BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024580
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q19V75|RR18_CHLAT 30S ribosomal protein S18, chloroplastic OS=Chlorokybus
atmophyticus GN=rps18 PE=3 SV=2
Length = 71
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 177 EDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPF 228
E D++N+ L+QFITE G I+ R ++GISAK QR + + IK AR L+PF
Sbjct: 15 ETIDYKNIDLLSQFITEQGKILPRRVNGISAKQQRAITKAIKQARFLALLPF 66
>sp|C1CXK0|RS18_DEIDV 30S ribosomal protein S18 OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=rpsR PE=3 SV=1
Length = 92
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
LE D+++VK L +F+++ G I+ R +G+SAK QR++A+ IK AR L+P+T
Sbjct: 33 LEITDYKDVKMLRRFVSDTGKILPRRRTGLSAKHQRRIAQTIKVARQLALLPYT 86
>sp|Q9RY50|RS18_DEIRA 30S ribosomal protein S18 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=rpsR PE=3 SV=1
Length = 92
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
LE D+++VK L +F+++ G I+ R +G+SAK QR++A+ IK AR L+P+T
Sbjct: 33 LEITDYKDVKMLRRFVSDTGKILPRRRTGLSAKHQRRIAQTIKVARQLALLPYT 86
>sp|Q1GC35|RS18_LACDA 30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=rpsR PE=3
SV=1
Length = 78
Score = 58.2 bits (139), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPF 228
D+++V L FI+E G I+ RS++G SAK QRKVA IK AR GL+PF
Sbjct: 26 DYKDVDLLKHFISERGKILPRSVTGTSAKNQRKVANAIKRARIMGLLPF 74
>sp|Q5SLQ0|RS18_THET8 30S ribosomal protein S18 OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=rpsR PE=1 SV=3
Length = 88
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D+RNV+ L +F++E G I+ R +G+SAK QR +A+ IK AR GL+PFT
Sbjct: 33 DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFT 82
>sp|P62659|RS18_THET2 30S ribosomal protein S18 OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=rpsR PE=1 SV=2
Length = 88
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D+RNV+ L +F++E G I+ R +G+SAK QR +A+ IK AR GL+PFT
Sbjct: 33 DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFT 82
>sp|Q1J217|RS18_DEIGD 30S ribosomal protein S18 OS=Deinococcus geothermalis (strain DSM
11300) GN=rpsR PE=3 SV=1
Length = 91
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
LE D+++VK L +FI++ G I+ R +G+SAK QR++++ IK AR L+P+T
Sbjct: 32 LEITDYKDVKMLRRFISDTGKILPRRRTGLSAKHQRRISQTIKIARQLALLPYT 85
>sp|A8Z621|RS18_SULMW 30S ribosomal protein S18 OS=Sulcia muelleri (strain GWSS) GN=rpsR
PE=3 SV=1
Length = 180
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 130 DKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQ 189
DK+ Y+ D + + YEP+ LT + ++ K ++ DF+N FL +
Sbjct: 79 DKESYS---DKNILVKIFYEPEIRYLTPLEIETKPENKYCFFKKNNIKYIDFKNPSFLMK 135
Query: 190 FITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFTTMGTK 234
F+ E G I+ R ++G S K Q+K+ R IK + GL+P+ T G +
Sbjct: 136 FLNERGEILPRRITGTSKKFQKKLKRAIKKCKHIGLLPYLTDGLR 180
>sp|P80382|RS18_THETH 30S ribosomal protein S18 OS=Thermus thermophilus GN=rpsR PE=1 SV=3
Length = 88
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D+RNV+ L +F++E G I+ R +G+S K QR +A+ IK AR GL+PFT
Sbjct: 33 DYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFT 82
>sp|Q04CW7|RS18_LACDB 30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=rpsR PE=3 SV=1
Length = 78
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPF 228
D+++V L FI+E G I+ R ++G SAK QRKVA IK AR GL+PF
Sbjct: 26 DYKDVDLLKHFISERGKILPRRVTGTSAKNQRKVANAIKRARIMGLLPF 74
>sp|B2S1U7|RS18_BORHD 30S ribosomal protein S18 OS=Borrelia hermsii (strain DAH) GN=rpsR
PE=3 SV=1
Length = 96
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++ FL +FITE G I+ R ++G SAK QR++A EIK AR L+PF
Sbjct: 45 DYKEFDFLKKFITEQGKILPRRITGTSAKHQRRLALEIKKARYMALLPFV 94
>sp|Q03UT3|RS18_LEUMM 30S ribosomal protein S18 OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=rpsR PE=3
SV=1
Length = 94
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFTT 230
+E D++N + L +FI+E G I+ R ++G SAK QRKV IK AR L+PF T
Sbjct: 38 IEYIDYKNTELLERFISERGKILPRRVTGTSAKNQRKVTTAIKRARIMALLPFVT 92
>sp|Q03IV5|RS18_STRTD 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F+ +E D+++ + L++F++E G I+ R ++G SAK QRKV IK AR
Sbjct: 11 RRKKFDYIAANKIEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIKRARVM 70
Query: 224 GLMPFT 229
LMP+
Sbjct: 71 ALMPYV 76
>sp|Q5M2Q5|RS18_STRT2 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F+ +E D+++ + L++F++E G I+ R ++G SAK QRKV IK AR
Sbjct: 11 RRKKFDYIAANKIEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIKRARVM 70
Query: 224 GLMPFT 229
LMP+
Sbjct: 71 ALMPYV 76
>sp|Q5LY50|RS18_STRT1 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAF 223
RR +F+ +E D+++ + L++F++E G I+ R ++G SAK QRKV IK AR
Sbjct: 11 RRKKFDYIAANKIEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIKRARVM 70
Query: 224 GLMPFT 229
LMP+
Sbjct: 71 ALMPYV 76
>sp|B5RQU0|RS18_BORRA 30S ribosomal protein S18 OS=Borrelia recurrentis (strain A1)
GN=rpsR PE=3 SV=1
Length = 96
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++ FL +FITE G I+ R ++G SAK QR++A EIK AR L+PF
Sbjct: 45 DYKEFDFLKKFITEQGKILPRRITGTSAKHQRRLALEIKKARYMALLPFV 94
>sp|B5RLI7|RS18_BORDL 30S ribosomal protein S18 OS=Borrelia duttonii (strain Ly) GN=rpsR
PE=3 SV=1
Length = 96
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 180 DFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
D++ FL +FITE G I+ R ++G SAK QR++A EIK AR L+PF
Sbjct: 45 DYKEFDFLKKFITEQGKILPRRITGTSAKHQRRLALEIKKARYMALLPFV 94
>sp|B5E6A4|RS18_STRP4 30S ribosomal protein S18 OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTXAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|A8YW49|RS18_LACH4 30S ribosomal protein S18 OS=Lactobacillus helveticus (strain DPC
4571) GN=rpsR PE=3 SV=1
Length = 77
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFTT 230
++ D+++V L +FI+E G I+ R ++G SAK QRKVA IK AR GL+PF
Sbjct: 21 IDYVDYKDVDLLKRFISERGKILPRRVTGTSAKNQRKVANAIKRARIMGLLPFVA 75
>sp|B2S209|RS18_TREPS 30S ribosomal protein S18 OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=rpsR PE=3 SV=1
Length = 99
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 TTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
T+K+L AD+++ L +FITE G I+ R ++G AK QR+VA E+K +RA L+PF
Sbjct: 40 CTQKLL--ADYKDPDTLRRFITERGKILPRRITGTCAKHQRRVALEVKRSRAVALLPFV 96
>sp|O83100|RS18_TREPA 30S ribosomal protein S18 OS=Treponema pallidum (strain Nichols)
GN=rpsR PE=3 SV=1
Length = 99
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 171 TTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
T+K+L AD+++ L +FITE G I+ R ++G AK QR+VA E+K +RA L+PF
Sbjct: 40 CTQKLL--ADYKDPDTLRRFITERGKILPRRITGTCAKHQRRVALEVKRSRAVALLPFV 96
>sp|B1MWV2|RS18_LEUCK 30S ribosomal protein S18 OS=Leuconostoc citreum (strain KM20)
GN=rpsR PE=3 SV=1
Length = 94
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 176 LEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFTT 230
+E D++N + L +FI+E G I+ R ++G SAK QRKV IK AR L+PF T
Sbjct: 38 IEFIDYKNTELLERFISERGKILPRRVTGTSAKNQRKVTTAIKRARIMALLPFVT 92
>sp|Q9MUP6|RR18_MESVI 30S ribosomal protein S18, chloroplastic OS=Mesostigma viride
GN=rps18 PE=3 SV=1
Length = 71
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 177 EDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPF 228
+ D++N+ L+QFITE G I+ R ++ ISAK QR + + IK AR L+PF
Sbjct: 15 DSIDYKNIDLLSQFITEQGKILPRRVNNISAKQQRAITKAIKQARFLTLLPF 66
>sp|B0SSW0|RS18_LEPBP 30S ribosomal protein S18 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rpsR PE=3 SV=1
Length = 94
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 170 VTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
K +L D++ V L +F+T G II R ++G K QR +AREI+ +R+ GL+PF
Sbjct: 33 CADKALLAGLDYKRVDILERFVTNRGKIIPRRITGTCGKHQRALAREIRKSRSIGLLPFK 92
Query: 230 TM 231
+
Sbjct: 93 VL 94
>sp|B0SB38|RS18_LEPBA 30S ribosomal protein S18 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rpsR PE=3 SV=1
Length = 94
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 170 VTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIKTARAFGLMPFT 229
K +L D++ V L +F+T G II R ++G K QR +AREI+ +R+ GL+PF
Sbjct: 33 CADKALLAGLDYKRVDILERFVTNRGKIIPRRITGTCGKHQRALAREIRKSRSIGLLPFK 92
Query: 230 TM 231
+
Sbjct: 93 VL 94
>sp|C1CSF7|RS18_STRZT 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|C1CLN8|RS18_STRZP 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain
P1031) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|C1CFC0|RS18_STRZJ 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain JJA)
GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|B9DVK2|RS18_STRU0 30S ribosomal protein S18 OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|A3CL34|RS18_STRSV 30S ribosomal protein S18 OS=Streptococcus sanguinis (strain SK36)
GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|C0MEL9|RS18_STRS7 30S ribosomal protein S18 OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|P66473|RS18_STRR6 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|B2IR58|RS18_STRPS 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain
CGSP14) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|P0DE81|RS18_STRPQ 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|P66472|RS18_STRPN 30S ribosomal protein S18 OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|Q48RL0|RS18_STRPM 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|B8ZLD9|RS18_STRPJ 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|B1ICV9|RS18_STRPI 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|A2RCR6|RS18_STRPG 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|Q1J524|RS18_STRPF 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|Q1JF74|RS18_STRPD 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|Q1JK78|RS18_STRPC 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|Q1JA31|RS18_STRPB 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|P66477|RS18_STRP8 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|C1C8C8|RS18_STRP7 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain
70585) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|Q5XA63|RS18_STRP6 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|P0DE80|RS18_STRP3 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|Q04JL0|RS18_STRP2 30S ribosomal protein S18 OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
>sp|P66475|RS18_STRP1 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M1
GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V+F K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDFIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMP+
Sbjct: 66 RARVMALMPYV 76
>sp|P66474|RS18_STRMU 30S ribosomal protein S18 OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpsR PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 159 GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMSGISAKAQRKVAREIK 218
G ++ ++V++ K +E D+++ + L++F++E G I+ R ++G SAK QRKV IK
Sbjct: 8 GFKRRKKVDYIAANK--IEYVDYKDTELLSRFVSERGKILPRRVTGTSAKNQRKVTTAIK 65
Query: 219 TARAFGLMPFT 229
AR LMPF
Sbjct: 66 RARVMALMPFV 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,522,135
Number of Sequences: 539616
Number of extensions: 4486349
Number of successful extensions: 14880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 13947
Number of HSP's gapped (non-prelim): 954
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)