BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024581
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D68|A Chain A, Structure Of The N-Terminal Domain Of Fop (Fgfr1op)
           Protein
 pdb|2D68|B Chain B, Structure Of The N-Terminal Domain Of Fop (Fgfr1op)
           Protein
          Length = 82

 Score = 32.0 bits (71), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 62  NDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPE 100
           N+  K+   +  GRL+ +L+ E+L +  L+ T+ V+ PE
Sbjct: 6   NESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPE 44


>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
           Complex
 pdb|2WTK|F Chain F, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
           Complex
          Length = 305

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 25/108 (23%)

Query: 112 LKEFSSKNGYDLNKN---------GDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESM 162
           L  F   N Y L +N         GD  P L D+L+G L++E + +  I   RQ      
Sbjct: 210 LYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ------ 263

Query: 163 SHFESRNARRPSSSSVAGGLPPLGRPIPASQASDRRAAGSSMSAYRKD 210
            H   R    P+ + V         PIP S  +  R    ++  Y +D
Sbjct: 264 -HSWFRKKHPPAEAPV---------PIPPSPDTKDRWRSMTVVPYLED 301


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,862,788
Number of Sequences: 62578
Number of extensions: 305209
Number of successful extensions: 604
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 2
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)