Query 024582
Match_columns 265
No_of_seqs 217 out of 1037
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00568 alkb DNA alkylation 100.0 1.5E-42 3.2E-47 297.7 9.8 130 90-221 40-169 (169)
2 PRK15401 alpha-ketoglutarate-d 100.0 2E-40 4.2E-45 293.5 15.3 150 93-264 64-213 (213)
3 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.4E-34 3.1E-39 248.8 10.8 151 92-262 43-194 (194)
4 KOG2731 DNA alkylation damage 100.0 1.1E-34 2.4E-39 269.3 5.7 240 3-265 92-351 (378)
5 COG3145 AlkB Alkylated DNA rep 100.0 5.2E-29 1.1E-33 217.4 11.9 126 96-227 61-187 (194)
6 KOG4176 Uncharacterized conser 99.6 1.2E-15 2.5E-20 142.9 12.1 138 94-264 160-304 (323)
7 KOG3200 Uncharacterized conser 99.6 1.2E-15 2.7E-20 130.9 10.8 149 107-264 51-214 (224)
8 KOG3959 2-Oxoglutarate- and ir 97.6 2E-05 4.3E-10 71.2 1.6 134 100-263 108-276 (306)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.1 0.00032 7E-09 53.8 2.9 82 146-262 1-95 (98)
10 PF13640 2OG-FeII_Oxy_3: 2OG-F 97.0 0.001 2.2E-08 51.1 4.5 72 149-224 1-86 (100)
11 KOG2731 DNA alkylation damage 97.0 0.0003 6.5E-09 66.9 1.5 61 145-221 313-377 (378)
12 PF12933 FTO_NTD: FTO catalyti 96.1 0.0038 8.3E-08 56.7 2.7 79 142-221 134-236 (253)
13 smart00702 P4Hc Prolyl 4-hydro 93.8 0.85 1.8E-05 38.5 10.5 80 144-226 80-167 (178)
14 PF12851 Tet_JBP: Oxygenase do 90.9 2.7 5.9E-05 36.2 9.9 66 159-226 86-154 (171)
15 PF09859 Oxygenase-NA: Oxygena 85.6 3.6 7.8E-05 35.7 7.1 100 121-227 42-161 (173)
16 PRK05467 Fe(II)-dependent oxyg 84.4 2.3 5E-05 38.4 5.7 72 148-227 81-167 (226)
17 TIGR01762 chlorin-enz chlorina 76.9 30 0.00065 32.1 10.5 25 197-224 208-232 (288)
18 TIGR02466 conserved hypothetic 73.6 21 0.00046 31.6 8.2 78 143-225 92-186 (201)
19 COG2850 Uncharacterized conser 68.1 18 0.00039 35.2 6.9 89 122-223 99-202 (383)
20 PF08007 Cupin_4: Cupin superf 63.6 14 0.00031 34.6 5.3 60 147-212 112-190 (319)
21 PRK10572 DNA-binding transcrip 54.3 50 0.0011 29.7 7.1 69 141-217 15-86 (290)
22 PF13759 2OG-FeII_Oxy_5: Putat 52.4 15 0.00032 28.3 2.8 72 149-225 2-90 (101)
23 COG3128 PiuC Uncharacterized i 44.7 54 0.0012 29.3 5.4 70 150-224 85-167 (229)
24 COG3826 Uncharacterized protei 40.8 97 0.0021 27.7 6.3 82 144-227 122-223 (236)
25 PLN02904 oxidoreductase 31.3 1.7E+02 0.0037 28.0 7.0 58 148-214 209-272 (357)
26 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 28.1 28 0.00061 30.4 1.0 64 158-228 114-181 (195)
27 PF03079 ARD: ARD/ARD' family; 27.9 81 0.0018 26.9 3.7 42 176-219 95-136 (157)
28 COG3751 EGL-9 Predicted prolin 26.1 1.6E+02 0.0034 27.3 5.5 75 149-224 138-225 (252)
29 PF13661 2OG-FeII_Oxy_4: 2OG-F 25.3 65 0.0014 23.2 2.3 23 147-169 11-33 (70)
30 TIGR02408 ectoine_ThpD ectoine 21.3 4.2E+02 0.0091 24.1 7.4 24 199-225 212-235 (277)
31 COG5285 Protein involved in bi 21.1 2.6E+02 0.0057 26.5 6.0 65 153-221 125-213 (299)
32 PLN02393 leucoanthocyanidin di 20.8 2.4E+02 0.0051 27.0 5.9 57 148-214 214-278 (362)
33 PLN03001 oxidoreductase, 2OG-F 20.3 3.2E+02 0.0069 24.9 6.4 58 148-214 117-180 (262)
34 KOG2107 Uncharacterized conser 20.1 1.7E+02 0.0036 25.6 4.1 36 175-212 95-130 (179)
35 PF07883 Cupin_2: Cupin domain 20.0 81 0.0018 21.6 1.9 53 154-218 5-57 (71)
No 1
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=100.00 E-value=1.5e-42 Score=297.72 Aligned_cols=130 Identities=43% Similarity=0.680 Sum_probs=120.0
Q ss_pred hhhhhhceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCc
Q 024582 90 ASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA 169 (265)
Q Consensus 90 ~~~ll~klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~ 169 (265)
++.+++||||++.|++|+|+++.|....++++||++|.+|+++++..+ ++.++.||+||||||++||+||||+|++|.
T Consensus 40 pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~~~v~~~~--g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~ 117 (169)
T TIGR00568 40 AMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCERVATAA--GFPDFQPDACLVNRYAPGATLSLHQDRDEP 117 (169)
T ss_pred hhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHHHHHHHHh--CCCCCCCCEEEEEeecCCCccccccccccc
Confidence 366778999999999999999999766677789999999999998766 456789999999999999999999998888
Q ss_pred CCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCC
Q 024582 170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGV 221 (265)
Q Consensus 170 ~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgV 221 (265)
+++.||||||||++|+|+|+++++++.+.+|.|+|||||||+|++|++||||
T Consensus 118 ~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv 169 (169)
T TIGR00568 118 DLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV 169 (169)
T ss_pred cCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence 8889999999999999999998888889999999999999999999999998
No 2
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=2e-40 Score=293.51 Aligned_cols=150 Identities=33% Similarity=0.510 Sum_probs=128.9
Q ss_pred hhhceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcCCC
Q 024582 93 LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWS 172 (265)
Q Consensus 93 ll~klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~ 172 (265)
-+.++.|++-...|+|+........+|++||++|.+|+++++..+ ++.+|.||+||||||++|++||||+|+.|.+++
T Consensus 64 ~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~~~~~--~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~ 141 (213)
T PRK15401 64 NCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRAAAAA--GFPGFQPDACLINRYAPGAKLSLHQDKDERDFR 141 (213)
T ss_pred ccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHHHHHc--CCCCCCCCEEEEEeccCcCccccccCCCcccCC
Confidence 356789998666777776542233579999999999999998765 456789999999999999999999998787788
Q ss_pred CCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCccccCCchhhhhhhhcccCCCchhhhhhcc
Q 024582 173 KPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYI 252 (265)
Q Consensus 173 ~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVPki~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 252 (265)
.||||||||++|+|+||+.++++.+.+|.|+|||||||+|++|++||||||+++.+.+ .+
T Consensus 142 ~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p--------------------~~ 201 (213)
T PRK15401 142 APIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHP--------------------LT 201 (213)
T ss_pred CCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCC--------------------CC
Confidence 9999999999999999988777778999999999999999999999999999887543 13
Q ss_pred CCceeEEEeecc
Q 024582 253 RNSRININIRQV 264 (265)
Q Consensus 253 ~~~RINiTfRqV 264 (265)
...|||||||+|
T Consensus 202 g~~RINLTFR~~ 213 (213)
T PRK15401 202 GECRINLTFRKA 213 (213)
T ss_pred CCCeEEEEeEcC
Confidence 468999999986
No 3
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=100.00 E-value=1.4e-34 Score=248.81 Aligned_cols=151 Identities=32% Similarity=0.595 Sum_probs=115.4
Q ss_pred hhhhceeeeeecceeecCCC-cccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcC
Q 024582 92 VLLRKLRWCTLGLQFDWSKR-NYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEAD 170 (265)
Q Consensus 92 ~ll~klRW~tlG~~ydw~~~-~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~ 170 (265)
.+.++++|.+.|..|+|+.+ .+.. .++.++|++|.++++++..... ...++.||+||||+|.+|++|++|+|+++.+
T Consensus 43 ~~~~~~~~~~~~~~y~y~~~~~~~~-~~~~~~p~~l~~~~~~~~~~~~-~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~ 120 (194)
T PF13532_consen 43 KLCGGLSWVGDGPSYRYSGKRPVRS-KPWPPFPEWLSRLLERLVEATG-IPPGWRPNQCLINYYRDGSGIGPHSDDEEYG 120 (194)
T ss_dssp E-SSEEEEEECT--CCCTCC-EECC-CEBSCCHHHHHHHHHHHHHHHT--SHSS--SEEEEEEESSTT-EEEE---TTC-
T ss_pred ecceeeEEECCCCCeEcCCccccCC-CCCCCccHHHHHHHHHHHHHhc-cccCCCCCEEEEEecCCCCCcCCCCCccccc
Confidence 46689999999999999987 6654 4689999999999999987542 1346899999999999999999999999776
Q ss_pred CCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCccccCCchhhhhhhhcccCCCchhhhhh
Q 024582 171 WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLE 250 (265)
Q Consensus 171 ~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVPki~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (265)
++.||+|||||++|+|.|+++...+..+.+.|++|||+||+|++|+.|||||++..++.+. .
T Consensus 121 ~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~------------------~ 182 (194)
T PF13532_consen 121 FGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPS------------------H 182 (194)
T ss_dssp CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEES------------------T
T ss_pred CCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhheeEcccccCCcccc------------------c
Confidence 8899999999999999999887777899999999999999999998789999998764321 1
Q ss_pred ccCCceeEEEee
Q 024582 251 YIRNSRININIR 262 (265)
Q Consensus 251 y~~~~RINiTfR 262 (265)
++++.|||||||
T Consensus 183 ~~~~~RislTfR 194 (194)
T PF13532_consen 183 YVRGRRISLTFR 194 (194)
T ss_dssp EE-S-EEEEEEE
T ss_pred cCCCCEEEEEeC
Confidence 568999999999
No 4
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=269.35 Aligned_cols=240 Identities=35% Similarity=0.421 Sum_probs=176.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCccccCCcchhHHHHHhhhhhhhhccccCccCCCCCCCCCccccccceeeccch-hccc
Q 024582 3 EQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDI-ATLR 81 (265)
Q Consensus 3 ~Q~~wi~~~l~~~~~~Pn~tnl~~~~~~~~~lw~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~ 81 (265)
+|..||.+| |+.|+.+++..+++|+.+ +....-..++ ..+-....|....+.+ +.+.
T Consensus 92 g~~k~~lqs----~~~~~s~~~~v~qe~e~~--~~~a~~~c~l----------------~~~~sd~t~~~~~s~ss~~~~ 149 (378)
T KOG2731|consen 92 GDNKLILQS----PQLPRSGGHFVIQEPENK--KSGAPNYCLL----------------VNRMSDVTLQDLESVSSESDQ 149 (378)
T ss_pred ccccccccC----CCcCcccceeeeeccccc--cccCcccccc----------------cccccccccccccccchhhhc
Confidence 456666663 899999999999988642 1111100000 0111112233332222 3456
Q ss_pred CccccccchhhhhhceeeeeecceeecCCCccc--CCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCe-EEeeecCCCC
Q 024582 82 GKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYN--VSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEA-AIVNYFGLGD 158 (265)
Q Consensus 82 ~~~~~~~~~~~ll~klRW~tlG~~ydw~~~~y~--~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a-~ivN~Y~~gd 158 (265)
..+++++.++.+++||||+|+|++|||+++.|- ....+.-+|++|..+.+.-+..+. ++.++...+ +|+|||..++
T Consensus 150 ~~e~~sv~~~r~~~KlRw~T~G~~~dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~-~~~~~~~~~Gli~nYlsi~~ 228 (378)
T KOG2731|consen 150 NVELKSVRNHRLLPKLRWVTLGNQYDWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAK-GFSHIVIRPGLIKNYLSIDD 228 (378)
T ss_pred cccceeccchhhhhhhcccccccccCCccccccccccccCCCCChHHhhhhhhhhhhhc-CccceeccCcceeeecccCc
Confidence 678889999889999999999999999999932 223455666677666655544443 455555555 5999999999
Q ss_pred CCCcccCCCCcCCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCC--ccccCCchh-----
Q 024582 159 TLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVP--RIFTDRENA----- 231 (265)
Q Consensus 159 ~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVP--ki~~~~~~~----- 231 (265)
+|+.|.|..|++...|++|+|||+.|||++|...+++.+.+++|++||+++|+|.+|.++|||| +.+.+....
T Consensus 229 tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~Gfsrlv~haIp~s~sl~~~e~~~~~~~ 308 (378)
T KOG2731|consen 229 TLGIHLDCRELDLSKPFYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDGFSRLVEHAIPESRSLPARESNGTKAG 308 (378)
T ss_pred EEEEEeehhhcccCCccccccccccceeeecccccCCCCCccccccCceEeecchHHHHhhccchhceecccccCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 666665431
Q ss_pred -hhh-------h-hhcccCCCchhhhhhccCCceeEEEeeccC
Q 024582 232 -EIA-------S-LDLQFSHEDDHFFLEYIRNSRININIRQVF 265 (265)
Q Consensus 232 -~~~-------~-~~~~~~~~~~~~~~~y~~~~RINiTfRqV~ 265 (265)
+++ + ..+.++.+.++.+.+|+++.|+|||||||+
T Consensus 309 ~e~plp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~ 351 (378)
T KOG2731|consen 309 DEAPLPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVS 351 (378)
T ss_pred ccCCCcccccccccCCCcccccchhHHHHHHhhhcCceeEEec
Confidence 122 1 122355567889999999999999999984
No 5
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.2e-29 Score=217.41 Aligned_cols=126 Identities=32% Similarity=0.433 Sum_probs=107.2
Q ss_pred ceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcCCCCCe
Q 024582 96 KLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI 175 (265)
Q Consensus 96 klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~~PI 175 (265)
.+.|.+.=..|.|+.+.+....+++++|..+..+..+ + ++..+.|||||||+|++||+||||+|.+|.+...||
T Consensus 61 ~~~W~~d~~gy~y~~~~p~~~~p~p~l~~~~~~~~~~----~--g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v 134 (194)
T COG3145 61 LLGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFGA----A--GYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPV 134 (194)
T ss_pred ccceecccccccccccccCCCCCCCccHHHHHHHHHH----h--cCCCCChhheeEEeccCCCccccccccccccCCCce
Confidence 7889988444677777777766666677766666653 3 456789999999999999999999999988777789
Q ss_pred EEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccc-cCCCccccC
Q 024582 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF-HGVPRIFTD 227 (265)
Q Consensus 176 vSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~-HgVPki~~~ 227 (265)
||||||++|+|+|+++.+.+...++.|+|||||||+|++|+.| |.||++...
T Consensus 135 ~slSLg~~~~F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~ 187 (194)
T COG3145 135 ASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRL 187 (194)
T ss_pred EEEecCCCeEEEeccccCCCCceeEEecCCCEEEecCCccccccccccccccC
Confidence 9999999999999999887889999999999999999999988 699998765
No 6
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.2e-15 Score=142.85 Aligned_cols=138 Identities=26% Similarity=0.433 Sum_probs=107.8
Q ss_pred hhceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcCCCC
Q 024582 94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSK 173 (265)
Q Consensus 94 l~klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~~ 173 (265)
+++++..+||+-|+|.+..-+...+..|+|..+..+.+++..... .+. .||+|+||+|.+|++|.+|.|++. |..
T Consensus 160 gk~R~~iq~G~~f~y~~~~~d~~~~~~piPs~~~~ii~rlv~~~~--ip~-~pd~~~iN~Ye~G~~i~ph~~~~~--F~~ 234 (323)
T KOG4176|consen 160 GKHREVIQLGYPFDYRTNNVDESKPVDPIPSLFKSIIDRLVSWRV--IPE-RPDQCTINFYEPGDGIPPHIDHSA--FLD 234 (323)
T ss_pred ccceeeeecCceeccCCCcccccCccCCCchHHHHHHHHhhhhcc--CCC-CCCeeEEEeeCCCCCCCCCCChHH--hcC
Confidence 667777789999999999888755578999999999999987652 334 799999999999999999997765 689
Q ss_pred CeEEEecCCceEEEeecCCCCCC------CEEEEcCCCcEEEEcccc-cccccCCCccccCCchhhhhhhhcccCCCchh
Q 024582 174 PIVSMSLGCKAIFLLGGKSREDP------PLAMFLRSGDAVLMAGEA-RECFHGVPRIFTDRENAEIASLDLQFSHEDDH 246 (265)
Q Consensus 174 PIvSlSLG~~~iF~~~~~~~~~~------~~~i~L~sGdllvM~G~s-R~~~HgVPki~~~~~~~~~~~~~~~~~~~~~~ 246 (265)
||+|+||=++|+|.||+.-.... ...+.++-|+++||.|.+ -..-|.++.
T Consensus 235 Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~----------------------- 291 (323)
T KOG4176|consen 235 PISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRP----------------------- 291 (323)
T ss_pred ceEEEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCC-----------------------
Confidence 99999999999999998532211 345555666666666654 233344433
Q ss_pred hhhhccCCceeEEEeecc
Q 024582 247 FFLEYIRNSRININIRQV 264 (265)
Q Consensus 247 ~~~~y~~~~RINiTfRqV 264 (265)
.++.||+||||.+
T Consensus 292 -----~~~kRisitfrki 304 (323)
T KOG4176|consen 292 -----SRNKRISITFRKI 304 (323)
T ss_pred -----CCCceEEEEEEEe
Confidence 3789999999986
No 7
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.2e-15 Score=130.87 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=105.4
Q ss_pred ecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcCCCCCeE-EEecCCceE
Q 024582 107 DWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIV-SMSLGCKAI 185 (265)
Q Consensus 107 dw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~~PIv-SlSLG~~~i 185 (265)
||+.-.-...+....+|+||+.+..++.... .|.+ ..|.+|||.|.+|.+|++|.|...+ .||| .||||+.++
T Consensus 51 NyGGvvh~~glipeelP~wLq~~v~kinnlg--lF~s-~~NHVLVNeY~pgqGImPHtDGPaf---~piVstiSlGsh~v 124 (224)
T KOG3200|consen 51 NYGGVVHKTGLIPEELPPWLQYYVDKINNLG--LFKS-PANHVLVNEYLPGQGIMPHTDGPAF---HPIVSTISLGSHTV 124 (224)
T ss_pred hcCCccccCCcCccccCHHHHHHHHHhhccc--ccCC-CcceeEeecccCCCCcCcCCCCCcc---cceEEEEecCCceE
Confidence 3444333334445789999999999998654 3444 7899999999999999999999875 4655 789999999
Q ss_pred EEeecCCCC-------------CCCEEEEcCCCcEEEEcccccc-cccCCCccccCCchhhhhhhhcccCCCchhhhhhc
Q 024582 186 FLLGGKSRE-------------DPPLAMFLRSGDAVLMAGEARE-CFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEY 251 (265)
Q Consensus 186 F~~~~~~~~-------------~~~~~i~L~sGdllvM~G~sR~-~~HgVPki~~~~~~~~~~~~~~~~~~~~~~~~~~y 251 (265)
+.|...-+. ...+.+.|++.|+||+.+++-. ..|||...-.+....-+.+.. .++ ..+.....
T Consensus 125 ldf~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~-ac~--s~k~Gd~l 201 (224)
T KOG3200|consen 125 LDFYDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNAL-ACS--SRKDGDKL 201 (224)
T ss_pred EecccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhh-hcc--ccCCccee
Confidence 999762111 1246899999999999999955 559998765443222221110 011 11223455
Q ss_pred cCCceeEEEeecc
Q 024582 252 IRNSRININIRQV 264 (265)
Q Consensus 252 ~~~~RINiTfRqV 264 (265)
.++.||+||+|.|
T Consensus 202 vr~tRvSLTiR~V 214 (224)
T KOG3200|consen 202 VRQTRVSLTIRLV 214 (224)
T ss_pred eecceeEEEEecc
Confidence 6799999999987
No 8
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=97.64 E-value=2e-05 Score=71.23 Aligned_cols=134 Identities=24% Similarity=0.377 Sum_probs=91.8
Q ss_pred eeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCC-CCeEEeeecCCC-CCCCcccCCCCcCCCCCeEE
Q 024582 100 CTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQ-PEAAIVNYFGLG-DTLGGHLDDMEADWSKPIVS 177 (265)
Q Consensus 100 ~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~-p~a~ivN~Y~~g-d~lg~H~D~~e~~~~~PIvS 177 (265)
..+|-.-|+..++...+ .+..||+.-..+.+++... |.-.+|+ +++|=+-|=+.. +.|-+|+||.=. ++.-+|+
T Consensus 108 QdyGPKvNFkk~Klkt~-~F~G~P~~~~~v~rrm~~y--p~l~gfqp~EqCnLeYep~kgsaIdpH~DD~Wi-WGeRlv~ 183 (306)
T KOG3959|consen 108 QDYGPKVNFKKKKLKTD-TFVGMPEYADMVLRRMSEY--PVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWI-WGERLVR 183 (306)
T ss_pred cccCCccchhhhhhccC-cccCCchHHHHHHHHhhcc--chhhccCcHHHcCcccccccCCccCccccchhh-hhhheee
Confidence 35888888888877544 4778999988888888642 2334453 478888777765 999999999743 3334444
Q ss_pred Ee--------cC-----CceEEEeecCC-------------------CCCCCEEEEcCCCcEEEEcccccccc-cCCCcc
Q 024582 178 MS--------LG-----CKAIFLLGGKS-------------------REDPPLAMFLRSGDAVLMAGEARECF-HGVPRI 224 (265)
Q Consensus 178 lS--------LG-----~~~iF~~~~~~-------------------~~~~~~~i~L~sGdllvM~G~sR~~~-HgVPki 224 (265)
+- |- ++.++.+...- ..+....|.+++.|+|||.|++|+-| |||=+.
T Consensus 184 ~n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~ 263 (306)
T KOG3959|consen 184 SNRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRH 263 (306)
T ss_pred hhhccHHHHHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHH
Confidence 32 11 22344433210 11235689999999999999999977 999653
Q ss_pred ccCCchhhhhhhhcccCCCchhhhhhccCCceeEEEeec
Q 024582 225 FTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQ 263 (265)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~RINiTfRq 263 (265)
. +++.||-+|+|.
T Consensus 264 h--------------------------i~~RRvcvt~RE 276 (306)
T KOG3959|consen 264 H--------------------------IRGRRVCVTMRE 276 (306)
T ss_pred h--------------------------hhhceeeeeHHh
Confidence 2 478899998885
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.15 E-value=0.00032 Score=53.79 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCeEEeeecC---CCCCCCcccCCCCcCCCCCeEEEecC-CceEEEeecCCCCCCCEEEEcCCCcEEEEccc--------
Q 024582 146 PEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLG-CKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE-------- 213 (265)
Q Consensus 146 p~a~ivN~Y~---~gd~lg~H~D~~e~~~~~PIvSlSLG-~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~-------- 213 (265)
++.+.+|+|+ .+.++++|.|.+ ..+++|-+- ...-+.|.... .-+.+...++.++|+-|.
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~-----~~~~Til~~~~~~gL~~~~~~---~~~~v~~~~~~~~v~~G~~l~~~t~g 72 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE-----DGLLTILFQDEVGGLQVRDDG---EWVDVPPPPGGFIVNFGDALEILTNG 72 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-------SSEEEEEETSTS-EEEEETT---EEEE----TTCEEEEEBHHHHHHTTT
T ss_pred CCEEEEEECCCcccCCceeCCCcCC-----CCeEEEEecccchheeccccc---cccCccCccceeeeeceeeeecccCC
Confidence 4789999999 779999999985 235555554 55555555432 233444445555555555
Q ss_pred c-cccccCCCccccCCchhhhhhhhcccCCCchhhhhhccCCceeEEEee
Q 024582 214 A-RECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIR 262 (265)
Q Consensus 214 s-R~~~HgVPki~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~RINiTfR 262 (265)
. +.+.|+|-... ...|++++|+
T Consensus 73 ~~~~~~HrV~~~~---------------------------~~~R~s~~~f 95 (98)
T PF03171_consen 73 RYPATLHRVVPPT---------------------------EGERYSLTFF 95 (98)
T ss_dssp SS----EEEE--S---------------------------TS-EEEEEEE
T ss_pred ccCCceeeeEcCC---------------------------CCCEEEEEEE
Confidence 4 34568876543 3789999986
No 10
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=97.02 E-value=0.001 Score=51.13 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=46.2
Q ss_pred EEeeecCCCCCCCcccCCCCcCCCCCeEEE--ecC-C-----ceEEEeecCC-CCCCCEEEE-----cCCCcEEEEcccc
Q 024582 149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSM--SLG-C-----KAIFLLGGKS-REDPPLAMF-----LRSGDAVLMAGEA 214 (265)
Q Consensus 149 ~ivN~Y~~gd~lg~H~D~~e~~~~~PIvSl--SLG-~-----~~iF~~~~~~-~~~~~~~i~-----L~sGdllvM~G~s 214 (265)
|=+|.|.+|+.+++|.|.... ..-++++ -|. . ...+.|.... .+.....+. .+.|+++++.+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~--~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~-- 76 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYD--PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS-- 76 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCC--CSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES--
T ss_pred CEEEEECcCCEEeeeECCCCC--CcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC--
Confidence 347999999999999999531 1223332 244 1 1345554332 233444555 99999999999
Q ss_pred cccccCCCcc
Q 024582 215 RECFHGVPRI 224 (265)
Q Consensus 215 R~~~HgVPki 224 (265)
...+|+|.++
T Consensus 77 ~~~~H~v~~v 86 (100)
T PF13640_consen 77 DNSLHGVTPV 86 (100)
T ss_dssp CTCEEEEEEE
T ss_pred CCCeecCccc
Confidence 8889999998
No 11
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=96.99 E-value=0.0003 Score=66.86 Aligned_cols=61 Identities=38% Similarity=0.602 Sum_probs=51.8
Q ss_pred CCCeEEeeecCCCCCCCcccCCCCcC----CCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccC
Q 024582 145 QPEAAIVNYFGLGDTLGGHLDDMEAD----WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220 (265)
Q Consensus 145 ~p~a~ivN~Y~~gd~lg~H~D~~e~~----~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~Hg 220 (265)
-|+.||+|||..--.|+-|.|..|+. -+-||++||.|. +-|++|.... +.. |.+|..+||
T Consensus 313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~d-~~~--------------~~sr~~f~~ 376 (378)
T KOG2731|consen 313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQRD-EDK--------------GRSRMVFHG 376 (378)
T ss_pred CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchhh-hhh--------------hhheecccC
Confidence 78999999999999999999997753 245899999999 9999998643 333 888999999
Q ss_pred C
Q 024582 221 V 221 (265)
Q Consensus 221 V 221 (265)
|
T Consensus 377 ~ 377 (378)
T KOG2731|consen 377 V 377 (378)
T ss_pred C
Confidence 7
No 12
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=96.11 E-value=0.0038 Score=56.74 Aligned_cols=79 Identities=28% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCCCCeEEeeecCC----------------C-CCCCcccCCCCcCCCCCeE--EEecC--CceEEEeecCC--CCCCCE
Q 024582 142 EEFQPEAAIVNYFGL----------------G-DTLGGHLDDMEADWSKPIV--SMSLG--CKAIFLLGGKS--REDPPL 198 (265)
Q Consensus 142 ~~~~p~a~ivN~Y~~----------------g-d~lg~H~D~~e~~~~~PIv--SlSLG--~~~iF~~~~~~--~~~~~~ 198 (265)
....+|..||||+.+ | -.+|||.|..-.+ ..+|+ |.|-. .+....++=+. ...+.+
T Consensus 134 ~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~-~StVAVY~~s~~~~~~~~W~VgLka~D~~tP~L 212 (253)
T PF12933_consen 134 GSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVE-RSTVAVYSYSCEEPEPADWHVGLKAWDIETPGL 212 (253)
T ss_dssp ------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-T-T--EEEEEEE-----TTSEEEEEETT--SS-EE
T ss_pred cceeeehhhhhccCcccccccccccccccCCcceeeeecccccccc-ccceEEEEecCCCCCCCceEEEEeecCCCCCee
Confidence 345789999999998 2 3689999986443 34666 55552 34566655432 224578
Q ss_pred EEEcCCCcEEEEcccc-cccccCC
Q 024582 199 AMFLRSGDAVLMAGEA-RECFHGV 221 (265)
Q Consensus 199 ~i~L~sGdllvM~G~s-R~~~HgV 221 (265)
.+.|++||.+.|-+.- ....|+|
T Consensus 213 ~vPL~sgd~Y~Mldd~N~tHqH~V 236 (253)
T PF12933_consen 213 AVPLRSGDCYYMLDDFNATHQHCV 236 (253)
T ss_dssp EEEE-TT-EEEE-TTHHHHEEEEE
T ss_pred EEeccCCCeEEEccccchhhHHHH
Confidence 9999999999999998 7778887
No 13
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=93.82 E-value=0.85 Score=38.53 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=50.0
Q ss_pred CCCCeEEeeecCCCCCCCcccCCCCcCC-CCCeEEEec-------CCceEEEeecCCCCCCCEEEEcCCCcEEEEccccc
Q 024582 144 FQPEAAIVNYFGLGDTLGGHLDDMEADW-SKPIVSMSL-------GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAR 215 (265)
Q Consensus 144 ~~p~a~ivN~Y~~gd~lg~H~D~~e~~~-~~PIvSlSL-------G~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR 215 (265)
...+.+-|..|.+|+...+|.|...... ..-++++-+ |..-.|. .. .......+....|++|++...-.
T Consensus 80 ~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~--~~-~~~~~~~v~P~~G~~v~f~~~~~ 156 (178)
T smart00702 80 LSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFP--GL-GLMVCATVKPKKGDLLFFPSGRG 156 (178)
T ss_pred ccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEec--CC-CCccceEEeCCCCcEEEEeCCCC
Confidence 4567888999999999999999874321 112333221 1111111 11 11235588999999999875544
Q ss_pred ccccCCCcccc
Q 024582 216 ECFHGVPRIFT 226 (265)
Q Consensus 216 ~~~HgVPki~~ 226 (265)
..+|+|-.+..
T Consensus 157 ~~~H~v~pv~~ 167 (178)
T smart00702 157 RSLHGVCPVTR 167 (178)
T ss_pred CccccCCccee
Confidence 67799987753
No 14
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=90.92 E-value=2.7 Score=36.17 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCCcccCCCCcCCC-CCeEEEecC--CceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCcccc
Q 024582 159 TLGGHLDDMEADWS-KPIVSMSLG--CKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFT 226 (265)
Q Consensus 159 ~lg~H~D~~e~~~~-~PIvSlSLG--~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVPki~~ 226 (265)
....|.|......+ ..++.+-.| ....|.+-..+..-.-+++.+.+||||++-| +...|||..+..
T Consensus 86 ~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--~~~~Hgvtpv~~ 154 (171)
T PF12851_consen 86 CTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--KRELHGVTPVES 154 (171)
T ss_pred CccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--cceeeecCcccC
Confidence 67889998654222 234444444 3455555442222346789999999999876 566799999875
No 15
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=85.60 E-value=3.6 Score=35.70 Aligned_cols=100 Identities=25% Similarity=0.386 Sum_probs=59.4
Q ss_pred CchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCC-CcCCCCCeEEEecCCce------EEEeec--C
Q 024582 121 KIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDM-EADWSKPIVSMSLGCKA------IFLLGG--K 191 (265)
Q Consensus 121 ~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~-e~~~~~PIvSlSLG~~~------iF~~~~--~ 191 (265)
.+|+.+.++.++..+.. ..+| ..|+..|..||....|.|.- |.-|.--+ -+=|-.+. .|.+-. .
T Consensus 42 ~yP~~~~~fl~~ch~aG-----Q~rp-tplllrY~~gdyn~LHqdlyGe~vFPlQv-v~lLs~Pg~DftGGEFVltEQrP 114 (173)
T PF09859_consen 42 RYPATLAEFLARCHAAG-----QTRP-TPLLLRYGPGDYNCLHQDLYGEHVFPLQV-VILLSEPGEDFTGGEFVLTEQRP 114 (173)
T ss_pred CCCccHHHHHHHHHhcc-----CCCC-chhhheeCCCCccccccCCCCCcccCeEE-EEEcCCCCCcccCceEEEEEecC
Confidence 46666666666654432 1233 45678899999999999975 33232112 22232222 344432 1
Q ss_pred CCCCCCEEEEcCCCcEEEEcccc----------cccc-cCCCccccC
Q 024582 192 SREDPPLAMFLRSGDAVLMAGEA----------RECF-HGVPRIFTD 227 (265)
Q Consensus 192 ~~~~~~~~i~L~sGdllvM~G~s----------R~~~-HgVPki~~~ 227 (265)
.....+..+.|+-||.+|+.-.- |-.. |||-++...
T Consensus 115 R~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG 161 (173)
T PF09859_consen 115 RMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSG 161 (173)
T ss_pred CccCccccCCcCCCCEEEEecCCCCcCCCccceeccccccccccccc
Confidence 22345778999999999997632 3323 888887643
No 16
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=84.44 E-value=2.3 Score=38.43 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=45.8
Q ss_pred eEEeeecCCCCCCCcccCCCCcCC---C---CCeEEEe--c-------CCceEEEeecCCCCCCCEEEEcCCCcEEEEcc
Q 024582 148 AAIVNYFGLGDTLGGHLDDMEADW---S---KPIVSMS--L-------GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212 (265)
Q Consensus 148 a~ivN~Y~~gd~lg~H~D~~e~~~---~---~PIvSlS--L-------G~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G 212 (265)
-..+|.|..|..-++|+|..-... . .-.+|+. | |..-+|.- ......+.++.||+||+..
T Consensus 81 ~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~-----~~g~~~Vkp~aG~~vlfps 155 (226)
T PRK05467 81 PPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIED-----TYGEHRVKLPAGDLVLYPS 155 (226)
T ss_pred cceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEec-----CCCcEEEecCCCeEEEECC
Confidence 457899999999999999974310 0 1122222 2 22222211 1124678999999999986
Q ss_pred cccccccCCCccccC
Q 024582 213 EARECFHGVPRIFTD 227 (265)
Q Consensus 213 ~sR~~~HgVPki~~~ 227 (265)
. .+|.|-.|..+
T Consensus 156 ~---~lH~v~pVt~G 167 (226)
T PRK05467 156 T---SLHRVTPVTRG 167 (226)
T ss_pred C---CceeeeeccCc
Confidence 4 66999887654
No 17
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=76.91 E-value=30 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=18.0
Q ss_pred CEEEEcCCCcEEEEcccccccccCCCcc
Q 024582 197 PLAMFLRSGDAVLMAGEARECFHGVPRI 224 (265)
Q Consensus 197 ~~~i~L~sGdllvM~G~sR~~~HgVPki 224 (265)
.+.+.++.||+++|++- .+||--..
T Consensus 208 ~v~~~lkaGd~~~f~~~---t~HgS~~N 232 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWST---LMHASYPN 232 (288)
T ss_pred eeeeeeCCceEEEECCC---ceecCCCC
Confidence 45788999999999883 35665443
No 18
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=73.59 E-value=21 Score=31.62 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCCCeEEeeecCCCCCCCcccCCCCcCCCCCeE---------EEecCCceEE-Eee-----cCCC--CCCCEEEEcCCC
Q 024582 143 EFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIV---------SMSLGCKAIF-LLG-----GKSR--EDPPLAMFLRSG 205 (265)
Q Consensus 143 ~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~~PIv---------SlSLG~~~iF-~~~-----~~~~--~~~~~~i~L~sG 205 (265)
.++...+-+|.+..|+..+.|.-.... . ..++ .+.|+.++.= .+. ...+ ...-+.+..+.|
T Consensus 92 ~l~i~~~W~ni~~~Gg~h~~H~Hp~~~-l-SgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G 169 (201)
T TIGR02466 92 ELRIQKAWVNILPQGGTHSPHLHPGSV-I-SGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEG 169 (201)
T ss_pred ceEEeeEeEEEcCCCCccCceECCCce-E-EEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCC
Confidence 345567999999999999999875421 1 1122 2222222210 000 0000 011335677999
Q ss_pred cEEEEcccccccccCCCccc
Q 024582 206 DAVLMAGEARECFHGVPRIF 225 (265)
Q Consensus 206 dllvM~G~sR~~~HgVPki~ 225 (265)
+|||+-. +.+|+|+.-.
T Consensus 170 ~lvlFPS---~L~H~v~p~~ 186 (201)
T TIGR02466 170 RVLLFES---WLRHEVPPNE 186 (201)
T ss_pred eEEEECC---CCceecCCCC
Confidence 9999976 3458887754
No 19
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=68.14 E-value=18 Score=35.20 Aligned_cols=89 Identities=15% Similarity=0.274 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcCCCCCeEEEecCCceEEEeecCCC--------
Q 024582 122 IPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR-------- 193 (265)
Q Consensus 122 ~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~-------- 193 (265)
|-+.+..|.+.+-. .+.++-|-++|-|=.+|.++|.|.|.-. ++-|=.=..|...++....
T Consensus 99 w~p~v~~l~~~Frf-----lP~wr~ddiMIS~a~~GGgvg~H~D~YD------VfliQg~G~RRW~v~~~~~~~~~~~~~ 167 (383)
T COG2850 99 WHPEVAALMEPFRF-----LPDWRIDDIMISFAAPGGGVGPHFDQYD------VFLIQGQGRRRWRVGKKCNMSTLCPHP 167 (383)
T ss_pred cCHHHHHHHHHhcc-----CccccccceEEEEecCCCccCccccchh------eeEEeecccceeecCCcccccCcCCCc
Confidence 44456666665531 2467888899998889999999999642 4444444466777765421
Q ss_pred -------CCCCEEEEcCCCcEEEEcccccccccCCCc
Q 024582 194 -------EDPPLAMFLRSGDAVLMAGEARECFHGVPR 223 (265)
Q Consensus 194 -------~~~~~~i~L~sGdllvM~G~sR~~~HgVPk 223 (265)
........|++||+|.. +.|++-|||+-
T Consensus 168 d~~~~~~f~~~~d~vlepGDiLYi--Pp~~~H~gvae 202 (383)
T COG2850 168 DLLILAPFEPDIDEVLEPGDILYI--PPGFPHYGVAE 202 (383)
T ss_pred chhhcCCCCchhhhhcCCCceeec--CCCCCcCCccc
Confidence 12245678999999887 56777789887
No 20
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=63.58 E-value=14 Score=34.63 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=37.3
Q ss_pred CeEEeeecCCC---CCCCcccCCCCcCCCCCeEEEecCCceEEEeecCCC----------------CCCCEEEEcCCCcE
Q 024582 147 EAAIVNYFGLG---DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR----------------EDPPLAMFLRSGDA 207 (265)
Q Consensus 147 ~a~ivN~Y~~g---d~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~----------------~~~~~~i~L~sGdl 207 (265)
-.|-+|.|-.. .++++|.|+.+ ++.|=+-....+.+..... ......+.|++||+
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~d------vfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~ 185 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHD------VFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDV 185 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSE------EEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-E
T ss_pred cccceEEEecCCCCCCccCEECCcc------cEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCE
Confidence 56778999643 49999999854 5667677777777765210 12356899999999
Q ss_pred EEEcc
Q 024582 208 VLMAG 212 (265)
Q Consensus 208 lvM~G 212 (265)
|.|=-
T Consensus 186 LYlPr 190 (319)
T PF08007_consen 186 LYLPR 190 (319)
T ss_dssp EEE-T
T ss_pred EEECC
Confidence 99853
No 21
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=54.29 E-value=50 Score=29.72 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=46.1
Q ss_pred CCCCCCCeEEeeecC---CCCCCCcccCCCCcCCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEccccccc
Q 024582 141 GEEFQPEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAREC 217 (265)
Q Consensus 141 ~~~~~p~a~ivN~Y~---~gd~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~ 217 (265)
.++|.+|+.+|.--. +|..+..|.|+... ...-++.+-+.....|.+++. .+.++.||++++....-+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~-~~~~~i~~~~~G~~~~~~~~~-------~~~~~~g~~i~i~p~~~h~ 86 (290)
T PRK10572 15 LPGYSFNAHLVAGLTPIEAGGYLDFFIDRPLG-MKGYILNLTIRGQGVIFNGGR-------AFVCRPGDLLLFPPGEIHH 86 (290)
T ss_pred CCCCCcceeeeecccccccCCccceeeecCCC-ccceEEEEEEeccEEEecCCe-------eEecCCCCEEEECCCCcee
Confidence 457888877664432 35677778887653 444577777777777776553 3678888888887765433
No 22
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=52.43 E-value=15 Score=28.30 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=29.9
Q ss_pred EEeeecCCCCCCCcccCCCCcCCCCCeEEEecCCce-EEEee-c---------------CCCCCCCEEEEcCCCcEEEEc
Q 024582 149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKA-IFLLG-G---------------KSREDPPLAMFLRSGDAVLMA 211 (265)
Q Consensus 149 ~ivN~Y~~gd~lg~H~D~~e~~~~~PIvSlSLG~~~-iF~~~-~---------------~~~~~~~~~i~L~sGdllvM~ 211 (265)
+-+|.|+.|+....|.-.... . ..+.=|.++... .+.|. + .........+..+.|||||+-
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~-~-SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFP 79 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSW-L-SGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFP 79 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-S-E-EEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEE
T ss_pred eeEEEeCCCCccCceECCCcC-E-EEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeC
Confidence 456888888888888764321 1 123333332221 11111 1 011233567889999999998
Q ss_pred ccccccccCCCccc
Q 024582 212 GEARECFHGVPRIF 225 (265)
Q Consensus 212 G~sR~~~HgVPki~ 225 (265)
+ +.+|+|+.-.
T Consensus 80 s---~l~H~v~p~~ 90 (101)
T PF13759_consen 80 S---WLWHGVPPNN 90 (101)
T ss_dssp T---TSEEEE----
T ss_pred C---CCEEeccCcC
Confidence 6 3458887654
No 23
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=44.68 E-value=54 Score=29.35 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=42.9
Q ss_pred EeeecCCCCCCCcccCCCCcC---CCCCeEEEecCCceEEEeecC-CCCC---------CCEEEEcCCCcEEEEcccccc
Q 024582 150 IVNYFGLGDTLGGHLDDMEAD---WSKPIVSMSLGCKAIFLLGGK-SRED---------PPLAMFLRSGDAVLMAGEARE 216 (265)
Q Consensus 150 ivN~Y~~gd~lg~H~D~~e~~---~~~PIvSlSLG~~~iF~~~~~-~~~~---------~~~~i~L~sGdllvM~G~sR~ 216 (265)
+-|.|+.|+..++|+|..-.. ...+ +++---+|...+... +-++ ....+-|+-||+|+.-+++=
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr~~hp~~~~--~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypStSl- 161 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVRSIHPGSGF--RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPSTSL- 161 (229)
T ss_pred hhhhccCCCcccccccCcccccCCCCCc--eeEeeeeeeeecCCccccCCceEEEeccccceEEeccCCCEEEcccccc-
Confidence 459999999999999986432 1122 444333444433322 1111 14578889999999988764
Q ss_pred cccCCCcc
Q 024582 217 CFHGVPRI 224 (265)
Q Consensus 217 ~~HgVPki 224 (265)
|.|..+
T Consensus 162 --H~VtPV 167 (229)
T COG3128 162 --HEVTPV 167 (229)
T ss_pred --eecccc
Confidence 444444
No 24
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.83 E-value=97 Score=27.68 Aligned_cols=82 Identities=28% Similarity=0.345 Sum_probs=48.2
Q ss_pred CCCCeEEeeecCCCCCCCcccCCC-CcCCCCCeEEEecCCce------EEEeecC--CCCCCCEEEEcCCCcEEEEcc--
Q 024582 144 FQPEAAIVNYFGLGDTLGGHLDDM-EADWSKPIVSMSLGCKA------IFLLGGK--SREDPPLAMFLRSGDAVLMAG-- 212 (265)
Q Consensus 144 ~~p~a~ivN~Y~~gd~lg~H~D~~-e~~~~~PIvSlSLG~~~------iF~~~~~--~~~~~~~~i~L~sGdllvM~G-- 212 (265)
.+|.. |+=-|.+||.--.|.|-- |.-|.- -|.|-|-.+. .|.+-.. .-...+..+.|+-||-+|+.-
T Consensus 122 ~RpTp-LlLqYgpgD~NcLHQDLYGelvFPL-QvailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFavr~ 199 (236)
T COG3826 122 VRPTP-LLLQYGPGDYNCLHQDLYGELVFPL-QVAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFAVRD 199 (236)
T ss_pred ccCCc-eeEEecCCccchhhhhhhhceeeee-eEEEeccCCCCcccCceEEEEecccccccCCceeeccCCceEEEEeec
Confidence 35554 455689999999999974 433322 2233333322 3444321 122457889999999999964
Q ss_pred --------cccccc-cCCCccccC
Q 024582 213 --------EARECF-HGVPRIFTD 227 (265)
Q Consensus 213 --------~sR~~~-HgVPki~~~ 227 (265)
..|.-. |||.++-+.
T Consensus 200 RPv~gtrG~~r~~lRHGvS~lRSG 223 (236)
T COG3826 200 RPVQGTRGWYRVPLRHGVSRLRSG 223 (236)
T ss_pred CcccCccCccccchhcchhhhhcc
Confidence 223222 777776543
No 25
>PLN02904 oxidoreductase
Probab=31.35 E-value=1.7e+02 Score=27.98 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=36.4
Q ss_pred eEEeeecCCC------CCCCcccCCCCcCCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccc
Q 024582 148 AAIVNYFGLG------DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEA 214 (265)
Q Consensus 148 a~ivN~Y~~g------d~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~s 214 (265)
..-+|+|++- -+++.|.|-.-. .|+-= .. .=.++.. +++.-+.+...+|.+||.-|+.
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g~l----TlL~q--d~-~GLQV~~--~~g~Wi~V~p~pgalVVNiGD~ 272 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFGSL----TILLQ--SS-QGLQIMD--CNKNWVCVPYIEGALIVQLGDQ 272 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCCce----EEEec--CC-CeeeEEe--CCCCEEECCCCCCeEEEEccHH
Confidence 5678999873 468899997532 11110 11 1234433 2345778888889999998875
No 26
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=28.14 E-value=28 Score=30.44 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCCcccCCCCcCCCCCeEEEecCC----ceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCccccCC
Q 024582 158 DTLGGHLDDMEADWSKPIVSMSLGC----KAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDR 228 (265)
Q Consensus 158 d~lg~H~D~~e~~~~~PIvSlSLG~----~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVPki~~~~ 228 (265)
.--|.|+|.... |+.+-++. .....+....+........+++||.+|+.. +..||+|..|.+..
T Consensus 114 tPEGiH~DG~d~-----v~~~li~r~Ni~GG~s~i~~~~~~~~~~~~l~~p~d~l~~~D--~~~~H~vtpI~~~~ 181 (195)
T PF10014_consen 114 TPEGIHRDGVDF-----VFIHLINRHNIEGGESQIYDNDKEILFFFTLLEPGDTLLVDD--RRVWHYVTPIRPVD 181 (195)
T ss_dssp STTSSB--SSSE-----EEEEEEEEESEEE--EEEEETTSSEEEEE---STTEEEEEET--TTEEEEE--EEES-
T ss_pred CCCCccCCCCCE-----EEEEEEcCCCccCceEEEEeCCCCcceEEEecCCCCEEEEeC--CcceECCCceecCC
Confidence 457899998764 22222221 111222222221223456679999999987 77899999998763
No 27
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=27.94 E-value=81 Score=26.88 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=29.6
Q ss_pred EEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEccccccccc
Q 024582 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFH 219 (265)
Q Consensus 176 vSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~H 219 (265)
|.+=+..++.|-++.. ++.-+.|.++.||+|++-...++|+.
T Consensus 95 vR~i~~G~g~Fdvr~~--~~~wiri~~e~GDli~vP~g~~HrF~ 136 (157)
T PF03079_consen 95 VRYIVDGSGYFDVRDG--DDVWIRILCEKGDLIVVPAGTYHRFT 136 (157)
T ss_dssp EEEEEECEEEEEEE-T--TCEEEEEEEETTCEEEE-TT--EEEE
T ss_pred EEEEeCcEEEEEEEcC--CCEEEEEEEcCCCEEecCCCCceeEE
Confidence 4455677999999853 34456799999999999888877773
No 28
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=1.6e+02 Score=27.28 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=47.7
Q ss_pred EEeeecCCCCCCCcccCCCCcCCCCCeEEEecCCceEE---------EeecCC----CCCCCEEEEcCCCcEEEEccccc
Q 024582 149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIF---------LLGGKS----REDPPLAMFLRSGDAVLMAGEAR 215 (265)
Q Consensus 149 ~ivN~Y~~gd~lg~H~D~~e~~~~~PIvSlSLG~~~iF---------~~~~~~----~~~~~~~i~L~sGdllvM~G~sR 215 (265)
+=+|.|.+|+.+..|-|..-. .+.-.+..=++..+-. +|.... ..+....|.-.-+++++|--..+
T Consensus 138 ~~~~~y~~G~~l~~H~D~~~~-~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P~fn~lv~F~s~~~ 216 (252)
T COG3751 138 GQITVYNPGCFLLKHDDNGRD-KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTAADSFKTIAPVFNSLVFFKSRPS 216 (252)
T ss_pred eeeeEecCCceeEeecccCCC-ccceEEEEEeccCCCCCcCCCCceeecccccccccccccccccCCCCceEEEEEecCC
Confidence 567999999999999998632 2223444444433321 111111 11233456667789999988888
Q ss_pred ccccCCCcc
Q 024582 216 ECFHGVPRI 224 (265)
Q Consensus 216 ~~~HgVPki 224 (265)
+.+|.|-++
T Consensus 217 Hs~h~V~~~ 225 (252)
T COG3751 217 HSVHSVEEP 225 (252)
T ss_pred ccceecccc
Confidence 899999775
No 29
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=25.26 E-value=65 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.2
Q ss_pred CeEEeeecCCCCCCCcccCCCCc
Q 024582 147 EAAIVNYFGLGDTLGGHLDDMEA 169 (265)
Q Consensus 147 ~a~ivN~Y~~gd~lg~H~D~~e~ 169 (265)
...-..-|..|+.+++|+|....
T Consensus 11 ~~~~~~~~~~g~~~~~H~D~~~~ 33 (70)
T PF13661_consen 11 PNFRFYRYRRGDFFGWHVDADPS 33 (70)
T ss_pred cceeEEEcCCCCEeeeeEcCCcc
Confidence 34556779999999999998754
No 30
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=21.26 E-value=4.2e+02 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.0
Q ss_pred EEEcCCCcEEEEcccccccccCCCccc
Q 024582 199 AMFLRSGDAVLMAGEARECFHGVPRIF 225 (265)
Q Consensus 199 ~i~L~sGdllvM~G~sR~~~HgVPki~ 225 (265)
.+.++.||+|+|++- .+||--...
T Consensus 212 ~~~~~aGDvl~f~~~---~~H~S~~N~ 235 (277)
T TIGR02408 212 TFTGKAGSAVWFDCN---TMHGSGSNI 235 (277)
T ss_pred eeccCCceEEEEccc---cccCCCCCC
Confidence 467899999999873 356654443
No 31
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.06 E-value=2.6e+02 Score=26.51 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=37.7
Q ss_pred ecCCC-CCCCcccCCCCcCCCCCeEEEecC---------CceEEEeec-CC------CC-------CCCEEEEcCCCcEE
Q 024582 153 YFGLG-DTLGGHLDDMEADWSKPIVSMSLG---------CKAIFLLGG-KS------RE-------DPPLAMFLRSGDAV 208 (265)
Q Consensus 153 ~Y~~g-d~lg~H~D~~e~~~~~PIvSlSLG---------~~~iF~~~~-~~------~~-------~~~~~i~L~sGdll 208 (265)
+=.+| -.-.||.|-+ +....+...||++ ..+.+.+-+ .+ +. .....+.|+.||+|
T Consensus 125 ~~~p~~~~t~~HqD~~-~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDal 203 (299)
T COG5285 125 FQKPGAVATRWHQDYP-LVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDAL 203 (299)
T ss_pred CCCCcccccccccccc-cccCCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEE
Confidence 33344 6688999954 3344556666654 122333321 11 11 12578999999999
Q ss_pred EEcccccccccCC
Q 024582 209 LMAGEARECFHGV 221 (265)
Q Consensus 209 vM~G~sR~~~HgV 221 (265)
++.|. .|||-
T Consensus 204 lF~~~---L~HaA 213 (299)
T COG5285 204 LFNGS---LWHAA 213 (299)
T ss_pred EEcch---hhhhh
Confidence 99984 35554
No 32
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=20.84 E-value=2.4e+02 Score=26.98 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=32.9
Q ss_pred eEEeeecCCC------CCCCcccCCCCcCCCCCeEEEec--CCceEEEeecCCCCCCCEEEEcCCCcEEEEcccc
Q 024582 148 AAIVNYFGLG------DTLGGHLDDMEADWSKPIVSMSL--GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEA 214 (265)
Q Consensus 148 a~ivN~Y~~g------d~lg~H~D~~e~~~~~PIvSlSL--G~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~s 214 (265)
..-+|+|++- -+++.|.|-.-. +|=+ +...=+++. +++.-+.+...+|.+||.-|.+
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g~l-------TlL~q~~~v~GLQV~---~~g~W~~V~p~pgalVVNiGD~ 278 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPGGM-------TILLPDDNVAGLQVR---RDDAWITVKPVPDAFIVNIGDQ 278 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCceE-------EEEeeCCCCCcceee---ECCEEEECCCCCCeEEEEcchh
Confidence 4556999762 268899996422 2211 111112332 1344667777888888888875
No 33
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.31 E-value=3.2e+02 Score=24.92 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=33.3
Q ss_pred eEEeeecCCC------CCCCcccCCCCcCCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccc
Q 024582 148 AAIVNYFGLG------DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEA 214 (265)
Q Consensus 148 a~ivN~Y~~g------d~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~s 214 (265)
..-+|+|++- -+++.|.|-.-. .-|..=..| =.++.. ++.=+.+.-.+|.+||.-|++
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g~l---TlL~qd~v~---GLqV~~---~g~Wi~V~p~p~a~vVNiGD~ 180 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFGAI---TLLIQDDVE---GLQLLK---DAEWLMVPPISDAILIIIADQ 180 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCCee---EEEEeCCCC---ceEEee---CCeEEECCCCCCcEEEEccHH
Confidence 3569999873 467889996432 111110112 133321 344566777778888888876
No 34
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.05 E-value=1.7e+02 Score=25.64 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.2
Q ss_pred eEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcc
Q 024582 175 IVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212 (265)
Q Consensus 175 IvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G 212 (265)
-+++=+-.++-|.++.+ ++.-+.|+++.||++|+-.
T Consensus 95 eiR~il~GtgYfDVrd~--dd~WIRi~vekGDlivlPa 130 (179)
T KOG2107|consen 95 EIRYILEGTGYFDVRDK--DDQWIRIFVEKGDLIVLPA 130 (179)
T ss_pred heEEEeecceEEeeccC--CCCEEEEEEecCCEEEecC
Confidence 45677778999999875 4778999999999999976
No 35
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=20.04 E-value=81 Score=21.62 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=34.7
Q ss_pred cCCCCCCCcccCCCCcCCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccc
Q 024582 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF 218 (265)
Q Consensus 154 Y~~gd~lg~H~D~~e~~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~ 218 (265)
+.+|..+++|....+. -+.+=+-.+..+.+++. .+.|+.||.+++.....+.+
T Consensus 5 ~~pG~~~~~h~H~~~~-----e~~~vl~G~~~~~~~~~-------~~~l~~Gd~~~i~~~~~H~~ 57 (71)
T PF07883_consen 5 LPPGGSIPPHRHPGED-----EFFYVLSGEGTLTVDGE-------RVELKPGDAIYIPPGVPHQV 57 (71)
T ss_dssp EETTEEEEEEEESSEE-----EEEEEEESEEEEEETTE-------EEEEETTEEEEEETTSEEEE
T ss_pred ECCCCCCCCEECCCCC-----EEEEEEECCEEEEEccE-------EeEccCCEEEEECCCCeEEE
Confidence 5677888899854321 22333444566665532 68899999999998875544
Done!