Query 024579
Match_columns 265
No_of_seqs 249 out of 1176
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 9.7E-79 3.3E-83 545.3 14.2 223 43-265 10-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 3.1E-66 1E-70 465.1 5.0 195 47-257 4-241 (243)
3 2wsc_3 LHCA3, type II chloroph 100.0 1.3E-62 4.3E-67 449.8 3.7 201 48-260 50-275 (276)
4 2wsc_2 LHCA2, type II chloroph 100.0 1.1E-62 3.7E-67 448.8 -0.6 194 47-259 57-267 (269)
5 2wsc_4 Chlorophyll A-B binding 100.0 3.2E-62 1.1E-66 442.4 -1.9 191 46-259 44-249 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 3.1E-60 1.1E-64 427.0 2.8 192 55-260 46-239 (241)
7 2bhw_A Chlorophyll A-B binding 99.5 4.1E-14 1.4E-18 126.5 7.0 52 184-235 35-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 4.8E-15 1.6E-19 134.0 -1.7 55 185-239 66-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 1.7E-14 5.7E-19 131.5 0.2 54 186-239 78-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 5.1E-14 1.7E-18 126.5 1.8 50 72-122 172-221 (243)
11 2wsc_3 LHCA3, type II chloroph 99.3 9.6E-14 3.3E-18 126.9 -0.5 53 70-122 200-252 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 1.8E-13 6.3E-18 122.9 0.1 50 185-234 58-108 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 40.1 15 0.0005 21.3 1.6 15 88-102 6-20 (26)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=9.7e-79 Score=545.29 Aligned_cols=223 Identities=87% Similarity=1.480 Sum_probs=211.4
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579 43 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122 (265)
Q Consensus 43 ~~~~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G 122 (265)
++++|+||++||++|+|||+.++|+||||++|||||||||||++|+|+++||||+|||||||||||++||++||++++.|
T Consensus 10 ~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 45578999999999999997799999999999999999999999999999999999999999999999999999999889
Q ss_pred ccccchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024579 123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD 202 (265)
Q Consensus 123 ~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~d 202 (265)
++|+++.|+++|.+++++++++|+++|...+.|++.+++++|+++||++|.+|+.+++.++..|+.||||.|||||+.+|
T Consensus 90 ~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~ 169 (232)
T 2bhw_A 90 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD 169 (232)
T ss_dssp CCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCS
T ss_pred cCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccc
Confidence 99988999999998898888999999988888999999999999999999999887666666677899999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccccccCCCCC
Q 024579 203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265 (265)
Q Consensus 203 pe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~~~~~ 265 (265)
+++++++|++|||||||||+||+|+++|+++||++|++||.+|++||+|||+++++++|+||+
T Consensus 170 ~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~ 232 (232)
T 2bhw_A 170 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred hHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=3.1e-66 Score=465.08 Aligned_cols=195 Identities=41% Similarity=0.707 Sum_probs=135.4
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChh-------------------------------------
Q 024579 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE------------------------------------- 89 (265)
Q Consensus 47 ~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe------------------------------------- 89 (265)
.+|++++|++|++ +.++|+||||++|||||||||||++|||
T Consensus 4 ~~~~~~~r~~w~p--g~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (243)
T 3pl9_A 4 KSGFSTDRPLWYP--GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQ 81 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCcccccccC--CCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccc
Confidence 3578899999994 4789999999999999999999999997
Q ss_pred ------HHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHH
Q 024579 90 ------TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 163 (265)
Q Consensus 90 ------~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~ 163 (265)
+|+||||+|||||||||||++||++||+++ | ..|+++|.+.++ ++++|+++|.. +++.+++++
T Consensus 82 ~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g-----~~W~~aG~~~~~-~g~~y~g~p~~---~~i~~l~~~ 150 (243)
T 3pl9_A 82 PYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--G-----ITWQDAGKVELI-EGSSYLGQPLP---FSMTTLIWI 150 (243)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S-----CCTTTHHHHHHH-SCEEETTEEEC---CCHHHHHHH
T ss_pred cccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--C-----cccccccccccc-cccccccCccc---hhhHHHHHH
Confidence 389999999999999999999999999986 2 359999886665 46789888753 356778889
Q ss_pred HHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhh
Q 024579 164 QVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY 243 (265)
Q Consensus 164 q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~ 243 (265)
|+++||++|.+|+.+.. ..+..||||+||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.
T Consensus 151 qv~lmG~~E~~R~~~~~---~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~ 227 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAELD---TEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWV 227 (243)
T ss_dssp HHHHHHHHHHHHHSCCC---TTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHhhcccC---CccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999999999987521 124579999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcCCCcccc
Q 024579 244 DHIADPVANNAWAY 257 (265)
Q Consensus 244 ~hladP~~~n~~~~ 257 (265)
+|++||+||||++.
T Consensus 228 ~HladP~~~ni~~~ 241 (243)
T 3pl9_A 228 THLSDPLHTTILDR 241 (243)
T ss_dssp HHHHCSGGGSTTTT
T ss_pred HHhcCcchhhhhhh
Confidence 99999999998764
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.3e-62 Score=449.82 Aligned_cols=201 Identities=45% Similarity=0.825 Sum_probs=115.3
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHH------hhhHHHHHhhcceeeecccchhhhhhhhcC
Q 024579 48 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF------AKNRELEVIHSRWAMLGALGCVFPEILSKN 121 (265)
Q Consensus 48 ~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~------~~~ReaELkHGR~AMLA~~G~lvpE~l~~~ 121 (265)
.+|++||++|+ |+ .++|+||+|++||||||||||| +|||++ +|+||+|||||||||||++|+++||+++..
T Consensus 50 ~~~g~~R~~wl-P~-~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWF-AS-KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccC-CC-CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 35999999999 76 7999999999999999999999 689999 999999999999999999999999999987
Q ss_pred Cccccc-h-hhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC----CCCC------------C
Q 024579 122 GVKFGE-A-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLG------------E 183 (265)
Q Consensus 122 G~~f~~-~-~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~----~p~g------------~ 183 (265)
|+.+.+ + .|++++. +...+.++|++++. .++++|+++||++|.+|+.+ ++.+ +
T Consensus 127 g~~~~~~p~~w~~~g~-ip~aG~~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~ 197 (276)
T 2wsc_3 127 GLIPQETALPWFRTGF-IPPAGTYNYWADSY--------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGG 197 (276)
T ss_dssp CCCCCSSCCSSSSCCC-C-----CCCSCCCC--------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCC
T ss_pred ccccccCcchhhhhhc-ccchhHHHHhccch--------HHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccc
Confidence 875432 3 4998664 55556677887764 24567889999999998653 1111 1
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCccccccc
Q 024579 184 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATN 260 (265)
Q Consensus 184 ~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 260 (265)
..|..||||+ ||||||.+|+++++++|++|||||||||+||+|+++|+++||++|++||.+|++||+|||++++.+.
T Consensus 198 ~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 198 SGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp CSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 2356899998 9999999888889999999999999999999999999999999999999999999999999887553
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.1e-62 Score=448.85 Aligned_cols=194 Identities=44% Similarity=0.865 Sum_probs=132.5
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCcccc
Q 024579 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 126 (265)
Q Consensus 47 ~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~ 126 (265)
..||++||++|+ |+ .++|+||+|++|||||||||||++|||+++||||+|||||||||||++||++||+++..|+. .
T Consensus 57 ~~~~~~~r~~wl-pg-~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~-~ 133 (269)
T 2wsc_2 57 CTVAEPDRPLWF-PG-STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL-N 133 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS-S
T ss_pred ecccCCCccccc-CC-CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc-c
Confidence 458999999999 45 78999999999999999999999999999999999999999999999999999999987764 4
Q ss_pred chhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC----CCCC----------CCCCCCCCCC
Q 024579 127 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLG----------EGLDPLYPGG 192 (265)
Q Consensus 127 ~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~----~p~g----------~~~d~~yPG~ 192 (265)
.+.|+++|.. +|+.++. .++++|+++||++|.+|+.+ +..+ ...|..||||
T Consensus 134 ~p~w~~aG~~-------~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~ 198 (269)
T 2wsc_2 134 TPSWYTAGEQ-------EYFTDTT--------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGG 198 (269)
T ss_dssp CCCCCSTTSS-------SSCCCTT--------SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTC
T ss_pred Cccccccchh-------hhhcchH--------HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCC
Confidence 5779887642 3444432 24567888999999998754 1111 1235689999
Q ss_pred C-CCCCCCC-CCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhh-hhhCCCcCCCcccccc
Q 024579 193 A-FDPLGLA-DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLY-DHIADPVANNAWAYAT 259 (265)
Q Consensus 193 ~-FDPLgl~-~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~-~hladP~~~n~~~~~~ 259 (265)
+ ||||||. +||++++++|++||||||||||||+|+++|+++||+||++||. +||+|| |||++++.+
T Consensus 199 ~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~ 267 (269)
T 2wsc_2 199 LWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFT 267 (269)
T ss_dssp SSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSC
T ss_pred cccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhcc
Confidence 9 9999997 4788899999999999999999999999999999999999999 999999 999987654
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=3.2e-62 Score=442.38 Aligned_cols=191 Identities=36% Similarity=0.687 Sum_probs=127.9
Q ss_pred CCCCCCC-CCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCcc
Q 024579 46 QSIWYGP-DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124 (265)
Q Consensus 46 ~~~w~~~-~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~ 124 (265)
...||+| ||++|++ + .++|+||+|++|||||||||||++|||+++|+|++|||||||||||++|+++||+++..|+.
T Consensus 44 ~~~~~~~~~r~~~~p-g-~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 44 SASFKVEAKKGEWLP-G-LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ---------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred cccccCcchhhhccC-C-CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 3569999 8999995 4 78999999999999999999999999999999999999999999999999999999887764
Q ss_pred ccchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecC----CCCC-----C-----CCCCCCC
Q 024579 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGG----GPLG-----E-----GLDPLYP 190 (265)
Q Consensus 125 f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~----~p~g-----~-----~~d~~yP 190 (265)
..+.|+++|.. +|++++. .++++|+++||++|.+|+.+ ++.+ . ..|..||
T Consensus 122 -~~p~w~~aG~~-------~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yP 185 (251)
T 2wsc_4 122 -NVPKWYAAGKE-------EYFASSS--------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYP 185 (251)
T ss_dssp -CCCCCSCCCSS-------SCSSCSS--------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSS
T ss_pred -CCccccccchH-------hhhccch--------HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCC
Confidence 45679887642 4555542 23456888999999988653 1111 1 1134699
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccccc
Q 024579 191 GGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYAT 259 (265)
Q Consensus 191 G~~FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 259 (265)
||+||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+|||++++++
T Consensus 186 Gg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 186 GGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp CCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 99999999975 67899999999999 999999999999999999999999999999999998764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=3.1e-60 Score=426.99 Aligned_cols=192 Identities=43% Similarity=0.746 Sum_probs=142.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhhhhcc
Q 024579 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134 (265)
Q Consensus 55 ~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w~~ag 134 (265)
.+|+ |+ .++|+||+|++|||||||||||++|||+++||||+|||||||||||++|+++||+++. +.|++++
T Consensus 46 ~~w~-P~-~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~-------~~~~~a~ 116 (241)
T 2wsc_1 46 AHWM-PG-EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY-------GNWVKAQ 116 (241)
T ss_dssp -----------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC-------C-----C
T ss_pred cccC-CC-CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC-------Ccccccc
Confidence 4455 45 7899999999999999999999999999999999999999999999999999999764 3466654
Q ss_pred c-ccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 024579 135 A-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213 (265)
Q Consensus 135 ~-~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~dpe~~~~~k~kE 213 (265)
. ..++++..+|+++|. +.+.++.++++|+++||++|.+|..+. +..++.||||.|||||+.+|+++++++|++|
T Consensus 117 ~~~~~~~g~a~~~~~~~--~~~~~~~i~~iq~l~ig~~E~~r~~~~---~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E 191 (241)
T 2wsc_1 117 EWAALPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKLEELKVKE 191 (241)
T ss_dssp CCCSCSSCSSCCSSSCS--SSSSHHHHHHHHHHHTHHHHHHHTSCC---SSCCSSSCSCCSCSSSCSCSSSSCCCSCTTH
T ss_pred chhccCCcchhhhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCcccccccccchhHHHHHHHhh
Confidence 3 234556667777663 334567788899999999999987542 1225689999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHH-hhcCCCchhhhhhhhCCCcCCCccccccc
Q 024579 214 LKNGRLAMFSMFGFFVQA-IVTGKGPIENLYDHIADPVANNAWAYATN 260 (265)
Q Consensus 214 LkNGRLAMlA~~G~~~Q~-~vTG~gPl~nL~~hladP~~~n~~~~~~~ 260 (265)
||||||||+||+|+++|+ ++||+||++||.+|++||+|||+++..+.
T Consensus 192 ~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp HHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred cccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 999999999999999999 68999999999999999999998875443
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.47 E-value=4.1e-14 Score=126.55 Aligned_cols=52 Identities=27% Similarity=0.511 Sum_probs=48.7
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcC
Q 024579 184 GLDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235 (265)
Q Consensus 184 ~~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG 235 (265)
.+|+.+|||+ ||||||++|+|.++++|..||||||+||+|++|+++|++++.
T Consensus 35 ~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 35 YLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp TCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 4577899999 999999999999999999999999999999999999999864
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.44 E-value=4.8e-15 Score=133.98 Aligned_cols=55 Identities=42% Similarity=0.709 Sum_probs=39.4
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCch
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl 239 (265)
+++.+|||+ ||||||++|||+++++|.+||||||+||+|++|+++||++|+.+++
T Consensus 66 l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 66 LTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ---------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred cCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 356789999 9999999999999999999999999999999999999999998776
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.42 E-value=1.7e-14 Score=131.54 Aligned_cols=54 Identities=37% Similarity=0.603 Sum_probs=36.4
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCch
Q 024579 186 DPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239 (265)
Q Consensus 186 d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl 239 (265)
++.+|||+ ||||||.+|||+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 55789999 9999999999999999999999999999999999999999976544
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.39 E-value=5.1e-14 Score=126.47 Aligned_cols=50 Identities=34% Similarity=0.582 Sum_probs=47.3
Q ss_pred CCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579 72 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122 (265)
Q Consensus 72 ~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G 122 (265)
.+|||+ ||||||++|+|+++++|++||||||+||+|++|++++|+++..|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589999 99999999999999999999999999999999999999988655
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.33 E-value=9.6e-14 Score=126.94 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=43.9
Q ss_pred CCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579 70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG 122 (265)
Q Consensus 70 ~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G 122 (265)
+..+|||++|||+||++|+++++++|++||||||+||+|++|++++|+++..|
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 45689999999999999888899999999999999999999999999987544
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.31 E-value=1.8e-13 Score=122.94 Aligned_cols=50 Identities=38% Similarity=0.599 Sum_probs=45.2
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhc
Q 024579 185 LDPLYPGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVT 234 (265)
Q Consensus 185 ~d~~yPG~~-FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vT 234 (265)
+++..|||+ ||||||++|||+++++|..||||||+||+|++|+++|++++
T Consensus 58 L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 58 LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp ---CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred ccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 456789999 99999999999999999999999999999999999999875
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=40.15 E-value=15 Score=21.29 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.0
Q ss_pred hhHHhhhHHHHHhhc
Q 024579 88 PETFAKNRELEVIHS 102 (265)
Q Consensus 88 pe~~~~~ReaELkHG 102 (265)
+|-+..+||+|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 466888999999853
Done!