Query 024581
Match_columns 265
No_of_seqs 131 out of 192
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024581.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024581hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uuja_ a.221.1.1 (A:) Lissenc 54.7 2.3 0.00017 30.3 1.6 29 76-104 9-37 (76)
2 d1whra_ d.68.7.1 (A:) R3H doma 31.1 43 0.0032 24.8 5.7 63 10-92 14-76 (124)
3 d1w26a1 a.223.1.1 (A:248-432) 31.0 49 0.0036 24.8 6.2 37 7-44 15-51 (185)
4 d1kafa_ d.199.1.1 (A:) DNA-bin 24.7 20 0.0015 26.6 2.5 21 4-24 3-23 (108)
5 d1t11a1 a.223.1.1 (A:248-376) 22.2 17 0.0013 26.0 1.8 62 7-92 15-79 (129)
6 d1a62a1 a.140.3.1 (A:1-47) Rho 20.9 28 0.0021 22.0 2.4 33 110-142 12-44 (47)
7 d1q1va_ a.159.4.1 (A:) DEK C-t 16.7 64 0.0047 21.7 3.7 16 71-86 52-67 (70)
8 d1xp8a2 d.48.1.1 (A:283-341) R 14.7 71 0.0052 20.9 3.3 26 12-40 33-58 (59)
9 d2pkgc1 g.92.1.1 (C:91-170) Sm 14.0 24 0.0018 25.0 0.7 18 81-98 51-68 (80)
10 d2b4va1 a.160.1.4 (A:289-471) 13.9 34 0.0025 25.4 1.7 87 10-103 6-106 (183)
No 1
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.70 E-value=2.3 Score=30.26 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCccccchhccccCCc
Q 024581 76 LLTALICEYLDWAQLNHTMKVYLPECNLQ 104 (265)
Q Consensus 76 LineLI~EYLef~gl~yTLSVF~pESgl~ 104 (265)
-+|-=|.+||..+||.-|+.+|..|.+++
T Consensus 9 eL~kaI~~Yl~~~~~~~~~~~l~~e~~l~ 37 (76)
T d1uuja_ 9 ELNRAIADYLRSNGYEEAYSVFKKEAELD 37 (76)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence 46778999999999999999999999876
No 2
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.06 E-value=43 Score=24.77 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccCcCcccccccCCCchhHHHHHHHHHHHHHcC
Q 024581 10 DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQ 89 (265)
Q Consensus 10 ELKdlV~qtLEk~GVL~KIRAqLRA~Vf~aLdee~~~~~k~~~~pP~L~~s~N~~~k~i~~s~eg~LineLI~EYLef~g 89 (265)
+|...+.++|+++.---.+-.+|...+.+.|.+... +.+..++-+..--.||+++-+++|
T Consensus 14 dl~~fl~~~l~~~~~dr~fil~lE~~l~~Fi~d~~~--------------------~~~~fppM~s~~R~~vH~lAe~yg 73 (124)
T d1whra_ 14 DLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNN--------------------QFKKFPQMTSYHRMLLHRVAAYFG 73 (124)
T ss_dssp CHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSC--------------------CEEECCCCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcChHhHHHHHHHHHHHHHHHhCCcc--------------------ceeECCCCCHHHHHHHHHHHHHhC
Confidence 366778888988887666666777777777764321 011122335666778999999999
Q ss_pred Ccc
Q 024581 90 LNH 92 (265)
Q Consensus 90 l~y 92 (265)
|.+
T Consensus 74 L~s 76 (124)
T d1whra_ 74 MDH 76 (124)
T ss_dssp CCE
T ss_pred Ccc
Confidence 987
No 3
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.00 E-value=49 Score=24.81 Aligned_cols=37 Identities=16% Similarity=0.412 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhh
Q 024581 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEED 44 (265)
Q Consensus 7 E~~ELKdlV~qtLEk~GVL~KIRAqLRA~Vf~aLdee~ 44 (265)
.+++||+.|++.|+.. .-.+.+..++..|+..|-+..
T Consensus 15 tleelk~~ik~~l~~~-~~~~~~~~~~~~i~~~L~~~~ 51 (185)
T d1w26a1 15 SVEGLRAEVRKNMERE-LKSAIRNRVKSQAIEGLVKAN 51 (185)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence 4789999999999864 567788889999999998754
No 4
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=24.69 E-value=20 Score=26.60 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhch
Q 024581 4 YTREMMDLKTLVTRTLEKKGV 24 (265)
Q Consensus 4 ~t~E~~ELKdlV~qtLEk~GV 24 (265)
-|-||.+|++.|...|+++|+
T Consensus 3 iT~eM~~l~d~v~~ll~~n~i 23 (108)
T d1kafa_ 3 ITSDMEEDKDLMLKLLDKNGF 23 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhhhcce
Confidence 378999999999999988876
No 5
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=22.20 E-value=17 Score=26.04 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccCcCcccccccCCCchhH---HHHHHHHH
Q 024581 7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGR---LLTALICE 83 (265)
Q Consensus 7 E~~ELKdlV~qtLEk~GVL~KIRAqLRA~Vf~aLdee~~~~~k~~~~pP~L~~s~N~~~k~i~~s~eg~---LineLI~E 83 (265)
.+++||+.|++.|+. ....+.+..++..|+..|-+... + .-|+.. -+..++.+
T Consensus 15 tleelk~~ik~~l~~-~~~~~~~~~~~~~i~~~L~~~~~----------------------~-elPe~lv~~e~~~~~~~ 70 (129)
T d1t11a1 15 GVDALKAEVRKNMER-ELKQAIKARIKEQAIEGLVKENE----------------------I-QVPSALIDQEINVLRQQ 70 (129)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTCTTBCSCCC----------------------E-EECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCC----------------------C-CCCHHHHHHHHHHHHHH
Confidence 466777777777763 34455555555555555543321 0 113333 46678888
Q ss_pred HHHHcCCcc
Q 024581 84 YLDWAQLNH 92 (265)
Q Consensus 84 YLef~gl~y 92 (265)
|.+-++...
T Consensus 71 ~~~~~~~~~ 79 (129)
T d1t11a1 71 AAQRFGGNV 79 (129)
T ss_dssp HHHHSSCSH
T ss_pred HHHHhhhcc
Confidence 888777654
No 6
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.90 E-value=28 Score=22.03 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccHHHHHHHHhh
Q 024581 110 AELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLK 142 (265)
Q Consensus 110 rEl~~L~~~LGL~~n~~~~~~PLL~qLLe~~lk 142 (265)
.||.++|.++||.....-++.=|++.|+....+
T Consensus 12 ~EL~~iA~~lgIen~~~lrKQeLif~ILk~~ae 44 (47)
T d1a62a1 12 SELITLGENMGLENLARMRKQDIIFAILKQHAK 44 (47)
T ss_dssp HHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcccccHHHHHHHHHHHHHH
Confidence 468899999999876666778889999887543
No 7
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.69 E-value=64 Score=21.71 Aligned_cols=16 Identities=6% Similarity=0.227 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHHHH
Q 024581 71 SPSGRLLTALICEYLD 86 (265)
Q Consensus 71 s~eg~LineLI~EYLe 86 (265)
++-...|+++|.+||.
T Consensus 52 ~~rK~~I~~~I~~~Ls 67 (70)
T d1q1va_ 52 TERKDFIKTTVKELIS 67 (70)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556689999999985
No 8
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=14.70 E-value=71 Score=20.92 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 024581 12 KTLVTRTLEKKGVLAKIRAELRASVFEAI 40 (265)
Q Consensus 12 KdlV~qtLEk~GVL~KIRAqLRA~Vf~aL 40 (265)
|+.+++.|+++ .+|..+|+..|..+|
T Consensus 33 re~a~~~L~en---pel~~eie~~i~~~l 58 (59)
T d1xp8a2 33 KEKTIAYIAER---PEMEQEIRDRVMAAI 58 (59)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHHHHHHHHHh
Confidence 56677778777 566777777777665
No 9
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]}
Probab=13.98 E-value=24 Score=25.01 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHcCCccccchhc
Q 024581 81 ICEYLDWAQLNHTMKVYL 98 (265)
Q Consensus 81 I~EYLef~gl~yTLSVF~ 98 (265)
+.=|.+|||++.|..||.
T Consensus 51 y~Cy~~WFG~~~t~~~f~ 68 (80)
T d2pkgc1 51 FDCFRMWFGLDLCEGTLL 68 (80)
T ss_dssp HHHHHHHHTCCSSHHHHH
T ss_pred HHHHHHHhCCCchHHHHH
Confidence 345899999999999885
No 10
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=13.95 E-value=34 Score=25.40 Aligned_cols=87 Identities=14% Similarity=-0.088 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhchHHHHHHHH-----HHHHHHHHhhhhhhhhccCCCCCcccCcCcccc-------cccCCCchhHHH
Q 024581 10 DLKTLVTRTLEKKGVLAKIRAEL-----RASVFEAIEEEDRVIEKDEGLPPALLGSCNDRA-------KQLHASPSGRLL 77 (265)
Q Consensus 10 ELKdlV~qtLEk~GVL~KIRAqL-----RA~Vf~aLdee~~~~~k~~~~pP~L~~s~N~~~-------k~i~~s~eg~Li 77 (265)
.|--.|+...+.+|+-+..+..| =-=|+..|+.... ++.|.+. ...... .....+.+..-+
T Consensus 6 ~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sl 78 (183)
T d2b4va1 6 HTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQ------VLWVDPW-SLPHPAHLPRYPDFSPLYDCDPTEL 78 (183)
T ss_dssp HHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTS------SCCCCGG-GSCCGGGSCSSCCCCCCCCCCHHHH
T ss_pred eHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCC------CCCCCHH-HhccccccccccccccccCCCCCCH
Confidence 45567888888888876544322 2235666665321 1111110 000000 000112233457
Q ss_pred HHHHHHHHHHcC--CccccchhccccCC
Q 024581 78 TALICEYLDWAQ--LNHTMKVYLPECNL 103 (265)
Q Consensus 78 neLI~EYLef~g--l~yTLSVF~pESgl 103 (265)
.+|+.+||+|++ ++|...|.....|.
T Consensus 79 ~~Ll~~FF~~Y~~~fd~~~~~Isi~~g~ 106 (183)
T d2b4va1 79 GRLLHGFFIFYAHHFDYEREVVSLNRNR 106 (183)
T ss_dssp HHHHHHHHHHHHHSSCTTTEEBCSSSSS
T ss_pred HHHHHHHHHHhccccCHHHceeeeccCC
Confidence 889999999997 77777776665553
Done!