Query 024581
Match_columns 265
No_of_seqs 131 out of 192
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d68_A FOP, FGFR1OP; alpha hel 99.9 3.3E-23 1.1E-27 160.2 3.8 77 61-139 5-81 (82)
2 2xtc_A F-box-like/WD repeat-co 85.1 0.32 1.1E-05 37.9 1.5 30 76-105 7-36 (90)
3 3mhs_B Protein SUS1; multi-pro 71.3 5.2 0.00018 31.1 4.6 72 5-86 19-90 (96)
4 1uuj_A Platelet-activating fac 59.1 3.7 0.00013 31.7 1.6 30 76-105 12-41 (88)
5 4dhx_B Enhancer of yellow 2 tr 44.0 33 0.0011 26.7 4.9 30 7-36 25-54 (101)
6 3mhs_B Protein SUS1; multi-pro 43.7 21 0.00073 27.5 3.7 33 5-37 2-34 (96)
7 4dhx_B Enhancer of yellow 2 tr 38.8 34 0.0012 26.6 4.2 30 8-37 9-38 (101)
8 1vyh_C Platelet-activating fac 25.4 15 0.00051 32.5 0.0 29 76-104 10-38 (410)
9 1q1v_A DEK protein; winged-hel 21.2 1E+02 0.0036 22.2 3.9 16 71-86 52-67 (70)
10 1kaf_A Transcription regulator 19.6 63 0.0021 25.8 2.5 20 5-24 4-23 (108)
No 1
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=99.87 E-value=3.3e-23 Score=160.17 Aligned_cols=77 Identities=25% Similarity=0.442 Sum_probs=70.3
Q ss_pred CcccccccCCCchhHHHHHHHHHHHHHcCCccccchhccccCCchHHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHH
Q 024581 61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG 139 (265)
Q Consensus 61 ~N~~~k~i~~s~eg~LineLI~EYLef~gl~yTLSVF~pESgl~~~~l~rEl~~L~~~LGL~~n~~~~~~PLL~qLLe~ 139 (265)
||+++|+++++++|+|+++||+|||+|+||+||++||+||||+++.+..| +.|+++||+..+..+.+.|||+.||++
T Consensus 5 ~N~~~k~~~~s~~GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R--~~La~eLgl~~~~~~~~~PLL~~ll~~ 81 (82)
T 2d68_A 5 VNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGR--ENLARDLGIIEAEGTVGGPLLLEVIRR 81 (82)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCH--HHHHHHTTCCCCTTTTTSCHHHHHHHH
T ss_pred ccHHHHHHHcCcccHHHHHHHHHHHHHcCCcchHHhhhhccCCCCCCCCH--HHHHHHcCCCCCCCCCCCCcHHHHHhh
Confidence 99999999999999999999999999999999999999999999777776 579999999988888899999999986
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=85.06 E-value=0.32 Score=37.85 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCccccchhccccCCch
Q 024581 76 LLTALICEYLDWAQLNHTMKVYLPECNLQK 105 (265)
Q Consensus 76 LineLI~EYLef~gl~yTLSVF~pESgl~~ 105 (265)
-+|-||.-||+-.||.||..+|..|+++..
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 478999999999999999999999999865
No 3
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=71.29 E-value=5.2 Score=31.07 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccCcCcccccccCCCchhHHHHHHHHHH
Q 024581 5 TREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEY 84 (265)
Q Consensus 5 t~E~~ELKdlV~qtLEk~GVL~KIRAqLRA~Vf~aLdee~~~~~k~~~~pP~L~~s~N~~~k~i~~s~eg~LineLI~EY 84 (265)
+.|-+.|+++|.+.|.+.|--++||+..|+.+.+. +. -. -..|+.-.-|++....+..-..-+..=|++|
T Consensus 19 SGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~-~~-vt--------~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~f 88 (96)
T 3mhs_B 19 SGNYELISNELKARLLQEGWVDKVKDLTKSEMNIN-ES-TN--------FTQILSTVEPKALEMVSDSTRETVLKQIREF 88 (96)
T ss_dssp TTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TC-CC--------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc-CC-CC--------HHHHHHHHhHHHHHHCCHHHHHHHHHHHHHH
Confidence 34667788888888888888888888888777554 11 00 0011111223334333333344577788888
Q ss_pred HH
Q 024581 85 LD 86 (265)
Q Consensus 85 Le 86 (265)
|+
T Consensus 89 L~ 90 (96)
T 3mhs_B 89 LE 90 (96)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 4
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=59.13 E-value=3.7 Score=31.73 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCccccchhccccCCch
Q 024581 76 LLTALICEYLDWAQLNHTMKVYLPECNLQK 105 (265)
Q Consensus 76 LineLI~EYLef~gl~yTLSVF~pESgl~~ 105 (265)
-++-=|.+||.++||.-+..+|..|++++.
T Consensus 12 EL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 12 ELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence 468889999999999999999999998764
No 5
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=43.99 E-value=33 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 024581 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASV 36 (265)
Q Consensus 7 E~~ELKdlV~qtLEk~GVL~KIRAqLRA~V 36 (265)
|-+.|+++|.+.|.+.|--++||+..|+.+
T Consensus 25 e~erL~~lL~~rL~EcGW~Devr~~~r~~i 54 (101)
T 4dhx_B 25 ERERLKELLRAKLIECGWKDQLKAHCKEVI 54 (101)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 445555555556666666555555555444
No 6
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=43.70 E-value=21 Score=27.54 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 024581 5 TREMMDLKTLVTRTLEKKGVLAKIRAELRASVF 37 (265)
Q Consensus 5 t~E~~ELKdlV~qtLEk~GVL~KIRAqLRA~Vf 37 (265)
|....+||..|.+.|-++|-..+|+..||..+.
T Consensus 2 ~~~~~~lk~~I~~~LveSGe~erL~~lL~~rL~ 34 (96)
T 3mhs_B 2 TMDTAQLKSQIQQYLVESGNYELISNELKARLL 34 (96)
T ss_dssp ---CTHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 444568999999999999999999999987654
No 7
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=38.77 E-value=34 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 024581 8 MMDLKTLVTRTLEKKGVLAKIRAELRASVF 37 (265)
Q Consensus 8 ~~ELKdlV~qtLEk~GVL~KIRAqLRA~Vf 37 (265)
..+||..|.+.|-++|-..+|+..||..+.
T Consensus 9 e~~lka~I~~~LveSGe~erL~~lL~~rL~ 38 (101)
T 4dhx_B 9 DAQMRAAINQKLIETGERERLKELLRAKLI 38 (101)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999987664
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=25.38 E-value=15 Score=32.54 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCccccchhccccCCc
Q 024581 76 LLTALICEYLDWAQLNHTMKVYLPECNLQ 104 (265)
Q Consensus 76 LineLI~EYLef~gl~yTLSVF~pESgl~ 104 (265)
-++.+|..||..+||.-|+.+|..|++.+
T Consensus 10 ~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 10 ELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 46789999999999999999999999865
No 9
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=21.15 E-value=1e+02 Score=22.24 Aligned_cols=16 Identities=6% Similarity=0.227 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHHHH
Q 024581 71 SPSGRLLTALICEYLD 86 (265)
Q Consensus 71 s~eg~LineLI~EYLe 86 (265)
++-...|+.+|.+||.
T Consensus 52 s~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 52 TERKDFIKTTVKELIS 67 (70)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4555689999999985
No 10
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=19.61 E-value=63 Score=25.82 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhch
Q 024581 5 TREMMDLKTLVTRTLEKKGV 24 (265)
Q Consensus 5 t~E~~ELKdlV~qtLEk~GV 24 (265)
|.||+++++.+.+.|+++|+
T Consensus 4 T~eMe~~~d~~~e~l~~~~i 23 (108)
T 1kaf_A 4 TSDMEEDKDLMLKLLDKNGF 23 (108)
T ss_dssp CHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhhhcCc
Confidence 78999999999999988875
Done!