Query 024579
Match_columns 265
No_of_seqs 249 out of 1176
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 5E-82 1.1E-86 574.4 16.9 259 4-265 2-262 (262)
2 PLN00187 photosystem II light- 100.0 5.5E-68 1.2E-72 486.9 15.6 237 4-259 3-285 (286)
3 PLN00171 photosystem light-ha 100.0 1.6E-67 3.5E-72 489.0 16.0 217 42-258 96-322 (324)
4 PLN00098 light-harvesting comp 100.0 1.7E-64 3.7E-69 460.7 15.6 197 46-260 54-266 (267)
5 PLN00097 photosystem I light h 100.0 7.1E-64 1.5E-68 451.2 14.8 190 50-256 40-244 (244)
6 PLN00101 Photosystem I light-h 100.0 2.1E-63 4.5E-68 449.9 13.8 191 46-258 45-249 (250)
7 PLN00099 light-harvesting comp 100.0 1.5E-62 3.2E-67 443.3 14.8 194 51-258 41-236 (243)
8 PLN00147 light-harvesting comp 100.0 2.6E-62 5.6E-67 443.4 13.8 196 47-259 38-250 (252)
9 PLN00048 photosystem I light h 100.0 5.8E-62 1.3E-66 443.5 14.9 203 46-260 34-261 (262)
10 PLN00100 light-harvesting comp 100.0 2.3E-58 5E-63 415.3 13.3 175 51-257 32-208 (246)
11 PLN00170 photosystem II light- 100.0 7.8E-53 1.7E-57 381.5 13.1 160 64-243 65-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 3.9E-43 8.4E-48 296.6 7.4 149 65-232 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1.5E-42 3.3E-47 307.6 11.3 161 60-240 42-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 3.8E-35 8.3E-40 259.2 10.9 144 79-240 47-199 (202)
15 PLN00101 Photosystem I light-h 99.6 6.4E-16 1.4E-20 140.7 6.2 55 185-239 66-121 (250)
16 PLN00098 light-harvesting comp 99.6 7.6E-16 1.7E-20 141.3 6.5 57 185-241 75-132 (267)
17 PLN00147 light-harvesting comp 99.5 5.3E-15 1.2E-19 134.8 6.0 54 184-237 57-111 (252)
18 PLN00170 photosystem II light- 99.5 1.8E-14 3.9E-19 131.4 5.7 53 186-238 71-124 (255)
19 PLN00097 photosystem I light h 99.5 3E-14 6.4E-19 129.4 5.9 54 185-238 57-111 (244)
20 PLN00171 photosystem light-ha 99.5 2.8E-14 6.1E-19 133.6 5.7 55 184-238 122-177 (324)
21 PLN00025 photosystem II light 99.5 5.1E-14 1.1E-18 129.0 5.7 53 185-237 66-119 (262)
22 PLN00100 light-harvesting comp 99.5 7E-14 1.5E-18 126.9 5.6 51 184-234 47-98 (246)
23 PLN00048 photosystem I light h 99.4 2.8E-14 6.2E-19 130.8 2.1 52 71-122 187-238 (262)
24 PLN00099 light-harvesting comp 99.4 2E-13 4.4E-18 124.0 5.2 53 183-235 55-108 (243)
25 PLN00089 fucoxanthin-chlorophy 99.4 8.9E-14 1.9E-18 123.9 2.5 52 71-122 153-205 (209)
26 PLN00187 photosystem II light- 99.4 2.9E-13 6.2E-18 125.4 4.8 52 185-236 65-160 (286)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1.3E-12 2.8E-17 110.4 6.0 51 185-236 5-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.2 1.5E-11 3.2E-16 109.2 3.1 45 188-232 41-87 (202)
29 PLN00084 photosystem II subuni 98.2 1.3E-06 2.7E-11 75.9 3.5 49 204-252 130-179 (214)
30 PHA02337 putative high light i 98.1 2.7E-06 6E-11 55.5 3.1 28 211-238 4-31 (35)
31 PLN00014 light-harvesting-like 97.6 5E-05 1.1E-09 68.7 3.1 37 209-245 159-195 (250)
32 PHA02337 putative high light i 97.0 0.00015 3.2E-09 47.5 -0.3 29 94-122 2-30 (35)
33 PLN00014 light-harvesting-like 94.1 0.01 2.3E-07 54.0 -0.8 29 95-123 160-188 (250)
34 PLN00084 photosystem II subuni 88.8 0.11 2.4E-06 45.6 -0.3 35 89-123 130-165 (214)
35 PLN02449 ferrochelatase 55.0 8.8 0.00019 38.8 2.4 21 219-239 463-483 (485)
36 PHA00003 B internal scaffoldin 38.5 56 0.0012 26.8 4.2 42 179-223 34-76 (120)
37 PF02304 Phage_B: Scaffold pro 21.0 60 0.0013 26.6 1.5 44 180-226 32-76 (117)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=5e-82 Score=574.39 Aligned_cols=259 Identities=85% Similarity=1.443 Sum_probs=234.4
Q ss_pred hhhhhhhhhhhhhhccchhhhhhhccccccceeeeccccCC--CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q 024579 4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSA--PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 81 (265)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDP 81 (265)
+++++++|+|+....+.+...+ ..+.+|++||++.... +.+.||++||++|||||+.++|+||||++||||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDP 78 (262)
T PLN00025 2 MALSSTAFAGQAALKPPNELSR---KVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDT 78 (262)
T ss_pred chhhhhhhhccccccCCcccch---hccccchhhchhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCc
Confidence 3456789999987654444433 2355788888743222 5678999999999999987899999999999999999
Q ss_pred CCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhhhhcccccccCCCcccCCCChhhHHHHHHHHH
Q 024579 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIW 161 (265)
Q Consensus 82 LGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~ 161 (265)
|||++||++++||||+|||||||||||++||++||+++..|++|+++.||++|.+++++++++|+++|.++++|++.+++
T Consensus 79 lGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~ 158 (262)
T PLN00025 79 AGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 158 (262)
T ss_pred cccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHH
Confidence 99999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhh
Q 024579 162 ACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241 (265)
Q Consensus 162 ~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~n 241 (265)
++|+++||++|.+|+.+.+.++..|+.||||+||||||++|+++++++|+||||||||||+||+||++|+++||+||++|
T Consensus 159 ~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlen 238 (262)
T PLN00025 159 ACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238 (262)
T ss_pred HHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHH
Confidence 99999999999999987776666678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCcCCCcccccccCCCCC
Q 024579 242 LYDHIADPVANNAWAYATNFVPGK 265 (265)
Q Consensus 242 L~~hladP~~~n~~~~~~~~~~~~ 265 (265)
|.+||+||+|||+|+++++|+|++
T Consensus 239 L~~hladP~~~n~~~~~~~~~~~~ 262 (262)
T PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262 (262)
T ss_pred HHHHhcCccccchhhhhhhcCCCC
Confidence 999999999999999999999985
No 2
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=5.5e-68 Score=486.86 Aligned_cols=237 Identities=38% Similarity=0.629 Sum_probs=189.2
Q ss_pred hhhhhhhhhhhhhhccchhhhhhhccc--cccceeeeccccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q 024579 4 SAIQQSAFAGQTALRQSNEFVRKVGVA--DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 81 (265)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDP 81 (265)
++++.|+|+|+...+..+...+.+... +..|.+. .+....++||++||++|+ |. .++|+||||++||||||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~w~-p~-~~~P~~LdGslpGD~GfDp 77 (286)
T PLN00187 3 AAAAASSFMGTRVPDVASNSGRIVARFGFGKKKKAA---KKAKKKSSKVGADRPLWF-PG-AKAPEWLDGSLVGDYGFDP 77 (286)
T ss_pred ccccchhhhhhhhcccccCccchhhhhccCcccccC---CccccCccCCCCCccccC-CC-CCCcccccCCCCCcCCCCc
Confidence 345677888876654322222111111 1112221 111224679999999999 55 6999999999999999999
Q ss_pred CCcCCChhH-------------------------------------------HhhhHHHHHhhcceeeecccchhhhhhh
Q 024579 82 AGLSADPET-------------------------------------------FAKNRELEVIHSRWAMLGALGCVFPEIL 118 (265)
Q Consensus 82 LGLs~dpe~-------------------------------------------~~~~ReaELkHGR~AMLA~~G~lvpE~l 118 (265)
|||++|||. |+||||+|||||||||||++||++||++
T Consensus 78 lgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll 157 (286)
T PLN00187 78 FGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEAL 157 (286)
T ss_pred ccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhc
Confidence 999999986 6999999999999999999999999998
Q ss_pred hcCCccccchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCC-CCCC
Q 024579 119 SKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPL 197 (265)
Q Consensus 119 ~~~G~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~-FDPL 197 (265)
. |+ .|+++|.+.+.++ .+|+++|..+ .+.+++++|+++||++|.+|..+. +..+..||||. ||||
T Consensus 158 ~--G~-----~W~~aG~~~~~~g-~~y~g~~~p~---~~~~l~~iqvllmG~~E~~R~~~~---~~~~~~yPGg~~FDPl 223 (286)
T PLN00187 158 T--GV-----TWQDAGKVELVDG-SSYLGQPLPF---SITTLIWIEVLVIGYIEFQRNAEL---DPEKRLYPGGKFFDPL 223 (286)
T ss_pred c--CC-----ccccccccccccc-ccccccccch---hHHHHHHHHHHHHHHHHhhhccCC---CCCCCCCCcccccccc
Confidence 5 33 5999997665554 4688877432 456778899999999999998652 22356899997 9999
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccccc
Q 024579 198 GLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 259 (265)
Q Consensus 198 gl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 259 (265)
||.+|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||+||||++...
T Consensus 224 Gl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 224 GLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred ccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999987543
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.6e-67 Score=489.03 Aligned_cols=217 Identities=52% Similarity=0.921 Sum_probs=192.1
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcC
Q 024579 42 KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 121 (265)
Q Consensus 42 ~~~~~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~ 121 (265)
.+++.+.||++||++||||++.++|+||||++|||||||||||++||++++||||+|||||||||||++||++||++++.
T Consensus 96 ~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~ 175 (324)
T PLN00171 96 KARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLF 175 (324)
T ss_pred hhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccC
Confidence 45667899999999999987668999999999999999999999999999999999999999999999999999999875
Q ss_pred C-ccccchhhhhcccccccCCCcccCCCChhh--HHHHHHHHHHHHHHHHHhhhceeecCC----CCC--CCCCCCCCCC
Q 024579 122 G-VKFGEAVWFKAGAQIFSEGGLDYLGNPNLI--HAQSILAIWACQVVLMGFVEGYRIGGG----PLG--EGLDPLYPGG 192 (265)
Q Consensus 122 G-~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~--~~q~i~~i~~~q~~l~g~~E~~r~~~~----p~g--~~~d~~yPG~ 192 (265)
| +.+.+++||++|...++...++|++.|... ..|.+..++++|+++|+.+|.+|+.+. +.+ ...|..||||
T Consensus 176 g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG 255 (324)
T PLN00171 176 GAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 255 (324)
T ss_pred CccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcc
Confidence 4 457778999999766777778888888643 347888899999999999999998752 111 1125679999
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCccccc
Q 024579 193 A-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258 (265)
Q Consensus 193 ~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~ 258 (265)
. |||||+.+|+++++++|++|||||||||+||+||++|+++||++|++||.+|++||+|||++++.
T Consensus 256 ~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~ 322 (324)
T PLN00171 256 ALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322 (324)
T ss_pred cCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHh
Confidence 8 99999999999999999999999999999999999999999999999999999999999998764
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.7e-64 Score=460.66 Aligned_cols=197 Identities=42% Similarity=0.779 Sum_probs=170.8
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccc
Q 024579 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125 (265)
Q Consensus 46 ~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f 125 (265)
...+|++||++|+ |. .++|+||||++|||||||||||++|+++++||||+|||||||||||++||++||++++.|+ +
T Consensus 54 ~~~~~~~~r~~w~-Pg-~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-~ 130 (267)
T PLN00098 54 VCEPLPPDRPLWF-PG-SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-I 130 (267)
T ss_pred ccccCCCCccccC-CC-CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc-c
Confidence 4668999999999 54 6899999999999999999999999999999999999999999999999999999987665 5
Q ss_pred cchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCC--CC--C----------CCCCCCCCC
Q 024579 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG--PL--G----------EGLDPLYPG 191 (265)
Q Consensus 126 ~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~--p~--g----------~~~d~~yPG 191 (265)
....||++|.. +|+++|. .++++|+++||++|++|+.+- |. + ...|..|||
T Consensus 131 ~~~~w~~Ag~~-------~~~~~~~--------~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPG 195 (267)
T PLN00098 131 ENFSWYDAGAR-------EYFADPT--------TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPG 195 (267)
T ss_pred cccccccccch-------hhccCch--------HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCC
Confidence 55679998753 3555552 345779999999999987641 10 0 112558999
Q ss_pred CC-CCCCCCC-CCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCccccccc
Q 024579 192 GA-FDPLGLA-DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260 (265)
Q Consensus 192 ~~-FDPLgl~-~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 260 (265)
|+ ||||||. +|+++++++|+||||||||||+||+||++|+++||++|++||.+||+||+||||++..+.
T Consensus 196 g~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 196 GLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99 9999997 589999999999999999999999999999999999999999999999999999987653
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=7.1e-64 Score=451.25 Aligned_cols=190 Identities=40% Similarity=0.695 Sum_probs=164.1
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchh
Q 024579 50 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAV 129 (265)
Q Consensus 50 ~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~ 129 (265)
.++||++|+ |. .++|+||||++|||||||||||++|+++++||||+|||||||||||++||++||+++..|+. ..+.
T Consensus 40 ~~~~R~~w~-Pg-~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~-~~p~ 116 (244)
T PLN00097 40 AAADRPTWL-PG-KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA-DLPN 116 (244)
T ss_pred cCCCCcccC-CC-CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc-cCCc
Confidence 358999999 55 68999999999999999999999999999999999999999999999999999999987773 3568
Q ss_pred hhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC--CCCC-------------CCCCCCCCCCCC
Q 024579 130 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG-------------EGLDPLYPGGAF 194 (265)
Q Consensus 130 w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~--~p~g-------------~~~d~~yPG~~F 194 (265)
||++++.. .|+... .+++.+|+++||++|.+|+.+ .|.+ +..|..||||.|
T Consensus 117 W~~Ag~~~------~~~~~~--------~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~F 182 (244)
T PLN00097 117 WIDAAKWD------GYWAGA--------GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLF 182 (244)
T ss_pred cccCCcch------hccccc--------hhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCC
Confidence 99988632 132211 245677899999999999764 1210 112557999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCccc
Q 024579 195 DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWA 256 (265)
Q Consensus 195 DPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~ 256 (265)
|||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+|++||+|||+|.
T Consensus 183 DPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~~ 244 (244)
T PLN00097 183 DKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIFG 244 (244)
T ss_pred CccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999973
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.1e-63 Score=449.85 Aligned_cols=191 Identities=39% Similarity=0.721 Sum_probs=164.6
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccc
Q 024579 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125 (265)
Q Consensus 46 ~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f 125 (265)
.+.++.++|++|+ |+ .++|+||||++|||||||||||++|+++++|||++||+||||||||++|+++||+++..|+ +
T Consensus 45 ~~~~~~~~r~~W~-P~-~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~-~ 121 (250)
T PLN00101 45 RSFKVEAKKGEWL-PG-LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-I 121 (250)
T ss_pred ccccccccccccC-CC-CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC-c
Confidence 4678899999999 77 7899999999999999999999999999999999999999999999999999999987765 3
Q ss_pred cchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC--CC-------CCC-----CCCCCCCC
Q 024579 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GP-------LGE-----GLDPLYPG 191 (265)
Q Consensus 126 ~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~--~p-------~g~-----~~d~~yPG 191 (265)
..+.||++|.. +|++.+ ..++.+|+++||++|.+|+.+ .| ... ..|..|||
T Consensus 122 ~~p~w~~ag~~-------~~~~~~--------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPG 186 (250)
T PLN00101 122 NAPQWYDAGKA-------EYFASS--------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPG 186 (250)
T ss_pred CCCccccccch-------hhcccc--------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCC
Confidence 45689998753 354433 245677899999999999764 12 111 12567999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCccccc
Q 024579 192 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYA 258 (265)
Q Consensus 192 ~~FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~ 258 (265)
|.||||||+++ +++|+||||||||||+||+||++|+++||+||++||.+||+||+||||++..
T Consensus 187 G~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 187 GIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred CccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhc
Confidence 99999999876 3899999999999999999999999999999999999999999999988753
No 7
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.5e-62 Score=443.28 Aligned_cols=194 Identities=42% Similarity=0.708 Sum_probs=167.1
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhh
Q 024579 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 130 (265)
Q Consensus 51 ~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w 130 (265)
.++|..|+ || .++|+||||++|||||||||||++++++++||||+|||||||||||++||++||+++. +.|
T Consensus 41 ~~~~~~w~-P~-~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------~~w 111 (243)
T PLN00099 41 VTMSADWM-PG-QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------GNW 111 (243)
T ss_pred cccccccc-CC-CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-------CCc
Confidence 35667788 67 6899999999999999999999999999999999999999999999999999999763 347
Q ss_pred hhcccc-cccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 024579 131 FKAGAQ-IFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAEL 209 (265)
Q Consensus 131 ~~ag~~-~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~dpe~~~~~ 209 (265)
++++.. .++++..+|+++|. ....+++++++|+++||++|.+|.... + ..+..||||.||||||.+|+++++++
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~--~~~~l~~~~~iqvl~ig~~E~~r~~~~--~-~~~~~yPGd~FDPlGl~kd~~~~~~~ 186 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK--D-PEKKKYPGGAFDPLGYSKDPKKFEEY 186 (243)
T ss_pred ccccchhccCcchhhhccCcc--chhhHHHHHHHHHHHHHHHHHHhhccC--C-CCCCcCCCCcCCcccccCCHHHHHHH
Confidence 877642 34566677877764 334577788899999999999886431 1 12457999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-hhcCCCchhhhhhhhCCCcCCCccccc
Q 024579 210 KVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENLYDHIADPVANNAWAYA 258 (265)
Q Consensus 210 k~kELkNGRLAMlA~~G~~~Q~-~vTG~gPl~nL~~hladP~~~n~~~~~ 258 (265)
|+|||||||||||||+||++|+ ++||++|++||.+||+||+|||+++..
T Consensus 187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~ 236 (243)
T PLN00099 187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 236 (243)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeee
Confidence 9999999999999999999998 679999999999999999999998754
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=2.6e-62 Score=443.44 Aligned_cols=196 Identities=43% Similarity=0.781 Sum_probs=169.0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCcccc
Q 024579 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 126 (265)
Q Consensus 47 ~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~ 126 (265)
...++++|++|+ || .++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++..|+. .
T Consensus 38 ~~~~~~~R~~wl-P~-~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~-~ 114 (252)
T PLN00147 38 NPVVAQERPTWL-PG-LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-N 114 (252)
T ss_pred cccCCCCccccC-CC-CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc-C
Confidence 568889999999 67 68999999999999999999999999999999999999999999999999999999887763 3
Q ss_pred chhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC--CCCC--------------CCCCCCCC
Q 024579 127 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG--------------EGLDPLYP 190 (265)
Q Consensus 127 ~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~--~p~g--------------~~~d~~yP 190 (265)
.+.|++++..++. + . ...+++++|+++||++|.+|+.+ .|.. ++.++.||
T Consensus 115 ~p~w~~ag~~~~~-----~-~--------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yP 180 (252)
T PLN00147 115 LPVWYEAGAVKFE-----F-A--------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYP 180 (252)
T ss_pred Ccchhhcccchhc-----c-c--------cchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCc
Confidence 4679988754321 1 1 12445678899999999988654 1110 12356799
Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccccc
Q 024579 191 GGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 259 (265)
Q Consensus 191 G~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 259 (265)
||. ||||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+||+||+||||++..+
T Consensus 181 Gd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~ 250 (252)
T PLN00147 181 GGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLS 250 (252)
T ss_pred ccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhc
Confidence 999 999999999999999999999999999999999999999999999999999999999999988754
No 9
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=5.8e-62 Score=443.48 Aligned_cols=203 Identities=45% Similarity=0.788 Sum_probs=172.1
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChh------HHhhhHHHHHhhcceeeecccchhhhhhhh
Q 024579 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE------TFAKNRELEVIHSRWAMLGALGCVFPEILS 119 (265)
Q Consensus 46 ~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe------~~~~~ReaELkHGR~AMLA~~G~lvpE~l~ 119 (265)
...+|+++|++|+ |. .++|+||||++|||||||||||+ ||+ +.+|+|++|||||||||||++||++||+++
T Consensus 34 ~~~~~~~~r~~w~-p~-~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWF-AS-KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceec-CC-CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 4578899999999 54 79999999999999999999997 454 579999999999999999999999999998
Q ss_pred cCCcccc--chhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC--CCCC-------------
Q 024579 120 KNGVKFG--EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG------------- 182 (265)
Q Consensus 120 ~~G~~f~--~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~--~p~g------------- 182 (265)
+.|+-.. ...||++|. +...+..+|+++|. +++++|+++||++|.+|+.+ .|..
T Consensus 111 ~~g~~~~~~~~~w~~ag~-~~~~~~~~y~~~p~--------~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~ 181 (262)
T PLN00048 111 KAGLIPQETALPWFQSGV-IPPAGTYDYWADPY--------TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGL 181 (262)
T ss_pred cCCccccccccccccccc-cccccccccccchh--------HHHHHHHHHhhheeeeccccccCCCcccccccccchhcc
Confidence 7665211 235999886 44455667877753 45678999999999999865 1210
Q ss_pred CC-CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCccccccc
Q 024579 183 EG-LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260 (265)
Q Consensus 183 ~~-~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 260 (265)
.+ .|..||||+ ||||||.+|+|+++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++..+.
T Consensus 182 ~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 182 GGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 00 156799998 9999999999999999999999999999999999999999999999999999999999999887543
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=2.3e-58 Score=415.34 Aligned_cols=175 Identities=38% Similarity=0.631 Sum_probs=150.7
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhh
Q 024579 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 130 (265)
Q Consensus 51 ~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w 130 (265)
..+|++|+ || .++|+||||++|||||||||||++|+|+++||||+|||||||||||++|+++||+++. +.|
T Consensus 32 ~~~r~~W~-P~-~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~-------P~w 102 (246)
T PLN00100 32 ARARPMWY-PG-ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL-------PKF 102 (246)
T ss_pred cCCCcccC-CC-CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------cch
Confidence 46888999 77 7999999999999999999999999999999999999999999999999999999752 568
Q ss_pred hhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCC-CCCCCCCCCCCCCC-CCCCCCCCCHHHHHH
Q 024579 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGG-PLGEGLDPLYPGGA-FDPLGLADDPDQFAE 208 (265)
Q Consensus 131 ~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~-p~g~~~d~~yPG~~-FDPLgl~~dpe~~~~ 208 (265)
+++|... |..+ +.+++++|+++||++|.+|+.+. +.+ +..+||++ ||||||.+ ++
T Consensus 103 ~~ag~~~-------~~~~--------~~~l~~iqill~g~~E~~r~~~~~~~g---~~~~pg~~~FDPLGl~~-----~~ 159 (246)
T PLN00100 103 WEAGAEK-------YGLD--------LQTLVLIQVVVMAVLEAARYRGFMKTG---ESGVLSFFPFDPTGMDS-----PE 159 (246)
T ss_pred hhcchhh-------hccc--------hhHHHHHHHHHHHHHhhhccccccccc---ccCCCCCCCCCcccccH-----HH
Confidence 8877532 2111 23466789999999999998752 222 24568888 99999963 58
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccc
Q 024579 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAY 257 (265)
Q Consensus 209 ~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 257 (265)
+|+||||||||||+||+||++|+++||++|++||.+|++||+|||+++.
T Consensus 160 ~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~ 208 (246)
T PLN00100 160 MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208 (246)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccC
Confidence 9999999999999999999999999999999999999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=7.8e-53 Score=381.46 Aligned_cols=160 Identities=42% Similarity=0.713 Sum_probs=136.2
Q ss_pred CCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhhhhcccccccCCCc
Q 024579 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGL 143 (265)
Q Consensus 64 ~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w~~ag~~~~~~g~l 143 (265)
.+|+||||++||||||||+||++|||+++|||++||+||||||||++||++||+++ | ..||++|.+.
T Consensus 65 ~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g-----~~w~~aG~~~------ 131 (255)
T PLN00170 65 VDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G-----IPWFEAGADP------ 131 (255)
T ss_pred CCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C-----CChhhCCccc------
Confidence 57999999999999999999999999999999999999999999999999999985 2 2499998642
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC--CCCC------------------CCCCCCCCCCC-CCCCCCCC-
Q 024579 144 DYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG--GPLG------------------EGLDPLYPGGA-FDPLGLAD- 201 (265)
Q Consensus 144 ~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~--~p~g------------------~~~d~~yPG~~-FDPLgl~~- 201 (265)
.+. .| ..+.+++++|+++||++|.+|+.+ .|.+ ...+..||||. ||||||++
T Consensus 132 ~~~-~p-----~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~ 205 (255)
T PLN00170 132 GAI-AP-----FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGT 205 (255)
T ss_pred ccc-Cc-----cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCccccccc
Confidence 111 12 234578889999999999999875 2321 11245799997 99999985
Q ss_pred --------CHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhh
Q 024579 202 --------DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243 (265)
Q Consensus 202 --------dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~ 243 (265)
|+++++++|+||||||||||+|++||++|+ .||++||+||.
T Consensus 206 ~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 206 VKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 889999999999999999999999999999 79999999984
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=3.9e-43 Score=296.58 Aligned_cols=149 Identities=47% Similarity=0.820 Sum_probs=116.3
Q ss_pred CCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhc-CCcc-c-cchhhhhcccccccCC
Q 024579 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVK-F-GEAVWFKAGAQIFSEG 141 (265)
Q Consensus 65 ~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~-~G~~-f-~~~~w~~ag~~~~~~g 141 (265)
+|+||||+++|||||||+||++++ +++|+||+|||||||||||++|++++|+++. ++.. + ..+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 599999999999999999999988 9999999999999999999999999999864 2211 1 1233443220
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCC---CCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhh
Q 024579 142 GLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPL---GEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNG 217 (265)
Q Consensus 142 ~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~---g~~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNG 217 (265)
+ + ....+++++++++|++|.++....+. ....+..||||. |||||+.+|++.++++|++|||||
T Consensus 74 -~-----~------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NG 141 (156)
T PF00504_consen 74 -I-----P------VPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNG 141 (156)
T ss_dssp -S-----S------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHH
T ss_pred -h-----h------hhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 0 0 11234456678999999987654211 112457899998 999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 024579 218 RLAMFSMFGFFVQAI 232 (265)
Q Consensus 218 RLAMlA~~G~~~Q~~ 232 (265)
|||||||+|+++|+.
T Consensus 142 RlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 142 RLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=307.59 Aligned_cols=161 Identities=30% Similarity=0.387 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCcCC-ChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhhhhcccccc
Q 024579 60 PFSEQTPSYLTGEFPGDYGWDTAGLSA-DPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIF 138 (265)
Q Consensus 60 pf~~~~P~yL~G~~pGd~gfDPLGLs~-dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w~~ag~~~~ 138 (265)
|| .+.|..|+|. .||++||||||++ ++|+++|||++|||||||||||++|+++||.++.+|.-+ ++
T Consensus 42 pf-~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~----~~------- 108 (209)
T PLN00089 42 GF-AAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY----SF------- 108 (209)
T ss_pred cc-ccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc----cc-------
Confidence 66 5567789999 9999999999985 678899999999999999999999999999987665310 11
Q ss_pred cCCCcccCCCChhhHH-HHHHH-HHHHHH-HHHHhhhceeecCCCCCCCCCCCCCCCC-CCCCCCC-CCHHHHHHHHHHH
Q 024579 139 SEGGLDYLGNPNLIHA-QSILA-IWACQV-VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLA-DDPDQFAELKVKE 213 (265)
Q Consensus 139 ~~g~l~y~~~p~~~~~-q~i~~-i~~~q~-~l~g~~E~~r~~~~p~g~~~d~~yPG~~-FDPLgl~-~dpe~~~~~k~kE 213 (265)
.+.|+.+.+ +.++. .++.|+ ++||++|.............+..||||+ ||||||. +|+++++++|++|
T Consensus 109 -------~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~E 181 (209)
T PLN00089 109 -------AAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKE 181 (209)
T ss_pred -------cccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHH
Confidence 112222111 12222 224564 5799999532111101111135799999 9999995 6899999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCchh
Q 024579 214 LKNGRLAMFSMFGFFVQAIVTGKGPIE 240 (265)
Q Consensus 214 LkNGRLAMlA~~G~~~Q~~vTG~gPl~ 240 (265)
||||||||+||+||++|+++||++.++
T Consensus 182 l~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 182 LKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999998764
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=259.22 Aligned_cols=144 Identities=25% Similarity=0.392 Sum_probs=103.2
Q ss_pred cccCCcC--CChhHHhhhHHHHHhhcceeeecccchhhhhh-hhcCCccccchhhhhcccccccCCCcccCCCChhh-HH
Q 024579 79 WDTAGLS--ADPETFAKNRELEVIHSRWAMLGALGCVFPEI-LSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLI-HA 154 (265)
Q Consensus 79 fDPLGLs--~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~-l~~~G~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~-~~ 154 (265)
|||+||+ .|+++++|||++|||||||||||++||+++|. ++.+|. . + ++ +..|...|... +.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~-----~--~-----~~--g~~~~~~p~~~~a~ 112 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGD-----I--D-----YS--GTSFSDIPNGFAAL 112 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCc-----c--c-----cc--cccccccccchhhh
Confidence 9999997 47899999999999999999999999999996 332321 0 0 00 01111122221 12
Q ss_pred HHHHHHHHHH-HHHHHhhhceeecCCCCCCCCCCCCCCCC-CC--CCCCCC-CHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 024579 155 QSILAIWACQ-VVLMGFVEGYRIGGGPLGEGLDPLYPGGA-FD--PLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFV 229 (265)
Q Consensus 155 q~i~~i~~~q-~~l~g~~E~~r~~~~p~g~~~d~~yPG~~-FD--PLgl~~-dpe~~~~~k~kELkNGRLAMlA~~G~~~ 229 (265)
..++..+++| ++++|++|..+..+ +.+ ++.+|||+ ++ +|||.. |+++++++|+|||||||||||||+||++
T Consensus 113 ~~vp~~g~~qi~~~ig~~E~~~~~~-~~~---~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~ 188 (202)
T PLN00120 113 DAIPTAGLLQILAFIGFLELAVMKD-ITG---EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188 (202)
T ss_pred hhcchhHHHHHHHHHHHHHHHhhcc-ccc---CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556 57899999865432 112 24688865 32 566653 8899999999999999999999999999
Q ss_pred HHhhcCCCchh
Q 024579 230 QAIVTGKGPIE 240 (265)
Q Consensus 230 Q~~vTG~gPl~ 240 (265)
|+.++|+.|+-
T Consensus 189 qe~l~g~~~~~ 199 (202)
T PLN00120 189 HEQLGVELPII 199 (202)
T ss_pred HHHccCCCcCC
Confidence 99999998763
No 15
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.61 E-value=6.4e-16 Score=140.66 Aligned_cols=55 Identities=42% Similarity=0.715 Sum_probs=52.4
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCch
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl 239 (265)
+|+.+|||+ ||||||.+|+++++++|++|||||||||+|++|+++||++|+++++
T Consensus 66 LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 66 LNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred cCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 467899999 9999999999999999999999999999999999999999998876
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.61 E-value=7.6e-16 Score=141.32 Aligned_cols=57 Identities=39% Similarity=0.629 Sum_probs=53.1
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhh
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 241 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~n 241 (265)
+|+.+|||+ ||||||++|++.++++|++||||||+||+|++|+++|+++++.+++++
T Consensus 75 LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 75 LDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 467899999 999999999999999999999999999999999999999998877763
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.55 E-value=5.3e-15 Score=134.84 Aligned_cols=54 Identities=33% Similarity=0.560 Sum_probs=50.7
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCC
Q 024579 184 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237 (265)
Q Consensus 184 ~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~g 237 (265)
.+|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 57 ~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 57 HLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred cCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 4688999999 99999999999999999999999999999999999999998654
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.50 E-value=1.8e-14 Score=131.43 Aligned_cols=53 Identities=40% Similarity=0.582 Sum_probs=49.5
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCc
Q 024579 186 DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238 (265)
Q Consensus 186 d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gP 238 (265)
|+.+|||+ ||||+|.+|++.++++|.+||+|||+||+|++|+++|+++||...
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w 124 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 124 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence 55789999 999999999999999999999999999999999999999998643
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.49 E-value=3e-14 Score=129.36 Aligned_cols=54 Identities=33% Similarity=0.504 Sum_probs=50.7
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCc
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gP 238 (265)
+|+..|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 57 LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 57 LDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred cCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 567889999 999999999999999999999999999999999999999998654
No 20
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.48 E-value=2.8e-14 Score=133.62 Aligned_cols=55 Identities=29% Similarity=0.443 Sum_probs=50.9
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCc
Q 024579 184 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238 (265)
Q Consensus 184 ~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gP 238 (265)
.+|+.+|||+ ||||||++||+.++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 122 yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 122 HLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred ccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 4578899999 999999999999999999999999999999999999999886543
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.46 E-value=5.1e-14 Score=129.03 Aligned_cols=53 Identities=30% Similarity=0.582 Sum_probs=49.5
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCC
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~g 237 (265)
+|+.+|||+ ||||||++||++++++|..||||||+||+|++|+++|+++++.+
T Consensus 66 Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 66 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred ccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 467889999 99999999999999999999999999999999999999998654
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.45 E-value=7e-14 Score=126.93 Aligned_cols=51 Identities=37% Similarity=0.539 Sum_probs=48.3
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhc
Q 024579 184 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 234 (265)
Q Consensus 184 ~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vT 234 (265)
.+|+.+|||+ ||||||++|++.++++|.+||||||+||+|++|+++|++++
T Consensus 47 ~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 47 YLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 4678899999 99999999999999999999999999999999999999975
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.44 E-value=2.8e-14 Score=130.80 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=48.6
Q ss_pred CCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579 71 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122 (265)
Q Consensus 71 G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G 122 (265)
..+|||++|||+||++|+|+++++|..||||||+||+|++||++||+++..|
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 4699999999999999999999999999999999999999999999987544
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.40 E-value=2e-13 Score=124.03 Aligned_cols=53 Identities=34% Similarity=0.481 Sum_probs=48.9
Q ss_pred CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcC
Q 024579 183 EGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235 (265)
Q Consensus 183 ~~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG 235 (265)
+.+|+..|||+ ||||+|+++++.++++|.+||||||+||+|++|+++||+++.
T Consensus 55 ~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 55 PYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred ccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 34678899999 999999999999999999999999999999999999999753
No 25
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.40 E-value=8.9e-14 Score=123.92 Aligned_cols=52 Identities=27% Similarity=0.502 Sum_probs=47.7
Q ss_pred CCCCCCCCcccCCc-CCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579 71 GEFPGDYGWDTAGL-SADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122 (265)
Q Consensus 71 G~~pGd~gfDPLGL-s~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G 122 (265)
+..|||+||||+|| .+|+++++++|..||||||+||+|++|++++|+++..|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 47899999999999 46899999999999999999999999999999987544
No 26
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.38 E-value=2.9e-13 Score=125.36 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=47.9
Q ss_pred CCCCCCCCC-CCCCCCCCCHHH-------------------------------------------HHHHHHHHhhhhhhH
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQ-------------------------------------------FAELKVKELKNGRLA 220 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~-------------------------------------------~~~~k~kELkNGRLA 220 (265)
+|+.+|||+ ||||||++|||. ++++|..||+|||+|
T Consensus 65 LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwA 144 (286)
T PLN00187 65 LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWA 144 (286)
T ss_pred ccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHH
Confidence 467899999 999999999986 599999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 024579 221 MFSMFGFFVQAIVTGK 236 (265)
Q Consensus 221 MlA~~G~~~Q~~vTG~ 236 (265)
|+|++|+++||+++|.
T Consensus 145 MLAvaG~lvpEll~G~ 160 (286)
T PLN00187 145 MLATLGALSVEALTGV 160 (286)
T ss_pred HHHhhchhhHHhccCC
Confidence 9999999999998764
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.34 E-value=1.3e-12 Score=110.42 Aligned_cols=51 Identities=51% Similarity=0.790 Sum_probs=46.9
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCC
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~ 236 (265)
+|+.++|++ ||||+|++|+ .+.++|..||||||+||+|++|++++++.++.
T Consensus 5 l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 5 LDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred ccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 456688888 9999999888 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.16 E-value=1.5e-11 Score=109.24 Aligned_cols=45 Identities=40% Similarity=0.806 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCC--CCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 024579 188 LYPGGAFDPLGLA--DDPDQFAELKVKELKNGRLAMFSMFGFFVQAI 232 (265)
Q Consensus 188 ~yPG~~FDPLgl~--~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~ 232 (265)
.-|.|+||||||. +|+++++++|.+||||||+||+|++|+++|++
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 4577789999996 47899999999999999999999999999996
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.18 E-value=1.3e-06 Score=75.89 Aligned_cols=49 Identities=41% Similarity=0.507 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhc-CCCchhhhhhhhCCCcCC
Q 024579 204 DQFAELKVKELKNGRLAMFSMFGFFVQAIVT-GKGPIENLYDHIADPVAN 252 (265)
Q Consensus 204 e~~~~~k~kELkNGRLAMlA~~G~~~Q~~vT-G~gPl~nL~~hladP~~~ 252 (265)
+..++.|..|+.||||||++|+--++-|++| |+||++||.....-|+..
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e 179 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVID 179 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchh
Confidence 4568889999999999999999999999999 999999999888888764
No 30
>PHA02337 putative high light inducible protein
Probab=98.10 E-value=2.7e-06 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhcCCCc
Q 024579 211 VKELKNGRLAMFSMFGFFVQAIVTGKGP 238 (265)
Q Consensus 211 ~kELkNGRLAMlA~~G~~~Q~~vTG~gP 238 (265)
..|+-||||||++|+..+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999999864
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.56 E-value=5e-05 Score=68.72 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=33.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhh
Q 024579 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDH 245 (265)
Q Consensus 209 ~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~h 245 (265)
+...|+-|||+|||||+..++-|++||+|.+.++...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3458999999999999999999999999999998653
No 32
>PHA02337 putative high light inducible protein
Probab=96.98 E-value=0.00015 Score=47.47 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=25.1
Q ss_pred hHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579 94 NRELEVIHSRWAMLGALGCVFPEILSKNG 122 (265)
Q Consensus 94 ~ReaELkHGR~AMLA~~G~lvpE~l~~~G 122 (265)
...+|..+||+||+|++-.+..|+++..+
T Consensus 2 t~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 2 TPEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999999987544
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=94.09 E-value=0.01 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.4
Q ss_pred HHHHHhhcceeeecccchhhhhhhhcCCc
Q 024579 95 RELEVIHSRWAMLGALGCVFPEILSKNGV 123 (265)
Q Consensus 95 ReaELkHGR~AMLA~~G~lvpE~l~~~G~ 123 (265)
.++|+.+||+||+|++-.++.|+++..|+
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gl 188 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGL 188 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcH
Confidence 57999999999999999999999875443
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=88.77 E-value=0.11 Score=45.55 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=29.9
Q ss_pred hHHhhhHHHHHhhcceeeecccchhhhhhhh-cCCc
Q 024579 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGV 123 (265)
Q Consensus 89 e~~~~~ReaELkHGR~AMLA~~G~lvpE~l~-~~G~ 123 (265)
.+.+..+.-|+.+||+||||++--++.|+++ ..|+
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGi 165 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGP 165 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcch
Confidence 4567778899999999999999999999998 4453
No 35
>PLN02449 ferrochelatase
Probab=54.97 E-value=8.8 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhhcCCCch
Q 024579 219 LAMFSMFGFFVQAIVTGKGPI 239 (265)
Q Consensus 219 LAMlA~~G~~~Q~~vTG~gPl 239 (265)
+||+||+.+++-+++||+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 36
>PHA00003 B internal scaffolding protein
Probab=38.46 E-value=56 Score=26.80 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHH
Q 024579 179 GPLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFS 223 (265)
Q Consensus 179 ~p~g~~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA 223 (265)
.|.....++.+|-++ |||.- .|- +.++.|-.||.+||-+.-=
T Consensus 34 s~~~g~~~~t~p~gLRrdpvq--~d~-EaERqkr~~iEagk~~c~R 76 (120)
T PHA00003 34 SSVQGVANGTDPSGLRRDPVQ--QDL-EAERQKRADIEAGKAICAR 76 (120)
T ss_pred CcccCCCCCCCccccccCccc--chH-HHHHHHHHHHHHHHHHHHH
Confidence 344444567889888 99853 232 3567888999999986543
No 37
>PF02304 Phage_B: Scaffold protein B; InterPro: IPR003513 This is a family of proteins from single-stranded DNA bacteriophages. Scaffold proteins B and D are required for procapsid formation. Sixty copies of the internal scaffold protein B are found in the procapsid.; GO: 0019069 viral capsid assembly, 0046729 viral procapsid; PDB: 1CD3_B 1AL0_B.
Probab=20.95 E-value=60 Score=26.57 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHH
Q 024579 180 PLGEGLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226 (265)
Q Consensus 180 p~g~~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G 226 (265)
|...+..+.+|-++ |||.- .|- +.++.|-.+|.+||-|.-==+|
T Consensus 32 ~~~~~~~gt~p~~LR~~~~~--~d~-E~ERQk~~~iE~~ka~~~R~FG 76 (117)
T PF02304_consen 32 PEQGVPSGTEPNGLRRDPVQ--SDS-EAERQKRIDIEAGKAACARRFG 76 (117)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCccccccCccc--chH-HHHHHHHHHHHHHHHHHHHHcC
Confidence 33333456778888 88853 222 3567888999999987654444
Done!