BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024582
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis
thaliana GN=At1g11780 PE=2 SV=2
Length = 345
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/266 (72%), Positives = 217/266 (81%), Gaps = 17/266 (6%)
Query: 1 MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASS 60
++EQ KWI+ESLTSFPQPPNRTNHNA YGPIDDLF + KE KVL++++
Sbjct: 96 LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQDD------------ 143
Query: 61 CTSNEDAHRWKFYEE-DIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
T+N +WKFYEE DI +CKSV ASVLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199
Query: 120 KKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
IPDALCQLA+ AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259
Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQ 239
LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG+PRIFT ENA+I +L+ +
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHGIPRIFTGEENADIGALESE 319
Query: 240 FSHEDDHFFLEYIRNSRININIRQVF 265
SHE HFF EYI+ SRININIRQVF
Sbjct: 320 LSHESGHFFAEYIKTSRININIRQVF 345
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium
discoideum GN=alkB PE=2 SV=1
Length = 393
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 146/273 (53%), Gaps = 39/273 (14%)
Query: 3 EQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGA-SSC 61
+Q KWI+ +L + PPN N F+GPI +L+ EK+++ EE S G D
Sbjct: 136 QQKKWIKHALEDYADPPNNNNITLFHGPIKNLWKN-GEKELINEELKSQGKHDDDEIEQP 194
Query: 62 TSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKK 121
T D + E + T R LL KL W TLG Q+ W+ R Y+ +++
Sbjct: 195 TRPLDKNG-----EPLPTYRQ----------LLDKLAWSTLGYQYQWTPRLYSEEF-YEE 238
Query: 122 IPDALCQLARRLAAPAMPIGEEFQP---EAAIVNYFGLGDTLGGHLDDMEADWSKPIVSM 178
PD L +L +++A I +F P EAA VN++ +GGHLDD E + KPI+S+
Sbjct: 239 FPDDLQELVQKIA-----IATKFDPYVAEAATVNFYSEDSIMGGHLDDAEQEMEKPIISI 293
Query: 179 SLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDL 238
S G A+FL+G ++R+ P+ +F+RSGD V+M G +R C+HGV +I + S DL
Sbjct: 294 SFGSTAVFLMGAETRDIAPVPLFIRSGDIVIMGGRSRYCYHGVAKIVEN-------SFDL 346
Query: 239 QFSHEDDHFFLEYI------RNSRININIRQVF 265
E+D L+Y +N R+NIN RQVF
Sbjct: 347 GLIDENDDQDLKYKIQWLKEKNRRVNINTRQVF 379
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus
GN=Alkbh1 PE=1 SV=1
Length = 389
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 119/242 (49%), Gaps = 23/242 (9%)
Query: 38 VKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKL 97
VK+ L ++ ++ +LD T E W E+ LR K + LL +L
Sbjct: 115 VKQCLKLYSQKPNVCNLD---KHMTKEETQGLW---EQSKEVLRSKEVTKRRPRSLLERL 168
Query: 98 RWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLG 157
RW TLG ++W + Y+ + P L L+ ++A G FQ EA I+NY+ L
Sbjct: 169 RWVTLGYHYNWDSKKYSADH-YTPFPSDLAFLSEQVATACGFQG--FQAEAGILNYYRLD 225
Query: 158 DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAREC 217
TLG H+D E D SKP++S S G AIFLLGG R++ P AMF+ SGD ++M+G +R
Sbjct: 226 STLGIHVDRSELDHSKPLLSFSFGQSAIFLLGGLKRDEAPTAMFMHSGDIMVMSGFSRLL 285
Query: 218 FHGVPRIFTDRENAEIA--------------SLDLQFSHEDDHFFLEYIRNSRININIRQ 263
H VPR+ + + SL S ED Y+R +R+N+ +RQ
Sbjct: 286 NHAVPRVLPHPDGECLPHCLETPLPAVLPSNSLVEPCSVEDWQVCATYLRTARVNMTVRQ 345
Query: 264 VF 265
V
Sbjct: 346 VL 347
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens
GN=ALKBH1 PE=1 SV=2
Length = 389
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 17/208 (8%)
Query: 72 FYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAR 131
+E+ LR K + LL KLRW T+G ++W + Y+ + P L L+
Sbjct: 143 LWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADH-YTPFPSDLGFLSE 201
Query: 132 RLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGK 191
++AA E+F+ EA I+NY+ L TLG H+D E D SKP++S S G AIFLLGG
Sbjct: 202 QVAAACG--FEDFRAEAGILNYYRLDSTLGIHVDRSELDHSKPLLSFSFGQSAIFLLGGL 259
Query: 192 SREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIA--------------SLD 237
R++ P AMF+ SGD ++M+G +R H VPR+ + E + S+
Sbjct: 260 QRDEAPTAMFMHSGDIMIMSGFSRLLNHAVPRVLPNPEGEGLPHCLEAPLPAVLPRDSMV 319
Query: 238 LQFSHEDDHFFLEYIRNSRININIRQVF 265
S ED Y++ +R+N+ +RQV
Sbjct: 320 EPCSMEDWQVCASYLKTARVNMTVRQVL 347
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=abh1 PE=2 SV=3
Length = 302
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 9/190 (4%)
Query: 75 EDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLA 134
E I G+T ++ +KLRW TLG Q+DW+ + Y P L ++
Sbjct: 118 ESIIDGLGETKPLTVDRLVHKKLRWVTLGEQYDWTTKEYPDPSKSPGFPKDLGDFVEKVV 177
Query: 135 APAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSRE 194
+ ++ EAAIVN++ GDTL H+D+ E D + P++S+S+G I+L+G +SR
Sbjct: 178 KESTDF-LHWKAEAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCIYLIGTESRS 236
Query: 195 DPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRN 254
+ P A+ L SGD V+M G +R+ FH VP+I + + + + + +I
Sbjct: 237 EKPSALRLHSGDVVIMTGTSRKAFHAVPKIIPNSTPNYLLTGNKAWDG--------WISR 288
Query: 255 SRININIRQV 264
R+N N+RQV
Sbjct: 289 KRVNFNVRQV 298
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli
(strain K12) GN=alkB PE=1 SV=1
Length = 216
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 97 LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGL 156
L W T + +S + + P +P + L +R A A +FQP+A ++N +
Sbjct: 67 LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 124
Query: 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
G L H D E D PIVS+SLG AIF GG R DP + L GD V+ GE+R
Sbjct: 125 GAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 184
Query: 217 CFHGV 221
+HG+
Sbjct: 185 FYHGI 189
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
GN=alkB PE=3 SV=1
Length = 220
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 90 ASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAA 149
A L L W + + + R+ P +P AL L L P P P++
Sbjct: 68 AMTALGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETP------PDSC 121
Query: 150 IVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVL 209
+VN + G +G H D EAD P++S+SLG A+F +GG +R+DP ++ L SGD
Sbjct: 122 LVNLYRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCR 181
Query: 210 MAGEARECFHGVPRIF 225
+ G AR FHGV RI
Sbjct: 182 LLGPARLAFHGVDRIL 197
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
OS=Caulobacter crescentus (strain NA1000 / CB15N)
GN=alkB PE=3 SV=2
Length = 220
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 90 ASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAA 149
A L L W + + + R+ P +P AL L L P P P++
Sbjct: 68 AMTALGSLGWTSDARGYRYVDRHPETGRPWPDMPPALLDLWTVLGDPETP------PDSC 121
Query: 150 IVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVL 209
+VN + G +G H D EAD P++S+SLG A+F +GG +R+DP ++ L SGD
Sbjct: 122 LVNLYRDGARMGLHQDRDEADPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCR 181
Query: 210 MAGEARECFHGVPRIF 225
+ G AR FHGV RI
Sbjct: 182 LLGPARLAFHGVDRIL 197
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=alkB PE=3 SV=2
Length = 216
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 97 LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGL 156
L W T + ++ R+ P +P + + R+ A A FQP+A ++N +
Sbjct: 67 LGWTTDRHGYCYAVRDPLTDKPWPALPLSFASVCRQAAIAAG--YASFQPDACLINRYAP 124
Query: 157 GDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
G L H D E D PIVS+SLG A+F GG R DP + L GD V+ GE+R
Sbjct: 125 GAKLSLHQDKDEPDLRAPIVSVSLGVPAVFQFGGLRRSDPIQRILLEHGDIVVWGGESRL 184
Query: 217 CFHGV 221
+HG+
Sbjct: 185 FYHGI 189
>sp|Q756L0|EAF1_ASHGO Chromatin modification-related protein EAF1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=EAF1 PE=3 SV=2
Length = 957
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 9 RESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKV--LLEEESSIGSLD--LGASSCTSN 64
R S++ + N G IDDL + + +KK+ ++EE+ + ++D L +S +
Sbjct: 393 RRSISHLQKSVNEVQEADTLGNIDDLLNKISDKKLAGMIEEQKKVIAVDAKLSSSKIAPS 452
Query: 65 EDAHRWKFYEEDIATLRGKTCKSV 88
E+ H +E+ + L + CK +
Sbjct: 453 EEIHAPHIWEDPLDELDEQGCKPI 476
>sp|A6ZQM4|RRF2M_YEAS7 Ribosome-releasing factor 2, mitochondrial OS=Saccharomyces
cerevisiae (strain YJM789) GN=MEF2 PE=3 SV=1
Length = 819
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 31 IDDLFSAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRG-------- 82
+ DL A K + + +E+ESS+ + GAS+C S+E+++R + + T+
Sbjct: 704 LQDLTGARKAQILSIEDESSVS--NSGASTCNSSENSNRIYIPSDAVTTIHATKDKKNTQ 761
Query: 83 ----KTCKSVKASVLLRKLRWCTLGLQ 105
K +KA V LR++ T L+
Sbjct: 762 ETSSNVKKIIKAKVPLREITTYTNKLR 788
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,319,798
Number of Sequences: 539616
Number of extensions: 4123784
Number of successful extensions: 9140
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9117
Number of HSP's gapped (non-prelim): 13
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)