKPSNDLLRKAGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILSK
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAW+YATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGK 265
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/265 (91%), Positives = 250/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQ SAFAGQT L+Q NE VRKVG R TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQHSAFAGQTVLKQQNELVRKVGSFGSSRTTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL+K
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD LYPGGAFDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 181 LGEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLYDHLADPVANNAWAYATNFVPGK 265
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 252/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQ SAFAGQT+L+Q NE VRKVG GGR TMRRTVKS PQSIWYG DRPKYLGP
Sbjct: 1 MATSAIQSSAFAGQTSLKQQNELVRKVGNFSGGRATMRRTVKSTPQSIWYGADRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 181 LGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPGK 265
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/265 (91%), Positives = 252/265 (95%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATS IQQSAF GQT L+Q NE VRKVG +GGR +MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSTIQQSAFVGQTLLKQQNELVRKVG-GNGGRFSMRRTVKSAPQSIWYGPDRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIF EGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+GGGP
Sbjct: 120 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 180 LGEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAWAYATNFVPGK
Sbjct: 240 NLSDHLADPVANNAWAYATNFVPGK 264
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/265 (91%), Positives = 253/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+ NEF+RK+G +GGR+TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKSQNEFIRKIGSFEGGRVTMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+N ELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DHIADPVANNAWAYATNFVPGK
Sbjct: 241 NLSDHIADPVANNAWAYATNFVPGK 265
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/265 (91%), Positives = 252/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+ NE VRK+G GGR TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWA+ATNFVPGK
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPGK 265
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/265 (90%), Positives = 255/265 (96%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQS+FAGQTAL+ S++ ++KVGV GGR+TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILSK
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAW+YATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGK 265
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/265 (90%), Positives = 253/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAI+QSAFAGQTAL+ NE VRK+G +GGR TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLMG +EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/265 (90%), Positives = 250/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF G+T L+Q NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEIL K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP++
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/266 (90%), Positives = 254/266 (95%), Gaps = 1/266 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGG-RITMRRTVKSAPQSIWYGPDRPKYLG 59
MATSAIQ S+FAGQTAL+ SN+ +RKVG ++GG R+ MRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MATSAIQHSSFAGQTALKPSNDLIRKVGASNGGGRVVMRRTVKSTPQSIWYGPDRPKYLG 60
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILS
Sbjct: 61 PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF+EGYRIGGG
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMF MFGFFVQAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFPMFGFFVQAIVTGKGPI 240
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DHIADPVANNAWAYATNFVPGK
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPGK 266
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/266 (90%), Positives = 254/266 (95%), Gaps = 1/266 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGG-RITMRRTVKSAPQSIWYGPDRPKYLG 59
MATSAIQ S+FAGQT L+ SN+ +RK+G ++GG RI MRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLG 60
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILS
Sbjct: 61 PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF+EGYRIGGG
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DHIADPVANNAWAYATNFVPGK
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPGK 266
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/265 (91%), Positives = 252/265 (95%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSA+QQSAFAGQTAL+Q NE VR+VG + G R MRRT S P+SIWYGPDRPKYLGP
Sbjct: 1 MATSALQQSAFAGQTALKQQNELVRRVGSSRG-RFFMRRTTASTPKSIWYGPDRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEIL+K
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 180 LGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 240 NLYDHLADPVANNAWAYATNFVPGK 264
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 250/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF GQTAL+Q NE +RK G GR TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEIL +
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPGQ 265
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/265 (90%), Positives = 251/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAG AL+ NE V+K G GGR TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGSAALKPQNELVKKTGSFTGGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH++DPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHLSDPVANNAWAYATNFVPGK 265
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/265 (90%), Positives = 250/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF G+T L+Q NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEIL K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA +VVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATRVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP++
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 253/265 (95%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSA+QQSA AG+TAL+Q NE V+KVGV GGRI+M RTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSALQQSALAGRTALKQQNELVKKVGVF-GGRISMHRTVKSTPQSIWYGPDRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF+EGYR+GGGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 180 LGEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+AD ANNAWAYATNFVPGK
Sbjct: 240 NLFDHLADLAANNAWAYATNFVPGK 264
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 252/265 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MAT+A QQSAFAGQTAL+Q NEFVRK G + GR MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATTAFQQSAFAGQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS+Q PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALG VFPEIL K
Sbjct: 61 FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFS+FGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/265 (90%), Positives = 249/265 (93%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF G+T L+Q NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEIL K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVT KGP++
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTDKGPVQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGQ 265
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/266 (89%), Positives = 254/266 (95%), Gaps = 1/266 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGG-RITMRRTVKSAPQSIWYGPDRPKYLG 59
MATSAIQ S+F GQTAL+ SN+ +RKVG ++GG R+ MRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MATSAIQYSSFTGQTALKPSNDLLRKVGASNGGGRVIMRRTVKSTPQSIWYGPDRPKYLG 60
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILS
Sbjct: 61 PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAG+QIFSEGGLDYLG+PNLIHAQSILAIWACQVVLMGF+EGYRIGGG
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DHIADPVANNAWAYATNFVPGK
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPGK 266
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/265 (89%), Positives = 250/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF G+T LRQ NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKAGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPGQ 265
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/265 (89%), Positives = 250/265 (94%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF G+T LRQ NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L K
Sbjct: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPGQ 265
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 248/265 (93%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF GQT + NE VRK+G GGR TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATSAIQQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMG +EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+D I DPVANNAWA+ATNFVPGK
Sbjct: 241 NLFDQINDPVANNAWAFATNFVPGK 265
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/266 (89%), Positives = 253/266 (95%), Gaps = 1/266 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGG-RITMRRTVKSAPQSIWYGPDRPKYLG 59
MATSAIQ S+FAGQTAL+ SN+ +RKVG ++GG R+ MRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MATSAIQHSSFAGQTALKPSNDLLRKVGASNGGGRVVMRRTVKSTPQSIWYGPDRPKYLG 60
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILS
Sbjct: 61 PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYRIGGG
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRIGGG 180
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DH+ADPVANNAW+YATNFVPGK
Sbjct: 241 ENLFDHLADPVANNAWSYATNFVPGK 266
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/265 (89%), Positives = 253/265 (95%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGP
Sbjct: 1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR+GGGP
Sbjct: 120 NGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 180 LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DHIADPVANNAWA+ATNFVPGK
Sbjct: 240 NLADHIADPVANNAWAFATNFVPGK 264
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/265 (90%), Positives = 248/265 (93%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MAT AIQQSAF GQ + NEF+RKVG GRITMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DHI DPVANNAWAYATNFVPGK
Sbjct: 241 NLSDHINDPVANNAWAYATNFVPGK 265
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/265 (89%), Positives = 254/265 (95%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SAIQ+SA AGQ LRQ +E VRKVGV+DG R++MRRTVK+APQSIWYGPDRPK+LGP
Sbjct: 1 MAASAIQKSALAGQRGLRQRDELVRKVGVSDG-RVSMRRTVKAAPQSIWYGPDRPKFLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH+RWAMLGALGC+FPE+LSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYR+GGGP
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFIEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAW+YATNFVPG
Sbjct: 240 NLSDHLADPVANNAWSYATNFVPGN 264
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 250/265 (94%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATS IQQSAFAGQT L+ NE VRK G +GGR +MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSTIQQSAFAGQTILKPQNELVRKFG-GNGGRASMRRTVKSAPQSIWYGPDRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIF EGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GGGP
Sbjct: 120 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD LYPGGAFDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 180 LGEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPVANNAWA+ATNFVPGK
Sbjct: 240 NLSDHLADPVANNAWAFATNFVPGK 264
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/265 (90%), Positives = 250/265 (94%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA S IQ SA AGQTAL+ NE VRKVG +GGR MRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASGIQFSAIAGQTALKPQNELVRKVG-GNGGRFFMRRTVKSAPQSIWYGPDRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+LSK
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGV+FGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 120 NGVQFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE LD LYPGGAFDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEDLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DHIADPVANNAWAYATNFVPGK
Sbjct: 240 NLVDHIADPVANNAWAYATNFVPGK 264
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/263 (90%), Positives = 245/263 (93%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAF GQ + NEFVRKVG RITMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1 MATSAIQQSAFVGQAVGKSQNEFVRKVGSCGESRITMRRTVKSAPQSIWYGEDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSY TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVP 263
NL DHI DPVANNAWAYATNFVP
Sbjct: 241 NLSDHINDPVANNAWAYATNFVP 263
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/265 (90%), Positives = 248/265 (93%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MAT+A+Q S+FAGQT+L SNEF+RKVG GRITMRRTVKS P SIWYGPDRPKYLGP
Sbjct: 1 MATTALQHSSFAGQTSLNLSNEFIRKVGSFGEGRITMRRTVKSVPASIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYRIGGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDPLYPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIV GKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVPGKGPIE 240
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL D +A PVANNAWAYA NFVPGK
Sbjct: 241 NLSDPLAAPVANNAWAYAPNFVPGK 265
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/267 (89%), Positives = 252/267 (94%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR Q NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSE TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPE+L
Sbjct: 60 GPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+GG
Sbjct: 120 AKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 240 IENLYDHLADPVANNAWAYATNFVPGK 266
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/267 (89%), Positives = 250/267 (93%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 240 IENLFDHLADPTANNAWAYATNFVPGK 266
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/267 (88%), Positives = 249/267 (93%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 240 IENLFDHLADPTANNAWAYATNFVPGK 266
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/265 (89%), Positives = 250/265 (94%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 239 NLFDHVADPVANNAWAYATNFVPGK 263
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/267 (88%), Positives = 249/267 (93%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+ AP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRIAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 240 IENLFDHLADPTANNAWAYATNFVPGK 266
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/267 (89%), Positives = 249/267 (93%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR Q NE V KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQISSLAGQTLLRPQQNELVSKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP NNAWAYATNFVPGK
Sbjct: 240 IENLFDHLADPANNNAWAYATNFVPGK 266
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/267 (88%), Positives = 249/267 (93%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QV LMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVGLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 240 IENLFDHLADPTANNAWAYATNFVPGK 266
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 249/265 (93%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YP GAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 179 LGEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 239 NLFDHVADPVANNAWAYATNFVPGK 263
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/267 (89%), Positives = 248/267 (92%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR Q NE V KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQISSLAGQTLLRPQQNELVSKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP NNAWAYATNFVPGK
Sbjct: 240 IENLFDHLADPANNNAWAYATNFVPGK 266
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 247/265 (93%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+QQ+ TA R+ +E VR+VG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALQQTTSFLGTAPRR-DELVRRVGDF-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKELKN RLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNSRLAMFSMFGFFVQAIVTGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 NLADHVADPVNNNAWAYATNFVPGK 263
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/265 (88%), Positives = 248/265 (93%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ ++ VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DDLVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE+IHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIV GKGPIE
Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVRGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ DPVANNAWAYATNFVPGK
Sbjct: 239 NLFDHVTDPVANNAWAYATNFVPGK 263
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/265 (88%), Positives = 249/265 (93%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ ++ VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DDVVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELE+IHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ DPVANNAW+YATNFVPGK
Sbjct: 239 NLFDHVTDPVANNAWSYATNFVPGK 263
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/267 (87%), Positives = 247/267 (92%), Gaps = 3/267 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR Q NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLMG +EGYR+GG
Sbjct: 120 AKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
G LGEGLDPL PGGAFDPLGLADDP+ AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 240 IENLYDHLADPVANNAWAYATNFVPGK 266
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/247 (92%), Positives = 239/247 (96%), Gaps = 1/247 (0%)
Query: 19 QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 78
Q NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG
Sbjct: 1 QQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 59
Query: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF 138
WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+KNGVKFGEAVWFKAGAQIF
Sbjct: 60 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIF 119
Query: 139 SEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLG 198
SEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+GGGPLGEGLDPLYPGGAFDPLG
Sbjct: 120 SEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLG 179
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
LADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYA
Sbjct: 180 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYA 239
Query: 259 TNFVPGK 265
TNFVPGK
Sbjct: 240 TNFVPGK 246
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/266 (87%), Positives = 244/266 (91%), Gaps = 7/266 (2%)
Query: 1 MATSAIQQS-AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
MA SA+ Q+ +F GQ + R GV GGRITMRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MAASALHQTTSFLGQALVS------RAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLG 54
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEIL+
Sbjct: 55 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILA 114
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGG
Sbjct: 115 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGG 174
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 175 PLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DH+ADPVANNAWAYATNFVPG
Sbjct: 235 ENLFDHVADPVANNAWAYATNFVPGN 260
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/265 (89%), Positives = 246/265 (92%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ +E VR VG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRHVGDF-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NREL VIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYRIGGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRIGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 NLFDHVADPVNNNAWAYATNFVPGK 263
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/266 (88%), Positives = 247/266 (92%), Gaps = 4/266 (1%)
Query: 1 MATSAIQQS-AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
MA SA+ Q+ +F G R +E VR+VG GGRITMRRTVKSAPQSIWYGPDRPKYLG
Sbjct: 1 MAASALHQTTSFLGAAPRR--DELVRRVG-DFGGRITMRRTVKSAPQSIWYGPDRPKYLG 57
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSEQTPSYLTGEF GDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS
Sbjct: 58 PFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGG
Sbjct: 118 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGG 177
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 178 PLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct: 238 ENLFDHVADPVNNNAWAYATNFVPGK 263
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/254 (90%), Positives = 241/254 (94%), Gaps = 2/254 (0%)
Query: 13 GQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTG 71
GQT LR Q NE VRKVG++ RITMRRTV+SAP+SIWYGPDRPKYLGPFSEQTPSYLTG
Sbjct: 14 GQTLLRPQHNELVRKVGMSQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTG 72
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 131
EFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+K GVKFGEAVWF
Sbjct: 73 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWF 132
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GGGPLGEGLDPLYPG
Sbjct: 133 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPLYPG 192
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
GAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADP A
Sbjct: 193 GAFDPLGLADDPESFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTA 252
Query: 252 NNAWAYATNFVPGK 265
NNAWAYATNFVPGK
Sbjct: 253 NNAWAYATNFVPGK 266
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/266 (87%), Positives = 243/266 (91%), Gaps = 7/266 (2%)
Query: 1 MATSAIQQS-AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
MA SA+ Q+ +F GQ + R GV G RITMRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MAASALHQTTSFLGQALV------ARAAGVDAGDRITMRRTVKSVPQSIWYGPDRPKYLG 54
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEIL+
Sbjct: 55 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILA 114
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGG
Sbjct: 115 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGG 174
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 175 PLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 234
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DH+ADPVANNAWAYATNFVPG
Sbjct: 235 ENLFDHVADPVANNAWAYATNFVPGN 260
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/266 (88%), Positives = 246/266 (92%), Gaps = 4/266 (1%)
Query: 1 MATSAIQQS-AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
MA SA+ Q+ +F G R +E VR+VG GGRITMRRTVKSAPQSIWYGPDRPKYLG
Sbjct: 1 MAASALHQTTSFLGAAPRR--DELVRRVGDF-GGRITMRRTVKSAPQSIWYGPDRPKYLG 57
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSEQTPSYLTGEF GDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS
Sbjct: 58 PFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGG
Sbjct: 118 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGG 177
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNG LAMFSMFGFFVQAIVTGKGPI
Sbjct: 178 PLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGSLAMFSMFGFFVQAIVTGKGPI 237
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct: 238 ENLFDHVADPVNNNAWAYATNFVPGK 263
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/247 (92%), Positives = 239/247 (96%), Gaps = 1/247 (0%)
Query: 19 QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 78
+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY
Sbjct: 8 RRDELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYR 66
Query: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF 138
WDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF
Sbjct: 67 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF 126
Query: 139 SEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLG 198
SEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGPLGEGLD +YPGGAFDPLG
Sbjct: 127 SEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 186
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
LADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYA
Sbjct: 187 LADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYA 246
Query: 259 TNFVPGK 265
TNFVPGK
Sbjct: 247 TNFVPGK 253
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/265 (87%), Positives = 245/265 (92%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ ++ VR VG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DDLVRSVGDF-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGF+EGYR+GGGP
Sbjct: 119 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFIEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 LGEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+DH+ADPV NNAWA+ATNF PG
Sbjct: 239 NLFDHVADPVNNNAWAFATNFAPGS 263
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/266 (86%), Positives = 243/266 (91%), Gaps = 5/266 (1%)
Query: 1 MATSAIQQS-AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
MA SA+ Q+ +F GQ + + GGRITMRRTVKSAPQSIWYGPDRPKYLG
Sbjct: 1 MAASALHQTTSFLGQALVSRPA----AAAADAGGRITMRRTVKSAPQSIWYGPDRPKYLG 56
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEIL+
Sbjct: 57 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILA 116
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGG
Sbjct: 117 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGG 176
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGEGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 177 PLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 236
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL+DH+ADPVANNAWAYATNFVPG
Sbjct: 237 ENLFDHVADPVANNAWAYATNFVPGN 262
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/241 (95%), Positives = 234/241 (97%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQSAFAGQTAL+QSNE VRKVG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVRKVGSFGGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLDP+YPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 N 241
N
Sbjct: 241 N 241
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/243 (93%), Positives = 233/243 (95%)
Query: 23 FVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
VRK G GGR +MRRTVKSAP SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA
Sbjct: 1 LVRKXGSFGGGRFSMRRTVKSAPPSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 60
Query: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
GLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LSKNGVKFGEAVWFKAGAQIFSEGG
Sbjct: 61 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEGG 120
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 202
LDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+GGGPLGEGLDP+YPGGAFDPLGLADD
Sbjct: 121 LDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADD 180
Query: 203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
PD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFV
Sbjct: 181 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFV 240
Query: 263 PGK 265
PGK
Sbjct: 241 PGK 243
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/232 (94%), Positives = 228/232 (98%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
RITMRRTV+SAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 3 RITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 62
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
NRELEVIHSRWAMLGALGCVFPE+L+KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH
Sbjct: 63 NRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 122
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAIWA QVVLMG +EGYR+GGGPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE
Sbjct: 123 AQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKE 182
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 183 LKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANNAWAYATNFVPGK 234
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/235 (93%), Positives = 228/235 (97%)
Query: 31 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
+GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 62
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPN
Sbjct: 63 FARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPN 122
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QVVLMGFVEGYR+GGGPLGEGLD +YPGGAFDPLGLADDP+ FAELK
Sbjct: 123 LIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELK 182
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct: 183 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/265 (84%), Positives = 240/265 (90%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ ++ VR VG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DDLVRSVGDF-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NG+KFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF+EGYR+GGGP
Sbjct: 119 NGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
L EGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 LDEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL+D + DP NNAWA+AT+F PG
Sbjct: 239 NLFDQLRDPGNNNAWAFATHFCPGS 263
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/265 (84%), Positives = 239/265 (90%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQ+IWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGNS-GGRITMRRTVKSAPQNIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTG+FPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPEILSK
Sbjct: 59 FSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGV FGEAVWFKAGAQIFSEGGLDYLGNP L+ QSILAIWA QVVLMGFVEGYR+GGGP
Sbjct: 119 NGVNFGEAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGEGLD +YPGGAFD LGLA+DPD FAE KVKE NGRLAMFSM GFFVQAIVTGKGPIE
Sbjct: 179 LGEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFFVQAIVTGKGPIE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
N +DH+ADPVANNAWAYATNFVPGK
Sbjct: 239 NFFDHVADPVANNAWAYATNFVPGK 263
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/267 (84%), Positives = 237/267 (88%), Gaps = 16/267 (5%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA MLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA-------------MLGALGCVFPELL 106
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GG
Sbjct: 107 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGG 166
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 167 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 226
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 227 IENLFDHLADPTANNAWAYATNFVPGK 253
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/252 (84%), Positives = 225/252 (89%)
Query: 13 GQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 72
GQTAL+ NE RKVG R MRRT S P SIWYGPDRPK+LGPFSEQTPSYLTGE
Sbjct: 15 GQTALKSPNELSRKVGNLGEARTVMRRTRASTPDSIWYGPDRPKFLGPFSEQTPSYLTGE 74
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L+KNG+KFGEAVWFK
Sbjct: 75 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIKFGEAVWFK 134
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGG 192
AG+QIF EGGLDYLGNPNL+HAQSILAIWA QV+LMG VEGYR+GGGPLGEGLD +YPGG
Sbjct: 135 AGSQIFKEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRVGGGPLGEGLDKIYPGG 194
Query: 193 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFF QAIVTGKGPIENL DH+ +P N
Sbjct: 195 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKGPIENLLDHLDNPTVN 254
Query: 253 NAWAYATNFVPG 264
NAWAYATNF PG
Sbjct: 255 NAWAYATNFTPG 266
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/264 (80%), Positives = 236/264 (89%), Gaps = 1/264 (0%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A +A+ + AGQ+ L+ NE RKVG ++ R+TMRRTVKS SIWYG DRPKYLGPF
Sbjct: 3 AATAMHSTTLAGQSLLKPVNELSRKVGSSEA-RVTMRRTVKSTSDSIWYGADRPKYLGPF 61
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S +TPSYLTGEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+
Sbjct: 62 SGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKS 121
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPL
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPL 181
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 182 GEITDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPVANNAWAYATNFVPG
Sbjct: 242 LNDHLADPVANNAWAYATNFVPGN 265
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/269 (81%), Positives = 238/269 (88%), Gaps = 6/269 (2%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT----VKSAPQSIWYGPDRPK 56
MA++ + SAFAGQ L+ NEFV GV GRITMR+T V ++ S WYGPDR K
Sbjct: 4 MASAGVASSAFAGQIVLKPQNEFVG--GVHGEGRITMRKTASKKVVASSGSPWYGPDRVK 61
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 62 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 121
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+LS+NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 122 LLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 181
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 AGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 241
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 242 GPIENLADHLADPVNNNAWAFATNFVPGK 270
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/226 (93%), Positives = 220/226 (97%)
Query: 40 TVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
TV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEV
Sbjct: 1 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEV 60
Query: 100 IHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 159
IH RWAMLGALGCVFPE+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA
Sbjct: 61 IHCRWAMLGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 120
Query: 160 IWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRL 219
IWACQVVLMG +EGYR+GGGPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRL
Sbjct: 121 IWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRL 180
Query: 220 AMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 181 AMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 226
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/264 (78%), Positives = 232/264 (87%), Gaps = 1/264 (0%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A +A+ +A AGQ+ L+ NE RKVG + RI+MR+T + SIWYG DRPKYLGPF
Sbjct: 3 AATAMHSTALAGQSLLKPVNELSRKVGNVEA-RISMRKTASKSSDSIWYGADRPKYLGPF 61
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCV PE+L+KN
Sbjct: 62 SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKN 121
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ GGPL
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPL 181
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
G+ DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 182 GDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPVANNAWAYATNF PG
Sbjct: 242 LNDHLADPVANNAWAYATNFTPGN 265
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 232/264 (87%), Gaps = 3/264 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A +A +A AGQTAL+ NE RKVG R+TMR+ S+ SIWYG DRPKYLGP
Sbjct: 3 ACTATHSTALAGQTALKSINELSRKVGNVQA-RVTMRKA--SSSDSIWYGADRPKYLGPL 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S +TPSYLTGEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCV PE+L+KN
Sbjct: 60 SGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKN 119
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ GGPL
Sbjct: 120 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPL 179
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 180 GEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 239
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPVANNAWAYATNFVPG
Sbjct: 240 LSDHLADPVANNAWAYATNFVPGN 263
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/266 (79%), Positives = 235/266 (88%), Gaps = 3/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSA-PQSIWYGPDRPKYLG 59
A +A+ +A AGQ+ + NE RKVG D R+TMRRTV KSA SIWYG DRPK+LG
Sbjct: 3 AATAMHSTALAGQSLFQPVNELSRKVGNVDS-RVTMRRTVNKSAGSDSIWYGADRPKFLG 61
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+
Sbjct: 62 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA 121
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GG
Sbjct: 122 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 PLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPVANNAWAYATNF PG
Sbjct: 242 ENLNDHLADPVANNAWAYATNFTPGN 267
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/266 (79%), Positives = 236/266 (88%), Gaps = 3/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSA-PQSIWYGPDRPKYLG 59
A +A+ +A AGQ+ ++ NE RKVG + R+TMRRTV KSA SIWYG DRPK+LG
Sbjct: 3 AATAMHSTALAGQSLVKPVNELSRKVGNVEA-RVTMRRTVSKSAGSDSIWYGADRPKFLG 61
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+
Sbjct: 62 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA 121
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GG
Sbjct: 122 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 PLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPVANNAWAYATNF PG
Sbjct: 242 ENLNDHLADPVANNAWAYATNFTPGN 267
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/264 (80%), Positives = 235/264 (89%), Gaps = 3/264 (1%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSA-PQSIWYGPDRPKYLGPF 61
+A+ +A AGQ L+ NE RKVG + R+TMRRTV KSA SIWYG DRPK+LGPF
Sbjct: 5 TAMHSTALAGQGVLKPVNELSRKVGNVEA-RVTMRRTVSKSAGSDSIWYGADRPKFLGPF 63
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S +TPSYLTGEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+
Sbjct: 64 SGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKS 123
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPL
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 183
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 184 GEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPVANNAWAYATNF PG
Sbjct: 244 LNDHLADPVANNAWAYATNFTPGN 267
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/264 (78%), Positives = 233/264 (88%), Gaps = 3/264 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A +A+ + AGQ+ L+ NE RKVG ++ R++MR++ S SIWYG DRPK+LGPF
Sbjct: 3 AATAMHSTTLAGQSLLKPVNELSRKVGTSEA-RVSMRKS--SGSDSIWYGADRPKFLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCV PE+L+KN
Sbjct: 60 SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKN 119
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GGPL
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPL 179
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 180 GEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 239
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPVANNAWAYATNF PG
Sbjct: 240 LNDHLADPVANNAWAYATNFTPGN 263
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/257 (82%), Positives = 231/257 (89%), Gaps = 3/257 (1%)
Query: 11 FAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSA-PQSIWYGPDRPKYLGPFSEQTPSY 68
AGQ+ L+ NE RKVG + R+TMRRTV KSA SIWYG DRPKYLGPFS +TPSY
Sbjct: 12 LAGQSLLKPVNELSRKVGSSQA-RVTMRRTVNKSAGSDSIWYGADRPKYLGPFSGETPSY 70
Query: 69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEA 128
L GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCV PE+L+K+GVKFGEA
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEA 130
Query: 129 VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL 188
VWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GGPLGE DP+
Sbjct: 131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI 190
Query: 189 YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIAD 248
YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+AD
Sbjct: 191 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLAD 250
Query: 249 PVANNAWAYATNFVPGK 265
PVANNAWAYATNFVPG
Sbjct: 251 PVANNAWAYATNFVPGN 267
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/266 (80%), Positives = 235/266 (88%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
+T A+ +FAGQ A++ S G GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 STMALSSPSFAGQ-AVKLSPSTSEITG---NGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPGK 265
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/266 (77%), Positives = 232/266 (87%), Gaps = 3/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
A A+ + AGQ+ L+ NE R+VG D R+TMRRTV + +S IWYG DRPK+LG
Sbjct: 3 AAIAMHSTGLAGQSLLKPVNELSRRVGNVDA-RVTMRRTVSKSARSDSIWYGADRPKFLG 61
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+D ETFA+NRELEVIH+RWAMLGALGC+ PE+L+
Sbjct: 62 PFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPELLA 121
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GG
Sbjct: 122 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 PLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPVANNAWAYATNF PG
Sbjct: 242 ENLNDHLADPVANNAWAYATNFTPGN 267
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/266 (77%), Positives = 232/266 (87%), Gaps = 3/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--SAPQSIWYGPDRPKYLG 59
A +A+ + AGQ L+ +E RKV + R+TMR+TV S SIWYG DRPK+LG
Sbjct: 4 AATAMNSTVLAGQALLKPVSELSRKVNAGEA-RVTMRKTVSKSSGSDSIWYGADRPKFLG 62
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+
Sbjct: 63 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA 122
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GG
Sbjct: 123 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 182
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLG+ DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 183 PLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPVANNAWAYATNFVPG
Sbjct: 243 ENLNDHLADPVANNAWAYATNFVPGN 268
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/266 (80%), Positives = 236/266 (88%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAFATNFVPGK 265
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/260 (80%), Positives = 231/260 (88%), Gaps = 4/260 (1%)
Query: 9 SAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ---SIWYGPDRPKYLGPFSEQT 65
S FAGQT L+ NEFV + ++G RI MR+T K++ S WYGPDR KYLGPFS ++
Sbjct: 14 STFAGQTGLKPQNEFVAR-NASNGSRIAMRKTGKASSVGGGSPWYGPDRVKYLGPFSGES 72
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSKNG+KF
Sbjct: 73 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKF 132
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL 185
GEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE
Sbjct: 133 GEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVT 192
Query: 186 DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245
DP+YPGG+FDPLGLA+DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH
Sbjct: 193 DPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDH 252
Query: 246 IADPVANNAWAYATNFVPGK 265
+ADPVANNAWAYATNF PG
Sbjct: 253 LADPVANNAWAYATNFTPGS 272
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/266 (80%), Positives = 236/266 (88%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LS
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLS 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAFATNFVPGK 265
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/255 (80%), Positives = 229/255 (89%), Gaps = 3/255 (1%)
Query: 13 GQTALRQSNEFVRKVGVADGGRITMRRTVK--SAPQSIWYGPDRPKYLGPFSEQTPSYLT 70
GQ L+ +NE VRKVG + R+TMR+TV S SIWYG DRPK+LGPFS +TPSYL
Sbjct: 14 GQALLQPANELVRKVGTSQA-RVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLN 72
Query: 71 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 130
GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVW
Sbjct: 73 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVW 132
Query: 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYP 190
FKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GGPLG+ DP+YP
Sbjct: 133 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYP 192
Query: 191 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 250
GG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV
Sbjct: 193 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 252
Query: 251 ANNAWAYATNFVPGK 265
ANNAWAYATNFVPG
Sbjct: 253 ANNAWAYATNFVPGN 267
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/268 (80%), Positives = 230/268 (85%), Gaps = 13/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
+T AI +A AG KVG GRITMR+TV +A S WYGPDR KY
Sbjct: 4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKY 54
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 55 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 114
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 115 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 174
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 175 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DHIADPV NNAWAYATNFVPG
Sbjct: 235 PLENLADHIADPVNNNAWAYATNFVPGN 262
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/260 (79%), Positives = 231/260 (88%), Gaps = 4/260 (1%)
Query: 9 SAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ---SIWYGPDRPKYLGPFSEQT 65
S FAGQT L+ NEFV + ++G R+ MR+T +++ S WYGPDR KYLGPFS ++
Sbjct: 5 STFAGQTGLKPQNEFVAR-NASNGSRVAMRKTGRASSVGGGSPWYGPDRVKYLGPFSGES 63
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LSKNG+KF
Sbjct: 64 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKF 123
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL 185
GEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE
Sbjct: 124 GEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVT 183
Query: 186 DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245
DP+YPGG+FDPLGLA+DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH
Sbjct: 184 DPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDH 243
Query: 246 IADPVANNAWAYATNFVPGK 265
+ADPVANNAWAYATNF PG
Sbjct: 244 LADPVANNAWAYATNFTPGS 263
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/266 (80%), Positives = 236/266 (88%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAFATNFVPGK 265
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/216 (95%), Positives = 213/216 (98%)
Query: 50 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 110 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG
Sbjct: 64 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 123
Query: 170 FVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
FVEGYR+GGGPLGEGLD +YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFV
Sbjct: 124 FVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFV 183
Query: 230 QAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
QAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 184 QAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 219
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/274 (78%), Positives = 233/274 (85%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ N + VG G R+TMR++ SA S WYG
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTKKVSASASPSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 274
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/266 (79%), Positives = 236/266 (88%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAFATNFVPGK 265
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/275 (78%), Positives = 233/275 (84%), Gaps = 10/275 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK------SAPQSIWY 50
MA+ I AFAG ++L+ N + VG G R+TMR++ SA S WY
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTTKKVSASASPSPWY 60
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL
Sbjct: 61 GPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 120
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
GCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG
Sbjct: 121 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGA 180
Query: 171 VEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 230
VEGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQ
Sbjct: 181 VEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQ 240
Query: 231 AIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 AIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 275
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/266 (80%), Positives = 234/266 (87%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
AT A+ +FAGQ A++ S G GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASEITG---NGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE ++PLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWSYATNFVPGK 265
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/265 (79%), Positives = 226/265 (85%), Gaps = 2/265 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MAT A+ L EF KV GRI+MR++ S WYGPDR KYLGP
Sbjct: 1 MATMALSSPFVGKVVPLNPGTEFSSKV--RGDGRISMRKSFAKPSGSPWYGPDRVKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LS+
Sbjct: 59 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP L+HAQSILAIWACQV+LMG VEGYRIGGGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEGYRIGGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 LGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 NLADHLADPVNNNAWAYATNFVPGK 263
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/268 (80%), Positives = 230/268 (85%), Gaps = 13/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
+T AI +A AG KVG GRITMR+TV +A S WYGPDR KY
Sbjct: 4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKY 54
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 55 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPEL 114
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 115 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 174
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 175 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DHIADPV NNAWAYATNFVPG
Sbjct: 235 PLENLADHIADPVNNNAWAYATNFVPGN 262
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/274 (78%), Positives = 233/274 (85%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ N + VG G R+TMR++ SA S WYG
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/266 (79%), Positives = 235/266 (88%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
+T A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 STMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGE VWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWSYATNFVPGK 265
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/271 (78%), Positives = 236/271 (87%), Gaps = 10/271 (3%)
Query: 1 MATS--AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT-VKSAPQSI---WYGPDR 54
MATS A+ S FAG+ A++ S G GR+TMR+T K+ P S WYGPDR
Sbjct: 1 MATSTMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDR 56
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114
KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVF
Sbjct: 57 VKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 116
Query: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 174
PE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct: 117 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176
Query: 175 RIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 234
RI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 177 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 235 GKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 237 GKGPLENLADHLADPVNNNAWAFATNFVPGK 267
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/268 (78%), Positives = 229/268 (85%), Gaps = 6/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ + AGQ N V ++ D GR+TMR++V + S WYGPDR KY
Sbjct: 5 STMALSSPSLAGQAVKLAPN--VTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRVKY 62
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 63 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 122
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QV+LMG VEGYRI
Sbjct: 123 LSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIA 182
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 183 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 243 PLENLADHLADPVNNNAWAYATNFVPGK 270
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/266 (78%), Positives = 233/266 (87%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
AT A+ +FAGQ A++ S G GR++MR+TV A S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYR+ GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWSYATNFVPGK 265
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/274 (78%), Positives = 233/274 (85%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ N + VG G R+TMR++ SA S WYG
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PS+LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/274 (77%), Positives = 232/274 (84%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV+NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLADHLADPVSNNAWAYATNFVPGK 274
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/266 (78%), Positives = 233/266 (87%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
AT A+ +FAGQ A++ S G GR++MR+TV A S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPGK 265
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/266 (78%), Positives = 232/266 (87%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
+T A+ +FAGQ A++ S G GR++MR+TV A S WYGPDR KYLG
Sbjct: 4 STMALSSPSFAGQ-AVKLSPSASEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPGK 265
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 233/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ S+FAG+ A++ S G G++TMR+T A S WYGPDR KY
Sbjct: 4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/266 (78%), Positives = 233/266 (87%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
+T A+ +FAGQ A++ S G GR++MR+TV A S WYGPDR KYLG
Sbjct: 4 STMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYR+ GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWSYATNFVPGK 265
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/265 (79%), Positives = 231/265 (87%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
AT A+ + AG+ A++ + +G GR++MR+T K P S WYGPDR KYLGP
Sbjct: 4 ATMALSSPSLAGK-AVKLNPSSSEIMG---NGRVSMRKTTKPVPSGSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH++DPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLSDPVNNNAWAYATNFVPGK 264
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/265 (79%), Positives = 231/265 (87%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
+T A+ +FAG+ A++ S +G GR++MRRT K P S WYGPDR KYL P
Sbjct: 4 STMALSSPSFAGK-AVKLSPAPRELMG---NGRVSMRRTAKPTPSGSPWYGPDRVKYLSP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYR+ GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/268 (78%), Positives = 235/268 (87%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI---WYGPDRPKY 57
AT ++ +FAG+ A++ S +G G++TMR+TV K+ P S WYGPDR KY
Sbjct: 4 ATMSLSSPSFAGK-AVKLSPSSYEIIG---NGKVTMRKTVIKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS +PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 233/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT A+ S+FAG+ A++ S G G++TMR+TV A S WYGPDR KY
Sbjct: 4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVK +KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWSYATNFVPGK 267
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/274 (77%), Positives = 231/274 (84%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I FAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 1 MASCGIGSCGFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV+NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLADHLADPVSNNAWAYATNFVPGK 274
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/265 (80%), Positives = 230/265 (86%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
AT A+ AFAG+ A++ S +G GR++MR+T K S WYGPDR KYLGP
Sbjct: 4 ATMALSSPAFAGK-AVKLSPSSPELMG---NGRVSMRKTTKPVSSGSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNF PGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFAPGK 264
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/268 (78%), Positives = 230/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ + AGQ A++ + VG GRITMR+T + S WYGPDR KY
Sbjct: 4 STMALSSPSLAGQ-AVKLGSSVSNIVGE---GRITMRKTASKSKNVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+
Sbjct: 120 LSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DPLYPGG+FDPLGLA+DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEITDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
PIENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 PIENLADHLADPVNNNAWSYATNFVPGK 267
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/253 (80%), Positives = 228/253 (90%), Gaps = 3/253 (1%)
Query: 13 GQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 72
GQ+ L+ NE R+VG A+ R+TMR++ S SIWYG DRPK+LGPFS +TPSYL GE
Sbjct: 14 GQSLLKPVNELSRRVG-ANEARVTMRKSAGS--DSIWYGADRPKFLGPFSGETPSYLNGE 70
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
F GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVWFK
Sbjct: 71 FAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFK 130
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGG 192
AGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GGPLGE DP+YPGG
Sbjct: 131 AGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYPGG 190
Query: 193 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVAN
Sbjct: 191 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 250
Query: 253 NAWAYATNFVPGK 265
NAWAYATNFVPG
Sbjct: 251 NAWAYATNFVPGN 263
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 229/268 (85%), Gaps = 9/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT AI S+FAG+ S+ + G+ TMR+TV A S WYGPDR KY
Sbjct: 4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 119 FARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 239 PLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/267 (77%), Positives = 231/267 (86%), Gaps = 8/267 (2%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSA----PQSIWYGPDRPKYL 58
T A+ S+FAG+ A++ S+ G G++TMR+TV A S WYGPDR KYL
Sbjct: 5 TMALSSSSFAGK-AVKLSSSSSEITG---NGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 61 GPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ G
Sbjct: 121 ARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/239 (85%), Positives = 223/239 (93%), Gaps = 2/239 (0%)
Query: 29 VADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
++ GRITMR+ V KSAP S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSA
Sbjct: 11 ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 70
Query: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
DPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYL
Sbjct: 71 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 130
Query: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF 206
GNP+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ F
Sbjct: 131 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 190
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 249
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/271 (78%), Positives = 235/271 (86%), Gaps = 10/271 (3%)
Query: 1 MATS--AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT-VKSAPQSI---WYGPDR 54
MATS A+ S FAG+ A++ S G GR+TMR+T K+ P S WYGPDR
Sbjct: 1 MATSTMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDR 56
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114
KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVF
Sbjct: 57 VKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 116
Query: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 174
PE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct: 117 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176
Query: 175 RIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 234
RI GGPLGE +DPLYPGG+FDPLG ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 177 RIAGGPLGEVVDPLYPGGSFDPLGPADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 235 GKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 237 GKGPLENLADHLADPVNNNAWAFATNFVPGK 267
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/270 (77%), Positives = 235/270 (87%), Gaps = 9/270 (3%)
Query: 1 MATSAIQ-QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRP 55
MA+S + S+FAG+ A++ S G G++TMR+T A S+WYGPDR
Sbjct: 1 MASSTMALSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSGSLWYGPDRV 56
Query: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR
Sbjct: 117 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 176
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
+ GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 177 VAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 KGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/265 (77%), Positives = 231/265 (87%), Gaps = 2/265 (0%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSA-PQSIWYGPDRPKYLG 59
A +A+ +A AGQ+ ++ NE RKV R+TMRRTV KSA +IWYG DRPK+LG
Sbjct: 3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLG 62
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+
Sbjct: 63 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA 122
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GG
Sbjct: 123 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 182
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 183 PLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
Query: 240 ENLYDHIADPVANNAWAYATNFVPG 264
ENL DH+ADPVANNAWAYA PG
Sbjct: 243 ENLNDHLADPVANNAWAYAPTSPPG 267
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/268 (79%), Positives = 233/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI---WYGPDRPKY 57
++ A+ +FAGQ A++ S +G GRITMR+T K P S WYGPDR KY
Sbjct: 4 SSMALSSPSFAGQ-AVKLSPTASDLLGE---GRITMRKTAGKPKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct: 120 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/266 (77%), Positives = 233/266 (87%), Gaps = 3/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
A +A+ +A AGQ+ L+ NE RKVG + R++MR++ + S IWYG DRPKYLG
Sbjct: 3 AATAMHSTALAGQSLLKPVNELSRKVGNVEA-RVSMRKSASKSAASDSIWYGADRPKYLG 61
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCV PE+L+
Sbjct: 62 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLA 121
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ GG
Sbjct: 122 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGG 181
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLG+ DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 PLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPVANNAWAYATNFVPG
Sbjct: 242 ENLNDHLADPVANNAWAYATNFVPGN 267
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 232/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ +FAG+ A++ S G G++TMR+T A S WYGPDR KY
Sbjct: 4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/267 (79%), Positives = 228/267 (85%), Gaps = 4/267 (1%)
Query: 1 MATS-AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYL 58
MATS A S F+GQ L+ NE RKVG + R+ M AP SIWYG DRP YL
Sbjct: 1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYL 58
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS PSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L
Sbjct: 59 GPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELL 118
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+KNGVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ G
Sbjct: 119 AKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 179 GPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL DH+ADP NNAWAYATNF PGK
Sbjct: 239 IENLSDHLADPAVNNAWAYATNFTPGK 265
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/265 (79%), Positives = 230/265 (86%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
AT A+ + AG+ A++ + +G GR++MR+T K P S WYGPDR KYLGP
Sbjct: 4 ATMALSSPSLAGK-AVKLNPSSSEIMG---NGRVSMRKTTKPVPSGSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH++DPV NNAWAYATNF PGK
Sbjct: 240 NLADHLSDPVNNNAWAYATNFAPGK 264
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 232/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ S+F G+ A++ S G G++TMR+T A S WYGPDR KY
Sbjct: 4 STMALSSSSFVGK-AVKLSPSSSEITG---NGKVTMRKTATKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/265 (80%), Positives = 228/265 (86%), Gaps = 6/265 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
AT A+ + AG+ + N F +G G I+MR+T K P S WYGPDR KYLGP
Sbjct: 4 ATMALSSPSLAGKAV--KLNPFSEIMG---NGCISMRKTTKPVPSGSPWYGPDRVKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+
Sbjct: 59 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI GGP
Sbjct: 119 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSM GFFVQAIVTGKGP+E
Sbjct: 179 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQAIVTGKGPLE 238
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 NLADHLADPVNNNAWAYATNFVPGK 263
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/265 (79%), Positives = 229/265 (86%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
+T A+ AFAG+ A++ S +G GR+ MR+T P S WYGPDR KYLGP
Sbjct: 4 STMALSSPAFAGK-AVKLSPSAPELMG---NGRVNMRKTFNKPPSGSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/216 (93%), Positives = 210/216 (97%)
Query: 50 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 110 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
LGCVFPEILSKNG+KFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMG
Sbjct: 64 LGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 123
Query: 170 FVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
F+EGYR+GGGPLGEGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFSMFGFFV
Sbjct: 124 FIEGYRVGGGPLGEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV 183
Query: 230 QAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
QAIVTGKGP+ENL+DHIADPV NNAWA+ATNF PG
Sbjct: 184 QAIVTGKGPVENLFDHIADPVNNNAWAFATNFAPGS 219
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/266 (77%), Positives = 231/266 (86%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
AT A+ +FAGQ A++ S G GR++MR+T + S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASEITG---NGRVSMRKTAAKPVSSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLT EFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPGK 265
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/265 (79%), Positives = 226/265 (85%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
+T A+ +FAG T N + GGR++MR+T AP S WYGPDR YLGP
Sbjct: 4 STMALSSPSFAGTTVKLGPN----ASDILGGGRVSMRKTGFKAPSGSPWYGPDRVLYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LS+
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/266 (76%), Positives = 230/266 (86%), Gaps = 4/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--SAPQSIWYGPDRPKYLG 59
A +A+ + AGQ+ R NE KVG + R++MR+TV S SIWYG DRPK+LG
Sbjct: 3 AATAMHSTTLAGQSLFR-FNELSSKVGSSQA-RVSMRKTVSKSSGSDSIWYGADRPKWLG 60
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+
Sbjct: 61 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA 120
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ GG
Sbjct: 121 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGG 180
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLG+ DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 181 PLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPVANNAWAYATNF PG
Sbjct: 241 ENLNDHLADPVANNAWAYATNFTPGN 266
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/268 (79%), Positives = 228/268 (85%), Gaps = 13/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
+T +I +A AG KVG GRITMR+T +A S WYGPDR KY
Sbjct: 4 STMSISSTAMAGTPI---------KVGSFGEGRITMRKTAAKPKVAASGSPWYGPDRVKY 54
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 55 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 114
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI
Sbjct: 115 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 174
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 175 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 234
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPG
Sbjct: 235 PLENLADHLADPVNNNAWAYATNFVPGN 262
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/266 (78%), Positives = 233/266 (87%), Gaps = 7/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
+T A+ S+ AGQ A++ + ++GV GR++MR+T + S WYGPDR KYLG
Sbjct: 4 STMALSSSSLAGQ-AIKLAPS-TPELGV---GRVSMRKTASKTVSSGSPWYGPDRVKYLG 58
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS
Sbjct: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 118
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI GG
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 178
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 179 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPGK 264
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 230/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ + AFAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 1 MASCGSGRCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLTDHLADPVNNNAWAYATNFVPGK 274
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/266 (78%), Positives = 232/266 (87%), Gaps = 7/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
+T A+ S+ AGQ A++ + ++GV GR++MR+T S WYGPDR KYLG
Sbjct: 4 STMALSSSSLAGQ-AIKLAPS-TPQLGV---GRVSMRKTASKTVTSGSPWYGPDRVKYLG 58
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS
Sbjct: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 118
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI GG
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 178
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 179 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPGK 264
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/269 (78%), Positives = 232/269 (86%), Gaps = 9/269 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRR-TVKSAPQ----SIWYGPDRPK 56
AT A+ + AG+ A++ + +G GR+TMR+ T K+ P S WYGPDR K
Sbjct: 3 ATMALSSPSLAGK-AVKLAPSASDVLGE---GRVTMRKSTAKAKPAAASGSPWYGPDRVK 58
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 59 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 119 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 178
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 GPLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/229 (93%), Positives = 223/229 (97%)
Query: 37 MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
MRRTVKS PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW+TAG+SADPETFA+NRE
Sbjct: 1 MRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRE 60
Query: 97 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
LEVIHSRWAMLGALGCVFPEIL+KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQS
Sbjct: 61 LEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 120
Query: 157 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 216
ILAIWACQVVLMGFVEGY +GGGPLGEGLD +YPGGAF+PLGLADDPD AELKVKELKN
Sbjct: 121 ILAIWACQVVLMGFVEGYGVGGGPLGEGLDKVYPGGAFEPLGLADDPDTAAELKVKELKN 180
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPG
Sbjct: 181 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGN 229
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 233/269 (86%), Gaps = 8/269 (2%)
Query: 1 MATS--AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPK 56
MATS A+ +FAG+ A++ S +G GR++MR+T + S WYGPDR K
Sbjct: 1 MATSTMALSSPSFAGK-AVKLSPSAPELMG---NGRVSMRKTAAKSVSSGSPWYGPDRVK 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 57 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRV 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/241 (84%), Positives = 221/241 (91%), Gaps = 4/241 (1%)
Query: 29 VADGGRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
+ GRITMR++V K+ P S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGL
Sbjct: 27 ITGNGRITMRKSVAKAKPASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 86
Query: 85 SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLD 144
SADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLD
Sbjct: 87 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 146
Query: 145 YLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPD 204
YLGNP+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+
Sbjct: 147 YLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPE 206
Query: 205 QFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPG
Sbjct: 207 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 266
Query: 265 K 265
K
Sbjct: 267 K 267
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/266 (78%), Positives = 233/266 (87%), Gaps = 7/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
+T A+ S+ AGQ A++ + ++GV GR++MR+T + S WYGPDR KYLG
Sbjct: 4 STMALSSSSLAGQ-AIKLAPS-TPQLGV---GRVSMRKTASKTVSSGSPWYGPDRVKYLG 58
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI GG
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 178
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 179 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPGK 264
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/266 (77%), Positives = 224/266 (84%), Gaps = 6/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
+T A+ AGQ N + + TMR+T + S WYGPDR KYLG
Sbjct: 4 STMALSSPTLAGQAVKLSPN----APEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPGK 265
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/265 (79%), Positives = 229/265 (86%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
+T A+ + AG TA++ + +G GGR++MR+T AP S WYGPDR YLGP
Sbjct: 4 STMALSSPSLAG-TAVKLGPNASQILG---GGRVSMRKTGFKAPSGSPWYGPDRVLYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LS+
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 231/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
A++ S FAG+ A++ S G G++TMR+T A S WYGPDR KY
Sbjct: 3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 239 PLENLADHLADPVNNNAWSYATNFVPGK 266
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 230/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT A+ +FAG+ A++ S G G+ TMR+TV A S WYGPDR KY
Sbjct: 4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWSYATNFVPGK 267
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 234/274 (85%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AFAG ++++ N + VG A G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 227/268 (84%), Gaps = 4/268 (1%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKY 57
MAT + S F G+ + + + GR+TMR+T ++ S WYGPDR KY
Sbjct: 1 MATMTLS-STFTGKAVPLSAQTELPATVRSSNGRVTMRKTAGKPAASSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI
Sbjct: 120 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 233/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI---WYGPDRPKY 57
+T A+ +FAG+ A++ S +G GRITMR+ KS +I WYGPDR KY
Sbjct: 4 STMALSSPSFAGK-AVKLSPTASETLGE---GRITMRKAAGKSKVATIDSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAFATNFVPGK 267
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 227/269 (84%), Gaps = 8/269 (2%)
Query: 1 MATSAIQQSA--FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPK 56
MA SA+ S+ AGQ N + + TMR+T + S WYGPDR K
Sbjct: 1 MAASAMALSSPTLAGQAVKLSPN----APEIQGNAKFTMRKTASKSVSSGSPWYGPDRVK 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 57 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 228/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ +FAG A++ S G G+ MR+TV A S WYGPDR KY
Sbjct: 4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLVDHLADPVNNNAWAYATNFVPGK 267
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/265 (78%), Positives = 225/265 (84%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
+T A+ +FAG N + GGR++MR+T AP S WYGPDR YLGP
Sbjct: 4 STMALSSPSFAGTXVKLGPN----ASDILGGGRVSMRKTGFKAPSGSPWYGPDRVLYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LS+
Sbjct: 60 LSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/267 (77%), Positives = 227/267 (85%), Gaps = 7/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT---VKSAPQSIWYGPDRPKYL 58
AT A+ +FAG+ + GV GR+TMR+ ++ S WYGPDR KYL
Sbjct: 3 ATMALSSPSFAGKAVKLAPS----ASGVLGQGRVTMRKAGGKPAASSGSPWYGPDRVKYL 58
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 59 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI G
Sbjct: 119 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 178
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 179 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 LENLADHLADPVNNNAWAYATNFVPGK 265
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/269 (79%), Positives = 231/269 (85%), Gaps = 8/269 (2%)
Query: 1 MATSAIQQSA--FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPK 56
MA SA+ S+ AGQ A++ S G A + TMR+T + S WYGPDR K
Sbjct: 1 MAASAMALSSPTLAGQ-AVKLSPTAPEIQGNA---KFTMRKTASKSVSSGSPWYGPDRVK 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 57 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/268 (75%), Positives = 230/268 (85%), Gaps = 7/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----APQSIWYGPDRPKY 57
++ A+ G+ +N +++G G R TMR++ + + S WYGPDR KY
Sbjct: 4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKY 60
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 61 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPEL 120
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct: 121 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 180
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH++DPV NNAW+YATNFVPGK
Sbjct: 241 PLENLADHLSDPVNNNAWSYATNFVPGK 268
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/267 (78%), Positives = 227/267 (85%), Gaps = 11/267 (4%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYL 58
T + +AFAG+ S+ F R+TMR+T +A S WYGPDR YL
Sbjct: 1 TMGLSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKPKPAASGSPWYGPDRVLYL 53
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 54 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 113
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI G
Sbjct: 114 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 173
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 174 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 233
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 234 LENLADHLADPVNNNAWAYATNFVPGK 260
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/264 (78%), Positives = 228/264 (86%), Gaps = 5/264 (1%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPF 61
T A+ +FAG+ A++ S G GR++MR+T K P S WYGPDR YLGP
Sbjct: 5 TMALSSPSFAGK-AVKFSPSTPEIQGT---GRVSMRKTTKPVPSGSPWYGPDRVLYLGPL 60
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++N
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPL 180
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 LADHLADPVNNNAWAYATNFVPGK 264
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/235 (85%), Positives = 216/235 (91%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR++ + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 30 GRVSMRKSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 149
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP+ FAELK
Sbjct: 150 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELK 209
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 210 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPGK 264
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/269 (75%), Positives = 229/269 (85%), Gaps = 11/269 (4%)
Query: 2 ATSAIQQSAFAGQTA-LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPK 56
AT A+ S+FAG+ + S+E R G++TMR+TV A S WYGPDR K
Sbjct: 4 ATMALSSSSFAGKAVNVPSSSEITRN------GKVTMRKTVTKAKPVSSGSPWYGPDRVK 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIH RW MLGALGCVFPE
Sbjct: 58 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPE 117
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+ ++NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 118 LFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL+VKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 178 AGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 233/274 (85%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNL+HAQSILAIWACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/235 (85%), Positives = 219/235 (93%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+TV +++ S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 29 GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
L+HAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELK
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELK 208
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/268 (76%), Positives = 231/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSA----PQSIWYGPDRPKY 57
+T A+ S+FAG+ A++ S G G++TMR+T A S WYGP+R KY
Sbjct: 4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 120 LARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 228/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRL MFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLTMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIE+L DH+ADPV NNAWAY TNFVPGK
Sbjct: 241 IVTGKGPIEDLADHLADPVNNNAWAYGTNFVPGK 274
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 229/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYG 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALG
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 121 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 180
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 181 EGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 240
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 IVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 225/268 (83%), Gaps = 11/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV----KSAPQSIWYGPDRPKY 57
AT A+ A G+ A + F GRITMR+T +A S WYG DR Y
Sbjct: 4 ATMALTSRALVGKPATSTRDVFGE-------GRITMRKTAGKPKPAASGSPWYGADRVLY 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 57 LGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 176
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 177 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 PVENLADHLADPVNNNAWAYATNFVPGK 264
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/265 (78%), Positives = 226/265 (85%), Gaps = 4/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
AT + + AG+ + +G GRI+MR+T KS S WYGPDR KYLGP
Sbjct: 3 ATMVLSSPSLAGKAVKLAPSPASELMG---NGRISMRKTGKSVSSGSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DPLYPGG+FDPLGLADDP+ F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 227/268 (84%), Gaps = 10/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
AT A+ A G+ A + + V GRITMR+T +A S WYG DR Y
Sbjct: 4 ATMALTSRALVGKPATTSTRD------VFGEGRITMRKTAAKPKPAASGSPWYGADRVLY 57
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 58 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA 177
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 178 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 238 PLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 228/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ +FAG A++ S G G+ MR+TV A S WYGPDR KY
Sbjct: 4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+
Sbjct: 120 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P++NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLDNLVDHLADPVNNNAWAYATNFVPGK 267
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/239 (84%), Positives = 217/239 (90%), Gaps = 2/239 (0%)
Query: 29 VADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
V GR+TMR++ K A S WYGPDR KYLGPFS + PSYL GEFPGDYGWDTAGLSA
Sbjct: 27 VRSNGRVTMRKSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSA 86
Query: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
DPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF 206
GNP+LIHAQSILAIWA QVVLMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ F
Sbjct: 147 GNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAF 206
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 207 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 234/274 (85%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AFAG ++++ N + VG A G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 65 PDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLGLADDPD FA++KVKE+KNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/267 (76%), Positives = 228/267 (85%), Gaps = 9/267 (3%)
Query: 2 ATSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYL 58
AT A+ S FAG+ L S+E V R++MR+T + S WYGPDR KYL
Sbjct: 4 ATMALSSSTFAGKAVKNLSSSSE------VQGDARVSMRKTAATKKVGSPWYGPDRVKYL 57
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 58 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELL 117
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVLMG VEGYR+ G
Sbjct: 118 ARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADD + FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 178 GPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 238 LENLADHLADPVNNNAWAFATNFVPGK 264
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 231/268 (86%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI---WYGPDRPKY 57
+T A+ + AGQ A++ + +G GR+TMR+T + P S WYGPDR KY
Sbjct: 4 STMALSSPSLAGQ-AIKLAPSSSDLLGE---GRVTMRKTAGRPKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct: 120 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/237 (85%), Positives = 219/237 (92%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTV---KSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GR++MR+T K AP S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 18 GRVSMRKTAAPKKVAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 77
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGN
Sbjct: 78 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 137
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 138 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 197
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL D +ADPVANNAW+YATNFVPGK
Sbjct: 198 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANNAWSYATNFVPGK 254
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/235 (85%), Positives = 218/235 (92%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+TV + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELK
Sbjct: 149 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELK 208
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/238 (83%), Positives = 219/238 (92%), Gaps = 6/238 (2%)
Query: 33 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
GRITMR+T P+++ WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD 89
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 90 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 149
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+L+HAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW +ATNFVPGK
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/266 (78%), Positives = 231/266 (86%), Gaps = 7/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
+T A+ S+ AGQ A++ + ++GV GR++MR+T S WYGPDR KYLG
Sbjct: 4 STMALSSSSLAGQ-AIKLAPS-TPQLGV---GRVSMRKTASKTVTSGSPWYGPDRVKYLG 58
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSY TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS
Sbjct: 59 PFSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 118
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI GG
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 178
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELK+GRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 179 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKHGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPGK 264
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/266 (78%), Positives = 226/266 (84%), Gaps = 8/266 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT---VKSAPQSIWYGPDRPKYLG 59
T A+ AFAG+ + V + R+TMR+T K+ S WYGPDR YLG
Sbjct: 5 TMALSSPAFAGKAV-----KNVPSSALFGEARVTMRKTGAKPKATSGSPWYGPDRVLYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
P S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGV+FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTG GPI
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGNGPI 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYATNFVPGK 265
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 226/268 (84%), Gaps = 12/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT A+ S FAG+ V+ + RITMR+TV A S WYG DR Y
Sbjct: 4 ATMALSSSTFAGKA--------VKNLPALGEARITMRKTVAKAKPVSSGSPWYGSDRVLY 55
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 56 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 115
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 116 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 175
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 176 GGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 236 PLENLADHLADPVNNNAWAFATNFVPGK 263
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/264 (78%), Positives = 227/264 (85%), Gaps = 5/264 (1%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPF 61
T A+ +FAG+ A++ S G GR++MR+T K P S WYGPDR YLGP
Sbjct: 5 TMALSSPSFAGK-AVKFSPSTPEIQGT---GRVSMRKTTKPVPSGSPWYGPDRVLYLGPL 60
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++N
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPL 180
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DPLYPGG+FDPLG ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 181 GEVTDPLYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPV NNAWAYATNFVPGK
Sbjct: 241 LADHLADPVNNNAWAYATNFVPGK 264
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/267 (79%), Positives = 223/267 (83%), Gaps = 29/267 (10%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
+K GVKFGEAVWFK AIWA QVVLMG +EGYR+GG
Sbjct: 120 AKTGVKFGEAVWFK--------------------------AIWASQVVLMGLIEGYRVGG 153
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 154 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 213
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
IENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 214 IENLFDHLADPTANNAWAYATNFVPGK 240
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/258 (80%), Positives = 226/258 (87%), Gaps = 6/258 (2%)
Query: 11 FAGQTALRQSNEFVRKVGVADGGRITMRR--TVKSAPQ-SIWYGPDRPKYLGPFSEQTPS 67
FAGQ + +G GR++MR+ T K AP S WYGPDR KYLGPFS + PS
Sbjct: 14 FAGQAVKLSPSSASELMG---NGRVSMRKAATKKVAPSGSPWYGPDRVKYLGPFSGEPPS 70
Query: 68 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE 127
YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGE
Sbjct: 71 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGE 130
Query: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 187
AVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI GGPLGE +DP
Sbjct: 131 AVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP 190
Query: 188 LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIA 247
+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+
Sbjct: 191 IYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLF 250
Query: 248 DPVANNAWAYATNFVPGK 265
DPV NNAWA+ATNFVPGK
Sbjct: 251 DPVNNNAWAFATNFVPGK 268
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/235 (85%), Positives = 219/235 (93%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+TV +++ S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 29 GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FA+NRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 89 FARNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
L+HAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELK
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELK 208
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/234 (85%), Positives = 215/234 (91%), Gaps = 2/234 (0%)
Query: 34 RITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 91
+ TMR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 22 KFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 81
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L
Sbjct: 82 AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL 141
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
+HAQSILAIWACQVVLMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELKV
Sbjct: 142 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKV 201
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 202 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/265 (78%), Positives = 228/265 (86%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGP 60
+T A+ +FAGQ A++ S +G GRI+M+RT + S WYGPDR KYLGP
Sbjct: 4 STMALSSPSFAGQ-AVKLSPSAPELMG---NGRISMKRTTRPVSSGSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAM GALGCVFPE+LS+
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIF EGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGP
Sbjct: 120 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE DP+YPGG+FDPLGLAD P+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADVPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAYATNFVPGK 264
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/267 (77%), Positives = 224/267 (83%), Gaps = 3/267 (1%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYL 58
MA+ + + + L EF +G R++MR+ S WYGPDR KYL
Sbjct: 1 MASMTLSSTFTSKAVPLNGITEFSSATCCGNG-RVSMRKAAGKVADSGSPWYGPDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI G
Sbjct: 120 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 LENLADHLADPVNNNAWAYATNFVPGK 266
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/269 (77%), Positives = 232/269 (86%), Gaps = 8/269 (2%)
Query: 1 MATS--AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPK 56
MATS A+ +FAG+ A++ S +G GR++MR+T + S WYGPDR K
Sbjct: 1 MATSTMALSSPSFAGK-AVKLSPSAPELMG---NGRVSMRKTAAKNVSSGSPWYGPDRVK 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 57 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRV 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/237 (83%), Positives = 216/237 (91%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTV----KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GRITMR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 31 GRITMRKTAGKTKNVSSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGN
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 150
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAIWACQV+LMG +EGYR+ GGPLGE +DPLYPGG+FDPLGLA+DP+ FAE
Sbjct: 151 PSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNF PGK
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFAPGK 267
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/237 (84%), Positives = 216/237 (91%), Gaps = 2/237 (0%)
Query: 31 DGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GGRI+MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 28 SGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 87
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFA+NRELEVIHSRWAMLGALG VFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAE
Sbjct: 148 PSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAE 207
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/266 (77%), Positives = 228/266 (85%), Gaps = 7/266 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
+T A+ + AGQ A++ S GGRI+MR+ + S WYGPDR KYLG
Sbjct: 4 STMALSSPSLAGQ-AIKLSPSTPE----LSGGRISMRKAASKSVSSGSPWYGPDRVKYLG 58
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 59 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 118
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI GG
Sbjct: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 178
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFS+FGFFVQAIVTGKGP+
Sbjct: 179 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKGPL 238
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 239 ENLADHLADPVNNNAWAYATNFVPGK 264
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/238 (83%), Positives = 218/238 (91%), Gaps = 4/238 (1%)
Query: 32 GGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
G R TMR++ + + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 29 GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD 88
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 89 PETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLG 148
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FA
Sbjct: 149 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 208
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 266
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 230/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
+T A+ + AG+ AL+ + +G GR+TMR+T A S WYG DR KY
Sbjct: 4 STMALSSPSLAGK-ALKLAPSASDLLGE---GRVTMRKTGGRAKPVSSGSPWYGTDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QV+LMG VEGYRIG
Sbjct: 120 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIG 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAYATNFVPGK 267
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/265 (76%), Positives = 232/265 (87%), Gaps = 5/265 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-APQSIWYGPDRPKYLGP 60
+T A+ A AG+ A++ + G GR++MR+TVK+ S WYGPDR KYLGP
Sbjct: 4 STMALSSPALAGK-AVKVAPSSSELFG---NGRVSMRKTVKAPVSDSPWYGPDRVKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+LMG VEGYR+ GGP
Sbjct: 120 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE +DPLYPGG+FDPLGLA+DP++ AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 180 LGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 NLADHLADPVNNNAWAFATNFVPGK 264
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 224/268 (83%), Gaps = 11/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
AT AI A G+ A + F GRITMR+T +A S WYG DR Y
Sbjct: 4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPAASGSPWYGADRVLY 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 57 LGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 117 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 176
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 177 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DHIADPV NNAWAYATNFVPGK
Sbjct: 237 PLENLADHIADPVNNNAWAYATNFVPGK 264
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/268 (76%), Positives = 230/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
A++ S FAG+ A++ S G G++TMR+T A S WYGPDR KY
Sbjct: 3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G PLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQA+VTGKG
Sbjct: 179 GEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 239 PLENLADHLADPVNNNAWSYATNFVPGK 266
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/236 (84%), Positives = 216/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 31 RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 91 TFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 151 SLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/236 (86%), Positives = 217/236 (91%), Gaps = 3/236 (1%)
Query: 33 GRITMRR--TVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
GR+TMR+ T KS P S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 30 GRVTMRKATTKKSVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPE 89
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 90 TFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGP GE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 150 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPPGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNF PGK
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK 265
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 228/269 (84%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPK 56
+T A+ +AFAG+ S+ F R+TMR+T A S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVL 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/238 (82%), Positives = 219/238 (92%), Gaps = 6/238 (2%)
Query: 33 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
GR+TMR+T P+++ WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 31 GRVTMRKTA-GKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSAD 89
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETF+KNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 90 PETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 149
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+L+HAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW++ATNFVPGK
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSFATNFVPGK 267
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 228/269 (84%), Gaps = 11/269 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPK 56
+T A+ +AFAG+ S+ + R+TMR+T A S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSSAFGEA------RVTMRKTAAKAKPAAASGSPWYGPDRVL 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 58 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 177
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 178 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DHIADPV NNAWAYATNFVPGK
Sbjct: 238 GPLENLADHIADPVNNNAWAYATNFVPGK 266
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/270 (76%), Positives = 229/270 (84%), Gaps = 10/270 (3%)
Query: 1 MATSAIQ-QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRP 55
MAT+ + SAFAG+ S + V + R+TMR+T A Q S WYG DR
Sbjct: 1 MATTTMSLSSAFAGK-----SVKNVASSALFGEARVTMRKTAAKAKQVSSGSPWYGADRV 55
Query: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFP
Sbjct: 56 LYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
E+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct: 116 ELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 175
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 176 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTG 235
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 236 KGPLENLADHLADPVNNNAWAFATNFVPGK 265
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 230/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
A++ S FAGQ A++ S G GR++MR+T + S WYGPDR KY
Sbjct: 3 ASTMALSSPFAGQ-AVKTSPSSSELFG---NGRVSMRKTAAAKKAAPSGSPWYGPDRVKY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPVANNAW+YATNFVPGK
Sbjct: 239 PLENLADHLADPVANNAWSYATNFVPGK 266
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/236 (84%), Positives = 215/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R TMR+ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 31 RFTMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 91 TFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 151 SLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/268 (76%), Positives = 225/268 (83%), Gaps = 9/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT ++ AFAG+ + V + R+TMR+T A Q S WYG DR Y
Sbjct: 4 ATMSLSSPAFAGKAV-----KNVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DHI DPV NNAWA+ATNFVPGK
Sbjct: 239 PLENLADHITDPVNNNAWAFATNFVPGK 266
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/268 (75%), Positives = 227/268 (84%), Gaps = 9/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT ++ S FAG+ + V + + R+TMR+T A Q S WYG DR Y
Sbjct: 4 ATMSLSSSTFAGKAV-----KNVPSLALLGEARVTMRKTAAKAKQVSSGSPWYGADRVLY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 239 PLENLADHIADPVNNNAWAFATNFVPGK 266
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/238 (82%), Positives = 219/238 (92%), Gaps = 6/238 (2%)
Query: 33 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
GR+TMR+T P+++ WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 31 GRVTMRKTA-GKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSAD 89
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETF+KNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 90 PETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 149
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+L+HAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW++ATNFVPGK
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSFATNFVPGK 267
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/234 (85%), Positives = 215/234 (91%), Gaps = 2/234 (0%)
Query: 33 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR++ + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 27 GRVSMRKSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 86
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+
Sbjct: 87 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 146
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP+ FAELK
Sbjct: 147 LIHAQSILAIWATQVLLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELK 206
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
VKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPG
Sbjct: 207 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNNAWAYATNFVPG 260
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/234 (85%), Positives = 214/234 (91%), Gaps = 1/234 (0%)
Query: 33 GRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 91
GR+TMR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWD AGLSADPETF
Sbjct: 30 GRVTMRKTGRQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDAAGLSADPETF 89
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 90 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 149
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
IHAQSILAIWACQVVLMG VEGYRI GGPLG+ DPLYPGG+FDPLGLADDP+ FAELKV
Sbjct: 150 IHAQSILAIWACQVVLMGAVEGYRIAGGPLGKVTDPLYPGGSFDPLGLADDPEAFAELKV 209
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 210 KEIKNGRSAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 226/268 (84%), Gaps = 14/268 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
AT A+ A AG+ A + E GRITMR++ +A S WYG DR Y
Sbjct: 4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASGSPWYGADRVLY 53
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 54 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 113
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI
Sbjct: 114 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 173
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 174 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 233
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 234 PLENLADHLADPVNNNAWAYATNFVPGK 261
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/269 (77%), Positives = 229/269 (85%), Gaps = 8/269 (2%)
Query: 1 MATS--AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPK 56
MATS A+ +FAG+ + G+ R++MR++V + S WYGPDR K
Sbjct: 1 MATSTMALSSPSFAGKAVKLTPS----APGLMGNARVSMRKSVGKPVSSGSPWYGPDRVK 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 57 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI
Sbjct: 117 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/236 (84%), Positives = 215/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 31 RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 91 TFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QVVLMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 151 SLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAWAYATNFVPGK
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 266
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/234 (85%), Positives = 214/234 (91%), Gaps = 2/234 (0%)
Query: 34 RITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 91
R+TMR++ + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 32 RVTMRKSATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 91
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L
Sbjct: 92 AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL 151
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
IHAQSILAIWA QVVLMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELKV
Sbjct: 152 IHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKV 211
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ DPV NNAWAYATNFVPGK
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLTDPVNNNAWAYATNFVPGK 265
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/274 (75%), Positives = 232/274 (84%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEG LDYLG+PNL+HAQSILAIWACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/266 (78%), Positives = 226/266 (84%), Gaps = 8/266 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT---VKSAPQSIWYGPDRPKYLG 59
T A+ AFAG+ + V G+ R+TMR+T K+A S WYGPDR YLG
Sbjct: 5 TMALSSPAFAGKAV-----KNVPSSGLFGEARMTMRKTGAKPKAASGSPWYGPDRVLYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
P S + PSYLTGEF GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 60 PLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAY NFVPGK
Sbjct: 240 ENLADHLADPVNNNAWAYVPNFVPGK 265
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 226/268 (84%), Gaps = 12/268 (4%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-----APQSIWYGPDRPKY 57
T A+ +AFAG+ S+ F R+TMR+T + S WYGPDR Y
Sbjct: 42 TMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLY 94
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 95 LGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 154
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+
Sbjct: 155 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVA 214
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 215 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 274
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 275 PLENLADHLADPVNNNAWAYATNFVPGK 302
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/237 (82%), Positives = 215/237 (90%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTV----KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GRITMR+T + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 31 GRITMRKTAGKTKSVSSDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETF KNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGN
Sbjct: 91 ETFTKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 150
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAIWACQV+LMG +EGYR+ GGPLGE DPLYPGG+FDPLGLA+DP+ FAE
Sbjct: 151 PSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNF PGK
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFAPGK 267
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/267 (77%), Positives = 231/267 (86%), Gaps = 7/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK---SAPQSIWYGPDRPKYL 58
+T A+ +FAG A++ + G GRI+MR+T K ++ S WYGPDR KYL
Sbjct: 4 STMALSSPSFAGM-AVKVAPSSSELFG---SGRISMRKTGKKPAASSGSPWYGPDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL D +ADPV NNAWAYATNFVPGK
Sbjct: 240 LENLADPLADPVNNNAWAYATNFVPGK 266
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 223/268 (83%), Gaps = 11/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
AT AI A G+ A + F GRITMR+T +A S WYG DR Y
Sbjct: 4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPAASGSPWYGADRVLY 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 57 LGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 117 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 176
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 177 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
PIENL DH+ DPV NNAWAYATNFVPGK
Sbjct: 237 PIENLADHLTDPVNNNAWAYATNFVPGK 264
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/238 (82%), Positives = 218/238 (91%), Gaps = 4/238 (1%)
Query: 32 GGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
G R TMR++ + + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 29 GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD 88
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 89 PETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLG 148
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FA
Sbjct: 149 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 266
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 226/268 (84%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT A+ S FAG+ A++ S G GR TMR+T A S WYGPDR KY
Sbjct: 4 ATMALSSSTFAGK-AVKLSPSSSEITG---NGRFTMRKTAAKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGE PGDYGWDTAGLSADPETFAKNRELEVIH RWA+L LGCVFPE+
Sbjct: 60 LGPFSGEAPSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFK G+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct: 120 LSRNGVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAFATNFVPGK 267
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/233 (87%), Positives = 215/233 (92%), Gaps = 4/233 (1%)
Query: 37 MRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
MR+TV +A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA
Sbjct: 1 MRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LI
Sbjct: 61 KNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI 120
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVK
Sbjct: 121 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 180
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct: 181 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGN 233
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/235 (85%), Positives = 217/235 (92%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+TV + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELK
Sbjct: 149 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELK 208
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A PV NNAWAYATNFVPGK
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/269 (76%), Positives = 227/269 (84%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-----APQSIWYGPDRPK 56
+T A+ +AFAG+ S+ F R+TMR+T + S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVL 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 57 YLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 217/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R TMR++ + + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 34 RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE 93
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 94 TFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 153
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 154 SLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 213
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 214 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/268 (76%), Positives = 224/268 (83%), Gaps = 9/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT ++ AFAG+ + V + R+TMR+T A Q S WYG DR Y
Sbjct: 4 ATMSLSSPAFAGKAV-----KNVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQ VLMG VEGYRI
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DHI DPV NNAWA+ATNFVPGK
Sbjct: 239 PLENLADHITDPVNNNAWAFATNFVPGK 266
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/237 (84%), Positives = 216/237 (91%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GRITMR+T +A S WYG DR YLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 30 GRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 149
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+LIHAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 150 PSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 209
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/270 (77%), Positives = 228/270 (84%), Gaps = 10/270 (3%)
Query: 1 MATSAIQQS--AFAGQTALRQSNEFVRKVGVADGGRITMRRT---VKSAPQSIWYGPDRP 55
MAT+ + S AFAG+ + + R+TMR+T K A S WYGPDR
Sbjct: 1 MATTTMTLSSPAFAGKAVKNMPSS-----ALFGDARMTMRKTGAKPKVASGSPWYGPDRV 55
Query: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
YLGP S + PSYLTGEF GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP
Sbjct: 56 LYLGPLSGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
E+L++NGV+FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR
Sbjct: 116 ELLARNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR 175
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTG
Sbjct: 176 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 236 KGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 231/268 (86%), Gaps = 9/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRR---TVKSAPQ-SIWYGPDRPKY 57
++ A+ A AG+ + +++GVA + TMR+ T K A S WYGPDR KY
Sbjct: 4 SSMALTSPALAGKPVKLTPSS--QELGVA---KFTMRKGATTKKVASSGSPWYGPDRVKY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+
Sbjct: 59 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct: 119 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 239 PLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/235 (84%), Positives = 218/235 (92%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+TV +++ S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 29 GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FA+N ELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 89 FARNPELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
L+HAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELK
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELK 208
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/235 (83%), Positives = 218/235 (92%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+TV +++ S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 28 GRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 87
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+ IFSEGGLDYLGNP+
Sbjct: 88 FARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSLIFSEGGLDYLGNPS 147
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP+ FAELK
Sbjct: 148 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELK 207
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV +NAWAYATNFVPGK
Sbjct: 208 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNSNAWAYATNFVPGK 262
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/255 (79%), Positives = 218/255 (85%), Gaps = 1/255 (0%)
Query: 11 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLT 70
F+GQ L+ NE RKVG + M S SIWYG DRP YLGPFS PSYLT
Sbjct: 13 FSGQQ-LKSVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYLGPFSGSPPSYLT 71
Query: 71 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 130
GEFPGDYGWDTAGLSADPETFAKNRELE+IH+RWAMLGALGCV PE+L+KNGVKFGEAVW
Sbjct: 72 GEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKFGEAVW 131
Query: 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYP 190
FKAG+QIF+EGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE DPLYP
Sbjct: 132 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEVEDPLYP 191
Query: 191 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 250
GG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP
Sbjct: 192 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPT 251
Query: 251 ANNAWAYATNFVPGK 265
NNAWAYATNF PGK
Sbjct: 252 VNNAWAYATNFTPGK 266
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/267 (75%), Positives = 226/267 (84%), Gaps = 9/267 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYL 58
T ++ S+FA R+ E + + R+TMR+T A Q S WYG DR YL
Sbjct: 5 TMSLSSSSFA-----RKMVENIPSSALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DHIADP+ NNAWA+ATNFVPGK
Sbjct: 240 LENLADHIADPINNNAWAFATNFVPGK 266
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/269 (76%), Positives = 226/269 (84%), Gaps = 13/269 (4%)
Query: 3 TSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPK 56
T ++ SAFAG+ L S F R+TMR+T A S WYG DR
Sbjct: 5 TMSLSSSAFAGKAVKNLPSSALFGE-------ARVTMRKTAAKAKPVSSGSPWYGSDRVL 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELE+IHSRWAMLGALGCVFPE
Sbjct: 58 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPE 117
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 178 AGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 238 GPLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/236 (85%), Positives = 218/236 (92%), Gaps = 3/236 (1%)
Query: 33 GRITMRRTVKS--APQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
GRITMR+T AP S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 30 GRITMRKTTTKKTAPSGSQWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPE 89
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 90 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 150 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP++NL DHIADPV NNAWA+ATNFVPGK
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLKNLADHIADPVNNNAWAFATNFVPGK 265
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/265 (77%), Positives = 222/265 (83%), Gaps = 11/265 (4%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGP 60
AI A G+ A + F GRITMR+T +A S WYG DR YLGP
Sbjct: 2 AITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPAASGSPWYGADRVLYLGP 54
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++
Sbjct: 55 LSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 114
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGP
Sbjct: 115 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP 174
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 175 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 234
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DHIADPV NNAWAYATNFVPGK
Sbjct: 235 NLADHIADPVNNNAWAYATNFVPGK 259
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/269 (76%), Positives = 227/269 (84%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-----APQSIWYGPDRPK 56
+T A+ +AFAG+ S+ F R+TMR+T + S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVL 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG FDPLGLADDP+ FA++KVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/267 (75%), Positives = 225/267 (84%), Gaps = 9/267 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYL 58
T ++ S+FA R+ E + + R+TMR+T A Q S WYG DR YL
Sbjct: 5 TMSLSSSSFA-----RKMVENIPSSALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+ +HAQSILAIWACQVVLMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DHIADP+ NNAWA+ATNFVPGK
Sbjct: 240 LENLADHIADPINNNAWAFATNFVPGK 266
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/245 (83%), Positives = 217/245 (88%), Gaps = 12/245 (4%)
Query: 33 GRITMR--------RT----VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWD 80
GRITM+ RT ++ A S WYGPDR KYLGPFS + PSYLTGEFPGDYGWD
Sbjct: 33 GRITMQDKTTSNRPRTTAGKLRPATSSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 92
Query: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSE 140
TAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+L++NGVKFGEAVWFKAG+QIFSE
Sbjct: 93 TAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFGEAVWFKAGSQIFSE 152
Query: 141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLA 200
GGLDYLGNPNLIHAQSILAIWA QVVLMG VEGYRI GGPLGE DPLYPG +FDPLGLA
Sbjct: 153 GGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEITDPLYPGNSFDPLGLA 212
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
DDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATN
Sbjct: 213 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 272
Query: 261 FVPGK 265
FVPGK
Sbjct: 273 FVPGK 277
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/237 (83%), Positives = 215/237 (90%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GRITMR+T SA S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 29 GRITMRKTAAKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 149 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAE 208
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAWA+ATNFVPGK
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAFATNFVPGK 265
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/268 (76%), Positives = 229/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT----VKSAPQSIWYGPDRPKY 57
+T A+ + AG+ A++ + +GV GR++MR+T + S WYGPDR KY
Sbjct: 4 STMALSSPSLAGK-AVKLAPSASELLGV---GRVSMRKTGGRPKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QV+LMG VEGYRI
Sbjct: 120 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 GGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAY TNFV GK
Sbjct: 240 PLENLADHLADPVNNNAWAYPTNFVSGK 267
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/267 (75%), Positives = 225/267 (84%), Gaps = 9/267 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYL 58
T ++ S FAG+ + V + R+TMR+T A Q + WYG DR YL
Sbjct: 5 TMSLSSSTFAGKAV-----KNVPLSALFGEARVTMRKTAAKAKQLSSSNPWYGADRVLYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 240 LENLADHIADPVNNNAWAFATNFVPGK 266
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/237 (83%), Positives = 215/237 (90%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GRITMR+T SA S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 28 GRITMRKTAAKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 148 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAE 207
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAWA+ATNFVPGK
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAFATNFVPGK 264
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/237 (85%), Positives = 214/237 (90%), Gaps = 5/237 (2%)
Query: 34 RITMRRTV-KSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
RITMR+T K P S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+LIHAQSILAIWA QVVLMG VEGYRI GGPLGE +DPLYPGGAFDPLGLADDP+ FAE
Sbjct: 149 PSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAE 208
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/237 (83%), Positives = 217/237 (91%), Gaps = 4/237 (1%)
Query: 33 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GR++MR+T K P S WYGPDR KYLGPFS + PSYLTGEF GDYGWDTAGLSADP
Sbjct: 30 GRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADP 89
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH+RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 90 ETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 149
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 150 PSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 209
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/273 (75%), Positives = 227/273 (83%), Gaps = 15/273 (5%)
Query: 1 MATSA--IQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSA----PQSIWYGP 52
MAT+A + S+FAG+ L S F R+TMR+T A S WYG
Sbjct: 1 MATTAMALSSSSFAGKAVKDLPSSALFGE-------ARVTMRKTAAKAKPVSSSSPWYGS 53
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DR YLGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC
Sbjct: 54 DRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 113
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
VFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VE
Sbjct: 114 VFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 173
Query: 173 GYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAI
Sbjct: 174 GYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 233
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/232 (84%), Positives = 213/232 (91%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+ T +++V ++ S WYGPDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 2 KATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 61
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIH
Sbjct: 62 NRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIH 121
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAIWACQV+LMG +EGYR+ GGPLGE DP+YPGG FDPLGLADDPD FAELKVKE
Sbjct: 122 AQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKE 181
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPV NNAWAYATNFVPGK
Sbjct: 182 IKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVNNNAWAYATNFVPGK 233
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/269 (75%), Positives = 225/269 (83%), Gaps = 13/269 (4%)
Query: 3 TSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPK 56
T ++ AFAG+ L S+ F R+TMR+T Q S WYG DR
Sbjct: 5 TMSLSSPAFAGKAVKNLPSSSLFGE-------ARVTMRKTAAKVKQVASGSPWYGSDRVL 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 58 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 177
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 178 AGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH++DPV NNAWA+ATNFVPGK
Sbjct: 238 GPLENLADHLSDPVNNNAWAFATNFVPGK 266
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/274 (75%), Positives = 230/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNL+HAQSILAI ACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLG ADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 216/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 124 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 183
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 184 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 239
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/274 (75%), Positives = 230/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNLIHAQSILAI ACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLG ADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/267 (75%), Positives = 224/267 (83%), Gaps = 9/267 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYL 58
T ++ S FAG+ + V + R+TMR+T A Q S WYG DR YL
Sbjct: 5 TMSLSSSTFAGKAV-----KNVPSSALFGEARVTMRKTTAKAKQVSSGSPWYGADRVLYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DHI DPV NNAWA+ATNFVPGK
Sbjct: 240 LENLGDHITDPVNNNAWAFATNFVPGK 266
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 216/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 2 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 61
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 62 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 121
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 122 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 181
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 182 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 237
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/232 (84%), Positives = 214/232 (92%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
R T + ++ S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 2 RKTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 61
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+H
Sbjct: 62 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE
Sbjct: 122 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 181
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 182 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 233
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 212/236 (89%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R+TMR+T A S WYG DR YLGP S Q PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 31 RVTMRKTAAKAKPVPSGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHI DPV NNAWA+ATNFVPGK
Sbjct: 211 KVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNNAWAFATNFVPGK 266
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 215/236 (91%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR+ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 124 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 183
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 184 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 239
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/274 (75%), Positives = 230/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNL+HAQSILAI ACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLG ADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/274 (75%), Positives = 230/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMR-----RTVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR ++V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMREATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNL+HAQSILAI ACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLG ADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/270 (77%), Positives = 225/270 (83%), Gaps = 16/270 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ----SIWYGPDRPK 56
AT A+ A AG+ A + E GRITMR++ K P S WYG DR
Sbjct: 4 ATMALSSPALAGKAAAKVFGE----------GRITMRKSAAKPKPAASSGSPWYGADRVL 53
Query: 57 YLGPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG LGCVFP
Sbjct: 54 YLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFP 113
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
E+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR
Sbjct: 114 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR 173
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I GGPLGE +DPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 174 IAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 233
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 234 KGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/269 (76%), Positives = 224/269 (83%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPK 56
+T A+ +AFAG+ S+ F R+TMR+T A S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSSFGE-------ARVTMRKTAAKAKPAAASGSPWYGPDRVL 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ F ELKVKELK GRLAM SMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DHIADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHIADPVNNNAWAYATNFVPGK 265
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/274 (75%), Positives = 230/274 (83%), Gaps = 9/274 (3%)
Query: 1 MATSAI-QQSAFAG--QTALRQSNEFVRKVGVADG-GRITMRR-----TVKSAPQSIWYG 51
MA+ I + AF G ++++ N + VG G R+TMR+ +V ++ S WYG
Sbjct: 5 MASCGIGSRCAFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYG 64
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 65 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALG 124
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNL+HAQSILAI ACQV+LMG +
Sbjct: 125 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAI 184
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYR+ GGPLGE DP+YPGG FDPLG ADDPD FAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 185 EGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 244
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
IVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 245 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 278
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/269 (74%), Positives = 231/269 (85%), Gaps = 10/269 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPK 56
+T A+ AF G+ A++ + +G GRI+MR++ P+++ WYGPDR K
Sbjct: 4 STMALSSPAFGGK-AVKLNPSTSDMIGE---GRISMRKSA-GKPKNVSSGSPWYGPDRVK 58
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE
Sbjct: 59 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPE 118
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+
Sbjct: 119 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 178
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 179 AGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAW +ATNFVPG
Sbjct: 239 GPLENLADHLADPVNNNAWNFATNFVPGN 267
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/268 (76%), Positives = 226/268 (84%), Gaps = 10/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
AT A+ A AG T ++ S + GRITMR+T +A S WYG DR Y
Sbjct: 5 ATMALSSPAMAG-TPVKAS-----RAAPFGEGRITMRKTAGKPKVAASSSPWYGSDRVLY 58
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 59 LGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 179 GGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 239 PLENLADHLADPVNNNAWAFATNFVPGK 266
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/247 (80%), Positives = 218/247 (88%), Gaps = 3/247 (1%)
Query: 22 EFVRKVGVADGGRITMRRTVKSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 78
+ R V GGRITMR++V A S WYG DR YLGP S PSYLTGEFPGDYG
Sbjct: 14 KLARAATVLGGGRITMRKSVAKASSSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYG 73
Query: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF 138
WDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIF
Sbjct: 74 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 133
Query: 139 SEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLG 198
SEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLG
Sbjct: 134 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 193
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
LA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+A
Sbjct: 194 LAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFA 253
Query: 259 TNFVPGK 265
TNFVPGK
Sbjct: 254 TNFVPGK 260
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 230/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ A++ S +G GR+TMR+TV K S WYG DR KYL
Sbjct: 4 STMALSSPAFAGK-AVKLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 179
Query: 179 -GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
PIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PIENLADHLADPVNNNAWAFATNFVPGK 267
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/269 (77%), Positives = 226/269 (84%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPK 56
+T A+ +AFAG+ S+ A R+TMR+T A S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSS-------AFEARVTMRKTAAKAKPAAASGSPWYGPDRVL 56
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 57 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAV FKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LLARNGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELK GRLAMFSMFGFFVQAIVTGK
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSMFGFFVQAIVTGK 236
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DHIADPV NNAWAYATNFVPGK
Sbjct: 237 GPLENLADHIADPVNNNAWAYATNFVPGK 265
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 227/273 (83%), Gaps = 15/273 (5%)
Query: 1 MATSA--IQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGP 52
MAT+A + S+FAG+ L S F R+TMR+T A S WYG
Sbjct: 22 MATTAMALSPSSFAGKAVKDLPSSALFGE-------ARVTMRKTAAKAKPVSSGSPWYGS 74
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DR YLGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC
Sbjct: 75 DRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 134
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
VFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VE
Sbjct: 135 VFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 194
Query: 173 GYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAI
Sbjct: 195 GYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 254
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VTGKGP+ENL DH++DPV NNAWA+ATNFVPGK
Sbjct: 255 VTGKGPLENLADHLSDPVNNNAWAFATNFVPGK 287
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/230 (85%), Positives = 213/230 (92%), Gaps = 2/230 (0%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
T ++ S S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNR
Sbjct: 5 TTKKVASSG--SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR 62
Query: 96 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
ELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQ
Sbjct: 63 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 122
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
SILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELK
Sbjct: 123 SILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 182
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
NGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 183 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/252 (78%), Positives = 219/252 (86%), Gaps = 5/252 (1%)
Query: 19 QSNEFVRKVGVADGGRITMRR-----TVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEF 73
Q+N+ + G R+TMR+ +V ++ S WYGPDR YLGPFS + PSYLTGEF
Sbjct: 27 QNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEF 86
Query: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKA 133
PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKA
Sbjct: 87 PGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKA 146
Query: 134 GAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA 193
GAQIFSEGGLDYLG+PNL+HAQSILAI ACQV+LMG +EGYR+ GGPLGE DP+YPGG
Sbjct: 147 GAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGN 206
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
FDPLG ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NN
Sbjct: 207 FDPLGWADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
Query: 254 AWAYATNFVPGK 265
AWAYATNFVPGK
Sbjct: 267 AWAYATNFVPGK 278
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/235 (83%), Positives = 215/235 (91%), Gaps = 4/235 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 2 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 61
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 62 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 121
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 122 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 181
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPG
Sbjct: 182 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 236
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 229/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ A+ S +G GR+TMR+TV K S WYG DR KYL
Sbjct: 4 STMALSSPAFAGK-AVNLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 179
Query: 179 -GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
PIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PIENLADHLADPVNNNAWAFATNFVPGK 267
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/273 (75%), Positives = 227/273 (83%), Gaps = 15/273 (5%)
Query: 1 MATSA--IQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGP 52
MAT+A + S+FAG+ L S F R+TMR+T A S WYG
Sbjct: 1 MATTAMALSPSSFAGKAVKDLPSSALFGE-------ARVTMRKTAAKAKPVSSGSPWYGS 53
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DR YLGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC
Sbjct: 54 DRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 113
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
VFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VE
Sbjct: 114 VFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 173
Query: 173 GYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAI
Sbjct: 174 GYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 233
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VTGKGP+ENL DH++DPV NNAWA+ATNFVPGK
Sbjct: 234 VTGKGPLENLADHLSDPVNNNAWAFATNFVPGK 266
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/235 (83%), Positives = 213/235 (90%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 70
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGGLDYLGNQS 130
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPL LADDP+ FAELK
Sbjct: 131 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELK 190
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 191 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 245
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/237 (84%), Positives = 213/237 (89%), Gaps = 5/237 (2%)
Query: 34 RITMRRTV-KSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
RITMR+T K P S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELE+IHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGN
Sbjct: 89 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+LIHAQSILAIWA QVVLMG VEGYRI GGPLGE +DPLYPGGAFDPLGLADDP+ FAE
Sbjct: 149 PSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAE 208
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LKVKE+K GRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 LKVKEIKKGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/268 (73%), Positives = 221/268 (82%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKY 57
AT A+ S FAG+ + + G+ TMR+T A S WYGPDR KY
Sbjct: 4 ATMALSSSTFAGKVVKLSPSS----SEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKY 59
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 60 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
++NGVKFGEAVW KAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+
Sbjct: 120 FARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVA 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLG +DPLYPGG+FDPLGLA+DP+ FAELKVKE KNGRLAMFSMFGFF+QAIVTGKG
Sbjct: 180 GGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ DPV NNAW+YATNFVP K
Sbjct: 240 PLENLADHLVDPVNNNAWSYATNFVPRK 267
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/236 (83%), Positives = 212/236 (89%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R+TMR+T A Q S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 31 RVTMRKTTAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIH RWAMLGALG +FPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 210
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHI DPV NNAWA+ATNFVPGK
Sbjct: 211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNNAWAFATNFVPGK 266
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/227 (85%), Positives = 214/227 (94%), Gaps = 2/227 (0%)
Query: 39 RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 98
+TV+S+ S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELE
Sbjct: 8 KTVQSS--SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 65
Query: 99 VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 158
VIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL
Sbjct: 66 VIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 125
Query: 159 AIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGR 218
AIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGR
Sbjct: 126 AIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 185
Query: 219 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW +ATNFVPGK
Sbjct: 186 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/235 (84%), Positives = 214/235 (91%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTV--KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR +MR+TV + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 29 GRASMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FA+NRELEVIHSRWAMLGALG VFPE LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 89 FARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP YPGG+FDPLGLADDP+ FAELK
Sbjct: 149 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPTYPGGSFDPLGLADDPEAFAELK 208
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKELKNGRLAMFS+FGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 VKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 263
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/268 (75%), Positives = 227/268 (84%), Gaps = 10/268 (3%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ +++ V GR+TMR+TV K S WYG DR KYL
Sbjct: 4 STMALSSPAFAGKAVKPAASD------VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 57
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 117
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 177
Query: 179 -GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 178 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 238 PLENLADHLADPVNNNAWAFATNFVPGK 265
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/232 (84%), Positives = 212/232 (91%), Gaps = 3/232 (1%)
Query: 37 MRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
MR+TV K+ S WYGPDR KYLGPFS + PSYL+GEFPGDYGWDTAGLSADPETFAK
Sbjct: 1 MRKTVAKPKTVSSSPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFAK 60
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
NRELEVIH RWAMLGALGCVFPE+LS+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+H
Sbjct: 61 NRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 120
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAIWA QV+LMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE
Sbjct: 121 AQSILAIWATQVILMGAVEGYRIAGGPLGEVEDPLYPGGSFDPLGLADDPEAFAELKVKE 180
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
+KNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 181 IKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 232
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/268 (76%), Positives = 228/268 (85%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ A+ S +G GR+TMR+TV K S WYG DR KYL
Sbjct: 4 STMALSSPAFAGK-AVNLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 179
Query: 179 G-PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
PLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 NEPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
PIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PIENLADHLADPVNNNAWAFATNFVPGK 267
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/235 (83%), Positives = 214/235 (91%), Gaps = 4/235 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 124 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEX 183
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPG
Sbjct: 184 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 238
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/235 (82%), Positives = 213/235 (90%), Gaps = 2/235 (0%)
Query: 33 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
GR++MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPET
Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 70
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQS 130
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPL LADDP+ FAELK
Sbjct: 131 LIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELK 190
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct: 191 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/230 (84%), Positives = 212/230 (92%), Gaps = 2/230 (0%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
T ++ S S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNR
Sbjct: 5 TTKKVASSG--SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR 62
Query: 96 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
ELEVIHSRWAMLGALG VFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQ
Sbjct: 63 ELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 122
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
SILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELK
Sbjct: 123 SILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 182
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
NGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 183 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/265 (77%), Positives = 226/265 (85%), Gaps = 8/265 (3%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYLGPF 61
A+ AFAG+ A+ S +G GR+TMR+TV K S WYG DR KYLGPF
Sbjct: 2 ALSSPAFAGK-AVNLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPF 57
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++N
Sbjct: 58 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GP 180
GVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G GP
Sbjct: 118 GVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGP 177
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 178 LGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 237
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 238 NLADHLADPVTNNAWAFATNFVPGK 262
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/267 (76%), Positives = 229/267 (85%), Gaps = 7/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLG 59
+T A+ AFAG+ A++ S G GR+TMR+TVK + P S WYG DR KYLG
Sbjct: 4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGE 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 LENLADHLADPVNNNAWAFATNFVPGK 266
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/265 (76%), Positives = 226/265 (85%), Gaps = 8/265 (3%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYLGPF 61
A+ AFAG+ A++ S +G GR+TMR+T K S WYG DR KYLGPF
Sbjct: 2 ALSSPAFAGK-AVKLSPAASEVLG---SGRVTMRKTTAKPKGPSGSPWYGSDRVKYLGPF 57
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++N
Sbjct: 58 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GP 180
GVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G GP
Sbjct: 118 GVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGP 177
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 178 LGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 237
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 238 NLADHLADPVTNNAWAFATNFVPGK 262
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/267 (76%), Positives = 229/267 (85%), Gaps = 7/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLG 59
+T A+ AFAG+ A++ S G GR+TMR+TVK + P S WYG DR KYLG
Sbjct: 4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGE 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEAEDLLYPGGSFDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 LENLADHLADPVNNNAWAFATNFVPGK 266
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/264 (76%), Positives = 224/264 (84%), Gaps = 6/264 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
AT A+ +FAGQ A++ S ++ GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC FPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVP 263
ENL DH+ADPV NNA P
Sbjct: 240 ENLADHLADPVNNNACPTPQTLSP 263
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/238 (82%), Positives = 212/238 (89%), Gaps = 5/238 (2%)
Query: 33 GRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
GR+TMR++ S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 28 GRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSAD 87
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 88 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 147
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+LIHAQSILAIW CQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FA
Sbjct: 148 NPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/266 (75%), Positives = 223/266 (83%), Gaps = 5/266 (1%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLG 59
+T A+ + AG+ + +G GRI+MR+T+ + S WYG DR KYLG
Sbjct: 3 STMALSSPSLAGKAVKLGPSAASELLG---NGRISMRKTIAKPVSSGSPWYGADRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAGAQIFS+GGLDYLGN +L+HAQSILAIWA QVVLMG VEGYRI GG
Sbjct: 120 RNGVKFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIAGG 179
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL D +ADPV NNAW YATNFVPGK
Sbjct: 240 ENLADPLADPVNNNAWPYATNFVPGK 265
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/241 (82%), Positives = 216/241 (89%), Gaps = 4/241 (1%)
Query: 29 VADGGRITMRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 85
V GR+TMR+TV K S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLS
Sbjct: 9 VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLS 68
Query: 86 ADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDY 145
ADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDY
Sbjct: 69 ADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDY 128
Query: 146 LGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPD 204
LGNP+L+HAQSILAIWA QV+LMG VEGYR+ G GPLGE D LYPGG+FDPLGLA DP+
Sbjct: 129 LGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPE 188
Query: 205 QFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPG
Sbjct: 189 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPG 248
Query: 265 K 265
K
Sbjct: 249 K 249
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/238 (84%), Positives = 213/238 (89%), Gaps = 6/238 (2%)
Query: 34 RITMRRTV-KSAPQ----SIWYGPDRPKYLGPFS-EQTPSYLTGEFPGDYGWDTAGLSAD 87
RITMR+T K P S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSAD 88
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 89 PETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 148
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+LIHAQSILAIWA QVVLMG VEGYRI GGPLGE +DPLYPGGAFDPLGLADDP+ A
Sbjct: 149 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEACA 208
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVK++KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 209 ELKVKKIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 266
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/232 (83%), Positives = 212/232 (91%), Gaps = 4/232 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 124 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 183
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNF
Sbjct: 184 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 235
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/233 (83%), Positives = 211/233 (90%), Gaps = 4/233 (1%)
Query: 37 MRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
MR+T A S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA
Sbjct: 1 MRKTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
KNRELE+IHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+
Sbjct: 61 KNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 120
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
HAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVK
Sbjct: 121 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVK 180
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 181 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 233
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/268 (75%), Positives = 227/268 (84%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ A++ S +G GR+TMR+TV K S WYG +R KYL
Sbjct: 4 STMALSSPAFAGK-AVKLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSERVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NREL+VIH RWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 179
Query: 179 -GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKE+KNGRLAMFSMFGFF QAIVTGKG
Sbjct: 180 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFAQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAFATNFVPGK 267
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/241 (81%), Positives = 215/241 (89%), Gaps = 4/241 (1%)
Query: 29 VADGGRITMRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 85
V GR+TMR+TV K S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLS
Sbjct: 5 VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 64
Query: 86 ADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDY 145
ADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDY
Sbjct: 65 ADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDY 124
Query: 146 LGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPD 204
LGNP+L+HAQSILAIWA QV+LMG VEGYR+ G GPLGE D LYPGG+FDPLGLA DP+
Sbjct: 125 LGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPE 184
Query: 205 QFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPG
Sbjct: 185 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 244
Query: 265 K 265
K
Sbjct: 245 K 245
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/267 (76%), Positives = 226/267 (84%), Gaps = 7/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLG 59
+T A+ A G+ A++ S G GRITMR+ K + P S WYG DR KYLG
Sbjct: 4 STMALSSPALTGK-AVKLSPAASEVFGT---GRITMRKASKPTGPSGSPWYGSDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
+NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 LENLADHLADPVNNNAWAFATNFVPGK 266
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/266 (76%), Positives = 226/266 (84%), Gaps = 7/266 (2%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLGP 60
T A+ A AG+ A++ S G GR+TMR+ K + P S WYG DR KYLGP
Sbjct: 5 TMALYSPALAGK-AVKLSPAASEVFGT---GRVTMRKASKPTGPSGSPWYGSDRVKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G G
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNG 180
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 241 ENLSDHLADPVNNNAWAFATNFVPGK 266
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/236 (80%), Positives = 208/236 (88%), Gaps = 4/236 (1%)
Query: 34 RITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R+TMR+T A Q S WYG DR YLGP S + PSYLTG+FPGDYGWDTAGLSADPE
Sbjct: 31 RVTMRKTAAKAKQVSSSSPWYGADRVLYLGPLSREPPSYLTGDFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TF+KNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 91 TFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG FDPLGLA+ P F L
Sbjct: 151 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGRFDPLGLAERPQAFDAL 210
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGF VQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 211 KVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 266
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/267 (75%), Positives = 226/267 (84%), Gaps = 7/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLG 59
+T A+ A G+ A++ S G GRITMR+ K + P S WYG DR KYLG
Sbjct: 4 STMALSSPALTGK-AVKLSPAASEVFGT---GRITMRKASKPTGPSGSPWYGSDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
+NGV+FGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 RNGVEFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 LENLADHLADPVNNNAWAFATNFVPGK 266
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/267 (74%), Positives = 222/267 (83%), Gaps = 9/267 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYL 58
T ++ S+FAG+ + + +G A R+ MR+T A Q S WYG DR YL
Sbjct: 5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVLMG VEGYRI G
Sbjct: 120 ARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLA+ P FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+E+L DHIADPV NNAW ATNFVPGK
Sbjct: 240 LEDLADHIADPVNNNAWLIATNFVPGK 266
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/230 (83%), Positives = 211/230 (91%), Gaps = 2/230 (0%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
T ++ S+ S W+GPD KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNR
Sbjct: 1 TTKKVASSS--SPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNR 58
Query: 96 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
ELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQ
Sbjct: 59 ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 118
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
SILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+ P+ FAELKVKELK
Sbjct: 119 SILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELK 178
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
NGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 179 NGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/231 (82%), Positives = 211/231 (91%), Gaps = 4/231 (1%)
Query: 35 ITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
++MR+T +A S WYGPDR KYLGPFS + PSYLTGEF GDYGWDTAGLSADPET
Sbjct: 1 VSMRKTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPET 60
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIH+RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+
Sbjct: 61 FAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 120
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
L+HAQSILAIWA QV+LMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELK
Sbjct: 121 LVHAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 180
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNF
Sbjct: 181 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 231
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/267 (73%), Positives = 220/267 (82%), Gaps = 6/267 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVAD-GGRITMRRTVKSAP--QSIWYGPDRPKYL 58
A + + AFAGQ + +F R++ + G R+ MRR AP S WYGPDR KYL
Sbjct: 3 AMAKLSSPAFAGQMV---NGDFARQLRALNVGERVNMRRGATKAPVSSSPWYGPDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFP G DPETFAKNRELEVIH+RWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
S+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ G
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF+VQAIVTGKGP
Sbjct: 180 GPLGEITDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 240 LENLADHLADPVNNNAWAYATNFVPGK 266
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/238 (80%), Positives = 208/238 (87%), Gaps = 5/238 (2%)
Query: 33 GRITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
GR+TMR++ S WYG DR YLGP S + PSYLTGEF GDYGWDTAGLSAD
Sbjct: 28 GRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSGEPPSYLTGEFSGDYGWDTAGLSAD 87
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 88 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 147
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP+LIHAQSILAIW CQVV MG VEGYR+ GGPLGE +DPLYPGG+ DPLGLADDP+ FA
Sbjct: 148 NPSLIHAQSILAIWGCQVVFMGAVEGYRVAGGPLGEVVDPLYPGGSLDPLGLADDPEAFA 207
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKE+KNGRLAM SMFGFFVQAIVTGKGP+EN+ DH+ADPV NNAWAYATNFVPGK
Sbjct: 208 ELKVKEIKNGRLAMLSMFGFFVQAIVTGKGPLENITDHLADPVNNNAWAYATNFVPGK 265
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/268 (74%), Positives = 225/268 (83%), Gaps = 8/268 (2%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ A++ S +G GR+TMR+TV K S WYG +R KYL
Sbjct: 4 STMALSSPAFAGK-AVKLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSERVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTG+FPGDYGWDTAGLSA PETF +NRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-G 177
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVPG 179
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GPLGE D LYPGG+FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 180 DGPLGEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 240 PLENLADHLADPVNNNAWAFATNFVPGK 267
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/233 (83%), Positives = 211/233 (90%), Gaps = 4/233 (1%)
Query: 37 MRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
MR+TV K S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+
Sbjct: 1 MRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAR 60
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+H
Sbjct: 61 NRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVH 120
Query: 154 AQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
AQSILAIWA QV+LMG VEGYR+ G GPLGE D LYPGG+FDPLGLA DP+ FAELKVK
Sbjct: 121 AQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 180
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 181 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 233
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/216 (87%), Positives = 204/216 (94%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYGP+R KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAM
Sbjct: 5 SPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 64
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
LGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+
Sbjct: 65 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVL 124
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
LMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG
Sbjct: 125 LMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 184
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
FFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFV
Sbjct: 185 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFV 220
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/254 (78%), Positives = 212/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG + +GV G R+TMR++ SA S WYGPDR
Sbjct: 3 IGSCAFAGGKISLLKPHTNQLLGVGAGVHGESRVTMRKSAAKKSFASASPSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L+KNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 215/254 (84%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAG--QTALRQSNEFVRKVGVADGG--RITMRRT-----VKSAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR++ V SA S WYGPDR
Sbjct: 3 IGSCAFAGGQXSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSVASASPSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/254 (78%), Positives = 217/254 (85%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQ--TALR-QSNEFV-RKVGVADGGRITMRRT-----VKSAPQSIWYGPDRPK 56
I AFAG ++L+ +N+ V GV R+TMR++ V SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLVGVGAGVHGESRVTMRKSATKKSVVSASPSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/216 (85%), Positives = 202/216 (93%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA
Sbjct: 10 SSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 69
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV
Sbjct: 70 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 129
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
+LMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLA+DP+ FAELKVKELKNGRLAMFSMF
Sbjct: 130 ILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMF 189
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
GFFVQAIVTGKGP+ENL DH+ADPV NNAWA+
Sbjct: 190 GFFVQAIVTGKGPLENLADHLADPVNNNAWAFCHKL 225
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 215/254 (84%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAG--QTALRQSNEFVRKVGVADGG--RITMRRT-----VKSAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR++ V SA S WYGPDR
Sbjct: 3 IGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSVASASPSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/254 (77%), Positives = 212/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG + +GV G R+TMR++ SA S WYGPDR
Sbjct: 3 IGSCAFAGGKISLLKPHTNQLLGVGAGVHGESRVTMRKSAAKKSFASASPSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L+KNGVKFGEAVWFKAGAQIFSEGGLD+LGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLAKNGVKFGEAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/228 (83%), Positives = 204/228 (89%), Gaps = 5/228 (2%)
Query: 28 GVADGGRITMRRT-----VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
GV R+TMR++ V SA S WYGPDR YLGPFS + PSYLTGEFPGDYGWDTA
Sbjct: 26 GVHGESRVTMRKSATKKSVVSASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTA 85
Query: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
GLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGG
Sbjct: 86 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 145
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 202
LDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADD
Sbjct: 146 LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADD 205
Query: 203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 250
PD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV
Sbjct: 206 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 253
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/254 (77%), Positives = 213/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR+ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/254 (76%), Positives = 212/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+ MR+ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVMMRKATTKKVSVSASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/254 (76%), Positives = 212/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR+ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLG DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGXVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/269 (73%), Positives = 223/269 (82%), Gaps = 21/269 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPK 56
+T A+ S+ AGQ A++ + ++GV GR++MR+T AP+++ WYGPDR K
Sbjct: 4 STMALSSSSLAGQ-AMKLAPS-TPELGV---GRVSMRKT---APKTVSSGSPWYGPDRVK 55
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEF GLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 56 YLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 107
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI
Sbjct: 108 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 167
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDP+ AELKVKELKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 168 AGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGK 227
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ADPV NNAWAYAT PGK
Sbjct: 228 GPLENLADHLADPVNNNAWAYATKLCPGK 256
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/254 (76%), Positives = 212/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR+ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPL LADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLRLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/254 (76%), Positives = 212/254 (83%), Gaps = 9/254 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVKS-----APQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR+ A S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVPASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPL E DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLREVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIADPV 250
GPIENL DH+ADPV
Sbjct: 243 GPIENLADHLADPV 256
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/232 (80%), Positives = 204/232 (87%), Gaps = 3/232 (1%)
Query: 36 TMRRTVK--SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+MRRT K SAP S+WYGPDRP++LGPFS TPSYLTGEFPGDYGWDTAGLSADPETF +
Sbjct: 22 SMRRTQKKGSAPDSVWYGPDRPQFLGPFSGDTPSYLTGEFPGDYGWDTAGLSADPETFRR 81
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
RELE+IH+RWAMLGALGCV PEILSK GV FGE+VWFKAG+QIF EGGLDYLGN NL+
Sbjct: 82 YRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLV 141
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
HAQSILAI CQVVLMG +E YR+ GGPLGEGLDPLYPG FDPLGLADDPD FAELK+K
Sbjct: 142 HAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIK 201
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
E+KNGRLAMFSMFGFFVQA+VTGKGPIEN +H+ADP + NAW YAT FVPG
Sbjct: 202 EIKNGRLAMFSMFGFFVQAVVTGKGPIENWAEHVADPFSVNAWNYATKFVPG 253
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/251 (77%), Positives = 212/251 (84%), Gaps = 9/251 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ N + VG G R+TMR++ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFF QAIVTGK
Sbjct: 183 AGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGK 242
Query: 237 GPIENLYDHIA 247
GPIENL DH+A
Sbjct: 243 GPIENLADHLA 253
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/225 (82%), Positives = 200/225 (88%), Gaps = 4/225 (1%)
Query: 34 RITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R+ MR+T A Q S WYG DR YLG S + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 26 RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGSLSGEPPSYLTGEFPGDYGWDTAGLSADPE 85
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWF AG+QIFSEGGLDYLGNP
Sbjct: 86 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFMAGSQIFSEGGLDYLGNP 145
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 146 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAEL 205
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNA
Sbjct: 206 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 250
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/206 (89%), Positives = 196/206 (95%)
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GG
Sbjct: 61 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 120
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
PLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 121 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 180
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 181 ENLADHLADPVNNNAWAYATNFVPGK 206
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/268 (72%), Positives = 213/268 (79%), Gaps = 11/268 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKY 57
AT AI A G+ A + F GRITMR+T K P S WYG DR Y
Sbjct: 4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLY 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+ LGCVFPE+
Sbjct: 57 LGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPEL 116
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVLMG VEGY +
Sbjct: 117 LARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVA 176
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GG LGE +DPLY GG+FDPLGL DDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 177 GGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
PIENL DH+ DPV NNAWAYATNFVPGK
Sbjct: 237 PIENLADHLTDPVNNNAWAYATNFVPGK 264
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/251 (76%), Positives = 210/251 (83%), Gaps = 9/251 (3%)
Query: 6 IQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR+ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIA 247
GPIENL DH+A
Sbjct: 243 GPIENLADHLA 253
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/251 (77%), Positives = 211/251 (84%), Gaps = 9/251 (3%)
Query: 6 IQQSAFAG--QTALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYGPDRPK 56
I AFAG ++L+ + VG G R+TMR++ SA S WYGPDR
Sbjct: 3 IGSCAFAGGQLSSLKPHTNQLLGVGAGIHGESRVTMRKSATKKSFASASPSPWYGPDRVL 62
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 122
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI
Sbjct: 123 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 182
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 183 AGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 237 GPIENLYDHIA 247
GPIENL DH+A
Sbjct: 243 GPIENLADHLA 253
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/251 (76%), Positives = 210/251 (83%), Gaps = 9/251 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 3 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYG 62
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG
Sbjct: 63 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 122
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 123 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 182
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 183 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 242
Query: 232 IVTGKGPIENL 242
IVTGKGPIENL
Sbjct: 243 IVTGKGPIENL 253
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/251 (77%), Positives = 210/251 (83%), Gaps = 9/251 (3%)
Query: 1 MATSAIQQSAFAG--QTALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MAT I AFAG ++L+ + VG G R+TMR++ SA S WYG
Sbjct: 3 MATCGIGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSFASASPSPWYG 62
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 63 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 122
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG V
Sbjct: 123 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAV 182
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 183 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 242
Query: 232 IVTGKGPIENL 242
IVTGKGPIENL
Sbjct: 243 IVTGKGPIENL 253
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/250 (74%), Positives = 212/250 (84%), Gaps = 2/250 (0%)
Query: 16 ALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-WYGPDRPKYLGPFSEQ-TPSYLTGEF 73
A+ S + ++ A G + T + K AP I WYGP+R K+LGP+SE TP+YLTGEF
Sbjct: 4 AVTFSRKALQVSAKATGKKGTSKTVAKPAPSGIEWYGPNRAKWLGPYSENATPAYLTGEF 63
Query: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKA 133
PGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGCV PE+LSKNGV+FGEAVWFKA
Sbjct: 64 PGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQFGEAVWFKA 123
Query: 134 GAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA 193
GAQIF EGGLDYLGNP+L+HAQ+I+A ACQV+LMG VEGYR+ GGP GEGLDPLYPG +
Sbjct: 124 GAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGES 183
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+A+P NN
Sbjct: 184 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNN 243
Query: 254 AWAYATNFVP 263
A+A+AT F P
Sbjct: 244 AFAFATKFTP 253
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/251 (76%), Positives = 209/251 (83%), Gaps = 9/251 (3%)
Query: 1 MATSAIQQSAFAGQ--TALRQSNEFVRKVGVADGG--RITMRRTVK-----SAPQSIWYG 51
MA+ I AFAG ++L+ + VG G R+TMR+ SA S WYG
Sbjct: 3 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSASASTSPWYG 62
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALG
Sbjct: 63 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 122
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
CVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG V
Sbjct: 123 CVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 182
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
EGYRI GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 183 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 242
Query: 232 IVTGKGPIENL 242
IVTGKGPIENL
Sbjct: 243 IVTGKGPIENL 253
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/194 (93%), Positives = 189/194 (97%)
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 131
FPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWF
Sbjct: 2 RFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWF 61
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+GGGPLGEGLDPLYPG
Sbjct: 62 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPG 121
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
GAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADP A
Sbjct: 122 GAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTA 181
Query: 252 NNAWAYATNFVPGK 265
NNAWAYATNFVPGK
Sbjct: 182 NNAWAYATNFVPGK 195
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/249 (74%), Positives = 207/249 (83%), Gaps = 3/249 (1%)
Query: 19 QSNEFVRKVGVADGGRITMRRTVK--SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGD 76
+N FV V +MRRT K SAP S+WYGPDRP++LGPFS PSYLTGEFPGD
Sbjct: 5 SANTFVGSKPVNKKMVTSMRRTQKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGEFPGD 64
Query: 77 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGA 135
YGWDTAGLSADPETF + RE E+IH+RWAMLGALGCV PEILSK GV FGE+VWFKAG+
Sbjct: 65 YGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGS 124
Query: 136 QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 195
QIF EGGLDYLGN NL+HAQSILAI CQVVLMG +E YR+ GGPLGEGLDPLYPG FD
Sbjct: 125 QIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPLYPGDKFD 184
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW 255
PLGLADDPD FAELK+KE+KNGRLAMFSMFGF+VQA+VTGKGPIEN +H+A+P + NAW
Sbjct: 185 PLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIENWAEHVANPFSVNAW 244
Query: 256 AYATNFVPG 264
YAT FVPG
Sbjct: 245 NYATKFVPG 253
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/217 (85%), Positives = 200/217 (92%), Gaps = 1/217 (0%)
Query: 47 SIW-YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S W +G +R YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWA
Sbjct: 19 STWCFGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 78
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+LS+NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV
Sbjct: 79 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 138
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
+LMG VEGYR+ GGPLG+ PLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct: 139 ILMGAVEGYRVAGGPLGKVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 198
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
GFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFV
Sbjct: 199 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV 235
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/235 (76%), Positives = 202/235 (85%), Gaps = 5/235 (2%)
Query: 34 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
++ RRTVK S P S WYGP+RP +LG F+ + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 21 KVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETF + RELE+IH+RWAMLGALGC+FPE+L GV FGEAVWFKAGAQIF EGGLDYLGN
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGN 140
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
PNL+HAQSILAI QV+LMG +EGYR+ GGPLGEGLD LYPGG+FDPLGLADDPD FAE
Sbjct: 141 PNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAE 200
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+A+P NNA+AYAT F P
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTP 255
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/206 (87%), Positives = 194/206 (94%), Gaps = 1/206 (0%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MATS IQQSAFAGQT L+ NE VRKVG +GGR++MRRT+KSAP+SIWYGPDRPKYLGP
Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGP 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+K
Sbjct: 60 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+GGGP
Sbjct: 120 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP 179
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQF 206
LGEGLD LYPGGAFDPLGLA+DP+ F
Sbjct: 180 LGEGLDQLYPGGAFDPLGLAEDPEAF 205
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/248 (77%), Positives = 210/248 (84%), Gaps = 8/248 (3%)
Query: 6 IQQSAFAGQ--TALR-QSNEFV-RKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
I AFAG ++L+ SN+ + GV R+TMR++ S S WYGPDR Y
Sbjct: 3 IGSCAFAGGKISSLKPHSNQLLGVGAGVHGESRVTMRKSATKKFASESPSPWYGPDRVLY 62
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+
Sbjct: 63 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 122
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI
Sbjct: 123 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIA 182
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 183 GGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 238 PIENLYDH 245
PIENL DH
Sbjct: 243 PIENLADH 250
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/235 (76%), Positives = 202/235 (85%), Gaps = 5/235 (2%)
Query: 34 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
++ RRTVK S P S WYGPDRP +LG F+ + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 21 KVEARRTVKPAAKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETF + RELE+IH+RWAMLGALGC+FPE+L GV FGE+VWFKAGAQIF EGGLDYLGN
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGESVWFKAGAQIFQEGGLDYLGN 140
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P+L+HAQSILAI QV+LMG +EGYR+ GGPLGEGLD LYPGG+FDPLGLADDPD FAE
Sbjct: 141 PSLVHAQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAE 200
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+A+P NNA+AYAT F P
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNNAFAYATKFTP 255
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/240 (73%), Positives = 206/240 (85%), Gaps = 5/240 (2%)
Query: 29 VADGGRITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 83
+A ++ RRTVK S P S WYGP+RP +LG F+ + PSYLTGEFPGDYGWDTAG
Sbjct: 15 LASTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAG 74
Query: 84 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGL 143
LSADPETF + RELE+IH+RWAMLGALGC+ PE+L+K+G +FGEAVWFKAGAQIFSEGGL
Sbjct: 75 LSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGL 134
Query: 144 DYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDP 203
DYLGNP+L+HAQ+I+A A QV+LMG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDP
Sbjct: 135 DYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDP 194
Query: 204 DQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
D FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPI+NL DH+++P NNA+A+AT F P
Sbjct: 195 DTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTP 254
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/252 (71%), Positives = 213/252 (84%), Gaps = 4/252 (1%)
Query: 16 ALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI---WYGPDRPKYLGPFSEQ-TPSYLTG 71
AL S + ++ A G + T + KSAP S +YGP+R K+LGP+SE TP+YLTG
Sbjct: 4 ALSFSRKALQVSAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTG 63
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 131
EFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC+ PE+L+KNG +FGEAVWF
Sbjct: 64 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQFGEAVWF 123
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAGAQIFSEGGLDYLGNP+L+HAQ+I+A ACQV+LMG VEGYR+ GGP GEGLDPLYPG
Sbjct: 124 KAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPG 183
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+++P
Sbjct: 184 ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTV 243
Query: 252 NNAWAYATNFVP 263
NNA+A+AT F P
Sbjct: 244 NNAFAFATKFTP 255
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/235 (76%), Positives = 201/235 (85%), Gaps = 5/235 (2%)
Query: 34 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
R+ RRTVK S P S WYGP+RP +LG F+ + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 14 RVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 73
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETF + RELE+IH+RWAMLGALGC+FPE+L GV FGEAVWFKAGAQIF EGGLDYLGN
Sbjct: 74 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGN 133
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
NL+HAQSILAI QV+LMG +EGYR+ GGPLGEGLD LYPGG+FDPLGLADDPD F+E
Sbjct: 134 SNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFSE 193
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+A+P NNA+AYAT F P
Sbjct: 194 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTP 248
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/220 (83%), Positives = 195/220 (88%), Gaps = 5/220 (2%)
Query: 28 GVADGGRITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
GV R+TMR+ SA S WYGPDR YLGPFS + PSYLTGEFPGDYGWDTA
Sbjct: 13 GVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTA 72
Query: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
GLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGG
Sbjct: 73 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 132
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 202
LDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADD
Sbjct: 133 LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADD 192
Query: 203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
PD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct: 193 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 232
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/191 (94%), Positives = 187/191 (97%)
Query: 75 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134
GDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEIL+KNGVKFGEAVWFKAG
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAF 194
AQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+GGGPLGEGLD +YPGGAF
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAF 120
Query: 195 DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
DPLGLADDPD AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNA
Sbjct: 121 DPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNA 180
Query: 255 WAYATNFVPGK 265
WAYATNFVPG
Sbjct: 181 WAYATNFVPGN 191
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/216 (81%), Positives = 197/216 (91%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGCV PE+LSKNGV+FGEAVWFKAGAQIF EGGLDYLGNP+L+HAQ+I+A ACQV+L
Sbjct: 97 GALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPIENL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/216 (81%), Positives = 197/216 (91%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+LSKNGV+FGEAVWFKAGAQIF EGGLDYLGNP+L+HAQ+I+A ACQV+L
Sbjct: 97 GALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPIENL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/216 (81%), Positives = 197/216 (91%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+LSKNGV+FGEAVWFKAGAQIF EGGLDYLGNP+L+HAQ+I+A ACQV+L
Sbjct: 97 GALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPIENL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/216 (81%), Positives = 197/216 (91%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+LSKNGV+FGEAVWFKAGAQIF EGGLDYLGNP+L+HAQ+I+A ACQV+L
Sbjct: 97 GALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPIENL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/251 (72%), Positives = 208/251 (82%), Gaps = 10/251 (3%)
Query: 14 QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGE 72
++A+R S VR R+ R ++ WYGPDRPK+LGPFSE TP+YLTGE
Sbjct: 6 KSAVRSS---VRPTVSGRSARVVPRAAIE------WYGPDRPKFLGPFSEGDTPAYLTGE 56
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
FPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC+ PE+L+KNG+ FGEAVWFK
Sbjct: 57 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFK 116
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGG 192
AGAQIF+EGGL+YLGN NLIHAQSI+A A QVV+MG E YR GGPLGEGLDPL+PGG
Sbjct: 117 AGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGG 176
Query: 193 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
AFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPI+NL DH+A+P A
Sbjct: 177 AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAV 236
Query: 253 NAWAYATNFVP 263
NA+AYAT F P
Sbjct: 237 NAFAYATKFTP 247
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/256 (73%), Positives = 214/256 (83%), Gaps = 6/256 (2%)
Query: 13 GQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 72
GQ+ LR +NE +KVG ++ R+ MR + KS+ S+WYGPDRP +LGPFS TPSYL GE
Sbjct: 14 GQSLLRPANELAQKVG-SNQARVVMRGS-KSSSGSMWYGPDRPLFLGPFSGNTPSYLKGE 71
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWF 131
FPGDYGWDTAGLSADPE+FA+NR LE+IH RWAMLGALGC+ PE+L K + V E VWF
Sbjct: 72 FPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWF 131
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYP 190
KAGAQIFS+GGLDYLGNPNLIHAQSILA+WA QVVLMG VE YR G P +GEG D LYP
Sbjct: 132 KAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTNGLPGVGEGGD-LYP 190
Query: 191 GGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
GG FDPLGLADDP+ AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A+P
Sbjct: 191 GGKYFDPLGLADDPETLAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLANP 250
Query: 250 VANNAWAYATNFVPGK 265
V+NNAWA+ATNF PG
Sbjct: 251 VSNNAWAFATNFTPGN 266
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 210/257 (81%), Gaps = 12/257 (4%)
Query: 10 AFAGQTALRQSNEFVRKVGVAD-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPS 67
A ++ALR S VR VA R+ R ++ WYGPDRPK+LGPFSE TP+
Sbjct: 2 AVVAKSALRSS---VRPATVASRAARVVPRAAIE------WYGPDRPKFLGPFSEGDTPA 52
Query: 68 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFG 126
YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGCV PE+LSK GV FG
Sbjct: 53 YLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFG 112
Query: 127 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLD 186
EAVWFKAGAQIF+EGGL+YLGN NL+HAQSI+A A QVV+MG E YR GGPLGEGLD
Sbjct: 113 EAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLD 172
Query: 187 PLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
PL+PGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+
Sbjct: 173 PLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHL 232
Query: 247 ADPVANNAWAYATNFVP 263
A+P A NA+AYAT F P
Sbjct: 233 ANPSAVNAFAYATKFTP 249
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/235 (74%), Positives = 201/235 (85%), Gaps = 4/235 (1%)
Query: 33 GRITMRRTVKSAPQSI----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
G TMR T+ QSI WYGPDR KY+GPFS QTPSYLTGEFPGDYGWD+AGLSA+P
Sbjct: 32 GGFTMRSTLSRPRQSITGGPWYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSAGLSAEP 91
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH+RWAMLG +GC+ PE+L +NGVK GEAVWFKAG+QIF + GL+YLG+
Sbjct: 92 ETFAKNRELEVIHARWAMLGTVGCIVPELLERNGVKIGEAVWFKAGSQIFRDEGLNYLGD 151
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
P LIHAQ+ILA+ A QV+LMG +EGYRI GGPLGE DPLYPGG FDPL LADDP++FA
Sbjct: 152 PKLIHAQNILAVLAAQVILMGAIEGYRISGGPLGEPTDPLYPGGNFDPLHLADDPEEFAI 211
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
LKVKE+KNGRLAMF+M GF+VQAIVTGKGP+ENLYDH+ADP NNAWA+AT F P
Sbjct: 212 LKVKEIKNGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNNAWAFATAFDP 266
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/253 (74%), Positives = 209/253 (82%), Gaps = 12/253 (4%)
Query: 14 QTALRQSNEFVRKVGVAD-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTG 71
++A R S VR V VA R+ R ++ WYGPDRPK+LGPFSE TP+YLTG
Sbjct: 6 KSAARSS---VRPVTVASRAARVVPRAAIE------WYGPDRPKFLGPFSEGDTPAYLTG 56
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVW 130
EFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGCV PE+LSK GV FGEAVW
Sbjct: 57 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVW 116
Query: 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYP 190
FKAGAQIF+EGGL+YLGN NL+HAQSI+A A QVV+MG E YR GGPLGEGLDPL+P
Sbjct: 117 FKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHP 176
Query: 191 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 250
GGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+A+P
Sbjct: 177 GGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPS 236
Query: 251 ANNAWAYATNFVP 263
A NA+AYAT F P
Sbjct: 237 AVNAFAYATKFTP 249
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/251 (72%), Positives = 208/251 (82%), Gaps = 10/251 (3%)
Query: 14 QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGE 72
++A+R S VR R+ R ++ WYGPDRPK+LGPFSE TP+YLTGE
Sbjct: 3 KSAVRSS---VRPTVSGRSARVVPRAAIE------WYGPDRPKFLGPFSEGDTPAYLTGE 53
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
FPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC+ PE+L+KNG+ FGEAVWFK
Sbjct: 54 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFK 113
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGG 192
AG+QIF+EGGL+YLGN NL+HAQSI+A A QVV+MG E YR GGPLGEGLDPL+PGG
Sbjct: 114 AGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGG 173
Query: 193 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
AFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPI+NL DH+A+P A
Sbjct: 174 AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAV 233
Query: 253 NAWAYATNFVP 263
NA+AYAT F P
Sbjct: 234 NAFAYATKFTP 244
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/252 (71%), Positives = 211/252 (83%), Gaps = 4/252 (1%)
Query: 16 ALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI---WYGPDRPKYLGPFSEQ-TPSYLTG 71
AL S + ++ A G + T + K AP S +YGP+R K+LGP+SE TP+YLTG
Sbjct: 4 ALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTG 63
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 131
EFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC+ PE+L+K+G +FGEAVWF
Sbjct: 64 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWF 123
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+LMG VEGYR+ GGP GEGLDPLYPG
Sbjct: 124 KAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPG 183
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPI+NL DH+++P
Sbjct: 184 ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTV 243
Query: 252 NNAWAYATNFVP 263
NNA+A+AT F P
Sbjct: 244 NNAFAFATKFTP 255
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/252 (73%), Positives = 207/252 (82%), Gaps = 11/252 (4%)
Query: 14 QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGE 72
++A+R S VR + R+ R ++ WYGPDRPK+LGPFSE PSYLTGE
Sbjct: 6 KSAVRSS---VRPTVASRAARVVPRAAIE------WYGPDRPKFLGPFSEGDVPSYLTGE 56
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWF 131
FPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGCV PE+LSK GV FGEAVWF
Sbjct: 57 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWF 116
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAGAQIF+EGGL+YLGN NL+HAQSI+A A QVV+MG E YR GGPLGEGLDPL+PG
Sbjct: 117 KAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPG 176
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
GAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+A+P A
Sbjct: 177 GAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSA 236
Query: 252 NNAWAYATNFVP 263
NA+AYAT F P
Sbjct: 237 VNAFAYATKFTP 248
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/216 (79%), Positives = 197/216 (91%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+KNG KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A ACQV+L
Sbjct: 97 GALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKELKNGRLAMFSMFGF
Sbjct: 157 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGP++NL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 252
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/231 (77%), Positives = 203/231 (87%), Gaps = 3/231 (1%)
Query: 36 TMRRTVK--SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
MRRTVK + P S+WYG DRPK+LGPFS TPSYL+GE+PGDYGWDTAGLSADPETFAK
Sbjct: 4 VMRRTVKGKTTPTSMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAK 63
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
RE+EVIH+RWAMLGALGC+ PE+L+KNGV FGEAVW+KAGAQIF+ GGLDYLGNP+L+H
Sbjct: 64 YREIEVIHARWAMLGALGCLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVH 123
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVK 212
AQSI+AI A QV+LMG +EGYR+ GGP GEGLD +YPGG FDPLGLADDPD FAELKVK
Sbjct: 124 AQSIIAILASQVLLMGAIEGYRVYGGPGGEGLDKVYPGGDYFDPLGLADDPDTFAELKVK 183
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
E+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ADP NN +A AT FVP
Sbjct: 184 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLESHLADPSVNNGFAAATKFVP 234
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/216 (81%), Positives = 195/216 (90%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGPDRPK+LGPFSE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+KNG+ FGEAVWFKAGAQIF+EGGL+YLGN NLIHAQSI+A A QVV+
Sbjct: 92 GALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVV 151
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG E YR GGPLGEGLDPL+PGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 152 MGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 211
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPI+NL DH+A+P A NA+AYAT F P
Sbjct: 212 FVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTP 247
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/252 (73%), Positives = 209/252 (82%), Gaps = 9/252 (3%)
Query: 14 QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGE 72
++A+R ++ VG + R+ R ++ WYGPDRPK+LGPFSE TP+YLTGE
Sbjct: 6 KSAVRSTSVRPTPVG-SRAARVVPRAAIE------WYGPDRPKFLGPFSEGDTPAYLTGE 58
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWF 131
FPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGCV PE+LSK GV FGEAVWF
Sbjct: 59 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWF 118
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAGAQIF+EGGL+YLGN NL+HAQSI+A A QVV+MG E YR GGPLGEGLDPL+PG
Sbjct: 119 KAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPG 178
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
GAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+A+P A
Sbjct: 179 GAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSA 238
Query: 252 NNAWAYATNFVP 263
NA+AYAT F P
Sbjct: 239 VNAFAYATKFTP 250
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/229 (78%), Positives = 199/229 (86%), Gaps = 4/229 (1%)
Query: 39 RTVKSAPQSI--WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
R + P++ WYGPDRPK+LGPFSE TP+YLTGEFPGDYGWDTAGLSADPETF + R
Sbjct: 21 RAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYR 80
Query: 96 ELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
ELE+IH+RWAMLGALGCV PE+LSK GV FGEAVWFKAGAQIF+EGGL+YLGN NL+HA
Sbjct: 81 ELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHA 140
Query: 155 QSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKEL 214
QSI+A A QVV+MG E YR GGPLGEGLDPL+PGGAFDPLGLADDPD FAELKVKE+
Sbjct: 141 QSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEI 200
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+A+P A NA+AYAT F P
Sbjct: 201 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYATKFTP 249
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/268 (70%), Positives = 204/268 (76%), Gaps = 34/268 (12%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV----KSAPQSIWYGPDRPKY 57
AT A+ A G+ A + F GRITMR+T +A S WYG DR Y
Sbjct: 4 ATMALTSRALVGKPATSTRDVFGE-------GRITMRKTAGKPKPAASGSPWYGADRVLY 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+
Sbjct: 57 LGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI
Sbjct: 117 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI- 175
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 176 ----------------------ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 213
Query: 238 PIENLYDHIADPVANNAWAYATNFVPGK 265
P+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 214 PVENLADHLADPVNNNAWAYATNFVPGK 241
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/216 (80%), Positives = 195/216 (90%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGPDRPK+LGPFSE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 12 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+KNG+ FGEAVWFKAG+QIF+EGGL+YLGN NL+HAQSI+A A QVV+
Sbjct: 72 GALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVVV 131
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG E YR GGPLGEGLDPL+PGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 132 MGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 191
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPI+NL DH+A+P A NA+AYAT F P
Sbjct: 192 FVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTP 227
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/217 (80%), Positives = 191/217 (88%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGP+R K+LGPFS TP YLTGEF GDYGWDTAGLSADPETF + RELE+IH+RWAMLG
Sbjct: 39 FYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 98
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGC+ PE+L+KNGV FGEAVWFKAGAQIF EGGL+YLGN +LIHAQSILA ACQV+LM
Sbjct: 99 ALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILM 158
Query: 169 GFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G VEGYR+ GGP GEGLDPLYPG AFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFF
Sbjct: 159 GLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 218
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VQAIVTG+GPI NL H++DP NNAW YAT FVPG
Sbjct: 219 VQAIVTGQGPIANLDAHLSDPSGNNAWNYATKFVPGN 255
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/245 (75%), Positives = 205/245 (83%), Gaps = 5/245 (2%)
Query: 24 VRKVGVADGGRITMRRTVKSAPQSI---WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGW 79
V +G A + + + +APQ WYGPDRPK+LGPFSE TP+YLTGEFPGDYGW
Sbjct: 24 VYSLGSATHHQHPTKSSGSTAPQLSSWPWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGW 83
Query: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIF 138
DTAGLSADPETF + RELE+IH+RWAMLGALGCV PE+LSK GV FGEAVWFKAGAQIF
Sbjct: 84 DTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIF 143
Query: 139 SEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLG 198
+EGGL+YLGN NL+HAQSI+A A QVV+MG E YR GGPLGEGLDPL+PGGAFDPLG
Sbjct: 144 AEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLG 203
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
LADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+A+P A NA+AYA
Sbjct: 204 LADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYA 263
Query: 259 TNFVP 263
T F P
Sbjct: 264 TKFTP 268
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 188/251 (74%), Positives = 202/251 (80%), Gaps = 11/251 (4%)
Query: 18 RQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY 77
R SN VR + A GRITM + +WYGPDR KYLGPFS QTPSYL GEFPGDY
Sbjct: 24 RPSNAPVRDIAAAATGRITMSK-------ELWYGPDRVKYLGPFSAQTPSYLRGEFPGDY 76
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQ 136
GWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQ
Sbjct: 77 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQ 136
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-F 194
IFS+GGLDYLGNPNL+HAQSILA+ QVVLMG VEGYRI G P +G+G D LYPGG F
Sbjct: 137 IFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGND-LYPGGQYF 195
Query: 195 DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
DPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNA
Sbjct: 196 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANNA 255
Query: 255 WAYATNFVPGK 265
W YAT F PG
Sbjct: 256 WVYATKFTPGS 266
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 365 bits (938), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 170/216 (78%), Positives = 196/216 (90%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+KNG KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+L
Sbjct: 97 GALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGP++NL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 252
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 196/221 (88%), Gaps = 4/221 (1%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
+WYGPDR K+LGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LE+IH RWAM
Sbjct: 43 DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAM 102
Query: 107 LGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
LGALGCVFPE+LSK GV+F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILAIWACQV
Sbjct: 103 LGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQV 162
Query: 166 VLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+LMG VEGYRI G P +GEG D LYPGG FDPLG ADDP+ AELKVKE+KNGRLAMFS
Sbjct: 163 ILMGLVEGYRINGLPDVGEGGD-LYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFS 221
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
MFGFFVQAIVTGKGP+ENL+DH+ +PV NNAWAYAT FVPG
Sbjct: 222 MFGFFVQAIVTGKGPLENLFDHLDNPVVNNAWAYATRFVPG 262
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 196/221 (88%), Gaps = 4/221 (1%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
+WYGPDR K+LGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LE+IH RWAM
Sbjct: 43 DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAM 102
Query: 107 LGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
LGALGCVFPE+LSK GV+F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILAIWACQV
Sbjct: 103 LGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQV 162
Query: 166 VLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+LMG VEGYRI G P +GEG D LYPGG FDPLG ADDP+ AELKVKE+KNGRLAMFS
Sbjct: 163 ILMGLVEGYRINGLPDVGEGGD-LYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFS 221
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
MFGFFVQAIVTGKGP+ENL+DH+ +PV NNAWAYAT FVPG
Sbjct: 222 MFGFFVQAIVTGKGPLENLFDHLDNPVVNNAWAYATRFVPG 262
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/251 (74%), Positives = 202/251 (80%), Gaps = 11/251 (4%)
Query: 18 RQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY 77
R SN +R + A GRITM + +WYGPDR KYLGPFS QTPSYL GEFPGDY
Sbjct: 24 RPSNAPLRDIAAAATGRITMSK-------ELWYGPDRVKYLGPFSAQTPSYLRGEFPGDY 76
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQ 136
GWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQ
Sbjct: 77 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQ 136
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-F 194
IFS+GGLDYLGNPNL+HAQSILA+ QVVLMG VEGYRI G P +G+G D LYPGG F
Sbjct: 137 IFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGND-LYPGGQYF 195
Query: 195 DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
DPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNA
Sbjct: 196 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANNA 255
Query: 255 WAYATNFVPGK 265
W YAT F PG
Sbjct: 256 WVYATKFTPGS 266
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/211 (81%), Positives = 187/211 (88%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
WYGP+R K+LGPFS TP YLTGEF GDYGWDTAGLSADPETF + RELE+IH+RWAMLG
Sbjct: 40 WYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 99
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGC+ PE+L+KNGV FGEAVWFKAGAQIF EGGL+YLGN +LIHAQSILA ACQV+LM
Sbjct: 100 ALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILM 159
Query: 169 GFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G VEGYR+ GGP GEGLDPLYPG AFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFF
Sbjct: 160 GLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 219
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWAYAT 259
VQAIVTG+GPI NL H++DP NNAW YAT
Sbjct: 220 VQAIVTGQGPIANLDAHLSDPSGNNAWNYAT 250
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 176/209 (84%), Positives = 191/209 (91%), Gaps = 4/209 (1%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
+ TMR++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 4 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 63
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP
Sbjct: 64 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 123
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 124 SLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 183
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
KVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 184 KVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 182/242 (75%), Positives = 200/242 (82%), Gaps = 9/242 (3%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYL 58
T ++ S+FAG+ + +G A R+TMR+T A Q S WYG DR YL
Sbjct: 5 TMSLSSSSFAGKAVKNLPSP--AHIGEA---RVTMRKTAVKAKQVSSGSPWYGSDRVLYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
++NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYRI G
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRIAG 179
Query: 179 GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
GPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTG P
Sbjct: 180 GPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGGEP 239
Query: 239 IE 240
Sbjct: 240 CR 241
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 169/216 (78%), Positives = 196/216 (90%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+L
Sbjct: 96 GALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVIL 155
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 156 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 215
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGP++NL DH+A+P NNA+A+AT F P
Sbjct: 216 FVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 189/267 (70%), Positives = 211/267 (79%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F GQT +N+ +R+V G+ TM +WYGPDR KYLGPF
Sbjct: 12 SSTGLRPTQFVGQTRGSNANQ-LREVVPMGTGKFTMG-------NELWYGPDRVKYLGPF 63
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEGYRI G P
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 183
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 184 GVGEGND-LYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 242
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAWAYAT FVPG
Sbjct: 243 LENLLDHLDNPVANNAWAYATKFVPGS 269
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 186/245 (75%), Positives = 198/245 (80%), Gaps = 11/245 (4%)
Query: 24 VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 83
+R V A GRITM +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAG
Sbjct: 31 LRDVAAAANGRITMS-------NDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAG 83
Query: 84 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGG 142
LSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGG
Sbjct: 84 LSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGG 143
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLA 200
LDYLGNPNL+HAQSILA+ QV+LMG VEGYRI G P +GEG D LYPGG FDPLGLA
Sbjct: 144 LDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGND-LYPGGQYFDPLGLA 202
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
DDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHI +PVANNAW YAT
Sbjct: 203 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATK 262
Query: 261 FVPGK 265
F PG
Sbjct: 263 FAPGS 267
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 363 bits (931), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 188/266 (70%), Positives = 209/266 (78%), Gaps = 14/266 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+T+ ++ + F GQT + +N +R V R TM +WYGPDR KYLGPF
Sbjct: 10 STTVVKATPFLGQT--KNANP-LRDVVAMGSARFTMS-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K
Sbjct: 60 SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 120 VKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 179
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPG 264
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 LENLLDHLDNPVANNAWVYATKFVPG 264
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 362 bits (930), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 189/267 (70%), Positives = 211/267 (79%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F GQT +N+ +R+V G+ TM +WYGPDR KYLGPF
Sbjct: 12 SSTGLRPTQFLGQTRGSNANQ-LREVVPMGTGKFTMG-------NELWYGPDRVKYLGPF 63
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEGYRI G P
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 183
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 184 GVGEGND-LYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 242
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAWAYAT FVPG
Sbjct: 243 LENLLDHLDNPVANNAWAYATKFVPGS 269
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/216 (78%), Positives = 196/216 (90%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+L
Sbjct: 97 GALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGP++NL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKFTP 252
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 191/269 (71%), Positives = 209/269 (77%), Gaps = 14/269 (5%)
Query: 2 ATSAI--QQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
ATS + ++ F GQ ++ +R V A GRITM +WYGPDR KYLG
Sbjct: 8 ATSRVVAAKTPFLGQGRTANASP-LRDVAAAANGRITMS-------NDLWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQ 119
Query: 120 K-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEGYRI G
Sbjct: 120 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 179
Query: 179 GP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 239 GPLENLLDHLDNPVANNAWVYATKFAPGS 267
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/247 (72%), Positives = 202/247 (81%), Gaps = 7/247 (2%)
Query: 19 QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDY 77
Q+ + VG A +R V++A + WYGPDR K+LGPFSE PSYLTG+FPGDY
Sbjct: 2 QTAMLAKPVGFASS---NVRNIVRNAVE--WYGPDRAKWLGPFSEGDVPSYLTGQFPGDY 56
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQ 136
GWDTAGLSADPETF RE E+IH+RWAMLGALGCV PEILSK GV FGE+VWFKAG+Q
Sbjct: 57 GWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQ 116
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDP 196
IF EGGLDYLGNP+L+HAQSILAI CQVVLMG +E YR+ GGPLGEGLD L+PG FDP
Sbjct: 117 IFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDP 176
Query: 197 LGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA 256
LGLADDPD FAELKVKE+KNGRLAMFSMFGF+VQAIVTGKGPIEN +H+ADP + NAW
Sbjct: 177 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVNAWN 236
Query: 257 YATNFVP 263
YAT FVP
Sbjct: 237 YATKFVP 243
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/267 (69%), Positives = 207/267 (77%), Gaps = 11/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+ + + ++ F S +R + A GRITM +WYGPDR KYLGPF
Sbjct: 10 SRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMG-------NDLWYGPDRVKYLGPF 62
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K
Sbjct: 63 SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKW 122
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 123 VGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLD 182
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL+DH+ DPVANNAW +AT F PG
Sbjct: 242 LENLFDHLDDPVANNAWVFATKFAPGS 268
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 187/266 (70%), Positives = 208/266 (78%), Gaps = 14/266 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+ + ++Q+ F GQ R+S +R V + TM +WYGPDR KYLGPF
Sbjct: 10 SATVVKQTPFLGQ---RKSANPLRDVVAMGTSKFTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 60 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q+VLMG VEG+RI G P
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLP 179
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 DVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPG 264
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 LENLLDHLDNPVANNAWVYATKFVPG 264
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/218 (79%), Positives = 193/218 (88%), Gaps = 1/218 (0%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGPDR K+LGPFS+ TPSYLTGEFPGDYGWDTAGLSADPETFA RELE+IH+RWAMLG
Sbjct: 34 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAMLG 93
Query: 109 ALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
ALGCV PE+LSK GV+FGEAVWFKAGAQIF++GGLDYLGN +L+HAQSILAI CQVVL
Sbjct: 94 ALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSILAILGCQVVL 153
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG E +R+ GGPLGE LD L+PGGAFDPLGLADDPD F+ELKVKE+KNGRLAMFSMFGF
Sbjct: 154 MGGAEAFRVNGGPLGEDLDKLHPGGAFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGF 213
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FVQAIVTGKGP+EN +HIADP +N + YAT FVPG
Sbjct: 214 FVQAIVTGKGPVENWAEHIADPSGSNGFVYATKFVPGN 251
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 168/216 (77%), Positives = 194/216 (89%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+L
Sbjct: 96 GALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVIL 155
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGF
Sbjct: 156 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGF 215
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGP++NL DH+A+P NNA+A+AT F P
Sbjct: 216 FVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 359 bits (922), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 170/194 (87%), Positives = 184/194 (94%)
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWF 131
EFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWF
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 60
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
KAG+QIFSEGGLDYLGNP+L+HAQSIL +WA QV+LMG VEGYRI GGPLGE +DPLYPG
Sbjct: 61 KAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDPLYPG 120
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
G+FDPLGLA+ P+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV
Sbjct: 121 GSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 180
Query: 252 NNAWAYATNFVPGK 265
NNAWAYATNF PGK
Sbjct: 181 NNAWAYATNFAPGK 194
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 359 bits (922), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 182/239 (76%), Positives = 198/239 (82%), Gaps = 11/239 (4%)
Query: 30 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
A GRI+M +WYGPDR KYLGPFS QTPSYL+GEFPGDYGWDTAGLSADPE
Sbjct: 37 ASNGRISMS-------NELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPE 89
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
FA+NR LEVIH RWAMLGALGCVFPE+L K GV+F E VWFKAGAQIFSEGGLDYLGN
Sbjct: 90 AFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGN 149
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGA-FDPLGLADDPDQF 206
PNL+HAQSILA+ QV+LMG VEG+RI G +GEG D LYPGG FDPLGLADDP F
Sbjct: 150 PNLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTF 208
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG
Sbjct: 209 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPGS 267
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 359 bits (922), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 184/255 (72%), Positives = 202/255 (79%), Gaps = 5/255 (1%)
Query: 10 AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYL 69
A AL E +K A G + T KSA WYGPDR K+LGPFS TP+YL
Sbjct: 4 ALISNRALTVKVEAAKK---AAGTKQTKAAPAKSAGIE-WYGPDRAKWLGPFSTNTPAYL 59
Query: 70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEA 128
TGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS GVKFGE
Sbjct: 60 TGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEP 119
Query: 129 VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL 188
VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A A QVVLMG +EGYR+ GGP GEGLDPL
Sbjct: 120 VWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPL 179
Query: 189 YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIAD 248
YPG +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+AD
Sbjct: 180 YPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLAD 239
Query: 249 PVANNAWAYATNFVP 263
P NNA+A AT F P
Sbjct: 240 PGTNNAFAAATKFTP 254
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 176/230 (76%), Positives = 195/230 (84%), Gaps = 4/230 (1%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
+R ++A + WYGPDR K+LGPFSE PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 16 NVRNIARNAVE--WYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 73
Query: 95 RELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
RE E+IH+RWAMLGALGCV PEILSK GV FGE+VWFKAG+QIF EGGLDYLGNP+L+H
Sbjct: 74 REQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVH 133
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAI CQVVLMG +E YR+ GGPLGEGLD L+PG FDPLGLADDPD FAELKVKE
Sbjct: 134 AQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAELKVKE 193
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
+KNGRLAMFSMFGF+VQAIVTGKGPIEN +H+ADP + NAW YAT FVP
Sbjct: 194 IKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVNAWNYATKFVP 243
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 168/216 (77%), Positives = 195/216 (90%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+L
Sbjct: 97 GALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNG LAMFSMFGF
Sbjct: 157 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGALAMFSMFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGP++NL DH+A+P NNA+A+AT F P
Sbjct: 217 FVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKFTP 252
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 359 bits (921), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 189/269 (70%), Positives = 207/269 (76%), Gaps = 13/269 (4%)
Query: 2 ATSAI--QQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
ATS + ++ F GQ + +R V A GRITM +WYGPDR KYLG
Sbjct: 8 ATSRVVAAKTPFLGQGRAAANASPLRDVAAAASGRITMG-------NDLWYGPDRVKYLG 60
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
Query: 120 K-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 121 KWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRING 180
Query: 179 -GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
+GEG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 LDGVGEG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ DPVANNAW YAT F PG
Sbjct: 240 GPLENLLDHLDDPVANNAWVYATKFAPGS 268
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 189/265 (71%), Positives = 206/265 (77%), Gaps = 12/265 (4%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
+ I+ S F GQT SN +R V G+ TM +WYGPDR KYLGPFS
Sbjct: 15 TVIKPSPFLGQTKGSNSNT-LRDVVSMGTGKYTMG-------NDLWYGPDRVKYLGPFSA 66
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NG 122
QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-L 181
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G P +
Sbjct: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
Query: 182 GEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
GEG + LYPG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 187 GEG-NNLYPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ DPVANNAW YAT FVPG
Sbjct: 246 NLLDHLDDPVANNAWVYATKFVPGS 270
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 176/230 (76%), Positives = 195/230 (84%), Gaps = 4/230 (1%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
++R ++A + WYGPDRPK+LGPFSE PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 1 SVRNVSRNAIE--WYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 58
Query: 95 RELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
RE E+IH+RWAMLGALGCV PEIL+K GV GE+VWFKAG+QIF EGGLDYLGNP+L+H
Sbjct: 59 REQELIHARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVH 118
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAI CQVVLMG +E YR+ GGPLGEGLDPL+PG FDPLGLADDPD FAELKVKE
Sbjct: 119 AQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKE 178
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
+KNGRLAMFSMFGF+VQAIVTGKGPIEN DH+ADP AW YAT FVP
Sbjct: 179 IKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFNVTAWNYATKFVP 228
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/266 (70%), Positives = 208/266 (78%), Gaps = 14/266 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+ + ++Q+ F GQ R+S +R V + TM +WYGPDR KYLGPF
Sbjct: 10 SATVVKQTPFLGQ---RKSANPLRDVVAMGTPKFTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 60 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q+VLMG VEG+RI G P
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLP 179
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 DVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPG 264
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 239 LENLLDHLDNPVANNAWVYATKFVPG 264
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 189/269 (70%), Positives = 208/269 (77%), Gaps = 14/269 (5%)
Query: 2 ATSAI--QQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
ATS + ++ F GQ ++ +R V A GRITM +WYGPDR KYLG
Sbjct: 8 ATSRVVAAKTPFLGQGRTANASP-LRDVAAAANGRITMS-------NDLWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS QTPSYLTGEF GDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 60 PFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 119
Query: 120 K-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEGYRI G
Sbjct: 120 KWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 179
Query: 179 GP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
P +GEG D LYPGG FDPLGLADDP FAEL+VKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 LPGVGEGND-LYPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPGK 265
GP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 239 GPLENLLDHLDNPVANNAWVYATKFAPGS 267
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/206 (84%), Positives = 187/206 (90%), Gaps = 4/206 (1%)
Query: 33 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GR+TMR+T A S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 29 GRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGN
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
PNL+HAQSILAIWA QV+LMG VEGYRIGGGPLGE +DPLYPGG+FDPLGLADDP+ FAE
Sbjct: 149 PNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 208
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVT 234
LKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 184/245 (75%), Positives = 196/245 (80%), Gaps = 11/245 (4%)
Query: 24 VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 83
+R V A GRITM +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAG
Sbjct: 31 LRDVAAAANGRITMS-------NDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAG 83
Query: 84 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGG 142
LSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGG
Sbjct: 84 LSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGG 143
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLA 200
LDYLGNPNL+HAQSILA+ QV+LMG VEGYRI G P +GEG D LYPGG FDPLGLA
Sbjct: 144 LDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLPGVGEGND-LYPGGQYFDPLGLA 202
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
DDP FAELKVKE+KNGRLAMFSMF FFVQAIVTGKG +ENL DHI +PVANNAW YAT
Sbjct: 203 DDPVTFAELKVKEIKNGRLAMFSMFRFFVQAIVTGKGSLENLLDHIDNPVANNAWVYATK 262
Query: 261 FVPGK 265
F PG
Sbjct: 263 FAPGS 267
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 191/270 (70%), Positives = 208/270 (77%), Gaps = 14/270 (5%)
Query: 2 ATSAI--QQSAFAGQTALRQSNEFVRKVGVAD-GGRITMRRTVKSAPQSIWYGPDRPKYL 58
ATS I ++ F GQ + +R V A GGRITM +WYGPDR KYL
Sbjct: 8 ATSRIVAAKTPFLGQGRAAANASPLRDVAAAAAGGRITMG-------NDLWYGPDRVKYL 60
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61 GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVL 120
Query: 119 SK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI
Sbjct: 121 EKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN 180
Query: 178 G-GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
G +GEG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 181 GLDGVGEG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 239
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGP+ENL DH+ DPVANNAW YAT F PG
Sbjct: 240 KGPLENLLDHLDDPVANNAWVYATKFAPGS 269
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)
Query: 74 PGDYGWDTA-GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
PGDYGWDT+ GLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFK
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 60
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGG 192
AGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG
Sbjct: 61 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 120
Query: 193 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
+FDPLGLA+DP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV N
Sbjct: 121 SFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 180
Query: 253 NAWAYATNFVPGK 265
NAWAYATNFVPGK
Sbjct: 181 NAWAYATNFVPGK 193
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 357 bits (915), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 206/266 (77%), Gaps = 14/266 (5%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 62
++ + ++ F GQT +S+ +R V G+ TM +WYGPDR KYLGPFS
Sbjct: 10 SATVLKTRFLGQT---RSSSALRDVVAMGNGKFTMS-------NELWYGPDRVKYLGPFS 59
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-N 121
QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 60 AQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWV 119
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GP 180
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDG 179
Query: 181 LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGP+
Sbjct: 180 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFIQAIVTGKGPL 238
Query: 240 ENLYDHIADPVANNAWAYATNFVPGK 265
ENL DH+ DPVANNAW YAT F PG
Sbjct: 239 ENLLDHLDDPVANNAWVYATKFAPGS 264
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 186/267 (69%), Positives = 209/267 (78%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F GQT SN +R V G+ TM +WYGPDR KYLGPF
Sbjct: 9 SSTVLRPTPFLGQTRGANSNP-LRDVVPMGTGKYTMG-------NELWYGPDRVKYLGPF 60
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E +WFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 121 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 180
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+G+G + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GVGDG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 240 LENLLDHLDNPVANNAWVYATKFVPGS 266
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/252 (70%), Positives = 197/252 (78%), Gaps = 32/252 (12%)
Query: 19 QSNEFVRKVGVADGGRITMRR-----TVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEF 73
Q+N+ + G R+TMR+ +V ++ S WYGPDR YLGPFS + PSYLTGEF
Sbjct: 27 QNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEF 86
Query: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKA 133
PGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKA
Sbjct: 87 PGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKA 146
Query: 134 GAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA 193
GAQIFSEGGLDYLG+PNL+HAQSILAI ACQV+LMG +EGYR+ GGPLGE
Sbjct: 147 GAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGE---------- 196
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
VKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NN
Sbjct: 197 -----------------VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 239
Query: 254 AWAYATNFVPGK 265
AWAYATNFVPGK
Sbjct: 240 AWAYATNFVPGK 251
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/223 (80%), Positives = 190/223 (85%), Gaps = 4/223 (1%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWA
Sbjct: 42 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 106 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 161
Query: 165 VVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMF 222
VVLMG VEG+RI G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 162 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMF 220
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 221 SMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 263
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 168/215 (78%), Positives = 192/215 (89%), Gaps = 1/215 (0%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGP+R YLGPF+ ++PSYL GE+PGDYGWDTAGLSADPETFA+ RE+EVIH+RWAMLG
Sbjct: 36 FYGPNRAGYLGPFT-KSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 94
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGCV PE+L+KNGV FGEAVW+KAG+QIF+ GGLDYLGNP+LIHAQSI+AI QV+LM
Sbjct: 95 ALGCVTPELLAKNGVSFGEAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLM 154
Query: 169 GFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G +EGYR+ GGP GEGLD LYPG AFDPLGLADDPD FAEL+VKE+KNGRLAMFSMFGFF
Sbjct: 155 GLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFGFF 214
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
VQAIVTGKGPIENL DH+A+P NN +A AT FVP
Sbjct: 215 VQAIVTGKGPIENLADHLANPSVNNGFAAATKFVP 249
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 187/264 (70%), Positives = 205/264 (77%), Gaps = 13/264 (4%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQ 64
++Q+ F GQ + + +R V R TM +WYGPDR KYLGPFS Q
Sbjct: 13 VVKQTPFLGQR--KGAANPLRDVVAMGTSRFTMG-------NELWYGPDRVKYLGPFSAQ 63
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGV 123
TPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K V
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 123
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LG 182
F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P +G
Sbjct: 124 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 183
Query: 183 EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
EG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 184 EG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DHI +PVANNAW YAT FVPG
Sbjct: 243 LLDHIDNPVANNAWVYATKFVPGS 266
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/223 (80%), Positives = 190/223 (85%), Gaps = 4/223 (1%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWA
Sbjct: 42 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 106 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 161
Query: 165 VVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMF 222
VVLMG VEG+RI G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 162 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMF 220
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 221 SMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 263
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 187/264 (70%), Positives = 205/264 (77%), Gaps = 13/264 (4%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQ 64
++Q+ F GQ + + +R V R TM +WYGPDR KYLGPFS Q
Sbjct: 11 VVKQTPFLGQR--KGAANPLRDVVAMGTSRFTMG-------NELWYGPDRVKYLGPFSAQ 61
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGV 123
TPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K V
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 121
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LG 182
F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P +G
Sbjct: 122 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 181
Query: 183 EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
EG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 182 EG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DHI +PVANNAW YAT FVPG
Sbjct: 241 LLDHIDNPVANNAWVYATKFVPGS 264
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 182/239 (76%), Positives = 195/239 (81%), Gaps = 11/239 (4%)
Query: 30 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
A GGRITM +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 42 AAGGRITMG-------NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 94
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGN
Sbjct: 95 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 154
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGA-FDPLGLADDPDQF 206
PNL+HAQSILA+ QV+LMG VEG+RI G +GEG + LYPGG FDPLGLADDP F
Sbjct: 155 PNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEG-NNLYPGGQYFDPLGLADDPVTF 213
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ DPVANNAW YAT F PG
Sbjct: 214 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFAPGS 272
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/247 (71%), Positives = 199/247 (80%), Gaps = 7/247 (2%)
Query: 19 QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDY 77
Q+ + VG A +R ++A + WYGPDR K+LGPF E PSYLTGEFPGDY
Sbjct: 2 QTAMLAKPVGFASS---NVRNIARNAVE--WYGPDRAKWLGPFFEGDVPSYLTGEFPGDY 56
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQ 136
GWDTAGLSADPETF RE E+IH+RWAMLGALGCV PEILSK GV GE+VWFKAG+Q
Sbjct: 57 GWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQ 116
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDP 196
IF EGGLDYLGNP+L+HAQSILAI CQVVLMG +E YR+ GGPLG+GLD L+PG FDP
Sbjct: 117 IFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGKGLDVLHPGEKFDP 176
Query: 197 LGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA 256
LGLADDPD FAELKVKE+KNGRLAMFSMFGF+VQAIVTGKGPIEN +H+ADP + NAW
Sbjct: 177 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVNAWN 236
Query: 257 YATNFVP 263
YAT FVP
Sbjct: 237 YATKFVP 243
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 187/266 (70%), Positives = 206/266 (77%), Gaps = 12/266 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S + + F GQT N +R V + TM +WYGPDR KYLGPF
Sbjct: 8 SSSVLTPTPFLGQTKGSSFNP-LRDVVSLGSPKYTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 VRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 179
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPG 264
+ENL DHI DPVANNAWA+AT FVPG
Sbjct: 239 LENLLDHIDDPVANNAWAFATKFVPG 264
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 168/216 (77%), Positives = 193/216 (89%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALG V PE+L KNGV+FGEAVWFKAGAQIF EGGL+YLGNP+LIHAQ+I+A A QVVL
Sbjct: 97 GALGIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
+G VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGF
Sbjct: 157 LGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGF 216
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPI+NL DH+++P NNA+A+AT + P
Sbjct: 217 FVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKYTP 252
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/223 (80%), Positives = 190/223 (85%), Gaps = 4/223 (1%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWA
Sbjct: 3 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 106 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 122
Query: 165 VVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMF 222
VVLMG VEG+RI G P +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 123 VVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMF 181
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 182 SMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 224
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 205/267 (76%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F G T +N +R V G+ TM +WYGPDR KYLGPF
Sbjct: 7 SSTVVRATPFLGLTKATNANP-LRDVVSMGPGKFTMG-------SDLWYGPDRVKYLGPF 58
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+ QVVLMG VE +RI G P
Sbjct: 119 VKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRINGLP 178
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 179 GVGEGND-LYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 238 LENLLDHLDNPVANNAWVYATKFVPGS 264
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 177/244 (72%), Positives = 193/244 (79%), Gaps = 9/244 (3%)
Query: 14 QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEF 73
Q AL Q R V GR T + T S WYGP+RP++LGPFS TPSYL GE+
Sbjct: 2 QAALTQ-----RLAAVKPSGRATRQVTRASVE---WYGPNRPQFLGPFSGSTPSYLKGEY 53
Query: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFK 132
PGDYGWDTAGLSADPETFA+ RELEVIH+RWAMLGALGCV PE+L NGV FGEAVWFK
Sbjct: 54 PGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFK 113
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGG 192
AGAQIF EGGLDYLGNP+LIHAQSI+A+ Q+ LMG +EGYR+ GGP GEGLD LYPG
Sbjct: 114 AGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYRVNGGPAGEGLDALYPGE 173
Query: 193 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
AFDPLGLADDPD F+ELKVKELKNGRLAM SMFGFFVQ IVT KGPIENL DH+A P A
Sbjct: 174 AFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDAT 233
Query: 253 NAWA 256
N WA
Sbjct: 234 NFWA 237
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 352 bits (903), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 172/221 (77%), Positives = 188/221 (85%), Gaps = 4/221 (1%)
Query: 49 WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGPDRPK+LGPFSE TP+YLTGEF GDYGWDTAGLSADP+TFAK RE+EVIH+RWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGC+ PE+L+KNGV FGEAVWFKAGAQIF +GGL+YLGN NL+HAQSILA A QV+L
Sbjct: 89 GALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLL 148
Query: 168 MGFVEGYRIGGGP---LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
MG E YR GG GE LD LYPGGAFDPLGLADDPD AELKVKE+KNGRLAMFSM
Sbjct: 149 MGAAESYRANGGAPGGFGEDLDSLYPGGAFDPLGLADDPDTLAELKVKEIKNGRLAMFSM 208
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FGFFVQAIVTG+GPI NL H++DP NNAW YAT FVPG
Sbjct: 209 FGFFVQAIVTGQGPIANLDAHLSDPSGNNAWNYATKFVPGN 249
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/267 (69%), Positives = 204/267 (76%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++ ++ + F GQ +N +R V G+ TM +WYGPDR KYLGPF
Sbjct: 10 SSGTLKATPFLGQGKGANANA-LRDVVSMGTGKYTMG-------NDLWYGPDRVKYLGPF 61
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 62 SAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 121
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEGYRI G
Sbjct: 122 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLD 181
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAW YAT F PG
Sbjct: 241 LENLLDHLDNPVANNAWVYATKFAPGS 267
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 183/267 (68%), Positives = 205/267 (76%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A S I GQ+ + +++ +R V G++TM +WYGPDR KYLGPF
Sbjct: 4 AASTIASPFLVGQSRVSAASQ-LRNVASVGNGKLTMG-------NELWYGPDRVKYLGPF 55
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 56 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKW 115
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V F E VWFKAGAQIFS+GGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 116 VNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRINGLD 175
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+G G D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 176 GVGNGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 234
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+EN DH+ +PVANNAW YAT FVPG
Sbjct: 235 LENWLDHLDNPVANNAWVYATKFVPGS 261
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/267 (68%), Positives = 204/267 (76%), Gaps = 13/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S ++ + F GQ +N V + +G I +WYGPDR KYLGPF
Sbjct: 12 SSSVLRPTPFLGQRG-SSANPLKDVVSMGNGKYIMGNE--------LWYGPDRVKYLGPF 62
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 63 SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 122
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 123 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 182
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 LENLLDHLDNPVANNAWVYATKFSPGS 268
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/267 (69%), Positives = 204/267 (76%), Gaps = 12/267 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++ ++ + F GQ +N +R V G+ TM +WYGPDR KYLGPF
Sbjct: 11 SSGTLKATPFLGQGKGANANA-LRDVVSMGTGKYTMG-------NDLWYGPDRVKYLGPF 62
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 63 SAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 122
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEGYRI G
Sbjct: 123 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLD 182
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 183 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 LENLLDHLDNPVANNAWVYATKFSPGS 268
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/216 (77%), Positives = 193/216 (89%), Gaps = 1/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
+YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 28 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAML 87
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALG V PE+L+KNGV FGEAVWFKAGAQIF EGGL+YLGNP+LIHAQ+I+A A QV+L
Sbjct: 88 GALGIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVIL 147
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
+G VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGF
Sbjct: 148 LGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGF 207
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPI+NL DH+++P NNA+A+AT + P
Sbjct: 208 FVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKYTP 243
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/214 (78%), Positives = 186/214 (86%), Gaps = 5/214 (2%)
Query: 34 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
++ RRTVK S P S WYGP+RP +LG F+ + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 21 KVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETF + RELE+IH+RWAMLGALGC+FPE+L GV FGEAVWFKAGAQIF EGGLDYLGN
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGN 140
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
PNL+HAQSILAI QV+LMG +EGYR+ GGPLGEGLD LYPGG+FDPLGLADDPD FAE
Sbjct: 141 PNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAE 200
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 204/266 (76%), Gaps = 12/266 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S + + F GQT N +R V + TM +WYGPDR KYLGPF
Sbjct: 8 SSSVLSPTTFLGQTKASSFNP-LRDVVSLGSPKYTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 179
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPG 264
+ENL DH+ +PVANNAWA+AT F PG
Sbjct: 239 LENLLDHLDNPVANNAWAFATKFAPG 264
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 204/266 (76%), Gaps = 12/266 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S + + F GQT N +R V + TM +WYGPDR KYLGPF
Sbjct: 8 SSSVLTPTTFLGQTKASSFNP-LRDVVSLGSPKYTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 179
Query: 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 180 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 239 IENLYDHIADPVANNAWAYATNFVPG 264
+ENL DH+ +PVANNAWA+AT F PG
Sbjct: 239 LENLLDHLDNPVANNAWAFATKFAPG 264
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/186 (89%), Positives = 178/186 (95%)
Query: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFS 139
DTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 60
Query: 140 EGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGL 199
EGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGL
Sbjct: 61 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 120
Query: 200 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 259
ADDPD FAELKVKE+KNG LAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYAT
Sbjct: 121 ADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 180
Query: 260 NFVPGK 265
NFVPGK
Sbjct: 181 NFVPGK 186
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 183/265 (69%), Positives = 202/265 (76%), Gaps = 12/265 (4%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
+ ++ + F GQ N +R V G+ +M +WYGPDR KYLGPFS
Sbjct: 14 TVLKPTPFLGQGKASNGNP-LRDVVSMGSGKYSMS-------NELWYGPDRVKYLGPFSA 65
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NG 122
QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 66 QTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLR 125
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPL 181
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G +
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 185
Query: 182 GEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
GEG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 186 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 244
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ +PVANNAW YAT F PG
Sbjct: 245 NLLDHLDNPVANNAWVYATKFAPGS 269
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 176/258 (68%), Positives = 203/258 (78%), Gaps = 16/258 (6%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTP 66
QS G TA K + G + R +V++A + WYGPDR K+LGP+S+ P
Sbjct: 6 QSVLVGATA---------KTALVKGNK---RVSVQAAVE--WYGPDRAKWLGPYSDGAVP 51
Query: 67 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKF 125
SYLTGEFPGDYGWDTAGLSADPETF K RE E+IH+RWAMLGALGCV PEIL+K G F
Sbjct: 52 SYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSF 111
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL 185
GE+VWF+AGAQIF +GGLDYLG+P LIHAQSI AI QV+LMG +EGYR+ GGP GEGL
Sbjct: 112 GESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGL 171
Query: 186 DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245
DPLYPG +FDPLGLADDPD FAELK+KE+KNGRLAMFSMFGF+VQAIVTGKGP+EN +H
Sbjct: 172 DPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEH 231
Query: 246 IADPVANNAWAYATNFVP 263
IADP NA++YAT F P
Sbjct: 232 IADPFTANAFSYATKFTP 249
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 184/258 (71%), Positives = 198/258 (76%), Gaps = 12/258 (4%)
Query: 11 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLT 70
F GQ N +R V G+ TM +WYGPDR KYLGPFS QTPSYL
Sbjct: 16 FLGQARASPQNP-LRDVVAMGTGKYTMS-------NDLWYGPDRVKYLGPFSAQTPSYLN 67
Query: 71 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAV 129
GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K V F E V
Sbjct: 68 GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPV 127
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPL 188
WFKAG+QIF+EGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G +GEG D L
Sbjct: 128 WFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGND-L 186
Query: 189 YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIA 247
YPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+
Sbjct: 187 YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD 246
Query: 248 DPVANNAWAYATNFVPGK 265
DPVANNAW YAT F PG
Sbjct: 247 DPVANNAWVYATKFAPGS 264
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 194/228 (85%), Gaps = 4/228 (1%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
R +V++A + WYGPDR K+LGP+S+ PSYLTGEFPGDYGWDTAGLSADPETF K RE
Sbjct: 21 RVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRE 78
Query: 97 LEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
E+IH+RWAMLGALGCV PEIL+K G FGE+VWF+AGAQIF +GGLDYLG+P LIHAQ
Sbjct: 79 TELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQ 138
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
SI AI QV+LMG +EGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELK+KE+K
Sbjct: 139 SIGAIVISQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIK 198
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
NGRLAMFSMFGF+VQAIVTGKGP+EN +H+ADP NA++YAT F P
Sbjct: 199 NGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFSYATKFTP 246
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/223 (78%), Positives = 190/223 (85%), Gaps = 4/223 (1%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWA
Sbjct: 10 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 69
Query: 106 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGALGC+ PE+L K V F E +WFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 70 MLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 129
Query: 165 VVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMF 222
VVLMG VEG+RI G P +G+G + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 130 VVLMGLVEGFRINGLPGVGDG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 188
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 189 SMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 231
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 166/185 (89%), Positives = 177/185 (95%)
Query: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSE 140
TAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSE
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 61
Query: 141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLA 200
GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE DPLYPGG+FDPLGLA
Sbjct: 62 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 121
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
DDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATN
Sbjct: 122 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATN 181
Query: 261 FVPGK 265
FVPGK
Sbjct: 182 FVPGK 186
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/239 (71%), Positives = 189/239 (79%), Gaps = 23/239 (9%)
Query: 27 VGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
VG + T ++ +P WYGPDR KYLGPF + PSYLTGEFPGDYGW+TAGLSA
Sbjct: 14 VGKGHHEKTTTKKVSSGSP---WYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSA 70
Query: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
DPETFAKNRELEVIHSRWAM WFKA +QIFSEGGLDYL
Sbjct: 71 DPETFAKNRELEVIHSRWAMFDR--------------------WFKARSQIFSEGGLDYL 110
Query: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF 206
GNP+L+HAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ F
Sbjct: 111 GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAF 170
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFV GK
Sbjct: 171 VELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVLGK 229
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 178/261 (68%), Positives = 203/261 (77%), Gaps = 14/261 (5%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
SA+ ++FAG + LR + K G R R ++ +YGPDR +LGPF++
Sbjct: 3 SALLCNSFAGAS-LRSAVPTAGK-----GNRQVTRAAIE------FYGPDRATFLGPFTD 50
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
TPSYL GEFPGDYGWDTAGLSADPETFA+ RE+EVIH+RWAMLGALGCV PE+L+KNGV
Sbjct: 51 -TPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGV 109
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLG 182
FGEAVWFKAGAQIF GL+YLGN +L+HAQSI+A ACQV+LMG E YR G GP
Sbjct: 110 SFGEAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAAGEGPGL 169
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
EGLD LYPGG FDPLGLADDPD F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct: 170 EGLDSLYPGGPFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 229
Query: 243 YDHIADPVANNAWAYATNFVP 263
DH+ADP NN +A AT F P
Sbjct: 230 SDHLADPGVNNGFAAATKFAP 250
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/216 (77%), Positives = 185/216 (85%), Gaps = 2/216 (0%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGPDR +LGPF+E +PSYL GEFPGDYGWDTAGLSADPETFA+ RE+EVIH+RWAMLG
Sbjct: 31 FYGPDRAGFLGPFTE-SPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 89
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGCV PE+L+KNGV FGEAVWFKAGAQIF GL+YLGNP+L+HAQSI+A ACQV+LM
Sbjct: 90 ALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILM 149
Query: 169 GFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
G E YR G GP EGLD LYPGG FDPLGLADDPD FAELK KE+KNGRLAMFSMFGF
Sbjct: 150 GGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLADDPDTFAELKTKEIKNGRLAMFSMFGF 209
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPIENL DH+ADP NN +A AT F P
Sbjct: 210 FVQAIVTGKGPIENLSDHLADPGVNNGFAAATKFAP 245
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 342 bits (878), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 174/221 (78%), Positives = 188/221 (85%), Gaps = 4/221 (1%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
+WYGPDR KYLGPFS QTPSYLTGEFPG+YGWDTAGLSADPE FAKNR LEVIH RWAM
Sbjct: 1 DLWYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAM 60
Query: 107 LGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
LGA GC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV
Sbjct: 61 LGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV 120
Query: 166 VLMGFVEGYRIGG-GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+LMG VEG RI G +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFS
Sbjct: 121 ILMGLVEGLRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 179
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
MFGFFVQAIVTGKGP+ENL DH+ +PVANNAWA+AT FVPG
Sbjct: 180 MFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAFATKFVPG 220
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 164/222 (73%), Positives = 192/222 (86%), Gaps = 2/222 (0%)
Query: 44 APQSIWYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
AP +YGP+R K+LGP+SE TP+Y +FPGDYGWDTAGLSADPETF + RELE+IH+
Sbjct: 35 APGIEFYGPNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHA 94
Query: 103 RWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-W 161
RWAMLGALGC+ PE+L+K+G +FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I
Sbjct: 95 RWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPG 154
Query: 162 ACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAM 221
+V+LMG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAM
Sbjct: 155 RFKVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAM 214
Query: 222 FSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FSMFGFFVQAIVTGKGPI+NL DH+++P NNA+A+AT F P
Sbjct: 215 FSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTP 256
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/259 (63%), Positives = 199/259 (76%), Gaps = 7/259 (2%)
Query: 4 SAIQQSAFAGQTALRQSNEF-VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 62
+A+ S F G + + + +K+ + RRT + P S +YGPDR +LGPF+
Sbjct: 3 AALASSTFLGAAVVAPAQKVEAKKINTV----VEARRTKSATPDSPFYGPDRVTFLGPFT 58
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-N 121
+ PSYLTGE+PGDYGWDT GLSADPETFA RE+E++H+RWAMLG LGC PE L K +
Sbjct: 59 D-VPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYS 117
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G+ FGE+VWFKAG QIF EGGLDYLGNP+L+HAQSI+A Q +LMG VEGYR+GGGPL
Sbjct: 118 GINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGGGPL 177
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE D +YPGG+FDPLGL DDPD AELKVKE+KNGRLAMFSMFG+F+QAIVTGKGP+EN
Sbjct: 178 GEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMFGYFIQAIVTGKGPVEN 237
Query: 242 LYDHIADPVANNAWAYATN 260
L H+ADP NN +AYAT+
Sbjct: 238 LDAHLADPFVNNGFAYATS 256
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 186/232 (80%), Gaps = 4/232 (1%)
Query: 25 RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
R + R T + T SA +YGPDR K+LGPFS TPSYL GE+PGDYGWDTAGL
Sbjct: 7 RSIAAVRPTRATRQVTRASAE---FYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGL 63
Query: 85 SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGL 143
SADPETF++ RELEVIH+RWAMLGALGCV PE+L KNG FGEAVWFKAGAQIF +GGL
Sbjct: 64 SADPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGL 123
Query: 144 DYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDP 203
DYLGN NL+HAQSI+A+ Q+VLMG +EGYR+ GGP GE DP+YPG AFDPLGLADDP
Sbjct: 124 DYLGNANLVHAQSIVAVLLTQIVLMGLIEGYRVNGGPAGEITDPIYPGEAFDPLGLADDP 183
Query: 204 DQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW 255
D AELKVKE+KNGRLAM SMFGFF+QAIVTGKGPIENL DH+A P N W
Sbjct: 184 DTLAELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNFW 235
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 159/227 (70%), Positives = 187/227 (82%), Gaps = 2/227 (0%)
Query: 35 ITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
+ RRT + P S +YGPDR +LGPF++ PSYLTGE+PGDYGWDT GLSADPETFA
Sbjct: 31 VEARRTKSATPDSPFYGPDRVTFLGPFTD-VPSYLTGEYPGDYGWDTVGLSADPETFAAY 89
Query: 95 RELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
RE+E++H+RWAMLG LGC PE L K +G+ FGE+VWFKAG QIF EGGLDYLGNP+L+H
Sbjct: 90 REIELMHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVH 149
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSI+A Q +LMG VEGYR+GGGPLGE D +YPGG+FDPLGL DDPD AELKVKE
Sbjct: 150 AQSIIATVFIQALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKE 209
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
+KNGRLAMFSMFG+F+QAIVTGKGP+ENL H+ADP NN +AYAT+
Sbjct: 210 IKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNNGFAYATS 256
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/212 (77%), Positives = 182/212 (85%), Gaps = 2/212 (0%)
Query: 49 WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGPDR +LGP+S+ PSYL GEFPGDYGWDTAGLSADPETF RE E+IH+RWAML
Sbjct: 8 WYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 67
Query: 108 GALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
GALGCV PEILSK GV FGE+VWFKAG+QIF EGGLDYLGNP+L+HAQSILAI CQVV
Sbjct: 68 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 127
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
LMG +E YR+ GGPLGEGLD L+PG +FDPLGLADDPD FAELK+KE+KNGRLAMFSMFG
Sbjct: 128 LMGLIEAYRVNGGPLGEGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 187
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
F+VQAIVTGKGPIEN DH+ADP AW YA
Sbjct: 188 FYVQAIVTGKGPIENWADHVADPFNVTAWNYA 219
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 164/179 (91%), Positives = 171/179 (95%)
Query: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
D ETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAGAQIFSEGGLDYL
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYL 60
Query: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF 206
GNP+LIHAQSILAIWACQVVLMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP+ F
Sbjct: 61 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPLYPGGSFDPLGLADDPEAF 120
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 121 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 179
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 162/218 (74%), Positives = 185/218 (84%), Gaps = 1/218 (0%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S +YGP+R +LGP S PSYLTGEFPGDYGWD+AGLS+DPETF + RELE+IH+RWAM
Sbjct: 51 SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAM 110
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
LGALGCV PE+L+KNG E VWFKAGAQIF EGGLDYLGNP L+HAQSILA ACQV+
Sbjct: 111 LGALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQVI 170
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
LMG +EG+R+ GGP GEGLD L+PGG FDPL LA+DPD FAELKVKE+KNGRLAMFSMF
Sbjct: 171 LMGAIEGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKNGRLAMFSMF 230
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
GFFVQAIVTG+GPIENL H+A+P NNA+A+AT F P
Sbjct: 231 GFFVQAIVTGQGPIENLESHLANPGVNNAFAFATKFTP 268
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 173/255 (67%), Positives = 199/255 (78%), Gaps = 8/255 (3%)
Query: 17 LRQSNEFVRKVGVADGG-RITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTG 71
++Q + K GV+ ++ RRTVK S P S WYGPDRP +LG S + PSYLTG
Sbjct: 5 MKQLAKPTLKTGVSRRQVQVNARRTVKPSKGSTPDSAWYGPDRPLFLGSLSGEPPSYLTG 64
Query: 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG--EAV 129
EFPGDYGWDTAG SADP TFA+ R +EVIH+RWA+LGALG V PEIL++NGV F A+
Sbjct: 65 EFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAI 124
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPL 188
WFKAG++IF EGGL+YLGNPNLIHAQSILA A QV++MG EG+R G P EGLD L
Sbjct: 125 WFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVMGAAEGFRANGEAPGVEGLDTL 184
Query: 189 YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIAD 248
YPGG FDPLGLADDPD FAELKVKE+KNGRLAMF+ FGFFVQAIVTGKGPI+NL DH+AD
Sbjct: 185 YPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLAD 244
Query: 249 PVANNAWAYATNFVP 263
P NNA+A AT FVP
Sbjct: 245 PGVNNAFASATKFVP 259
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 339 bits (869), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/197 (85%), Positives = 179/197 (90%), Gaps = 2/197 (1%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ ++ VR VG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DDLVRSVG-DFGGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NG+KFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF+EGYR+GGGP
Sbjct: 119 NGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGGGP 178
Query: 181 LGEGLDPLYPGGAFDPL 197
LGEGLD +YPGGA+ L
Sbjct: 179 LGEGLDIIYPGGAYTHL 195
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/203 (79%), Positives = 179/203 (88%), Gaps = 3/203 (1%)
Query: 36 TMRRTVK--SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+MRRT K SAP ++WYGPDRP++LGPFS PSYLTGEFPGDYGWDTAGLSADPETF +
Sbjct: 22 SMRRTQKKSSAPDNVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGWDTAGLSADPETFRR 81
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
RE E+IH+RWAMLGALGCV PEILSK GV FGE+VWFKAG+QIF EGGLDYLGN NL+
Sbjct: 82 YREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLV 141
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
HAQSILAI CQV+LMG +E YR+ GGPLGEGLDPLYPG FDPLGLADDPD FAELK+K
Sbjct: 142 HAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIK 201
Query: 213 ELKNGRLAMFSMFGFFVQAIVTG 235
E+KNGRLAMFSMFGF+VQA+VTG
Sbjct: 202 EIKNGRLAMFSMFGFYVQAVVTG 224
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 187/234 (79%), Gaps = 5/234 (2%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFA 92
++T ++ +A Q WYGPDR +LGPFSE PSYLTGEFPGDYGWDT GLSADP TFA
Sbjct: 101 QVTCQKIGGAACQE-WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFA 159
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
RE EVIH+RWAMLGALGCV PE+L+K +GV E VWFKAG+QIF+EGGLDYLGNP+L
Sbjct: 160 AYRETEVIHARWAMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSL 219
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
+HAQSILAI ACQV+LMG E YR+ GGP GEGLD + PGGAFDPLGLADDPD FAELKV
Sbjct: 220 VHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKV 279
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
KE+KNGRLAMFSM GF+VQAI TGKGP+EN +HIADP N AT F P
Sbjct: 280 KEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLTNGIATKFTP 333
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/244 (69%), Positives = 195/244 (79%), Gaps = 14/244 (5%)
Query: 35 ITMRRTVKSAPQSI----------WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAG 83
++ RRTV S+P+S WYGPDRPK+LGP+S+ TPSYL GE+PGDYGWDTAG
Sbjct: 12 VSARRTV-SSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGEYPGDYGWDTAG 70
Query: 84 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGG 142
LSADPETF++ RE+EVIHSRWA+LG LG V PE+L K GVKF EAVWFKAGAQIFS G
Sbjct: 71 LSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSADG 130
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 202
L+YLGNP+L+HAQSI+A A QV+L+G EGYR+ GGP GE DPLYPGGAFDPLGLADD
Sbjct: 131 LNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDPLYPGGAFDPLGLADD 190
Query: 203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAY-ATNF 261
PD FAELKVKE+KNGRLA F+ GFFVQAIVTGKGPI+NL DH+ADP A N + A F
Sbjct: 191 PDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADPFAVNGFTIGAQKF 250
Query: 262 VPGK 265
VPG
Sbjct: 251 VPGN 254
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 187/234 (79%), Gaps = 5/234 (2%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFA 92
++T ++ +A Q WYGPDR +LGPFSE PSYLTGEFPGDYGWDT GLSADP TFA
Sbjct: 114 QVTCQQIGGAACQE-WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFA 172
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
RE EVIH+RWAMLGALGCV PE+L+K +GV E VWFKAG+QIF+EGGLDYLGNP+L
Sbjct: 173 AYRETEVIHARWAMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSL 232
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
+HAQSILAI ACQV+LMG E YR+ GGP GEGLD + PGGAFDPLGLADDPD FAELKV
Sbjct: 233 VHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKV 292
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
KE+KNGRLAMFSM GF+VQAI TGKGP+EN +HIADP N AT F P
Sbjct: 293 KEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLTNGIATKFTP 346
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 187/234 (79%), Gaps = 5/234 (2%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFA 92
++T ++ +A Q WYGPDR +LGPFSE PSYLTGEFPGDYGWDT GLSADP TFA
Sbjct: 114 QVTCQKIGGAACQE-WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFA 172
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
RE EVIH+RWAMLG LGCV PE+L+K +GV E VWFKAG+QIF+EGGLDYLGNP+L
Sbjct: 173 AYRETEVIHARWAMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSL 232
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
+HAQSILAI ACQV+LMG E YR+ GGP GEGLD + PGGAFDPLGLADDPD FAELKV
Sbjct: 233 VHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKV 292
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN--AWAYATNFVP 263
KE+KNGRLAMFSM GF+VQAI TGKGP+EN +HIADP N A AT F P
Sbjct: 293 KEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLATATKFTP 346
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 187/234 (79%), Gaps = 5/234 (2%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFA 92
++T ++ +A Q WYGPDR +LGPFSE PSYLTGEFPGDYGWDT GLSADP TFA
Sbjct: 113 QVTCQKIGGAACQE-WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFA 171
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
RE EVIH+RWAMLG LGCV PE+L+K +GV E VWFKAG+QIF+EGGLDYLGNP+L
Sbjct: 172 AYRETEVIHARWAMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSL 231
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKV 211
+HAQSILAI ACQV+LMG E YR+ GGP GEGLD + PGGAFDPLGLADDPD FAELKV
Sbjct: 232 VHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKV 291
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN--AWAYATNFVP 263
KE+KNGRLAMFSM GF+VQAI TGKGP+EN +HIADP N A AT F P
Sbjct: 292 KEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLATATKFTP 345
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 161/218 (73%), Positives = 184/218 (84%), Gaps = 1/218 (0%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S +YGPDR +LGP S TP+YLTGEFPGDYGWD+AGLSADPETF + RELE+IH+RWAM
Sbjct: 50 SAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAM 109
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
LGALGC+ PE+L+KNG E VWFKAGAQIF+EGGLDYLGNP L+HAQSILA A QV+
Sbjct: 110 LGALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVI 169
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
LMG +EGYR+ GGP GEGLD L+PGG FDPLGLA+DPD FAELKVKE+KNGRLAMFSMF
Sbjct: 170 LMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMF 229
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
GFFVQAIVTGKGP+ NL +H+A P +NA+ YA F P
Sbjct: 230 GFFVQAIVTGKGPLANLDEHLASPFTSNAFTYAQKFTP 267
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 336 bits (861), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 162/219 (73%), Positives = 183/219 (83%), Gaps = 3/219 (1%)
Query: 20 SNEFVRKVGVADGGRITMRRTVK--SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY 77
+ F+ V +MRRT K SAP S+WYGP+RP++LGPFS PSYLTGEFPGDY
Sbjct: 6 AKTFIGSQAVTTKKVTSMRRTQKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGDY 65
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQ 136
GWDTAGLSADPETF + RE E+IH+RWAMLGALGCV PEIL+K GV FGE+VWFKAG+Q
Sbjct: 66 GWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQ 125
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDP 196
IF EGGLDYLGN +L+HAQ ILAI CQV+LMG +E YR+ GGPLGEGLDPLYPGG FDP
Sbjct: 126 IFQEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYRVNGGPLGEGLDPLYPGGQFDP 185
Query: 197 LGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
LGLADDPD FAELKVKE+KNGRLAMFSMFGF+VQA+VTG
Sbjct: 186 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQALVTG 224
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/221 (74%), Positives = 182/221 (82%), Gaps = 3/221 (1%)
Query: 35 ITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+T ++ +A Q WYGPDR +LGPFSE PSYLTGEFPGDYGWDT GLSADP TFA
Sbjct: 99 VTCQKIGGAACQE-WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAA 157
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
RE EVIH+RWAMLGALGCV PE+LSK +GV E VWFKAG+QIF+EGGLDYLGNP+LI
Sbjct: 158 YRETEVIHARWAMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLI 217
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
HAQSILAI ACQVVLMG E YR+ GGP GEGLD + PGGAFDPLGLADDPD FAELKVK
Sbjct: 218 HAQSILAILACQVVLMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVK 277
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
E+KNGRLAMFSM GF+VQAI TGKGP+EN +HIADP N
Sbjct: 278 EIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPSGVN 318
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/237 (71%), Positives = 187/237 (78%), Gaps = 6/237 (2%)
Query: 30 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADP 88
A GR + T S + WYGP+R K+LGPFSE TPSYLTGEFPGDYGWDTAGL+ADP
Sbjct: 123 ATAGR---KSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADP 179
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
TFAK RE E+IH+RWAMLGALG VFPE L+K GV E VWFKAGAQIFSEGGLDYLGN
Sbjct: 180 ITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGN 239
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
NL+HAQSILAI A QVVLMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAE
Sbjct: 240 SNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAE 299
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
LKVKELKNGRLAMF+MFGF+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 300 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 356
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/237 (71%), Positives = 187/237 (78%), Gaps = 6/237 (2%)
Query: 30 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADP 88
A GR + T S + WYGP+R K+LGPFSE TPSYLTGEFPGDYGWDTAGL+ADP
Sbjct: 363 ATAGR---KSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADP 419
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
TFAK RE E+IH+RWAMLGALG VFPE L+K GV E VWFKAGAQIFSEGGLDYLGN
Sbjct: 420 ITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGN 479
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
NL+HAQSILAI A QVVLMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAE
Sbjct: 480 SNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAE 539
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
LKVKELKNGRLAMF+MFGF+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 540 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 596
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 92/116 (79%), Gaps = 2/116 (1%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
NL+HAQSILAI A QVVLMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAEL
Sbjct: 1 NLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
KVKELKNGRLAMF+MFGF+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 61 KVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 116
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/221 (74%), Positives = 185/221 (83%), Gaps = 5/221 (2%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGPDR K+LGPF+ ++ YLTGEFPGDYGWDTAGLSADP+TF++ RE+EVIH+RWAMLG
Sbjct: 29 FYGPDRAKFLGPFTPES-DYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLG 87
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGC+ PE+L+KNGV FGEAVWFKAGAQIF +GGL+YLGN NL+HAQSILA A QV+LM
Sbjct: 88 ALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILM 147
Query: 169 GFVEGYRIGGGP---LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
G E YR GG GE LD LYPGG FDPLGLADDPD AELKVKELKNGRLAMFSM
Sbjct: 148 GAAEAYRANGGAPGGFGEDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAMFSM 207
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FGFFVQAIVTG+GPI NL H+ADP NNAW +AT FVPG
Sbjct: 208 FGFFVQAIVTGQGPIANLDAHLADPSGNNAWNFATKFVPGN 248
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 184/229 (80%), Gaps = 3/229 (1%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
+ T S + WYGP+R K+LGPFSE TPSYLTGEFPGDYGWDTAGL+ADP TFAK RE
Sbjct: 351 KSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 410
Query: 97 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
E+IH+RWAMLGALG VFPE L+K GV E VWFKAGAQIFSEGGLDYLGN NL+HAQS
Sbjct: 411 AELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQS 470
Query: 157 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 216
ILAI A QVVLMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAELKVKELKN
Sbjct: 471 ILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKN 530
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
GRLAMF+MFGF+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 531 GRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 579
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 184/229 (80%), Gaps = 3/229 (1%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
+ T S + WYGP+R K+LGPFSE TPSYLTGEFPGDYGWDTAGL+ADP TFAK RE
Sbjct: 591 KSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 650
Query: 97 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
E+IH+RWAMLGALG VFPE L+K GV E VWFKAGAQIFSEGGLDYLGN NL+HAQS
Sbjct: 651 AELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQS 710
Query: 157 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 216
ILAI A QVVLMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAELKVKELKN
Sbjct: 711 ILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKN 770
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
GRLAMF+MFGF+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 771 GRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 819
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 184/229 (80%), Gaps = 3/229 (1%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
+ T S + WYGP+R K+LGPFSE TPSYLTGEFPGDYGWDTAGL+ADP TFAK RE
Sbjct: 111 KSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 170
Query: 97 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
E+IH+RWAMLGALG VFPE L+K GV E VWFKAGAQIFSEGGLDYLGN NL+HAQS
Sbjct: 171 AELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQS 230
Query: 157 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 216
ILAI A QVVLMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAELKVKELKN
Sbjct: 231 ILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKN 290
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
GRLAMF+MFGF+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 291 GRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 339
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
LMG E YR+ GGPLGE D LYPGGAFDPLGLADDP+ FAELKVKELKNGRLAMF+MFG
Sbjct: 1 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 60
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWA--YATNFVP 263
F+VQA+VTG+GP+EN H+ADP N Y T F P
Sbjct: 61 FYVQALVTGEGPVENWAAHVADPFNVNGLTAVYVTQFAP 99
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/237 (69%), Positives = 194/237 (81%), Gaps = 6/237 (2%)
Query: 34 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPET 90
R T ++ + + P++ +YGPDR K+LGPFSE TP YLTGEFPGDYGWDTAGLSADP+T
Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQT 75
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
FA+ RE+E+IH+RWA+LGALG + PE+LS+ GV+FGE VWFKAGAQIF++GGL+YLGN
Sbjct: 76 FARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNE 135
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG--EGLDPLYPGGAFDPLGLADDPDQFA 207
+LIHAQSI+A A QVVLMG E YR GG G + LD LYPGG FDPLGLADDPD FA
Sbjct: 136 SLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFA 195
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
ELKVKE+KNGRLAMFS GFFVQAIVTGKGP++NL DH+ADP NNA+A AT F PG
Sbjct: 196 ELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFASATKFTPG 252
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 162/191 (84%), Positives = 174/191 (91%), Gaps = 2/191 (1%)
Query: 29 VADGGRITMRRT-VKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
+++GGRI+MR+T KS S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSA
Sbjct: 26 LSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
Query: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
DPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 145
Query: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF 206
GNP+LIHAQSILAIWACQVVLMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP F
Sbjct: 146 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPKAF 205
Query: 207 AELKVKELKNG 217
AELKVKE+KNG
Sbjct: 206 AELKVKEIKNG 216
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/237 (69%), Positives = 193/237 (81%), Gaps = 6/237 (2%)
Query: 34 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPET 90
R T ++ + + P++ +YGPDR K+LGPFSE TP YLTGEFPGDYGWDTAGLSADP+T
Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQT 75
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
FA+ RE+E+IH+RWA+LGALG + PE+LS+ GV+FGE VWFKAGAQIF+ GGL+YLGN
Sbjct: 76 FARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNE 135
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG--EGLDPLYPGGAFDPLGLADDPDQFA 207
+LIHAQSI+A A QVVLMG E YR GG G + LD LYPGG FDPLGLADDPD FA
Sbjct: 136 SLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFA 195
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
ELKVKE+KNGRLAMFS GFFVQAIVTGKGP++NL DH+ADP NNA+A AT F PG
Sbjct: 196 ELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFASATKFTPG 252
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/206 (79%), Positives = 178/206 (86%), Gaps = 4/206 (1%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
++R ++A + WYGPDR K+LGPFSE PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 17 SIRNVSRNAVE--WYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 74
Query: 95 RELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
RE E+IH+RWAMLGALGCV PEILSK GV FGE+VWFKAG+QIF EGGLDYLGN NLIH
Sbjct: 75 REQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIH 134
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
AQSILAI CQVVLMG +E YR+ GGPLGEGLDPL+PG FDPLGLADDPD FAELKVKE
Sbjct: 135 AQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKE 194
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPI 239
+KNGRLAMFSMFGF+VQAIVTGKGPI
Sbjct: 195 IKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/250 (64%), Positives = 191/250 (76%), Gaps = 3/250 (1%)
Query: 15 TALRQSNEFVRKVGVADGGRITMRRT--VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 72
A R K G + RRT K+ P+S +YGP+RP +LG S + P+YL GE
Sbjct: 4 VAFRAQRAVAAKAGRKTTVSVQARRTQAKKAVPESPFYGPNRPLFLGGLSGEPPAYLNGE 63
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF-GEAVWF 131
FPGDYGWDTAGLSADPETF + R+LE+IH+RWA+LGALGCV PE+L++NGV + VWF
Sbjct: 64 FPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADGVWF 123
Query: 132 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPG 191
K GA+IF EGGL+YLGN NL+HAQSI+A Q+VLMG+ EGYRI GGPLGEGLDPLYPG
Sbjct: 124 KVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGWAEGYRINGGPLGEGLDPLYPG 183
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
GAFDPLGLADDPD AELKVKELKNGR+AM +MFGF VQAIVT KGP+ENL DH+A P
Sbjct: 184 GAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAAPGT 243
Query: 252 NNAWAYATNF 261
NN ++ A +
Sbjct: 244 NNVFSNAATY 253
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/237 (69%), Positives = 193/237 (81%), Gaps = 6/237 (2%)
Query: 34 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPET 90
R T ++ + + P++ +YGPDR K+LGPFSE TP YLTGEFPGDYGWDTAGLSADP+T
Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQT 75
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
FA+ RE+E+IH+RWA+LGALG + PE+LS+ GV+FGE VWFKAGAQIF++GGL+YLGN
Sbjct: 76 FARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNE 135
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG--EGLDPLYPGGAFDPLGLADDPDQFA 207
+LIHAQSI+A A QVVLMG E YR GG G + LD LYPGG FDPLGLADDPD FA
Sbjct: 136 SLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFA 195
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
ELKVKE+KNGRLAMFS GFFVQAIVTGKGP++NL DH+ADP N A+A AT F PG
Sbjct: 196 ELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 159/167 (95%), Positives = 163/167 (97%)
Query: 99 VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 158
VIHSRWAMLGALGC FPEIL KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 60
Query: 159 AIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGR 218
AIWA QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPD FAELKVKELKNGR
Sbjct: 61 AIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGR 120
Query: 219 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
LAMFSMFGFFVQAIVTGKGP++NLYDH+ADPVANNAWAYATNFVPG+
Sbjct: 121 LAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANNAWAYATNFVPGQ 167
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 329 bits (843), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 167/230 (72%), Positives = 183/230 (79%), Gaps = 1/230 (0%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
TM + + S R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNR
Sbjct: 40 TMLKHAAKSKVSSSTCDRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNR 99
Query: 96 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
ELEVIHSR AM ALGC+FPE+LS G FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ
Sbjct: 100 ELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQ 159
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
SILAIW +V+LMG VEGYRI GPLGE DPLYP G+FD LGLA+D + FAELKVKELK
Sbjct: 160 SILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELK 218
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
NGRLAMFSMFGFFVQAIV+ K +ENL DH+ V NNA + TNFVPG
Sbjct: 219 NGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPGN 268
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 161/184 (87%), Positives = 169/184 (91%), Gaps = 3/184 (1%)
Query: 7 QQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 66
Q ++F G R +E VR+VG GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP
Sbjct: 1 QTTSFLGTAPRR--DELVRRVG-DFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 57
Query: 67 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 126
SYLTGEF GDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFG
Sbjct: 58 SYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 117
Query: 127 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLD 186
EAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+GGGPLGEGLD
Sbjct: 118 EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD 177
Query: 187 PLYP 190
+YP
Sbjct: 178 KVYP 181
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/220 (74%), Positives = 181/220 (82%), Gaps = 5/220 (2%)
Query: 49 WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGPDRPK+LGPFSE TP YLTGEFPGDYGWDTAGLSADP TFA+ RE+E+IH+RWAML
Sbjct: 28 WYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 108 GALGCVFPEILSKNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
GALGCV PE+L+KNG + VWFKAGA IF++ GL+YLGNPNLIHAQSILA A QVV
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVV 147
Query: 167 LMGFVEGYRIGGGPLG---EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+MG E +R GG G EG D LYPG FDP+GLA+DPD FAELKVKE+KNGRLAMFS
Sbjct: 148 VMGAAESFRFNGGAPGGFLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLAMFS 207
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
MFGFFVQAIVTG+GPI NL H+ADP NNAWA AT FVP
Sbjct: 208 MFGFFVQAIVTGQGPIANLDAHLADPSVNNAWAAATKFVP 247
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/175 (89%), Positives = 166/175 (94%)
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI
Sbjct: 61 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 120
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 121 AGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 166/239 (69%), Positives = 183/239 (76%), Gaps = 10/239 (4%)
Query: 34 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R T R++ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 31 RFTTRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 90 TFAKNRELEVIHSR---WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
TFAKN L W F + N VK FKAG+QIFSEGGLDYL
Sbjct: 91 TFAKNVSLRSSTPDGPCWVPWDVSSQSFCPVTVLNSVKL---CGFKAGSQIFSEGGLDYL 147
Query: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF 206
GNP+L QSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ F
Sbjct: 148 GNPSLGSRQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 207
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 266
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/236 (68%), Positives = 186/236 (78%), Gaps = 10/236 (4%)
Query: 32 GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPET 90
G R R +V+ +YGPDR K+LGPFS+ PSYL GEFPGDYGWD+AGLSADPET
Sbjct: 20 GSRQVTRASVE------FYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPET 73
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEA-VWFKAGAQIFSEGGLDYLGN 148
FA+ RE+EVIH+RWAMLGALGC+ PE+L NG FGEA VWFKAGA IFS+ GL+YLGN
Sbjct: 74 FARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGN 133
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
P+LIHAQSI+A+ Q+V+MG E YR G GP+ D LYPGGAFDPLGLADDPD A
Sbjct: 134 PSLIHAQSIVAVLLTQLVIMGAAEAYRYAGEGPVETSGDSLYPGGAFDPLGLADDPDTLA 193
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
ELKVKELKNGRLAMFSMFGFFVQA++TGK P+ENL DH+ADP N +A AT FVP
Sbjct: 194 ELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTANGFAVATKFVP 249
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 320 bits (820), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 188/230 (81%), Gaps = 9/230 (3%)
Query: 41 VKSAPQ---SIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
VK+ P S+WYGPDRPK+LGPFS+ P+YLTGEFPGDYGWDT+GLSADPETF + R
Sbjct: 25 VKAKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRT 84
Query: 97 LEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
+EVIH+RWAMLGALGC+FPE+L K +GV+FGEAVWFKAGAQIF++GGL+YLGNP L+HAQ
Sbjct: 85 VEVIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQ 144
Query: 156 SILAIWACQVVLMGFVEGYRIGG-GP--LGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
SI+A QV+LMG VE YR G GP GEG D LYPGGAFDPLGLADDPD AELKVK
Sbjct: 145 SIVATLVVQVLLMGAVEIYRANGEGPSGFGEGQDNLYPGGAFDPLGLADDPDTLAELKVK 204
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA-YATNF 261
ELKNGRLAM SM GFFVQAIVTGKGP++NL H+ +P N +A YA+
Sbjct: 205 ELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEPGEFNFYANYASTL 254
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 320 bits (820), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 174/272 (63%), Positives = 200/272 (73%), Gaps = 15/272 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLG 59
+T A+ A G+ A++ S G GRITMR+ K + P S WYG DR KYLG
Sbjct: 4 STMALSSPALTGK-AVKLSPAASEVFGT---GRITMRKASKPTGPSGSPWYGSDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L+
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLG----NPNLIHAQSILAIWACQVVLMG-FVEGY 174
+NGVKFGEAVW + F++ +G P+L+HAQ + G +
Sbjct: 120 RNGVKFGEAVWVQG---WFTDLQRRRIGPTWATPSLVHAQEHFSHLGYSSYPHGSLLRAT 176
Query: 175 RI-GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV 233
R+ G GPLGE D LYPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFSMFGFFVQAIV
Sbjct: 177 RVPGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 236
Query: 234 TGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
TGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 237 TGKGPLENLADHLADPVNNNAWAFATNFVPGK 268
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 154/165 (93%), Positives = 161/165 (97%)
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 137
GWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QI
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQI 60
Query: 138 FSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPL 197
FSEGGLDYLGNPNLIHAQSILAIWA QVVLMG +EGYR+GGGPLGEGLD +YPGG+FDPL
Sbjct: 61 FSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDPL 120
Query: 198 GLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
GLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct: 121 GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 165
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 188/265 (70%), Gaps = 36/265 (13%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F GQT +N+ +R+V G+ TM +WYGPDR KYLGPF
Sbjct: 12 SSTGLRPTQFLGQTRGSNANQ-LREVVPMGTGKFTMG-------NELWYGPDRVKYLGPF 63
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEGYRI G P
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 183
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 184 ---------------------------GLKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 216
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NL DH+ +PVANNAWAYAT FVPG
Sbjct: 217 NLLDHLDNPVANNAWAYATKFVPGS 241
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/264 (63%), Positives = 188/264 (71%), Gaps = 36/264 (13%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F GQT +N+ +R+V G+ TM +WYGPDR KYLGPF
Sbjct: 7 SSTGLRPTQFVGQTRGSNANQ-LREVVPMGTGKFTMG-------NELWYGPDRVKYLGPF 58
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEGYRI G P
Sbjct: 119 VKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 178
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
LKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 179 ---------------------------GLKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 211
Query: 241 NLYDHIADPVANNAWAYATNFVPG 264
NL DH+ +PVANNAWAYAT FVPG
Sbjct: 212 NLLDHLDNPVANNAWAYATKFVPG 235
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/229 (72%), Positives = 168/229 (73%), Gaps = 57/229 (24%)
Query: 37 MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
MRRTVKS PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE
Sbjct: 1 MRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
Query: 97 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
LEVIH RWAMLGALGCVFPEILSKNGVKFGEAV
Sbjct: 61 LEVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--------------------------C 94
Query: 157 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 216
ILAIWACQVVLMGFVEGYR+ ELKVKE+KN
Sbjct: 95 ILAIWACQVVLMGFVEGYRV-------------------------------ELKVKEIKN 123
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPVANNAWAYATNFVPGK
Sbjct: 124 GRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANNAWAYATNFVPGK 172
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 154/191 (80%), Positives = 170/191 (89%), Gaps = 6/191 (3%)
Query: 28 GVADGGRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
GV+ GR TMR+TV + P+++ WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA
Sbjct: 11 GVSGDGRFTMRKTV-AKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 69
Query: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
GLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGG
Sbjct: 70 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 129
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 202
LDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADD
Sbjct: 130 LDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADD 189
Query: 203 PDQFAELKVKE 213
P FAELKV E
Sbjct: 190 PKAFAELKVNE 200
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 148/183 (80%), Positives = 167/183 (91%), Gaps = 1/183 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGCV P++LSKNGV+F EA+WFKAGAQIF EGGLDYLGN +L+HAQ+I+A ACQV+L
Sbjct: 97 GALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQVIL 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 157 MGLVEGYRVNGGPAGEGLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 216
Query: 228 FVQ 230
FVQ
Sbjct: 217 FVQ 219
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 315 bits (808), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 150/196 (76%), Positives = 170/196 (86%), Gaps = 1/196 (0%)
Query: 69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGE 127
LTGEFPGDYGWDTAGLSADPETF K RE E+IH+RWAMLGALGCV PEIL++ G FGE
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 187
+VWF+AGAQIF +GGLDYLG+P LIHAQSI AI QV+LMG +EGYR+ GGP GEGLDP
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP 120
Query: 188 LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIA 247
LYPG +FDPLGLADDPD FAELK+KE+KNGRLAMFSMFGF+VQAIVTGKGP+EN +H+A
Sbjct: 121 LYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVA 180
Query: 248 DPVANNAWAYATNFVP 263
DP NA++YAT F P
Sbjct: 181 DPFTANAFSYATKFTP 196
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/272 (59%), Positives = 193/272 (70%), Gaps = 16/272 (5%)
Query: 5 AIQQSAFAGQT-----ALRQSNEFVRKVGVADGGR--------ITMRRTVKSAPQSIWYG 51
A++Q+A + T AL + E ++ + DG + ++ VK+A WYG
Sbjct: 32 ALRQAAVSPATRGRYEALVNAGEIMKNIAQIDGKQNIGELSREVSCVMGVKAACNVEWYG 91
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
+RPKYLGPF TP+YLTGEFPGDYGWD+AGLSADP TF RE EVIH+RWAMLGALG
Sbjct: 92 ENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALG 151
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
C+FPE+L+ G F VWFKAG IF E G+DYLGNPNL+HAQS LA+ + QVVLMG
Sbjct: 152 CIFPELLNSAG--FNLPVWFKAGGTIF-ENGIDYLGNPNLVHAQSALAVLSVQVVLMGAS 208
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
E YR GGPLGE D LYPGGAFDPLG A DP + AELKVKE+KNGRLAM +M G++VQA
Sbjct: 209 EAYRFNGGPLGEPADVLYPGGAFDPLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYYVQA 268
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
+ TGKGPIENL +H+ADP NN +A A F P
Sbjct: 269 LATGKGPIENLSEHLADPSKNNGFAVAGVFTP 300
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/160 (94%), Positives = 157/160 (98%)
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGC FPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQV
Sbjct: 1 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 60
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
VLMGF+EGYRIGGGPLGEGLDPLYPGGAFDPL LA+DP+ F+ELKVKELKNGRLAMFSMF
Sbjct: 61 VLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMF 120
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GFFVQAIVTGKGPIENL+DHIADPVANNAWAYATNFVPGK
Sbjct: 121 GFFVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK 160
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 160/209 (76%), Positives = 176/209 (84%), Gaps = 13/209 (6%)
Query: 1 MATS--AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI---WYGPDR 54
MATS A+ + AGQ A++ + V D GRITMR+T KS P S WYGPDR
Sbjct: 1 MATSTMAVSSPSLAGQ-AIKLAPS------VQDTGRITMRKTTTKSKPVSSGSPWYGPDR 53
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114
KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF
Sbjct: 54 VKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 113
Query: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 174
PE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGY
Sbjct: 114 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 173
Query: 175 RIGGGPLGEGLDPLYPGGAFDPLGLADDP 203
RI GGPLGE DPLYPGG+FDPLGLADDP
Sbjct: 174 RIAGGPLGEVTDPLYPGGSFDPLGLADDP 202
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 154/156 (98%), Positives = 154/156 (98%)
Query: 71 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 130
GEFPGDYGWDTAGLSADPETFAKNRE EVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 60
Query: 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYP 190
FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYP
Sbjct: 61 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYP 120
Query: 191 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
GGAFDPLGLAD PDQFAELKVKELKNGRLAMFSMFG
Sbjct: 121 GGAFDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 312 bits (799), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 155/217 (71%), Positives = 178/217 (82%), Gaps = 3/217 (1%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGPD Q P TGEFPGDYGWDTAGLSADPETF + RELE+IH+R +LG
Sbjct: 57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLG 115
Query: 109 ALGCVFPEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
ALG V PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A A QVV
Sbjct: 116 ALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVV 175
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
LMG VEGYR+ GGP GEGLDPLYPG AFDPLGLADDPD FAELKVKE+KNGRLAMF+ G
Sbjct: 176 LMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLG 235
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FFVQAIVTGKGPIENL DH+A+P NNA+AYAT F P
Sbjct: 236 FFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/199 (80%), Positives = 171/199 (85%), Gaps = 4/199 (2%)
Query: 69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGE 127
LTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K V F E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLD 186
VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P +GEG +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG-N 119
Query: 187 PLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245
LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH
Sbjct: 120 NLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 179
Query: 246 IADPVANNAWAYATNFVPG 264
+ +PVANNAW YAT FVPG
Sbjct: 180 LDNPVANNAWVYATKFVPG 198
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/206 (73%), Positives = 167/206 (81%), Gaps = 1/206 (0%)
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GP S TPSYL GEFPGDYGWDTAGLSADPETFA+ RE+EVIH+RWAMLGALGC+ PE+L
Sbjct: 5 GPLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELL 64
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
S+NG F E VW+KAGAQI S GLDYLG PNL+HAQSI+A A QV+LMG E YR G
Sbjct: 65 SQNGFTFQEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAG 124
Query: 179 GPLG-EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G +GLD LYPGG FDPL A DPD AELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 125 SAPGVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 184
Query: 238 PIENLYDHIADPVANNAWAYATNFVP 263
P+ENL DH+A P ANN +A AT FVP
Sbjct: 185 PLENLNDHLASPYANNGFAAATKFVP 210
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/215 (69%), Positives = 174/215 (80%), Gaps = 6/215 (2%)
Query: 49 WYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP RPK+LGP+S+ TPSYLTGEFPGDYGWDTAGLSADP+TFA+ RE+EVIH+RWAML
Sbjct: 38 WYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAML 97
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
GALGCV PE+L WF AGA IFS+ GL YLG P LI+A+SI+A QV+L
Sbjct: 98 GALGCVVPELLDGTN----HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVIL 153
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
M +VEGYR+ GGP G GLD +YPGG+FDPLGLADDPD F+ELKVKE+KNGRLAM SMFGF
Sbjct: 154 MSYVEGYRVNGGPAGTGLDAVYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMLSMFGF 213
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWA-YATNF 261
F+QAIVTG+GPIENL H+AD ANN ++ YA+
Sbjct: 214 FIQAIVTGEGPIENLNKHLADASANNFYSLYASTL 248
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 167/268 (62%), Positives = 193/268 (72%), Gaps = 17/268 (6%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA+ AF G TA RQS + + R+ V A +YGPDR K+LGP
Sbjct: 1 MASVVAASRAFTGITA-RQSTKSAK-----------ARKQVTRASVE-FYGPDRAKFLGP 47
Query: 61 FSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
FSE PSYL GEFPGDYGWDTAGLSADPETFA+ RE+E+IHSRWA+LGALG + PE L
Sbjct: 48 FSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQ 107
Query: 120 KNG-VKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
++G V FGEA VWFKAGA IF + GL+YLGNP LIHAQSI+A Q+VL+G E YR
Sbjct: 108 RSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYA 167
Query: 178 G-GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
G GP+ D LYPGG FDPLGL DDP+ AELKVKE+KNGRLA S+FGFFVQA+VTGK
Sbjct: 168 GEGPVDTSGDKLYPGGFFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFGFFVQALVTGK 227
Query: 237 GPIENLYDHIADPVANNAWAYATNFVPG 264
GP+ENL DH+ADP NN +AYA FVPG
Sbjct: 228 GPLENLDDHLADPWNNNGFAYAAKFVPG 255
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/217 (68%), Positives = 172/217 (79%), Gaps = 5/217 (2%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYG DRP YLG F+ ++PSYL GEFPGDYGWDTAGLSADPETF++ RE+EVIH+RWAM
Sbjct: 64 SFWYGADRPGYLGAFT-RSPSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAM 122
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
LGALG V PE+L + WF AGA IF G+ YLG P LI+A++I+A A QV+
Sbjct: 123 LGALGIVVPELLDQTN----HVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQVI 178
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
LMG +EGYR+ GGP GEGLD +YPG +FDPLGLADDPD FAELKVKE+KNGRLAMFS FG
Sbjct: 179 LMGAIEGYRVNGGPAGEGLDKVYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSNFG 238
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FFVQAIVTGKGPI NL DH+A+P NN +A AT F P
Sbjct: 239 FFVQAIVTGKGPIANLNDHLANPTVNNGFAAATKFTP 275
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/200 (74%), Positives = 167/200 (83%), Gaps = 4/200 (2%)
Query: 34 RITMRRTVK---SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
++ RRTVK SAP S+WYGPDRPKYLG S +TP+YLTGEF GDYGWDTAGLSADPET
Sbjct: 24 KVEARRTVKGASSAPDSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPET 83
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
F + RELE+IH+RWAMLGALGC+ PE+L+ NG E VWFKAGAQIF +GGL+YLGN N
Sbjct: 84 FKRYRELELIHARWAMLGALGCITPELLANNGTPIAEPVWFKAGAQIFQDGGLNYLGNEN 143
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAEL 209
L+HAQSI+ QV+LMG VEGYR+ GGP GEGLD LYPGG FDPLGLADDPD FAEL
Sbjct: 144 LVHAQSIIVTLLVQVILMGTVEGYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAEL 203
Query: 210 KVKELKNGRLAMFSMFGFFV 229
KVKE+KNGRLAMFSMFGFFV
Sbjct: 204 KVKEIKNGRLAMFSMFGFFV 223
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/160 (91%), Positives = 155/160 (96%)
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+L+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA QV
Sbjct: 1 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 60
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
VLMG +EGYR+GGGPLGEGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF
Sbjct: 61 VLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 120
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GFFVQAIVTGKGPIENL+DH+ADP ANNAWAYATNFVPGK
Sbjct: 121 GFFVQAIVTGKGPIENLFDHLADPTANNAWAYATNFVPGK 160
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 168/267 (62%), Positives = 192/267 (71%), Gaps = 14/267 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S + F GQT N +R V +++ + +WYGPDR KYLGPF
Sbjct: 8 SSSVFCPTTFLGQTKSSSFNP-LRDV-------VSLGSHKYNMGNYLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPE-TFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S QTPSY TGEFPGDYGWDTAGLSADPE FAKN LEVI+ RWAMLGA GC+ PE+L K
Sbjct: 60 SVQTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQK 119
Query: 121 -NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI
Sbjct: 120 WVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINRF 179
Query: 179 GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
+GEG D LYPGG FD L L DD F ELKVKE+KNG LAMFSMFGFFVQAIVTGK
Sbjct: 180 DGVGEGND-LYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKD 238
Query: 238 PIENLYDHIADPVAN-NAWAYATNFVP 263
P+E+L DH+ + VAN NAWA+ T FVP
Sbjct: 239 PLESLLDHLDNFVANINAWAFTTKFVP 265
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/187 (78%), Positives = 161/187 (86%), Gaps = 1/187 (0%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
+YGPDR +LGP S TP+YLTGEFPGDYGWD+AGLSADPETF + RELE+IH+RWAMLG
Sbjct: 46 FYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLG 105
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGCV PE+L+KNG E VWFKAGAQIF EGGLDYLGN LIHAQSILA A QV+LM
Sbjct: 106 ALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSILATLAVQVILM 165
Query: 169 GFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
G +EGYR+ GGP GEGLD L+PGG FDPLGLA+DPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 166 GAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGF 225
Query: 228 FVQAIVT 234
FVQAIVT
Sbjct: 226 FVQAIVT 232
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/161 (87%), Positives = 153/161 (95%)
Query: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA 135
DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 60
Query: 136 QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 195
QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ GGPLGE +DPLYPGG+FD
Sbjct: 61 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFD 120
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
PLGLADDP+ FAELKVKE+KNGRLAM SMFGFFVQAIV K
Sbjct: 121 PLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVLVK 161
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 149/233 (63%), Positives = 177/233 (75%), Gaps = 7/233 (3%)
Query: 36 TMRRTVKSAPQS----IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 91
T R K+AP+S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T
Sbjct: 117 TSGRKAKAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTL 176
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPN 150
A+ RE EVIH+RWAMLGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+
Sbjct: 177 ARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPS 236
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
LIHAQS++ + + +MG VE YR GG G G LD LYPGG FDPLGLA+DPD AE
Sbjct: 237 LIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAE 296
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
LKVKELKNGRLAM +M GF+VQ +VT GP+ENL H+ADP ANN +++ + F
Sbjct: 297 LKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGF 349
Score = 293 bits (749), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 146/223 (65%), Positives = 172/223 (77%), Gaps = 3/223 (1%)
Query: 42 KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101
KS S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T A+ RE EVIH
Sbjct: 588 KSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIH 647
Query: 102 SRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 160
+RWAMLGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS++
Sbjct: 648 ARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLT 707
Query: 161 WACQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGR 218
+ + +MG VE YR GG G G LD LYPGG FDPLGLA+DPD AELKVKELKNGR
Sbjct: 708 FLSTLAIMGAVEAYRYGGGVGDSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGR 767
Query: 219 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
LAM +M GF+VQ +VT GP+ENL H+ADP ANN +++ + F
Sbjct: 768 LAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGF 810
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/221 (63%), Positives = 162/221 (73%), Gaps = 3/221 (1%)
Query: 44 APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
+P + YGPDR K+LG F+ P YLTGE PGDYGWDTAGL ADP A+ R +VIH R
Sbjct: 832 SPLNKLYGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGR 891
Query: 104 WAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
WAMLG LGC FPE +++ GV FGE VWFKAGAQIFSE GL+YLG P LIHAQS++ +
Sbjct: 892 WAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFL 951
Query: 163 CQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLA 220
+VLMG VE YR G G G LDPLYPGG FDPLGLADDP+ F ELKVKE+KNGRLA
Sbjct: 952 STLVLMGAVEAYRSAGSVGDFGADLDPLYPGGPFDPLGLADDPEAFLELKVKEVKNGRLA 1011
Query: 221 MFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
M ++FGFFVQ I+TGKGP+EN DH+ DP NN + F
Sbjct: 1012 MVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQLTPGF 1052
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 43 SAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101
+A S WYGP+RPK+LGP S P YL GE+ GDYG+DTAGL+ADP+ F + R+ E+ +
Sbjct: 353 AATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQN 412
Query: 102 SRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 160
RWAMLG LGC+ PE+LS GV + E VWFK GA I + G +DYL NP LIHA ++L
Sbjct: 413 GRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLT 472
Query: 161 WACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRL 219
++V E +R G GPLG+ D YPGG FDPLGL+ DP FAE KVKE+KNGRL
Sbjct: 473 LVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRL 532
Query: 220 AMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
AM +M G FVQA VTG+ P+ENL H+A+P N +YA
Sbjct: 533 AMLAMLGLFVQAGVTGQSPLENLSAHLANPGVNFWTSYA 571
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
IHAQS++ + +VLMG VE YR G G G LDPLYPGG FDPLGLADDP+ F EL
Sbjct: 1 IHAQSVVLTFLSTLVLMGAVEAYRSAGSVGDFGADLDPLYPGGPFDPLGLADDPEAFLEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KVKE+KNGRLAM ++FGF VQ I+TGKGP+EN DH+ DP NN + + F
Sbjct: 61 KVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQLTSGF 112
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/218 (68%), Positives = 170/218 (77%), Gaps = 11/218 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPK 56
+T A+ + AG + V V+ GR TMR+T P+++ WYGP+R K
Sbjct: 15 STMALSSPSLAGTAVKLTPSSSV----VSGDGRFTMRKTA-GKPKTVSSGSPWYGPERVK 69
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE
Sbjct: 70 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 129
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+
Sbjct: 130 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRV 189
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQ-FAELKVKE 213
GGPLGE +DPLYPGG+FDPLGLA FA V E
Sbjct: 190 AGGPLGEVVDPLYPGGSFDPLGLARRSKTPFASSNVNE 227
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 296 bits (757), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 147/227 (64%), Positives = 175/227 (77%), Gaps = 7/227 (3%)
Query: 42 KSAPQS----IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
KSAP+S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T A+ RE
Sbjct: 86 KSAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREA 145
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
EVIH+RWAMLGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS
Sbjct: 146 EVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQS 205
Query: 157 ILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKEL 214
++ + + +MG VE YR GG G G LD LYPGG FDPLGLA+DPD AELKVKEL
Sbjct: 206 VVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKEL 265
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KNGRLAM +M GF+VQ +VT GP+ENL H+ADP +NN +++ + F
Sbjct: 266 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 312
Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 143/227 (62%), Positives = 171/227 (75%), Gaps = 12/227 (5%)
Query: 42 KSAPQS----IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
KSAP+S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T A+ RE
Sbjct: 321 KSAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREA 380
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
EVIH+RWAML V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS
Sbjct: 381 EVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQS 435
Query: 157 ILAIWACQVVLMGFVEGYRIGGG--PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKEL 214
++ + + +MG VE YR GGG G LD LYPGG FDPLGLA+DPD AELKVKEL
Sbjct: 436 VVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKEL 495
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KNGRLAM +M GF+VQ +VT GP+ENL H+ADP +NN +++ + F
Sbjct: 496 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 542
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 244
LD LYPGG FDPLGLA+DPD AELKVKELKNGRLAM +M GF+VQ +VT GP+ENL
Sbjct: 1 LDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF 60
Query: 245 HIADPVANNAWAYATNF 261
H+ADP +NN +++ + F
Sbjct: 61 HLADPSSNNIFSFTSGF 77
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/227 (64%), Positives = 175/227 (77%), Gaps = 7/227 (3%)
Query: 42 KSAPQS----IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
KSAP+S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T A+ RE
Sbjct: 34 KSAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREA 93
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
EVIH+RWAMLGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS
Sbjct: 94 EVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQS 153
Query: 157 ILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKEL 214
++ + + +MG VE YR GG G G LD LYPGG FDPLGLA+DPD AELKVKEL
Sbjct: 154 VVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKEL 213
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KNGRLAM +M GF+VQ +VT GP+ENL H+ADP +NN +++ + F
Sbjct: 214 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGF 260
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 79/99 (79%), Gaps = 5/99 (5%)
Query: 42 KSAPQS----IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
KSAP+S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T A+ RE
Sbjct: 269 KSAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREA 328
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGA 135
EVIH+RWAMLGALG V PE+L+ NGV FGE AVW+KAGA
Sbjct: 329 EVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 163/267 (61%), Positives = 186/267 (69%), Gaps = 34/267 (12%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
+++ ++ + F GQT SN +R V G+ TM +WYGPDR KYLGPF
Sbjct: 9 SSTVLRPTPFLGQTRGANSNP-LRDVVPMGTGKYTMG-------NELWYGPDRVKYLGPF 60
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTP FA+NR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 61 SAQTPF----------------------AFARNRALEVIHGRWAMLGALGCITPEVLEKW 98
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
V F E +WFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G P
Sbjct: 99 LRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 158
Query: 181 -LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
+G+G + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 159 GVGDG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 217
Query: 239 IENLYDHIADPVANNAWAYATNFVPGK 265
+ENL DH+ +PVANNAW YAT FVPG
Sbjct: 218 LENLLDHLDNPVANNAWVYATKFVPGS 244
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/154 (90%), Positives = 149/154 (96%)
Query: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA 135
DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 60
Query: 136 QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 195
QIFSEGGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FD
Sbjct: 61 QIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 120
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
PLGLADDPD FAELKVKE+KNGRLAMFSMFGFFV
Sbjct: 121 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/223 (65%), Positives = 172/223 (77%), Gaps = 3/223 (1%)
Query: 42 KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101
KS S WYGPDR K+LGP + + PSYLTGE PGDYGWDTAGL +DP T A+ RE EVIH
Sbjct: 384 KSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIH 443
Query: 102 SRWAMLGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 160
+RWAMLGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS++
Sbjct: 444 ARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLT 503
Query: 161 WACQVVLMGFVEGYRIGG--GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGR 218
+ + +MG VE YR GG G G LD LYPGG FDPLGLA+DPD AELKVKELKNGR
Sbjct: 504 FLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGR 563
Query: 219 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
LAM +M GF+VQ +VT GP+ENL H+ADP ANN +++ + F
Sbjct: 564 LAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGF 606
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 43 SAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101
+A S WYGP+RPK+LGP S P YL GE+ GDYG+DTAGL+ADP+ F + R+ E+ +
Sbjct: 149 AATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQN 208
Query: 102 SRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 160
RWAMLG LGC+ PE+LS GV + E VWFK GA I + G +DYL NP LIHA ++L
Sbjct: 209 GRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLT 268
Query: 161 WACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRL 219
++V E +R G GPLG+ D YPGG FDPLGL+ DP FAE KVKE+KNGRL
Sbjct: 269 LVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRL 328
Query: 220 AMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
AM +M G FVQA VTG+ P+ENL H+A+P N +YA
Sbjct: 329 AMLAMLGLFVQAGVTGQSPLENLSAHLANPGVNFWTSYA 367
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 110/144 (76%), Gaps = 3/144 (2%)
Query: 121 NGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS++ + + +MG VE YR GGG
Sbjct: 2 NGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGG 61
Query: 180 --PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G LD LYPGG FDPLGLA+DPD AELKVKELKNGRLAM +M GF+VQ +VT G
Sbjct: 62 VGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAG 121
Query: 238 PIENLYDHIADPVANNAWAYATNF 261
P+ENL H+ADP ANN +++ + F
Sbjct: 122 PVENLTFHLADPSANNIFSFTSGF 145
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/154 (90%), Positives = 148/154 (96%)
Query: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA 135
DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPE+L++NGVKFGEAVWFKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFGEAVWFKAGS 60
Query: 136 QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 195
QIFSEGGLDYLGNP LIHAQSILAIWACQV+LMG VEGYRI GGPLGE +DPLYPGG+FD
Sbjct: 61 QIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD 120
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
PLGLADDPD FAELKVKE+KNGRLAMFSMFGFFV
Sbjct: 121 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/160 (88%), Positives = 152/160 (95%)
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 60
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
VLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct: 61 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 120
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPG
Sbjct: 121 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGN 160
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 292 bits (748), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 139/160 (86%), Positives = 151/160 (94%)
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL IWA QV
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQV 60
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
+LMG VEGYRI GGPLGE DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct: 61 ILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 120
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GFFVQAIVTGKGP+ENL DH++DPV NNAWAYATNFVPGK
Sbjct: 121 GFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 160
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/219 (69%), Positives = 159/219 (72%), Gaps = 52/219 (23%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAM
Sbjct: 17 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 76
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
LGALGCVFPE+LS+NGVKFGEAVWFKA AIWACQV+
Sbjct: 77 LGALGCVFPELLSRNGVKFGEAVWFKA-------------------------AIWACQVI 111
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
LMG VEGYRIGGGPLGE VKE+KNGRLAMFSMFG
Sbjct: 112 LMGAVEGYRIGGGPLGE---------------------------VKEIKNGRLAMFSMFG 144
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 145 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 183
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/158 (87%), Positives = 150/158 (94%)
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQV
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 60
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
VLMG +EGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMF
Sbjct: 61 VLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 120
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
GFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATN P
Sbjct: 121 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNLCP 158
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/224 (65%), Positives = 171/224 (76%), Gaps = 7/224 (3%)
Query: 47 SIWYGPDRPKYLGPFSEQT-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S WYGP+R K+LGP+S+++ PSYLTGE PGDYGWDTAGL ADP T + RE E+IH RWA
Sbjct: 466 SAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWA 525
Query: 106 MLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA+GC PE L++ GV+FGE +WFKAGAQIFS GL+Y G P LIHA+S+LAI A Q
Sbjct: 526 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 585
Query: 165 VVLMGFVEGYRIGG---GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAM 221
V+LMG VE YR G G GE LD LYPGG FDPLGLADDPD FAELKVKE+KNGRLAM
Sbjct: 586 VLLMGAVEAYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAM 645
Query: 222 FSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW--AYATNFVP 263
+M GF+ QAIVTG+GP+EN H+ DP A+N A T F P
Sbjct: 646 MAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAALVTQFAP 689
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/223 (66%), Positives = 167/223 (74%), Gaps = 6/223 (2%)
Query: 47 SIWYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S WYGPDR K+LGP+S+ TP YL GE PGDYGWD+AGL ADP T + RE E+IH RWA
Sbjct: 223 SQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWA 282
Query: 106 MLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGALG VFPE LS+N + E VWFKAGAQIFSEGGLDYLG+ L+HAQSIL I Q
Sbjct: 283 MLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQ 342
Query: 165 VVLMGFVEGYRIGGG--PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMF 222
V+LMG E YR G G G+ LD LYPGG FDPLGLA+DPD AELKVKE+KNGRLAMF
Sbjct: 343 VLLMGAAEAYRTGNGLGNFGKDLDSLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMF 402
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANNAW--AYATNFVP 263
+MFGF+VQAIVTG+ P+ENL H+A P N AY T F P
Sbjct: 403 AMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNAAYMTQFTP 445
Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 154/205 (75%), Gaps = 6/205 (2%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN-GV 123
PSYLTGE PGDYGWDTAGL ADP T + RE E+IH RWAMLGA+GC PE L++ GV
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG---GP 180
+FGE +WFKAGAQIFS GL+Y G P LIHA+S+LAI A QV+LMG VE YR G G
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
GE LD LYPGG FDPLGLADDPD FAELKVKE+KNGRLAM +M GF+ QAIVTG+GP+E
Sbjct: 121 FGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPVE 180
Query: 241 NLYDHIADPVANNAW--AYATNFVP 263
N H+ DP A+N A T F P
Sbjct: 181 NWLYHLQDPSAHNGLTAALVTQFAP 205
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/150 (92%), Positives = 145/150 (96%)
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR
Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR 60
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
+GGGPLGEGLDPLYPG AFDPLGLADDP+ AELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 61 VGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTG 120
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct: 121 KGPIENLYDHLADPVANNAWAYATNFVPGK 150
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/162 (85%), Positives = 149/162 (91%)
Query: 104 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
WAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA
Sbjct: 46 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 105
Query: 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
QVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFS
Sbjct: 106 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 165
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
MFGFFVQAIVTGKGP +ADPV NNAWAYATNFVPGK
Sbjct: 166 MFGFFVQAIVTGKGPPREPRRPLADPVNNNAWAYATNFVPGK 207
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/224 (65%), Positives = 171/224 (76%), Gaps = 7/224 (3%)
Query: 47 SIWYGPDRPKYLGPFSEQT-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S WYGP+R K+LGP+S+++ PSYLTGE PGDYGWDTAGL ADP T + RE E+IH RWA
Sbjct: 239 SAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWA 298
Query: 106 MLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA+GC PE L++ GV+FGE +WFKAGAQIFS GL+Y G P LIHA+S+LAI A Q
Sbjct: 299 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 358
Query: 165 VVLMGFVEGYRIGG---GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAM 221
V+LMG VE YR G G GE LD LYPGG FDPLGLADDPD FAELKVKE+KNGRLAM
Sbjct: 359 VLLMGAVEAYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAM 418
Query: 222 FSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW--AYATNFVP 263
+M GF+ QAIVTG+GP+EN H+ DP A+N A T F P
Sbjct: 419 VAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAALVTQFAP 462
Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 144/218 (66%), Positives = 164/218 (75%), Gaps = 6/218 (2%)
Query: 52 PDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
PDR K+LGP+S+ TP YL GE PGDYGWD+AGL ADP T + RE E+IH RWAMLGAL
Sbjct: 1 PDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGAL 60
Query: 111 GCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
G VFPE LS+N + E VWFKAGAQIFSEGGLDYLG+ L+HAQSIL I QV+LMG
Sbjct: 61 GVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMG 120
Query: 170 FVEGYRIGGG--PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
E YR G G G+ LD LYPGG FDPLGLA+DPD AELKVKE+KNGRLAMF+MFGF
Sbjct: 121 AAEAYRTGNGLGNFGKDLDSLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGF 180
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAW--AYATNFVP 263
+VQAIVTG+ P+ENL H+A P N AY T F+P
Sbjct: 181 YVQAIVTGESPLENLSAHLASPFTVNGLNAAYMTQFMP 218
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/192 (73%), Positives = 160/192 (83%), Gaps = 2/192 (1%)
Query: 35 ITMRRTVKSAPQSIWYGPDRPKYLGPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+ + R V + WYGP+R K+LGP+S+ PSYLTGEFPGDYGWDTAGLSADPETF K
Sbjct: 17 VNVARNVGAKAADEWYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKK 76
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
RE E+IH+R+AMLGALGCV PE+L+K GV FGE+VWF+AGAQIF EGGLDYLG+P LI
Sbjct: 77 YRETELIHARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALI 136
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
HAQSI AI QVVLMG VEGYR+ GGP GEGLD LYPG +FDPLGLADDPD FAELK+K
Sbjct: 137 HAQSIGAIVISQVVLMGLVEGYRVNGGPAGEGLDSLYPGESFDPLGLADDPDTFAELKIK 196
Query: 213 ELKNGRLAMFSM 224
E+KNGRLAMFSM
Sbjct: 197 EIKNGRLAMFSM 208
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 134/156 (85%), Positives = 148/156 (94%)
Query: 110 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
LGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG
Sbjct: 1 LGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMG 60
Query: 170 FVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAM SMFGFFV
Sbjct: 61 AVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV 120
Query: 230 QAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
QAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 121 QAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 156
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/155 (86%), Positives = 147/155 (94%)
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G FPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG
Sbjct: 1 GASFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 60
Query: 171 VEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 230
VEGYR+ GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQ
Sbjct: 61 VEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 120
Query: 231 AIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
AIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 121 AIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 155
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 282 bits (722), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 125/154 (81%), Positives = 140/154 (90%)
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
ALGC+ PE+LSKNGV+FGEAVWFKAGAQIF EGGLDYLGNP+L+HAQ+I+A ACQV+LM
Sbjct: 2614 ALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILM 2673
Query: 169 GFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFF
Sbjct: 2674 GLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 2733
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
VQAIVTGKGPIENL DH+A+P NNA+A+AT F
Sbjct: 2734 VQAIVTGKGPIENLNDHLANPAVNNAFAFATKFT 2767
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/205 (72%), Positives = 159/205 (77%), Gaps = 4/205 (1%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ ++ VR VG GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DDLVRSVG-DFGGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL K
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILCK 118
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIW-ACQVVLMGFVEGYRIGGG 179
NG+KFGEAVWFKAG QIF EGGLDYLG+PNL+HAQS L I +
Sbjct: 119 NGLKFGEAVWFKAGPQIFFEGGLDYLGHPNLVHAQSFLPILGGASGAHEASSRATVLVAA 178
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPD 204
PL G D +YPGGA PLGL+ DP
Sbjct: 179 PL-LGPDIIYPGGALYPLGLSADPS 202
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/150 (88%), Positives = 142/150 (94%)
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR
Sbjct: 4 SLLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 63
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I GGPLGE DP+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTG
Sbjct: 64 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 123
Query: 236 KGPIENLYDHIADPVANNAWAYATNFVPGK 265
KGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 124 KGPLENLADHLADPVNNNAWAYATNFVPGK 153
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/182 (78%), Positives = 155/182 (85%), Gaps = 4/182 (2%)
Query: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAG 134
DYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGA 193
AQIF+EGGLDYLGNPNL+HAQSILA+ QVV+MG VEG+RI G +GEG D LYPGG
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGND-LYPGGQ 119
Query: 194 -FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVAN
Sbjct: 120 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 179
Query: 253 NA 254
NA
Sbjct: 180 NA 181
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 276 bits (706), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/179 (74%), Positives = 151/179 (84%), Gaps = 3/179 (1%)
Query: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 141
AGLSADP+TFA+ RE+EVIH+RWAMLGALGC+ PE+L+KNG+ FGEAVWFKAGAQIF +G
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDG 60
Query: 142 GLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP---LGEGLDPLYPGGAFDPLG 198
GL+YLGN +L+HAQSILA A QV+LMG E YR GG GE LD LYPGGAFDPLG
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSLYPGGAFDPLG 120
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAY 257
LADDPD AELKVKE+KNGRLAMFSMFGFFVQAIVTG+GPI NL H++DP NNAW Y
Sbjct: 121 LADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNNAWNY 179
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/185 (71%), Positives = 152/185 (82%), Gaps = 2/185 (1%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYGPDR K+LGP + Q P+YLTGE PGDYGWDTAGL ADP T A+ RE EVIH+RWAM
Sbjct: 150 SQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAM 209
Query: 107 LGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
LGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS++ + +
Sbjct: 210 LGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTL 269
Query: 166 VLMGFVEGYRIGGG-PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+MG VEGYR GGG PLG+ LD LYPGG FDPLGLA+DPD FAELKVKE+KNGRLAM +M
Sbjct: 270 AIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNGRLAMVAM 329
Query: 225 FGFFV 229
GF+V
Sbjct: 330 LGFYV 334
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 135/155 (87%), Positives = 141/155 (90%), Gaps = 3/155 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH
Sbjct: 120 AKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 154
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/144 (90%), Positives = 137/144 (95%)
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
GVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI GGPL
Sbjct: 1 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL 60
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE +DPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 61 GEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 120
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPV NNAWAYATNFVPGK
Sbjct: 121 LADHLADPVNNNAWAYATNFVPGK 144
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 171/258 (66%), Gaps = 21/258 (8%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT-----VKSAPQSIWYGPDRPK 56
AT A+ A AG+ E GRITMR+T +A S WYGPDR
Sbjct: 4 ATMALSSPALAGKIGRDVFGE----------GRITMRKTGGRARPTAASGSPWYGPDRVL 53
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG G + PE
Sbjct: 54 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPE 113
Query: 117 ILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
+K G G EAVWFK GA + L+Y GN I ILA+ A +VVL+G E YR
Sbjct: 114 ACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLILAVIA-EVVLVGGAEYYR 170
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM GFF+QA VTG
Sbjct: 171 IINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTG 228
Query: 236 KGPIENLYDHIADPVANN 253
+GP+ENL H++DP NN
Sbjct: 229 EGPVENLAKHLSDPFGNN 246
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/149 (81%), Positives = 137/149 (91%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+ T +++V ++ S WYGPDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 3 KATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 62
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+PNL+H
Sbjct: 63 NRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVH 122
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLG 182
AQSILAIWACQV+LMG +EGYR+ GGPLG
Sbjct: 123 AQSILAIWACQVILMGAIEGYRVAGGPLG 151
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 263 bits (672), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/191 (68%), Positives = 148/191 (77%), Gaps = 2/191 (1%)
Query: 6 IQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQT 65
+ S F+GQ L+ NE RKVG ++ R+ M KS+ +I YG DR YLGPFS
Sbjct: 15 LSSSVFSGQQ-LKPVNELSRKVGTSEA-RVQMMAPKKSSSGNIRYGADRLLYLGPFSGSP 72
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L+KNGVKF
Sbjct: 73 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 132
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL 185
GEAVWFKAG+QIF++GGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+ PL
Sbjct: 133 GEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAVVPLVRLR 192
Query: 186 DPLYPGGAFDP 196
P P P
Sbjct: 193 TPSTPVAPSTP 203
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/134 (91%), Positives = 129/134 (96%)
Query: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 187
AVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+GGGPLGEGLDP
Sbjct: 1 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP 60
Query: 188 LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIA 247
LYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAM SMFGFFVQAIVTGKGPIENLYDH+A
Sbjct: 61 LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIENLYDHLA 120
Query: 248 DPVANNAWAYATNF 261
DP NNAWAYATNF
Sbjct: 121 DPSTNNAWAYATNF 134
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 131/137 (95%)
Query: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKA 133
PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKA
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKA 60
Query: 134 GAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA 193
G+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE P+YPGG+
Sbjct: 61 GSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTVPIYPGGS 120
Query: 194 FDPLGLADDPDQFAELK 210
FDPLGLADDP+ FAELK
Sbjct: 121 FDPLGLADDPEAFAELK 137
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/173 (71%), Positives = 142/173 (82%), Gaps = 2/173 (1%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYGPDR K+LGP + Q P+YLTGE PGDYGWDTAGL ADP T A+ RE EVIH+RWAM
Sbjct: 150 SQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAM 209
Query: 107 LGALGCVFPEILSKNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
LGALG V PE+L+ NGV FGE AVW+KAGAQIFS GL+YLGNP+LIHAQS++ + +
Sbjct: 210 LGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTL 269
Query: 166 VLMGFVEGYRIGGG-PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNG 217
+MG VEGYR GGG PLG+ LD LYPGG FDPLGLA+DPD FAELKVKE+KNG
Sbjct: 270 AIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNG 322
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/260 (53%), Positives = 173/260 (66%), Gaps = 7/260 (2%)
Query: 5 AIQQ-SAFAGQTALRQSNEF--VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL-GP 60
A+QQ A A Q+ + +F + + V G+ + + +A WYGPDRPK+L
Sbjct: 78 ALQQVGALAHQSGAKSVEDFRTLAQGVVCQLGKENGNQALLNACNVEWYGPDRPKWLPDA 137
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
F P YLTGE+PGDYGWD GLS+DPETFA RE E++H+RWAMLGALGC+FPEIL+
Sbjct: 138 FLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGALGCIFPEILAM 197
Query: 121 N-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
N GV E VWFKAGA + ++ +DYLG+P L+HA SI+AI A QV+LMG E YR G
Sbjct: 198 NYGVGLEEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQVLLMGGAEAYRASGV 257
Query: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
P GE D ++PGG F+PL D AELKVKE+KNGRLAMFSM GF++QA TG G
Sbjct: 258 APNGEEFDKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAMFSMLGFYIQAATTGNG 317
Query: 238 PIENLYDHIADPVANNAWAY 257
P++NL DH AD N + Y
Sbjct: 318 PLQNLVDHRADAANENIFKY 337
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/187 (68%), Positives = 144/187 (77%), Gaps = 8/187 (4%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
R T A +YGPDR K+LGPFS+ TPSYLTGEFPGDYGWDTAGLSADPETFA+ RE+
Sbjct: 21 RSTSVIARAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREI 80
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 157
EVIH+RWAMLGALGC+ PE++ G E VWFKAGAQIFSEGGLDYLGNP+L+HAQSI
Sbjct: 81 EVIHARWAMLGALGCITPELI---GGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 137
Query: 158 LAIWACQVVLMGFVEGYRIGG----GPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+A A QV+LMG E +R G G GE LD LYPG AFDPL PD FAELKVKE
Sbjct: 138 IATLAVQVILMGQAEAFRAAGYVVPGGFGEDLDNLYPGDAFDPLAWL-IPDTFAELKVKE 196
Query: 214 LKNGRLA 220
+KNGRLA
Sbjct: 197 IKNGRLA 203
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/206 (61%), Positives = 153/206 (74%), Gaps = 6/206 (2%)
Query: 37 MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
MRRT + P+RP +LGP++ TPSYL G GDYGWDT+GLS PE +NRE
Sbjct: 13 MRRTTAATS-----APERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRNRE 67
Query: 97 LEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
LE++H+RWAMLGALG + PE+L+ G E VWFKAGAQIFS GGLDYLGNP+L+HAQ
Sbjct: 68 LELLHARWAMLGALGSLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQ 127
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
SILAI QV+LMG EGYR+ GGPLGE D LYPG +FDPLG ++DP+ EL+ KE+K
Sbjct: 128 SILAILGFQVLLMGLSEGYRLAGGPLGEVGDALYPGASFDPLGFSEDPESLLELQTKEIK 187
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIEN 241
NGRLAM +M G + QA+VTGKGP+ N
Sbjct: 188 NGRLAMLAMLGMYTQALVTGKGPVSN 213
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/131 (92%), Positives = 125/131 (95%), Gaps = 1/131 (0%)
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAF 194
+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRI G P G GLDPLYPGGAF
Sbjct: 1 SQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRIAGDPSG-GLDPLYPGGAF 59
Query: 195 DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
DPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPV NNA
Sbjct: 60 DPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVNNNA 119
Query: 255 WAYATNFVPGK 265
WA+ATNFVPGK
Sbjct: 120 WAFATNFVPGK 130
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/151 (77%), Positives = 132/151 (87%)
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
V PE+L+ NGV FGE VWFKAGAQIF +GGL+YLGNP+LIHAQ+I+A A QV+LMG VE
Sbjct: 1 VTPELLAANGVSFGEPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLVE 60
Query: 173 GYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GYR+ GGP GEGLDPLYPG AFDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAI
Sbjct: 61 GYRMNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAI 120
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFVP 263
VTGKGPI+NL DH+A+P NNA+A+AT F P
Sbjct: 121 VTGKGPIQNLTDHLANPAENNAFAFATKFTP 151
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/147 (78%), Positives = 130/147 (88%), Gaps = 6/147 (4%)
Query: 34 RITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
R TMR+T + P+++ WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 32 RFTMRKTA-AKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
ETF+KNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGN
Sbjct: 91 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 150
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYR 175
P+L+HAQSILAIWA QV+LMG GY+
Sbjct: 151 PSLVHAQSILAIWATQVLLMGGRRGYK 177
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 133/204 (65%), Positives = 148/204 (72%), Gaps = 12/204 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S + + F GQT N V + + TM +WYGPDR KYLGPF
Sbjct: 8 SSSVLTPTPFLGQTKGSTFNPLRDAVSLGSP-KYTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
S QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-G 179
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 179
Query: 180 PLGEGLDPLYPGGA-FDPLGLADD 202
+GEG D LYPGG FDPLGLADD
Sbjct: 180 GVGEGND-LYPGGQYFDPLGLADD 202
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/207 (63%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
+ ++ + F GQ +N V + G + TM +WYGPDR KYLGPFS
Sbjct: 14 TVLKPTPFLGQGKGANANPLRDAVSMGTG-KYTMS-------NDLWYGPDRVKYLGPFSA 65
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NG 122
QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWA+LGALGC+ PE+L K
Sbjct: 66 QTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWALLGALGCITPEVLGKWLR 125
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPL 181
V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG EG+RI G +
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLAEGFRINGLDGV 185
Query: 182 GEGLDPLYPGGA-FDPLGLADDPDQFA 207
GEG + LYP G FDPLGLADDP FA
Sbjct: 186 GEG-NNLYPXGQYFDPLGLADDPTTFA 211
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/123 (93%), Positives = 121/123 (98%)
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG 182
+KFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+GGGPLG
Sbjct: 1 IKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLG 60
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
EGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL
Sbjct: 61 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 120
Query: 243 YDH 245
YDH
Sbjct: 121 YDH 123
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/136 (83%), Positives = 124/136 (91%)
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLY 189
W A +QIFSEG LDYLGNP+LIHAQSILA+WACQVVLMG VEGYR+ GGPLGE +DPL
Sbjct: 1 WIPAVSQIFSEGELDYLGNPSLIHAQSILAVWACQVVLMGAVEGYRVAGGPLGEVIDPLC 60
Query: 190 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP ENL DH+ADP
Sbjct: 61 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFENLADHLADP 120
Query: 250 VANNAWAYATNFVPGK 265
V NNAW+YATNFVPGK
Sbjct: 121 VNNNAWSYATNFVPGK 136
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/130 (86%), Positives = 121/130 (93%)
Query: 136 QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 195
QIFSEGGLDYLG+PNL+HAQSILAIWACQV+LMG +EGYR+ GGPLGE DP+YPGG FD
Sbjct: 2 QIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFD 61
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW 255
PLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ NL DH+ADPV NNAW
Sbjct: 62 PLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLXNLADHLADPVNNNAW 121
Query: 256 AYATNFVPGK 265
AYATNFVPGK
Sbjct: 122 AYATNFVPGK 131
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/152 (78%), Positives = 126/152 (82%), Gaps = 3/152 (1%)
Query: 1 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
MAT SAIQ S+ AGQT LR Q NE V K+G A RITMRRTV+SAP+SIWYGPDRPKYL
Sbjct: 1 MATASAIQISSLAGQTLLRPQQNELVSKMG-ASQARITMRRTVRSAPESIWYGPDRPKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
+K GVKFGEAVWFKAG + G P
Sbjct: 120 AKTGVKFGEAVWFKAGRRYSRREASTTWGTPT 151
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/147 (79%), Positives = 124/147 (84%), Gaps = 7/147 (4%)
Query: 1 MATSAIQQS-AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLG 59
MATSA+QQ+ +F GQ + R GV G RITMRRTVKSAPQSIWY PDRPKYL
Sbjct: 1 MATSALQQTTSFLGQALVS------RPAGVDAGSRITMRRTVKSAPQSIWYDPDRPKYLA 54
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFSEQT SYLTGEFPGDYGWDTAGLSAD ETFA+NRELEVIHS WAMLGALGCVFPE+L+
Sbjct: 55 PFSEQTSSYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWWAMLGALGCVFPEVLA 114
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYL 146
KN VKFGE VWFKAGAQIFSEGGLDYL
Sbjct: 115 KNDVKFGEVVWFKAGAQIFSEGGLDYL 141
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/129 (85%), Positives = 121/129 (93%)
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAF 194
+QIFSEG LDYLGNP+L+HAQSILA WACQVVLMG VEGYR+ GGPLGE +DPLYPGG+F
Sbjct: 1 SQIFSEGELDYLGNPSLVHAQSILASWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSF 60
Query: 195 DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
DPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNA
Sbjct: 61 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 120
Query: 255 WAYATNFVP 263
W+YATNFVP
Sbjct: 121 WSYATNFVP 129
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 124/157 (78%), Positives = 132/157 (84%), Gaps = 4/157 (2%)
Query: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAG 134
DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAG
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGA 193
AQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI G +GEG D LYPGG
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGND-LYPGGQ 119
Query: 194 -FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFV
Sbjct: 120 YFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 122/162 (75%), Positives = 135/162 (83%), Gaps = 4/162 (2%)
Query: 106 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA GC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ Q
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 60
Query: 165 VVLMGFVEGYRIGG-GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMF 222
V+LMG VEG+RI G +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMF
Sbjct: 61 VILMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 119
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
SMFGFFVQAIVTGKGP+ENL DH+ +PVANNAWA+AT F PG
Sbjct: 120 SMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAFATKFAPG 161
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/125 (88%), Positives = 118/125 (94%)
Query: 141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLA 200
GGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPLGE DPLYPGG+FDPLGLA
Sbjct: 5 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 64
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
DDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATN
Sbjct: 65 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 124
Query: 261 FVPGK 265
FVPGK
Sbjct: 125 FVPGK 129
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/120 (91%), Positives = 114/120 (95%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA+S IQ+SAFAGQTAL+QSNE VRKVG GGR+TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MASSTIQRSAFAGQTALKQSNELVRKVGSFAGGRVTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK
Sbjct: 61 FSEQTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 113/126 (89%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
SAIQQSAF G+T LRQ NEF+RKVG R TMRRTVKSAP+SIWYGPDRPKYLGPFSE
Sbjct: 1 SAIQQSAFTGKTDLRQGNEFIRKVGNLGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSE 60
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
Q PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGV
Sbjct: 61 QIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGV 120
Query: 124 KFGEAV 129
KFGEA
Sbjct: 121 KFGEAT 126
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/125 (88%), Positives = 117/125 (93%)
Query: 141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLA 200
GGLDYLGNP+LIHAQSILAIWACQV+LMG VEGYRI GGPLGE DPLYPGG+FDPLGLA
Sbjct: 1 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 60
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
DDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL D +ADPV NNAWAYATN
Sbjct: 61 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADGLADPVNNNAWAYATN 120
Query: 261 FVPGK 265
FVPGK
Sbjct: 121 FVPGK 125
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 118/125 (94%)
Query: 141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLA 200
G LDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE +DPLYPGG+FDPLGLA
Sbjct: 1 GELDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLA 60
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATN
Sbjct: 61 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATN 120
Query: 261 FVPGK 265
FVPGK
Sbjct: 121 FVPGK 125
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 115/125 (92%), Gaps = 1/125 (0%)
Query: 33 GRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 91
GRI+MR+T K S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 31 GRISMRKTAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETF 90
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 91 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
Query: 152 IHAQS 156
+HAQS
Sbjct: 151 VHAQS 155
>gi|357496383|ref|XP_003618480.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355493495|gb|AES74698.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 180
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/130 (83%), Positives = 118/130 (90%)
Query: 136 QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD 195
QIFS+GGLDYLGNP+L+HAQSILAIW +LMG VEGYRI GPLGE +DPLYPGG+FD
Sbjct: 51 QIFSDGGLDYLGNPSLVHAQSILAIWVVLAILMGAVEGYRIADGPLGEVVDPLYPGGSFD 110
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW 255
PLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVT KGP+ENL DHIADPV +NAW
Sbjct: 111 PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLENLADHIADPVNSNAW 170
Query: 256 AYATNFVPGK 265
A+ATNFVPGK
Sbjct: 171 AFATNFVPGK 180
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 41/45 (91%)
Query: 221 MFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
MFSMFGFFVQAIVTGKGP+ENL DHI DPV NNAWA+ATNFVPG
Sbjct: 1 MFSMFGFFVQAIVTGKGPLENLADHITDPVNNNAWAFATNFVPGN 45
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/122 (87%), Positives = 114/122 (93%)
Query: 144 DYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDP 203
DYLGNP+LIHAQSILAIWA QV+LMG VEGYRI GGPLGE DP+YPGG+FDPLGLADDP
Sbjct: 4 DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDP 63
Query: 204 DQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVP
Sbjct: 64 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 123
Query: 264 GK 265
GK
Sbjct: 124 GK 125
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/120 (85%), Positives = 113/120 (94%), Gaps = 1/120 (0%)
Query: 147 GNP-NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQ 205
G+P +L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+
Sbjct: 48 GSPWSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 107
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 108 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 167
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/120 (85%), Positives = 113/120 (94%), Gaps = 1/120 (0%)
Query: 147 GNP-NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQ 205
G+P +L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+
Sbjct: 48 GSPWSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 107
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 108 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 167
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 211
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 155/266 (58%), Gaps = 19/266 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S+ Q R K + +++ S+W+G DRPK+LGP
Sbjct: 55 AVKAIANSSLGKQLQERMQET---KAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPI 111
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
P +L G FPGDYG+D AGL DP F K E++H+RWAML ALG V PE+L K
Sbjct: 112 PYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKF 171
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGG 178
GVKF E+VW++ G LDYLG P +++ AQ IL I CQ +LM E R G
Sbjct: 172 FGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYCG 231
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPLGL+ DP F ELKVKE+KNGRLAM + GF+
Sbjct: 232 ---IEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFY 288
Query: 229 VQAIVTGKGPIENLYDHIADPVANNA 254
VQA+VT KGP+ENL DH+ DP+ NNA
Sbjct: 289 VQALVTKKGPLENLLDHLQDPLHNNA 314
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 128/159 (80%), Gaps = 10/159 (6%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRT----VKSAPQSIWYGPDRPKY 57
+T A+ +FAG+ A++ S VG GRI+MR+T V+S S WYGPDR Y
Sbjct: 1 STMALSSPSFAGK-AIKLSPSTPDLVGR---GRISMRKTGGKPVRSG--SPWYGPDRVLY 54
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
LGP S PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPE+
Sbjct: 55 LGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPEL 114
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQS
Sbjct: 115 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 153
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 50 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 109
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 110 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 165
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/153 (71%), Positives = 126/153 (82%), Gaps = 7/153 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK---SAPQSIWYGPDRPKYL 58
+T A+ +FAG+ A++ + G GRI+MR+T K ++ S WYGPDR KYL
Sbjct: 4 STMALSSPSFAGK-AVKVAPSSSELFG---NGRISMRKTGKKPVASSGSPWYGPDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 120 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 152
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/178 (64%), Positives = 121/178 (67%), Gaps = 51/178 (28%)
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
P TFAKNRELEVIH RWAMLGALGCVFPE+LS+NGVKFGEAVWFKAGAQIFSE
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSE------- 74
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
V+LMG VEGYRI GGPLGE
Sbjct: 75 -----------------VILMGAVEGYRIAGGPLGE------------------------ 93
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 94 ---VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 148
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 50 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 109
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 110 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 165
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 154/266 (57%), Gaps = 19/266 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S+ Q R K + +++ S+W+G DRPK+LGP
Sbjct: 55 AVKAIANSSLGKQLQERMQET---KAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPI 111
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
P +L G FPGDYG+D AGL DP F K E++H+RWAML ALG V PE+L K
Sbjct: 112 PYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKF 171
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGG 178
GV F E+VW++ G LDYLG P +++ AQ I+ I CQ +LM E R G
Sbjct: 172 FGVNFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYCG 231
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPLGL+ DP F ELKVKE+KNGRLAM + GF+
Sbjct: 232 ---IEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFY 288
Query: 229 VQAIVTGKGPIENLYDHIADPVANNA 254
VQA+VT KGP+ENL DH+ DP+ NNA
Sbjct: 289 VQALVTKKGPLENLLDHLQDPLHNNA 314
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 116
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL + P YLTGE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVWFK GA + L+Y GN I ++A+ A +
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLVVAVIA-E 181
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 182 VVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSM 239
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
F FF+QA VTG+GP+ENL H++DP NN
Sbjct: 240 FAFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+LIHAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAW+YATNFVPGK
Sbjct: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNFVPGK 116
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL + P YLTGE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVWFK GA + L+Y GN I ++A+ A +
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLVVAVIA-E 181
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 182 VILVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSM 239
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
F FF+QA VTG+GP+ENL H++DP NN
Sbjct: 240 FAFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 110/116 (94%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAIWACQVVLMG VEGYRI GGPLGE +DPLYPGG+FDPLGLA+DP+ FAEL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 116
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 138/204 (67%), Gaps = 5/204 (2%)
Query: 46 QSIWYGPDRPKYLGPFS--EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
++ +YGP+RP + GPF+ + P YL GE+PGDYG D L PE +AK R E+++ R
Sbjct: 10 RTAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGR 69
Query: 104 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
WAMLG GC+ PE+++ N E VWFK GAQIFSE G+DYLG P I+A S++A+
Sbjct: 70 WAMLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVAVIVV 129
Query: 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMF 222
Q +LMG E RI P EG D YPGG AFDPLG + DP+ FAELKVKE+KNGRLAM
Sbjct: 130 QALLMGVAEYARIKLSP--EGNDAFYPGGKAFDPLGFSSDPESFAELKVKEIKNGRLAMM 187
Query: 223 SMFGFFVQAIVTGKGPIENLYDHI 246
+M G F Q VTG P++NL+D +
Sbjct: 188 AMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 69 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 128
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y G P I ILA+ A +
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLILAVVA-E 185
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+VL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 186 IVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 243
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 244 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 272
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL + P YLTGE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVWFK GA + L Y GN I ++A+ A +
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNS--IPINLVVAVIA-E 181
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 182 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSM 239
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
F FF+QA VTG+GP+ENL H++DP NN
Sbjct: 240 FAFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 161/268 (60%), Gaps = 19/268 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S G++ R+ E +K+ V + K+ +S WYG +RP++LGP
Sbjct: 72 AVKAIANSPL-GESLQRRLEE-RKKLAVQQSSKFKALAQ-KARKESFWYGEERPRWLGPI 128
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S Q P+YL+GE PGDYG+D AGL+ DP F + E++H+RWAML ALG + PE+L +
Sbjct: 129 SYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLS 188
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGG 178
G F E VW++ G LDYLG P L A Q +L I CQ +LM E R G
Sbjct: 189 GAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVGPEYARYCG 248
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPL L+ DP F ELKVKE+KNGRLAM + GF+
Sbjct: 249 ---IEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFY 305
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWA 256
+QA +TGKGP+ENL +HI+DP+ NN ++
Sbjct: 306 IQAALTGKGPVENLVEHISDPLHNNLFS 333
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 109/116 (93%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+LIHAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP FAEL
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPXAFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAW+YATNFVPGK
Sbjct: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNFVPGK 116
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 69 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 128
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y G P I ILA+ A +
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINFILAVVA-E 185
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+VL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 186 IVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 243
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 244 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 272
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 70 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 129
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y G P I I+A+ A +
Sbjct: 130 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVVA-E 186
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+VL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 187 IVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 244
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 245 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 273
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 109/116 (93%)
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+LIHAQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAEL
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 60
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
KVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAW+YATNFVPG
Sbjct: 61 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYATNFVPGN 116
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 141/211 (66%), Gaps = 10/211 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL ++ P YLTGE PGDYG+D GLS PE F + + E+IH+RWA
Sbjct: 6 WYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 65
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLG-NPNLIHAQSILAIWAC 163
MLGA G V PE +K G G EAVW+K GA + + Y G L A +++A
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIA---- 121
Query: 164 QVVLMGFVEGYR-IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMF 222
+V+L+G E YR PLG LD L+PGGAFDPLGLA DPDQFA LKVKE+KNGRLAMF
Sbjct: 122 EVILVGGAEYYRSTNKSPLGSDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMF 181
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
SM GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 182 SMLGFFVQAYVTGEGPVENLSAHLSDPFGNN 212
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 142/209 (67%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D +GLS PE F+K + E+IH+RWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y G P I I+A+ A +
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA-E 187
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+VL+G E YRI G E D L+PGG FDPLGLA+DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 188 IVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAM 245
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 246 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 141/209 (67%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y G P I I+A+ A +
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA-E 189
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+VL+G E YRI G E D L+PGG FDPLGLA+DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 190 IVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAM 247
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 248 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 276
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL + P YLTGE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 64 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 123
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVWFK GA + L+Y GN I ++A+ A +
Sbjct: 124 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNS--IPINLVVAVIA-E 180
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 181 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSM 238
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
FF+QA VTG+GP+ENL H++DP NN
Sbjct: 239 LAFFIQAYVTGEGPVENLAKHLSDPFGNN 267
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 159/274 (58%), Gaps = 20/274 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S G++ R+ E RK + K+ +S WYG DRP++LGP
Sbjct: 61 AVKAIANSPL-GESLQRKMEE--RKTFAVENSSTFKALAGKARKESFWYGEDRPRWLGPI 117
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S + PSYLTGE PGDYG+D AGL DP K E++H+RWAML ++G + PEIL
Sbjct: 118 SYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLL 177
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGG 178
G F E VW++ G LDYLG L A Q ++ I CQ +LM E R G
Sbjct: 178 GAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCG 237
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGGA FDPL L++DP+ F ELKVKE+KNGRLAM + GF+
Sbjct: 238 ---IEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFY 294
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
VQA +TGKGP++NL DHI+DP NN + NF+
Sbjct: 295 VQAALTGKGPVQNLIDHISDPFHNNLLG-SLNFI 327
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 141/209 (67%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D GLS PE F+K + E+IH+RWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y G P I I+A+ A +
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA-E 187
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
+VL+G E YRI G E D L+PGG FDPLGLA+DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 188 IVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAM 245
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 246 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/118 (83%), Positives = 107/118 (90%), Gaps = 2/118 (1%)
Query: 34 RITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF 91
R+TMR++ + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETF
Sbjct: 32 RVTMRKSATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 91
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
AKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 92 AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YLTGE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 74 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 133
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L+Y GN I ++A+ A +
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNS--IPINLVVAVIA-E 190
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 191 VVLLGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAM 248
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 249 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 277
>gi|302143545|emb|CBI22106.3| unnamed protein product [Vitis vinifera]
Length = 147
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 132/233 (56%), Gaps = 90/233 (38%)
Query: 37 MRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
MR++V + S WYGPDR KYLGPFS ADPETFA
Sbjct: 1 MRKSVAKSKAVSSGSPWYGPDRVKYLGPFS-----------------------ADPETFA 37
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
KNRELEVIH RWAMLGALGCVFPE+LS+NGVKFGEAV
Sbjct: 38 KNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAV----------------------- 74
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVK 212
+LMG VEGYRI GGPLGE VK
Sbjct: 75 -------------ILMGAVEGYRIAGGPLGE---------------------------VK 94
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
E+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 95 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 147
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 137/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G P YL GE PGDYG+D GLS PE F K + E+IH+RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L Y G IH I A+ A +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGAS--IHINLIAAVVA-E 201
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YR G E D L+PGG FDPLGLA DPDQFA LKVKE+KNGRLAMFSM
Sbjct: 202 VILVGGAEYYRATNGLDFE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 116/132 (87%), Gaps = 3/132 (2%)
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA 193
AQIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI G P +GEG D LYPGG
Sbjct: 1 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLPGVGEGGD-LYPGGQ 59
Query: 194 -FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 252
FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVAN
Sbjct: 60 YFDPLGLADDPDTFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 119
Query: 253 NAWAYATNFVPG 264
NAW YAT FVPG
Sbjct: 120 NAWEYATKFVPG 131
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 140/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P+YLTGE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y G I I A+ A +
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLIFAVVA-E 188
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA+DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 189 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAM 246
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 247 LGFFIQAYVTGEGPVENLAAHLSDPFGNN 275
>gi|115776|sp|P14584.1|CB21_RAPSA RecName: Full=Chlorophyll a-b binding of LHCII type 1 protein;
AltName: Full=Chlorophyll a-b binding of LHCII type I
protein; Short=CAB; Short=LHCP
gi|21100|emb|CAA34640.1| chlorophyll a/b binding protein (124 AA) [Raphanus sativus]
Length = 124
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/124 (80%), Positives = 110/124 (88%), Gaps = 1/124 (0%)
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG-GPLGEGLDPLYPGGAFDPLGLAD 201
LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ G GPLGE D LYPGG+FDPL
Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLT 60
Query: 202 DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNF
Sbjct: 61 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNF 120
Query: 262 VPGK 265
VPGK
Sbjct: 121 VPGK 124
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 136/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G P YL GE PGDYG+D GLS PE F K + E+IH+RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L Y G I+ ++A +
Sbjct: 145 MLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 201
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YR G E D L+PGG FDPLGLA DPDQFA LKVKE+KNGRLAMFSM
Sbjct: 202 VILVGGAEYYRATNGLDFE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 136/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G P YL GE PGDYG+D GLS PE F K + E+IH+RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L Y G I+ ++A +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 201
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YR G E D L+PGG FDPLGLA DPDQFA LKVKE+KNGRLAMFSM
Sbjct: 202 VILVGGAEYYRATNGLDFE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YL GE PGDYG+D GLS PE F K + E+IH+RWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y GN I I+A+ A +
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVIA-E 186
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLADDPDQ A LKVKE+KNGRLAMF+M
Sbjct: 187 VVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 244
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 245 LGFYFQAYVTGEGPVENLAKHLSDPFGNN 273
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 141/220 (64%), Gaps = 11/220 (5%)
Query: 40 TVKSAPQSI--WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
TV +A + WYGPDR +L G + P YL GE GDYG+D GL PE FAK
Sbjct: 54 TVSAANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKY 113
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE L+K G G EAVWFK GA + L Y G I
Sbjct: 114 QAFELIHARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKN--IP 171
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+LA+ +VVL+G E YRI G E D L+PGG FDPL LA DP+Q A LKVKE
Sbjct: 172 INLVLAV-VGEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLDLAKDPEQGALLKVKE 228
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 229 IKNGRLAMFSMFAFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/211 (54%), Positives = 139/211 (65%), Gaps = 9/211 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL ++ P+YLTGE PGDYG+D GLS PE F + + E+IH+RWA
Sbjct: 48 WYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 107
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVW+K GA + + Y G I+ + A +
Sbjct: 108 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPIN---LAAAVIAE 164
Query: 165 VVLMGFVEGYRIGGGPLG--EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMF 222
V+L+G E YR + + LD L+PGGAFDPLGLA DPDQFA LKVKE+KNGRLAMF
Sbjct: 165 VILVGGAEYYRSTNKDVYGLQDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMF 224
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
SM GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 225 SMLGFFVQAYVTGEGPVENLAAHLSDPFGNN 255
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + + P YL GE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 69 WYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 128
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L Y G I +LA+ A +
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKN--IPINLVLAVIA-E 185
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 186 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSM 243
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 244 LGFFIQAYVTGQGPVENLAAHLSDPFGNN 272
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/101 (95%), Positives = 99/101 (98%)
Query: 75 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134
GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 66
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
+QIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR
Sbjct: 67 SQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYR 107
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 136/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G P YL GE PGDYG+D GLS PE F K + E+IH+RWA
Sbjct: 60 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 119
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L Y G I+ ++A +
Sbjct: 120 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 176
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YR G E D L+PGG FDPLGLA DPDQFA LKVKE+KNGRLAMFSM
Sbjct: 177 VILVGGAEYYRATNGLDFE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 234
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 235 LGFFVQAYVTGEGPVENLAAHLSDPFGNN 263
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/226 (51%), Positives = 141/226 (62%), Gaps = 16/226 (7%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
+S+WY RPK+LGP P +L GE PGDYG+D GLS DP F + E++H+RWA
Sbjct: 123 ESMWYREGRPKWLGPIPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWA 182
Query: 106 MLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL--IHAQSILAIWA 162
ML ALG V PE+L + GV+F E VW+K G LDYLG P L AQ IL I
Sbjct: 183 MLAALGVVIPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAF 242
Query: 163 CQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVK 212
CQV+LM E R G E L+PL YPGGA FDPLGL D F +LKVK
Sbjct: 243 CQVILMLGPEYARYCG---IEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVK 299
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
E+KNGRLAM + GF+VQA+VT KGPI+NL+D + DP+ N +AYA
Sbjct: 300 EMKNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLHQNLFAYA 345
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 138/221 (62%), Gaps = 16/221 (7%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S WYG DRP++LGP P YLTGE+PGDYG+D AGL DP FA E++H RWA
Sbjct: 92 NSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 151
Query: 106 MLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWA 162
ML ALG V PE+L G V F E VW+K G LDYLG P A Q ++ I
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 211
Query: 163 CQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVK 212
CQ +LM E R G E L+PL YPGG FDPLGL+ DP F +LKVK
Sbjct: 212 CQALLMVGPEYARYCG---IEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVK 268
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
E+KNGRLAM + FGF++QA VTGKGP++NL +H++DP+ NN
Sbjct: 269 EIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNN 309
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 154/268 (57%), Gaps = 19/268 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S+ +LR+ E +K V + R + ++ S WYG +RP++ GP
Sbjct: 65 AVKAIANSSLG--ESLRRRLEEKKKEAVENSSRFKAKAQ-EARNDSKWYGKERPRWFGPI 121
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P YLTGE PGDYG+D AGL D TF K E++H+RWAML ALG + PE+L
Sbjct: 122 PYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLT 181
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGG 178
G F E VW++ G LDYLG P L A Q ++ I CQV+LM E R G
Sbjct: 182 GAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 241
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPL L++DP F +LKVKE+KNGRLAM + GF+
Sbjct: 242 ---IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFY 298
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWA 256
QA TGKGP++NL DH++DP+ NN A
Sbjct: 299 AQAAFTGKGPVQNLVDHVSDPLHNNLLA 326
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G P YL GE PGDYG+D GL PE F K + E+IH+RWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWA 144
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L Y G I+ ++A +
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 201
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YR G E D L+PGG FDPLGLA DPDQFA LKVKE+KNGRLAMFSM
Sbjct: 202 VILVGGAEYYRATNGLDFE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFFVQA VTG+GP+ENL H++DP NN
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNN 288
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/199 (51%), Positives = 132/199 (66%), Gaps = 5/199 (2%)
Query: 49 WYGPDRPKYLGPFSE--QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
+YGP+RP + GPF++ P YL GE+PGDYG D L+ P +A+ R E+++ RWAM
Sbjct: 25 YYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAM 84
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
LG GC+ PE+++ N E VWF GAQIFS+ G+DYLG P I+A S+ A+ Q +
Sbjct: 85 LGITGCLTPELINSNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQAL 144
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
LMG E RI P EG DP YPGG FDPLG + DP+ AELKVKE+KNGRLAM +M
Sbjct: 145 LMGLAEYARIKFVP--EGADPFYPGGKTFDPLGFSSDPEILAELKVKEIKNGRLAMMAMA 202
Query: 226 GFFVQAIVTGKGPIENLYD 244
G F Q VTG P++NL+D
Sbjct: 203 GLFAQGAVTGVSPLQNLHD 221
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 144/228 (63%), Gaps = 18/228 (7%)
Query: 39 RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 98
R ++A S WYG +RP++LGP + P++LTGE+PGDYG+D AGL DP FA E
Sbjct: 93 RQARTA--SSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFE 150
Query: 99 VIHSRWAMLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--Q 155
++H RWAML ALG V PE+L G V F E VW+K G LDYLG P A Q
Sbjct: 151 ILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQ 210
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQ 205
++ I CQ +LM E R G E L+PL YPGGA FDPLGL+ DP
Sbjct: 211 GVIVIAICQALLMVGPEYARYCG---IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 267
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
F +LKVKE+KNGRLAM + GF++QA VTGKGPI+NL +H++DP+ NN
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 152/265 (57%), Gaps = 19/265 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S G +L++ E + VA+ + ++ S WYG +RP++LGP
Sbjct: 69 AVKAIANSPLGG--SLQRQLEKKKNSAVANSSKFKALAE-EARKDSSWYGEERPRWLGPL 125
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P YLTGE PGDYG+D AGLS DP F K E++H+RWAML +LG + PEIL
Sbjct: 126 PYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIF 185
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGG 178
G F E +W++ G LDYLG P +L +Q ++ I CQ +LM E R G
Sbjct: 186 GAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCG 245
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPL L+ D F ELKVKE+KNGRLAM + GF+
Sbjct: 246 ---IEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFY 302
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
QA +TGKGP++NL DHIADP NN
Sbjct: 303 SQAALTGKGPVQNLLDHIADPFHNN 327
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 138/221 (62%), Gaps = 16/221 (7%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
S WYG DRP++LGP P +LTGE+PGDYG+D AGL DP FA E++H RWA
Sbjct: 91 NSFWYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWA 150
Query: 106 MLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWA 162
ML ALG V PE+L G V F E VW+K G LDYLG P A Q ++ I
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAI 210
Query: 163 CQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVK 212
CQ +LM E R G E L+PL YPGGA FDPLGL+ DP F +LKVK
Sbjct: 211 CQALLMVGPEYARYCG---IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVK 267
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
E+KNGRLAM + GF++QA VTGKGP++NL +H++DP+ NN
Sbjct: 268 EIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNN 308
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 153/265 (57%), Gaps = 19/265 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S G +L++ E + VA+ + ++ S WYG +RP++LGP
Sbjct: 69 AVKAIANSPLGG--SLQRQLEKKKNSAVANSSKFKALAE-EARKDSSWYGEERPRWLGPL 125
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P YLTGE PGDYG+D AGLS DP F K E++H+RWAML +LG + PEIL
Sbjct: 126 PYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIF 185
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGG 178
G F E +W++ G LDYLG P +L +Q ++ I CQ +LM E R G
Sbjct: 186 GAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCG 245
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPL L+ D + F ELKVKE+KNGRLAM + GF+
Sbjct: 246 ---IEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFY 302
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
QA +TGKGP++NL +HIADP NN
Sbjct: 303 SQAALTGKGPVQNLLNHIADPFHNN 327
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/120 (83%), Positives = 108/120 (90%), Gaps = 2/120 (1%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGP 58
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS+
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSR 118
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F K + E+IH+RWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y G I +LA+ A +
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-E 188
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E +RI G LG D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 189 VILVGGAEYFRITNG-LGFD-DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 246
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF QA VTG+GP+ENL H++DP NN
Sbjct: 247 LGFFFQAYVTGEGPVENLAKHLSDPFGNN 275
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 152/265 (57%), Gaps = 19/265 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S+ +LR+ E +K V + R + ++ S WYG +RP++ GP
Sbjct: 62 AVKAIANSSIG--VSLRRRLEEKKKEAVENSSRFK-SKAQEARNDSKWYGKERPRWFGPI 118
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P YLTGE PGDYG+D AGL D TF K E++H+RWAML ALG + PE+
Sbjct: 119 PYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLT 178
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGG 178
G F E VW++ G L+YLG P L A Q ++ I CQV+LM E R G
Sbjct: 179 GTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 238
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGG FDPL L++DP F +LKVKE+KNGRLAM + GF+
Sbjct: 239 ---IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFY 295
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
QA TGKGP++NL DH++DP+ NN
Sbjct: 296 AQAAFTGKGPVQNLVDHVSDPLHNN 320
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 143/228 (62%), Gaps = 18/228 (7%)
Query: 39 RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 98
R ++A S WYG +RP++LGP + P++LTGE+PGDYG+D AGL DP FA E
Sbjct: 93 RQARTA--SSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFE 150
Query: 99 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--Q 155
++H RWAML ALG V PE+L V F E VW+K G LDYLG P A Q
Sbjct: 151 ILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQ 210
Query: 156 SILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQ 205
++ I CQ +LM E R G E L+PL YPGGA FDPLGL+ DP
Sbjct: 211 GVIVIAICQALLMVGPEYARYCG---IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVA 267
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
F +LKVKE+KNGRLAM + GF++QA VTGKGPI+NL +H++DP+ NN
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P+YL GE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 61 WYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 120
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y G I ++A+ A +
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVVAVIA-E 177
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LK KE+KNGRLAMF+M
Sbjct: 178 VVLLGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAM 235
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 236 LGFFLQAYVTGEGPVENLSKHLSDPFGNN 264
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/118 (77%), Positives = 107/118 (90%), Gaps = 1/118 (0%)
Query: 49 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
WYGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 108 GALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
GALGCV P++LSKNGV+F EA+WFKAGAQIF EGGLDYLGN +L+HAQ+I+A ACQV
Sbjct: 97 GALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQV 154
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 137/224 (61%), Gaps = 19/224 (8%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + + P YL GE GDYG+D GL DPET AK RE E++H+RWA
Sbjct: 52 WYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 111
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI--LAIWAC 163
ML A G + PE L NG WF+ GA++ + G L+Y P I + + A+ A
Sbjct: 112 MLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAV 171
Query: 164 QVVLMGFVEGYRIGG-GPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAEL 209
+V LMG VE YR G GP G +GLDPLYPGG FDPLGLADDP+ EL
Sbjct: 172 EVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQEL 231
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KVKE+KNGRLAM S+ GF VQ+ VTG+GP N H+ADP N
Sbjct: 232 KVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYN 275
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 140/210 (66%), Gaps = 11/210 (5%)
Query: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
WYGPDR P+ L SE P YL GE PGDYG+D GLS PE F+K + E+IH+RW
Sbjct: 65 WYGPDRRIFLPEGLLDRSE-VPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARW 123
Query: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
AMLGA G + PE +K G G EAVWFK GA + L+Y GN I+ ++ A
Sbjct: 124 AMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAA 180
Query: 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFS
Sbjct: 181 EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANN 253
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 135/218 (61%), Gaps = 16/218 (7%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
WYG RP++LGP P +L GEFPGDYG+D AGL DP FA E++H RWAML
Sbjct: 90 WYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 149
Query: 109 ALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQV 165
ALG V PE+L G V F E VW+K G LDYLG P A Q I+ I CQV
Sbjct: 150 ALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQV 209
Query: 166 VLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELK 215
+LM E R G E L+PL YPGGA FDPLGL+ DP F E KVKE+K
Sbjct: 210 LLMVGPEYARYCG---IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIK 266
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + GF++QA VTGKGP++NL +H++DP+ NN
Sbjct: 267 NGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNN 304
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 137/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL G + P YL GE PGDYG+D GL PE FAK + E+IH+RWA
Sbjct: 68 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 127
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE L+K G G EAVWFK GA + L+Y GN I+ ++ +
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LILAVVAE 184
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 185 VVLVGGAEYYRITNGL--EFDDKLHPGGPFDPLGLATDPDQAALLKVKEIKNGRLAMFSM 242
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP ENL H++DP NN
Sbjct: 243 LGFFIQAYVTGEGPFENLCAHLSDPFGNN 271
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 140/210 (66%), Gaps = 11/210 (5%)
Query: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
WYGPDR P+ L SE P YL GE PGDYG+D GLS PE F+K + E+IH+RW
Sbjct: 65 WYGPDRRIFLPEGLLDRSE-VPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARW 123
Query: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
AMLGA G + PE +K G G EAVWFK GA + L+Y GN I+ ++ A
Sbjct: 124 AMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAA 180
Query: 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFS
Sbjct: 181 EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANN 253
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 135/209 (64%), Gaps = 10/209 (4%)
Query: 49 WYGPDRPKYL--GPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYG R YL G P YLTGE PGDYG+D GLS P F K + E+IH+RWA
Sbjct: 58 WYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWA 117
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G + G EAVWFK GA + G L+Y G I +LA+ A +
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGAN--IPINLVLAVLA-E 174
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E YR GLD L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 175 VILVGGAEYYRSINN---LGLDRLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAM 231
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA TG+GP+ENL H++DP NN
Sbjct: 232 LGFFIQAYATGEGPVENLTTHLSDPFGNN 260
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/135 (77%), Positives = 111/135 (82%), Gaps = 3/135 (2%)
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 1 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 60
Query: 120 K-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+ QVVLMG V G+RI G
Sbjct: 61 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVVGFRING 120
Query: 179 -GPLGEGLDPLYPGG 192
+GEG + LYPGG
Sbjct: 121 LDGVGEG-NNLYPGG 134
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 137/224 (61%), Gaps = 19/224 (8%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + + P YL GE GDYG+D GL DPET AK RE E++H+RWA
Sbjct: 22 WYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 81
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI--LAIWAC 163
ML A G + PE L NG WF+ GA++ + G L+Y P I + + A+ A
Sbjct: 82 MLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAV 141
Query: 164 QVVLMGFVEGYRIGG-GPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAEL 209
+V LMG VE YR G GP G +GLDPLYPGG FDPLGLADDP+ EL
Sbjct: 142 EVGLMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQEL 201
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KVKE+KNGRLAM S+ GF VQ+ VTG+GP N H+ADP N
Sbjct: 202 KVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYN 245
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/210 (55%), Positives = 139/210 (66%), Gaps = 11/210 (5%)
Query: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
WYGPDR P+ L SE P YL GE PGDYG+D GLS +P+ FA+ + E+IH+RW
Sbjct: 65 WYGPDRRIFLPEGLLDRSE-VPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARW 123
Query: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163
AMLGA G + PE +K G G EAVWFK GA + L+Y GN I+ +
Sbjct: 124 AMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVAVVA--- 180
Query: 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
+VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFS
Sbjct: 181 EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANN 253
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 239 MLGFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|77799163|gb|ABB03724.1| putative chloroplast chlorophyll A-B binding protein type II
[Sorghum bicolor]
Length = 113
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/102 (92%), Positives = 98/102 (96%)
Query: 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
QVVLMGFVEGYR+GGGPLGEGLD +YPGGAFDPLGLADDPD AELKVKELKNGRLAMFS
Sbjct: 12 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFS 71
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
MFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPG
Sbjct: 72 MFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGN 113
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 137/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YL GE PGDYG+D GLS P+ F K + E+IH+RWA
Sbjct: 68 WYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWA 127
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y GN I+ ++ +
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LILAVVAE 184
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 185 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 242
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 243 LGFFIQAYVTGEGPVENLSAHLSDPFGNN 271
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YL GE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 67 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 126
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVWFK GA + L+Y G I+ + +
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVV---AE 183
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 184 VVLLGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAM 241
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTGKGP+ENL H++DP NN
Sbjct: 242 LGFFIQAYVTGKGPVENLAAHLSDPFGNN 270
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 137/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YL GE PGDYG+D GLS +P+ FA+ + E+IH+RWA
Sbjct: 65 WYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWA 124
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y GN I+ + +
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVAVVA---E 181
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G EG L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF M
Sbjct: 182 VVLVGGAEYYRIINGLDLEG--KLHPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMFPM 239
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 240 LGFFIQAYVTGEGPVENLAKHLSDPFGNN 268
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 136/224 (60%), Gaps = 19/224 (8%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + + P+YL GE GDYG+D GL D ET AK RE E++H+RWA
Sbjct: 49 WYGPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWA 108
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI--LAIWAC 163
ML A G + PE L NG VWF+ GA++ + G L+Y P I + + A+ A
Sbjct: 109 MLAAAGILIPEGLQANGANIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAI 168
Query: 164 QVVLMGFVEGYRIGG-GPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAEL 209
+V LMG VE YR G GP G EGLD +YPGG FDPLGLADDP+ F EL
Sbjct: 169 EVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQEL 228
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KVKE+KNGRLAM S+ F +Q+ VTG+GP N H+ DP N
Sbjct: 229 KVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYN 272
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 135/218 (61%), Gaps = 16/218 (7%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
W+G RP++LGP P +L GEFPGDYG+D AGL DP FA E++H RWAML
Sbjct: 98 WFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 157
Query: 109 ALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQV 165
ALG V PE+L G V F E VW+K G LDYLG L A Q ++ I CQ
Sbjct: 158 ALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQA 217
Query: 166 VLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELK 215
+LM E R G E L+PL YPGGA FDPLGL+ DP F ELKVKE+K
Sbjct: 218 LLMVGPEYARYCG---IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIK 274
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + GF++QA VTGKGP++NL +H++DP+ NN
Sbjct: 275 NGRLAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNN 312
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 136/209 (65%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YL GE PG+YG+D GLS PE FAK + E+IH+RWA
Sbjct: 68 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWA 127
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y G I+ ++ +
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LILAVVAE 184
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 185 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSM 242
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 243 LGFFIQAYVTGQGPVENLAAHLSDPFGNN 271
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/136 (72%), Positives = 111/136 (81%), Gaps = 6/136 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLG 59
+T A+ +FAGQ A++ S G GRITMR+ V KSAP S WYGPDR KYLG
Sbjct: 4 STMALSSPSFAGQ-AVKLSPSASEITG---NGRITMRKAVAKSAPSSSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
PFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+
Sbjct: 60 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 120 KNGVKFGEAVWFKAGA 135
+NGVKFGEAVWFKAG+
Sbjct: 120 RNGVKFGEAVWFKAGS 135
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YL GE PGDYG+D GL PE F K + E+IH+RWA
Sbjct: 84 WYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWA 143
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + G L Y G I+ ++A +
Sbjct: 144 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVVAE 200
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YR G + D L+PGG FDPLGLA DPDQFA LKVKE+KNGRLAMFSM
Sbjct: 201 VVLVGGAEYYRATNGLNFD--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 258
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 259 LGFFLQAYVTGEGPVENLAAHLSDPFGNN 287
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 114/142 (80%), Gaps = 7/142 (4%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AFAG+ A++ S +G GR+TMR+TV K S WYG DR KYL
Sbjct: 4 STMALSSPAFAGK-AVKISPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
GPFS + PSYLTGEFPG+YGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 60 GPFSGEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 119
Query: 119 SKNGVKFGEAVWFKAGAQIFSE 140
++NGVKFG+AVWFKAG+QIFSE
Sbjct: 120 ARNGVKFGKAVWFKAGSQIFSE 141
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/207 (54%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
GPDR +L + P YL GE PGDYG+D GLS PE F+K + E+IH+RWAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 108 GALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
GA G + PE +K G G EAVWFK GA + L+Y GN I+ ++ A +VV
Sbjct: 66 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAEVV 122
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
L+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM G
Sbjct: 123 LVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLG 180
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANN 253
FF+QA VTG+GP+ENL H++DP NN
Sbjct: 181 FFIQAYVTGEGPVENLSKHLSDPFGNN 207
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YL GE GDYG+D GL PE FAK + E+IH+RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE L+K G G EAVWFK GA + L+Y G I+ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVV---AE 178
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE+KNGRLAMF+M
Sbjct: 179 VVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YL GE GDYG+D GL PE FAK + E+IH+RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE L+K G G EAVWFK GA + L+Y G I+ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVV---AE 178
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE+KNGRLAMF+M
Sbjct: 179 VVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 135/209 (64%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YL GE GDYG+D GL PE FAK + E+IH+RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE L+K G G EAVWFK GA + L+Y G I+ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVV---AE 178
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE+KNGRLAMF+M
Sbjct: 179 VVLLGGSEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/191 (56%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P YL GE PGDYG+D GLS PE F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG 182
G EAVWFK GA + L+Y GN I+ ++ A +VVL+G E YRI G
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAEVVLVGGAEYYRIINGLDL 117
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM GFF+QA VTG+GP+ENL
Sbjct: 118 E--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENL 175
Query: 243 YDHIADPVANN 253
H++DP NN
Sbjct: 176 SKHLSDPFGNN 186
>gi|210162116|gb|ACJ09656.1| putative chloroplast light harvesting chlorophyll a/b binding
protein [Cupressus sempervirens]
Length = 169
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 125/187 (66%), Positives = 139/187 (74%), Gaps = 23/187 (12%)
Query: 33 GRITMRRTVK---SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
R+TMR+ SA S WYGPDR YL P S + PSYLTGEFPGDY WDTA L ADPE
Sbjct: 2 ARVTMRKATTVSVSASTSPWYGPDRVLYLEP-SGEPPSYLTGEFPGDY-WDTARL-ADPE 58
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 149
T AKNRELEVIH R +MLGALGCV E+L++NGV EAVWF GAQI GLDYL P
Sbjct: 59 T-AKNRELEVIHCR-SMLGALGCV--ELLARNGVF--EAVWFN-GAQI--SVGLDYL--P 107
Query: 150 NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+L+HAQSILAI +CQV+LMG VEGYRI GPLG DP+Y G+FDPL LADDPD FAEL
Sbjct: 108 SLVHAQSILAI-SCQVILMGAVEGYRIASGPLGV-TDPIY-HGSFDPL-LADDPDAFAEL 163
Query: 210 KVKELKN 216
KV +KN
Sbjct: 164 KV--IKN 168
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 150/251 (59%), Gaps = 17/251 (6%)
Query: 16 ALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPG 75
+L++ E +KV V + + T K+ +S+WYG +RP++LGP P+YLTGE PG
Sbjct: 75 SLQRRLEESKKVAVKESSKFQAL-TAKARKESLWYGEERPRWLGPIPYDYPAYLTGELPG 133
Query: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAG 134
DYG+D AGLS D F + E++H+RWAML ALG + PE+L +G F E VW++ G
Sbjct: 134 DYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVG 193
Query: 135 AQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL---- 188
LDYLG P L A Q +L I CQ +LM E R G E L+PL
Sbjct: 194 YSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYARYCG---IEALEPLGIYL 250
Query: 189 -----YPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
YPGG FDPL L+ D ELKVKE+KNGRLAM + GF+ QA +TGKGP++NL
Sbjct: 251 PGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNL 310
Query: 243 YDHIADPVANN 253
+HI+DP NN
Sbjct: 311 VEHISDPFHNN 321
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/101 (86%), Positives = 93/101 (92%)
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVLMG VEGYR+ GGPLGE DP+YPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSM
Sbjct: 144 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 203
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FGFFVQAIVTGKGP+ENL DH+ADPVANNAWAYATNF PG
Sbjct: 204 FGFFVQAIVTGKGPLENLNDHLADPVANNAWAYATNFTPGN 244
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 135/221 (61%), Gaps = 9/221 (4%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
+S WYG +RPK+LGP S P+YL G PGDY +D L+ D + F + E E++H+RWA
Sbjct: 65 ESPWYGEERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWA 124
Query: 106 MLGALGCVFPEILSKNGVK-FGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWA 162
MLGALG PEIL +GV F EA W+ G L+YLG L A Q I I
Sbjct: 125 MLGALGAGIPEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAI 184
Query: 163 CQVVLMGFVEGYRIGG----GPLGEGL--DPLYPGGAFDPLGLADDPDQFAELKVKELKN 216
CQV+LM E R G PLG L D YPGG FDPLGL+ DP FA+L+VKE+KN
Sbjct: 185 CQVLLMFGPEYARACGIEALEPLGLYLPGDKNYPGGLFDPLGLSKDPASFADLQVKEIKN 244
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAY 257
GRLA+ + GF QA VT KGPI +L D ADPV NN +AY
Sbjct: 245 GRLALVAWVGFAAQAAVTRKGPIADLLDFAADPVHNNIFAY 285
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 130/225 (57%), Gaps = 21/225 (9%)
Query: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
WYGPDR P L E P L G PGDYG+D GL+ D ET +K + E++H+RW
Sbjct: 48 WYGPDRALFLPGGLMARDEINP-LLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARW 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
AML A G + PE L+ NG A WF+ GA + + G L++ P N+ + + + A
Sbjct: 107 AMLAAAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVA 166
Query: 163 CQVVLMGFVEGYR-IGGGPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAE 208
V LMG E YR G GP G + +D LYPGG FDPLGLADDP+ AE
Sbjct: 167 ANVALMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAE 226
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
LKVKE+KNGRLAM S GF VQA VTG+GP N H+ADP N
Sbjct: 227 LKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYN 271
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 140/238 (58%), Gaps = 25/238 (10%)
Query: 38 RRTVKSAPQSIWYGPDRPKY---------LGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
T + A ++ +G + K+ GP + P++LTGE+PGDYG+D AGL DP
Sbjct: 5 ESTCQRAFSAVLFGAEMSKFSTMRFDAEQKGPVPYEYPAHLTGEYPGDYGFDIAGLGRDP 64
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLG 147
FA E++H RWAML ALG V PE+L GV F E VW+K G LDYLG
Sbjct: 65 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLG 124
Query: 148 NPNLIHA--QSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGGA-FD 195
P A Q ++ I CQ +LM E R G E L+PL YPGGA FD
Sbjct: 125 IPGFRIAGGQGVIVIAICQALLMVGPEYARYCGI---EALEPLGLYLPGDINYPGGALFD 181
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
PLGL+ DP F +LKVKE+KNGRLAM + GF++QA VTGKGPI+NL +H++DP+ NN
Sbjct: 182 PLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 239
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 127/201 (63%), Gaps = 16/201 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG-VK 124
P +L GEFPGDYG+D AGL DP FA E++H RWAMLGALG V PE+L G V
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGGGPLG 182
F E VW+K G LDYLG P L A Q I+ I CQ +LM E R G
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYCGI--- 119
Query: 183 EGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
E L+PL YPGGA FDPLGL+ DP F ELKVKE+KNGRLAM + GF+VQA
Sbjct: 120 EALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQAA 179
Query: 233 VTGKGPIENLYDHIADPVANN 253
VTGKGP++NL +H++DP+ NN
Sbjct: 180 VTGKGPVQNLIEHLSDPLHNN 200
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 128/224 (57%), Gaps = 19/224 (8%)
Query: 49 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGP R +L G P+YL G GDYG+D GL D T K R E+IH+RWA
Sbjct: 93 WYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWA 152
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI--HAQSILAIWAC 163
ML A G + PE L NG WF+ GA++ + G L+Y P I + + +
Sbjct: 153 MLAAAGIIIPEGLQANGAAIKGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVI 212
Query: 164 QVVLMGFVEGYRIGG-GPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAEL 209
+V L+G VE YR G GP G GLD LYPGG FDPLGLADDP+ FAEL
Sbjct: 213 EVALLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLDNLYPGGPFDPLGLADDPETFAEL 272
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KVKE+KNGRLA+ S+ GF VQ+ VTG+GP N H+ADP N
Sbjct: 273 KVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYN 316
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 140/228 (61%), Gaps = 14/228 (6%)
Query: 29 VADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
+AD + TV S G RP + + P++LTGE+PGD G+D GL+ DP
Sbjct: 338 LADPAHNNLLNTVAMFAAS---GEKRPTWFP--GAEAPAWLTGEYPGDRGFDPLGLAKDP 392
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
E FAKNR+ EV H RWAMLG +GC+ PE+ G+ A W++AGA + + G LDYLGN
Sbjct: 393 EDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLGIAQLPA-WYEAGA-VANTGSLDYLGN 450
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLD-PLYPGGAFDPLGLADDPDQ 205
PNL+HA ++ I+ ++L +E +R G P + + YPGG FDPL L P
Sbjct: 451 PNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPEAKSAERTTYPGGPFDPLKLGASP-- 508
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM MFGF+ Q+ VTG+GP+ NL H+ADP NN
Sbjct: 509 --ELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNN 554
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 134/228 (58%), Gaps = 14/228 (6%)
Query: 29 VADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
+AD + TV S G RP + + P++LTGE+PGD G+D GL+ DP
Sbjct: 129 LADPAHNNLLNTVAMFAAS---GEKRPTWFP--GAEAPTWLTGEYPGDRGFDPFGLAKDP 183
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
FAK R+ EV H RWAMLG +GC+ PE+ G+ A W+ A A + + LDYLGN
Sbjct: 184 ADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIAQLPA-WYDA-ATVANTSNLDYLGN 241
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLD---PLYPGGAFDPLGLADDPDQ 205
PNL+HA ++ I ++LMG VE +R G E YPGG FDPL L P
Sbjct: 242 PNLVHASNVSFIALSTLLLMGPVEAWRWNGALASEAKSAERTTYPGGPFDPLKLGASP-- 299
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM MFGF+ Q+ VTG+GP+ NL H+ADP NN
Sbjct: 300 --ELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNN 345
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 9/142 (6%)
Query: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 174
PE+ G+ A W++AGA + + G LDYLGNPNL+HA ++ I+ ++L +E +
Sbjct: 1 PEVFGNLGIAQLPA-WYEAGA-VANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAW 58
Query: 175 RIGG--GPLGEGLD-PLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
R G P + + YPGG FDPL L P ELK+KE+KNGRLAM MFGF+ Q+
Sbjct: 59 RWNGQIAPDAKSKEWTTYPGGPFDPLKLGASP----ELKLKEIKNGRLAMVGMFGFWAQS 114
Query: 232 IVTGKGPIENLYDHIADPVANN 253
VTG+GP+ NL H+ADP NN
Sbjct: 115 YVTGEGPLANLAAHLADPAHNN 136
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 152/265 (57%), Gaps = 19/265 (7%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S +L+ E +K V + + K+ +S+WYG +RP++LGP
Sbjct: 65 AVKAIANSPLG--ESLQSRMEENKKAAVKNSSKFKALAE-KAKNESLWYGEERPRWLGPI 121
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P+YLTGE PGDYG+D AGL DP F K E++H+RWAML ALG + PE+L
Sbjct: 122 PYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLL 181
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWACQVVLMGFVEGYRIGG 178
G F E VW++ G LDYLG P A Q ++ I CQ +LM E R G
Sbjct: 182 GAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCG 241
Query: 179 GPLGEGLDPL---------YPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
E L+PL YPGGA FDPL L+ DP F ELKVKE+KNGRLAM + GF+
Sbjct: 242 ---IEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFY 298
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
+QA TGKGP++NL DH+ADP NN
Sbjct: 299 IQAAATGKGPVQNLLDHLADPFHNN 323
>gi|308154410|gb|ADO15273.1| light harvesting complex from photosystem I type b [Oxytropis
splendens]
Length = 97
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/97 (88%), Positives = 93/97 (95%)
Query: 91 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 150
FAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+
Sbjct: 1 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 60
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 187
L+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DP
Sbjct: 61 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP 97
>gi|305377034|dbj|BAJ15880.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 96
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/93 (90%), Positives = 90/93 (96%)
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG
Sbjct: 1 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 60
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
NP+LIHAQSILAIWACQV+LMG VEGYRI GGP
Sbjct: 61 NPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 93
>gi|308154406|gb|ADO15271.1| light harvesting complex from photosystem I type b [Oxytropis
campestris subsp. johannensis]
gi|308154408|gb|ADO15272.1| light harvesting complex from photosystem I type b [Oxytropis
maydelliana]
gi|308154412|gb|ADO15274.1| light harvesting complex from photosystem I type b [Oxytropis
arctobia]
Length = 96
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/96 (88%), Positives = 92/96 (95%)
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 60
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP 187
+HAQSILAIWA QV+LMG VEGYRI GGPLGE +DP
Sbjct: 61 VHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP 96
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 127/194 (65%), Gaps = 9/194 (4%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F K + E+IH+RWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y G I +LA+ A +
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-E 188
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
V+L+G E +RI G LG D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMF+M
Sbjct: 189 VILVGGAEYFRITNG-LGFD-DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 246
Query: 225 FGFFVQAIVTGKGP 238
GFF+QA VTG P
Sbjct: 247 LGFFLQAYVTGDVP 260
>gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-like [Oryza sativa Japonica Group]
Length = 98
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/98 (87%), Positives = 92/98 (93%)
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGF
Sbjct: 1 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 60
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 61 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 98
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
QS WYGP RP+ GP + +L G GD G+D GLS + +FAK +E E++H+RWA
Sbjct: 174 QSKWYGPSRPRLPGPLG--SAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWA 231
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHA--QSILAIWA 162
MLG +GC+ PE+L+ GV GE VW+K GA ++ S+ L++ G A Q I I A
Sbjct: 232 MLGVVGCLVPELLALRGVDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAA 291
Query: 163 CQVVLMGFVEGYRIGG----GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVKELK 215
CQ VLMG E R G P+G L D YPGG FDPL A D D F E VKE+K
Sbjct: 292 CQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVK 351
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM +M GFFVQA VT GP++N+ D +ADP NN
Sbjct: 352 NGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPAHNN 389
>gi|89574390|gb|ABD77412.1| chloroplast chlorophyll a/b-binding protein [Zingiber officinale]
Length = 130
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 94/99 (94%)
Query: 110 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
LGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG
Sbjct: 20 LGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMG 79
Query: 170 FVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
VEGYR+ GGPLGE +DPLYPGG+F+PLGLADDP+ FAE
Sbjct: 80 AVEGYRVAGGPLGEVVDPLYPGGSFEPLGLADDPEAFAE 118
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 130/224 (58%), Gaps = 19/224 (8%)
Query: 49 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGP+R +L G + P YL GE GDYG+D GL D E K R E++H+RWA
Sbjct: 46 WYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWA 105
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI--HAQSILAIWAC 163
ML A G + PE L NG WF+ GA++ + G L+Y P + + + A+
Sbjct: 106 MLAAAGILIPEGLQANGADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLI 165
Query: 164 QVVLMGFVEGYRIGG-GPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAEL 209
++VL+G VE +R+ G GP G +GLD LYPGG FDPL LADDP+ FAEL
Sbjct: 166 EIVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPEVFAEL 225
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+VKE KNGRLAM + F +Q+ VTG+GP N HI+DP N
Sbjct: 226 QVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYN 269
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 123/238 (51%), Gaps = 10/238 (4%)
Query: 18 RQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY 77
R SN VR + A GRITM + +WYGPDR YLGPFS QTPSYL GEFPGDY
Sbjct: 24 RPSNAPVRDIAAAATGRITMS-------KELWYGPDRVNYLGPFSAQTPSYLRGEFPGDY 76
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQ 136
GWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K V F + + +
Sbjct: 77 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVHFKDPCGSRPAPK 136
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FD 195
P ++ W + G P G P A
Sbjct: 137 SSPTAASTTSATPTWCTPRASSPCWDSKSP-HGSRPRLPHQRPPRRLGEQRALPRRAVLR 195
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
P+GL P ++V+ + L S F IVTGKGP+ENL DH ADPVA
Sbjct: 196 PVGLRGGPRNLCGVQVQGDQECPLRQCSPCWVFCPGIVTGKGPLENLLDHFADPVAKT 253
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 94/115 (81%), Gaps = 5/115 (4%)
Query: 33 GRITMRRTV-KSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
RITMR+T K P S WYG DR YLGP S + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 23 ARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSAD 82
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
PETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+Q+ G
Sbjct: 83 PETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQVLQGRG 137
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 13/220 (5%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
RR + QS W+G RP +LGP S Q P +L+GE PGDYGWD AGL DP + EL
Sbjct: 114 RRAARQ--QSPWFGAARPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVEL 171
Query: 98 EVIHSRWAMLGALGCVFPEILSKNG-VKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHA- 154
E++H+RWAMLGALG V PE+L G F E W+ G A++ + L YLG P L A
Sbjct: 172 ELLHARWAMLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAG 231
Query: 155 -QSILAIWACQVVLMGFVEGYRIGG----GPLGEGL--DPLYPGG-AFDPLGLADDPDQF 206
Q + I CQV+LM E R G PLG L D YPGG FDPL L+ D +++
Sbjct: 232 GQGVAIIAFCQVLLMFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERY 291
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
++V+E+KNGRLAM + GF QA VT +GP++NL D +
Sbjct: 292 EAMRVREIKNGRLAMVAWLGFAAQAAVTRQGPVQNLLDAV 331
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 99/125 (79%), Gaps = 12/125 (9%)
Query: 10 AFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQ 64
AFAG+ A++ S E V G ITMR+T A ++ WYGPDR KYLGPFS +
Sbjct: 1 AFAGK-AVKLSPE------VLTTGGITMRKTAGKAKPAVSSGSPWYGPDRVKYLGPFSGE 53
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVK
Sbjct: 54 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 113
Query: 125 FGEAV 129
FGEAV
Sbjct: 114 FGEAV 118
>gi|302854487|ref|XP_002958751.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|302854497|ref|XP_002958756.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
gi|300255926|gb|EFJ40207.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|300255931|gb|EFJ40212.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
Length = 98
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 86/96 (89%)
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGF
Sbjct: 1 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 60
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
FVQAIVTGKGPIENL DH+A+P NNA+A+AT F P
Sbjct: 61 FVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 96
>gi|383145055|gb|AFG54073.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145056|gb|AFG54074.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145057|gb|AFG54075.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145058|gb|AFG54076.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145059|gb|AFG54077.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145060|gb|AFG54078.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145061|gb|AFG54079.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145062|gb|AFG54080.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145063|gb|AFG54081.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145064|gb|AFG54082.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145065|gb|AFG54083.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145066|gb|AFG54084.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145067|gb|AFG54085.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145068|gb|AFG54086.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145069|gb|AFG54087.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145070|gb|AFG54088.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145071|gb|AFG54089.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145072|gb|AFG54090.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/83 (95%), Positives = 82/83 (98%)
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIHSRWAMLGALGCVFPE+L+KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 60
Query: 152 IHAQSILAIWACQVVLMGFVEGY 174
IHAQSILAIWACQVVLMG +EGY
Sbjct: 61 IHAQSILAIWACQVVLMGLIEGY 83
>gi|375152320|gb|AFA36618.1| chlorophyll a/b binding protein, partial [Lolium perenne]
Length = 91
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 86/91 (94%)
Query: 175 RIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 234
RI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVT
Sbjct: 1 RIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 60
Query: 235 GKGPIENLYDHIADPVANNAWAYATNFVPGK 265
GKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct: 61 GKGPLENLADHLADPVNNNAWAFATNFVPGK 91
>gi|361068309|gb|AEW08466.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/83 (93%), Positives = 81/83 (97%)
Query: 92 AKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 151
AKNRELEVIHSRWAMLGALGCVFPE+L+K GVKFGEAVWFKAGAQIFSEGGLDYLGNPNL
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 60
Query: 152 IHAQSILAIWACQVVLMGFVEGY 174
IHAQSILAIWACQVVLMG +EGY
Sbjct: 61 IHAQSILAIWACQVVLMGLIEGY 83
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 133/226 (58%), Gaps = 12/226 (5%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYG RP+ GP +L GE GD G+D L DP FA+ RE+E++H+RWAM
Sbjct: 53 SKWYGASRPRLPGPLG--GAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAM 110
Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHA--QSILAIWAC 163
LG +GC+ PE+L+ GV+ GE VW+K GA ++ S+ L++ G A Q I I AC
Sbjct: 111 LGFVGCMVPELLALRGVELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAAC 170
Query: 164 QVVLMGFVEGYRIGG----GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
Q VLMG E R G P+G L D YPGG FDPL A D D F + V+E+KN
Sbjct: 171 QAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKN 230
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
GRLAM +M G FVQA VT KGP++N+ + ++DP N + +
Sbjct: 231 GRLAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFTNVARLL 276
>gi|339716018|gb|AEJ88256.1| putative light harvesting chlorophyll a/b-binding protein [Wolffia
australiana]
Length = 92
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/92 (83%), Positives = 85/92 (92%)
Query: 174 YRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV 233
YR+ GGPLGE +DPLYPGG+FDPL LA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 1 YRVAGGPLGEVVDPLYPGGSFDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 60
Query: 234 TGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
TGKGP+ENL DH+ADPV NNAWAYATNFVPG
Sbjct: 61 TGKGPLENLADHLADPVNNNAWAYATNFVPGN 92
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S WYGP+R +LGP S+ P +L GE PGDYG+D GL+ P + R+ E+I+ RWAM
Sbjct: 102 SDWYGPNRKLFLGPLSDGAPEHLKGELPGDYGFDVLGLATQPTRLERYRQGEIINGRWAM 161
Query: 107 LGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
LG +GC+ PE+L++N GV F E VWFK GA +FSE GL+YLGNP+LIHA+SI AI ++
Sbjct: 162 LGIVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNYLGNPSLIHAKSIAAILVTEI 221
Query: 166 VLMGFVEGYRIGGGPLGEGLD 186
+ +G E +R+ GGPLG D
Sbjct: 222 LFVGAAEAFRVSGGPLGPATD 242
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 57/80 (71%)
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGPLG D +YPG AFDPLGL+ D FAELKVKE+KNGRLAM M G F+Q TGKG
Sbjct: 1 GGPLGPATDLVYPGKAFDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKG 60
Query: 238 PIENLYDHIADPVANNAWAY 257
P++NL DH+ADP N +
Sbjct: 61 PLQNLADHLADPTGANIITF 80
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG--VKFGEAVW 130
+PG +D GLS D FA+ + EV + R AMLG LG + G + +
Sbjct: 12 YPGK-AFDPLGLSKDETAFAELKVKEVKNGRLAMLGMLGLFMQGFATGKGPLQNLADHLA 70
Query: 131 FKAGAQI--FSEGGLDYLGNPNLIHAQ-SILAIWACQVVLMGFVEGYRIGGGPLGEG--- 184
GA I F + L LG + A L+ W + ++ GPL +G
Sbjct: 71 DPTGANIITFHQRVLSDLGGVAMFAATGEKLSDW--------YGPNRKLFLGPLSDGAPE 122
Query: 185 -LDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV 233
L PG FD LGLA P + + E+ NGR AM + G V ++
Sbjct: 123 HLKGELPGDYGFDVLGLATQPTRLERYRQGEIINGRWAMLGIVGCIVPELL 173
>gi|209778997|gb|ACI87809.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 85
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/85 (91%), Positives = 81/85 (95%)
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
L EGLDPLYPGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 1 LAEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 60
Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
NLYDH+ADP NNAWAYATNFVPGK
Sbjct: 61 NLYDHLADPSTNNAWAYATNFVPGK 85
>gi|302854499|ref|XP_002958757.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
gi|300255932|gb|EFJ40213.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
Length = 112
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/92 (81%), Positives = 82/92 (89%)
Query: 172 EGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
GYR+ GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 19 HGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 78
Query: 232 IVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
IVTGKGPIENL DH+A+P NNA+A+AT F P
Sbjct: 79 IVTGKGPIENLNDHLANPAVNNAFAFATKFTP 110
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDRPKYL P+Y+ GE GDYG+D GL + K R EV+H RWA
Sbjct: 58 WYGPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL-GNKGGVEKYRPYEVLHGRWA 116
Query: 106 MLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFS-EGGLDYLGNPNLIHAQSILAIWAC 163
MLG +G + PE L NG AVW+ +GA + L + G PN + LA+
Sbjct: 117 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLA--LAV-IF 173
Query: 164 QVVLMGFVEGYRIG-GGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAM 221
+V + +E YR GP G GLDPLYPGG FDPLGLA DP + ELKVKE+KNGRLAM
Sbjct: 174 EVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAM 233
Query: 222 FSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+ GF VQ VT +GP N H+ADP N
Sbjct: 234 MAFLGFVVQYFVTKEGPYANWSKHLADPFGYN 265
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDRPKYL P+Y+ GE GDYG+D GL + K R EV+H RWA
Sbjct: 65 WYGPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL-GNKGGVEKYRPYEVLHGRWA 123
Query: 106 MLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWAC 163
MLG +G + PE L NG AVW+ +GA + L + G PN + LA+
Sbjct: 124 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLA--LAV-IF 180
Query: 164 QVVLMGFVEGYRIG-GGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAM 221
+V + +E YR GP G GLDPLYPGG FDPLGLA DP + ELKVKE+KNGRLAM
Sbjct: 181 EVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAM 240
Query: 222 FSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+ GF VQ VT +GP N H+ADP N
Sbjct: 241 MAFLGFVVQYFVTKEGPYANWSKHLADPFGYN 272
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/160 (57%), Positives = 111/160 (69%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G IH
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKN--IH 59
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
++A+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 60 INLVVAV-VAEVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 109/160 (68%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 60
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+++ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 61 --NLVVAVVTEVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 11 FAGQTALRQSNEF--VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYL-GPFSEQTPS 67
A Q R +F + + V G+ + + + A WYGPDRPK+L F P
Sbjct: 80 IATQMGARTVADFRDLAQEAVCHMGQTSGNKALMGACNVEWYGPDRPKWLPDAFLAGVPD 139
Query: 68 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK--NGVKF 125
YLTGE+PGDYGWD GLSADP+ FA RE E++H+RWAMLGALGCVFPE+++ NG
Sbjct: 140 YLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAMLGALGCVFPEVINSYYNG-NI 198
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
E VW+KAGA + + +DYLG+ IHA SI+AI QVVLMG E
Sbjct: 199 AEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGAQVVLMGGAE 245
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|302844283|ref|XP_002953682.1| hypothetical protein VOLCADRAFT_106034 [Volvox carteri f.
nagariensis]
gi|300261091|gb|EFJ45306.1| hypothetical protein VOLCADRAFT_106034 [Volvox carteri f.
nagariensis]
Length = 143
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 81/98 (82%)
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
++LMG VEGYR+ G P GEGLDPLY G +FDPLGLADDPD F EL VKE KNGRLAMFSM
Sbjct: 43 MILMGLVEGYRVNGSPAGEGLDPLYHGESFDPLGLADDPDTFTELMVKETKNGRLAMFSM 102
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
FGFF+QAIVTG PIENL DH+A+P NNA+A+AT V
Sbjct: 103 FGFFMQAIVTGNDPIENLNDHLANPGVNNAFAFATKLV 140
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF++A VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNN 156
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+ H+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+ H+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNN 156
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+E+L H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNN 156
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 91/121 (75%), Gaps = 12/121 (9%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPK 56
+T A+ AFAG+ A++ S E V G ITMR+T A ++ WYGPDR K
Sbjct: 6 STMALSSPAFAGK-AVKLSPE------VLTTGGITMRKTAGKAKPAVSSGSPWYGPDRVK 58
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 59 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 118
Query: 117 I 117
+
Sbjct: 119 L 119
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA V G+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNN 156
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+ P+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNN 156
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK GA + L+Y G IH
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKN--IH 59
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
++A+ +VVL+G E YRI G E D L+ GG FDPLGLA DPDQFA LKVKE
Sbjct: 60 INLVVAV-VAEVVLVGGAEYYRIINGLDLE--DKLHHGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF+QA VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNN 156
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 12/224 (5%)
Query: 30 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 89
A+ R M R ++ +S +YG +R K+LG + P++L G GD G+D L+A E
Sbjct: 13 AEKARKEMERA-EARGRSAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFDPLNLAAKSE 71
Query: 90 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAG-AQIFSEGGLDYLG 147
+ RELE++H RWAMLG +G PE L + GV GE VW+K G A++ S+ LDYLG
Sbjct: 72 DLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVWWKVGAAKMNSDIALDYLG 131
Query: 148 NP--NLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLGEGL--DPLYPGGA-FDPLG 198
++ I I ACQ+VLMG E R G P+G L D YPGGA FDP
Sbjct: 132 FSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYPGGAPFDPFK 191
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
+DD ++F + KV E+K+ RLAM + G +QAIVT +GPIENL
Sbjct: 192 FSDDAEEFEKQKVMEIKHCRLAMIAALGCAIQAIVTRQGPIENL 235
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 107/160 (66%), Gaps = 6/160 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA GC+ PE +K G G EAVWFK A + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DPDQFA LKVKE
Sbjct: 62 LVVAVVA---EVVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAMFSMF FF++A VTG+GP+ENL H++DP NN
Sbjct: 117 IKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNN 156
>gi|302854495|ref|XP_002958755.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
gi|300255930|gb|EFJ40211.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
Length = 88
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 78/86 (90%)
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
GGP GEGLDPLYPG +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 1 GGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 60
Query: 238 PIENLYDHIADPVANNAWAYATNFVP 263
PIENL DH+A+P NNA+A+AT F P
Sbjct: 61 PIENLNDHLANPAVNNAFAFATKFTP 86
>gi|192764699|gb|ACF05893.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764701|gb|ACF05894.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764703|gb|ACF05895.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764707|gb|ACF05897.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764709|gb|ACF05898.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764711|gb|ACF05899.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764713|gb|ACF05900.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764715|gb|ACF05901.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764717|gb|ACF05902.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764719|gb|ACF05903.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764721|gb|ACF05904.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764723|gb|ACF05905.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764727|gb|ACF05907.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764729|gb|ACF05908.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764731|gb|ACF05909.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764733|gb|ACF05910.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764735|gb|ACF05911.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764737|gb|ACF05912.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764739|gb|ACF05913.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764741|gb|ACF05914.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764743|gb|ACF05915.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764745|gb|ACF05916.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 90/112 (80%), Gaps = 4/112 (3%)
Query: 99 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 157
VIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 158 LAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFA 207
LA+ QVVLMG VEG+RI G P +GEG D LYPGG FDPLGLADDP FA
Sbjct: 61 LAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPATFA 111
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 122/207 (58%), Gaps = 13/207 (6%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S YG R K+LG + P++L G GD G+D GL D + RELE++H+RWAM
Sbjct: 155 SSLYGARRVKFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKD--DLPRMRELELLHARWAM 212
Query: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGA-QIFSEGGLDYLGNP--NLIHAQSILAIWA 162
LG +G PE+L + GV GE VW+K GA ++ S+ LDY G ++ I I A
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAA 272
Query: 163 CQVVLMGFVEGYRIGG----GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVKELK 215
CQVVLMG E R G P+G L D YPGGA FDP ++DD D+F + KV E+K
Sbjct: 273 CQVVLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIK 332
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENL 242
+GRLAM +M G QA VT GPIENL
Sbjct: 333 HGRLAMIAMLGVAAQAFVTRAGPIENL 359
>gi|351066141|gb|AEQ39045.1| putative light-harvesting complex II chlorophyll-a/b binding
protein [Wolffia arrhiza]
Length = 84
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
GE DPLYPGG+FDPL LA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 1 GEVTDPLYPGGSFDPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 60
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPV NNAWAYATNFVPG
Sbjct: 61 LADHLADPVNNNAWAYATNFVPGN 84
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 105/153 (68%), Gaps = 6/153 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA G + PE L+K G G EAVWFK GA + L+Y G I
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 59
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+LA+ A +VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE
Sbjct: 60 INLVLAVIA-EVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
+KNGRLAMF+M GFF+QA VTG+GP+ENL H+
Sbjct: 117 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
E+IH+RWA+L A G V P +K G G EA+W+K GA + + Y G I+
Sbjct: 38 ELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGATVPIN--- 94
Query: 157 ILAIWACQVVLMGFVEGYR-IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELK 215
+ A +V L+G E YR PLG LD L+PGGAFDPLGLA DPDQFA LKVKE+
Sbjct: 95 LAAAVISEVNLVGGSEYYRSTNKSPLGSDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIM 154
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAMFSM GFFV+A VTG+GP+ENL H++DP NN
Sbjct: 155 NGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNN 192
>gi|192764705|gb|ACF05896.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764725|gb|ACF05906.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 89/112 (79%), Gaps = 4/112 (3%)
Query: 99 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 157
VIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 158 LAIWACQVVLMGFVEGYRIGGGP-LGEGLDPLYPGGA-FDPLGLADDPDQFA 207
LA+ QVVLMG VEG RI G P +GEG D LYPGG FDPLGLADDP FA
Sbjct: 61 LAVLGFQVVLMGLVEGSRINGLPGVGEGND-LYPGGQYFDPLGLADDPATFA 111
>gi|449527137|ref|XP_004170569.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like,
partial [Cucumis sativus]
Length = 79
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 75/79 (94%)
Query: 187 PLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
P+YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+
Sbjct: 1 PIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 60
Query: 247 ADPVANNAWAYATNFVPGK 265
DPV NNAWAYATNFVPGK
Sbjct: 61 TDPVNNNAWAYATNFVPGK 79
>gi|1262849|gb|AAB19041.1| type 1 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 95
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
G G P P G+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIEN
Sbjct: 12 GRGDRPHLPRGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 71
Query: 242 LYDHIADPVANNAWAYATNFVPGK 265
L DH+ADPV NNAWAYATNFVPGK
Sbjct: 72 LADHLADPVNNNAWAYATNFVPGK 95
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G V PE +K G G EAVWFK GA + L Y GN I ++A+ A +
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNS--IPINLVVAVIA-E 57
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 58 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSM 115
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
F FF+QA VTG+GP+ENL H++DP NN
Sbjct: 116 FAFFIQAYVTGEGPVENLAKHLSDPFGNN 144
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 117/209 (55%), Gaps = 16/209 (7%)
Query: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
S YG RP L P P +LTG GD G+D L PE+ A+ ELE++H+RWAM
Sbjct: 171 SPLYGEARP--LLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAM 228
Query: 107 LGALGCVFPEILS-----KNGVKFGEAVWFKAGAQIFSEGGLDY--LGNPNLIHAQSILA 159
L +G PE LS G E VW+K GA + L+Y LG + Q +
Sbjct: 229 LAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAV 288
Query: 160 IWACQVVLMGFVEGYRIGG----GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVK 212
I ACQ VLMG E R G P+G L D YPGGA FDP GL+DD D+FA KV
Sbjct: 289 IAACQAVLMGGPEYARYVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVI 348
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
E+++GRLAM +M G F QAIVTG+GP+ N
Sbjct: 349 EIEHGRLAMVAMLGCFAQAIVTGEGPVAN 377
>gi|210162154|gb|ACJ09675.1| putative chlorophyll a/b-binding protein [Cupressus sempervirens]
Length = 129
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 92/124 (74%), Gaps = 8/124 (6%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
WY DR YL P SE PSYLTGEF DYG DTA S D ET AKNRELEVIHSR +ML
Sbjct: 14 WYEQDRVLYLTPMSEP-PSYLTGEFTSDYGCDTAS-STDTETCAKNRELEVIHSR-SMLS 70
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
AL CV L+ GV EAVWF AGA +FSEGGLDYLG+ +LIHAQSILAIWACQV+LM
Sbjct: 71 ALRCVVA--LATYGVSIVEAVWF-AGA-LFSEGGLDYLGS-SLIHAQSILAIWACQVILM 125
Query: 169 GFVE 172
G VE
Sbjct: 126 GAVE 129
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 91/131 (69%), Gaps = 11/131 (8%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-----SIWYGPDRPK 56
+T A+ +AFAG+ S+ + R+TMR+T A S WYGPDR
Sbjct: 4 STMALSSTAFAGKAVNVPSSSAFGEA------RVTMRKTAAKAKPAAASGSPWYGPDRVL 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE
Sbjct: 58 YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 117
Query: 117 ILSKNGVKFGE 127
+L+ + F E
Sbjct: 118 LLADDPEAFAE 128
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 66/74 (89%)
Query: 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVA 251
G P LADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV
Sbjct: 112 GCVFPELLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 171
Query: 252 NNAWAYATNFVPGK 265
NNAWAYATNFVPGK
Sbjct: 172 NNAWAYATNFVPGK 185
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 86/117 (73%), Gaps = 4/117 (3%)
Query: 151 LIHAQSILAIWACQVVLMGFVEGYRIGG---GPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
LIHA+S+LAI A QV+LMG VEGYR G G GE LD LYPGG FDPLGLADDPD F
Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFP 64
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAW-AYATNFVP 263
ELKVKE+KNGRLAM M GF+ QAIVTG+GP+EN H+ DP A+N A T F P
Sbjct: 65 ELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 103/182 (56%), Gaps = 19/182 (10%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGP R +L P+YLTG+ GDYG+D GL DPE K R E+IH+RWA
Sbjct: 64 WYGPSRVLFLPSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWA 123
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ--SILAIWAC 163
ML A G + PE L+ NG A WF+ GA++ + G L+Y P I + + AI A
Sbjct: 124 MLAAAGMIIPEGLAANGADIKGATWFETGAEMLNGGTLNYFAVPWAIVSNPLPLFAIVAV 183
Query: 164 QVVLMGFVEGY-RIGGGPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAEL 209
+V LMG E Y R G GP G +GLD L+PGG FDPLGLADDP+ F EL
Sbjct: 184 EVGLMGAAENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGPFDPLGLADDPEVFQEL 243
Query: 210 KV 211
KV
Sbjct: 244 KV 245
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 124/227 (54%), Gaps = 32/227 (14%)
Query: 29 VADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
V++G R++M S W P +P+ P+YL G PGD+G+D GL+ P
Sbjct: 36 VSNGSRVSM--------SSEWM-PGQPR---------PAYLDGSSPGDFGFDPLGLAEVP 77
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLG 147
E FA+ +E E+IH RWAML G + PE L G W A + GG YLG
Sbjct: 78 ENFARYKESELIHCRWAMLAVPGVLIPEAL-------GLGNWVSAQQWAATPGGQATYLG 130
Query: 148 NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFA 207
NP + ++ I A + + + FVE R G P E YPGG FDPLG A DP +
Sbjct: 131 NP--VPWGTLPIILAIEFLAVAFVEAKR-GEEPDHEKRK--YPGGPFDPLGFAKDPKKLE 185
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIV-TGKGPIENLYDHIADPVANN 253
E K+KELKNGRLA+ + GF VQAI G GP+ENL H+++P ANN
Sbjct: 186 EYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLSNPWANN 232
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 137/255 (53%), Gaps = 16/255 (6%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP-FS 62
+AI ++ F L +S E R A+ R+ R A YGP R K+L F
Sbjct: 132 TAISKTEFG--AGLAKSIEDRRPELEAERARVERERAAARATMPAHYGPTRRKFLPDGFG 189
Query: 63 EQTPSYLTGEFPGDYGWDTAGL-SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK- 120
P +L G GD G+D GL S P + RELE++H RWAMLG +G PE L++
Sbjct: 190 YPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAAVPEALARF 249
Query: 121 NGVKFGEAVWFKAGAQIFS--EGGLDYLG--NPNLIHAQSILAIWACQVVLMGFVEGYRI 176
G++ GE VW+K GA + + LDYLG ++ + + I ACQ+VLMG E R
Sbjct: 250 GGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLMGGPEYARK 309
Query: 177 GG----GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
G P+G L D YPGGA FDP G++ D F KV E+K+GRLAM +M G F
Sbjct: 310 VGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAMVAMLGCFA 369
Query: 230 QAIVTGKGPIENLYD 244
QA TG GP+ENL +
Sbjct: 370 QAWATGVGPVENLTE 384
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 8/113 (7%)
Query: 38 RRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
++TV P + WYGPDRPK+LGPF + TPSYLTGEFPGDYGWDTAGLSA + K
Sbjct: 47 KKTVSKKPSGPAGAEWYGPDRPKWLGPFFQNTPSYLTGEFPGDYGWDTAGLSATGD-LRK 105
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
R +EVIH RW MLGALGC+ PE++ + E VWFKAGAQIFSEGGLDYL
Sbjct: 106 YRTIEVIHGRWPMLGALGCLVPELIKGD---IAEPVWFKAGAQIFSEGGLDYL 155
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 72/75 (96%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++N
Sbjct: 1 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 60
Query: 122 GVKFGEAVWFKAGAQ 136
GVKFGEAVWFKAG+Q
Sbjct: 61 GVKFGEAVWFKAGSQ 75
>gi|169193|gb|AAA33700.1| Major Cab protein [Petunia x hybrida]
Length = 76
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 73/76 (96%)
Query: 190 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
PGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADP
Sbjct: 1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 60
Query: 250 VANNAWAYATNFVPGK 265
V NNAW+YATNFVPGK
Sbjct: 61 VNNNAWSYATNFVPGK 76
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 118/222 (53%), Gaps = 29/222 (13%)
Query: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR YL G ++ PSYL G GDYG+D GL AD + R EVIH+RWA
Sbjct: 102 WYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWA 160
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
ML G V PE L G VW + G ++F +G G P + + A A QV
Sbjct: 161 MLAIPGVVIPEALGLPG-----GVWTETG-KVFLDG---ETGRPFFLENPIVFA--AVQV 209
Query: 166 VLMGFVEGYRIGG-GPLG-------------EGLDPLYPGGAFDPLGLADDPDQFAELKV 211
LM VE +R G GP G +GLDP+ PGG D +A +P A LKV
Sbjct: 210 ALMAGVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFNVASNPQDLALLKV 269
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KE+KNGRLAM +M G FVQ + TG+GP N H+ADP N
Sbjct: 270 KEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYN 311
>gi|209778965|gb|ACI87793.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 106
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 89/111 (80%), Gaps = 6/111 (5%)
Query: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
GLSADPETFA +RELE IHSR AM+GALGCV PE+L+ +GV+ GEAVW KA FSEGG
Sbjct: 2 GLSADPETFAMHRELE-IHSRRAMMGALGCVIPELLAIDGVRCGEAVWCKAAQ--FSEGG 58
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA 193
LDYL +IHAQSILAIWA QVVL + GYR+GGG LGEGLDPLYPG A
Sbjct: 59 LDYL-RYVMIHAQSILAIWAFQVVLR--LIGYRVGGGRLGEGLDPLYPGSA 106
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 135/261 (51%), Gaps = 38/261 (14%)
Query: 1 MATSAIQQSAFAGQTALRQSNEF----VRKVGVA--DGGRITMRRTVKSAPQSIWYGPDR 54
MA S + +A A A Q ++F + G A +G R++M S + P +
Sbjct: 5 MACSQLVAAAVAPTLAGTQKSKFFGSAITTPGAAFSNGSRVSM---------SAEWLPGQ 55
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114
P+ P+YL G PGD+G+D GL P+ + +E E+IH RWAML GC+
Sbjct: 56 PR---------PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLI 106
Query: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
PE L G W +A + GG YLG P + ++ I A + V + FVE
Sbjct: 107 PEAL-------GLGNWVEAQQWAATPGGQATYLGTP--VPWGTLPVIIAIEFVAIAFVES 157
Query: 174 YRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV 233
RIG P E YPGGAFDPLG + DP +F E K+KE+KNGRLA+ + GF QA
Sbjct: 158 RRIGV-PSAEKRK--YPGGAFDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAA 214
Query: 234 -TGKGPIENLYDHIADPVANN 253
G GP++NL H+ADP NN
Sbjct: 215 YPGTGPLQNLATHLADPWHNN 235
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 115/226 (50%), Gaps = 31/226 (13%)
Query: 47 SIWYGPDRPKYLGP----FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
S WYGP+R YL + PSYL G GDYG+D L D + + R EVIH+
Sbjct: 82 SKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKDGKV-EQYRAAEVIHA 140
Query: 103 RWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
RWAML G V PE L G VW + G ++F +G G P ++ + A A
Sbjct: 141 RWAMLAIPGIVIPEALGIPG-----GVWTETG-KVFLDG---EAGRPEILQNPYLFA--A 189
Query: 163 CQVVLMGFVEGYRIGGGPLGEG---------------LDPLYPGGAFDPLGLADDPDQFA 207
Q+ L VEGYR G P +G LDP+ PGG D +A PD A
Sbjct: 190 IQIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPGGPLDFFNVAATPDDLA 249
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
LKVKE+KNGRLAM +M G FVQ + TG+GP N H+ADP N
Sbjct: 250 VLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYN 295
>gi|8698905|gb|AAF78518.1|AF195221_1 chlorophyll a/b-binding protein [Pyrus pyrifolia]
Length = 79
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 72/76 (94%)
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
MLGALGCVFPE+LS+NGVKFGEAVWFKAGAQIFSEGGL YLGNP+L+HAQSILAIWA QV
Sbjct: 1 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLGYLGNPSLVHAQSILAIWATQV 60
Query: 166 VLMGFVEGYRIGGGPL 181
VLMG VEGYRI GGPL
Sbjct: 61 VLMGAVEGYRIAGGPL 76
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 79/114 (69%), Gaps = 6/114 (5%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLG 59
+T A+ AGQ N + + TMR+T + S WYGPDR KYLG
Sbjct: 4 STMALSSPTLAGQAVKLSPN----APEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLG 59
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV
Sbjct: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 149/284 (52%), Gaps = 48/284 (16%)
Query: 1 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDR 54
MAT A+ S+ FA + A+RQS VG + G + T P G DR
Sbjct: 1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVRAAAT----PPVKQGGVDR 55
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
P + S+Q+ SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLG
Sbjct: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLG 112
Query: 109 ALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
A+G + PE L K G+ E WF+ G I G +Y + ++ ++
Sbjct: 113 AVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMA 163
Query: 167 LMGFVEGYRIGG----GPLGE----GLD--------PLYPGGAF-DPLGLADDPDQFAEL 209
LMGF E R G +G+ GL+ P YPGG F +PLG D EL
Sbjct: 164 LMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKEL 223
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
K+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 224 KLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 148/283 (52%), Gaps = 47/283 (16%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS-----IWYGPDRP 55
MAT A+ S +++ S E R++ + + R V A ++ G DR
Sbjct: 1 MATQALVSS-----SSITASAEAARQILGGRSFQSSSSRKVSFAVRAEATPPAKQGADRQ 55
Query: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGA 109
+ S+Q+ SYL G PGDYG+D GLS DPE F + L E+I+ R+AMLGA
Sbjct: 56 LWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPSWLAYGEIINGRYAMLGA 112
Query: 110 LGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL 167
+G + PEIL K G+ E WFK G I G DY +P ++ ++ L
Sbjct: 113 VGAIAPEILGKAGLIPPETALPWFKTGV-IPPAGTYDYWADP--------YTLFVFELAL 163
Query: 168 MGFVEGYR---------------IGGGPLGEGL-DPLYPGGA-FDPLGLADDPDQFAELK 210
MGF E R +G EG +P+YPGG F+PLG D +LK
Sbjct: 164 MGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLK 223
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KE+KNGRLAM ++ G+FVQA+VTG GP +NL DH++DPV NN
Sbjct: 224 LKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVNNN 266
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 129/229 (56%), Gaps = 39/229 (17%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G DRP + S+Q+ +YL G PGDYG+D GLS DPE F + R L EVI+ R+
Sbjct: 50 GADRPLWFA--SKQSLTYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRY 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGL-DYLGNPNLIHAQSILAIW 161
AMLGA+G + PEIL K G+ E WFK G +F G +Y +P ++
Sbjct: 107 AMLGAVGAIAPEILGKLGLIPPETALPWFKTG--VFPPAGTYNYWADP--------YTLF 156
Query: 162 ACQVVLMGFVEGYRI----GGGPLGE----GL--------DPLYPGGA-FDPLGLADDPD 204
++ LMGF E R G +G+ GL DP YPGG F+PLG D
Sbjct: 157 VFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEK 216
Query: 205 QFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+LK+KE+KNGRLAM ++ G+F Q VTG GP++NL DH+ADPV NN
Sbjct: 217 SLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNN 265
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 107/209 (51%), Gaps = 67/209 (32%)
Query: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
WYGPDR P+ L SE P YL GE PGDYG+D GLS PE F+K + E
Sbjct: 65 WYGPDRRIFLPEGLLDRSE-VPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYE------ 117
Query: 105 AMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
LIHA+ W
Sbjct: 118 ----------------------------------------------LIHAR-----W--- 123
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 124 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 181
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 182 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 210
>gi|168998334|gb|ACA42563.1| hypothetical protein [Camellia sinensis]
Length = 81
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 75/98 (76%), Gaps = 17/98 (17%)
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
MG VEGYRI GGPLGE DPLYP ELKVKE+KNGRLAMFSMFGF
Sbjct: 1 MGAVEGYRIAGGPLGEVTDPLYP-----------------ELKVKEIKNGRLAMFSMFGF 43
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
FVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 44 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 81
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 127/249 (51%), Gaps = 49/249 (19%)
Query: 36 TMRRTVKSAPQSI--------WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGL 84
T R VK+A Q + WYGP+R YL G ++ PSYL G GDYG+D GL
Sbjct: 72 TKRAPVKAARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGL 131
Query: 85 SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG--G 142
AD + R E++H+RWAML G V PE L+ G VW + G ++F +G G
Sbjct: 132 GADGKV-KDYRVAEILHARWAMLAVPGVVIPEALNIPG-----GVWTETG-KVFLDGETG 184
Query: 143 LDYLGNPNLIHAQSILAIW----ACQVVLMGFVEGYRIGG-GPLG-------------EG 184
D SIL W A QVVLMG E +R G GP G G
Sbjct: 185 RD-----------SILEFWPIYAAIQVVLMGGAEKFRQDGVGPAGFVPFKGKFEESAFNG 233
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 244
LDP+ PGG D +A +P LKVKE+KNGRLAM +M G FVQ VTG+GP N
Sbjct: 234 LDPVNPGGPLDFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEGPAANWGK 293
Query: 245 HIADPVANN 253
H+A+P N
Sbjct: 294 HVANPFGYN 302
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 150/284 (52%), Gaps = 46/284 (16%)
Query: 1 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDR 54
MAT A+ S+ FA + A+RQS +G + G ++ S+P G +R
Sbjct: 1 MATQALVSSSSLTFAAE-AVRQSFGARSLPSSIGSSRKGSFVVK--AASSPPVKQNGANR 57
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
+ S+Q+ SYL G PGD+G+D GLS DPE F + R L E+I+ R+AMLG
Sbjct: 58 QLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 109 ALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
A G + PEIL K G+ E WF+ G I G +Y + ++ ++
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYNYWADN--------YTLFVMEMA 165
Query: 167 LMGFVEGYRI----GGGPLGE--------GL----DPLYPGG-AFDPLGLADDPDQFAEL 209
MGF E R G +G+ GL +P YPGG F+PLG D EL
Sbjct: 166 FMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKEL 225
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
K+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 226 KLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 269
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 135/260 (51%), Gaps = 46/260 (17%)
Query: 19 QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 78
QS+E R A + + + VK + +W+ S+Q+ SYL G PGDYG
Sbjct: 42 QSSESSR-TSFAVRSQASSGKPVKQGDRQLWFA----------SKQSLSYLDGSLPGDYG 90
Query: 79 WDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--W 130
+D GL DPE F + L E+I+ R+AMLGA+G + PEIL K G+ E W
Sbjct: 91 FDPLGL-MDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPW 149
Query: 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE-----GYRIGGGP----- 180
F+ G I G DY +P ++ ++ LMGF E YR G
Sbjct: 150 FRTGV-IPPAGTYDYWADP--------FTLFVLEMALMGFAEHRRLQDYRYPGSMSKQYF 200
Query: 181 ------LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV 233
LG +P YPGG F+PLG D ELK+KE+KNGRLAM ++ G+F+Q +V
Sbjct: 201 LGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFIQGLV 260
Query: 234 TGKGPIENLYDHIADPVANN 253
TG GP +NL DH+ADPV NN
Sbjct: 261 TGVGPFQNLLDHLADPVNNN 280
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 128/228 (56%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 109
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA+G + PEIL K G+ E WF+ G +F G + ++
Sbjct: 110 AMLGAVGAIAPEILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFV 160
Query: 163 CQVVLMGFVEGYRIGG----GPLGE--------GL----DPLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R G +G+ GL +P YPGG F +PLG D
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+LK+KE+KNGRLAM ++ G+FVQA+VTG GP +NL DH+ADPV NN
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNN 268
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 128/228 (56%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 109
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA+G + PEIL K G+ E WF+ G +F G + ++
Sbjct: 110 AMLGAVGAIAPEILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFV 160
Query: 163 CQVVLMGFVEGYRIGG----GPLGE--------GL----DPLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R G +G+ GL +P YPGG F +PLG D
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+LK+KE+KNGRLAM ++ G+FVQA+VTG GP +NL DH+ADPV NN
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNN 268
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 132/254 (51%), Gaps = 45/254 (17%)
Query: 25 RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
R+ + + + VK + +W+ S+Q+ SYL G PGDYG+D GL
Sbjct: 45 RRTSFTVRSQASSNKPVKQGDRQLWFA----------SDQSLSYLDGSLPGDYGFDPLGL 94
Query: 85 SADPETFAKNREL------EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQ 136
DPE E E+I+ R+AMLGA+G + PEIL K G+ E WF+ G
Sbjct: 95 -MDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGV- 152
Query: 137 IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGGPLGE----GLD-- 186
I G +Y +P ++ ++ LMGF E R+ G +G+ GL+
Sbjct: 153 IPPAGTYNYWADP--------FTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKF 204
Query: 187 ------PLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
P YPGG F+PLG D ELK+KE+KNGRLAM ++ G+F+Q +VTG GP
Sbjct: 205 LGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPF 264
Query: 240 ENLYDHIADPVANN 253
+NL DH+ADPV NN
Sbjct: 265 QNLLDHLADPVHNN 278
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 150/284 (52%), Gaps = 46/284 (16%)
Query: 1 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDR 54
MAT A+ S+ FA + A+RQS +G + G ++ S+P G +R
Sbjct: 1 MATQALVSSSSLTFAAE-AVRQSFGARSLPSSIGSSRKGSFVVK--AASSPPVKQNGANR 57
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
+ S+Q+ SYL G PGD+G+D GLS DPE F + R L E+I+ R+AMLG
Sbjct: 58 QLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 109 ALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
A G + PEIL K G+ E WF+ G I G +Y + ++ ++
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYNYWADN--------YTLFVMEMA 165
Query: 167 LMGFVEGYRI----GGGPLGE--------GL----DPLYPGG-AFDPLGLADDPDQFAEL 209
MGF E R G +G+ GL +P YPGG F+PLG D EL
Sbjct: 166 FMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKEL 225
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
K+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 226 KLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 269
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 148/281 (52%), Gaps = 42/281 (14%)
Query: 1 MATSAIQQSA---FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKY 57
MAT + S+ FA + A+RQS R + + G VK+A G +R +
Sbjct: 283 MATQVLLSSSSLTFAAE-AVRQSFG-ARSLPSSIGSSRKGSFVVKAAAPVKKGGANRQLW 340
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALG 111
S+Q+ SYL G PGD+G+D GLS DPE F + L E+I+ R+AMLGA G
Sbjct: 341 FA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAG 397
Query: 112 CVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
+ PEIL K G+ E WF+ G I G +Y + ++ ++ MG
Sbjct: 398 AIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYNYWADN--------YTLFVMEMAFMG 448
Query: 170 FVEGYRI----GGGPLGE--------GL----DPLYPGG-AFDPLGLADDPDQFAELKVK 212
F E R+ G +G+ GL +P YPGG F+PLG D ELK+K
Sbjct: 449 FAEHRRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLK 508
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
E+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 509 EVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 549
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA G + PE L+K G K G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI E D L+PGG FDPLGLA DPDQ A LKVKE
Sbjct: 62 LVLAVV---AEVVLLGGAEYYRITNELDFE--DKLHPGGPFDPLGLAKDPDQGALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
+KNGRLAMF+M GFF+QA VTG+GP+ENL H+
Sbjct: 117 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 116/214 (54%), Gaps = 39/214 (18%)
Query: 67 SYLTGEFPGDYGWDTAGLSA--------DPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
SYL G PGD+G+D GL DP+ A + EVIH R+AMLG G V PEIL
Sbjct: 87 SYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS---EVIHCRYAMLGMAGMVAPEIL 143
Query: 119 SKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE---- 172
K G+ E VWFK G I SEG DY +P LA++ +VVLM F E
Sbjct: 144 GKLGLIPAETGLVWFKTGV-IPSEGQYDYWASP--------LALFWIEVVLMQFAELRRW 194
Query: 173 -GYRIGGGP-----------LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRL 219
YR G G DP YPGGA F+ LG D +LK+KELKNGRL
Sbjct: 195 QDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRL 254
Query: 220 AMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
AM + GFF+QA+ TG+GP +NL DH+ADP NN
Sbjct: 255 AMVATLGFFIQAMATGEGPFQNLTDHLADPFNNN 288
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 150/284 (52%), Gaps = 46/284 (16%)
Query: 1 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDR 54
MAT A+ S+ FA + A+RQS +G + G ++ S+P G +R
Sbjct: 1 MATQALVSSSSLTFAAE-AVRQSFGARSLPSSIGSSRKGSFVVK--AASSPPVKQNGANR 57
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
+ S+Q+ SYL G PGD+G+D GLS DPE F + R L E+I+ R+AMLG
Sbjct: 58 QLWFA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 109 ALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
A G + PEIL K G+ E WF+ G I G +Y + ++ ++
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYNYWADN--------YTLFVMEMA 165
Query: 167 LMGFVEGYRI----GGGPLGE--------GL----DPLYPGG-AFDPLGLADDPDQFAEL 209
MGF E R G +G+ GL +P YPGG F+PLG D EL
Sbjct: 166 FMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKEL 225
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
K+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 226 KLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 269
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 148/281 (52%), Gaps = 42/281 (14%)
Query: 1 MATSAIQQSA---FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKY 57
MAT + S+ FA + A+RQS R + + G VK+A G +R +
Sbjct: 299 MATQVLLSSSSLTFAAE-AVRQSFG-ARSLPSSIGSSRKGSFVVKAAAPVKKGGANRQLW 356
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALG 111
S+Q+ SYL G PGD+G+D GLS DPE F + L E+I+ R+AMLGA G
Sbjct: 357 FA--SKQSLSYLDGSLPGDFGFDPLGLS-DPEGVGGFIEPEWLAYGEIINGRFAMLGAAG 413
Query: 112 CVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
+ PEIL K G+ E WF+ G I G +Y + ++ ++ MG
Sbjct: 414 AIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYNYWADN--------YTLFVMEMAFMG 464
Query: 170 FVEGYRI----GGGPLGE--------GL----DPLYPGG-AFDPLGLADDPDQFAELKVK 212
F E R+ G +G+ GL +P YPGG F+PLG D ELK+K
Sbjct: 465 FAEHRRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLK 524
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
E+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 525 EVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 565
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L + P YL GE PGDYG+D GLS PE FAK + E+IH+RWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y G I+ + +
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAV---VAE 189
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNG 217
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNG
Sbjct: 190 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG 240
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 120/221 (54%), Gaps = 40/221 (18%)
Query: 61 FSEQTP-SYLTGEFPGDYGWDTAGLSA--------DPETFAKNRELEVIHSRWAMLGALG 111
FS++ SYL G PGD+G+D GL DP+ A + EVIH R+AMLG G
Sbjct: 58 FSDKAAQSYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYS---EVIHCRYAMLGMAG 114
Query: 112 CVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
V PEIL K G+ E VWFK G I SEG DY +P LA++ +VVLM
Sbjct: 115 MVAPEILGKLGLIPAETGLVWFKTGV-IPSEGQYDYWASP--------LALFWIEVVLMQ 165
Query: 170 FVE-----GYRIGGGP-----------LGEGLDPLYPGGA-FDPLGLADDPDQFAELKVK 212
F E YR G G DP YPGGA F+ LG D +LK+K
Sbjct: 166 FAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLK 225
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELKNGRLAM + GFF+QA+ TG+GP +NL DH+ADP NN
Sbjct: 226 ELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNN 266
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 131/263 (49%), Gaps = 39/263 (14%)
Query: 14 QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP----FSEQTPSYL 69
+T +R++ + V G+ + S +S WYGP+R YL + PSY+
Sbjct: 74 KTVVRKAAPVRKAAPVRKAGKASGVNQAGSD-KSKWYGPNRRLYLPAGLLDINTDVPSYM 132
Query: 70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAV 129
G GDYG+D L D A+ R EV H+RWAML G V PE L GV G
Sbjct: 133 NGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQHARWAMLAVPGVVIPEAL---GVPGGN-- 186
Query: 130 WFKAGAQIFSEGGL---DYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG-- 182
W + G ++F +G + LGNP L A +V L+ VEGYR G P G
Sbjct: 187 WTETG-KVFLDGEAGRPEILGNPYLFTA--------IEVALLAGVEGYRSGKLEAPAGFA 237
Query: 183 -----------EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQA 231
+GLDP+ PGG D L +A P+ A LKVKE+KNGRLAM +M G FVQ
Sbjct: 238 PIYGKFEGKDFKGLDPINPGGPLDFLNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQG 297
Query: 232 IVT-GKGPIENLYDHIADPVANN 253
T G+GP N H+ADP A N
Sbjct: 298 ATTGGEGPATNWAKHVADPFAYN 320
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 102/153 (66%), Gaps = 6/153 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA G + PE L+K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE
Sbjct: 62 LVLAVV---AEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
+KNGRLAMF+M GFF+QA VTG+GP+ENL H+
Sbjct: 117 IKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 133/262 (50%), Gaps = 23/262 (8%)
Query: 2 ATSAIQQSAFAGQTALRQSNEF-VRKVGVADGGRITMRR-----TVKSAPQ-SIWYGPDR 54
A+S I AF+ ++ R + K G R+ + + T +SA + PDR
Sbjct: 6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDR 65
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114
P + P +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G
Sbjct: 66 PLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 123
Query: 115 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMG 169
PE+L+K G+ W+ AG Q + + L + +L WA ++ G
Sbjct: 124 PELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPG 176
Query: 170 FVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGF 227
V I G D YPGG FDPLG P + EL+ KE+KNGRLAM ++ G
Sbjct: 177 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGA 236
Query: 228 FVQAIVTGKGPIENLYDHIADP 249
+ Q I TG GPI+NL+ H+ADP
Sbjct: 237 WFQHIYTGTGPIDNLFAHLADP 258
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP ++ S Q+ SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWVA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA G + PEIL K G+ E WF+ G I G Y + ++
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWADN--------YTLFV 157
Query: 163 CQVVLMGFVEGYRI----GGGPLGE----GLD--------PLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R+ G +G+ GL+ P YPGG F +PLG D
Sbjct: 158 LEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKS 217
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 218 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 128/228 (56%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 109
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA+G + PEIL K G+ E WF+ G I G +Y + ++
Sbjct: 110 AMLGAVGAIAPEILGKAGLIPQETALPWFRTGF-IPPAGTYNYWADS--------YTLFV 160
Query: 163 CQVVLMGFVEGYRIGG----GPLGE--------GL----DPLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R G +G+ GL +P YPGG F +PLG D
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+LK+KE+KNGRLAM ++ G+FVQA+VTG GP +NL DH+ DPV NN
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 109
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA+G + PEIL K G+ E WF+ G +F G + ++
Sbjct: 110 AMLGAVGAIAPEILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFV 160
Query: 163 CQVVLMGFVEGYRIGG----GPLGE--------GL----DPLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R G +G+ GL +P YPGG F +PLG D
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+LK+KE+KNGRLAM ++ G+FVQA+VTG GP +NL DH+ DPV NN
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GDYG+D GL DPE+ + E++HSR+AMLG G +F ++L G++
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE--------GYRIG 177
VW++AGA F D+ LI Q +L +A M FV + G
Sbjct: 115 NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFG 169
Query: 178 GGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M GFFVQA VT
Sbjct: 170 LEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 229
Query: 237 GPIENLYDHIADP 249
GPI+NL +H+++P
Sbjct: 230 GPIDNLVEHLSNP 242
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GDYG+D GL DPE+ + E++HSR+AMLG G +F ++L G++
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 106
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE--------GYRIG 177
VW++AGA F D+ LI Q +L +A M FV + G
Sbjct: 107 NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFG 161
Query: 178 GGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M GFFVQA VT
Sbjct: 162 LEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 221
Query: 237 GPIENLYDHIADP 249
GPI+NL +H+++P
Sbjct: 222 GPIDNLVEHLSNP 234
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP + S Q+ SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA G + PEIL K G+ E WF+ G I G Y + ++
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWADN--------YTLFV 157
Query: 163 CQVVLMGFVEGYRI----GGGPLGE----GLD--------PLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R+ G +G+ GL+ P YPGG F +PLG D
Sbjct: 158 LEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKS 217
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 218 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 128/228 (56%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 53 GSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRY 109
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA+G + PEIL K G+ E WF+ G +F G + ++
Sbjct: 110 AMLGAVGAIAPEILGKAGLIPQETALPWFRTG--VFPPAG-------TYNYWADSYTLFV 160
Query: 163 CQVVLMGFVEGYRIGG----GPLGE--------GL----DPLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R G +G+ GL +P YPGG F +PLG D
Sbjct: 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKS 220
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+LK+KE+KNGRLAM ++ G+FV+A+VTG GP +NL DH+ADPV NN
Sbjct: 221 LKDLKLKEVKNGRLAMLAILGYFVRALVTGVGPYQNLLDHLADPVHNN 268
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GDYG+D GL DPE+ + E++HSR+AMLG G +F ++L G++
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE--------GYRIG 177
VW++AGA F D+ LI Q +L +A M FV + G
Sbjct: 115 NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFG 169
Query: 178 GGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M GFFVQA VT
Sbjct: 170 IEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 229
Query: 237 GPIENLYDHIADP 249
GPI+NL +H+++P
Sbjct: 230 GPIDNLVEHLSNP 242
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + P
Sbjct: 59 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EIL K G+ E WF+ G I G +Y + ++ ++ LMGF E
Sbjct: 118 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEH 168
Query: 174 YRIGG----GPLGE--------GL----DPLYPGG-AFDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL DP YPGG F+PLG D ELK+KE+KN
Sbjct: 169 RRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 228
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 229 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + P
Sbjct: 59 SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EIL K G+ E WF+ G I G +Y + ++ ++ LMGF E
Sbjct: 118 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEH 168
Query: 174 YRIGG----GPLGE--------GL----DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL DP YPGG F+PLG D ELK+KE+KN
Sbjct: 169 RRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 228
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct: 229 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 101/153 (66%), Gaps = 6/153 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA G + PE L+K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE
Sbjct: 62 LVLAVV---AEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
+KNGRLAMF M GFF+QA VTG+GP+ENL H+
Sbjct: 117 IKNGRLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
MLGA G + PE +K G G EAVWFK GA + L+Y GN I+ ++ A +
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIVAVAAE 57
Query: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
VVL+G E YRI G E D L+PGG FDPLGLA DPDQ A LKVKE+KNGRLAMFSM
Sbjct: 58 VVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 115
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 116 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 144
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 101/153 (66%), Gaps = 6/153 (3%)
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH+RWAMLGA G + PE L+K G G EAVWFK GA + L+Y G I+
Sbjct: 2 QAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 61
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
+ +VVL+G E YRI G E D L+PGG FDPLGLA DP+Q A LKVKE
Sbjct: 62 LVLAVV---AEVVLLGGAEYYRITNGLDFE--DKLHPGGPFDPLGLAKDPEQGALLKVKE 116
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHI 246
+KNGRLAMF M GFF+QA VTG+GP+ENL H+
Sbjct: 117 IKNGRLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|356502352|ref|XP_003519983.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
[Glycine max]
Length = 104
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 73/84 (86%)
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I GGPLGE +DP+Y G+ DPLGLADDP+ FAELKVKE KN RLAMFSMFGFFVQAIVTG
Sbjct: 9 IAGGPLGEVIDPIYLEGSIDPLGLADDPEVFAELKVKEFKNRRLAMFSMFGFFVQAIVTG 68
Query: 236 KGPIENLYDHIADPVANNAWAYAT 259
KG +ENL +H+A+PV NNAWAYAT
Sbjct: 69 KGSLENLTNHLANPVNNNAWAYAT 92
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 123/229 (53%), Gaps = 37/229 (16%)
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
P Y+ S+Q+ SYL G PGDYG+D GLS DPE F L EVIH RWAMLG
Sbjct: 64 PLYMLGVSDQSLSYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYAEVIHGRWAMLG 122
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
G PE + VWFK G I ++G D+ P A++ V +M
Sbjct: 123 VAGATAPETMKGFIPDSTAVVWFKNGI-IPAQGSYDFWAPPT--------ALFWVMVCMM 173
Query: 169 GFVE----------GYRIGGGPLG--EGL----DPLYPGGAFDPLGLADDPDQFAELKVK 212
FVE G+R G +G+ +P YPGG+F+P+G+ + +KVK
Sbjct: 174 NFVEINRLTEYANPGFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKN--DMDAMKVK 231
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
E+KNGRLAM + FG VQAI+TG+GP++NL DH+ DP A+N TNF
Sbjct: 232 EIKNGRLAMMAFFGIMVQAIITGEGPVKNLTDHVTDPFAHN---LLTNF 277
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ +YL G PGD+G+D GLS DPE F + + L E+I+ R+AMLGA G + P
Sbjct: 59 SKQSLTYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAP 117
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EIL K G+ E WF+ G I G DY +P ++ ++ LMGF E
Sbjct: 118 EILGKAGLIPPETALPWFQTGV-IPPAGTYDYWADP--------YTLFVFEMALMGFAEH 168
Query: 174 YRIGG----GPLGE----GL--------DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL DP YPGG F+PLG D ELK+KE+KN
Sbjct: 169 RRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVKN 228
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 229 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GDYG+D GL DPE+ + E++HSR+AMLG G +F ++L G++
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE--------GYRIG 177
VW++AGA F D+ LI Q +L +A M FV + G
Sbjct: 115 NLPVWYEAGAVKF-----DFACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFG 169
Query: 178 GGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M GFFVQA VT
Sbjct: 170 LEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 229
Query: 237 GPIENLYDHIADP 249
GPI+NL +H+++P
Sbjct: 230 GPIDNLVEHLSNP 242
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 128/238 (53%), Gaps = 45/238 (18%)
Query: 41 VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL 97
VK + +W+ S+Q+ SYL G PGD+G+D GLS DPE F + + L
Sbjct: 49 VKQGNRQLWFA----------SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWL 97
Query: 98 ---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLI 152
E+I+ R+AMLGA+G + PEIL K G+ E WF+ G I G Y +P
Sbjct: 98 AYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFRTGV-IPPAGTYSYWADP--- 153
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGG----GPLGEGL------------DPLYPGGA-FD 195
++ ++ LMGF E R+ G +G+ +P YPGG F+
Sbjct: 154 -----YTLFVFEMALMGFAEHRRLQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFN 208
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
PLG D +LK+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 209 PLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNN 266
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 123/245 (50%), Gaps = 46/245 (18%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---T 90
R T + A + +W+ S Q+ SYL G PGDYG+D GLS DP
Sbjct: 47 RATSDKPATKANRQLWFA----------SSQSLSYLDGTLPGDYGFDPLGLS-DPAGAGN 95
Query: 91 FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGG-LD 144
F L E+I+ R+AMLGA G + PEI K G+ E VWFK G +F G +
Sbjct: 96 FMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGKIGIIPQETAVVWFKTG--VFPPAGTYN 153
Query: 145 YLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLGEGL------------DPL 188
Y +P ++ ++ LMGF E R G +G+ DP
Sbjct: 154 YWADP--------YTLFFLEMALMGFAEHRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPA 205
Query: 189 YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIAD 248
YPGG F+P G D LK+KE+KNGRLAM ++ G+F+QA TG GP +NL DH+AD
Sbjct: 206 YPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLAD 265
Query: 249 PVANN 253
P ANN
Sbjct: 266 PFANN 270
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 133/259 (51%), Gaps = 46/259 (17%)
Query: 7 QQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 66
+++F G LR S +F+ VG R+V A ++ PDRP + P
Sbjct: 30 TKASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPP 75
Query: 67 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 126
+L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV
Sbjct: 76 EWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LN 134
Query: 127 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------IG 177
W+ AG Q +Y + ++ ++VL+G+ EG R +
Sbjct: 135 TPSWYTAGEQ-------EYFTD--------TTTLFVIELVLIGWAEGRRWADIIKPGCVN 179
Query: 178 GGPLG-----EGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQ 230
P+ G D YPGG FDPLG P + EL+ KE+KNGRLAM ++ G + Q
Sbjct: 180 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 239
Query: 231 AIVTGKGPIENLYDHIADP 249
I TG GPI+NL+ H+ADP
Sbjct: 240 HIYTGTGPIDNLFAHLADP 258
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP + S Q+ SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA G + PEIL K G+ E WF+ G I G Y + ++
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPPETALPWFQTGV-IPPAGTYTYWAD--------NYTLFV 157
Query: 163 CQVVLMGFVEGYRI----GGGPLGE----GLD--------PLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R+ G +G+ GL+ P YPGG F +PLG D
Sbjct: 158 LEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKS 217
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 218 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 46/245 (18%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---T 90
R T + A + +W+ S Q+ SYL G PGDYG+D GLS DP
Sbjct: 47 RATSDKPATKANRQLWFA----------SSQSLSYLDGTLPGDYGFDPLGLS-DPAGAGN 95
Query: 91 FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGV--KFGEAVWFKAGAQIFSEGG-LD 144
F L E+I+ R+AMLGA G + PEI K G+ + VWFK G +F G +
Sbjct: 96 FMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGKIGIIPQQTAVVWFKTG--VFPPAGTYN 153
Query: 145 YLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLGEGL------------DPL 188
Y +P ++ ++ LMGF E R G +G+ DP
Sbjct: 154 YWADP--------YTLFFLEMALMGFAEHRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPA 205
Query: 189 YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIAD 248
YPGG F+P G D LK+KE+KNGRLAM ++ G+F+QA TG GP +NL DH+AD
Sbjct: 206 YPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLAD 265
Query: 249 PVANN 253
P ANN
Sbjct: 266 PFANN 270
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 108 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 53 SKQSLSYLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 111
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EI K G+ E WFK G I G +Y + ++ + LMGF E
Sbjct: 112 EIFGKMGIIPPETALPWFKTGV-IPPAGTYNYWADS--------YTLFVFNMALMGFAEH 162
Query: 174 YRI----GGGPLGE----GL--------DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R+ G +G+ GL DP YPGG F+PLG + ELK+KE+KN
Sbjct: 163 RRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKN 222
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 223 GRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNN 259
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGD+G+D GLS DPE F + + L E+I+ R+AMLG G + P
Sbjct: 61 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAP 119
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EIL K G+ E WF+ G I G Y +P ++ ++ LMGF E
Sbjct: 120 EILGKLGLIPPETALPWFQTGV-IPPAGTYSYWADP--------YTLFVLEMALMGFAEH 170
Query: 174 YRIGG----GPLGEGL------------DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ DP YPGG F+PLG D ELK+KE+KN
Sbjct: 171 RRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKN 230
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ GFF+Q +VTG GP +NL DH+ADPV NN
Sbjct: 231 GRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNN 267
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 117/235 (49%), Gaps = 29/235 (12%)
Query: 37 MRRTVKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
++ TVK+A S WYGP R YL + PSYL G+ GDYG+D GL AD +
Sbjct: 55 VKTTVKTADLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQ 113
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
R EVIH+RWAML G V PE L+ G G+ W + G ++F EG G L
Sbjct: 114 YRVAEVIHARWAMLAVPGIVIPEALNIAG---GD--WRETG-KVFLEGSTGRFGPAELWL 167
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEG---------------LDPLYPGGAFDPLG 198
++ A +VLMG E +R G LDP+ PGG D
Sbjct: 168 GIAV----APLIVLMGGAEKFRSDPASAPSGFVPFKGSFTGKDFAKLDPINPGGPLDFYN 223
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+A P LKVKE+KNGRLAM +M G FVQ TG+GP N H+ADP N
Sbjct: 224 VAATPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTGEGPAANWGKHVADPFGYN 278
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 130/262 (49%), Gaps = 42/262 (16%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVA----DGGRITMRRTVKSAPQSIWYGPDRPK 56
MATS ++ + G +L + ++ V GR+TM S + P +P+
Sbjct: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTM---------SAEWMPGQPR 51
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE
Sbjct: 52 ---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPE 102
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
L G W +A GG YLGNP + ++ I + V + F E R
Sbjct: 103 AL-------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQR 153
Query: 176 IGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QA 231
DP YPGGAFDPLG + DP +F E K+KE+KNGRLAM + GF V Q+
Sbjct: 154 TMEK------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQS 207
Query: 232 IVTGKGPIENLYDHIADPVANN 253
G GP+ENL H++DP NN
Sbjct: 208 AYPGTGPLENLASHLSDPWHNN 229
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 135/256 (52%), Gaps = 37/256 (14%)
Query: 23 FVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
F K V+ R + ++ + G +RP + S Q+ +YL G PGDYG+D
Sbjct: 22 FGTKPAVSTSRRKSSFVVKATSTPPVKQGANRPLWFA--SSQSLTYLDGSLPGDYGFDPL 79
Query: 83 GLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAG 134
GLS DPE F + R L E+I+ R+AMLGA G + PEIL K G+ E WF+ G
Sbjct: 80 GLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTG 138
Query: 135 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGGPLGE----GLD 186
I G Y + ++ ++ LMGF E R+ G +G+ GL+
Sbjct: 139 V-IPPAGTYSYWADN--------YTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 189
Query: 187 --------PLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
P YPGG F +PLG + ELK+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 190 KGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFVQGLVTGVG 249
Query: 238 PIENLYDHIADPVANN 253
P +NL DH+ADPV NN
Sbjct: 250 PYQNLLDHLADPVNNN 265
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGD+G+D GLS DPE F + + L E+I+ R+AMLG G + P
Sbjct: 61 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAP 119
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EIL K G+ E WF+ G I G Y +P ++ ++ LMGF E
Sbjct: 120 EILGKLGLIPPETALPWFQTGV-IPPAGTYSYWADP--------YTLFVLEMALMGFAEH 170
Query: 174 YRIGG----GPLGEGL------------DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ DP YPGG F+PLG D ELK+KE+KN
Sbjct: 171 RRFQDWAKPGSMGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKN 230
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ GFF+Q +VTG GP +NL DH+ADPV NN
Sbjct: 231 GRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNN 267
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 110/202 (54%), Gaps = 33/202 (16%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G+ GDYG+D GL DPE+ + E++HSR+AMLG G +F ++L G++
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
VW++AGA F D+ LI Q +LMGF E R
Sbjct: 115 NLPVWYEAGAVKF-----DFASTKTLI---------VVQFLLMGFAETKRYVDYVSPGSQ 160
Query: 176 -------IGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
G EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M GF
Sbjct: 161 AKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGF 220
Query: 228 FVQAIVTGKGPIENLYDHIADP 249
FVQA VT GPI+NL +H+++P
Sbjct: 221 FVQASVTHTGPIDNLVEHLSNP 242
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 127/238 (53%), Gaps = 45/238 (18%)
Query: 41 VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL 97
VK + +W+ S+Q+ SYL G PGD+G+D GLS DPE F + + L
Sbjct: 49 VKQGNRQLWFA----------SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWL 97
Query: 98 ---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLI 152
E+I+ R+AMLGA+G + PEIL K G+ E WF+ G I G Y +P
Sbjct: 98 AYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFRTGV-IPPAGTYSYWADP--- 153
Query: 153 HAQSILAIWACQVVLMGFVEGYRIGG----GPLGEGL------------DPLYPGGA-FD 195
++ ++ LMGF E R G +G+ +P YPGG F+
Sbjct: 154 -----YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFN 208
Query: 196 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
PLG D +LK+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 209 PLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNN 266
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 22/260 (8%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWY----GPDRPK 56
+ +++ +A A +++ F+ G GR+ +R+ S+ ++ + PDRP
Sbjct: 3 LVSASSSTTAVAALPGAARASSFLG--GAGRSGRLLLRQAESSSARASFAVRAAAPDRPI 60
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
+ P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE
Sbjct: 61 WFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPE 118
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFV 171
L+K G+ W+ AG Q + + L + IL WA ++ G V
Sbjct: 119 FLTKIGI-LNTPSWYTAGEQQY------FTDTTTLFIIELILIGWAEGRRWADIIKPGCV 171
Query: 172 EGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFV 229
I G D YPGG FDPLG P++ EL+ KE+KNGRLAM ++ G +
Sbjct: 172 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWF 231
Query: 230 QAIVTGKGPIENLYDHIADP 249
QA TG GPI+NL+ H+ADP
Sbjct: 232 QAEYTGTGPIDNLFAHLADP 251
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F ELKVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP N
Sbjct: 217 PLENLATHLADPWHKN 232
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 110/199 (55%), Gaps = 17/199 (8%)
Query: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
K P + P++L G PGD+G+D GL+ DP + A+ RE EV++ RWAMLG G + P
Sbjct: 39 KLWAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAP 98
Query: 116 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
E++ G+ W A + G YLGN ++LA+ + + +VE
Sbjct: 99 ELV-------GQGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAV---EFFCLSWVE--- 145
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
I G + + +YPGGAFDPLG D KVKEL+NGRLAM + G + Q I G
Sbjct: 146 ISRGLEKDPMKRIYPGGAFDPLGFGKDEVN----KVKELRNGRLAMVAFVGMWCQGIHVG 201
Query: 236 KGPIENLYDHIADPVANNA 254
GP+ NL DH+ADP+ NNA
Sbjct: 202 GGPVSNLMDHLADPLHNNA 220
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 119/241 (49%), Gaps = 38/241 (15%)
Query: 18 RQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDY 77
R S+ GR+TM S + P +P+ P++L G PGD+
Sbjct: 26 RWSSRLPFCANATTSGRVTM---------SAEWMPGQPR---------PAHLDGSSPGDF 67
Query: 78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 137
G+D GL+ PE F + +E EV H RWAML G + PE L G W KA
Sbjct: 68 GFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL-------GLGNWVKAQEWA 120
Query: 138 FSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGA 193
GG YLGNP + S+ I + V + F E R DP YPGGA
Sbjct: 121 AVPGGQATYLGNP--VPWGSLPTILVIEFVAIAFAEHQRTMEK------DPEKKKYPGGA 172
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVAN 252
FDPLG + DP +F E K+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP N
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
Query: 253 N 253
N
Sbjct: 233 N 233
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 127/259 (49%), Gaps = 26/259 (10%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA+ QQ A L Q + VR GVA R ++R +A + W P P
Sbjct: 1 MASIVAQQLA----AGLTQKSRTVRPRGVASKARASVRVGAVAAARPTWL-PGSP----- 50
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P++L G P DYG+D L ADPE + E++H RWAMLG G V PE+L+K
Sbjct: 51 ----APAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTK 106
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYR 175
G+ W AG +LG L Q + WA + G +
Sbjct: 107 IGMA-DLPNWIDAGKWDGY-----WLGAGPLFFVQMAMMNWAEVRRWQDMKAPGTMNEDP 160
Query: 176 IGGGPLGE-GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 234
+ G G+ D YP G FDP+G A DP + ELK KE+ NGRLAM ++ G F QAI T
Sbjct: 161 LTGANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVGCFAQAIST 220
Query: 235 GKGPIENLYDHIADPVANN 253
G GP++NL+ H+ADP NN
Sbjct: 221 GTGPVDNLFTHLADPGHNN 239
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 119/227 (52%), Gaps = 38/227 (16%)
Query: 33 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F
Sbjct: 65 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFE 106
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNL 151
+ +E E+ H RWAML G + PE L G W KA +G YLGNP
Sbjct: 107 RFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP-- 157
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAE 208
+ ++ I A + + + F E R DP YPGGAFDPLG + DP +F E
Sbjct: 158 VPWGNLPTILAIEFLAIAFAEQQRT------MEKDPEKKKYPGGAFDPLGFSKDPAKFEE 211
Query: 209 LKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANNA 254
LK+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP N +
Sbjct: 212 LKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNTS 258
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 52 QPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL---- 107
Query: 123 VKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA +G YLGNP + ++ I A + + + F E R
Sbjct: 108 ---GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRT----- 157
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F ELK+KE+KNGRLAM + GF V Q+ G G
Sbjct: 158 -MEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 106/190 (55%), Gaps = 14/190 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYL G PGD+G+D+ GL P + +E E+IH RWAML G + PE L
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL------- 108
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W KA GG YLG P + ++ I A + + + FVE R +
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDS 163
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLY 243
YPGGAFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+ G GP+ENL
Sbjct: 164 EKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLA 223
Query: 244 DHIADPVANN 253
H+ADP NN
Sbjct: 224 THLADPWHNN 233
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGD+G+D GLS DPE F + R L EVI+ R+AMLGA G + P
Sbjct: 59 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAP 117
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EI G+ E WFK G I G +Y +P ++ ++ LMGF E
Sbjct: 118 EIFGSLGLIPPETALPWFKTGV-IPPAGTYNYWADP--------YTLFVFEMALMGFAEH 168
Query: 174 YRIGG----GPLGE----GL--------DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL DP YPGG F+PLG D ELK+KE+KN
Sbjct: 169 RRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKN 228
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ G+F+Q +VTG GP +NL DH++DPV NN
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNN 265
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP + S Q+ SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA G + PEIL K G+ E WF+ G I G Y + ++
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWADN--------YTLFV 157
Query: 163 CQVVLMGFVEGYRI----GGGPLGE----GLD--------PLYPGGAF-DPLGLADDPDQ 205
++ LMGF E R+ G +G+ GL+ P YPGG F +PLG D
Sbjct: 158 LEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKS 217
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+A PV NN
Sbjct: 218 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNN 265
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 115/224 (51%), Gaps = 34/224 (15%)
Query: 49 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
WYG D P +LG S + PSYLTGE PGDY +D GL DP K E++H+RW L
Sbjct: 71 WYGEDGPPWLGSISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWVTLA 130
Query: 109 ALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYL--GNPNLIHAQSILAIWACQV 165
+ V P+IL+ G V F E VW++AG LDYL +L +Q + I CQ+
Sbjct: 131 FVSAVIPKILNLLGAVHFVEPVWWRAGYSKLKVNTLDYLRIQGLHLAGSQGAVVIAICQI 190
Query: 166 VLMGFVEGYRIGG----GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGR 218
+ E R G PLG L D YPGGA FDPL L++DP+ F ELKVKE+KNG
Sbjct: 191 LKQVGPEYARXCGTEALKPLGIYLPCDINYPGGALFDPLNLSNDPEAFEELKVKEVKNG- 249
Query: 219 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
+L DHI+DP NN + NF+
Sbjct: 250 ----------------------SLIDHISDPFHNNLLG-SLNFI 270
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 121/235 (51%), Gaps = 27/235 (11%)
Query: 21 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWD 80
++F + V+ G +M R SA + P +P+ PSYL G PGD+G+D
Sbjct: 24 SKFAAAMPVSVGATNSMSRFSMSAD----WMPGQPR---------PSYLDGSAPGDFGFD 70
Query: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSE 140
GL P + +E E+IH RWAML G + PE L G W KA
Sbjct: 71 PLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIP 123
Query: 141 GG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGL 199
GG YLG P + ++ I A + + + FVE R + YPGGAFDPLG
Sbjct: 124 GGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGY 178
Query: 200 ADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 253
+ DP +F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL H+ADP NN
Sbjct: 179 SKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 233
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 123/249 (49%), Gaps = 28/249 (11%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 67
AF G+ SN +A R+ TV +A + PDRP + P
Sbjct: 29 SKAFPGRKLKVNSN-------IAAPVRVRSTTTVCAAAE-----PDRPLWFP--GSTPPP 74
Query: 68 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE 127
+L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L+K G+
Sbjct: 75 WLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNT 133
Query: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGPLG 182
W+ AG Q + + L + I WA ++ G V I
Sbjct: 134 PSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKL 187
Query: 183 EGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
G D YPGG FDPLG P + EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 188 TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 247
Query: 241 NLYDHIADP 249
NL+ H+ADP
Sbjct: 248 NLFAHLADP 256
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 123/249 (49%), Gaps = 28/249 (11%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 67
AF G+ SN +A R+ TV +A + PDRP + P
Sbjct: 29 SKAFLGRKLKVNSN-------IAAPVRVRSTTTVCAAAE-----PDRPLWFP--GSTPPP 74
Query: 68 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE 127
+L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L+K G+
Sbjct: 75 WLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNT 133
Query: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGPLG 182
W+ AG Q + + L + I WA ++ G V I
Sbjct: 134 PSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKL 187
Query: 183 EGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
G D YPGG FDPLG P + EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 188 TGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 247
Query: 241 NLYDHIADP 249
NL+ H+ADP
Sbjct: 248 NLFAHLADP 256
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 129/262 (49%), Gaps = 42/262 (16%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVA----DGGRITMRRTVKSAPQSIWYGPDRPK 56
MATS ++ + G +L + ++ V GR+TM S + P +P+
Sbjct: 1 MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYATTSGRVTM---------SAEWMPGQPR 51
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE
Sbjct: 52 ---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPE 102
Query: 117 ILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
L G W +A GG YLGNP + ++ I + V + F E R
Sbjct: 103 AL-------GLGNWVQAQEWAAEPGGQATYLGNP--VPWGTLPTILVIEFVAIAFAEHQR 153
Query: 176 IGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QA 231
DP YPGGAFDPLG + DP +F E K+KE+KNGRLAM + F V Q+
Sbjct: 154 TMEK------DPEKKKYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQS 207
Query: 232 IVTGKGPIENLYDHIADPVANN 253
G GP+ENL H++DP NN
Sbjct: 208 AYPGTGPLENLASHLSDPWHNN 229
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 121/226 (53%), Gaps = 33/226 (14%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP + S Q+ SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
AMLGA G + PEIL K G+ E + G + ++ +
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPAG-------TYTYWADNYTLFVLE 159
Query: 165 VVLMGFVEGYRI----GGGPLGE----GLD--------PLYPGGAF-DPLGLADDPDQFA 207
+ LMGF E R+ G +G+ GL+ P YPGG F +PLG D
Sbjct: 160 MALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLK 219
Query: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 220 ELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GLS+DP++ N + E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 108 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V + G D YPGG FDPLG P + EL+ KE+KNGRLAM ++
Sbjct: 161 KPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAV 220
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 221 MGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 120/238 (50%), Gaps = 24/238 (10%)
Query: 26 KVGVADGGRITMRRTV------KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW 79
K G R+T+R+ +S PDRP + P +L G PGD+G+
Sbjct: 31 KASFLSGKRLTVRKHTSPVVASRSVTVCAVADPDRPLWFP--GSTPPPWLDGSLPGDFGF 88
Query: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFS 139
D GL +DPET N + E++H RWAMLGA G PE L+K G+ W+ AG
Sbjct: 89 DPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSWYDAGK---- 143
Query: 140 EGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA 193
L+Y + + ++ I WA ++ G V I G D YPGG
Sbjct: 144 ---LEYFTDTTTLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTGTDVGYPGGL 200
Query: 194 -FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
FDPLG P++ EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct: 201 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GLS+DP++ N + E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 108 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V + G D YPGG FDPLG P + EL+ KE+KNGRLAM ++
Sbjct: 161 KPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAV 220
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 221 MGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAG 119
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + I WA ++
Sbjct: 120 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADIL 172
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P + EL+ KE+KNGRLAM ++
Sbjct: 173 KPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAV 232
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 233 MGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 134/265 (50%), Gaps = 27/265 (10%)
Query: 2 ATSAIQQ-SAFAGQTALRQSNEFV---RKVGVADGGRITMRR-TVKSAPQSIWY----GP 52
A+SAI S + + L Q F+ K G ++ +++ T +A +S+ P
Sbjct: 6 ASSAIAAVSISSSRQVLSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAARSVTVCVAADP 65
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DRP + P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G
Sbjct: 66 DRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGI 123
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVV 166
PE L+K G+ W+ AG L+Y + + + I WA ++
Sbjct: 124 FIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLFIVELFFIGWAEGRRWADIL 175
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM ++
Sbjct: 176 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAV 235
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 236 MGAWFQHIYTGTGPIDNLFAHLADP 260
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 121/229 (52%), Gaps = 20/229 (8%)
Query: 32 GGRITMRRTVKSAPQSIWY----GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
G R + T K+A +S + P+RP + P +L G PGD+G+D GL +D
Sbjct: 22 GARTSFLGTGKAATRSSFTVRTAAPERPIWFP--GSTPPPWLDGSLPGDFGFDPWGLGSD 79
Query: 88 PETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PE+ N + E++H RWAMLGA G PE+L+K G+ W+ AG Q + +
Sbjct: 80 PESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTD 132
Query: 148 NPNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD 201
L + IL WA ++ G V I G D YPGG FDPLG +
Sbjct: 133 TTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGN 192
Query: 202 -DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
P++ EL+ KE+KNGRLAM ++ G + QA TG GPI+NL+ H+ADP
Sbjct: 193 GSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 241
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
P+RP + P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 49 PERPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAG 106
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 107 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 159
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P + EL+ KE+KNGRLAM ++
Sbjct: 160 KPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAV 219
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 220 MGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
PE L+K G+ W+ AG Q +Y + ++ ++V +G+
Sbjct: 120 IFIPEFLTKLGI-LNTPSWYTAGEQ-------EYFTD--------TTTLFIVELVFIGWA 163
Query: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKELK 215
EG R P DP+ YPGG FDPLG P + EL+ KE+K
Sbjct: 164 EGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIK 223
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
NGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 113/205 (55%), Gaps = 32/205 (15%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGDYG+D GL +P + E++H R+AM G G + +++ +G+
Sbjct: 62 PPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIS- 120
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI--------- 176
VWF+AGA F D+ + A++ Q++LMGFVE R
Sbjct: 121 NLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFVETKRYMDIVNPGSQ 166
Query: 177 --GGGPLG-----EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G LG EGL P YPGG F+P+GLA D E+K+KE+KNGRLAM +M GFF
Sbjct: 167 AEEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFF 226
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
VQA VT GPI+NL H++DP NN
Sbjct: 227 VQASVTHVGPIDNLLIHLSDPFNNN 251
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 49 WYGPDRPKYL--GPFSEQT--PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
WYG +R YL G T PSY+ G GDYG+D L AD + R EVIH+RW
Sbjct: 82 WYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFDPLKLGADGK-INDYRAAEVIHARW 140
Query: 105 AMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
AML G V PE L G VW + G ++F +G G P ++ I A Q
Sbjct: 141 AMLAIPGIVIPEALGIPG-----GVWTETG-KVFLDG---EAGRPEILQNPIIFA--GIQ 189
Query: 165 VVLMGFVEGYRIG---------------GGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
+ L VEGYR G G GLDP+ PGG D +A P+ A L
Sbjct: 190 IALFAAVEGYRSGKVAPPEGFVPGKGKFSGSDFAGLDPINPGGPLDFFNVASTPEDLAIL 249
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KVKE+KNGRLAM +M G FVQ + TG+GP N H+ADP N
Sbjct: 250 KVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYN 293
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 4 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 59
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 60 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------ 108
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 109 SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 168
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 169 PLENLATHLADPWHNN 184
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GLS+DP++ N + E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAG 107
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 108 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V + G D YPGG FDPLG P + EL+ KE+KNGRLAM ++
Sbjct: 161 KPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAV 220
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 221 MGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 124/258 (48%), Gaps = 29/258 (11%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA + + SA + +L S++ V + + S + P +P+
Sbjct: 1 MAANTLMSSAISAFPSLLSSSKSRFAAAVPLSSFVVTNASSSRFSMSADWMPGQPR---- 56
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 57 -----PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL-- 109
Query: 121 NGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 110 -----GLGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAISFVEHQR---- 158
Query: 180 PLGEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTG 235
DP YPGGAFDPLG + DP F E KVKE+KNGRLA+ + GF V Q+ G
Sbjct: 159 --SMEKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPG 216
Query: 236 KGPIENLYDHIADPVANN 253
GP+ENL H+ADP NN
Sbjct: 217 TGPLENLAAHLADPWHNN 234
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 113/205 (55%), Gaps = 32/205 (15%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P+YL G PGDYG+D GL PE + E++H R+AM G G + +++ +G+
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIG- 118
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI--------- 176
VWF+AGA F D+ + A++ Q++LMGFVE R
Sbjct: 119 NLPVWFEAGATKF-----DF---------ANTTALFFVQLLLMGFVETKRYMDFVSPGSQ 164
Query: 177 --GGGPLG-----EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G LG EGL P YPGG F+P+GLA D + E+K+KE+KNGRLAM +M GF
Sbjct: 165 AKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFI 224
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
VQA VT GPI+NL H++DP N
Sbjct: 225 VQASVTHAGPIDNLLTHLSDPFNKN 249
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 110/206 (53%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
P+RP + P +L G PGD+G+D GL +DPET + E++H RWAMLGA G
Sbjct: 64 PNRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG 121
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 122 IFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDKTTLFIVEMIFIGWAEGRRWADI 173
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG PD+ EL+ KE+KNGRLAM +
Sbjct: 174 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLA 233
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + QAI TG GPI+NL+ H+ADP
Sbjct: 234 VMGAWFQAIYTGTGPIDNLFAHLADP 259
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 52 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA + GG YLG P + ++ + A + V + FVE R
Sbjct: 108 ---GLGNWVKAQEWAAAPGGQATYLGQP--VPWGTLPTVLAIEFVAIAFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 52 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ + A + + + FVE R
Sbjct: 108 ---GLGNWVKAQEWAALPGGQATYLGNP--VPRGTLPTVLAIEFLAISFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 10/189 (5%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG-VK 124
PSYL G GD +D LS E +N ELE++H RWAML +G PEILS++G ++
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLMGFVEGYRIGG---- 178
E +W+K G ++ ++YLG ++ A I+ I CQ VLMG E R G
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYVGIESL 344
Query: 179 GPLGEGL--DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
P+G L D YPGG FDP L+ D ++ EL+V E+K+GRLAM +M G F QA VT
Sbjct: 345 EPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTR 404
Query: 236 KGPIENLYD 244
+GP+ N+ +
Sbjct: 405 EGPVANVLE 413
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 115/216 (53%), Gaps = 18/216 (8%)
Query: 42 KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 101
++ P PDRP + P +L G PGD+G+D GL++DPE+ N++ E++H
Sbjct: 54 RTVPVCAAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVH 111
Query: 102 SRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI- 160
RWAMLGA G PE L+K G+ W+ AG L+Y + + ++ I
Sbjct: 112 CRWAMLGAAGIFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLFIVELIFIG 163
Query: 161 WA-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKE 213
WA ++ G V I G D YPGG FDPLG P++ EL+ KE
Sbjct: 164 WAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKE 223
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct: 224 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 116/218 (53%), Gaps = 34/218 (15%)
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
+RP +L P++L G GD+G+D GL DP+ + E++HSR+AM G G
Sbjct: 1 ERPLWLP--GTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGI 58
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
+F ++L +G + VWF+AGA F D+ L + Q++LMGFVE
Sbjct: 59 LFTDLLRASG-RTDIPVWFEAGATKF-----DFADTTTL---------FVVQLILMGFVE 103
Query: 173 GYR----------------IGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELK 215
R G EGL+ YPGG F+PLG A+DP + L+ KE+K
Sbjct: 104 TKRWMDIVKPGSQAAEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIK 163
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM +M GF VQA VT GPIENL H++DPV N
Sbjct: 164 NGRLAMVAMVGFMVQAYVTKTGPIENLLTHLSDPVHNT 201
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
P+RP + P +L G PGD+G+D GLS+DP++ N + E++H RWAMLGA G
Sbjct: 49 PERPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAG 106
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 107 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 159
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P + EL+ KE+KNGRLAM ++
Sbjct: 160 KPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAV 219
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 220 MGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 117/236 (49%), Gaps = 24/236 (10%)
Query: 21 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWD 80
F+ G A R + + + IW+ P P +L G PGD+G+D
Sbjct: 25 TSFLGAAGKAAASRTSFAVRAAAPERPIWFPGSTP----------PPWLDGSLPGDFGFD 74
Query: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSE 140
GL +DPE+ N + E++H RWAMLGA G PE+L+K G+ W+ AG Q +
Sbjct: 75 PWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY-- 131
Query: 141 GGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-F 194
+ L + IL WA ++ G V I G D YPGG F
Sbjct: 132 ----FTDTTTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
Query: 195 DPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
DPLG P++ EL+ KE+KNGRLAM ++ G + QA TG GPI+NL+ H+ADP
Sbjct: 188 DPLGYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 243
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 110/205 (53%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
P+RP + P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G
Sbjct: 51 PERPIWFP--GSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 108
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE+L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 109 IFIPELLTKIGI-LNTPSWYTAGEQTY------FADTTTLFIVELILIGWAEGRRWADII 161
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM ++
Sbjct: 162 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAMLAV 221
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + QA TG GPI+NL+ H+ADP
Sbjct: 222 MGAWFQAEYTGTGPIDNLFAHLADP 246
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D GL P + +E E+IH RWAML G + PE L
Sbjct: 53 QPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEAL---- 108
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLG P + ++ I A + + + FVE R
Sbjct: 109 ---GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR------ 157
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F ELKVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 158 SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 217
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 218 PLENLATHLADPWHNN 233
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 53 QPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL---- 108
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLG P + ++ I + V + F E R
Sbjct: 109 ---GLGNWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILVIEFVAIAFAEHQRT----- 158
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E K+KE+KNGRLAM + GF V Q+ G G
Sbjct: 159 -MEKDPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 217
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 218 PLENLASHLADPWHNN 233
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G
Sbjct: 55 PDRPIWFP--GSVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAG 112
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 113 IFIPEFLTKIGI-LSTPSWYTAGEQQY------FTDTTTLFIIELILIGWAEGRRWADII 165
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM ++
Sbjct: 166 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAMLAV 225
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPVANN 253
G + QA TG GPI+NL+ H+ADP N
Sbjct: 226 MGAWFQAEYTGTGPIDNLFAHLADPGHAN 254
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 110/206 (53%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
P+RP + P +L G PGD+G+D GL +DPET + E++H RWAMLGA G
Sbjct: 65 PNRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG 122
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 123 IFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDKTTLFIVEMIFIGWAEGRRWADI 174
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG PD+ EL+ KE+KNGRLAM +
Sbjct: 175 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLA 234
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + QAI TG GPI+NL+ H+ADP
Sbjct: 235 VMGAWFQAIYTGTGPIDNLFAHLADP 260
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 52 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ + A + + + FVE R
Sbjct: 108 ---GLGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTVLAIEFLAISFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 53 QPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL---- 108
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLG P + ++ I + V + F E R
Sbjct: 109 ---GLGNWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILVIEFVAIAFAEHQRTMEK-- 161
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E K+KE+KNGRLAM + GF V Q+ G G
Sbjct: 162 ----DPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 217
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 218 PLENLASHLADPWHNN 233
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 135/267 (50%), Gaps = 33/267 (12%)
Query: 1 MATSAIQQSAFAGQTALRQSN----------EFVRKVGVADGGRITMRRTVKSAPQSIWY 50
+A +AI +S Q +L SN ++R G ++ +A Q
Sbjct: 2 VALAAIARSFHFQQHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRCKQICAAAQQ---- 57
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
RP +L P+YL G PGD+G+D GL DPE+ + E++HSR+AMLG L
Sbjct: 58 ---RPTWLPGLDP--PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVL 112
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + ++L GV +WF+AGA + ++ L+ Q +L +A M F
Sbjct: 113 GILVTDLLRVAGVN-SIPIWFEAGAVKY-----EFANTGTLVVVQLLLMGYAETRRYMDF 166
Query: 171 V-------EGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMF 222
V EG G GL+P YPGG +PLGLA D E K+KE+KNGRLAM
Sbjct: 167 VSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMV 226
Query: 223 SMFGFFVQAIVTGKGPIENLYDHIADP 249
++ G FVQA VT GPI+NL +H+++P
Sbjct: 227 AILGIFVQASVTHVGPIDNLVEHLSNP 253
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 114/224 (50%), Gaps = 18/224 (8%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+ T +S + PDRP + P +L G PGD+G+D GL +DPET
Sbjct: 44 KYTAPTAARSVTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRW 101
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
N + E++H RWAMLGA G PE L+K G+ W+ AG L+Y + +
Sbjct: 102 NVQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLF 153
Query: 154 AQSILAI-WA-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQ 205
+ I WA ++ G V I G D YPGG FDPLG P++
Sbjct: 154 IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 213
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct: 214 IKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 104/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH WAML G + PE L
Sbjct: 48 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEAL---- 103
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLGNP + ++ I A + + + FVE R
Sbjct: 104 ---GLGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAISFVEHQR------ 152
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
G DP YPGGAFDPLG + DP F E KVKELKNGRLA+ + GF V Q+ G G
Sbjct: 153 SMGKDPEKKKYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTG 212
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 213 PLENLAAHLADPWHNN 228
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 110/206 (53%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL++DPE+ N + E++H RWAMLGA G
Sbjct: 74 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG L+Y + + + I WA +
Sbjct: 132 IFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLFIVELFFIGWAEGRRWADI 183
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM +
Sbjct: 184 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 243
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + Q I TG GPI+NL+ H+ADP
Sbjct: 244 VMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 131/273 (47%), Gaps = 35/273 (12%)
Query: 5 AIQQSAFAG-QTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
+I +AF+ T S F RK+ GR+ + T + PDRP +
Sbjct: 4 SIASTAFSSLPTREVSSKHFPRKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFP--GS 61
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
P +L G PGD+G+D GL +DPE + E++HSRWAML G + PE L + G
Sbjct: 62 SPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGF 121
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR----IGGG 179
W+ AGAQ ++ +P ++ Q+ LMG+VEG R I G
Sbjct: 122 -IENFSWYDAGAQ-------EFFADPT--------TLFVVQLALMGWVEGRRWADLINPG 165
Query: 180 PLGEGL----------DPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGF 227
+ L D YPGG FDP P+ L+ KE+KNGRLAM + GF
Sbjct: 166 CVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGF 225
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
QAI TG+GPIENL HIADP N ++ T+
Sbjct: 226 CFQAIYTGEGPIENLMAHIADPGHCNVFSAFTS 258
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 110/206 (53%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL++DPE+ N + E++H RWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG L+Y + + + I WA +
Sbjct: 121 IFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLFIVELFFIGWAEGRRWADI 172
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM +
Sbjct: 173 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + Q I TG GPI+NL+ H+ADP
Sbjct: 233 VMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 128/262 (48%), Gaps = 41/262 (15%)
Query: 1 MATSAIQQ-SAFAGQTALRQSNEF------VRKVGVADGGRITMRRTVKSAPQSIWYGPD 53
MAT+A Q S A Q + F V +G ++G R+ M + P+
Sbjct: 1 MATAAAAQVSRVVTGVATAQKSSFFAGSSSVSLLGCSNGSRVCMAEWLPGNPR------- 53
Query: 54 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
PSYL G PGD+G+D GL PE + +E E+IH+RWAML G +
Sbjct: 54 ------------PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVL 101
Query: 114 FPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVE 172
PE L G W A + GG YLGNP + ++ I A + + + F E
Sbjct: 102 IPEAL-------GYGNWVSAQKWAATPGGQATYLGNP--VPWGNLPVILAIEFLAIAFAE 152
Query: 173 GYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
R G P E YPGGAFDPLG + + ELK+KE+KNGRLA+ + GF VQAI
Sbjct: 153 SQR-NGEPDPEKRK--YPGGAFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFAVQAI 208
Query: 233 V-TGKGPIENLYDHIADPVANN 253
G GP+ENL H+ADP N
Sbjct: 209 AYPGTGPLENLKTHLADPWHNT 230
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G
Sbjct: 63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG L+Y + + + I WA +
Sbjct: 121 IFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLFVVELFFIGWAEGRRWADI 172
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM +
Sbjct: 173 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + Q I TG GPI+NL+ H+ADP
Sbjct: 233 VMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 118/227 (51%), Gaps = 38/227 (16%)
Query: 33 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F
Sbjct: 42 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFE 83
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNL 151
+ +E E+ H RWAML G + PE L G W KA +G YLGNP
Sbjct: 84 RFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP-- 134
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAE 208
+ ++ I A + + + F E R DP YPGGAFDPLG + DP +F E
Sbjct: 135 VPWGNLPTILAIEFLAIAFAEQQRT------MEKDPEKKKYPGGAFDPLGFSKDPAKFEE 188
Query: 209 LKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANNA 254
LK+KE+KNGRLAM + GF V Q+ G GP+EN H+ADP N +
Sbjct: 189 LKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTHLADPWHNTS 235
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G
Sbjct: 74 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG L+Y + + + I WA +
Sbjct: 132 IFIPEFLTKIGI-LNTPSWYTAGE-------LEYFTDTTTLFVVELFFIGWAEGRRWADI 183
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM +
Sbjct: 184 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 243
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + Q I TG GPI+NL+ H+ADP
Sbjct: 244 VMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 117/228 (51%), Gaps = 19/228 (8%)
Query: 32 GGRITMRRTVKSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GG+ +R+ + P P+RP + P +L G PGD+G+D GL +DP
Sbjct: 30 GGKTLLRQAEAARPSFAVRAAADPNRPIWFP--GSTPPPWLDGSLPGDFGFDPWGLGSDP 87
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
E+ N + E++H RWAMLGA G PE L+K GV W+ AG Q + +
Sbjct: 88 ESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV-LNTPFWYTAGEQQY------FTDT 140
Query: 149 PNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD- 201
L + IL WA ++ G V I G D YPGG FDPLG
Sbjct: 141 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSG 200
Query: 202 DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
P++ EL+ KE+KNGRLAM ++ G + QA TG GPI+NL+ H+ADP
Sbjct: 201 SPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 248
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 128/257 (49%), Gaps = 24/257 (9%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
++T + Q +G L V+K A GGR +M TV + + PDRP +
Sbjct: 15 ISTPSSGQKNGSGGCFLSGRKLRVKKERAAIGGR-SMGTTVCAVAE-----PDRPLWFP- 67
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L+K
Sbjct: 68 -GSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK 126
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFVEGY 174
GV W+ AG L+Y + + + I WA ++ G V
Sbjct: 127 IGV-LNTPSWYSAGE-------LEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTD 178
Query: 175 RIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
I G D YPGG FDPLG P + +L+ KE+KNGRLAM ++ G + Q I
Sbjct: 179 PIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQHI 238
Query: 233 VTGKGPIENLYDHIADP 249
T GPI+NL+ H+ADP
Sbjct: 239 YTATGPIDNLFAHLADP 255
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
P+RP + P +L G PGD+G+D GLS+DP++ N + E++H RWAMLGA G
Sbjct: 49 PERPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 106
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE L+K G+ W+ AG Q + + L + IL WA ++
Sbjct: 107 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 159
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG P + EL+ KE+KNGRL M ++
Sbjct: 160 KPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLTMLAV 219
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G + Q I TG GPI+NL+ H+ADP
Sbjct: 220 MGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 119/244 (48%), Gaps = 33/244 (13%)
Query: 13 GQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 72
G+T LRQ+ V R + + IW+ P P +L G
Sbjct: 41 GKTLLRQAEAARPSFAV---------RAAADSDRPIWFPGSTP----------PPWLDGS 81
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L+K GV W+
Sbjct: 82 LPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGV-LNTPFWYT 140
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGPLGEGLDP 187
AG Q + + L + IL WA ++ G V I G D
Sbjct: 141 AGEQQY------FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDV 194
Query: 188 LYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245
YPGG FDPLG P++ EL+ KE+KNGRLAM ++ G + QA TG GPI+NL+ H
Sbjct: 195 GYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAH 254
Query: 246 IADP 249
+ADP
Sbjct: 255 LADP 258
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 4 QPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL---- 59
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLG P + ++ I + V + F E R
Sbjct: 60 ---GLGNWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILVIEFVAIAFAEHQRTMEK-- 112
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E K+KE+KNGRLAM + GF V Q+ G G
Sbjct: 113 ----DPEKKKYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 168
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 169 PLENLASHLADPWHNN 184
>gi|297740654|emb|CBI30836.3| unnamed protein product [Vitis vinifera]
Length = 110
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 77/117 (65%), Gaps = 28/117 (23%)
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
PN L I++ +V+LMG VEGYRI GGPLGE
Sbjct: 22 PNTFAKNRELEIFS-EVILMGAVEGYRIAGGPLGE------------------------- 55
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct: 56 --VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 110
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL------- 109
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W KA GG YLG P + ++ I + + + FVE R
Sbjct: 110 GLGNWVKAQEWAAVPGGQATYLGQP--VPWGTLPTILVIEFLAIAFVEHQR------SME 161
Query: 185 LDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
DP YPGGAFDPLG + DP++ E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 162 KDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 221
Query: 241 NLYDHIADPVANN 253
NL H+ADP NN
Sbjct: 222 NLATHLADPWHNN 234
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG ++Y + + + I WA +
Sbjct: 120 IFIPEFLTKIGI-LNTPSWYSAGE-------VEYFTDTTTLFIVELFFIGWAEGRRWADI 171
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM +
Sbjct: 172 LKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 231
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + Q I TG GPI+NL+ H+ADP
Sbjct: 232 VMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 108/200 (54%), Gaps = 32/200 (16%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G PGD+G+D GLS+DPE+ N + E++HSRWAMLGA G PE L+K G+
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-L 59
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGE 183
W+ AG Q +Y + ++ ++V +G+ EG R P
Sbjct: 60 NTPSWYTAGEQ-------EYFTDTT--------TLFIVELVFIGWAEGRRWADILNPGCV 104
Query: 184 GLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG FDPLG P + EL+ KE+KNGRLAM ++ G +
Sbjct: 105 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWF 164
Query: 230 QAIVTGKGPIENLYDHIADP 249
Q I TG GPI+NL+ H+ADP
Sbjct: 165 QHIYTGTGPIDNLFAHLADP 184
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G PGD+G+D GL+ PE F + +E EV H RWAML G + PE L
Sbjct: 57 QPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL---- 112
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLG P + ++ I A + V + F E R
Sbjct: 113 ---GLGNWVKAQEWAAVPGGQATYLGAP--VPWGTLPTILAVEFVAIAFAEHQRTMEK-- 165
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP + E K+KE+KNGRLAM + GF V Q+ G G
Sbjct: 166 ----DPEKKKYPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 221
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 222 PLENLAAHLADPWHNN 237
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 125/230 (54%), Gaps = 26/230 (11%)
Query: 41 VKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100
VK+A + +W+ + P P++L G GDYG+D L +P+T + E++
Sbjct: 25 VKAATRPVWFPGNPP----------PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 160
H R+AMLGA G + I +K G+ F E W+ AG + + +D+ P L+ Q L
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGLGFPE--WYDAGKVVVEKNNIDF---PTLLITQLYLMG 129
Query: 161 WACQVVLMGFVE-GYRIGGGPLG-----EGLDPLYPGGAF-DPLGLAD-DPDQFAELKVK 212
WA F G + G LG +GL+ YPGG F DP+GL+ D D++ E K K
Sbjct: 130 WAETKRWYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQK 189
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
E+KNGRLAM + GF Q TGKGP++NL DH+ADP N +ATN V
Sbjct: 190 EIKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADP---NHVNFATNGV 236
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G
Sbjct: 62 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 165
PE L+K G+ W+ AG ++Y + + + I WA +
Sbjct: 120 IFIPEFLTKIGI-LNTPSWYSAGE-------VEYFTDTTTLFIVELFFIGWAEGRRWADI 171
Query: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFS 223
+ G V I G D YPGG FDPLG P++ EL+ KE+KNGRLAM +
Sbjct: 172 LKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 231
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADP 249
+ G + Q I TG GPI+NL+ H+ADP
Sbjct: 232 VMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 31/200 (15%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GD+G+D GL DPE+ + E++HSR+AM G G +F ++L G+
Sbjct: 74 PPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLS- 132
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
VW++AGA F + ++ Q++LMGFVE R
Sbjct: 133 NLPVWYEAGATKF--------------QFANTTTLFIVQMLLMGFVETKRYMDFKNPGSQ 178
Query: 176 -----IGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
G EGL+P YPGG +PLG+A D E K+KE+KNGRLAM ++ G FV
Sbjct: 179 GEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFV 238
Query: 230 QAIVTGKGPIENLYDHIADP 249
QA VT GP+ENL +H++DP
Sbjct: 239 QASVTHVGPLENLVEHLSDP 258
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 113/204 (55%), Gaps = 16/204 (7%)
Query: 54 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
RP +L +P YL G GDYG+D GL DPE+ + E++H+R+AMLG G +
Sbjct: 60 RPTWLPGL--DSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGIL 117
Query: 114 FPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-- 171
F ++L G++ VW++AGA + ++ L+ Q + +A M +V
Sbjct: 118 FTDLLRVTGIR-KLPVWYEAGAVKY-----EFASTRTLLVVQLLWMGYAETRRYMDYVSP 171
Query: 172 -----EGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
EG G EGL+P YPGG +P GLA D + K+KE+KNGRLAM +M
Sbjct: 172 GSQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAML 231
Query: 226 GFFVQAIVTGKGPIENLYDHIADP 249
G FVQA VT GPI+NL +H++DP
Sbjct: 232 GIFVQAAVTHTGPIDNLLEHLSDP 255
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 120/241 (49%), Gaps = 40/241 (16%)
Query: 29 VADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
A R+ TV + + PDRP + P +L G PGD+G+D GL +DP
Sbjct: 44 TASPSRVRSTSTVCTVAE-----PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLGSDP 96
Query: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
E+ N + E++HSRWAMLGA G PE L+K G+ W+ AG Q +Y +
Sbjct: 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-LNTPSWYTAGEQ-------EYFTD 148
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL------------YPGGA- 193
++ ++V +G+ EG R P DP+ YPGG
Sbjct: 149 --------TTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLW 200
Query: 194 FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY-DHIADPVA 251
FDPLG P + EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP A
Sbjct: 201 FDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHA 260
Query: 252 N 252
Sbjct: 261 T 261
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 127/251 (50%), Gaps = 38/251 (15%)
Query: 10 AFAGQTALRQSNEFV----RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQT 65
AFAG + +S F +GV +G R++M S + P +P+
Sbjct: 15 AFAGTFSSAKSRFFSPTNSLSLGVCNGSRVSM---------SAEWMPGQPR--------- 56
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P++L G PGD+G+D GL PE + +E E+IH RWAML G + PE L
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL------- 109
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNP-NLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
G W +A GG YLG P + IL+I+ + M F E R G L +
Sbjct: 110 GLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLK---MAFAESQRNGEPDLEK 166
Query: 184 GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT-GKGPIENL 242
YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF VQA G GP+ENL
Sbjct: 167 RK---YPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENL 223
Query: 243 YDHIADPVANN 253
H++DP N
Sbjct: 224 ATHLSDPWHKN 234
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 101/190 (53%), Gaps = 14/190 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 106
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W KA + GG YLG P + ++ I A + V + FVE R +
Sbjct: 107 GLGNWVKAQEWAATPGGQATYLGQP--VPWGTLPIILAIEFVAIAFVEHQRSMEK---DT 161
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV-TGKGPIENLY 243
YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + G VQ G GP+ENL
Sbjct: 162 EKKKYPGGAFDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLA 221
Query: 244 DHIADPVANN 253
H+ADP NN
Sbjct: 222 THLADPWHNN 231
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 117/226 (51%), Gaps = 38/226 (16%)
Query: 33 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F
Sbjct: 42 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFE 83
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNL 151
+ +E E+ H RWAML G + PE L G W KA +G Y G P
Sbjct: 84 RFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYFGVP-- 134
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAE 208
+ ++ I A + + + F E R DP YPGGAFDPLG + DP +F E
Sbjct: 135 VPWGNLPTILAIEFLAIAFAEQQRT------MEKDPEKKKYPGGAFDPLGFSKDPAKFEE 188
Query: 209 LKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 253
LK+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP NN
Sbjct: 189 LKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHLADPWHNN 234
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 126/257 (49%), Gaps = 37/257 (14%)
Query: 23 FVRKVGVADGGRITMR-RTVKSAPQSIW--YGPDRPKYLGPFSEQTPSYLTGEFPGDYGW 79
F+RK+G G+ ++ K ++ PDRP + P +L G PGD+G+
Sbjct: 58 FIRKIGTCQVGKAKVKLNATKGGVSTVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGF 115
Query: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFS 139
D GL +DPE + E++HSRWAML G + PE L G WF AGA+
Sbjct: 116 DPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPEWLESLGF-IENYNWFDAGAR--- 171
Query: 140 EGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL--------- 188
+Y +P ++ Q+VLMG+VEG R P ++P
Sbjct: 172 ----EYFADPT--------TLFIVQLVLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKP 219
Query: 189 ---YPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243
YPGG FDPL P+ L+ KE+KNGRLAM + GF QA+ TG+GPIENL
Sbjct: 220 DVGYPGGLWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLM 279
Query: 244 DHIADPVANNAWAYATN 260
HIADP N ++ T+
Sbjct: 280 AHIADPGHCNIFSAFTS 296
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL------- 108
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W KA GG YLGNP + ++ I + + + FVE R
Sbjct: 109 GLGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SME 160
Query: 185 LDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV-TGKGPIE 240
DP YPGGAFDPLG + DP +F E K+KE+KNGRLA+ + G VQ G GP+E
Sbjct: 161 KDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLE 220
Query: 241 NLYDHIADPVANN 253
NL H+ADP NN
Sbjct: 221 NLATHLADPWHNN 233
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + ++L G+
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLS- 125
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VWF+AGA + ++ LI Q +L +A M F+ EG G
Sbjct: 126 KIPVWFEAGAVKY-----EFTNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAKEGSFFGL 180
Query: 179 GPLGEGLDPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
EGL+P YPGG +PLGLA D E K+KE+KNGRLAM ++ G FVQA VT G
Sbjct: 181 EASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVG 240
Query: 238 PIENLYDHIADP 249
PI+NL +H+++P
Sbjct: 241 PIDNLVEHLSNP 252
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 115/217 (52%), Gaps = 35/217 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET----FAKN--RELEVIHSRWAMLGALGCVFP 115
SEQ+ SYL G PGDYG+D GLS DP+ N R E+I+ R+AMLGA G + P
Sbjct: 65 SEQSLSYLDGSLPGDYGFDPLGLS-DPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAP 123
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
EI K G+ E WF+ G I G Y +P ++ ++ LMGF E
Sbjct: 124 EIFGKIGLIPQETAIPWFQTGV-IPPLGQYSYWADP--------YTLFVLEMALMGFAEH 174
Query: 174 YRIGG----GPLGEGL------------DPLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ DP YPGG F+ LG D +LKVKE+KN
Sbjct: 175 RRAQDYYKPGSMGKQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKN 234
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GRLAM ++ G+F+QAI TG GP +NL DH++DP NN
Sbjct: 235 GRLAMLAVLGYFIQAIFTGVGPFQNLLDHLSDPANNN 271
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 119/223 (53%), Gaps = 36/223 (16%)
Query: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
P Y+ S+Q+ SYL G PGDYG+D GLS DPE F + L EVIH RWAMLG
Sbjct: 57 PLYVLGNSDQSLSYLDGSLPGDYGFDPLGLS-DPEGAGGFINPQWLAYSEVIHGRWAMLG 115
Query: 109 ALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
G V PE+L G+ E VW+KAG I ++G DY NP I+
Sbjct: 116 VAGMVAPEVLGGLGIIPQETGLVWYKAG-MIPAQGTYDYWANP--------FTIFWINAA 166
Query: 167 LMGFVEGYR---------------IGGGP-LGEGLDPLYPGGAFDPLGLADDPDQFAELK 210
LM F E R IG LG +P YPGG F+ +G A+++
Sbjct: 167 LMNFAELRRAQDYWNPGSMGKQELIGWEKMLGGSGEPAYPGGFFNIMG--QGKSDMAKMR 224
Query: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
VKE+KNGRLAM + F QA++TG+GP++NL DH++DP +N
Sbjct: 225 VKEIKNGRLAMMACFACGAQAVMTGEGPVKNLIDHVSDPFGHN 267
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 52 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W +A GG YLGNP + ++ I A + + + FVE R
Sbjct: 108 ---GLGNWVQAQEWAAIPGGQATYLGNP--VPWGNLPTILAIEFLAIAFVEHQRSMEK-- 160
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
+ YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 161 -DTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLE 219
Query: 241 NLYDHIADPVANN 253
NL H+ADP NN
Sbjct: 220 NLASHLADPWHNN 232
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 112/205 (54%), Gaps = 18/205 (8%)
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DRP +L P SE P +L G PGDYG+D L+A+P + E++H RWAMLGA G
Sbjct: 64 DRPLWL-PGSE-APKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGI 121
Query: 113 VFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE+L+K G+ W+KAG A F++ G L + +L WA +
Sbjct: 122 FIPELLTKIGI-LNTPSWYKAGDATYFADQG-------TLFIVELLLMAWAESRRWADIA 173
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG D+ E++ KE+KNGRLAM ++
Sbjct: 174 RPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAV 233
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G FVQA VT GPI+NL+ H+ADP
Sbjct: 234 LGAFVQANVTHVGPIDNLFAHLADP 258
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 123/251 (49%), Gaps = 19/251 (7%)
Query: 7 QQSAFAGQTALRQSNEFV-RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQT 65
Q++ FA +++ V R V + RR +++ +RP +
Sbjct: 27 QKTVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAV--QTERPLWFP--GTTP 82
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G P D+G+D GL +DPET N + E++H RWAMLGA G PE+L+K G+
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGI-L 141
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIGGGP 180
W+ AG Q + + L + I WA ++ G V I
Sbjct: 142 NTPSWYTAGEQEY------FTDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNN 195
Query: 181 LGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
G D YPGG FDPLG P++ EL+ KE+KNGRLAM ++ G + QA TG GP
Sbjct: 196 KLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGP 255
Query: 239 IENLYDHIADP 249
I+NL H+ADP
Sbjct: 256 IDNLLAHLADP 266
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P+YL G GDYG+D GL DPE+ + E++H+R+AMLG G + ++L G+
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLS- 72
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VWF+AGA + ++ LI Q +L +A M F+ EG G
Sbjct: 73 KIPVWFEAGAVKY-----EFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGL 127
Query: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
EGL+P YPGG +PLGLA D E K+KE+KNGRLAM ++ G FVQA VT G
Sbjct: 128 EASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVG 187
Query: 238 PIENLYDHIADP 249
PI+NL +H+++P
Sbjct: 188 PIDNLVEHLSNP 199
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 125/258 (48%), Gaps = 36/258 (13%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFV----RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKY 57
+ + FAG + +S F +GV +G R++M S + P +P+
Sbjct: 7 CSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSM---------SAEWMPGQPR- 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
P +L G PGD+G+D L PE + +E E+IH RWAML G + PE
Sbjct: 57 --------PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEA 108
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
L G W +A G YLG P + + I A + + + FVE R
Sbjct: 109 L-------GLGNWVEAQKWAAIPGNQATYLGAP--VPWGYLPVILAVEFLSIAFVESQR- 158
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT-G 235
G P E YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF VQA G
Sbjct: 159 NGEPDPEKRK--YPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 216
Query: 236 KGPIENLYDHIADPVANN 253
GP+ENL H++DP N
Sbjct: 217 TGPLENLATHLSDPWHKN 234
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 133/275 (48%), Gaps = 45/275 (16%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVAD-----GGRITMRRTVKSAPQ------SIWY 50
A+S++ + ++ Q VG A G +++R+T + P+ S
Sbjct: 10 ASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRRAAVTVSQAV 69
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
+RP + P +L G PGD+G+D GL +DPET + E++H RWAMLGA
Sbjct: 70 QTERPLWFP--GNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAA 127
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G PE+ +K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 128 GIFIPELCTKLGI-LNTPSWYTAGE-------LEYFTDKT--------TLFVVEMIFLGW 171
Query: 171 VEGYR---------IGGGPL-----GEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKEL 214
EG R + P+ G D YPGG FDPLG P++ EL+ KE+
Sbjct: 172 AEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 231
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
KNGRLAM ++ G + QA TG GPI+NL H+ADP
Sbjct: 232 KNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADP 266
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 115/226 (50%), Gaps = 38/226 (16%)
Query: 33 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
GR+TM + W+ P +P+ P++L G PGD+G+D GL PE F
Sbjct: 10 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLGTVPENFE 51
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNL 151
+ +E EV H RWAML G + PE L G W KA GG Y G P
Sbjct: 52 RFKESEVYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAAVPGGQATYFGVP-- 102
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAE 208
+ ++ I A + V + F E R DP YPGGAFDPLG + DP +F E
Sbjct: 103 VPWGNLPTILAIEFVAIAFAEHQRT------MEKDPEKKKYPGGAFDPLGFSKDPVKFEE 156
Query: 209 LKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 253
K+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP NN
Sbjct: 157 YKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNN 202
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 98/161 (60%), Gaps = 16/161 (9%)
Query: 106 MLGALGCVFPEILSKNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWA 162
ML ALG V PE+L G V F E VW+K G LDYLG P A Q ++ I
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 60
Query: 163 CQVVLMGFVEGYRIGGGPLGEGLDPL---------YPGG-AFDPLGLADDPDQFAELKVK 212
CQ +LM E R G E L+PL YPGG FDPLGL+ DP F +LKVK
Sbjct: 61 CQALLMVGPEYARYCGI---EALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVK 117
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
E+KNGRLAM + FGF++QA VTGKGP++NL +H++DP+ NN
Sbjct: 118 EIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNN 158
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 9 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL---- 64
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W +A GG YLGNP + ++ I A + + + FVE R
Sbjct: 65 ---GLGNWVQAQEWAAIPGGQATYLGNP--VPWGNLPTILAIEFLAIAFVEHQRSMEK-- 117
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIE 240
+ YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF V Q+ G GP+E
Sbjct: 118 -DTEKKKYPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLE 176
Query: 241 NLYDHIADPVANN 253
NL H+ADP NN
Sbjct: 177 NLASHLADPWHNN 189
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 116/225 (51%), Gaps = 34/225 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPE + E++H+RWAMLG G
Sbjct: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PE+L K G W++AG Q +Y +P ++ Q+ LMG+V
Sbjct: 110 ILIPELLEKMGY-VENYSWYEAGTQ-------EYFADPT--------TLFIVQLALMGWV 153
Query: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKELK 215
EG R P ++P YPGG FDP+ P+ L+ KE+K
Sbjct: 154 EGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIK 213
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
NGRLAM + GF+ QAI TG+GPIENL H+ADP N ++ T+
Sbjct: 214 NGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 112/205 (54%), Gaps = 18/205 (8%)
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DRP +L P SE P +L G PGDYG+D L+A+P + E++H RWAMLGA G
Sbjct: 13 DRPLWL-PGSE-APKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGI 70
Query: 113 VFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVV 166
PE+L+K G+ W+KAG A F++ G L + +L WA +
Sbjct: 71 FIPELLTKIGI-LNTPSWYKAGDATYFADQG-------TLFIVELLLMAWAESRRWADIA 122
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 224
G V I G D YPGG FDPLG D+ E++ KE+KNGRLAM ++
Sbjct: 123 RPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAV 182
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
G FVQA VT GPI+NL+ H+ADP
Sbjct: 183 LGAFVQANVTHVGPIDNLFAHLADP 207
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 125/258 (48%), Gaps = 36/258 (13%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFV----RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKY 57
+ + FAG + +S F +GV +G R++M S + P +P+
Sbjct: 7 CSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNGSRVSM---------SDEWMPGQPR- 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
P +L G PGD+G+D L PE + +E E+IH RWAML G + PE
Sbjct: 57 --------PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEA 108
Query: 118 LSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 176
L G W +A G YLG P + + I A + + + FVE R
Sbjct: 109 L-------GLGNWVEAQKWAAIPGNQATYLGAP--VPWGYLPVILAVEFLSIAFVESQR- 158
Query: 177 GGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT-G 235
G P E YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF VQA G
Sbjct: 159 NGEPDPEKRK--YPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 216
Query: 236 KGPIENLYDHIADPVANN 253
GP+ENL H++DP N
Sbjct: 217 TGPLENLATHLSDPWHKN 234
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 127/260 (48%), Gaps = 37/260 (14%)
Query: 7 QQSAFAGQTALRQSNEFV-RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQT 65
Q++ FA +++ V R V + RR +++ +RP +
Sbjct: 27 QKTVFANNVGAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAV--QTERPLWFP--GTTP 82
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G P D+G+D GL +DPET N + E++H RWAMLGA G PE+L+K G+
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGI-L 141
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGE 183
W+ AG L+Y + ++ +++ +G+ EG R P
Sbjct: 142 NTPSWYTAGE-------LEYFTDKT--------TLFVVEMIFLGWAEGRRWADIIKPGSV 186
Query: 184 GLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG FDPLG P++ EL+ KE+KNGRLAM ++ G +
Sbjct: 187 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWF 246
Query: 230 QAIVTGKGPIENLYDHIADP 249
QA TG GPI+NL H+ADP
Sbjct: 247 QAEYTGTGPIDNLLAHLADP 266
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 111/220 (50%), Gaps = 34/220 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
G RP +L P +L G PGD+G+D GL DP + + E++H R+AM G
Sbjct: 56 GTQRPTWLPGLDP--PPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVA 113
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G +F ++L +G VWF+AGA F + A++ Q++LMGF
Sbjct: 114 GILFTDLLRVSG-NSDLPVWFEAGAAKFEFA--------------NTTALFFVQLLLMGF 158
Query: 171 VEGYR----------------IGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKE 213
E R IG G P YPGG F+PLGLA D + E K+KE
Sbjct: 159 AETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKE 218
Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
+KNGRLAM +M GF VQA VT GPI+NL H++DP N
Sbjct: 219 IKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKN 258
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 124/256 (48%), Gaps = 36/256 (14%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQ 64
A+ + +TA + R V++G R+TM+ W P S+
Sbjct: 2 ALSMRTLSARTAAPRGFSGRRVAAVSNGSRVTMK-------AGNWL---------PGSD- 44
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
P++L + PG+YG+D L +P + + E EVIH RWAMLG G + E+L
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL------ 98
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W+ A + G + G ++LA + V M EG R G+
Sbjct: 99 -GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAF---EFVAMAAAEGQR------GDA 148
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 244
+YPGGAFDPLG A D + ELK+KE+KNGRLAM + GF Q TGKGPI L +
Sbjct: 149 GGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGE 208
Query: 245 HIADPVANNAWAYATN 260
H+A+P N +ATN
Sbjct: 209 HLANPWGAN---FATN 221
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GD+G+D GL DPE + E++H+R+AM G G + ++L G+
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGIS- 124
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
VW++AGA F + A++ Q++LMGFVE R
Sbjct: 125 NLPVWYEAGAVKFEFASTE--------------ALFIVQLILMGFVETKRYMDFTNPGSQ 170
Query: 176 ------IGGGPLGEGLDPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
G EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M G F
Sbjct: 171 AKEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVF 230
Query: 229 VQAIVTGKGPIENLYDHIADP 249
VQA VT GPIENL +H+++P
Sbjct: 231 VQASVTHAGPIENLVEHLSNP 251
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 14/192 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G GD+G+D GL DP++ + E++H+R+AM G G +F ++L G++
Sbjct: 67 PPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 125
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VW++AGA F ++ LI Q +L +A M FV EG G
Sbjct: 126 KLPVWYEAGAVKF-----EFASTRTLIVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGL 180
Query: 179 GPLGEGLDPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
EGL+P YPGG +PLGLA D + K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 181 ESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAG 240
Query: 238 PIENLYDHIADP 249
PI+NL +H+++P
Sbjct: 241 PIDNLIEHLSNP 252
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYL G PGD+G+D GL PE + +E E+IH+RWAML G + PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL------- 63
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W A + GG YLGNP + ++ I A + + + F E R G
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNP--VPWGTLPVILAVEFIAIAFAESQRNGES----- 116
Query: 185 LDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV-TGKGPIE 240
DP YPGGAFDP+G + + ELK+KE+KNGRLA+ + GF +QAI G GP+E
Sbjct: 117 -DPEKRKYPGGAFDPMGFSKGAN-LEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLE 174
Query: 241 NLYDHIADPVANN 253
NL H+ADP N
Sbjct: 175 NLKTHLADPWHNT 187
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D GL +PE + E++H R+AM G G +F ++L +G
Sbjct: 72 PPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSG-NS 130
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VWF+AGA F D+ L Q L +A M F EG IG
Sbjct: 131 DLPVWFEAGAAKF-----DFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGL 185
Query: 179 GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G P YPGG F+PLGLA D + + K+KE+KNGRLAM +M GF VQA VT G
Sbjct: 186 EAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAG 245
Query: 238 PIENLYDHIADPVANN 253
PI+NL H++DP N
Sbjct: 246 PIDNLLTHLSDPFNKN 261
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYL G PGD+G+D GL PE + +E E+IH+RWAML G + PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL------- 63
Query: 126 GEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W A + GG YLGNP + ++ I A + + + FVE R G
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNP--VPWGNLPIILAVEFIAIAFVESQRNGES----- 116
Query: 185 LDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV-TGKGPIE 240
DP YPGG FDPLG + + ELK+KE+KNGRLA+ + GF VQA+ G GP+E
Sbjct: 117 -DPEKRKYPGGPFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLE 174
Query: 241 NLYDHIADPVANN 253
NL H+ADP N
Sbjct: 175 NLKTHLADPWHNT 187
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 119/228 (52%), Gaps = 43/228 (18%)
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGAL 110
YL S+Q +YL G PGD+G+D G+S DPE F + L EVIH RWAMLG
Sbjct: 86 YLMGVSDQNMTYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVA 144
Query: 111 GCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
G V PE+L G+ + VWFK+GA I +G DY +P I W +VLM
Sbjct: 145 GVVAPEVLGGMGIIPADTGLVWFKSGA-IPPQGTFDYWADPTTI-------FW-VNMVLM 195
Query: 169 GFVEGYR---------IGGGPL--------GEGLDPLYPGGA---FDPLGLADDPDQFAE 208
F E R G PL G G P YPGG F LG D A+
Sbjct: 196 NFAEVKRGQDYWYPGSQGETPLMGWEKGFAGSGA-PAYPGGKYFNFANLGKTD----MAK 250
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA 256
++ KE+KNGRLAM + G VQA+ TG+GP +N+ DHI+DP ANN A
Sbjct: 251 MQKKEIKNGRLAMMAFLGIAVQAVATGEGPFKNIVDHISDPFANNMLA 298
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 107/205 (52%), Gaps = 32/205 (15%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D GL +PE + E++H R+AM G G +F ++L +G
Sbjct: 118 PPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSG-NS 176
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
VWF+AGA F D+ + A++ Q+ LMGF E R
Sbjct: 177 DLPVWFEAGAAKF-----DF---------ANTTALFFVQLFLMGFAETKRYMDFKNPGSQ 222
Query: 176 ------IGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFF 228
IG G P YPGG F+PLGLA D + + K+KE+KNGRLAM +M GF
Sbjct: 223 AEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFM 282
Query: 229 VQAIVTGKGPIENLYDHIADPVANN 253
VQA VT GPI+NL H++DP N
Sbjct: 283 VQASVTHAGPIDNLLTHLSDPFNKN 307
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D GL +PE + E++H R+AM G G +F ++L +G
Sbjct: 72 PPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLLRVSG-NS 130
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VWF+AGA F D+ L Q L +A M F EG IG
Sbjct: 131 DLPVWFEAGAAKF-----DFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGL 185
Query: 179 GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G P YPGG F+PLGLA D + + K+KE+KNGRLAM +M GF VQA VT G
Sbjct: 186 EAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAG 245
Query: 238 PIENLYDHIADPVANN 253
PI+NL H++DP N
Sbjct: 246 PIDNLLTHLSDPFNKN 261
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 107/200 (53%), Gaps = 17/200 (8%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
TP+YL G PG +G+D GL + P + +E E++HSRWAM G G + E+L
Sbjct: 41 SDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELL---- 95
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG 182
G+ W++A + G YLG P + ++LAI + V + E R P
Sbjct: 96 ---GQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAI---EFVAIAGAEAQR-NAEPDA 148
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
E YPGGAFDPLG + D E K+KELKNGRLAM + GF Q TGKGP+E L
Sbjct: 149 EKRK--YPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAATGKGPLEAL 206
Query: 243 YDHIADPVANNAWAYATNFV 262
H+ADP N +ATN V
Sbjct: 207 KLHLADPWGAN---FATNGV 223
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 104/200 (52%), Gaps = 19/200 (9%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
P++L + PG+YG+D L DP + + E EVIH RWAMLG G + E+L
Sbjct: 43 SDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELL---- 98
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG 182
G W+ A + G + G ++LA + V M EG R G +
Sbjct: 99 ---GYGNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAF---EFVAMAAAEGQRNDAGGV- 151
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
+YPGGAFDPLG A D + ELK+KE+KNGRLAM + GF Q TGKGP+ L
Sbjct: 152 -----IYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAATGKGPLAAL 206
Query: 243 YDHIADPVANNAWAYATNFV 262
+H+A+P N +ATN V
Sbjct: 207 GEHLANPWGAN---FATNGV 223
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 120/218 (55%), Gaps = 35/218 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGDYG+D GL DPE F + L E+I+ R+AMLGA G + P
Sbjct: 28 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 86
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
E+L + G+ E WF++G I G Y +P ++ ++ LMGF E
Sbjct: 87 EVLGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADP--------YTLFVLEMALMGFAEH 137
Query: 174 YRIGG----GPLGE----GLD--------PLYPGGA-FDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL+ P YPGG F+ LG + + ELKVKE+KN
Sbjct: 138 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKN 197
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
GRLAM ++ G+F QAI TG GP +NL DH+ADPV NN
Sbjct: 198 GRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNV 235
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 120/218 (55%), Gaps = 35/218 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGDYG+D GL DPE F + L E+I+ R+AMLGA G + P
Sbjct: 10 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 68
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
E+L + G+ E WF++G I G Y +P ++ ++ LMGF E
Sbjct: 69 EVLGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADP--------YTLFVLEMALMGFAEH 119
Query: 174 YRIGG----GPLGE----GLD--------PLYPGG-AFDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL+ P YPGG F+ LG + + ELKVKE+KN
Sbjct: 120 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKN 179
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
GRLAM ++ G+F QAI TG GP +NL DH+ADPV NN
Sbjct: 180 GRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNV 217
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 120/218 (55%), Gaps = 35/218 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGDYG+D GL DPE F + L E+I+ R+AMLGA G + P
Sbjct: 10 SKQSLSYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAP 68
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
E+L + G+ E WF++G I G Y +P ++ ++ LMGF E
Sbjct: 69 EVLGRIGLIPQETAIPWFQSGV-IPPVGNYSYWADP--------YTLFVLEMALMGFAEH 119
Query: 174 YRIGG----GPLGE----GLD--------PLYPGG-AFDPLGLADDPDQFAELKVKELKN 216
R G +G+ GL+ P YPGG F+ LG + + ELKVKE+KN
Sbjct: 120 RRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKN 179
Query: 217 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA 254
GRLAM ++ G+F QAI TG GP +NL DH+ADPV NN
Sbjct: 180 GRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNV 217
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 41/244 (16%)
Query: 28 GVADGGRITMRRTVKSAPQSIWY----GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 83
G GR+ +R+ S+ ++ + PDRP + P +L G PGD+G+D G
Sbjct: 29 GAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFP--GSTPPPWLDGSLPGDFGFDPLG 86
Query: 84 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGG 142
L +DPE+ N + +++H RWAMLGA G PE L+K G+ W+ AG Q F++
Sbjct: 87 LGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSWYTAGEHQYFTD-- 143
Query: 143 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL---DPLYP--------- 190
++ +++L+G+ EG R + G DP++P
Sbjct: 144 --------------TTTLFIIELILIGWAEGRRWADIIINPGCVNTDPIFPQQQVHGHRR 189
Query: 191 ----GGAFDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245
G DPLG P++ EL+ KE+KNGR+AM ++ G + QA TG GPI+N + H
Sbjct: 190 GEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAH 249
Query: 246 IADP 249
+ADP
Sbjct: 250 VADP 253
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 121/243 (49%), Gaps = 36/243 (14%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
R+ + V S + + PDRP + P +L G PGD+G+D GL +DPE+
Sbjct: 38 RVNATKGVSSVCEPL--PPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPESLKW 93
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH RWAML A G + PE L + G WF AG + +Y +P
Sbjct: 94 FAQAELIHGRWAMLAAAGILIPEWLERLGF-IDNFNWFDAGTR-------EYFADPT--- 142
Query: 154 AQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL------------YPGGA-FDPLG 198
++ Q++LMG++EG R P +DP YPGG FDP
Sbjct: 143 -----TLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWN 197
Query: 199 LAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAY 257
P+ ++ KE+KNGRLAM + GF+ QAI TG+GPI+NL HIADP N ++
Sbjct: 198 WGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSA 257
Query: 258 ATN 260
T+
Sbjct: 258 FTS 260
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 121/243 (49%), Gaps = 36/243 (14%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
R+ + V S + + PDRP + P +L G PGD+G+D GL +DPE+
Sbjct: 38 RVNATKGVSSVCEPL--PPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPESLKW 93
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+ E+IH RWAML A G + PE L + G WF AG + +Y +P
Sbjct: 94 FAQAELIHGRWAMLAAAGILIPEWLERLGF-IDNFNWFDAGTR-------EYFADPT--- 142
Query: 154 AQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL------------YPGGA-FDPLG 198
++ Q++LMG++EG R P +DP YPGG FDP
Sbjct: 143 -----TLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWN 197
Query: 199 LAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAY 257
P+ ++ KE+KNGRLAM + GF+ QAI TG+GPI+NL HIADP N ++
Sbjct: 198 WGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSA 257
Query: 258 ATN 260
T+
Sbjct: 258 FTS 260
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G PGD+G+D GL PE F + +E EV H RWAML G + PE L
Sbjct: 54 QPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEAL---- 109
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG Y G P + ++ I A + + + F E R
Sbjct: 110 ---GLGNWVKAQEWAAVPGGQATYFGVP--VPWGNLPTILAIEFLAIAFAEHQRT----- 159
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP + E K+KE+KNGRLAM + GF V Q+ G G
Sbjct: 160 -MEKDPEKKKYPGGAFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 218
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 219 PLENLASHLADPWHNN 234
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 131/280 (46%), Gaps = 50/280 (17%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MAT QQ + L Q + VR VA R ++R +A + ++ P
Sbjct: 1 MATIIAQQLS----AGLTQRSRTVRPRSVASKARASVRVGAVAAARPNFFPGTTP----- 51
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P +L G PGDYG+D GL D ++ E+ H+RWAMLG G PE++
Sbjct: 52 -----PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQN 106
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR----I 176
V+ W +A +G Y+ +PN ++ Q+ +M + E R
Sbjct: 107 PFVEGAMPNWAEAP---LWDG---YMASPN--------TLFVVQMFMMNWAEVRRWQDMK 152
Query: 177 GGGPLGEGLDPL-------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 223
G + E DPL YP G FDP+G+A DP++ LKVKE+ NGRLAM +
Sbjct: 153 NPGTMNE--DPLTGANKGDTNTDVGYPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVA 210
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
+ G +Q TG GPI NL H+ADP N + TNFVP
Sbjct: 211 VMGCIIQNEATGVGPIANLKAHLADPAHNTIF---TNFVP 247
>gi|169261110|gb|ACA52203.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera elata subsp. hookeri]
Length = 103
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 74/106 (69%), Gaps = 7/106 (6%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRR-TVKSA---PQSIWYGPDRPK 56
MAT + S F G+ L E R D GR+TMR+ T K A S WYGPDR K
Sbjct: 1 MATVTLS-STFTGKAVLSTPKE--RTAAGLDNGRVTMRKATPKKAAATSSSPWYGPDRVK 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS
Sbjct: 58 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 123/227 (54%), Gaps = 41/227 (18%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPE-------TFAKNRELEVIHSRWAMLGALGCVF 114
S+Q+ SYLTG P DYG+D GL DPE + A + EVIH+RWAMLGA GC+
Sbjct: 29 SDQSLSYLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIA 87
Query: 115 PEILSKNGV---KFGEAVWFKAGAQIFSEGGLD-YLGNPNLIHAQSILAIWACQVVLMGF 170
PEIL+ GV E +WFK+G I G D Y +P +++ +V+L+ F
Sbjct: 88 PEILATAGVIPQTPDEVIWFKSGV-IPPAGVYDKYWLDP--------YSLFFIEVILVQF 138
Query: 171 VE---------------GYRIGGGPLGEGL-DPLYPGGAFDPLGLADDPDQFAELKVKEL 214
E Y +G + +G DP YPGG F L D ELK KEL
Sbjct: 139 AELRRWQDFRNPGSQGKQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGKSD-LKELKTKEL 197
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KNGRLAM ++FG+ QA++T +GP +NL DH++DP +N TNF
Sbjct: 198 KNGRLAMLAVFGYGAQAVITAEGPFKNLTDHLSDPTGHNI---LTNF 241
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 128/264 (48%), Gaps = 42/264 (15%)
Query: 21 NEFVRKVGVADGGRITM---RRTVKSAPQSIW-----YGPDRPKYLGPFSEQTPSYLTGE 72
N +R+ G D + RRTV A + + PDRP + P +L G
Sbjct: 15 NREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWFP--GSSPPEWLDGS 72
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
PGD+G+D GL +DPE + E++H+RWAML G + PE+L K G W+
Sbjct: 73 LPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEKIGY-IENFSWYD 131
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL-- 188
AGA+ +Y +P ++ Q+ LMG+VEG R P ++P
Sbjct: 132 AGAR-------EYFVDPT--------TLFVVQMGLMGWVEGRRWADMVNPGSVDIEPKVP 176
Query: 189 ----------YPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
YPGG FDP+ P+ L+ KE+KNGRLAM + GF+ QAI TG+
Sbjct: 177 HITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGE 236
Query: 237 GPIENLYDHIADPVANNAWAYATN 260
GPIENL H+ADP N ++ T
Sbjct: 237 GPIENLMAHLADPGHCNIFSAFTR 260
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 124/257 (48%), Gaps = 35/257 (13%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRK---VGVADGGRITMRRTVKSAPQSIWYGPDRPKYL 58
+ A+ AFAG + +S F VG G R++M S + P +P+
Sbjct: 7 CSPAVAPVAFAGAFSSAKSRFFSPTSSLVGRRHGSRVSM---------SAEWMPGQPR-- 55
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
P +L G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 56 -------PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL 108
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIG 177
G W +A G Y G P + + + A + + + FVE R
Sbjct: 109 -------GLGNWVEAQKWAAIPGSQATYFGVP--VPWGYLPIVLAVEFLAIAFVESQR-N 158
Query: 178 GGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT-GK 236
G P E YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF VQA G
Sbjct: 159 GEPDPEKRK--YPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGT 216
Query: 237 GPIENLYDHIADPVANN 253
GP+ENL H++DP N
Sbjct: 217 GPLENLATHLSDPWHRN 233
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 141/287 (49%), Gaps = 51/287 (17%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
M + Q+AF+G+ A R V A+ I TV + ++ G
Sbjct: 2 MLLNRSAQAAFSGKAARPAQANRARLVCRAEEKSIA---TVDRSKDQLYVGA-------- 50
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVF 114
S+ + +YL G PGD+G+D GL DP F + + L EVIH RWAMLGA GC+
Sbjct: 51 -SQSSLAYLDGTLPGDFGFDPLGL-LDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIA 108
Query: 115 PEILSKNGV--KFGEAVWFKAGAQIFSEGGLD-YLGNPNLIHAQSILAIWACQVVLMGFV 171
PEIL G+ + VW+++G I G D Y +P I+ ++V M F
Sbjct: 109 PEILGAAGLIPEKTNIVWYESGV-IPPAGSYDGYWADP--------YTIFFIEIVAMQFA 159
Query: 172 EGYRIGG----GPLGE----GL--------DPLYPGGAF-DPLGLADDPDQFAELKVKEL 214
E R+ G +G+ GL DP YPGG F + L ELK+KE+
Sbjct: 160 ELRRLQDFRYPGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEI 219
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
KNGRLAM +M G+ QA +T +GP +NL DH+ADPV NN TNF
Sbjct: 220 KNGRLAMLAMLGYGAQATLTREGPFQNLLDHLADPVNNNIL---TNF 263
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 136/270 (50%), Gaps = 42/270 (15%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA S I Q AG + RQ+ VR ++A + +W+ + P
Sbjct: 1 MALSMIAQRR-AGAFSARQAPRAVR---------------AQAAVRPVWFPGNPP----- 39
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P++L G GDYG+D L +P+T + E++H R+AMLGA G + I +K
Sbjct: 40 -----PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAK 94
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE-GYRIGGG 179
G+ F E W+ AG + + +D+ P L+ Q L WA F G + G
Sbjct: 95 VGLGFPE--WYDAGKVVVEKNNIDF---PTLMVIQFYLMGWAETKRWYDFKNPGSQADGS 149
Query: 180 PLG-----EGLDPLYPGGAF-DPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
LG +GL+ YPGG F DP+GL+ D ++ E K KE+KNGRLAM + GF Q
Sbjct: 150 FLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYA 209
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFV 262
TGKGP++NL DH+ADP N +ATN V
Sbjct: 210 ATGKGPLDNLADHLADP---NHVNFATNGV 236
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 135/270 (50%), Gaps = 42/270 (15%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA S I Q AG + RQ+ VR ++ + +W+ P P
Sbjct: 1 MALSMIAQRR-AGAFSARQAPRAVR---------------AQALTRPVWF-PGNP----- 38
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P++L G GDYG+D L + ET + E++H R+AMLGA G + I +K
Sbjct: 39 ----APAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELVHGRFAMLGAAGIILTSIGAK 94
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE-GYRIGGG 179
G+ F E W+ AG + + +D+ P LI Q L WA F G + G
Sbjct: 95 VGLGFPE--WYDAGKVVVEKNNIDF---PTLIVIQFYLMGWAETKRWYDFKNPGSQADGS 149
Query: 180 PLG-----EGLDPLYPGGAF-DPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
LG +GL+ YPGG F DP+GL+ D ++AE K KE+KNGRLAM + GF Q
Sbjct: 150 FLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYA 209
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFV 262
TGKGP++NL DH+ADP N +ATN V
Sbjct: 210 ATGKGPLDNLSDHLADP---NHINFATNGV 236
>gi|302142798|emb|CBI20093.3| unnamed protein product [Vitis vinifera]
Length = 84
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 75/125 (60%), Gaps = 48/125 (38%)
Query: 141 GGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLA 200
GGLDYLGNPNL GYRIGGGPLGE
Sbjct: 8 GGLDYLGNPNL---------------------GYRIGGGPLGE----------------- 29
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATN
Sbjct: 30 ----------VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATN 79
Query: 261 FVPGK 265
FVPGK
Sbjct: 80 FVPGK 84
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 136/270 (50%), Gaps = 42/270 (15%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MA S I Q AG + RQ+ VR ++A + +W+ + P
Sbjct: 1 MALSMIAQRR-AGAFSARQAPRAVR---------------AQAAVRPVWFPGNPP----- 39
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
P++L G GDYG+D L +P+T + E++H R+AMLGA G + I +K
Sbjct: 40 -----PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAK 94
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVE-GYRIGGG 179
G+ F E W+ AG + + +D+ P L+ Q L WA F G + G
Sbjct: 95 VGLGFPE--WYDAGKVVVEKNNIDF---PTLMVIQFYLMGWAETKRWYDFKNPGSQADGS 149
Query: 180 PLG-----EGLDPLYPGGAF-DPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
LG +GL+ YPGG F DP+GL+ D ++ E K KE+KNGRLAM + GF Q
Sbjct: 150 FLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYA 209
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATNFV 262
TGKGP++NL DH+ADP N +ATN V
Sbjct: 210 ATGKGPLDNLADHLADP---NHVNFATNGV 236
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 117/236 (49%), Gaps = 36/236 (15%)
Query: 25 RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
R V++G R+TM+ W P S+ P++L + PG+YG+D L
Sbjct: 18 RVAAVSNGSRVTMK-------AGNWL---------PGSD-APAWLPDDLPGNYGFDPLSL 60
Query: 85 SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLD 144
+P + + E EVIH RWAMLG G + E+L G W+ A + G
Sbjct: 61 GKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL-------GYGNWYDAPLWAVNGGKAT 113
Query: 145 YLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPD 204
+ G ++LA + V M EG R G+ +YPGGAFDPLG A D
Sbjct: 114 WFGIEVPFDLNALLAF---EFVAMAAAEGQR------GDAGGVVYPGGAFDPLGFAKDSS 164
Query: 205 QFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
+ ELK+KE+KNGRLAM + GF Q TGKGPI L +H+A+P N +ATN
Sbjct: 165 KSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLANPWGAN---FATN 217
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P YL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 52 QPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA GG YLG P + ++ I + + + FVE R
Sbjct: 108 ---GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILVIEFLAIAFVEHQR------ 156
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + G V Q+ G G
Sbjct: 157 SMEKDPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYPGTG 216
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 217 PLENLATHLADPWHNN 232
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 143/289 (49%), Gaps = 55/289 (19%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPK---Y 57
M + Q+AF+G+ A + A+ R+ R KS + DR K Y
Sbjct: 1 MMLTKSAQAAFSGKVA---------RPAKANRARLVCRAEEKSIAKV-----DRSKDQLY 46
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALG 111
+G S+ + +YL G PGD+G+D GL DP F + + L EVIH+RWAMLGA G
Sbjct: 47 VGA-SQSSLAYLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAG 104
Query: 112 CVFPEILSKNGV--KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
C+ PE+L G+ WF++G + Y +P I+ ++V M
Sbjct: 105 CIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADP--------YTIFFVEIVAMQ 156
Query: 170 FVEGYRIGG----GPLGE----GL--------DPLYPGGAF-DPLGLADDPDQFAELKVK 212
F E R+ G +G+ GL D YPGG F + L ELK+K
Sbjct: 157 FAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLK 216
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
E+KNGRLAM +M G+ QA++TGKGP +NL +H+ADPV NN TNF
Sbjct: 217 EIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNN---ILTNF 262
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 143/289 (49%), Gaps = 55/289 (19%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPK---Y 57
M + Q+AF+G+ A + A+ R+ R KS + DR K Y
Sbjct: 1 MMLTKSAQAAFSGKVA---------RPAKANRARLVCRAEEKSIAKV-----DRSKDQLY 46
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALG 111
+G S+ + +YL G PGD+G+D GL DP F + + L EVIH+RWAMLGA G
Sbjct: 47 VGA-SQSSLAYLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAG 104
Query: 112 CVFPEILSKNGV--KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
C+ PE+L G+ WF++G + Y +P I+ ++V M
Sbjct: 105 CIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYNGYWADP--------YTIFFVEIVAMQ 156
Query: 170 FVEGYRIGG----GPLGE----GL--------DPLYPGGAF-DPLGLADDPDQFAELKVK 212
F E R+ G +G+ GL D YPGG F + L ELK+K
Sbjct: 157 FAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLK 216
Query: 213 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
E+KNGRLAM +M G+ QA++TGKGP +NL +H+ADPV NN TNF
Sbjct: 217 EIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNIL---TNF 262
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 127/243 (52%), Gaps = 40/243 (16%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKN 94
+ VK+ P+S YL S+Q +YL G PGD+G+D G+S DPE F
Sbjct: 49 KAVVKAQPRS-----KDDLYLMGVSDQNMAYLDGTLPGDFGFDPLGMS-DPEGAGGFVNP 102
Query: 95 REL---EVIHSRWAMLGALGCVFPEILSKNGV--KFGEAVWFKAGAQIFSEGGLDYLGNP 149
+ L EVIH RWAMLG G V PEIL + G+ + VWF +GA I +G DY NP
Sbjct: 103 QWLAYSEVIHGRWAMLGVAGIVAPEILGQAGLIPESTGLVWFTSGA-IPPQGTFDYWANP 161
Query: 150 NLIHAQSILAIWACQVV---------------LMGFVEGYRIGGGPLGEGLDPLYPGGA- 193
I ++ + ++ LMG+ +G+ G +P YPGG
Sbjct: 162 MTIFWVNMCMMNFAEIKRGQDYWYPGSQAEQPLMGWEKGFAGSG-------NPAYPGGKY 214
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
F+ GL D A+++ KE+KNGRLAM + G VQA+VTG+GP +N+ DH+ADP N
Sbjct: 215 FNFAGLGKD--DMAKMQKKEIKNGRLAMMAFLGCMVQAVVTGEGPWKNICDHVADPFGAN 272
Query: 254 AWA 256
A
Sbjct: 273 MLA 275
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 119/244 (48%), Gaps = 34/244 (13%)
Query: 33 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
GR+ + T + PDRP + P +L G PGD+G+D GL +DPE
Sbjct: 3 GRVRLNATKGVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLR 60
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
+ E++HSRWAML G + PE L + G W+ AGAQ ++ +P
Sbjct: 61 WFAQAELMHSRWAMLAVAGILIPECLERLGF-IENFSWYDAGAQ-------EFFADPT-- 110
Query: 153 HAQSILAIWACQVVLMGFVEGYR----IGGGPLGEGL----------DPLYPGGA-FDPL 197
++ Q+ LMG+VEG R I G + L D YPGG FDP
Sbjct: 111 ------TLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPF 164
Query: 198 GLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA 256
P+ L+ KE+KNGRLAM + GF QAI TG+GPIENL HIADP N ++
Sbjct: 165 MWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFS 224
Query: 257 YATN 260
T+
Sbjct: 225 AFTS 228
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 135/274 (49%), Gaps = 45/274 (16%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
+AI+ + FA + A R N VR ++T + + P Y+ SE
Sbjct: 6 NAIKITPFAKRQARR--NVSVRAEEAEAAPAPVAKKTRNTEDLA-------PLYVLGNSE 56
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEI 117
Q+ SYL G PGDYG+D GLS DPE F + L E+IH RWAMLG G V PE+
Sbjct: 57 QSLSYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEV 115
Query: 118 LSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
L G+ E VWFKAG I ++G DY +P I+ LM E R
Sbjct: 116 LGGMGIIPQETGLVWFKAG-MIPAQGTYDYWASP--------FTIFWINAFLMNIAELRR 166
Query: 176 I----GGGPLGE----GL--------DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRL 219
G +G+ GL DP YPGG F+ + + A +K KE+KNGRL
Sbjct: 167 AQDYWNPGSMGKQDFAGLEKMLGGSGDPAYPGGFFNFMKQGEK--DMAAMKTKEIKNGRL 224
Query: 220 AMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
AM + FG QA +TG+GP++NL DH+ DP +N
Sbjct: 225 AMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHN 258
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 125/258 (48%), Gaps = 31/258 (12%)
Query: 6 IQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQT 65
+++ A + A+ + E + V A R+ +R A ++ W P SE
Sbjct: 3 LERPLHASRAAILRHLELLLTVSAARSARVVVR-----AERASWL---------PGSE-I 47
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
PSYL GE PGD+G+D L DP ++ E+ + RWAML A G +F ++L G
Sbjct: 48 PSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGAGG 107
Query: 126 GEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP--- 180
A WFKA + + L + +L W V+ P
Sbjct: 108 PAAATPWFKASDFTY------FAPTSTLFIVELLLFAWVEVRRYQDMVKPGSTNQDPIFS 161
Query: 181 ---LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
L G +P YPGG FDPLG + AELK+KE+KN RLAM ++ GFFVQA TGK
Sbjct: 162 QYSLPSGNEPGYPGGIFDPLGYSKG--NMAELKLKEIKNARLAMLAVLGFFVQAKTTGKT 219
Query: 238 PIENLYDHIADPVANNAW 255
P+++L H+ADP +NN +
Sbjct: 220 PLDSLSSHLADPWSNNVF 237
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 14/108 (12%)
Query: 3 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-------SIWYGPDRP 55
+S + S+F G+ A++ S E V G++TMR+T Q S WYGPDR
Sbjct: 9 SSTMSVSSFMGK-AVKLSPE------VLGTGKVTMRKTAGKTKQTKSASSGSPWYGPDRV 61
Query: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR
Sbjct: 62 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 109
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 105/196 (53%), Gaps = 14/196 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G PGD+G+D GL +P + E++H R+AM G G + +++ +G+
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGIN- 122
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VWF+AGA F D+ L Q +L +A M F+ EG +G
Sbjct: 123 NLPVWFEAGATKF-----DFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGI 177
Query: 179 GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G P YPGG F+PLGLA D + E K+KE+KNGRLAM +M GF VQA VT G
Sbjct: 178 EAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVG 237
Query: 238 PIENLYDHIADPVANN 253
PI+NL H++DP N
Sbjct: 238 PIDNLLTHLSDPFNKN 253
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 32/200 (16%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G PGD+G+D GL ++PE + E++H RWAMLGA G PE+L+K G+
Sbjct: 71 PEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIGI-L 129
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGE 183
W+ AG Q + Q+ L I +++ MG+ EG R P
Sbjct: 130 NTPSWYTAGEQTY-------------FADQTTLFI--VELLFMGWAEGRRWADILKPGSV 174
Query: 184 GLDPL------------YPGGA-FDPLGL-ADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG FDPLG A + EL+ KE+KNGRLAM ++ G +
Sbjct: 175 NTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAWF 234
Query: 230 QAIVTGKGPIENLYDHIADP 249
QA+ TG GPI+NL+ H+ADP
Sbjct: 235 QAVYTGTGPIDNLFAHLADP 254
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 35/208 (16%)
Query: 72 EFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKF 125
PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PEI K G+
Sbjct: 5 RLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIP 63
Query: 126 GEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGG 179
E WFK G I G +Y + ++ + LMGF E R+ G
Sbjct: 64 PETALPWFKTGV-IPPAGTYNYWADS--------YTLFVFNMALMGFAEHRRLQDWYNPG 114
Query: 180 PLGE----GL--------DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
+G+ GL DP YPGG F+PLG + ELK+KE+KNGRLAM ++ G
Sbjct: 115 SMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILG 174
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNA 254
+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 175 YFIQGLVTGVGPFQNLLDHLADPVNNNV 202
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 115/229 (50%), Gaps = 33/229 (14%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS-YLTGEFPGDYGWDTAGLSADPETFAKN 94
T R + +S S G +RP + + + P+ +L G PGD+G+D LSADPE
Sbjct: 21 TTRASRRSVVVSAEAGAERPVW---YPGKAPAPHLDGSLPGDFGFDPLSLSADPEMRKWM 77
Query: 95 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIH 153
+ E+ H+RWAMLG G V PE+L+K GV W AG Q ++ G L
Sbjct: 78 VQAELQHARWAMLGVAGAVAPELLTKIGVA-DLPNWVDAGTYQYWAPAG-------PLFF 129
Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL-------------YPGGAFDPLGLA 200
Q + WA V ++ P DPL YPGG FD LG A
Sbjct: 130 IQMAMFNWAE-------VRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYA 182
Query: 201 DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
DP + ELK+KE+KNGRLAM + G Q + TG+GP+ENL+ HIA P
Sbjct: 183 KDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQTGQGPVENLFSHIASP 231
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 120/218 (55%), Gaps = 36/218 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ SYL G PGD+G+D GLS DPE F + R L EV + R AM+G +G V P
Sbjct: 54 SKQSLSYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVAP 112
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
E+L K G+ E WF+ G I G Y +P ++ ++ L+GF E
Sbjct: 113 ELLGKLGLVPAETAIPWFQTGV-IPPAGTYTYWADP--------YTLFVFELALVGFAEH 163
Query: 174 YRIGG----GPLGE----GLD--------PLYPGGA-FDPLGLADDPD-QFAELKVKELK 215
R G +G+ GL+ P YPGG F+PLG + + ELK+KE+K
Sbjct: 164 RRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIK 223
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + GF VQA+ TG GP++NL DH+ADPV NN
Sbjct: 224 NGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNN 261
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 128/264 (48%), Gaps = 42/264 (15%)
Query: 21 NEFVRKVGVADGGRITM---RRTVKSAPQSIW-----YGPDRPKYLGPFSEQTPSYLTGE 72
N +R+ G + + RRT+ +A + + PDRP + P +L G
Sbjct: 15 NREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFP--GSSPPEWLDGS 72
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
PGD+G+D GL +DPE + E++HSRWAML G + PE+L + G W+
Sbjct: 73 LPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLERIGY-IENFSWYD 131
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL-- 188
AG + +Y +P ++ Q+ LMG+VEG R P ++P
Sbjct: 132 AGTR-------EYFVDPT--------TLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVP 176
Query: 189 ----------YPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
YPGG FDP+ P+ L+ KE+KNGRLAM + GF+ QAI TG+
Sbjct: 177 HVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGE 236
Query: 237 GPIENLYDHIADPVANNAWAYATN 260
GPIENL H+ADP N ++ T
Sbjct: 237 GPIENLMAHLADPGHCNIFSAFTR 260
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 104/196 (53%), Gaps = 14/196 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G PGD+G+D GL +P + E++H R+AM G G + + + +G+
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGIN- 122
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV-------EGYRIGG 178
VWF+AGA F D+ L Q +L +A M F+ EG +G
Sbjct: 123 NLPVWFEAGATKF-----DFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEEGTFLGI 177
Query: 179 GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
G P YPGG F+PLGLA D + E K+KE+KNGRLAM +M GF VQA VT G
Sbjct: 178 EAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVG 237
Query: 238 PIENLYDHIADPVANN 253
PI+NL H++DP N
Sbjct: 238 PIDNLLTHLSDPFNKN 253
>gi|323388125|gb|ADX60322.1| chlorophyll a-b binding protein of LHCII [Furcellaria lumbricalis]
Length = 86
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 66/79 (83%)
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
EGLDPLYPG AFDPLGLADDPD FAELK KE+KNGRLA FSMFG+FVQA+ TGKGP++N
Sbjct: 1 EGLDPLYPGEAFDPLGLADDPDTFAELKTKEIKNGRLAQFSMFGYFVQALQTGKGPVQNW 60
Query: 243 YDHIADPVANNAWAYATNF 261
+H+ADP N + YAT F
Sbjct: 61 SEHVADPWNVNGFNYATKF 79
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 35/208 (16%)
Query: 72 EFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKF 125
PGDYG+D GLS DPE F + R L E+I+ R+AMLGA G + PEIL K G+
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 126 GEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGG 179
E WF+ G I G Y + ++ ++ LMGF E R+ G
Sbjct: 73 AETALPWFQTGV-IPPAGTYTYWADN--------YTLFVLEMALMGFAEHRRLQDWYNPG 123
Query: 180 PLGE----GLD--------PLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
+G+ GL+ P YPGG F +PLG D ELK+KE+KNGRLAM ++ G
Sbjct: 124 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 183
Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNA 254
+F+Q +VTG GP +NL DH+ADPV NN
Sbjct: 184 YFIQGLVTGVGPYQNLLDHLADPVNNNV 211
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 103/198 (52%), Gaps = 19/198 (9%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
P++L + PG+YG+D L DP + + E EVIH RWAMLG G + E+L
Sbjct: 7 SDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELL---- 62
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG 182
G W+ A + G + G ++LA + V M EG R G
Sbjct: 63 ---GYGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAF---EFVAMAAAEGQR------G 110
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
+ +YPGGAFDPLG A D + ELK+KE+KNGRLAM + GF Q TGKGPI L
Sbjct: 111 DAGGVVYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAATGKGPIAAL 170
Query: 243 YDHIADPVANNAWAYATN 260
+H+++P N +ATN
Sbjct: 171 GEHLSNPWGAN---FATN 185
>gi|169261112|gb|ACA52204.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera grandiflora]
Length = 103
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 77/106 (72%), Gaps = 7/106 (6%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRR-TVKSA---PQSIWYGPDRPK 56
MAT + S F G+ L E ++ G+ +G R+TMR+ T K A S WYGPDR K
Sbjct: 1 MATVTLS-STFTGKAVLSTPKE-LKAAGLGNG-RVTMRKATPKKAAATSSSPWYGPDRVK 57
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS
Sbjct: 58 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 124/253 (49%), Gaps = 46/253 (18%)
Query: 7 QQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVK-SAPQS---IWYGPDRPKYLGPF 61
Q A A + R QS V G G +R+ + SAP+ +W+ P
Sbjct: 113 QSIALAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGSAPEEERLVWFPNATP------ 166
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P +LTGEFPGD G+D GLS DP F + R EV H R AMLG +GC+ PE+
Sbjct: 167 ----PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELF--- 219
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL-MGFVEGYRIGGGP 180
F + WF L + NL L + A QV+ + + G R
Sbjct: 220 ---FSQGPWFD-------------LSSFNLTR----LGLVALQVIAPLEYWRGNRGFSWN 259
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
+G D YPG FDPL L D+ E K+KE+KNGRLAM +M G VQ+ +TGK P+
Sbjct: 260 GDDGPDQSYPG--FDPLRLTDE-----ETKLKEIKNGRLAMTAMLGLEVQSHITGKSPLV 312
Query: 241 NLYDHIADPVANN 253
NL +H+++P + N
Sbjct: 313 NLSEHLSNPASVN 325
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 104/191 (54%), Gaps = 35/191 (18%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YLTGE GD G+D AGL+ADP TF + + EV H R +ML +GC+ PE+L
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------- 780
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL---G 182
G WF QI+ + +D+ + A+ A QVV +E +R GG L
Sbjct: 781 GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDE 822
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
E +D YPG FDPL L + K E+KNGRLAM MFG VQ+ VTGK PI NL
Sbjct: 823 ETIDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNL 875
Query: 243 YDHIADPVANN 253
DH++ P+ N
Sbjct: 876 IDHLSHPLTAN 886
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 56/257 (21%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVAD----GGRITM-----RRTVKSAPQSIWYGPDRPKYL 58
QS G++ L +E + + GG + M R++ KS + +W+ P L
Sbjct: 302 QSHITGKSPLVNLSEHLSNPASVNILTGGGSVAMFAGSGRKSQKSDERPLWF----PNTL 357
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
P S+LTGE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L
Sbjct: 358 AP------SWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPDYL 411
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
G+ +W++A N +AI+ + G +
Sbjct: 412 -------GKGIWYEAAQ--------------NAGIGLKEVAIFTAAYGVFEVARGVK--- 447
Query: 179 GPLGEGLDP--LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
E DP +YPG FDPL L D K E+KNGRLA+ ++ GF VQ V G
Sbjct: 448 ----ENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGG 496
Query: 237 GPIENLYDHIADPVANN 253
P+ NL DH+ P+ +N
Sbjct: 497 SPLANLADHLQQPLQHN 513
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 37/200 (18%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L
Sbjct: 542 EPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL----- 596
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
G+ WF+AG + L + + + E +R GG +
Sbjct: 597 --GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 636
Query: 184 --GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
LD YPG FDPL L D + E+KNGRLA+ ++ G Q + TG+ P+ N
Sbjct: 637 KGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLAN 689
Query: 242 LYDHIADPVANNAWAYATNF 261
L H+A+P+ N ATN
Sbjct: 690 LSAHLANPIGAN---IATNL 706
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 34/192 (17%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L
Sbjct: 916 EPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL----- 970
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
G+ WF+AG + L + + + E +R GG +
Sbjct: 971 --GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 1010
Query: 184 --GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
LD YPG FDPL L D + E+KNGRLA+ ++ G Q + TG+ P+ N
Sbjct: 1011 KGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLAN 1063
Query: 242 LYDHIADPVANN 253
L H+A+P+ N
Sbjct: 1064 LTAHLANPLGAN 1075
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 133/262 (50%), Gaps = 43/262 (16%)
Query: 29 VADGGRITMRRTVKSAPQSIWYGPDRPK---YLGPFSEQTPSYLTGEFPGDYGWDTAGLS 85
VA + R V A + DR K Y+G S+ + +YL G PGD+G+D GL
Sbjct: 2 VARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGA-SQSSLAYLDGTLPGDFGFDPLGL- 59
Query: 86 ADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGV--KFGEAVWFKAGAQI 137
DP F + + L EVIH+RWAMLGA GC+ PE+L G+ WF++G I
Sbjct: 60 LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGV-I 118
Query: 138 FSEGGLD-YLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLGE----GL--- 185
G D Y +P I+ ++V M F E R+ G +G+ GL
Sbjct: 119 PPAGSYDGYWADP--------YTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAI 170
Query: 186 -----DPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
D YPGG F + L ELK+KE+KNGRLAM +M G+ QA++TGKGP
Sbjct: 171 FKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVLTGKGPF 230
Query: 240 ENLYDHIADPVANNAWAYATNF 261
+NL +H+ADPV NN TNF
Sbjct: 231 QNLVEHLADPVNNNIL---TNF 249
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 123/253 (48%), Gaps = 46/253 (18%)
Query: 7 QQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVK-SAPQS---IWYGPDRPKYLGPF 61
Q A A + R QS V G G +R+ + +AP+ +W+ P
Sbjct: 113 QSIALAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGNAPEEERLVWFPNATP------ 166
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121
P +LTGEFPGD G+D GLS DP F + R EV H R AMLG +GC+ PE+
Sbjct: 167 ----PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELF--- 219
Query: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVL-MGFVEGYRIGGGP 180
F + WF L NL L + A QV+ + + G R
Sbjct: 220 ---FSQGPWFD-------------LSGFNLTR----LGLVALQVIAPLEYWRGNRGFSWN 259
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
+G D YPG FDPL L DD E K+KE+KNGRLAM +M G VQ+ +TGK P+
Sbjct: 260 GDDGPDQSYPG--FDPLRLTDD-----ETKLKEIKNGRLAMTAMLGLEVQSHITGKSPLV 312
Query: 241 NLYDHIADPVANN 253
NL +H+++P + N
Sbjct: 313 NLSEHLSNPASVN 325
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 104/191 (54%), Gaps = 35/191 (18%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YLTGE GD G+D AGL+ADP TF + + EV H R +ML +GC+ PE+L
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------- 780
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL---G 182
G WF QI+ + +D+ + A+ A QVV +E +R GG L
Sbjct: 781 GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDE 822
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
E +D YPG FDPL L + K E+KNGRLAM MFG VQ+ VTGK PI NL
Sbjct: 823 ETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNL 875
Query: 243 YDHIADPVANN 253
DH++ P+ N
Sbjct: 876 IDHLSHPLTAN 886
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 98/193 (50%), Gaps = 36/193 (18%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L
Sbjct: 542 EPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL----- 596
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG---P 180
G+ WF+AG + L + + + E +R GG
Sbjct: 597 --GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 636
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
GE LD YPG FDPL L D + E+KNGRLA+ ++ G Q + TG+ P+
Sbjct: 637 KGE-LDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLA 688
Query: 241 NLYDHIADPVANN 253
NL H+A+P+ N
Sbjct: 689 NLSAHLANPIGAN 701
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 118/257 (45%), Gaps = 56/257 (21%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVAD----GGRITM-----RRTVKSAPQSIWYGPDRPKYL 58
QS G++ L +E + + GG + M R++ KS + +W+ P L
Sbjct: 302 QSHITGKSPLVNLSEHLSNPASVNILTGGGSVAMFAASGRKSQKSDERPLWF----PNTL 357
Query: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEIL 118
P S+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L
Sbjct: 358 AP------SWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL 411
Query: 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG 178
G+ +W++A N +AI+ + G +
Sbjct: 412 -------GKGIWYEAAQ--------------NAGIGLKEVAIFTAAYGVFEVARGVK--- 447
Query: 179 GPLGEGLDP--LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
E DP +YPG FDPL L D K E+KNGRLA+ ++ GF VQ V G
Sbjct: 448 ----ENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGG 496
Query: 237 GPIENLYDHIADPVANN 253
P+ NL +H+ P+ N
Sbjct: 497 SPLANLAEHLQQPLQRN 513
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 31/149 (20%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L
Sbjct: 916 EPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL----- 970
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG---P 180
G+ WF+AG + L + + + E +R GG
Sbjct: 971 --GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQ 1010
Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAEL 209
GE LD YPG FDPL L D + AE+
Sbjct: 1011 KGE-LDRSYPG--FDPLNLTTDYTRAAEV 1036
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
FDPL LA DPD +A ++V E+ +GRLAM M G V ++ GKG
Sbjct: 931 FDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL-GKG 973
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 130/264 (49%), Gaps = 43/264 (16%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRIT--MRRTVKSAPQSIWYGPDRPKYLGPFS 62
+IQ + +L + + R + DG T R+T A Q RP +L
Sbjct: 10 SIQPGSLFNNKSLDRGSPAGRLSWLGDGAAATPRYRQTCVGAQQ-------RPTWLPGLD 62
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
P +L G GD+G+D GL+ DP + + E++H R+AMLG G + ++L G
Sbjct: 63 P--PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTG 120
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR------- 175
+ VWF+AGA + D+ L + Q+VLMGFVE R
Sbjct: 121 IS-KIPVWFEAGAVKY-----DFANTKTL---------FLVQLVLMGFVETKRYMDFVSP 165
Query: 176 ---------IGGGPLGEGLDPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
G +GL+P YPGG +PLGLA D + + K+KE+KNGRLAM +M
Sbjct: 166 GSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAML 225
Query: 226 GFFVQAIVTGKGPIENLYDHIADP 249
G FVQA VT GPI+NL +H+++P
Sbjct: 226 GIFVQASVTHVGPIDNLVEHLSNP 249
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 115/225 (51%), Gaps = 43/225 (19%)
Query: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGAL 110
Y+ S+Q +YL G PGD+G+D G+S DPE F + L EVIH RWAMLG
Sbjct: 70 YMMGVSDQNMAYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVA 128
Query: 111 GCVFPEILSKNGV--KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
G V PEIL GV + VWF +GA I +G DY NP + I+ + +M
Sbjct: 129 GIVAPEILGGMGVIPESTGLVWFTSGA-IPPQGTFDYWANP--------MTIFWVNMCMM 179
Query: 169 GFVE-------------------GYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPDQFAE 208
F E G+ G G G +P YPGG F+P L D A
Sbjct: 180 NFAEIKRGQDYWFPGSQAETPLLGWEKGFGGSG---NPTYPGGKWFNPFNLGKD--DMAS 234
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
++ KE+KNGRLAM + G VQA VTG+GP +N+ DH+ADP N
Sbjct: 235 MQKKEVKNGRLAMMAFLGCMVQAAVTGEGPWKNICDHVADPFGAN 279
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 108/224 (48%), Gaps = 19/224 (8%)
Query: 34 RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS-YLTGEFPGDYGWDTAGLSADPETFA 92
R+ + P ++ DRP + + + P+ +L G PGDYG+D LSADPE
Sbjct: 16 RVATKTRASRGPVAVSANADRPVW---YPGKAPAAHLDGSLPGDYGFDPLSLSADPEMRQ 72
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNL 151
+ E+ H+RWAMLG GCV PE+L+K GV W A Q ++ GG L
Sbjct: 73 WMVQAELQHARWAMLGVAGCVAPELLTKIGVA-DLPNWVDAATYQYWAPGG-------TL 124
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPL------GEGLDPLYPGGAFDPLGLADDPDQ 205
Q + WA + PL D YP G FD G A D
Sbjct: 125 FFIQMAMFNWAEIRRWQDMKNPGSVNTDPLFGYNSNDTNTDVGYPKGLFDKFGWAKDEKT 184
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
AELK+KE+KNGRLAM + G Q + TG GP+ENL+ H+ +P
Sbjct: 185 TAELKLKEIKNGRLAMLAFLGICAQYVQTGVGPVENLFSHMGNP 228
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 114/226 (50%), Gaps = 34/226 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D GL +DPE + E++HSRWAML A
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAA 113
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + PE+L K G + W AGA+ DY +P ++ Q+ LMG+
Sbjct: 114 GILVPEVLEKWGF-MEDYSWIDAGAR-------DYFADP--------WTLFVSQMALMGW 157
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL--ADDPDQFAELKVKEL 214
EG R P ++P YPGG + G P+ L+ KE+
Sbjct: 158 AEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 217
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
KNGRLAM + GF+ QA+ TG+GPI+NL H+ADP N ++ T+
Sbjct: 218 KNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 100/184 (54%), Gaps = 20/184 (10%)
Query: 75 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134
GD+G+D GL PE + +E E+IH RWAML G + PE L FG W KA
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-----FGN--WVKAQ 53
Query: 135 AQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYP 190
GG YLGNP + ++ I + + + FVE R DP YP
Sbjct: 54 EWAAVPGGQATYLGNP--VPWGTLPTILVIEFLAIAFVEHQR------SMEKDPEKRKYP 105
Query: 191 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADP 249
GGAFDPLG + DP +F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL H+ADP
Sbjct: 106 GGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 165
Query: 250 VANN 253
N
Sbjct: 166 WHNK 169
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 118/225 (52%), Gaps = 38/225 (16%)
Query: 67 SYLTGEFPGDYGWDTAGLSADPET-----FAKNREL---EVIHSRWAMLGALGCVFPEIL 118
SYL G PGD+G+D GL DP + F R L E++H+RWAMLGA GC+ PE L
Sbjct: 12 SYLDGTLPGDFGFDPLGLF-DPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYL 70
Query: 119 SKNGV--KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR- 175
+ V K +WFK G + G DY G P + ++A Q+V+MG EG R
Sbjct: 71 AHEKVIPKATGLLWFKTGFLPQASAGFDY-GLP-------LGVLFAVQMVMMGVAEGLRG 122
Query: 176 ---IGGGPLGE----GLDPL----------YPGG-AFDPLGLADDPDQFAELKVKELKNG 217
I G L GL+ L YPGG F+PLGL + P E++ E+++G
Sbjct: 123 AEYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHG 182
Query: 218 RLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
RLAM + G+ QA+VTG+GP +N H+ +P NN + N +
Sbjct: 183 RLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLLGNVL 227
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 130/274 (47%), Gaps = 43/274 (15%)
Query: 1 MATSAIQQSAFA---GQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWY------G 51
MAT+ S A +A ++ NE V GGR + + +
Sbjct: 1 MATAVCASSTIAVAPSSSAQKKPNEIVSAKTTFLGGRPLRNKAHVAKAAKAVFSVTAAAA 60
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
+RP + P++L G P D+G+D GL ++PE + E++HSRWAMLGA G
Sbjct: 61 TERPLWFP--GSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
PE L+K G+ W+ AG Q +Y + Q+ L I +++L+G+
Sbjct: 119 IFIPEALTKLGI-LNTPFWYTAGEQ-------EYFTD------QTTLFI--VEMILLGWA 162
Query: 172 EGYRIGG--GPLGEGLDPL------------YPGG-AFDPLGLAD-DPDQFAELKVKELK 215
EG R P DP+ YPGG FDP G P++ EL+ KE+K
Sbjct: 163 EGRRWADILKPGSVNTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIK 222
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
NGRLAM ++ G + QA+ TG PI+NL H+ADP
Sbjct: 223 NGRLAMLAVMGAWFQAVYTGARPIDNLLAHLADP 256
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G P GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 28 QPRPAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL---- 83
Query: 123 VKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W KA +G YLGNP + ++ I A + + + F E R
Sbjct: 84 ---GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK-- 136
Query: 182 GEGLDP---LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKG 237
DP YPGGAFDPLG + DP +F ELK+KE+KNGRLAM + GF V Q+ G G
Sbjct: 137 ----DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTG 192
Query: 238 PIENLYDHIADPVANN 253
P+ENL H+ADP NN
Sbjct: 193 PLENLATHLADPWHNN 208
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 30/204 (14%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P++L G P DYG+D L +DP+ A R+ E++H RWAM+G G + P +L+K G
Sbjct: 6 DTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLG 65
Query: 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI------ 176
VWF+AG + N N + A+ + + MGFVE R
Sbjct: 66 A-MNVPVWFEAGK----------VANDN--SSVPFSALLMVEFLAMGFVETKRWYDIKSP 112
Query: 177 ---GGGPLGEGLDPL------YPGGAF-DPLGLADDPDQ-FAELKVKELKNGRLAMFSMF 225
G G + D YPGG F DP G + ++ + L+VKE+ NGRLAM +M
Sbjct: 113 GSQGDGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMV 172
Query: 226 GFFVQAIVTGKGPIENLYDHIADP 249
GF+ Q TGKGP++NL+DHIADP
Sbjct: 173 GFWAQYAATGKGPVDNLFDHIADP 196
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 194 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
FDPL L DPD A ++ EL + R AM + G V A++T G + A VAN+
Sbjct: 22 FDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMNVPVWFEAGKVAND 81
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 32/200 (16%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P++L G P D+G+D GL ++PE + E++HSRWAMLGA G PE L+K G+
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGI-L 131
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGE 183
W+ AG Q +Y + Q+ L I +++L+G+ EG R P
Sbjct: 132 NTPFWYTAGEQ-------EYFTD------QTTLFI--VEMILLGWAEGRRWADILKPGSV 176
Query: 184 GLDPL------------YPGG-AFDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG FDP G P++ EL+ KE+KNGRLAM ++ G +
Sbjct: 177 NTDPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWF 236
Query: 230 QAIVTGKGPIENLYDHIADP 249
QA+ TG PI+NL H+ADP
Sbjct: 237 QAVYTGARPIDNLLAHLADP 256
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 111/219 (50%), Gaps = 45/219 (20%)
Query: 40 TVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
TV++A +++W P P++L G PGDYG+D GL+ DP+ A E E
Sbjct: 33 TVRAADRTLWLPNTVP----------PAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAER 82
Query: 100 IHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 159
+ RWAM G G +F + L G A WF GA++ +S +
Sbjct: 83 TNGRWAMAGVAGILFTDAL-----HIGSAPWFSIGAEL-----------------ESPIP 120
Query: 160 IW---ACQVVLMGFVEGYRIGGGPLG--EGLDPLYPGGAFDPLGLADDPDQFAELKVKEL 214
+W + V+ GF+E R+ G GL +P FDPLG+ E+ VKE+
Sbjct: 121 LWGLATIEFVIFGFLEMKRLEGWKKTGQNGLLNWFP---FDPLGMNSK-----EMMVKEV 172
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KNGRLAMF+ GF VQA+VT +GP+ NL HIADP NN
Sbjct: 173 KNGRLAMFAWCGFMVQALVTREGPVTNLEKHIADPFNNN 211
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 132/284 (46%), Gaps = 47/284 (16%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVAD----GGRITMRRTVKSAPQSIWYGP------- 52
SA+ S+ A +++ V G A GR+ + ++PQ+ P
Sbjct: 3 SAVCASSNVAVVAGPSTSKVVNSAGPARTSLLAGRVRRVTRIAASPQAEAPVPAQPSLPN 62
Query: 53 -DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
DRP + Q P +L G PGD+G+D GL +DPE + E++H RWAMLGA G
Sbjct: 63 NDRPLWFP--GSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
PE L+K G+ W AG Q + A ++ I +++L +
Sbjct: 121 IFIPEALTKAGI-LNTPSWTVAGDQQY------------FTDATTLFVI---EIILFAWA 164
Query: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD--DPDQFAELKVKEL 214
EG R P +DP+ YPGG FDPLG D + +L+ +E+
Sbjct: 165 EGRRWADIINPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREI 224
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
KNGRLAM ++ G VQA T GPI+NL H+ADP N +A +
Sbjct: 225 KNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFALS 268
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 113/226 (50%), Gaps = 34/226 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D GL +DPE + E++HSRWAML
Sbjct: 56 GPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVA 113
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + PE+L K G + W AGA+ DY +P ++ Q+ LMG+
Sbjct: 114 GILVPEVLEKWGF-MEDYSWIDAGAR-------DYFADP--------WTLFVSQMALMGW 157
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL--ADDPDQFAELKVKEL 214
EG R P ++P YPGG + G P+ L+ KE+
Sbjct: 158 AEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 217
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
KNGRLAM + GF+ QA+ TG+GPI+NL H+ADP N ++ T+
Sbjct: 218 KNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122
+ P +L G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 14 QPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL---- 69
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL 181
G W +A G Y G P + + + A + + + FVE R G P
Sbjct: 70 ---GLGNWVEAQKWAAIPGSQATYFGVP--VPWGYLPIVLAVEFLAIAFVESQR-NGEPD 123
Query: 182 GEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT-GKGPIE 240
E YPGGAFDPLG + DP +F E KVKE+KNGRLA+ + GF VQA G GP+E
Sbjct: 124 PEKRK--YPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLE 181
Query: 241 NLYDHIADPVANN 253
NL H++DP N
Sbjct: 182 NLATHLSDPWHRN 194
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 112
DRP + + P +L G PGD+G+D GL +DPE + E++H RWAMLGA G
Sbjct: 1 DRPLWFP--GSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGI 58
Query: 113 VFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP-NLIHAQSILAIWA-----CQVV 166
PE L+K G+ W AG Q Y +P L + IL WA +V
Sbjct: 59 FIPEALTKAGI-LNTPSWNVAGDQ-------QYFADPTTLFVIELILFAWAEGRRWADIV 110
Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGL--ADDPDQFAELKVKELKNGRLAMFS 223
G V + G D YPGG FDPLG D + EL+ KE+KNGRLAM +
Sbjct: 111 NPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLA 170
Query: 224 MFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 259
+ G VQA T GPI+NL H+ADP N +A +
Sbjct: 171 VLGAVVQANYTHTGPIDNLLAHLADPGHNTIFALSN 206
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 98/181 (54%), Gaps = 20/181 (11%)
Query: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKA 133
PGD+G+D GL P + +E E+IH RWAML G + PE L G W KA
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKA 55
Query: 134 GAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LY 189
GG YLGNP + ++ I A + + + FVE R DP Y
Sbjct: 56 QEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------SMEKDPEKKKY 107
Query: 190 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIAD 248
PGGAFDPLG + DP + ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL H+AD
Sbjct: 108 PGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 167
Query: 249 P 249
P
Sbjct: 168 P 168
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 116/237 (48%), Gaps = 48/237 (20%)
Query: 63 EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL--------EVIHSRWAMLGALGCVF 114
E+ SYLTG PGD+GWD L+ + N + EVIH RWAMLGA G +
Sbjct: 123 ERALSYLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALS 182
Query: 115 PEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI----WACQ---- 164
PE+L K GV E WF+AG GLD + NLI I W Q
Sbjct: 183 PEVLGKAGVIPKETGLTWFQAG-------GLD--SSSNLIAVPFTGPIPFQYWTDQYTLL 233
Query: 165 ---VVLMGFVEG-----YRIGGGPLGE---GLD--------PLYPGGAF-DPLGL-ADDP 203
+V MGF E Y+ G + GL+ P YPGG F + GL A D
Sbjct: 234 FTMLVAMGFAETRRWQEYKEPGSVQKQFFLGLEKLTPPSQQPAYPGGGFFNFAGLGAKDE 293
Query: 204 DQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
Q ELKVKE++NGRLAM + GF VQA VT GP +NL DHI P A N + TN
Sbjct: 294 KQMFELKVKEIRNGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRLTN 350
>gi|117663141|gb|ABK55743.1| chloroplast type III LHCII CAB precursor protein [Cucumis sativus]
Length = 84
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 71/85 (83%), Gaps = 3/85 (3%)
Query: 167 LMGFVEGYRIGG-GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSM 224
LM VEG+RI G +GEG D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSM
Sbjct: 1 LMVLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 59
Query: 225 FGFFVQAIVTGKGPIENLYDHIADP 249
FGFFVQAIVTGKGP+ENL DH+ DP
Sbjct: 60 FGFFVQAIVTGKGPLENLLDHLDDP 84
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 113/226 (50%), Gaps = 37/226 (16%)
Query: 33 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 92
GR+TM + W+ P +P+ P +L G PGD+G+D GL+ PE
Sbjct: 10 GRVTMS-------SAEWF-PGQPR---------PVHLDGSSPGDFGFDPLGLATVPENSE 52
Query: 93 KNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNL 151
+ +E EV H RWAML G + PE L G W KA GG Y G P
Sbjct: 53 RFKESEVYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAAVPGGQATYFGVP-- 103
Query: 152 IHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAFDPLGLADDPDQFAE 208
+ ++ I A + + + F E R DP YPGGAFDPLG + DP + E
Sbjct: 104 VPWGNLPTILAIEFLAIAFAEHQRTMEK------DPEKKKYPGGAFDPLGFSKDPVKLEE 157
Query: 209 LKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 253
K+KE++NGRLAM + GF V Q+ G GP+ENL H+ADP NN
Sbjct: 158 YKLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHLADPWHNN 203
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 125/267 (46%), Gaps = 39/267 (14%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
MAT Q SA + +S F+ G ++++ S+ +S + ++L
Sbjct: 1 MATVTTQASAAVFRPCASKS-RFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPG 59
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
S +PSYL G PGD G+D GL+ DPE + E+++SRWAMLG G + PE+ +K
Sbjct: 60 LS--SPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTK 117
Query: 121 NGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG- 178
G+ W+ AG A+ F+ ++ + +L +VE R
Sbjct: 118 IGI-INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDI 160
Query: 179 -GPLGEGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 225
P DP+ YPGG F+PL A E K KEL NGRLAM +
Sbjct: 161 KNPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPT----EEAKEKELANGRLAMLAFL 216
Query: 226 GFFVQAIVTGKGPIENLYDHIADPVAN 252
GF VQ VTGKGP +NL HI+DP N
Sbjct: 217 GFIVQHNVTGKGPFDNLLQHISDPWHN 243
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 117/242 (48%), Gaps = 22/242 (9%)
Query: 25 RKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
R G + + + R+V SI R P SE P + PG++ +D L
Sbjct: 6 RTFGASPVAKQAVNRSVVRP--SIRVQAQRAGNFAPGSE--PKEYLNDLPGNFNFDPLEL 61
Query: 85 SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLD 144
+ T + RE E+IH RWAMLGA GC+ E+L G W+ A +
Sbjct: 62 GKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVL-------GLGNWYDAPLWAVTGDKPT 114
Query: 145 YLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPD 204
+ G +IL + +VV M EG R + + L YPGGAFDPLG + DP
Sbjct: 115 WFGIEVPFDIATILGV---EVVAMAVAEGLRNDNQDMEKRL---YPGGAFDPLGFSKDPK 168
Query: 205 QFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN--FV 262
F + K+KELKNGRLAM + GF Q TGK +E L DH++ P NN +ATN V
Sbjct: 169 SFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEALGDHLSSPFFNN---FATNGVSV 225
Query: 263 PG 264
PG
Sbjct: 226 PG 227
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 120/218 (55%), Gaps = 36/218 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ +YL G PGD+G+D GLS DPE F + R L E+ + R AM+G +G + P
Sbjct: 54 SKQSLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 112
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
E L K G+ E WF+AGA I G Y +P ++ ++ L+GF E
Sbjct: 113 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 163
Query: 174 YRI----GGGPLGE----GL--------DPLYPGGA-FDPLGLADDPD-QFAELKVKELK 215
R+ G +G+ GL DP YPGG F+PLG + + ELK+KE+K
Sbjct: 164 RRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIK 223
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + G +QAI TG GP +NL DH++DPV NN
Sbjct: 224 NGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 261
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 30/203 (14%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+P YL G GDYG+D GL A+PE R+ E+ ++RWAMLG G + EI++
Sbjct: 45 SPKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIINP---- 100
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR--------- 175
E W+ AG E + GN ++ I A + +LM FVE R
Sbjct: 101 --EQWWYSAG---MPENLPSFDGN-----KVNMGGILAWEFLLMHFVEVRRWQDIRKKDS 150
Query: 176 IGGGPLGEGL---DPL--YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 230
+ P L +P YPGG FDPLG + F E++ KE+KNGRLAM + F +Q
Sbjct: 151 VNADPFNPNLKVPNPEMGYPGGPFDPLGFSKG--NFKEVQTKEIKNGRLAMVAFVAFTIQ 208
Query: 231 AIVTGKGPIENLYDHIADPVANN 253
A TGKGP+ NL DH+A P +NN
Sbjct: 209 AQATGKGPLANLTDHLASPFSNN 231
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 116/232 (50%), Gaps = 28/232 (12%)
Query: 20 SNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGW 79
+ F + V + R T +++ + +W+ P +E P++L G+ P DYG+
Sbjct: 5 TRSFTQTVAPKTSVKARARVTARASARPMWF---------PGAE-APAHLRGDLPCDYGF 54
Query: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFS 139
D L P+ A+ RE E++H+RWAM+G G V EI G+ W A +
Sbjct: 55 DPLNLGEKPDNLARYREAELMHARWAMMGVAGAVGVEIA-------GQGDWASAQPTTW- 106
Query: 140 EGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGL 199
+ YLGN HA + A+ VL+ F E R G LYPGG+FDP GL
Sbjct: 107 DATAKYLGNET--HA-PLFAVIGVNGVLVAFAESQRQA----ATGEARLYPGGSFDPAGL 159
Query: 200 ADDPDQFAELKVKELKNGRLAMFSMFGFFV--QAIVTGKGPIENLYDHIADP 249
+ D F LK KEL NGR+AM + FG QA +G GP++ L +H+ADP
Sbjct: 160 SKGKD-FETLKRKELANGRVAMMAFFGIMAQHQADPSGPGPVKQLANHLADP 210
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 127/264 (48%), Gaps = 42/264 (15%)
Query: 21 NEFVRKVGVADGGRITM---RRTVKSAPQSIW-----YGPDRPKYLGPFSEQTPSYLTGE 72
N +R+ G + + RRT+ +A + + PDRP + P +L G
Sbjct: 15 NREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFP--GSSPPEWLDGS 72
Query: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 132
PGD+G+D GL +DPE + E++HSRWAML G + PE+L + G W+
Sbjct: 73 LPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLERIGY-IENFSWYD 131
Query: 133 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL-- 188
AG + +Y +P ++ Q+ LMG+VEG R P ++P
Sbjct: 132 AGTR-------EYFVDPT--------TLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVP 176
Query: 189 ----------YPGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
YPGG FDP+ P+ L+ KE+KNG LAM + GF+ QAI TG+
Sbjct: 177 HVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGGLAMLAFVGFWFQAIYTGE 236
Query: 237 GPIENLYDHIADPVANNAWAYATN 260
GPIENL H+ADP N ++ T
Sbjct: 237 GPIENLMAHLADPGHCNIFSAFTR 260
>gi|116793607|gb|ABK26807.1| unknown [Picea sitchensis]
Length = 125
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%), Gaps = 2/65 (3%)
Query: 203 PDQ--FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
PD+ + ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATN
Sbjct: 61 PDRVLYLELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATN 120
Query: 261 FVPGK 265
FVPGK
Sbjct: 121 FVPGK 125
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 78/105 (74%), Gaps = 6/105 (5%)
Query: 149 PNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAE 208
PNL +SILA+ A ++VL+G E YRI G E D L+PGG FDPLGLA DPDQ A
Sbjct: 207 PNL---ESILAVVA-EIVLVGGAEYYRIINGLDLE--DKLHPGGPFDPLGLAKDPDQAAL 260
Query: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
LKVKE+KNGRLAMF+M GF+ QA VTG+GP+ENL H++DP NN
Sbjct: 261 LKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 305
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 123/275 (44%), Gaps = 54/275 (19%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 67
AF G+ SN +A R+ TV +A + PDRP + P
Sbjct: 29 SKAFLGRKLKVNSN-------IAAPVRVRSTTTVCAAAE-----PDRPLWFP--GSTPPP 74
Query: 68 YLTGEFPGDYGWDTAGL--------------------------SADPETFAKNRELEVIH 101
+L G PGD+G+D GL ++DPE+ N + E++H
Sbjct: 75 WLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVH 134
Query: 102 SRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIW 161
RWAMLGA G PE L+K G+ W+ AG Q + + L + I W
Sbjct: 135 CRWAMLGAAGIFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGW 187
Query: 162 A-----CQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDQFAELKVKEL 214
A ++ G V I G D YPGG FDPLG P + EL+ KE+
Sbjct: 188 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEI 247
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct: 248 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 282
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 120/218 (55%), Gaps = 36/218 (16%)
Query: 62 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
S+Q+ +YL G PGD+G++ GLS DPE F + R L E+ + R AM+G +G + P
Sbjct: 54 SKQSLTYLDGTLPGDFGFNPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAP 112
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEG 173
E L K G+ E WF+AGA I G Y +P ++ ++ L+GF E
Sbjct: 113 EALGKVGLVPPETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEH 163
Query: 174 YRI----GGGPLGE----GL--------DPLYPGGA-FDPLGLADDPD-QFAELKVKELK 215
R+ G +G+ GL DP YPGG F+PLG + + ELK+KE+K
Sbjct: 164 RRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIK 223
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + G +QAI TG GP +NL DH++DPV NN
Sbjct: 224 NGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 261
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPET + E++H+RWAML G
Sbjct: 58 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PE G+ W+ AG++ +Y +P + Q+ LMG+V
Sbjct: 116 ILLPEWFESLGL-IQNFSWYDAGSR-------EYFADPT--------TLLVAQLALMGWV 159
Query: 172 EGYR----IGGGPLGEGL----------DPLYPGG-AFDPLGLAD-DPDQFAELKVKELK 215
EG R + G + L D YPGG FDP+ P+ L+ KE+K
Sbjct: 160 EGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIK 219
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + G + QAI TG+GP+ENL H+ADP N
Sbjct: 220 NGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCN 257
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 109/218 (50%), Gaps = 34/218 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPET + E++H+RWAML G
Sbjct: 58 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PE G+ W+ AG++ +Y +P + Q+ LMG+V
Sbjct: 116 ILLPEWFESLGL-IQNFSWYDAGSR-------EYFADPT--------TLLVAQLALMGWV 159
Query: 172 EGYR----IGGGPLGEGL----------DPLYPGG-AFDPLGLAD-DPDQFAELKVKELK 215
EG R + G + L D YPGG FDP+ P+ L+ KE+K
Sbjct: 160 EGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIK 219
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
NGRLAM + G + QAI TG+GP+ENL H+ADP N
Sbjct: 220 NGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCN 257
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 110/219 (50%), Gaps = 34/219 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D GL ++PET + E++HSRWAML
Sbjct: 64 GPDRPVWFP--GTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVA 121
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + PEIL K G E W+ AG + +Y +P ++ Q+ LMG+
Sbjct: 122 GILIPEILQKWGF-MEEFSWYTAGER-------EYFADP--------WTLFIAQMALMGW 165
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL--ADDPDQFAELKVKEL 214
EG R P ++P YPGG + G P+ L+ KE+
Sbjct: 166 AEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 225
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KNGRLAM + GF+ QA+ TG+GP++NL H+ADP N
Sbjct: 226 KNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCN 264
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 100/203 (49%), Gaps = 36/203 (17%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+PSYL G PGD G+D GL+ DPE + E+++SRWAMLG G + PE+ +K G+
Sbjct: 59 SPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGI- 117
Query: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPL 181
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 118 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 161
Query: 182 GEGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG F+PL A E K KEL NGRLAM + GF V
Sbjct: 162 SVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFIV 217
Query: 230 QAIVTGKGPIENLYDHIADPVAN 252
Q VTGKGP +NL HI+DP N
Sbjct: 218 QHNVTGKGPFDNLLQHISDPWHN 240
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 107/214 (50%), Gaps = 34/214 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DPE + E++H+RWAMLG G
Sbjct: 60 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PEIL K G W+ AG+ ++Y +P ++ Q+ LMG+V
Sbjct: 118 ILIPEILEKIGY-VKNFSWYNAGS-------VEYFADPT--------TLFIVQLALMGWV 161
Query: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKELK 215
EG R P ++P YPGG FDP+ P+ L+ KE+K
Sbjct: 162 EGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIK 221
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 249
NGRLAM + GF QA+ G PI+NL H+ADP
Sbjct: 222 NGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 34/202 (16%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P +L G GD+G+D GL DP++ + E++H R+AMLG G + ++L G+
Sbjct: 60 PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGIS- 118
Query: 126 GEAVWFKAGAQIFSEGGLDY-LGNPNLIHAQSILAIWACQVVLMGFVEGYR--------- 175
VW+ AGA ++Y N ++ Q++LMGFVE R
Sbjct: 119 ELPVWYNAGA-------VEYGFANKR--------TLFIVQLLLMGFVETKRYMDFKSPGS 163
Query: 176 -------IGGGPLGEGLDPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
G +GL+P YPGG +PLG+A D + K+KE+KNGRLAM +M G
Sbjct: 164 QAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGI 223
Query: 228 FVQAIVTGKGPIENLYDHIADP 249
FVQA VT GPI+NL +H+++P
Sbjct: 224 FVQAYVTHTGPIDNLVEHLSNP 245
>gi|414881721|tpg|DAA58852.1| TPA: chlorophyll a-b binding protein 2, mRNA [Zea mays]
Length = 311
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 69/107 (64%), Gaps = 11/107 (10%)
Query: 2 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKY 57
AT AI A G+ A + F GRITMR+T +A S WYG DR Y
Sbjct: 4 ATMAITSRALVGKPAAGTRDVF-------GEGRITMRKTAAKPKPAASGSPWYGADRVLY 56
Query: 58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
LGP S PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RW
Sbjct: 57 LGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 103
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 38 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
R V A Q + P P P YL GE GDYG+D G +P +
Sbjct: 21 RSVVARAEQRASWFPGNP---------APEYLKGELAGDYGFDPLGFGDEPRRLEWMVQA 71
Query: 98 EVIHSRWAMLGALGCVFPEILSKNGVK-----FGEAVWFKAGAQIFSEGGLDYLGNPNLI 152
E++H RWAMLGA G + PEI +K G++ W++AG ++ +E G +G +L
Sbjct: 72 ELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAG-KVVAESGPWSMG--SLT 128
Query: 153 HAQSILAIWACQVVLMGFVE-GYRIGG---GPLGEGL-----DPL------YPGGAFDPL 197
+L WA L FV+ G + G PLG G +PL YPGG FDP
Sbjct: 129 FTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAKENGYPGGIFDPF 188
Query: 198 GLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIV-TGKGPIENLYDHIADPVANNAWA 256
++ + ++ K E+ NGRLAM +MFGF Q I GKGPI+NL DH+++P
Sbjct: 189 QMSKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGPIDNLVDHVSNPTKVT--- 245
Query: 257 YATNFV 262
+ATN V
Sbjct: 246 FATNGV 251
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 112/214 (52%), Gaps = 33/214 (15%)
Query: 67 SYLTGEFPGDYGWDTAGLSADPET--------FAKNREL---EVIHSRWAMLGALGCVFP 115
YL G PGDYG+D GL DP F R L EVIH+RWAMLGA GC+ P
Sbjct: 68 KYLDGTLPGDYGFDPLGL-LDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAP 126
Query: 116 EILSKNGVKFGEAV--WFKAGAQIFSEGGL--DYLGNPNLIHAQSILAIWACQVVLMGFV 171
EIL K GV E WF+ G + G+ D+ +P + ++AI Q + +
Sbjct: 127 EILGKAGVIPAETAVDWFRTG--VIPPAGVYKDFWADPFTLFFIEVVAI---QFAELKRL 181
Query: 172 EGYRIGGGP-----LG-EGL-----DPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRL 219
+ Y+ G LG EGL +P YPGG F + + +LK+ E+KNGRL
Sbjct: 182 QDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKNGRL 241
Query: 220 AMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
AM +MFG+ QA++TG GP +NL H+ADP N
Sbjct: 242 AMLAMFGYGAQAVITGDGPFDNLLAHLADPTGAN 275
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 120/247 (48%), Gaps = 36/247 (14%)
Query: 24 VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG 83
VR GVA RR+V + S RP +L P++L GE PGD+G+D G
Sbjct: 11 VRPSGVA-------RRSVVAKASS------RPLWLP--GSTPPAHLKGELPGDFGFDPLG 55
Query: 84 LSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGL 143
L A+P++ RE E++HSRWAM G + EI+ + W+ AG+Q+ S
Sbjct: 56 LGANPDSLKWFRESELVHSRWAMAAVAGILVQEIVRPD------VFWYSAGSQVESP--- 106
Query: 144 DYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL-----DPLYPGGAFDPLG 198
LG L+ + W + + P+ +P YPGG F P
Sbjct: 107 --LGPLGLLAFEFFCMHWVELRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGGVFAPF- 163
Query: 199 LADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
P AELKVKE+KNGRLAM + GF + A VTGKGPI L +H+ADP ++ A
Sbjct: 164 ---IPGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFSKA 220
Query: 259 TNFVPGK 265
VPG+
Sbjct: 221 A-VVPGQ 226
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 111/202 (54%), Gaps = 35/202 (17%)
Query: 78 GWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV-- 129
G+D GLS DPE F + + L EVI+ R+AMLGA G + PEI K G+ E
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGGPLGE-- 183
WF+ G I G Y +P ++ ++ LMGF E R+ G +G+
Sbjct: 60 WFQTGV-IPPAGSYTYWADP--------YTLFVFEMALMGFAEHRRLQDWYNPGSMGKQY 110
Query: 184 --GL--------DPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GL DP YPGG F +PLG D ELK+KE+KNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 233 VTGKGPIENLYDHIADPVANNA 254
VTG GP +NL DH+ADPV+NN
Sbjct: 171 VTGVGPFQNLLDHLADPVSNNV 192
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D L A+P + E++H+R+AML G + PE+L+ G
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGFS- 126
Query: 126 GEAVWFKAGAQIFSEGGLDYLG-NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP---- 180
W AG + G Y +L Q +L WA FV+ P
Sbjct: 127 ----WPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQDPIFSN 182
Query: 181 --LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
L +G +P YPGG FDP G + LK KE+KNGRLAM + GF QA TG P
Sbjct: 183 NKLPDGNEPGYPGGIFDPFGWSKG--DMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTP 240
Query: 239 IENLYDHIADPVANNAW 255
++NL H+ADP A W
Sbjct: 241 LKNLATHLADPWATTVW 257
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 117/216 (54%), Gaps = 36/216 (16%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEI 117
Z +YL G PGD+G+D GLS DPE F + R L E+ + R AM+G +G + PE
Sbjct: 55 ZXLTYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEA 113
Query: 118 LSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175
L K G+ E WF+AGA I G Y +P ++ ++ L+GF E R
Sbjct: 114 LGKVGLVPSETAIPWFQAGA-IPPAGTYQYWADP--------YTLFVFEMALIGFAEHRR 164
Query: 176 I----GGGPLGE----GL--------DPLYPGGA-FDPLGLADDPD-QFAELKVKELKNG 217
+ G +G+ GL DP YPGG F+PLG + + ELK+KE+KNG
Sbjct: 165 LQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNG 224
Query: 218 RLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
RLAM + G +QAI TG GP +NL DH++DPV NN
Sbjct: 225 RLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 260
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 112/225 (49%), Gaps = 34/225 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PG++G+D GL +DPE + E++H+RWAMLG G
Sbjct: 60 PDRPLWFP--GSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PEIL K G W+ AG+ ++Y +P ++ Q+ LMG+V
Sbjct: 118 ILIPEILEKIGY-VKNFSWYNAGS-------VEYFADPT--------TLFIVQLALMGWV 161
Query: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKELK 215
EG R P ++P YPGG FDP+ P+ L+ KE+K
Sbjct: 162 EGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIK 221
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
NGRLAM + GF QA+ G PI+NL H+ADP N ++ T+
Sbjct: 222 NGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTS 266
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL G PGD+G+D L A+P + E++H+R+AML G + PE+L+ G
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGFS- 126
Query: 126 GEAVWFKAGAQIFSEGGLDYLG-NPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP---- 180
W AG + G Y +L Q +L WA FV+ P
Sbjct: 127 ----WPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQDPIFSN 182
Query: 181 --LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
L +G +P YPGG FDP G + LK KE+KNGRLAM + GF QA TG P
Sbjct: 183 NKLPDGNEPGYPGGIFDPFGWSKG--DMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTP 240
Query: 239 IENLYDHIADPVANNAW 255
++NL H+ADP A W
Sbjct: 241 LKNLATHLADPWATTVW 257
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 26/204 (12%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ PSYL GE GDYGWD GL A PE R+ E++H+RWAML G + EI+ K GV
Sbjct: 52 EAPSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIV-KPGV 110
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
F + AG + G+++ G ++ +LA W + +L +VE R +
Sbjct: 111 FF-----YNAGLPE-NLPGINFGGPEGKVNLGGLLA-W--EFLLFHWVEVRRWQDIKKKD 161
Query: 184 GL--DPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
+ DP+ YPGG FDP G + F E++ KE+KNGRLAM + GF +
Sbjct: 162 SVNQDPIFKGNKVPNPELGYPGGIFDPFGFSK--GNFKEVQTKEIKNGRLAMVAFVGFII 219
Query: 230 QAIVTGKGPIENLYDHIADPVANN 253
QA TG+GP+ NL H+A+P NN
Sbjct: 220 QAQATGQGPLANLGAHLANPFGNN 243
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 44/243 (18%)
Query: 37 MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
+R+TV A +++W P++L G PGD+G+D GL ADPE A E
Sbjct: 30 VRQTVVRAERALWLP----------GGDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAE 79
Query: 97 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
E +H+RWAML G E++ + W++A + + + +P +
Sbjct: 80 SERVHARWAMLAVAGIAVQEVVRPD------VFWYEAALK----SPMPFGNSP-----AA 124
Query: 157 ILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGLADD 202
IL + A ++ M FVE R P + DP+ YPGG F P+
Sbjct: 125 ILGLVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNKLPKHEVGYPGGIFAPV----I 180
Query: 203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV 262
P AELK+KE+KNGRLAM + GF +QA VTGKGP+ +L DH+++P+ ++ A +
Sbjct: 181 PGDLAELKLKEIKNGRLAMLAFAGFVMQAQVTGKGPLASLGDHLSNPIGTTIFSKAV-VI 239
Query: 263 PGK 265
PG+
Sbjct: 240 PGQ 242
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 104/191 (54%), Gaps = 35/191 (18%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P++LTGEFPGD G+D GLS DP+ FA+ R EV H R AMLG +GCV E L F
Sbjct: 18 PAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQEWL------F 71
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG---PLG 182
+ WF +S+ L LG LI Q I + E +R GG
Sbjct: 72 NKGAWFD-----YSDFDLPRLG---LIALQVIAPL-----------EYWRGNGGFSWNGN 112
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
+G D YPG FDPLGL + + K++E+KNGRLAM +M G VQ+ +TGK P+ NL
Sbjct: 113 DGPDRSYPG--FDPLGLTTE-----DTKLREIKNGRLAMSAMLGLEVQSHITGKSPLTNL 165
Query: 243 YDHIADPVANN 253
DH++ P N
Sbjct: 166 GDHLSSPFTAN 176
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 102/192 (53%), Gaps = 37/192 (19%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P+YLTGEFP D G+D AGL+ADP+ + + R EV + R AML +GCV+PE+L
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELL------- 625
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG--- 182
G VWF+ ++ D+ A+ + QVV +E +R G G G
Sbjct: 626 GNGVWFEVWNKV------DFYR----------FALISLQVV--APLEYWR-GNGGFGWDG 666
Query: 183 -EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
E D YPG FDP L + K E+KNGRLAM MFG VQ VT +GP+ N
Sbjct: 667 EEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVAN 719
Query: 242 LYDHIADPVANN 253
L +H+ P+A N
Sbjct: 720 LIEHLRHPLAAN 731
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 111/250 (44%), Gaps = 47/250 (18%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVAD----GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
QS G++ L + + A+ GG + M T + +W+
Sbjct: 153 QSHITGKSPLTNLGDHLSSPFTANILTGGGSVAMFSTSGKVDRPLWFP----------GG 202
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
PSYLTG++ GD G+D AGL+ADP+ F + R EV H R AML +G V P+IL
Sbjct: 203 YAPSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAIVGAVVPDIL----- 257
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
G+ W++A N + +A++ ++ G + P
Sbjct: 258 --GKGAWYEAAQ--------------NAGIGVNEVAVFTAAYGVVEVARGLKANSDPTKN 301
Query: 184 GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243
YPG FDPL L D K E+KNGRLA+ M G VQ VTG P+ NL
Sbjct: 302 -----YPG--FDPLKLTTD-----YTKEAEIKNGRLALTGMLGLEVQRHVTGVSPLVNLV 349
Query: 244 DHIADPVANN 253
+H+ P+ +N
Sbjct: 350 EHVKHPLNHN 359
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 95/192 (49%), Gaps = 34/192 (17%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
Q P++LTGE+P D G+D L+ADP +A+ R EV H+R +ML +G + PE+L
Sbjct: 761 QPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSILPELL----- 815
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG-PLG 182
G+ WF+ G + + I IL A E +R GG
Sbjct: 816 --GKGAWFEVGNSV------------DGIKLGFILMAIAAP------TEYWRGNGGFNWD 855
Query: 183 EGL-DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
+G D YPG FDPL L D K E+KNGRLAM + G Q + TG+ P+ N
Sbjct: 856 KGTADRSYPG--FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLATGESPLAN 908
Query: 242 LYDHIADPVANN 253
L H+A+PV N
Sbjct: 909 LAAHLANPVGAN 920
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 95/192 (49%), Gaps = 34/192 (17%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
Q P++LTGE+P D G+D L+ADP +A+ R EV H+R +ML +G + PE+L
Sbjct: 388 QPPAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSIVPELL----- 442
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG-PLG 182
G+ WF+ G + + I IL A E +R GG
Sbjct: 443 --GKGAWFEVGNSV------------DGIKLGFILMAIAAP------TEYWRGNGGFNWD 482
Query: 183 EGL-DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
+G D YPG FDPL L D K E+KNGRLAM + G Q + TG+ P+ N
Sbjct: 483 KGTADRSYPG--FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLATGESPLAN 535
Query: 242 LYDHIADPVANN 253
L H+A+PV N
Sbjct: 536 LAAHLANPVGAN 547
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 154 AQSILAIWACQV-VLMGFVEGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKV 211
A+S++ W + G +G G L YP FDPL LA DP +A ++V
Sbjct: 361 AESVMHQWPVAMFAATGHKDGVWFPGAQPPAHLTGEYPADRGFDPLSLAADPTVYARMRV 420
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKG 237
E+ + RL+M ++ G V ++ GKG
Sbjct: 421 SEVFHARLSMLAIVGSIVPELL-GKG 445
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 125/258 (48%), Gaps = 41/258 (15%)
Query: 23 FVRKVGVADGGRITMRRTVKSAPQSIWY-GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 81
+++ VA ++ + V + W G + PK+L +P+ L G++G+D
Sbjct: 4 MMKRSAVAARPAVSRKAVVTCVARQSWLPGSEIPKHL-----DSPAALA--MAGNFGFDP 56
Query: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 141
GL D E ++ E++H+R AM G + P +L+K G W+ AG ++ E
Sbjct: 57 LGLGKDAEALRWYQQAELVHARTAMTAVAGILIPGLLTKAGA-LNVPEWYDAG-KVAIES 114
Query: 142 GLDYLGNPNLIHAQSILAIWACQVVLMGFVEG-----YRIGGGPLGEGL----------- 185
G A+ A Q+ L GFVE ++ G +G
Sbjct: 115 SFAPFG-----------ALLAVQLFLTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGT 163
Query: 186 -DPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 244
D YPGG FDPLGL+ D D+ A+ K+KE+KNGRLAM + GF Q TGKGPI+NL
Sbjct: 164 GDNGYPGGIFDPLGLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAA 223
Query: 245 HIADPVANNAWAYATNFV 262
H+ADP N YA+N V
Sbjct: 224 HLADPWHVN---YASNGV 238
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 125/268 (46%), Gaps = 43/268 (16%)
Query: 18 RQSNEFVRKVGVAD----GGRITMRRTVKSAPQSIW-----YGPDRPKYLGPFSEQTPSY 68
R N R+ VA GGR++ R V A + + PDRP + P +
Sbjct: 19 RVQNATQRRPLVASASPTGGRMSERLVVARAGKEVSSVCEPLPPDRPLWFP--GSAPPEW 76
Query: 69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEA 128
L G PGD+G+D GL +DP+T + E+IHSRWAML G + PE L + G
Sbjct: 77 LDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECLERLGF-IENF 135
Query: 129 VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLD 186
W++AG++ +Y + ++ Q+VLMG+ EG R P ++
Sbjct: 136 SWYEAGSR-------EYFADST--------TLFVAQMVLMGWAEGRRWADLIKPGSVDIE 180
Query: 187 PLYPGGAFD------PLGLADD--------PDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
P YP P GL D P+ L+ KE+KNGRLAM + GF QA
Sbjct: 181 PKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAT 240
Query: 233 VTGKGPIENLYDHIADPVANNAWAYATN 260
T + PIENL H+ADP N ++ T+
Sbjct: 241 YTSQDPIENLMAHLADPGHCNVFSAFTS 268
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 112/235 (47%), Gaps = 33/235 (14%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQ 64
A+ + +TA + R V++G R+TM+ W P S+
Sbjct: 2 ALSMRTLSARTAAPRGFSGRRVAAVSNGSRVTMK-------AGNWL---------PGSD- 44
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
P++L + PG+YG+D L +P + + E EVIH RWAMLG G + E+L
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL------ 98
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W+ A + G + G ++LA + V M EG R G+
Sbjct: 99 -GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAF---EFVAMAAAEGQR------GDA 148
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
+YPGGAFDPLG A D + ELK+KE+KNGRLAM + GF Q TGKGPI
Sbjct: 149 GGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPI 203
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 33/219 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D GL ++PE + E++H RWAML A
Sbjct: 62 GPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAA 119
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + P++L++ G WF AG++ +Y +P ++ Q+ LMG+
Sbjct: 120 GILVPDLLARWGFIDAGFSWFDAGSR-------EYFADP--------WTLFVSQMALMGW 164
Query: 171 VEGYRIGG--GPLGEGLDPLYPGGAFD------PLGLADD--------PDQFAELKVKEL 214
EG R P ++P +P P GL D P+ L+ KE+
Sbjct: 165 AEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 224
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KNGRLAM + GF+ QA+ TG+GPI+NL H+ADP N
Sbjct: 225 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCN 263
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 132/270 (48%), Gaps = 38/270 (14%)
Query: 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
++ + S F+G+ ALR + KV G +T+ + +APQ+ +RP +
Sbjct: 27 ASTKASFFSGR-ALRMT-----KVAAYTNGDMTI--SAVAAPQN-----ERPLWFP--GS 71
Query: 64 QTPSYLTGEFPGDYGWDTAGL------SADPETFAKNRELEVIHSRWAMLGALGCVFPEI 117
Q P +L G PGD+G+D GL +DPET + E++H RWAMLGA G PE
Sbjct: 72 QAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAGIFIPEA 131
Query: 118 LSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFV 171
L+K G+ W AG A F++ L + IL WA +V G V
Sbjct: 132 LTKMGI-LNTPSWTVAGDADYFTD-------KTTLFVIELILFAWAEGRRWADIVNPGCV 183
Query: 172 EGYRIGGGPLGEGLDPLYPGGA-FDPLGLADDPD--QFAELKVKELKNGRLAMFSMFGFF 228
+ G D YPGG FDPLG D + +L+ +E+KNGRLAM ++ G
Sbjct: 184 NVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAMLAVLGAI 243
Query: 229 VQAIVTGKGPIENLYDHIADPVANNAWAYA 258
VQA T GPI+NL H+ DP N +A +
Sbjct: 244 VQANYTHTGPIDNLVAHLVDPGHNTIFALS 273
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 110/219 (50%), Gaps = 33/219 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D GL ++PE + E++H RWAML A
Sbjct: 62 GPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAA 119
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + P++L++ G WF AG++ +Y +P ++ Q+ LMG+
Sbjct: 120 GILVPDLLARWGFIDAGFSWFDAGSR-------EYFADP--------WTLFVSQMALMGW 164
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKEL 214
EG R P ++P YPGG FD P+ L+ KE+
Sbjct: 165 AEGRRWADYLRPGCVDIEPRFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 224
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
KNGRLAM + GF+ QA+ TG+GPI+NL H+ADP N
Sbjct: 225 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCN 263
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 99/203 (48%), Gaps = 36/203 (17%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+PSYL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ +K G+
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI- 119
Query: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPL 181
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 120 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 163
Query: 182 GEGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG F+PL A E K KEL NGRLAM + GF +
Sbjct: 164 CVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT----IEAKEKELANGRLAMLAFLGFVI 219
Query: 230 QAIVTGKGPIENLYDHIADPVAN 252
Q VTGKGP ENL HI+DP N
Sbjct: 220 QHNVTGKGPFENLLQHISDPWHN 242
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 34/226 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D G ++PE+ + E++H RWAML
Sbjct: 65 GPDRPVWFP--GTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVA 122
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + PEIL K G E W+ AG + +Y +P ++ Q+ LMG+
Sbjct: 123 GILIPEILQKWGF-MEEFSWYTAGER-------EYFADP--------WTLFVTQMALMGW 166
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL--ADDPDQFAELKVKEL 214
VEG R P ++P YPGG + G P+ L+ KE+
Sbjct: 167 VEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 226
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
KNGRLAM + GF+ Q + TG+GP++NL+ H+ADP N ++ T+
Sbjct: 227 KNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 272
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 111/213 (52%), Gaps = 33/213 (15%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+TP+YL + PG YG+D L DP + + E++HSR+AM G + PE+L G
Sbjct: 43 KTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLKAFGA 101
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV----------------VL 167
VW++AG + + N + A I A ++
Sbjct: 102 -VNLPVWYEAGKYAQESSPIPF----NTLIALEIFAFNFVEIKRWQDFKKPGSQGEEGSF 156
Query: 168 MGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGF 227
+G +EG+ G G G YPGG FDPLGL+ P + +K++E+KNGRLAM + GF
Sbjct: 157 VG-LEGFFKGTGENG------YPGGVFDPLGLSKGPG-YEAMKLREIKNGRLAMLAFIGF 208
Query: 228 FVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
Q + TGKGPIENL DH+++P+ANN + TN
Sbjct: 209 ASQYLATGKGPIENLLDHLSNPLANN---FTTN 238
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 125/275 (45%), Gaps = 70/275 (25%)
Query: 30 ADGGRITMR---RTVKSAPQSIWY-GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 85
+ GR+ R RT K+AP+ DRP + + P YL G GDYG+D GL
Sbjct: 24 SKSGRVQARFGFRTKKAAPKKFSKPSADRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLG 81
Query: 86 ADPE-----------TFAKN--------------------------------RELEVIHS 102
E AKN RE E+IH
Sbjct: 82 KPVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRECELIHG 141
Query: 103 RWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
RWAML LG + E L+ GV W AG EG YLG P ++ IW
Sbjct: 142 RWAMLATLGALSVEWLT--GV-----TWQDAGKVELVEGS-SYLGQPLPFSISTL--IW- 190
Query: 163 CQVVLMGFVEGYRIGGGPLGEGLDP---LYPGGAF-DPLGLADDPDQFAELKVKELKNGR 218
+V+L+G++E R LDP LYPGG F DPLGLA DP++ A L++ E+K+ R
Sbjct: 191 IEVLLIGYIEFQR------NAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHAR 244
Query: 219 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
LAM GF VQA VTGKGP+ N H++DP+
Sbjct: 245 LAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTT 279
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 127/270 (47%), Gaps = 68/270 (25%)
Query: 30 ADGGRITMRRTV-KSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
++ GRI R K AP+ SI PDRP + + P YL G GDYG+D GL
Sbjct: 23 SNAGRIQARFGFGKKAPKKSIKTIPDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGRP 80
Query: 88 PE-----------TFAKN--------------------------------RELEVIHSRW 104
E AKN RE E+IH RW
Sbjct: 81 AEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRW 140
Query: 105 AMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
AML LG + E L+ GV W AG EG YLG P +++ I +
Sbjct: 141 AMLATLGALSVEWLT--GV-----TWQDAGKVELVEGS-SYLGQPLPFSITTLILI---E 189
Query: 165 VVLMGFVEGYRIGGGPLGEGLDP---LYPGGAF-DPLGLADDPDQFAELKVKELKNGRLA 220
V+++G++E R LDP LYPGG F DPLGLA DP++ A L++ E+K+ RLA
Sbjct: 190 VLVIGYIEFQR------NAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLA 243
Query: 221 MFSMFGFFVQAIVTGKGPIENLYDHIADPV 250
M + GF VQA VTGKGP+ N H++DP+
Sbjct: 244 MVAFLGFAVQAWVTGKGPLNNWATHLSDPL 273
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 34/226 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D G ++PE+ + E++H RWAML
Sbjct: 62 GPDRPVWFP--GTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVA 119
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + PEIL K G E W+ AG + +Y +P ++ Q+ LMG+
Sbjct: 120 GILIPEILQKWGF-MEEFSWYTAGER-------EYFADP--------WTLFVTQMALMGW 163
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL--ADDPDQFAELKVKEL 214
VEG R P ++P YPGG + G P+ L+ KE+
Sbjct: 164 VEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 223
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
KNGRLAM + GF+ Q + TG+GP++NL+ H+ADP N ++ T+
Sbjct: 224 KNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 269
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 127/273 (46%), Gaps = 68/273 (24%)
Query: 30 ADGGRITMRRTV-KSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87
++ GRI R K AP+ SI PDRP + + P YL G GDYG+D GL
Sbjct: 23 SNAGRIQARFGFGKKAPKKSIKTIPDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGRP 80
Query: 88 PE-----------TFAKN--------------------------------RELEVIHSRW 104
E AKN RE E+IH RW
Sbjct: 81 AEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRW 140
Query: 105 AMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
AML LG + E L+ GV W AG EG YLG P +++ I +
Sbjct: 141 AMLATLGALSVEWLT--GV-----TWQDAGKVELVEGS-SYLGQPLPFSITTLILI---E 189
Query: 165 VVLMGFVEGYRIGGGPLGEGLDP---LYPGGAF-DPLGLADDPDQFAELKVKELKNGRLA 220
V+++G++E R LDP LYPGG F DPLGLA DP++ A L++ E+K+ RLA
Sbjct: 190 VLVIGYIEFQR------NAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLA 243
Query: 221 MFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
M + GF VQA VTGKGP+ N H++DP+
Sbjct: 244 MVAFLGFAVQAWVTGKGPLNNWATHLSDPLHTT 276
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 110/202 (54%), Gaps = 35/202 (17%)
Query: 78 GWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV-- 129
G+D GLS DPE F + + L EV + R+AMLGA+G + PEI K G+ E
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGGPLGE-- 183
WF+ G I G Y +P ++ ++ LMGF E R+ G +G+
Sbjct: 60 WFQTGV-IPPAGSYTYWADP--------YTLFVFEMALMGFAEHRRLQDWYNPGSMGKQY 110
Query: 184 --GL--------DPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GL DP YPGG F +PLG D ELK+KE+KNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 233 VTGKGPIENLYDHIADPVANNA 254
VTG GP +NL DH+ADPV NN
Sbjct: 171 VTGVGPFQNLLDHLADPVNNNV 192
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 110/202 (54%), Gaps = 35/202 (17%)
Query: 78 GWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV-- 129
G+D GLS DPE F + + L EV + R+AMLGA+G + PEI K G+ E
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGGPLGE-- 183
WF+ G I G Y +P ++ ++ LMGF E R+ G +G+
Sbjct: 60 WFQTGV-IPPAGSYTYWADP--------YTLFVFEMALMGFAEHRRLQDWYNPGSMGKQY 110
Query: 184 --GL--------DPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GL DP YPGG F +PLG D ELK+KE+KNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 233 VTGKGPIENLYDHIADPVANNA 254
VTG GP +NL DH+ADPV NN
Sbjct: 171 VTGVGPFQNLLDHLADPVNNNV 192
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 114/226 (50%), Gaps = 33/226 (14%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D GL ++PE + E++H RWAML A
Sbjct: 23 GPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAA 80
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + P++L++ G WF AG++ +Y +P ++ Q+ LMG+
Sbjct: 81 GILVPDLLARWGFIDAGFSWFDAGSR-------EYFADP--------WTLFVSQMALMGW 125
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGA-FDPLGLAD-DPDQFAELKVKEL 214
EG R P ++P YPGG FD P+ L+ KE+
Sbjct: 126 AEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEI 185
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
KNGRLAM + GF+ QA+ TG+GPI+NL H+ADP N ++ T+
Sbjct: 186 KNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 231
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 119/257 (46%), Gaps = 38/257 (14%)
Query: 1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
+ +SA +S F GQ++ R + T RR V++ + W P P
Sbjct: 13 LLSSASLKSTFLGQSSTRLARA------------PTTRRNVRAEAKGEWL-PGLP----- 54
Query: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+L+K
Sbjct: 55 ----SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTK 110
Query: 121 NGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGFVEGYR 175
G+ W+ AG A F+ ++ L H I + V + YR
Sbjct: 111 IGL-IDAPQWYDAGKATYFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFKSYR 169
Query: 176 IGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
+ G YPG F+PL + E K KEL NGRLAM + GF VQ VT
Sbjct: 170 LPSDECG------YPGSVFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQ 219
Query: 236 KGPIENLYDHIADPVAN 252
KGP +NL H++DP N
Sbjct: 220 KGPFDNLLQHLSDPWHN 236
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 34/225 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DP+T + E+IHSRWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PE L + G W+ AG++ +Y + ++ Q+VLMG+
Sbjct: 121 IIIPECLERLGF-IENFSWYDAGSR-------EYFADST--------TLFVAQMVLMGWA 164
Query: 172 EGYRIGG--GPLGEGLDPLYPGGAFD------PLGLADD--------PDQFAELKVKELK 215
EG R P ++P YP P GL D P+ L+ KE+K
Sbjct: 165 EGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIK 224
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
NGRLAM + GF QA T + PIENL H+ADP N ++ T+
Sbjct: 225 NGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 34/225 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DP+T + E+IHSRWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PE L + G W+ AG++ +Y + ++ Q+VLMG+
Sbjct: 121 IIIPECLERLGF-IENFSWYDAGSR-------EYFADST--------TLFVAQMVLMGWA 164
Query: 172 EGYRIGG--GPLGEGLDPLYPGGAFD------PLGLADD--------PDQFAELKVKELK 215
EG R P ++P YP P GL D P+ L+ KE+K
Sbjct: 165 EGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIK 224
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
NGRLAM + GF QA T + PIENL H+ADP N ++ T+
Sbjct: 225 NGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 123/272 (45%), Gaps = 68/272 (25%)
Query: 33 GRITMR----RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
GRI R K+AP+ + GP + L + P +L G GDYG+D GL
Sbjct: 27 GRIQARFGFGSKKKAAPKKVSKGPSTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPA 86
Query: 89 E-----------TFAKN--------------------------------RELEVIHSRWA 105
E AKN RE E+IH RWA
Sbjct: 87 EYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWA 146
Query: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
ML LG + E L+ GV W AG EG YLG P ++ IW +V
Sbjct: 147 MLATLGALSVEWLT--GV-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEV 195
Query: 166 VLMGFVEGYRIGGGPLGEGLDP---LYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAM 221
+++G++E R LDP LYPGG+ FDPLGLA DP++ A L++ E+K+ RLAM
Sbjct: 196 LVIGYIEFQR------NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAM 249
Query: 222 FSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
GF VQA TGKGP+ N H++DP+
Sbjct: 250 VGFLGFAVQAAATGKGPLNNWATHLSDPLHTT 281
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 101/204 (49%), Gaps = 35/204 (17%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YL GE GDYGWD GL ADP R+ E++H+RWAMLG G + E++ +
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVKPD---- 97
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPL 181
F E GL P ++ + A + +LM +VE R G +
Sbjct: 98 ----------VYFYEAGLPQ-NLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSV 146
Query: 182 GEGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
E DP+ YPGG FDPLG + EL+ KE+KNGRLAM + GF +
Sbjct: 147 NE--DPIFKGNKVPNPEMGYPGGIFDPLGFSK--GNLKELQTKEIKNGRLAMVAYMGFVL 202
Query: 230 QAIVTGKGPIENLYDHIADPVANN 253
QA TGKGP+ L H+++P NN
Sbjct: 203 QAQATGKGPLAALSAHLSNPFGNN 226
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 99/203 (48%), Gaps = 36/203 (17%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+PSYL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ +K G+
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI- 119
Query: 125 FGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPL 181
W+ AG A+ F+ ++ + +L +VE R P
Sbjct: 120 INAPQWYDAGKAEYFASSS----------------TLFVIEFILFHYVEIRRWQDIKNPG 163
Query: 182 GEGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
DP+ YPGG F+PL A E K KEL NGRLAM + GF +
Sbjct: 164 CVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT----IEAKEKELANGRLAMLAFLGFVI 219
Query: 230 QAIVTGKGPIENLYDHIADPVAN 252
Q VTGKGP +NL HI+DP N
Sbjct: 220 QHNVTGKGPFDNLLQHISDPWHN 242
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 123/266 (46%), Gaps = 72/266 (27%)
Query: 32 GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-- 89
GG+ ++++K + PDRP + + P YL G GDYG+D GL E
Sbjct: 35 GGKKAPKKSIKPS------TPDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGKPAEYL 86
Query: 90 ---------TFAKN--------------------------------RELEVIHSRWAMLG 108
AKN RE E+IH RWAML
Sbjct: 87 QFELDSLDQNLAKNLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLA 146
Query: 109 ALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 168
LG + E L+ GV W AG EG YLG P SI A+ + V++
Sbjct: 147 TLGALSVEWLT--GV-----TWQDAGKVELVEGS-SYLGQPLPF---SITALIWIEAVII 195
Query: 169 GFVEGYRIGGGPLGEGLDP---LYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSM 224
G++E R LDP LYPGG F DPLGLA DP++ A L++ E+K+ RLAM +
Sbjct: 196 GYIEFQR------NAELDPEKRLYPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAF 249
Query: 225 FGFFVQAIVTGKGPIENLYDHIADPV 250
GF VQA VTGKGP+ N H++DP+
Sbjct: 250 LGFAVQAWVTGKGPLNNWATHLSDPL 275
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ +K G+
Sbjct: 63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI- 121
Query: 125 FGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQ----VVLMGFVEGYRIGGG 179
W+ AG Q F+ ++ L H I + V + Y + G
Sbjct: 122 INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKG 181
Query: 180 PLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
+G YPGG F+PL A P Q E K KEL NGRLAM + GF VQ VTGKGP
Sbjct: 182 EVG------YPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 231
Query: 240 ENLYDHIADPVAN 252
ENL H++DP N
Sbjct: 232 ENLLQHLSDPWHN 244
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 34/226 (15%)
Query: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGAL 110
GPDRP + P +L G PGD+G+D G ++PE+ + E++H RWAML
Sbjct: 65 GPDRPVWFP--GTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVA 122
Query: 111 GCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF 170
G + PEIL K G E W+ AG + +Y +P ++ Q+ LMG+
Sbjct: 123 GILIPEILQKWGF-MEEFSWYTAGER-------EYFADP--------WTLFVTQMALMGW 166
Query: 171 VEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL--ADDPDQFAELKVKEL 214
VEG R P ++P YPGG + G P+ L+ KE+
Sbjct: 167 VEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEI 226
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260
KNGRLAM + GF+ Q + TG+GP+ NL+ H+ADP N ++ T+
Sbjct: 227 KNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTS 272
>gi|169195|gb|AAA33701.1| Major Cab protein [Petunia x hybrida]
Length = 62
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 204 DQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 263
+ FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVP
Sbjct: 1 EAFAELKVKEIKNGRLAAFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVP 60
Query: 264 GK 265
GK
Sbjct: 61 GK 62
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 104/191 (54%), Gaps = 35/191 (18%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P YLTGE GD G+D AGL+ADP TF + + EV H R +ML +GC+ PE+L
Sbjct: 470 PRYLTGEAFGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------- 522
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL---G 182
G WF QI+ + +D+ + A+ A QVV +E +R GG L
Sbjct: 523 GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDE 564
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
E +D YPG FDPL L + K E+KNGRLAM MFG VQ+ VTGK PI NL
Sbjct: 565 ETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNL 617
Query: 243 YDHIADPVANN 253
DH++ P+ N
Sbjct: 618 IDHLSSPLTAN 628
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 37/201 (18%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L
Sbjct: 658 EPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL----- 712
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
G+ WF+AG + L + + + E +R GG +
Sbjct: 713 --GKGAWFEAGDSVDG------------------LKLGFIAMAIAAPTEYWRGHGGFNWQ 752
Query: 184 --GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
LD YPG FDPL L D K E+KNGRLA+ ++ G Q + TG+ P+ N
Sbjct: 753 KGDLDRSYPG--FDPLNLTTD-----YTKAAEVKNGRLALTAVAGLTAQYLATGESPLAN 805
Query: 242 LYDHIADPVANNAWAYATNFV 262
L H+A+PV N ATN V
Sbjct: 806 LAAHLANPVGAN---IATNLV 823
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 117/256 (45%), Gaps = 55/256 (21%)
Query: 8 QSAFAGQTALRQSNEFVRKVGVAD----GGRITM----RRTVKSAPQSIWYGPDRPKYLG 59
QS G++ L +E + + GG + M R +S + +W+ P L
Sbjct: 45 QSHLTGKSPLVNLSEHLSNPASVNILTGGGSVAMFYASGRKTQSEDRPLWF----PNTLA 100
Query: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
P S+LTGE+ GD G+D AGL+ADPETF + R EV H R AML +G + P+ L
Sbjct: 101 P------SWLTGEYFGDRGFDPAGLAADPETFERMRIAEVYHGRLAMLAVVGALVPDYL- 153
Query: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG 179
G+ +W++A N +AI+ + G +
Sbjct: 154 ------GKGIWYEAAQ--------------NAGIGVKEVAIFTAAYGVFEVARGVK---- 189
Query: 180 PLGEGLDP--LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
E DP +YPG FDPL L D K E+KNGRLA+ ++ GF VQ V G
Sbjct: 190 ---ENSDPTTVYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS 239
Query: 238 PIENLYDHIADPVANN 253
P+ NL DH+ P+ N
Sbjct: 240 PLANLADHLQQPLQRN 255
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 34/192 (17%)
Query: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
+ P++LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L
Sbjct: 284 EPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL----- 338
Query: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE 183
G+ WF+AG + L + + + E +R GG +
Sbjct: 339 --GKGAWFEAGDSVDG------------------LKLGFIAMAIAAPTEYWRGHGGFNWQ 378
Query: 184 --GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
LD YPG FDPL L D K E+KNGRLA+ ++ G Q + TG+ P+ N
Sbjct: 379 KGDLDRSYPG--FDPLNLTTD-----YTKAAEVKNGRLALTAVAGLTAQYLATGESPLAN 431
Query: 242 LYDHIADPVANN 253
L H+A+P+ N
Sbjct: 432 LSAHLANPIGAN 443
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 183 EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
+G D YPG FDPL L D+ E K+KE+KNGRLAM +M G VQ+ +TGK P+ NL
Sbjct: 5 DGPDQSYPG--FDPLRLTDE-----ETKLKEIKNGRLAMTAMLGLEVQSHLTGKSPLVNL 57
Query: 243 YDHIADPVANN 253
+H+++P + N
Sbjct: 58 SEHLSNPASVN 68
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 107/223 (47%), Gaps = 34/223 (15%)
Query: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DP+T + E+IHSRWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
+ PE L + G W+ AG++ +Y + ++ Q+VLMG+
Sbjct: 121 IIIPECLERLGF-IENFSWYDAGSR-------EYFADST--------TLFVAQMVLMGWA 164
Query: 172 EGYRIGG--GPLGEGLDPLYPGGAFD------PLGLADD--------PDQFAELKVKELK 215
EG R P ++P YP P GL D P+ L+ KE+K
Sbjct: 165 EGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIK 224
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258
NGRLAM + GF QA T + PIENL H+ADP N ++ +
Sbjct: 225 NGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSVS 267
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 101/190 (53%), Gaps = 37/190 (19%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P+YLTGEFPGD G+D AGLSADPETF + R E+IH R AML +G + P+ L
Sbjct: 95 PAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFL------- 147
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGL 185
G+ WF+A A G+D I Q ++G+ + G G L +
Sbjct: 148 GKGNWFEAPAI----AGID---------------IGDVQQFILGYGV-FEFGRG-LNKSS 186
Query: 186 DP--LYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243
+P +YPG FDPL L D K E+KNGRLA+ +M GF VQ V G P+ NL
Sbjct: 187 NPAAIYPG--FDPLNLTSD-----YTKEAEIKNGRLALTAMLGFEVQRHVVGGSPLANLS 239
Query: 244 DHIADPVANN 253
DH+ P+ N
Sbjct: 240 DHLQQPLKFN 249
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 115/247 (46%), Gaps = 33/247 (13%)
Query: 5 AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQ 64
A+ + +TA + R V++G R+TM+ W P S+
Sbjct: 2 ALSMRTLSARTAAPRGFSGRRVAAVSNGSRVTMK-------AGNWL---------PGSD- 44
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
P++L + PG+YG+D L +P + + E EVIH RWAMLG G + E+L
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL------ 98
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEG 184
G W+ A + G + G ++LA + V M EG R
Sbjct: 99 -GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAF---EFVAMAAAEGQRR------RC 148
Query: 185 LDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 244
PGGAFDPLG A D + ELK+KE+KNGRLAM + GF Q TGK P+ L +
Sbjct: 149 RRRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKAPLAALGE 208
Query: 245 HIADPVA 251
H+A+P A
Sbjct: 209 HLANPWA 215
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 115/243 (47%), Gaps = 47/243 (19%)
Query: 36 TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
+ RR+V S S RP +L P++L GE PGD+G+D GL A+ E+ +
Sbjct: 17 SARRSVVSKASS------RPLWLP--GSTPPAHLKGELPGDFGFDPLGLGANAESLKWFK 68
Query: 96 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
E E++H RWAM G + EI+ + W+ AG ++ S G
Sbjct: 69 ESELVHCRWAMAAVAGILVQEIVRPD------VFWYNAGKEVESPLG------------- 109
Query: 156 SILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGLAD 201
L + A + LM +VE R P DP+ YPGG F P
Sbjct: 110 -PLGLLAVEFFLMHWVELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGGVFAPF---- 164
Query: 202 DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 261
P AELKVKE+KNGRLAM + GF + A VTGKGPI L +H+ADP ++ A
Sbjct: 165 IPGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPFGTTIFSKAA-V 223
Query: 262 VPG 264
VPG
Sbjct: 224 VPG 226
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 109/202 (53%), Gaps = 35/202 (17%)
Query: 78 GWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV-- 129
G+D GLS DPE F + + L EVI+ R+AMLGA G + PEI K G+ E
Sbjct: 1 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI----GGGPLGE-- 183
WF+ G I G Y +P ++ ++ LMGF E R G +G+
Sbjct: 60 WFQTGV-IPPAGSYTYWADP--------YTLFVFEMALMGFAEHRRFQDWYNPGSMGKQY 110
Query: 184 --GLD--------PLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232
GL+ P YPGG F +PLG D ELK+KE+KNGRLAM ++ G+F+Q +
Sbjct: 111 FLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGL 170
Query: 233 VTGKGPIENLYDHIADPVANNA 254
VTG GP +NL DH+ADPV NN
Sbjct: 171 VTGVGPFQNLLDHLADPVNNNV 192
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 112/203 (55%), Gaps = 35/203 (17%)
Query: 75 GDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA 128
GD+G+D GLS DPE F + + L E+I+ R+AMLGA+G + PEIL K G+ E
Sbjct: 1 GDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 129 V--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLG 182
WF+ G I G +Y + ++ ++ LMGF E R G +G
Sbjct: 60 ALPWFQTGV-IPPAGTYNYWADG--------YTLFVLEMALMGFAEHRRFQDWAKPGSMG 110
Query: 183 E--------GL----DPLYPGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV 229
+ GL DP YPGG F +PLG D ELK+KE+KNGRLAM ++ G+F+
Sbjct: 111 KQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFI 170
Query: 230 QAIVTGKGPIENLYDHIADPVAN 252
Q +VTG GP +NL DH+ADP N
Sbjct: 171 QGLVTGVGPFQNLLDHLADPWHN 193
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 119/246 (48%), Gaps = 42/246 (17%)
Query: 35 ITMRRTVKSAPQSIW-YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
+ R + +SA +S+ RP +L P++L G+ PGD+G+D GL A+ E+
Sbjct: 9 VAARPSARSARRSVVAKASSRPLWLP--GSTPPAHLKGDLPGDFGFDPLGLGANAESLKW 66
Query: 94 NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
+E E++HSRWAM G + EI+ + W+ AG ++ S G
Sbjct: 67 FKESELVHSRWAMAAVAGILVQEIVRPD------VFWYNAGKEVESPLG----------- 109
Query: 154 AQSILAIWACQVVLMGFVEGYRIGG--GPLGEGLDPL------------YPGGAFDPLGL 199
L + A + LM +VE R P DP+ YPGG F P
Sbjct: 110 ---PLGLLAVEFFLMHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYPGGVFAPF-- 164
Query: 200 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 259
P AELKVKE+KNGRLAM + GF + A VTGKGPI L +H+ADP ++ A
Sbjct: 165 --IPGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFSKAA 222
Query: 260 NFVPGK 265
VPG+
Sbjct: 223 -VVPGQ 227
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+P+YL G PGD G+D L+ DPE + E+++ RWAMLG G + PE+ ++ G+
Sbjct: 62 SPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGI- 120
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG 182
W+ AG Q +Y S ++ + +L +VE R P
Sbjct: 121 INVPKWYDAGKQ-------EYFA--------SSSTLFVIEFILFHYVEIRRWQDIKNPGS 165
Query: 183 EGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 230
DP+ YPGG F+PL A AE K KEL NGRLAM + GF VQ
Sbjct: 166 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----AEAKEKELANGRLAMLAFLGFIVQ 221
Query: 231 AIVTGKGPIENLYDHIADPVAN 252
VTGKGP +NL H++DP N
Sbjct: 222 HNVTGKGPFDNLLQHLSDPWHN 243
>gi|157965827|gb|ABW06950.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 610
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 37/192 (19%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P+YLTGEFP D G+D AGL+ADP+ + + R EV + R AML +GCV+PE+L
Sbjct: 259 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELL------- 311
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLG--- 182
G VWF+ ++ D+ A+ + QVV +E +R G G G
Sbjct: 312 GNGVWFEVWNKV------DFYR----------FALISLQVV--APLEYWR-GNGGFGWDG 352
Query: 183 -EGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241
E D YPG FDP L + K E+KNGRLAM MFG VQ+ VT +GP+ N
Sbjct: 353 EEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQSHVTAQGPVAN 405
Query: 242 LYDHIADPVANN 253
L +H+ P+A N
Sbjct: 406 LMEHLRHPLAAN 417
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 34/190 (17%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P++LTGE+P D G+D L+ADP +A+ R EV H+R +ML +G + PE+L
Sbjct: 76 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL------- 128
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE-- 183
G+ WF+AG + + + + + E +R GG +
Sbjct: 129 GKGAWFEAGNSVDG------------------IKLGFIAMAIAAPTEYWRGNGGFNWDKG 170
Query: 184 GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243
D YPG FDPL L D K E+KNGRLAM + G Q + TG+ P+ NL
Sbjct: 171 AADRSYPG--FDPLKLTTD-----YTKAAEIKNGRLAMAGLLGLTFQYLATGESPLANLA 223
Query: 244 DHIADPVANN 253
H+A+PV N
Sbjct: 224 AHLANPVGTN 233
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 34/190 (17%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
P++LTGE+P D G+D L+ADP +A+ R EV H+R +ML +G + PE+L
Sbjct: 447 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL------- 499
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGE-- 183
G+ WF+AG + + + + + E +R GG +
Sbjct: 500 GKGAWFEAGNSVDG------------------IKLGFIAMAIAAPTEYWRGNGGFNWDKG 541
Query: 184 GLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243
D YPG FDPL L D K E+KNGRLAM + G Q + TG+ P+ NL
Sbjct: 542 AADRSYPG--FDPLKLTTD-----YTKAAEIKNGRLAMAGLLGLTFQYLATGESPLANLA 594
Query: 244 DHIADPVANN 253
H+A+PV N
Sbjct: 595 AHLANPVGAN 604
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 253
K E+KNGRLA+ +M G VQ VTG P+ NL +H+ P+ +N
Sbjct: 2 KEAEIKNGRLALTAMLGLEVQRHVTGVSPLVNLVEHVKHPLGHN 45
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 154 AQSILAIWACQV-VLMGFVEGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDQFAELKV 211
A+S++ W + G +G G L YP FDPL LA DP +A ++V
Sbjct: 47 AESVMHQWPVAMFAATGHKDGVWFPGATPPAHLTGEYPADRGFDPLSLAADPTVYARMRV 106
Query: 212 KELKNGRLAMFSMFGFFVQAIVTGKG 237
E+ + RL+M ++ G V ++ GKG
Sbjct: 107 SEVFHARLSMLAIVGAIVPEVL-GKG 131
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 98/202 (48%), Gaps = 34/202 (16%)
Query: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
+P+YL G PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ +K G+
Sbjct: 62 SPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI- 120
Query: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG 182
W+ AG +Y + + ++ + +L +VE R P
Sbjct: 121 INAPQWYDAGKS-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGS 165
Query: 183 EGLDPL------------YPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQ 230
DP+ YPG F+PL A E K KEL NGRLAM + GF VQ
Sbjct: 166 VNQDPIFKQYSLPQHECGYPGSVFNPLNFAPT----LEAKEKELANGRLAMLAFLGFIVQ 221
Query: 231 AIVTGKGPIENLYDHIADPVAN 252
VTGKGP ENL H++DP N
Sbjct: 222 HNVTGKGPFENLLQHLSDPWHN 243
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,806,705,492
Number of Sequences: 23463169
Number of extensions: 222156330
Number of successful extensions: 414739
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 295
Number of HSP's that attempted gapping in prelim test: 408313
Number of HSP's gapped (non-prelim): 2757
length of query: 265
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 125
effective length of database: 9,074,351,707
effective search space: 1134293963375
effective search space used: 1134293963375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)