Query 024583
Match_columns 265
No_of_seqs 95 out of 97
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hm3_A Nematocyst outer WALL a 36.7 12 0.00041 23.7 1.0 12 186-197 10-21 (31)
2 3e07_A Protein spaetzle; cysti 36.5 11 0.00038 30.2 1.1 25 167-192 34-58 (114)
3 2nx7_A Nematocyst outer WALL a 28.0 14 0.00048 23.0 0.2 17 183-199 7-23 (28)
4 2lyy_A Uncharacterized protein 23.7 79 0.0027 24.7 3.9 41 91-153 11-53 (96)
5 3v53_A RNA-binding protein 25; 20.8 1E+02 0.0034 25.0 4.0 70 48-134 37-107 (119)
6 4ec7_A VNGF, venom nerve growt 15.4 95 0.0033 24.8 2.7 29 163-191 39-69 (116)
7 2auv_A Potential NAD-reducing 13.1 56 0.0019 23.4 0.7 13 182-194 47-59 (85)
8 2ljs_A Trypsin inhibitor 3; be 13.0 57 0.002 20.7 0.6 16 177-194 8-23 (30)
9 1zoq_C CREB-binding protein, i 11.5 1.8E+02 0.0062 20.2 2.8 15 106-121 15-29 (47)
10 1f3k_A Omega-conotoxin txvii; 11.4 77 0.0026 19.5 0.8 19 178-196 6-24 (26)
No 1
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=36.67 E-value=12 Score=23.74 Aligned_cols=12 Identities=58% Similarity=1.251 Sum_probs=11.4
Q ss_pred cccccccccccc
Q 024583 186 SGCVGMCVNMCK 197 (265)
Q Consensus 186 SgC~GmCvN~CK 197 (265)
|||.|-|-.-||
T Consensus 10 sgcsgdcypeck 21 (31)
T 2hm3_A 10 SGCSGDCYPECK 21 (31)
T ss_dssp TTCCGGGTTTTC
T ss_pred CCcCccccCccC
Confidence 899999999998
No 2
>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster}
Probab=36.53 E-value=11 Score=30.25 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=17.4
Q ss_pred cCeeeeccEEeccceeeecccccccc
Q 024583 167 NGEKQRSGVHIKKCRYLENSGCVGMC 192 (265)
Q Consensus 167 ~G~~~~sgV~IeKCRyLEeSgC~GmC 192 (265)
|-..-.++|+||+|++ +.+-|...|
T Consensus 34 N~~~y~Q~vriE~C~~-~g~~C~~~~ 58 (114)
T 3e07_A 34 NNDEYKQAIQIEECEG-ADQPCDFAA 58 (114)
T ss_dssp --CCCEEEEEEEEESS-TTSBCTTGG
T ss_pred eCCCcEEEEEEEEeCC-CCCcccccc
Confidence 3344578999999999 556666665
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=27.99 E-value=14 Score=22.97 Aligned_cols=17 Identities=29% Similarity=0.983 Sum_probs=14.6
Q ss_pred eecccccccccccccCc
Q 024583 183 LENSGCVGMCVNMCKFP 199 (265)
Q Consensus 183 LEeSgC~GmCvN~CKiP 199 (265)
|++.||.+-|..-|.+-
T Consensus 7 lqqpgcssacapacrls 23 (28)
T 2nx7_A 7 LQQPGCSSACAPACRLS 23 (28)
T ss_dssp HHSTTCCGGGTTTCCHH
T ss_pred ccCCCccccccchhhee
Confidence 78899999999999763
No 4
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=23.75 E-value=79 Score=24.68 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCCChHHHHHhhcCCchhHHHHHhhhhhhhhh
Q 024583 91 YESFVDVSKRVMEGRS--RQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFH 153 (265)
Q Consensus 91 YdglVe~a~~~m~grs--~~~q~~~v~~vL~sl~Pp~~~~~fr~lfpp~~~~~e~nA~~T~~~f~ 153 (265)
=|.||++|+....+.. +-+-..+. |+ =++++|||++...|.
T Consensus 11 AD~fI~lAN~q~~~~e~~~g~Vsas~------------------ly----AaARfnAfv~a~~~~ 53 (96)
T 2lyy_A 11 ATELIKLANQQNQNTEIQTGEVSASF------------------MW----ALARYNAWFGSTSFE 53 (96)
T ss_dssp HHHHHHHHHHHHTSTTSCHHHHHHHH------------------HH----HHHHHSGGGGGGTCS
T ss_pred HHHHHHHHHHhhcccCcccchHHHHH------------------HH----HHHHHHHHHHHHhcc
Confidence 4789999998876543 22332222 12 268889998876553
No 5
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=20.84 E-value=1e+02 Score=24.96 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=51.1
Q ss_pred cccCcHHHHHHHHHHHHHHHHHcCCCCCchhhhhcccccCCCChhHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCCCh
Q 024583 48 KYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRV-MEGRSRQQQQEVVREVLLSMLPPGA 126 (265)
Q Consensus 48 ~Y~ds~lD~~~l~lF~~km~~~~G~~~~~~~~~k~~~~~~~~gYdglVe~a~~~-m~grs~~~q~~~v~~vL~sl~Pp~~ 126 (265)
.|+++.+|+-+--+-.+|+.+.+|.. =|.|||..-.. ....+|.+-++-+..+|..=-..++
T Consensus 37 ~vd~~~i~~~lkPWI~kKI~E~LG~e-----------------Ed~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV 99 (119)
T 3v53_A 37 IVDSILMERRIRPWINKKIIEYIGEE-----------------EATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFI 99 (119)
T ss_dssp TSCHHHHHHTHHHHHHHHHHHHTC--------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCc-----------------hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHH
Confidence 56678888889999999999999952 14578876665 4567888888888888887655555
Q ss_pred HHHHHhhc
Q 024583 127 PAQFRKLF 134 (265)
Q Consensus 127 ~~~fr~lf 134 (265)
-.++|.|+
T Consensus 100 ~kLWrlLI 107 (119)
T 3v53_A 100 VKMWRLLI 107 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666544
No 6
>4ec7_A VNGF, venom nerve growth factor; cobra NGF, unknown lipid, hormone; HET: L44; 2.60A {Naja atra}
Probab=15.43 E-value=95 Score=24.77 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=21.3
Q ss_pred EEeecCeeeeccEEecccee--eeccccccc
Q 024583 163 EVEINGEKQRSGVHIKKCRY--LENSGCVGM 191 (265)
Q Consensus 163 ~vev~G~~~~sgV~IeKCRy--LEeSgC~Gm 191 (265)
++..||...++=.++.|||. -..+||-|+
T Consensus 39 ~v~~~~~~~kQyF~et~C~~~~~~~~~Crgi 69 (116)
T 4ec7_A 39 NVNLDNKVYKEYFFETKCKNPNPEPSGCRGI 69 (116)
T ss_dssp EEEETTEEEECCEEEEEESCSCSBTTBSTTB
T ss_pred EEecCCceEEEEEEEEEeCCCCCCCCCCcce
Confidence 34456666678889999985 356889885
No 7
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=13.07 E-value=56 Score=23.39 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=10.8
Q ss_pred eeecccccccccc
Q 024583 182 YLENSGCVGMCVN 194 (265)
Q Consensus 182 yLEeSgC~GmCvN 194 (265)
-|++++|.|.|-+
T Consensus 47 ~l~~~~ClG~C~~ 59 (85)
T 2auv_A 47 SIDTLRCVGGCAL 59 (85)
T ss_dssp CCBSSSSSSSCTT
T ss_pred EEEECCccCcCCC
Confidence 3888999999964
No 8
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=13.00 E-value=57 Score=20.69 Aligned_cols=16 Identities=50% Similarity=1.194 Sum_probs=12.8
Q ss_pred eccceeeecccccccccc
Q 024583 177 IKKCRYLENSGCVGMCVN 194 (265)
Q Consensus 177 IeKCRyLEeSgC~GmCvN 194 (265)
++||| ..|.|.|-|+-
T Consensus 8 lkkck--rdsdcpgecic 23 (30)
T 2ljs_A 8 LKKCR--RDSDCPGECIC 23 (30)
T ss_dssp CCBCS--SGGGSSTTCCB
T ss_pred HHHhc--cccCCchhhee
Confidence 57887 57999999973
No 9
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=11.54 E-value=1.8e+02 Score=20.19 Aligned_cols=15 Identities=53% Similarity=0.395 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHHhc
Q 024583 106 SRQQQQEVVREVLLSM 121 (265)
Q Consensus 106 s~~~q~~~v~~vL~sl 121 (265)
|+++|+ -|..||+|=
T Consensus 15 sp~qqq-qvl~ILksn 29 (47)
T 1zoq_C 15 SPQQQQ-QVLNILKSN 29 (47)
T ss_dssp CHHHHH-HHHHHHHTC
T ss_pred CHHHHH-HHHHHHHcC
Confidence 455554 456899884
No 10
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=11.44 E-value=77 Score=19.54 Aligned_cols=19 Identities=26% Similarity=0.978 Sum_probs=15.6
Q ss_pred ccceeeecccccccccccc
Q 024583 178 KKCRYLENSGCVGMCVNMC 196 (265)
Q Consensus 178 eKCRyLEeSgC~GmCvN~C 196 (265)
|-|-.|..--|+|.|+-.|
T Consensus 6 E~CdvfsqnCC~G~C~fvC 24 (26)
T 1f3k_A 6 EPCDVFSLDCCTGICLGVC 24 (26)
T ss_dssp CCCCSSSCCSTTSCCSSSC
T ss_pred CccccccccccccEEEEEE
Confidence 4577888888999998777
Done!