Your job contains 1 sequence.
>024580
MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNNEPADEFERRIFGGGY
GNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGESVNTTLSDGMQGKLREAAR
HFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDAD
FRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFAFGK
TMENLDEDYEYRTYDRREPGDFDTK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024580
(265 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007397 - symbol:AT1G07210 species:3702 "Arabi... 424 1.8e-44 2
UNIPROTKB|Q9KUZ0 - symbol:rpsR "30S ribosomal protein S18... 129 2.5e-08 1
TIGR_CMR|VC_0368 - symbol:VC_0368 "ribosomal protein S18"... 129 2.5e-08 1
TIGR_CMR|NSE_0061 - symbol:NSE_0061 "ribosomal protein S1... 127 4.2e-08 1
TIGR_CMR|SO_3928 - symbol:SO_3928 "ribosomal protein S18"... 123 1.2e-07 1
UNIPROTKB|P0A7T7 - symbol:rpsR "30S ribosomal subunit pro... 121 2.1e-07 1
TIGR_CMR|CHY_0037 - symbol:CHY_0037 "ribosomal protein S1... 119 3.6e-07 1
TIGR_CMR|APH_0152 - symbol:APH_0152 "ribosomal protein S1... 116 7.9e-07 1
TIGR_CMR|BA_5721 - symbol:BA_5721 "ribosomal protein S18"... 116 7.9e-07 1
TIGR_CMR|CBU_0865 - symbol:CBU_0865 "ribosomal protein S1... 114 1.3e-06 1
TIGR_CMR|CPS_0417 - symbol:CPS_0417 "ribosomal protein S1... 112 2.3e-06 1
TIGR_CMR|SPO_2282 - symbol:SPO_2282 "ribosomal protein S1... 108 6.4e-06 1
UNIPROTKB|P82917 - symbol:MRPS18C "28S ribosomal protein ... 105 1.4e-05 1
MGI|MGI:1915985 - symbol:Mrps18c "mitochondrial ribosomal... 105 1.4e-05 1
UNIPROTKB|P66465 - symbol:rpsR2 "30S ribosomal protein S1... 100 5.2e-05 1
RGD|1307997 - symbol:Mrps18c "mitochondrial ribosomal pro... 103 7.1e-05 1
TIGR_CMR|ECH_0309 - symbol:ECH_0309 "putative ribosomal p... 96 0.00014 1
UNIPROTKB|Q9Y3D5 - symbol:MRPS18C "28S ribosomal protein ... 101 0.00020 1
UNIPROTKB|F1NCZ4 - symbol:F1NCZ4 "Uncharacterized protein... 94 0.00024 1
TIGR_CMR|GSU_0666 - symbol:GSU_0666 "ribosomal protein S1... 92 0.00041 1
ZFIN|ZDB-GENE-060503-609 - symbol:mrps18c "mitochondrial ... 97 0.00045 1
POMBASE|SPCC18B5.04 - symbol:rsm18 "mitochondrial ribosom... 104 0.00046 1
>TAIR|locus:2007397 [details] [associations]
symbol:AT1G07210 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
HAMAP:MF_00270 InterPro:IPR001648 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 EMBL:CP002684 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC067971 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 EMBL:AF332408 EMBL:AK228540
IPI:IPI00546767 PIR:C86207 RefSeq:NP_172201.1 UniGene:At.17129
UniGene:At.48162 ProteinModelPortal:Q9LML3 SMR:Q9LML3 STRING:Q9LML3
PRIDE:Q9LML3 EnsemblPlants:AT1G07210.1 GeneID:837232
KEGG:ath:AT1G07210 TAIR:At1g07210 HOGENOM:HOG000243519
InParanoid:Q9LML3 OMA:TTMGTKA PhylomeDB:Q9LML3
ProtClustDB:CLSN2682554 ArrayExpress:Q9LML3 Genevestigator:Q9LML3
Uniprot:Q9LML3
Length = 261
Score = 424 (154.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 90/157 (57%), Positives = 113/157 (71%)
Query: 108 SDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPK-DLDLTKPGVRKTRRV 166
SDG+ GKL+EAA + D + K+ Y+FRPD + GM P+ + P ++
Sbjct: 107 SDGVDGKLKEAALAYNMDEGDGFKE-YSFRPDFNNSWGMNNFPRMQKQMQNPRQNNSKS- 164
Query: 167 EFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLM 226
EVTT++VL++ADFRNV+FL FITEAGIIIKR +GISAKAQRK+AREIKTARAFGLM
Sbjct: 165 --EVTTEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLM 222
Query: 227 PFTTMGTKSFAFGKTMENLDEDYEYRTYDRREPGDFD 263
PFTTMGTK+F FGKTMEN D+D+EY D + +FD
Sbjct: 223 PFTTMGTKAFQFGKTMENRDQDFEYEVLD--DDDEFD 257
Score = 61 (26.5 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MKLARFAFRSINANLSQESYRFSITRSLSTN 31
M +ARFA RS+N +R ++RSL+TN
Sbjct: 1 MSIARFATRSLNNVTFLRPFRPIVSRSLATN 31
>UNIPROTKB|Q9KUZ0 [details] [associations]
symbol:rpsR "30S ribosomal protein S18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648
InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239
PROSITE:PS00057 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391
OMA:AYISETG PIR:B82333 RefSeq:NP_230022.1 ProteinModelPortal:Q9KUZ0
SMR:Q9KUZ0 DNASU:2615047 GeneID:2615047 KEGG:vch:VC0368
PATRIC:20079807 Uniprot:Q9KUZ0
Length = 75
Score = 129 (50.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F T + +++ D+++V L +ITEAG I+ ++G SAK QR++AR IK AR
Sbjct: 6 RRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRARYL 65
Query: 224 GLMPFT 229
L+P+T
Sbjct: 66 ALLPYT 71
>TIGR_CMR|VC_0368 [details] [associations]
symbol:VC_0368 "ribosomal protein S18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391
OMA:AYISETG PIR:B82333 RefSeq:NP_230022.1 ProteinModelPortal:Q9KUZ0
SMR:Q9KUZ0 DNASU:2615047 GeneID:2615047 KEGG:vch:VC0368
PATRIC:20079807 Uniprot:Q9KUZ0
Length = 75
Score = 129 (50.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F T + +++ D+++V L +ITEAG I+ ++G SAK QR++AR IK AR
Sbjct: 6 RRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRARYL 65
Query: 224 GLMPFT 229
L+P+T
Sbjct: 66 ALLPYT 71
>TIGR_CMR|NSE_0061 [details] [associations]
symbol:NSE_0061 "ribosomal protein S18" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
RefSeq:YP_505962.1 ProteinModelPortal:Q2GEY4 STRING:Q2GEY4
GeneID:3932134 KEGG:nse:NSE_0061 PATRIC:22680237 OMA:KMKFLAL
ProtClustDB:CLSK2527674 BioCyc:NSEN222891:GHFU-98-MONOMER
Uniprot:Q2GEY4
Length = 73
Score = 127 (49.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 166 VEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGL 225
VE +V +ED D++NV + +F+T G ++ R +G+SAK QRK+A+E++ + L
Sbjct: 6 VESQVELDLKIEDFDYKNVALIKRFMTPVGRVLSRRATGLSAKKQRKMAKEVRKMKFLAL 65
Query: 226 MPF 228
+P+
Sbjct: 66 VPY 68
>TIGR_CMR|SO_3928 [details] [associations]
symbol:SO_3928 "ribosomal protein S18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:AYISETG RefSeq:NP_719459.1
ProteinModelPortal:Q8EAH4 SMR:Q8EAH4 GeneID:1171567
KEGG:son:SO_3928 PATRIC:23527536 Uniprot:Q8EAH4
Length = 75
Score = 123 (48.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 161 RKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTA 220
R RR +F T + + + D++++ L +ITE+G I+ ++G SAK QR++AR IK A
Sbjct: 3 RYFRRRKFCRFTAEGVAEIDYKDIVTLKNYITESGKIVPSRITGTSAKYQRQLARAIKRA 62
Query: 221 RAFGLMPFTTM 231
R L+P+T +
Sbjct: 63 RYLSLLPYTDL 73
>UNIPROTKB|P0A7T7 [details] [associations]
symbol:rpsR "30S ribosomal subunit protein S18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:U14003 GO:GO:0019843
PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH
PDBsum:3IZV PDBsum:3IZW EMBL:X04022 PDB:3SFS PDB:3UOQ PDBsum:3SFS
PDBsum:3UOQ Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
PDB:4GAS PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G
PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB
PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD
PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0
PDB:2VHO PDB:2VHP PDB:2WWL PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1
PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O
PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U
PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13
PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA
PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY
PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ
PDBsum:4GD2 ProtClustDB:PRK00391 PIR:S56427 RefSeq:NP_418623.1
RefSeq:YP_492344.1 ProteinModelPortal:P0A7T7 SMR:P0A7T7
DIP:DIP-47889N IntAct:P0A7T7 MINT:MINT-1247424 PaxDb:P0A7T7
PRIDE:P0A7T7 EnsemblBacteria:EBESCT00000004399
EnsemblBacteria:EBESCT00000017904 GeneID:12930640 GeneID:948721
KEGG:ecj:Y75_p4088 KEGG:eco:b4202 PATRIC:32123979 EchoBASE:EB0910
EcoGene:EG10917 OMA:RRRYCRF BioCyc:EcoCyc:EG10917-MONOMER
BioCyc:ECOL316407:JW4160-MONOMER EvolutionaryTrace:P0A7T7
Genevestigator:P0A7T7 Uniprot:P0A7T7
Length = 75
Score = 121 (47.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 161 RKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTA 220
R RR +F T + +++ D++++ L +ITE+G I+ ++G AK QR++AR IK A
Sbjct: 3 RYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRA 62
Query: 221 RAFGLMPFT 229
R L+P+T
Sbjct: 63 RYLSLLPYT 71
>TIGR_CMR|CHY_0037 [details] [associations]
symbol:CHY_0037 "ribosomal protein S18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275
Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 HOGENOM:HOG000218466
eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391 RefSeq:YP_358909.1
ProteinModelPortal:Q3AG25 STRING:Q3AG25 GeneID:3728735
KEGG:chy:CHY_0037 PATRIC:21273271 OMA:AYISETG
BioCyc:CHYD246194:GJCN-37-MONOMER Uniprot:Q3AG25
Length = 76
Score = 119 (46.9 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G R+ +RV K++ D D+++V L ++ITE G I+ R +SG A+ QR++ IK
Sbjct: 6 GSRRKKRV-CAFCVDKIV-DVDYKDVNRLKKYITERGKILPRRISGNCARHQRRLTTAIK 63
Query: 219 TARAFGLMPFT 229
AR L+PFT
Sbjct: 64 RARIMALLPFT 74
>TIGR_CMR|APH_0152 [details] [associations]
symbol:APH_0152 "ribosomal protein S18" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00270
InterPro:IPR001648 Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239
PROSITE:PS00057 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
RefSeq:YP_504776.1 ProteinModelPortal:Q2GLH5 STRING:Q2GLH5
GeneID:3930187 KEGG:aph:APH_0152 PATRIC:20948872 OMA:ENIDTAN
ProtClustDB:PRK00391 BioCyc:APHA212042:GHPM-187-MONOMER
Uniprot:Q2GLH5
Length = 96
Score = 116 (45.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 145 GMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSG 204
G +Y P + L +P RK+R ED D++N L++F++E G I+ ++
Sbjct: 16 GSSYSPL-VYLKRPYFRKSRSCPLAQCPD---EDIDYKNKVLLSKFVSEYGRILPSRITS 71
Query: 205 ISAKAQRKVAREIKTARAFGLMPF 228
+SA+ Q+ +AR IK AR L+P+
Sbjct: 72 VSARKQKLLARAIKRARYLALLPY 95
>TIGR_CMR|BA_5721 [details] [associations]
symbol:BA_5721 "ribosomal protein S18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:4.10.640.10
PANTHER:PTHR13479 SUPFAM:SSF46911 TIGRFAMs:TIGR00165
HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391
RefSeq:NP_847867.1 RefSeq:YP_022407.1 RefSeq:YP_031562.1
ProteinModelPortal:Q81JI4 SMR:Q81JI4 DNASU:1085488
EnsemblBacteria:EBBACT00000011085 EnsemblBacteria:EBBACT00000017466
EnsemblBacteria:EBBACT00000023515 GeneID:1085488 GeneID:2816010
GeneID:2849203 KEGG:ban:BA_5721 KEGG:bar:GBAA_5721 KEGG:bat:BAS5325
OMA:MARPFFR BioCyc:BANT260799:GJAJ-5402-MONOMER
BioCyc:BANT261594:GJ7F-5578-MONOMER Uniprot:Q81JI4
Length = 77
Score = 116 (45.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 157 KPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVARE 216
K G K R+V F T + D+++V L +F++E G I+ R ++G SAK QRK+
Sbjct: 5 KGGRAKRRKVCF--FTSNGITRIDYKDVDLLKRFVSERGKILPRRVTGTSAKYQRKLTVA 62
Query: 217 IKTARAFGLMPF 228
IK AR L+P+
Sbjct: 63 IKRARQMALLPY 74
>TIGR_CMR|CBU_0865 [details] [associations]
symbol:CBU_0865 "ribosomal protein S18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648
Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057
GO:GO:0006412 GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 HOGENOM:HOG000218466
eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391 OMA:AYISETG
RefSeq:NP_819884.1 ProteinModelPortal:Q83D75 SMR:Q83D75
PRIDE:Q83D75 GeneID:1208758 KEGG:cbu:CBU_0865 PATRIC:17930427
BioCyc:CBUR227377:GJ7S-859-MONOMER Uniprot:Q83D75
Length = 73
Score = 114 (45.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F K L++ D+++V L +I E+G ++ ++G AK QR+++R IK AR
Sbjct: 4 RRKKFCAFDAKNLQEIDYKDVNTLKDYIMESGRVVPSRITGTCAKHQRQISRAIKLARYL 63
Query: 224 GLMPF 228
L+P+
Sbjct: 64 ALLPY 68
>TIGR_CMR|CPS_0417 [details] [associations]
symbol:CPS_0417 "ribosomal protein S18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00270
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
OMA:AYISETG RefSeq:YP_267175.1 ProteinModelPortal:Q489T9 SMR:Q489T9
STRING:Q489T9 PRIDE:Q489T9 GeneID:3519660 KEGG:cps:CPS_0417
PATRIC:21464195 BioCyc:CPSY167879:GI48-512-MONOMER Uniprot:Q489T9
Length = 75
Score = 112 (44.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F T + D++++ L +ITE+G I+ ++G +AK QR++ R IK AR
Sbjct: 6 RRRKFCRFTAEGATSIDYKDIATLKNYITESGKIVPSRITGTAAKYQRQLTRAIKRARYL 65
Query: 224 GLMPFTTM 231
L+P+T +
Sbjct: 66 SLLPYTDL 73
>TIGR_CMR|SPO_2282 [details] [associations]
symbol:SPO_2282 "ribosomal protein S18" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:RRRYCRF RefSeq:YP_167506.1 HSSP:Q5SLQ0
ProteinModelPortal:Q5LR49 SMR:Q5LR49 GeneID:3193473
KEGG:sil:SPO2282 PATRIC:23377919 Uniprot:Q5LR49
Length = 75
Score = 108 (43.1 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPF 228
D+++ K L ++I+E G I+ ++ +SAK QR++AR IK AR L+P+
Sbjct: 24 DYKDTKLLQRYISERGKIVPSRITAVSAKKQRELARAIKRARFLALLPY 72
>UNIPROTKB|P82917 [details] [associations]
symbol:MRPS18C "28S ribosomal protein S18c, mitochondrial"
species:9913 "Bos taurus" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 HOGENOM:HOG000218466
EMBL:BC112818 IPI:IPI00742618 RefSeq:NP_001039973.1
UniGene:Bt.35759 ProteinModelPortal:P82917 IntAct:P82917
STRING:P82917 PRIDE:P82917 Ensembl:ENSBTAT00000024161 GeneID:613561
KEGG:bta:613561 CTD:51023 eggNOG:NOG242052
GeneTree:ENSGT00390000003791 HOVERGEN:HBG068938 InParanoid:P82917
OMA:DPKICNI OrthoDB:EOG44J2KC NextBio:20898640 Uniprot:P82917
Length = 143
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 180 DFRNVKFLTQFITE-AGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++NV+ L+QFI+ G I R ++G+ K QR++ + IK A+ G MP T
Sbjct: 74 DYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQILGFMPVT 124
>MGI|MGI:1915985 [details] [associations]
symbol:Mrps18c "mitochondrial ribosomal protein S18C"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 ProDom:PD002239
PROSITE:PS00057 MGI:MGI:1915985 GO:GO:0005739 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 CTD:51023
eggNOG:NOG242052 GeneTree:ENSGT00390000003791 HOVERGEN:HBG068938
OMA:DPKICNI OrthoDB:EOG44J2KC EMBL:AK004139 EMBL:AK145935
EMBL:BC028442 IPI:IPI00153603 RefSeq:NP_081102.1 UniGene:Mm.25585
ProteinModelPortal:Q8R2L5 SMR:Q8R2L5 STRING:Q8R2L5
PhosphoSite:Q8R2L5 PaxDb:Q8R2L5 PRIDE:Q8R2L5
Ensembl:ENSMUST00000016977 GeneID:68735 KEGG:mmu:68735
UCSC:uc008yib.1 InParanoid:Q8R2L5 NextBio:327806 Bgee:Q8R2L5
CleanEx:MM_MRPS18C Genevestigator:Q8R2L5
GermOnline:ENSMUSG00000016833 Uniprot:Q8R2L5
Length = 143
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 180 DFRNVKFLTQFITE-AGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++NV+ L+QFI+ G I R ++G+ K QR++ + IK A+ G MP T
Sbjct: 74 DYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFMPVT 124
>UNIPROTKB|P66465 [details] [associations]
symbol:rpsR2 "30S ribosomal protein S18 2" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_00270
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0005886 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 EMBL:BX842578 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
PIR:F70945 RefSeq:NP_216571.1 RefSeq:NP_336581.1
RefSeq:YP_006515467.1 ProteinModelPortal:P66465 SMR:P66465
EnsemblBacteria:EBMYCT00000002871 EnsemblBacteria:EBMYCT00000070714
GeneID:13316858 GeneID:887817 GeneID:924624 KEGG:mtc:MT2116
KEGG:mtu:Rv2055c KEGG:mtv:RVBD_2055c PATRIC:18126414
TubercuList:Rv2055c OMA:MAPSARN ProtClustDB:PRK13401 Uniprot:P66465
Length = 88
Score = 100 (40.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPF 228
+E D+++ L FI++ G I R ++G++ + QR+VA+ IK AR L+P+
Sbjct: 23 VESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMALLPY 75
>RGD|1307997 [details] [associations]
symbol:Mrps18c "mitochondrial ribosomal protein S18C"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 ProDom:PD002239
PROSITE:PS00057 RGD:1307997 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 CTD:51023 GeneTree:ENSGT00390000003791
OMA:DPKICNI OrthoDB:EOG44J2KC EMBL:CH474022 IPI:IPI00198330
RefSeq:NP_001099466.1 UniGene:Rn.105741 Ensembl:ENSRNOT00000002962
GeneID:289469 KEGG:rno:289469 NextBio:629867 Uniprot:D4A4V1
Length = 143
Score = 103 (41.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 180 DFRNVKFLTQFITE-AGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++NV+ L+QFI+ G I R ++G+ K Q++V + IK A+ G MP T
Sbjct: 74 DYKNVQLLSQFISPFTGCIYGRHITGLCGKKQKEVTKAIKRAQKMGFMPVT 124
>TIGR_CMR|ECH_0309 [details] [associations]
symbol:ECH_0309 "putative ribosomal protein S18"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
OMA:ENIDTAN ProtClustDB:PRK00391 RefSeq:YP_507130.1
ProteinModelPortal:Q2GHF3 SMR:Q2GHF3 STRING:Q2GHF3 GeneID:3927963
KEGG:ech:ECH_0309 PATRIC:20576123
BioCyc:ECHA205920:GJNR-309-MONOMER Uniprot:Q2GHF3
Length = 95
Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 141 SFKTGMT-YEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIK 199
S +G T Y P L +P ++++ E ED D++N L++F +E G I+
Sbjct: 10 SNNSGATAYSPLAY-LKRPYFKRSKACPLEQCPN---EDIDYKNKGLLSKFTSEYGRILP 65
Query: 200 RSMSGISAKAQRKVAREIKTARAFGLMPF 228
++ +S++ QR ++ +K AR L+P+
Sbjct: 66 SRITSVSSRKQRLLSTAVKRARYLALLPY 94
>UNIPROTKB|Q9Y3D5 [details] [associations]
symbol:MRPS18C "28S ribosomal protein S18c, mitochondrial"
species:9606 "Homo sapiens" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] [GO:0006412 "translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=NAS] InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 UniGene:Hs.334772 Gene3D:4.10.640.10
PANTHER:PTHR13479 SUPFAM:SSF46911 TIGRFAMs:TIGR00165
HOGENOM:HOG000218466 CTD:51023 eggNOG:NOG242052 HOVERGEN:HBG068938
OMA:DPKICNI OrthoDB:EOG44J2KC EMBL:AF151892 EMBL:BC005186
IPI:IPI00007049 RefSeq:NP_057151.1 UniGene:Hs.436161
ProteinModelPortal:Q9Y3D5 SMR:Q9Y3D5 STRING:Q9Y3D5
PhosphoSite:Q9Y3D5 DMDM:24212202 PaxDb:Q9Y3D5 PeptideAtlas:Q9Y3D5
PRIDE:Q9Y3D5 DNASU:51023 Ensembl:ENST00000295491 GeneID:51023
KEGG:hsa:51023 UCSC:uc003hor.4 GeneCards:GC04P084301
H-InvDB:HIX0034634 HGNC:HGNC:16633 HPA:HPA050404 MIM:611983
neXtProt:NX_Q9Y3D5 PharmGKB:PA31005 InParanoid:Q9Y3D5
PhylomeDB:Q9Y3D5 ChiTaRS:MRPS18C GenomeRNAi:51023 NextBio:53554
ArrayExpress:Q9Y3D5 Bgee:Q9Y3D5 CleanEx:HS_MRPS18C
Genevestigator:Q9Y3D5 GermOnline:ENSG00000163319 Uniprot:Q9Y3D5
Length = 142
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 180 DFRNVKFLTQFITE-AGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++NV+ L+QF++ G I R ++G+ K Q+++ + IK A+ G MP T
Sbjct: 73 DYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVT 123
>UNIPROTKB|F1NCZ4 [details] [associations]
symbol:F1NCZ4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA]
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 GeneTree:ENSGT00390000003791 OMA:DPKICNI
EMBL:AADN02009041 IPI:IPI00811756 Ensembl:ENSGALT00000038003
Uniprot:F1NCZ4
Length = 106
Score = 94 (38.1 bits), Expect = 0.00024, P = 0.00024
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 178 DADFRNVKFLTQFITE-AGIIIKRSMSGISAKAQRKVAREIKTARAFGLMP 227
+ D++NV+ L+QF++ G I R ++G+ K Q+++++ IK A G MP
Sbjct: 36 NVDYKNVQLLSQFVSPYTGRIYGRHITGLCNKKQKEISKAIKRAHILGFMP 86
>TIGR_CMR|GSU_0666 [details] [associations]
symbol:GSU_0666 "ribosomal protein S18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00270
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:RRRYCRF RefSeq:NP_951723.1
ProteinModelPortal:Q74FE3 GeneID:2685555 KEGG:gsu:GSU0666
PATRIC:22024091 BioCyc:GSUL243231:GH27-685-MONOMER Uniprot:Q74FE3
Length = 103
Score = 92 (37.4 bits), Expect = 0.00041, P = 0.00041
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFTT 230
D+++ + L FITE G I+ R +SG + QR++ IK AR L+P +
Sbjct: 48 DYKDPRVLRSFITERGKIVPRRISGNCSAHQREITEAIKRARNIALIPIAS 98
>ZFIN|ZDB-GENE-060503-609 [details] [associations]
symbol:mrps18c "mitochondrial ribosomal protein
S18C" species:7955 "Danio rerio" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR001648 InterPro:IPR018275
Pfam:PF01084 ProDom:PD002239 PROSITE:PS00057
ZFIN:ZDB-GENE-060503-609 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:BX649525 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 eggNOG:NOG242052 GeneTree:ENSGT00390000003791
HOVERGEN:HBG068938 OMA:DPKICNI IPI:IPI00611405 UniGene:Dr.113357
STRING:Q1LVP7 Ensembl:ENSDART00000101462 InParanoid:Q1LVP7
Uniprot:Q1LVP7
Length = 136
Score = 97 (39.2 bits), Expect = 0.00045, P = 0.00045
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 180 DFRNVKFLTQFIT-EAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
DF+NV+ L+QFI+ G I R ++G+ + Q++V + IK +R+ G M T
Sbjct: 67 DFKNVQLLSQFISPHTGRIYGRHITGLCGRKQKEVTKAIKKSRSMGFMSVT 117
>POMBASE|SPCC18B5.04 [details] [associations]
symbol:rsm18 "mitochondrial ribosomal protein subunit
S18 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR001648 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 PomBase:SPCC18B5.04 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0032543 GO:GO:0005763
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911 eggNOG:COG0238
PIR:T41197 RefSeq:NP_587934.1 ProteinModelPortal:Q9USL7
STRING:Q9USL7 EnsemblFungi:SPCC18B5.04.1 GeneID:2538921
KEGG:spo:SPCC18B5.04 OMA:ERDEMND OrthoDB:EOG40CMSP NextBio:20800099
Uniprot:Q9USL7
Length = 166
Score = 104 (41.7 bits), Expect = 0.00046, P = 0.00046
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 141 SFKTGMTYEPKDLDLTKPGVRKTRRVEF-----EVTTKKVLEDAD--FRNVKFLTQFITE 193
S + G Y P DL L + V+ + +F E K V E+ ++N L++F+TE
Sbjct: 65 SVEEGDIYSPNDL-LFET-VKAKNQAKFYEPVREDCFKTVNENPMNYWKNPVILSRFVTE 122
Query: 194 AGIIIKRSMSGISAKAQRKVAREIKTARAFGLMP 227
G I R +G++AK QR ++R I+ ARA G+MP
Sbjct: 123 LGRIKPRGDTGLTAKNQRLLSRAIRRARAAGIMP 156
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 228 0.00081 113 3 11 22 0.40 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 525 (56 KB)
Total size of DFA: 137 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.13u 0.12s 17.25t Elapsed: 00:00:01
Total cpu time: 17.13u 0.12s 17.25t Elapsed: 00:00:01
Start: Fri May 10 14:17:13 2013 End: Fri May 10 14:17:14 2013