BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024583
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5HBT2|HTPG_EHRRW Chaperone protein HtpG OS=Ehrlichia ruminantium (strain
           Welgevonden) GN=htpG PE=3 SV=1
          Length = 637

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 32  GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
           GI + S  P  + ++T  N+   EK   +L  R + +    A+S  E   K W +FG
Sbjct: 322 GIIDSSDLPLNISRETLQNNKIIEKIKRSLVKRVLSELKKKAESNIEDYTKFWDNFG 378


>sp|Q5FHC4|HTPG_EHRRG Chaperone protein HtpG OS=Ehrlichia ruminantium (strain Gardel)
           GN=htpG PE=3 SV=1
          Length = 637

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 32  GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
           GI + S  P  + ++T  N+   EK   +L  R + +    A+S  E   K W +FG
Sbjct: 322 GIIDSSDLPLNISRETLQNNKIIEKIKRSLVKRVLSELKKKAESNIEDYTKFWDNFG 378


>sp|A0MT11|GET4_SALSA Golgi to ER traffic protein 4 homolog OS=Salmo salar GN=get4 PE=2
           SV=1
          Length = 322

 Score = 32.3 bits (72), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 83/231 (35%), Gaps = 20/231 (8%)

Query: 29  TRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
            R G     G+     +K  Y +    + + TLF R + +       +      + F F 
Sbjct: 14  NRGGTQRVEGKLRASVEKGDYYEA--HQMYRTLFFRYISQAKHTDARELMYNGAQLF-FS 70

Query: 89  YD-YESFVDVSKRVMEGRSRQQ---QQEVVREV--LLSMLPPGAPAQFRKLFPPTKWAAE 142
           Y+   S  D+S  V+E   + +   + E +  +  L S++ P +P +   +    KW+  
Sbjct: 71  YNQLNSAADLSMLVLESLEKSEAKVEDEDLEHLAKLFSLMDPNSPERVAFVSRALKWSTG 130

Query: 143 FNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCRYLENSGCVGMCVNMCK---FP 199
            +  L  P  H L+       V +  E+  S          +  GC  M V       F 
Sbjct: 131 GSGKLGAPKLHQLLA------VTLWKEQNYSESRYHFLHSSDGEGCAQMLVEYSAQRGFR 184

Query: 200 TQ-DFFTREFGLPLTMIPNFEDMSCEM-VYGQVPPSFEDDPVSTQPCFTDI 248
           ++ D F  +  L    + N    S     Y Q  PS E DP   QP    I
Sbjct: 185 SEVDMFVAQAVLQFLCLKNKNSASVVFSTYTQKHPSIEKDPPFVQPLLNFI 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,991,220
Number of Sequences: 539616
Number of extensions: 4427642
Number of successful extensions: 8792
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8787
Number of HSP's gapped (non-prelim): 8
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)