Query 024583
Match_columns 265
No_of_seqs 95 out of 97
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 10:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fs1b1 a.157.1.1 (B:86-140) C 22.6 38 0.0028 22.0 3.4 24 90-113 26-53 (55)
2 d1odha_ d.239.1.1 (A:) Mgcm1 { 17.6 24 0.0017 28.1 1.6 35 179-222 55-91 (158)
3 d1sopa_ g.71.1.1 (A:) Mini-col 15.5 21 0.0015 20.4 0.6 10 188-197 6-15 (26)
4 d1v54j_ f.23.4.1 (J:) Mitochon 15.2 13 0.00095 25.2 -0.5 19 197-215 4-23 (58)
5 d1ha9a_ g.3.2.1 (A:) Trypsin i 13.9 24 0.0018 21.4 0.6 17 176-194 11-27 (34)
6 d1otga_ d.80.1.2 (A:) 5-carbox 13.7 10 0.00073 28.5 -1.6 71 48-120 6-86 (125)
7 d1nexa1 a.157.1.1 (A:116-185) 13.6 78 0.0057 21.2 3.4 24 90-113 27-54 (70)
8 d1xdpa1 a.7.15.1 (A:2-106) Pol 13.5 1.1E+02 0.0081 21.5 4.5 54 53-120 31-85 (105)
9 d2fug91 d.58.1.5 (9:26-179) NA 12.8 31 0.0023 25.7 1.1 21 187-219 75-95 (154)
10 d1szia_ a.24.23.1 (A:) Mannose 12.5 22 0.0016 29.6 0.2 11 149-159 210-220 (226)
No 1
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.57 E-value=38 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=17.9
Q ss_pred ChhHHHHHHHH-H---hcCCCHHHHHHH
Q 024583 90 DYESFVDVSKR-V---MEGRSRQQQQEV 113 (265)
Q Consensus 90 gYdglVe~a~~-~---m~grs~~~q~~~ 113 (265)
+.++|++++-+ + ++|+|++|.|+.
T Consensus 26 ~I~~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 26 DIKGLLDVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 56788888654 3 579999998764
No 2
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.56 E-value=24 Score=28.14 Aligned_cols=35 Identities=29% Similarity=0.629 Sum_probs=26.1
Q ss_pred cceeeecccccc--cccccccCcchhhhhhccCCceeeccCCccce
Q 024583 179 KCRYLENSGCVG--MCVNMCKFPTQDFFTREFGLPLTMIPNFEDMS 222 (265)
Q Consensus 179 KCRyLEeSgC~G--mCvN~CKiPTQ~FF~~~~GlpLtM~PNFeD~S 222 (265)
+++.|..| |.| +|-|.|.+|. |..++|.|---|..
T Consensus 55 N~~ilKKS-CLGVlvCs~~C~lp~--------g~~~~lRPAicdkA 91 (158)
T d1odha_ 55 NSRILKKS-CLGVVVCSRDCSTEE--------GRKIYLRPAICDKA 91 (158)
T ss_dssp CTTCEEEE-ECCEEEETTCCCCSS--------SCCCEECCCSSHHH
T ss_pred Cceeeccc-ceEEEEecCccCCCC--------CCeeeechHHHHHH
Confidence 56667777 877 4999999995 77788877655544
No 3
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp. [TaxId: 6086]}
Probab=15.54 E-value=21 Score=20.38 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=6.6
Q ss_pred cccccccccc
Q 024583 188 CVGMCVNMCK 197 (265)
Q Consensus 188 C~GmCvN~CK 197 (265)
|+..|+.+|+
T Consensus 6 cvaqcvptcp 15 (26)
T d1sopa_ 6 CVAQCVPTCP 15 (26)
T ss_dssp TTTCCCTTSC
T ss_pred hhhhccCCCc
Confidence 6666776664
No 4
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.16 E-value=13 Score=25.23 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=16.3
Q ss_pred cCc-chhhhhhccCCceeec
Q 024583 197 KFP-TQDFFTREFGLPLTMI 215 (265)
Q Consensus 197 KiP-TQ~FF~~~~GlpLtM~ 215 (265)
|+| .|+.|+++=|+|+++.
T Consensus 4 kv~e~Qk~FQ~~~g~PVhLK 23 (58)
T d1v54j_ 4 RVAEKQKLFQEDNGLPVHLK 23 (58)
T ss_dssp CHHHHHHHHHCSSCCCTTTT
T ss_pred hhHHHHHHhcCCCCceEEec
Confidence 555 6999999999999875
No 5
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=13.94 E-value=24 Score=21.38 Aligned_cols=17 Identities=47% Similarity=1.107 Sum_probs=13.7
Q ss_pred Eeccceeeecccccccccc
Q 024583 176 HIKKCRYLENSGCVGMCVN 194 (265)
Q Consensus 176 ~IeKCRyLEeSgC~GmCvN 194 (265)
.+|||| ..|.|.|-|+-
T Consensus 11 ilkkcr--rdsdc~~~cic 27 (34)
T d1ha9a_ 11 ILKKCR--RDSDCPGACIC 27 (34)
T ss_dssp CCCBCS--SGGGSCTTCCB
T ss_pred HHHHhc--cccCCCcccee
Confidence 468898 57999999974
No 6
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=10 Score=28.47 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=41.3
Q ss_pred cccCcHHHHHHHHHHHHHHHHHc---CCCCCchhhhhcccc-------cCCCChhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024583 48 KYNDGFFEKAFMTLFARKMEKFA---SPAKSKTETKKKRWF-------DFGYDYESFVDVSKRVMEGRSRQQQQEVVREV 117 (265)
Q Consensus 48 ~Y~ds~lD~~~l~lF~~km~~~~---G~~~~~~~~~k~~~~-------~~~~gYdglVe~a~~~m~grs~~~q~~~v~~v 117 (265)
+|.++.-|.+=+.-|-.+|.+.+ |.-+ ....|-... ..|..=++||.+.-+|+.|||.++.+++...+
T Consensus 6 EyS~nL~~~~d~~~L~~~l~~~~~~tg~F~--~~~IK~Ra~~~~~~~vadg~~~~~Fvhv~l~il~GRs~e~k~~l~~~l 83 (125)
T d1otga_ 6 ECSDNIREEADLPGLFAKVNPTLAATGIFP--LAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAGEML 83 (125)
T ss_dssp EEEGGGHHHHTHHHHHHHHHHHHHTTSSSC--GGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred EeCCChhhcCCHHHHHHHHHHHHHhCCCCC--ccccEEeEEEcceEEECCCCCCCeEEEEEeeecCCCCHHHHHHHHHHH
Confidence 68888777764555555555443 3211 111220000 01212246999999999999999988887655
Q ss_pred HHh
Q 024583 118 LLS 120 (265)
Q Consensus 118 L~s 120 (265)
+..
T Consensus 84 ~~~ 86 (125)
T d1otga_ 84 FEL 86 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 7
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.65 E-value=78 Score=21.19 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=17.9
Q ss_pred ChhHHHHHHHH-H---hcCCCHHHHHHH
Q 024583 90 DYESFVDVSKR-V---MEGRSRQQQQEV 113 (265)
Q Consensus 90 gYdglVe~a~~-~---m~grs~~~q~~~ 113 (265)
++++|++++-+ + ++|+|++|.++.
T Consensus 27 ~I~~Ll~l~c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 27 NIKPLLDAGCKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 67889988654 3 569999987665
No 8
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=13.53 E-value=1.1e+02 Score=21.52 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=31.2
Q ss_pred HHHHH-HHHHHHHHHHHHcCCCCCchhhhhcccccCCCChhHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 024583 53 FFEKA-FMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRVMEGRSRQQQQEVVREVLLS 120 (265)
Q Consensus 53 ~lD~~-~l~lF~~km~~~~G~~~~~~~~~k~~~~~~~~gYdglVe~a~~~m~grs~~~q~~~v~~vL~s 120 (265)
.+||+ |+++|+..|-|+--..- .|.-..++....--.|.++.+|-+.+......
T Consensus 31 llERlrFl~I~ssNLDEFFmVRV--------------AgLk~q~~~~~~~~dg~tp~e~L~~I~~~v~~ 85 (105)
T d1xdpa1 31 LIERMRFLGIYSNNLDEFYKVRF--------------AELKRRIIISEEQGSNSHSRHLLGKIQSRVLK 85 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH--------------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhhH--------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 56777 88888888888753210 12223344443333477887776666554443
No 9
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
Probab=12.76 E-value=31 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.694 Sum_probs=15.1
Q ss_pred cccccccccccCcchhhhhhccCCceeeccCCc
Q 024583 187 GCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFE 219 (265)
Q Consensus 187 gC~GmCvN~CKiPTQ~FF~~~~GlpLtM~PNFe 219 (265)
+| |.|+..|+.= -|+|++|||
T Consensus 75 ~C-G~Cve~CPt~-----------AI~~~~~~e 95 (154)
T d2fug91 75 FC-GLCEEACPTG-----------AIVLGYDFE 95 (154)
T ss_dssp CC-THHHHHCSSS-----------CEEECSCCC
T ss_pred CC-CCchhhCCCC-----------eEeccCccc
Confidence 45 7999999841 566777766
No 10
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.45 E-value=22 Score=29.59 Aligned_cols=11 Identities=45% Similarity=0.712 Sum_probs=8.2
Q ss_pred hhhhhccccce
Q 024583 149 VPFFHWLVGPS 159 (265)
Q Consensus 149 ~~~f~WLvGP~ 159 (265)
..=..|||||=
T Consensus 210 ntPL~WLVGPF 220 (226)
T d1szia_ 210 NTPAMWLVGPF 220 (226)
T ss_dssp CCCTTCEEEEE
T ss_pred CCCcccccCCC
Confidence 34468999995
Done!