Your job contains 1 sequence.
>024584
MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV
VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN
MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM
RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT
IGSRYVELFPSTPDEARRAESRSRQ
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024584
(265 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156897 - symbol:AT5G66010 species:3702 "Arabi... 889 4.6e-89 1
ZFIN|ZDB-GENE-060825-196 - symbol:grsf1 "G-rich RNA seque... 327 1.6e-29 1
MGI|MGI:2138741 - symbol:Hnrnpf "heterogeneous nuclear ri... 195 1.7e-28 2
RGD|620366 - symbol:Hnrnpf "heterogeneous nuclear ribonuc... 195 1.7e-28 2
UNIPROTKB|P52597 - symbol:HNRNPF "Heterogeneous nuclear r... 195 1.7e-28 2
UNIPROTKB|Q60HC3 - symbol:HNRNPF "Heterogeneous nuclear r... 195 1.7e-28 2
UNIPROTKB|E2RB90 - symbol:HNRNPF "Uncharacterized protein... 195 2.1e-28 2
UNIPROTKB|F1RG16 - symbol:HNRNPF "Uncharacterized protein... 195 2.1e-28 2
UNIPROTKB|Q5E9J1 - symbol:HNRNPF "Heterogeneous nuclear r... 194 2.2e-28 2
UNIPROTKB|D6RBM0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 178 2.2e-27 2
UNIPROTKB|F1Q0B7 - symbol:GRSF1 "Uncharacterized protein"... 179 8.3e-26 2
UNIPROTKB|F5H5I6 - symbol:GRSF1 "G-rich sequence factor 1... 180 2.2e-25 2
UNIPROTKB|E1BB17 - symbol:HNRNPH3 "Uncharacterized protei... 176 3.4e-25 2
UNIPROTKB|F1P8D3 - symbol:HNRNPH3 "Uncharacterized protei... 176 3.4e-25 2
UNIPROTKB|P31942 - symbol:HNRNPH3 "Heterogeneous nuclear ... 176 3.4e-25 2
RGD|1310019 - symbol:Hnrnph3 "heterogeneous nuclear ribon... 176 3.4e-25 2
UNIPROTKB|H0Y8R1 - symbol:GRSF1 "G-rich sequence factor 1... 180 4.6e-25 2
ZFIN|ZDB-GENE-030131-275 - symbol:hnrnph1l "heterogeneous... 178 6.3e-25 2
UNIPROTKB|H0YAK1 - symbol:GRSF1 "G-rich sequence factor 1... 180 6.7e-25 2
UNIPROTKB|Q12849 - symbol:GRSF1 "G-rich sequence factor 1... 180 8.5e-25 2
UNIPROTKB|I3L816 - symbol:HNRNPH1 "Uncharacterized protei... 178 9.6e-25 2
UNIPROTKB|F1LRK4 - symbol:Grsf1 "Protein Grsf1" species:1... 179 9.9e-25 2
UNIPROTKB|A6QPB2 - symbol:GRSF1 "Uncharacterized protein"... 179 1.0e-24 2
UNIPROTKB|E9PCY7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 178 1.0e-24 2
RGD|620840 - symbol:Hnrph1 "heterogeneous nuclear ribonuc... 174 1.1e-24 2
UNIPROTKB|Q8VHV7 - symbol:Hnrnph1 "Heterogeneous nuclear ... 174 1.1e-24 2
UNIPROTKB|E2R8D6 - symbol:E2R8D6 "Uncharacterized protein... 178 1.1e-24 2
UNIPROTKB|P31943 - symbol:HNRNPH1 "Heterogeneous nuclear ... 178 1.3e-24 2
UNIPROTKB|F2Z5H9 - symbol:HNRNPH1 "Uncharacterized protei... 178 1.3e-24 2
MGI|MGI:1891925 - symbol:Hnrnph1 "heterogeneous nuclear r... 178 1.3e-24 2
UNIPROTKB|G3V9Q3 - symbol:Hnrph1 "Heterogeneous nuclear r... 178 1.3e-24 2
UNIPROTKB|E1BF20 - symbol:HNRNPH1 "Uncharacterized protei... 178 1.5e-24 2
UNIPROTKB|G8JLB6 - symbol:HNRNPH1 "Heterogeneous nuclear ... 178 1.5e-24 2
UNIPROTKB|F1MZF0 - symbol:GRSF1 "Uncharacterized protein"... 179 1.7e-24 2
UNIPROTKB|F1NBV8 - symbol:HNRNPH1 "Uncharacterized protei... 178 2.3e-24 2
UNIPROTKB|F1NJJ4 - symbol:HNRNPH1 "Uncharacterized protei... 178 2.4e-24 2
UNIPROTKB|F1NJJ5 - symbol:HNRNPH1 "Uncharacterized protei... 178 2.8e-24 2
UNIPROTKB|F1NEG6 - symbol:HNRNPH1 "Uncharacterized protei... 178 2.9e-24 2
MGI|MGI:106479 - symbol:Grsf1 "G-rich RNA sequence bindin... 179 3.9e-24 2
UNIPROTKB|F1LMB8 - symbol:Grsf1 "Protein Grsf1" species:1... 179 3.9e-24 2
UNIPROTKB|Q5F3D2 - symbol:HNRNPH3 "Uncharacterized protei... 185 4.1e-24 2
UNIPROTKB|P55795 - symbol:HNRNPH2 "Heterogeneous nuclear ... 175 4.4e-24 2
UNIPROTKB|Q3SZF3 - symbol:HNRNPH2 "Heterogeneous nuclear ... 175 4.4e-24 2
UNIPROTKB|A5D9B4 - symbol:HNRPH2 "Heterogeneous nuclear r... 175 4.4e-24 2
UNIPROTKB|E2RJH5 - symbol:HNRNPH2 "Uncharacterized protei... 175 4.4e-24 2
MGI|MGI:1201779 - symbol:Hnrnph2 "heterogeneous nuclear r... 175 4.4e-24 2
RGD|1549784 - symbol:Hnrnph2 "heterogeneous nuclear ribon... 175 4.4e-24 2
UNIPROTKB|H0YBR2 - symbol:ESRP1 "Epithelial-splicing regu... 279 7.4e-24 1
ZFIN|ZDB-GENE-060421-3878 - symbol:zgc:136953 "zgc:136953... 198 7.5e-24 2
ZFIN|ZDB-GENE-040426-1856 - symbol:hnrnph1 "heterogeneous... 176 7.9e-24 2
UNIPROTKB|H0YBB3 - symbol:ESRP1 "Epithelial-splicing regu... 279 8.6e-24 1
UNIPROTKB|F1PQY5 - symbol:ESRP1 "Uncharacterized protein"... 278 1.1e-23 1
UNIPROTKB|F1P509 - symbol:ESRP1 "Uncharacterized protein"... 278 1.1e-23 1
MGI|MGI:1917326 - symbol:Esrp1 "epithelial splicing regul... 280 1.4e-23 1
UNIPROTKB|F1MVN3 - symbol:ESRP1 "Uncharacterized protein"... 279 1.8e-23 1
RGD|1560481 - symbol:Esrp1 "epithelial splicing regulator... 279 1.8e-23 1
UNIPROTKB|Q6NXG1 - symbol:ESRP1 "Epithelial splicing regu... 279 1.8e-23 1
UNIPROTKB|F1LP81 - symbol:Esrp1 "Epithelial-splicing regu... 279 1.8e-23 1
UNIPROTKB|F1PSN8 - symbol:ESRP1 "Uncharacterized protein"... 278 2.0e-23 1
UNIPROTKB|F1RUP2 - symbol:GRSF1 "Uncharacterized protein"... 177 2.0e-23 2
UNIPROTKB|F1RY52 - symbol:ESRP1 "Uncharacterized protein"... 279 2.0e-23 1
UNIPROTKB|F1NNR6 - symbol:LOC100858337 "Uncharacterized p... 277 4.8e-23 1
UNIPROTKB|I3LLW0 - symbol:RBM12 "Uncharacterized protein"... 277 5.7e-23 1
MGI|MGI:1922960 - symbol:Rbm12 "RNA binding motif protein... 277 6.0e-23 1
UNIPROTKB|D4A116 - symbol:Rbm12 "Protein Rbm12" species:1... 277 6.2e-23 1
ZFIN|ZDB-GENE-081022-16 - symbol:rbm12 "RNA binding motif... 276 6.3e-23 1
RGD|1594333 - symbol:Rbm12 "RNA binding motif protein 12"... 277 6.4e-23 1
UNIPROTKB|J9NZV3 - symbol:RBM12 "Uncharacterized protein"... 274 1.1e-22 1
UNIPROTKB|F1P982 - symbol:RBM12 "Uncharacterized protein"... 274 1.2e-22 1
UNIPROTKB|F1MND5 - symbol:RBM12 "Uncharacterized protein"... 274 1.2e-22 1
UNIPROTKB|Q9NTZ6 - symbol:RBM12 "RNA-binding protein 12" ... 273 1.5e-22 1
WB|WBGene00006367 - symbol:sym-2 species:6239 "Caenorhabd... 221 1.8e-22 2
UNIPROTKB|Q6DEZ7 - symbol:esrp1 "Epithelial splicing regu... 266 4.7e-22 1
UNIPROTKB|Q7ZY29 - symbol:esrp1 "Epithelial splicing regu... 266 4.7e-22 1
ZFIN|ZDB-GENE-070112-1732 - symbol:esrp1 "epithelial spli... 266 5.1e-22 1
UNIPROTKB|D6RIU0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 152 1.3e-21 2
WB|WBGene00020936 - symbol:hrpf-1 species:6239 "Caenorhab... 255 4.3e-21 1
UNIPROTKB|Q5ZLR4 - symbol:ESRP2 "Epithelial splicing regu... 257 4.5e-21 1
UNIPROTKB|I3L687 - symbol:HNRNPH2 "Uncharacterized protei... 158 6.2e-21 2
UNIPROTKB|D6RFM3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 152 9.1e-21 2
RGD|1310855 - symbol:Esrp2 "epithelial splicing regulator... 254 1.0e-20 1
MGI|MGI:1924661 - symbol:Esrp2 "epithelial splicing regul... 254 1.0e-20 1
UNIPROTKB|G3V8M2 - symbol:Esrp2 "Epithelial-splicing regu... 254 1.0e-20 1
UNIPROTKB|F1PA85 - symbol:ESRP2 "Uncharacterized protein"... 254 1.0e-20 1
ZFIN|ZDB-GENE-030131-9824 - symbol:esrp2 "epithelial spli... 254 1.1e-20 1
FB|FBgn0023441 - symbol:fus "fusilli" species:7227 "Droso... 254 1.7e-20 1
UNIPROTKB|Q9H6T0 - symbol:ESRP2 "Epithelial splicing regu... 249 3.5e-20 1
UNIPROTKB|F1MSN9 - symbol:ESRP2 "Uncharacterized protein"... 246 7.2e-20 1
UNIPROTKB|E1BMP6 - symbol:E1BMP6 "Uncharacterized protein... 167 1.0e-19 2
UNIPROTKB|F1LV61 - symbol:F1LV61 "Uncharacterized protein... 156 4.4e-19 2
UNIPROTKB|E7EN40 - symbol:HNRNPH1 "Heterogeneous nuclear ... 143 5.9e-19 2
UNIPROTKB|E5RGV0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 178 2.7e-18 2
UNIPROTKB|F1NWS6 - symbol:GRSF1 "Uncharacterized protein"... 167 3.5e-18 2
UNIPROTKB|H0YB39 - symbol:HNRNPH1 "Heterogeneous nuclear ... 158 4.0e-17 2
UNIPROTKB|G3N1Y9 - symbol:G3N1Y9 "Uncharacterized protein... 157 7.1e-17 2
UNIPROTKB|B4DHY1 - symbol:HNRNPH3 "cDNA FLJ57726, highly ... 165 2.1e-16 2
UNIPROTKB|D6R9T0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 152 9.1e-16 2
UNIPROTKB|D6RDU3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 152 9.1e-16 2
UNIPROTKB|D6RIH9 - symbol:HNRNPH1 "Heterogeneous nuclear ... 152 9.1e-16 2
UNIPROTKB|D6RJ04 - symbol:HNRNPH1 "Heterogeneous nuclear ... 152 9.1e-16 2
WARNING: Descriptions of 48 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2156897 [details] [associations]
symbol:AT5G66010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12898
IPI:IPI00541506 RefSeq:NP_201402.3 UniGene:At.28214
ProteinModelPortal:F4JZ11 SMR:F4JZ11 EnsemblPlants:AT5G66010.1
GeneID:836731 KEGG:ath:AT5G66010 OMA:YEVGSKR Uniprot:F4JZ11
Length = 255
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 176/268 (65%), Positives = 212/268 (79%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXV 60
MYGSRGA+ GSGG YEVGSKRQRMM+ NPY AV + V
Sbjct: 1 MYGSRGAMFGSGG----YEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAGGFP------V 50
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNC DIDI +FFAGL+IVDVLLV+KNG+FSGEAFVVFAGP+QVE ALQRDR N
Sbjct: 51 VRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHN 110
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---SRAKRYNDKDQMEHTEI 177
MGRRYVEVFRC +QDYYNAVA+E EG Y+ + SPPP SRAKR+++K+++E+TE+
Sbjct: 111 MGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEV 167
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
LKMRGLP+SV K +I++FF YK+I+ ++ + CRPDGKATGEA+VEF + EEA+RAM KD
Sbjct: 168 LKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKD 227
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
KM+IGSRYVELFP+T +EARRAE+RSRQ
Sbjct: 228 KMSIGSRYVELFPTTREEARRAEARSRQ 255
>ZFIN|ZDB-GENE-060825-196 [details] [associations]
symbol:grsf1 "G-rich RNA sequence binding factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060825-196 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BX323596 GeneTree:ENSGT00620000087736
IPI:IPI01023901 ProteinModelPortal:F8W4V6
Ensembl:ENSDART00000149868 ArrayExpress:F8W4V6 Bgee:F8W4V6
Uniprot:F8W4V6
Length = 403
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 79/203 (38%), Positives = 124/203 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLP++CT+ DI +FF+GLD+V+ +++N+ G+ SG+AFV FA E AL++
Sbjct: 213 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK 272
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
DR+ +G RY+E+F + +A+ S+ N + ND +P RA+ ++
Sbjct: 273 DREILGNRYIEIFPAMK----SAIPSQ-NRS--WQNDRVFTP---RAEDPPLRNTTVTKN 322
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++ MRGLPF K +IV+FF +++ K+ + P+GK TGEA F + E+A AM K
Sbjct: 323 VIHMRGLPFDAKAEDIVKFFAPVRLM--KVVVEFGPEGKPTGEAEAYFKTHEDAVLAMSK 380
Query: 237 DKMTIGSRYVELFPST--PDEAR 257
D+ I RY+EL+ ++ P E R
Sbjct: 381 DREFIMERYIELYLNSCPPSEER 403
Score = 186 (70.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 34/97 (35%), Positives = 66/97 (68%)
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
K+++E ++++RGLP+S + +I++FF ++ED + I GK++G+A+VEF +
Sbjct: 205 KERVETDTVVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKA 264
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
A++A+ KD+ +G+RY+E+FP+ A +++RS Q
Sbjct: 265 MAEKALKKDREILGNRYIEIFPAMKS-AIPSQNRSWQ 300
Score = 103 (41.3 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 60 VVRLRGLPFNCTDIDICKFFA------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+V+ +GLP++CT DI FF+ G++ V +L NK G+ SG+AF+ V A
Sbjct: 116 IVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILY-NKYGKPSGQAFIELEHEEDVGKA 174
Query: 114 LQRDRQNMGRRYVEVFRCKRQD 135
L + R + R++EV +D
Sbjct: 175 LDQHRHYLRDRFIEVREVTNKD 196
>MGI|MGI:2138741 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2138741
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0003727
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD ChiTaRS:HNRNPF EMBL:AK076478 EMBL:BC018185
EMBL:BC025481 EMBL:BC027003 EMBL:BC029163 EMBL:BC029764
EMBL:BC033483 EMBL:BC089313 IPI:IPI00226073 IPI:IPI00798511
RefSeq:NP_001159899.1 RefSeq:NP_001159900.1 RefSeq:NP_001159901.1
RefSeq:NP_001159902.1 RefSeq:NP_001159903.1 RefSeq:NP_001159904.1
RefSeq:NP_598595.1 UniGene:Mm.422979 UniGene:Mm.476420 PDB:2DB1
PDBsum:2DB1 ProteinModelPortal:Q9Z2X1 SMR:Q9Z2X1 IntAct:Q9Z2X1
STRING:Q9Z2X1 PhosphoSite:Q9Z2X1 REPRODUCTION-2DPAGE:Q9Z2X1
PaxDb:Q9Z2X1 PRIDE:Q9Z2X1 Ensembl:ENSMUST00000035493
Ensembl:ENSMUST00000163168 Ensembl:ENSMUST00000167182
Ensembl:ENSMUST00000167657 Ensembl:ENSMUST00000170346
Ensembl:ENSMUST00000180020 Ensembl:ENSMUST00000180341 GeneID:98758
KEGG:mmu:98758 UCSC:uc009dle.2 InParanoid:Q9Z2X1
EvolutionaryTrace:Q9Z2X1 NextBio:353639 Bgee:Q9Z2X1
Genevestigator:Q9Z2X1 GermOnline:ENSMUSG00000042079 Uniprot:Q9Z2X1
Length = 415
Score = 195 (73.7 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 163 (62.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 333 VEFATHEEAVAAMSKDRANMQHRYIELF 360
Score = 150 (57.9 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG 156
DR RRY+ + + D + A Y G Y+ ++ G
Sbjct: 211 DRPGTARRYIGIVKQAGLDRMRSGAYSAGYGG-YE-EYSG 248
>RGD|620366 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0043484 "regulation of RNA splicing"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:620366 GO:GO:0005634 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HSSP:Q9Z2X1 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:AB022209 EMBL:BC097275 EMBL:BC103634
IPI:IPI00210357 RefSeq:NP_001032362.1 RefSeq:NP_001032363.1
RefSeq:NP_001032364.1 RefSeq:NP_071792.1 UniGene:Rn.144596
ProteinModelPortal:Q794E4 SMR:Q794E4 IntAct:Q794E4 STRING:Q794E4
PhosphoSite:Q794E4 PRIDE:Q794E4 Ensembl:ENSRNOT00000019529
GeneID:64200 KEGG:rno:64200 UCSC:RGD:620366 InParanoid:Q794E4
NextBio:612884 Genevestigator:Q794E4 GermOnline:ENSRNOG00000014562
Uniprot:Q794E4
Length = 415
Score = 195 (73.7 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 163 (62.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 333 VEFATHEEAVAAMSKDRANMQHRYIELF 360
Score = 150 (57.9 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG 156
DR RRY+ + + D + A Y G Y+ ++ G
Sbjct: 211 DRPGTARRYIGIVKQAGLDRMRSGAYSAGYGG-YE-EYSG 248
>UNIPROTKB|P52597 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043484 "regulation of RNA splicing" evidence=IDA;IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0000398 GO:GO:0071013
EMBL:CH471160 EMBL:AL512654 HOGENOM:HOG000220896 HOVERGEN:HBG055557
HPA:HPA001359 HPA:HPA016884 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:L28010 EMBL:AK001364 EMBL:BC001432 EMBL:BC004254
EMBL:BC015580 EMBL:BC016736 EMBL:BC106008 IPI:IPI00003881
PIR:S43484 RefSeq:NP_001091674.1 RefSeq:NP_001091675.1
RefSeq:NP_001091676.1 RefSeq:NP_001091677.1 RefSeq:NP_001091678.1
RefSeq:NP_004957.1 UniGene:Hs.712955 UniGene:Hs.808 PDB:2HGL
PDB:2HGM PDB:2HGN PDB:2KFY PDB:2KG0 PDB:2KG1 PDB:3TFY PDBsum:2HGL
PDBsum:2HGM PDBsum:2HGN PDBsum:2KFY PDBsum:2KG0 PDBsum:2KG1
PDBsum:3TFY ProteinModelPortal:P52597 SMR:P52597 IntAct:P52597
MINT:MINT-1157890 STRING:P52597 PhosphoSite:P52597 DMDM:1710628
OGP:P52597 PaxDb:P52597 PeptideAtlas:P52597 PRIDE:P52597 DNASU:3185
Ensembl:ENST00000337970 Ensembl:ENST00000356053
Ensembl:ENST00000357065 Ensembl:ENST00000443950
Ensembl:ENST00000544000 GeneID:3185 KEGG:hsa:3185 UCSC:uc001jar.2
GeneCards:GC10M043881 HGNC:HGNC:5039 MIM:601037 neXtProt:NX_P52597
PharmGKB:PA162391271 InParanoid:P52597 PhylomeDB:P52597
ChiTaRS:HNRNPF EvolutionaryTrace:P52597 GenomeRNAi:3185
NextBio:12654 ArrayExpress:P52597 Bgee:P52597 CleanEx:HS_HNRNPF
Genevestigator:P52597 GermOnline:ENSG00000169813 Uniprot:P52597
Length = 415
Score = 195 (73.7 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 163 (62.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 333 VEFATHEEAVAAMSKDRANMQHRYIELF 360
Score = 150 (57.9 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 137 (53.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
>UNIPROTKB|Q60HC3 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9541 "Macaca fascicularis" [GO:0003727 "single-stranded RNA
binding" evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HOVERGEN:HBG055557 InterPro:IPR012996 Pfam:PF08080
EMBL:AB125204 EMBL:AB168246 ProteinModelPortal:Q60HC3 SMR:Q60HC3
PRIDE:Q60HC3 Uniprot:Q60HC3
Length = 415
Score = 195 (73.7 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 163 (62.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 333 VEFATHEEAVAAMSKDRANMQHRYIELF 360
Score = 150 (57.9 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 137 (53.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
>UNIPROTKB|E2RB90 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0000166
GO:GO:0003727 Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0071013
GeneTree:ENSGT00620000087736 KO:K12898 InterPro:IPR012996
Pfam:PF08080 CTD:3185 OMA:SDCTIRD EMBL:AAEX03015383
RefSeq:XP_848697.1 RefSeq:XP_856894.1 RefSeq:XP_856973.1
ProteinModelPortal:E2RB90 Ensembl:ENSCAFT00000011299 GeneID:477757
KEGG:cfa:477757 NextBio:20853178 Uniprot:E2RB90
Length = 414
Score = 195 (73.7 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 161 (61.7 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 333 VEFATHEEAVAAMSKDRANMQHRYIELF 360
Score = 149 (57.5 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 138 (53.6 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
>UNIPROTKB|F1RG16 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
KO:K12898 InterPro:IPR012996 Pfam:PF08080 CTD:3185 OMA:SDCTIRD
EMBL:CU468599 RefSeq:XP_001929089.1 RefSeq:XP_003359253.1
RefSeq:XP_003483523.1 UniGene:Ssc.93755 Ensembl:ENSSSCT00000011169
GeneID:100155475 KEGG:ssc:100155475 Uniprot:F1RG16
Length = 414
Score = 195 (73.7 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 158 (60.7 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + +EA AM KD+ + RY+ELF
Sbjct: 333 VEFATHDEAVAAMSKDRANMQHRYIELF 360
Score = 149 (57.5 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 138 (53.6 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
>UNIPROTKB|Q5E9J1 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0003727 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484 HSSP:Q9Z2X1
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 EMBL:BT020929 EMBL:BC102955
IPI:IPI00685278 RefSeq:NP_001014860.1 UniGene:Bt.23170
ProteinModelPortal:Q5E9J1 SMR:Q5E9J1 STRING:Q5E9J1 PRIDE:Q5E9J1
Ensembl:ENSBTAT00000011658 GeneID:506917 KEGG:bta:506917 CTD:3185
eggNOG:NOG326351 InParanoid:Q5E9J1 OMA:SDCTIRD NextBio:20867801
Uniprot:Q5E9J1
Length = 414
Score = 194 (73.4 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 37/80 (46%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EI+QFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 173 KERIGHRYIEVFKSSQEEVR 192
Score = 173 (66.0 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 173 KERIGHRYIEVFKSSQEE 190
Score = 161 (61.7 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 333 VEFATHEEAVAAMSKDRANMQHRYIELF 360
Score = 150 (57.9 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 72 KKDRESMGHRYIEVFKSHRTE 92
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
>UNIPROTKB|D6RBM0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HOGENOM:HOG000220896 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 IPI:IPI00964535 ProteinModelPortal:D6RBM0
SMR:D6RBM0 Ensembl:ENST00000505811 ArrayExpress:D6RBM0 Bgee:D6RBM0
Uniprot:D6RBM0
Length = 212
Score = 178 (67.7 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 152 (58.6 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
>UNIPROTKB|F1Q0B7 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016331 "morphogenesis of embryonic
epithelium" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 EMBL:AAEX03009136
Ensembl:ENSCAFT00000004672 OMA:GESEMAN Uniprot:F1Q0B7
Length = 281
Score = 179 (68.1 bits), Expect = 8.3e-26, Sum P(2) = 8.3e-26
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 52 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 111
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 112 REEIGNRYIEIFPSRRNEVRTHVGS 136
Score = 159 (61.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+ K
Sbjct: 52 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLK 110
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
+ IG+RY+E+FPS +E R
Sbjct: 111 HREEIGNRYIEIFPSRRNEVR 131
Score = 138 (53.6 bits), Expect = 8.3e-26, Sum P(2) = 8.3e-26
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + +GKATGEA V F + E+A AM KD+
Sbjct: 206 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRS 263
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 264 HVHHRYIELF 273
Score = 112 (44.5 bits), Expect = 0.00036, P = 0.00036
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF DI FFA L V + + + NG+ +GEA V F A+ +DR
Sbjct: 204 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRS 263
Query: 120 NMGRRYVEVF 129
++ RY+E+F
Sbjct: 264 HVHHRYIELF 273
Score = 64 (27.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
V+ AL++ R MG+RYVEV+ +D
Sbjct: 7 VQKALEKHRMYMGQRYVEVYEINNED 32
>UNIPROTKB|F5H5I6 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
IPI:IPI00979483 ProteinModelPortal:F5H5I6 SMR:F5H5I6 PRIDE:F5H5I6
Ensembl:ENST00000545193 UCSC:uc011caz.1 ArrayExpress:F5H5I6
Bgee:F5H5I6 Uniprot:F5H5I6
Length = 362
Score = 180 (68.4 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
R+ +G RY+E+F +R + V S Y+G
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGS---YKG 220
Score = 169 (64.5 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 64 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 121
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K + + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 122 QVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 180
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 181 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 145 (56.1 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 30/96 (31%), Positives = 56/96 (58%)
Query: 158 PPPSRAKRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPD 213
PPP + K ++++ +++ +GLP+S +++ FF D +I E+ IH D
Sbjct: 12 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 71
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
GK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 72 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 107
Score = 139 (54.0 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 33/90 (36%), Positives = 45/90 (50%)
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
P + D + MRGLPF +I+ FF K + +I + GKATGE
Sbjct: 267 PEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGE 324
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
A V F + E+A AM KD+ + RY+ELF
Sbjct: 325 ADVHFETHEDAVAAMLKDRSHVHHRYIELF 354
Score = 125 (49.1 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 93 EKHRMYMGQRYVEVYEINNED 113
>UNIPROTKB|E1BB17 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
EMBL:DAAA02061815 IPI:IPI00696173 ProteinModelPortal:E1BB17
SMR:E1BB17 PRIDE:E1BB17 Ensembl:ENSBTAT00000019039 Uniprot:E1BB17
Length = 346
Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 169 (64.5 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 78 KERIGHRYIEIFRSSRSE 95
Score = 165 (63.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 199 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 240 TIGSRYVELF-PSTP 253
+ RY+ELF STP
Sbjct: 257 NMQHRYIELFLNSTP 271
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>UNIPROTKB|F1P8D3 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
EMBL:AAEX03002774 RefSeq:XP_536369.2 ProteinModelPortal:F1P8D3
Ensembl:ENSCAFT00000000525 GeneID:479227 KEGG:cfa:479227
Uniprot:F1P8D3
Length = 346
Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 169 (64.5 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 78 KERIGHRYIEIFRSSRSE 95
Score = 165 (63.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 199 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 240 TIGSRYVELF-PSTP 253
+ RY+ELF STP
Sbjct: 257 NMQHRYIELFLNSTP 271
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>UNIPROTKB|P31942 [details] [associations]
symbol:HNRNPH3 "Heterogeneous nuclear ribonucleoprotein H3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG262593 HOVERGEN:HBG055557 KO:K12898 EMBL:L32610
EMBL:AF132360 EMBL:AF132361 EMBL:AF132362 EMBL:AF132363
EMBL:AF132364 EMBL:AK091411 EMBL:AK291547 EMBL:AL117395
EMBL:BC004511 EMBL:BC039824 IPI:IPI00013877 IPI:IPI00216492
IPI:IPI00216493 IPI:IPI00216494 IPI:IPI00216495 IPI:IPI00216496
PIR:T17207 RefSeq:NP_036339.1 RefSeq:NP_067676.2 UniGene:Hs.643472
ProteinModelPortal:P31942 SMR:P31942 IntAct:P31942
MINT:MINT-5004191 STRING:P31942 PhosphoSite:P31942 DMDM:23503095
PaxDb:P31942 PRIDE:P31942 Ensembl:ENST00000265866
Ensembl:ENST00000354695 GeneID:3189 KEGG:hsa:3189 UCSC:uc001jnw.4
UCSC:uc001jnx.4 CTD:3189 GeneCards:GC10P070090 HGNC:HGNC:5043
HPA:HPA038264 MIM:602324 neXtProt:NX_P31942 PharmGKB:PA162391325
InParanoid:P31942 OMA:PYDRPLG OrthoDB:EOG49P9ZV PhylomeDB:P31942
ChiTaRS:HNRNPH3 GenomeRNAi:3189 NextBio:12680 ArrayExpress:P31942
Bgee:P31942 CleanEx:HS_HNRNPH3 Genevestigator:P31942
GermOnline:ENSG00000096746 Uniprot:P31942
Length = 346
Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 169 (64.5 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 78 KERIGHRYIEIFRSSRSE 95
Score = 165 (63.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 199 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 240 TIGSRYVELF-PSTP 253
+ RY+ELF STP
Sbjct: 257 NMQHRYIELFLNSTP 271
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>RGD|1310019 [details] [associations]
symbol:Hnrnph3 "heterogeneous nuclear ribonucleoprotein H3
(2H9)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:1310019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 EMBL:CH473988
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OrthoDB:EOG49P9ZV
IPI:IPI00372854 RefSeq:NP_001102002.1 UniGene:Rn.60652 SMR:D4ABK7
Ensembl:ENSRNOT00000032600 GeneID:361838 KEGG:rno:361838
UCSC:RGD:1310019 NextBio:677788 Uniprot:D4ABK7
Length = 346
Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 169 (64.5 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 78 KERIGHRYIEIFRSSRSE 95
Score = 165 (63.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 199 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 240 TIGSRYVELF-PSTP 253
+ RY+ELF STP
Sbjct: 257 NMQHRYIELFLNSTP 271
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>UNIPROTKB|H0Y8R1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
PRIDE:H0Y8R1 Ensembl:ENST00000514161 Bgee:H0Y8R1 Uniprot:H0Y8R1
Length = 417
Score = 180 (68.4 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 188 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 247
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
R+ +G RY+E+F +R + V S Y+G
Sbjct: 248 REEIGNRYIEIFPSRRNEVRTHVGS---YKG 275
Score = 169 (64.5 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 119 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 176
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K + + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 177 QVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 235
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 236 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 267
Score = 145 (56.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/96 (31%), Positives = 56/96 (58%)
Query: 158 PPPSRAKRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPD 213
PPP + K ++++ +++ +GLP+S +++ FF D +I E+ IH D
Sbjct: 67 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 126
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
GK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 127 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 162
Score = 139 (54.0 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 33/90 (36%), Positives = 45/90 (50%)
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
P + D + MRGLPF +I+ FF K + +I + GKATGE
Sbjct: 322 PEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGE 379
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
A V F + E+A AM KD+ + RY+ELF
Sbjct: 380 ADVHFETHEDAVAAMLKDRSHVHHRYIELF 409
Score = 125 (49.1 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 88 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 147
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 148 EKHRMYMGQRYVEVYEINNED 168
>ZFIN|ZDB-GENE-030131-275 [details] [associations]
symbol:hnrnph1l "heterogeneous nuclear
ribonucleoprotein H1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC044161 IPI:IPI00512644 RefSeq:NP_997754.1
UniGene:Dr.782 ProteinModelPortal:Q803W8 SMR:Q803W8 STRING:Q803W8
PRIDE:Q803W8 GeneID:321556 KEGG:dre:321556 CTD:321556
InParanoid:Q803W8 NextBio:20807425 ArrayExpress:Q803W8 Bgee:Q803W8
Uniprot:Q803W8
Length = 407
Score = 178 (67.7 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 36/87 (41%), Positives = 56/87 (64%)
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ E ++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A
Sbjct: 102 ETEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIA 161
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEAR 257
++A+ K K IG RY+E+F S+ E R
Sbjct: 162 EKALKKHKERIGHRYIEIFKSSRAEVR 188
Score = 171 (65.3 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 168 HKERIGHRYIEIFKSSRAE 186
Score = 161 (61.7 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 51/176 (28%), Positives = 78/176 (44%)
Query: 79 FAGLDIVDVLLVNKNGRFSGEAFVVF-AGPIQVEFALQRDRQNMGRRYVEVF-RCKRQDY 136
FA DI + L R +F + +V + R+ MG + + R
Sbjct: 155 FASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGR 214
Query: 137 -YNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT--EILKMRGLPFSVKKSEIV 193
YN ++ +++ + + G R Y D + T + MRGLP+ + +I
Sbjct: 215 GYNGMSRGGSFDRMRRGGYGGGVSDGR---YGDGGNFQSTTGHCVHMRGLPYRATEPDIY 271
Query: 194 QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
FF + ++HI PDG+ TGEA VEF + E+A AM DK + RYVELF
Sbjct: 272 NFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSNDKANMQHRYVELF 325
Score = 145 (56.1 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+G I + GR SGEAFV ++ A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 115 QRDRQNMGRRYVEVFR 130
++DR++MG RYVEVF+
Sbjct: 68 KKDRESMGHRYVEVFK 83
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED--KIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S E+ +FF KI + IH +G+ +GEA+VE S ++ K A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RYVE+F S
Sbjct: 68 KKDRESMGHRYVEVFKS 84
Score = 129 (50.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ D+
Sbjct: 256 VHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSNDKA 315
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 316 NMQHRYVELF 325
>UNIPROTKB|H0YAK1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
OMA:LSFFSDC PRIDE:H0YAK1 Ensembl:ENST00000499044 Bgee:H0YAK1
Uniprot:H0YAK1
Length = 453
Score = 180 (68.4 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 224 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 283
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
R+ +G RY+E+F +R + V S Y+G
Sbjct: 284 REEIGNRYIEIFPSRRNEVRTHVGS---YKG 311
Score = 169 (64.5 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 155 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 212
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K + + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 213 QVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 271
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 272 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 303
Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/96 (31%), Positives = 56/96 (58%)
Query: 158 PPPSRAKRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPD 213
PPP + K ++++ +++ +GLP+S +++ FF D +I E+ IH D
Sbjct: 103 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 162
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
GK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 163 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 198
Score = 139 (54.0 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 33/90 (36%), Positives = 45/90 (50%)
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
P + D + MRGLPF +I+ FF K + +I + GKATGE
Sbjct: 358 PEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGE 415
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
A V F + E+A AM KD+ + RY+ELF
Sbjct: 416 ADVHFETHEDAVAAMLKDRSHVHHRYIELF 445
Score = 125 (49.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 124 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 183
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 184 EKHRMYMGQRYVEVYEINNED 204
>UNIPROTKB|Q12849 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 EMBL:CH471057
GO:GO:0016331 EMBL:U07231 EMBL:AK056891 EMBL:AK090755 EMBL:AK094806
EMBL:AK095799 EMBL:AK097055 EMBL:AK127161 EMBL:AC021989
EMBL:BC040485 IPI:IPI00478657 IPI:IPI00914953 PIR:S48081
RefSeq:NP_001091947.1 RefSeq:NP_002083.3 UniGene:Hs.309763 PDB:2LMI
PDBsum:2LMI ProteinModelPortal:Q12849 SMR:Q12849 IntAct:Q12849
STRING:Q12849 PhosphoSite:Q12849 DMDM:215274142 PaxDb:Q12849
PRIDE:Q12849 Ensembl:ENST00000254799 Ensembl:ENST00000439371
Ensembl:ENST00000502323 GeneID:2926 KEGG:hsa:2926 UCSC:uc003hfs.2
CTD:2926 GeneCards:GC04M071681 HGNC:HGNC:4610 HPA:HPA036985
MIM:604851 neXtProt:NX_Q12849 PharmGKB:PA29003 eggNOG:NOG319259
HOGENOM:HOG000220896 HOVERGEN:HBG055557 InParanoid:Q12849
OrthoDB:EOG4XPQGW ChiTaRS:GRSF1 GenomeRNAi:2926 NextBio:11601
ArrayExpress:Q12849 Bgee:Q12849 CleanEx:HS_GRSF1
Genevestigator:Q12849 GermOnline:ENSG00000132463 Uniprot:Q12849
Length = 480
Score = 180 (68.4 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
R+ +G RY+E+F +R + V S Y+G
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGS---YKG 338
Score = 169 (64.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 182 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 239
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K + + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 240 QVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 298
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 299 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/96 (31%), Positives = 56/96 (58%)
Query: 158 PPPSRAKRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPD 213
PPP + K ++++ +++ +GLP+S +++ FF D +I E+ IH D
Sbjct: 130 PPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 189
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
GK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 190 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 225
Score = 139 (54.0 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 33/90 (36%), Positives = 45/90 (50%)
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
P + D + MRGLPF +I+ FF K + +I + GKATGE
Sbjct: 385 PEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGE 442
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
A V F + E+A AM KD+ + RY+ELF
Sbjct: 443 ADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
Score = 125 (49.1 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 211 EKHRMYMGQRYVEVYEINNED 231
>UNIPROTKB|I3L816 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU915704
Ensembl:ENSSSCT00000031735 Uniprot:I3L816
Length = 423
Score = 178 (67.7 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 172 KERIGHRYIEIFKSSRAEVR 191
Score = 170 (64.9 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 172 KERIGHRYIEIFKSSRAE 189
Score = 158 (60.7 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 292 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 349
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 350 NMQHRYVELF 359
Score = 152 (58.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 11 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 70
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 71 KKDRETMGHRYVEVFKS 87
Score = 144 (55.7 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 11 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 70
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 71 KKDRETMGHRYVEVFK 86
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 237 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 291
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 292 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 351
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 352 QHRYVELF 359
>UNIPROTKB|F1LRK4 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 GeneTree:ENSGT00620000087736
IPI:IPI00364208 PRIDE:F1LRK4 Ensembl:ENSRNOT00000004551
ArrayExpress:F1LRK4 Uniprot:F1LRK4
Length = 361
Score = 179 (68.1 bits), Expect = 9.9e-25, Sum P(2) = 9.9e-25
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 191
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 192 REEIGNRYIEIFPSRRNEVRTHVGS 216
Score = 167 (63.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 63 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 120
Query: 167 NDKDQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K ++ ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 121 QVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 179
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 180 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 211
Score = 139 (54.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 25 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 84
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 85 QDVQKALEKHRMYMGQRYVEVY 106
Score = 137 (53.3 bits), Expect = 9.9e-25, Sum P(2) = 9.9e-25
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 286 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 343
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 344 HVQHRYIELF 353
Score = 126 (49.4 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 32 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 92 EKHRMYMGQRYVEVYEINNED 112
>UNIPROTKB|A6QPB2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 OrthoDB:EOG4XPQGW GeneTree:ENSGT00620000087736
EMBL:DAAA02018025 EMBL:DAAA02018026 EMBL:BC149233 IPI:IPI00705255
UniGene:Bt.53639 SMR:A6QPB2 Ensembl:ENSBTAT00000039551
Uniprot:A6QPB2
Length = 362
Score = 179 (68.1 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGS 217
Score = 173 (66.0 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 47/152 (30%), Positives = 76/152 (50%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 64 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 121
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ K M + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 122 HVKSAPMVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 180
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 181 EPEMASQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 138 (53.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 26 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 85
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 86 QDVQKALEKHRMYMGQRYVEVY 107
Score = 137 (53.3 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 287 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 344
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 345 HVHHRYIELF 354
Score = 125 (49.1 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 93 EKHRMYMGQRYVEVYEINNED 113
>UNIPROTKB|E9PCY7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00908896
ProteinModelPortal:E9PCY7 SMR:E9PCY7 PRIDE:E9PCY7
Ensembl:ENST00000510411 ArrayExpress:E9PCY7 Bgee:E9PCY7
Uniprot:E9PCY7
Length = 429
Score = 178 (67.7 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>RGD|620840 [details] [associations]
symbol:Hnrph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:620840 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006396 GO:GO:0043484
eggNOG:NOG262593 HSSP:P55795 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 InterPro:IPR012996 Pfam:PF08080
EMBL:AF367468 EMBL:AABR03073723 EMBL:BC129087 IPI:IPI00202027
IPI:IPI00851133 IPI:IPI00851145 RefSeq:NP_543172.1 UniGene:Rn.23677
ProteinModelPortal:Q8VHV7 SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7
PhosphoSite:Q8VHV7 World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7
GeneID:140931 KEGG:rno:140931 UCSC:RGD:620840 CTD:140931
NextBio:620799 ArrayExpress:Q8VHV7 Genevestigator:Q8VHV7
Uniprot:Q8VHV7
Length = 449
Score = 174 (66.3 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF + EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 173 (66.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C++ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 42/128 (32%), Positives = 56/128 (43%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|Q8VHV7 [details] [associations]
symbol:Hnrnph1 "Heterogeneous nuclear ribonucleoprotein H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006396 GO:GO:0043484 eggNOG:NOG262593 HSSP:P55795
HOGENOM:HOG000220896 HOVERGEN:HBG055557 KO:K12898
InterPro:IPR012996 Pfam:PF08080 EMBL:AF367468 EMBL:AABR03073723
EMBL:BC129087 IPI:IPI00202027 IPI:IPI00851133 IPI:IPI00851145
RefSeq:NP_543172.1 UniGene:Rn.23677 ProteinModelPortal:Q8VHV7
SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7 PhosphoSite:Q8VHV7
World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7 GeneID:140931 KEGG:rno:140931
UCSC:RGD:620840 CTD:140931 NextBio:620799 ArrayExpress:Q8VHV7
Genevestigator:Q8VHV7 Uniprot:Q8VHV7
Length = 449
Score = 174 (66.3 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF + EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 173 (66.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C++ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 42/128 (32%), Positives = 56/128 (43%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|E2R8D6 [details] [associations]
symbol:E2R8D6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AAEX03007686
Ensembl:ENSCAFT00000000520 Uniprot:E2R8D6
Length = 439
Score = 178 (67.7 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|P31943 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008266 "poly(U) RNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008266 GO:GO:0000166
GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0043484
GO:GO:0000398 GO:GO:0071013 EMBL:CH471165 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557 EMBL:L22009 EMBL:CR456778
EMBL:AK124530 EMBL:BC001348 IPI:IPI00013881 PIR:I39358
RefSeq:NP_001244222.1 RefSeq:NP_005511.1 UniGene:Hs.604001 PDB:2LXU
PDBsum:2LXU ProteinModelPortal:P31943 SMR:P31943 IntAct:P31943
MINT:MINT-1160934 STRING:P31943 PhosphoSite:P31943 DMDM:1710632
REPRODUCTION-2DPAGE:IPI00013881 REPRODUCTION-2DPAGE:P31943
PaxDb:P31943 PRIDE:P31943 Ensembl:ENST00000356731
Ensembl:ENST00000393432 Ensembl:ENST00000442819 GeneID:3187
KEGG:hsa:3187 UCSC:uc003mke.4 CTD:3187 GeneCards:GC05M179043
HGNC:HGNC:5041 HPA:HPA001359 HPA:HPA016884 MIM:601035
neXtProt:NX_P31943 PharmGKB:PA162391284 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 GenomeRNAi:3187 NextBio:12670 ArrayExpress:P31943
Bgee:P31943 CleanEx:HS_HNRNPH1 Genevestigator:P31943
GermOnline:ENSG00000169045 InterPro:IPR012996 Pfam:PF08080
Uniprot:P31943
Length = 449
Score = 178 (67.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|F2Z5H9 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0071013 GeneTree:ENSGT00620000087736 CTD:3187
KO:K12898 InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:CU915704
RefSeq:XP_003123691.1 UniGene:Ssc.13767 ProteinModelPortal:F2Z5H9
SMR:F2Z5H9 PRIDE:F2Z5H9 Ensembl:ENSSSCT00000015317 GeneID:100519535
KEGG:ssc:100519535 Uniprot:F2Z5H9
Length = 449
Score = 178 (67.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>MGI|MGI:1891925 [details] [associations]
symbol:Hnrnph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891925 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 CTD:3187 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080 EMBL:Y14196
EMBL:BC056224 IPI:IPI00133916 RefSeq:NP_067485.1 UniGene:Mm.21740
ProteinModelPortal:O35737 SMR:O35737 IntAct:O35737 STRING:O35737
PhosphoSite:O35737 REPRODUCTION-2DPAGE:IPI00133916
REPRODUCTION-2DPAGE:O35737 PaxDb:O35737 PRIDE:O35737 DNASU:59013
Ensembl:ENSMUST00000069304 Ensembl:ENSMUST00000109142 GeneID:59013
KEGG:mmu:59013 NextBio:314564 Bgee:O35737 Genevestigator:O35737
GermOnline:ENSMUSG00000007850 Uniprot:O35737
Length = 449
Score = 178 (67.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|G3V9Q3 [details] [associations]
symbol:Hnrph1 "Heterogeneous nuclear ribonucleoprotein H1,
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:CH473948
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
UniGene:Rn.23677 ProteinModelPortal:G3V9Q3 SMR:G3V9Q3 PRIDE:G3V9Q3
Ensembl:ENSRNOT00000059190 Uniprot:G3V9Q3
Length = 449
Score = 178 (67.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|E1BF20 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:DAAA02018972
IPI:IPI00734138 Ensembl:ENSBTAT00000012357 Uniprot:E1BF20
Length = 472
Score = 178 (67.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|G8JLB6 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 ProteinModelPortal:G8JLB6
SMR:G8JLB6 PRIDE:G8JLB6 Ensembl:ENST00000329433 OMA:FSECKIQ
PhylomeDB:G8JLB6 Bgee:G8JLB6 Uniprot:G8JLB6
Length = 472
Score = 178 (67.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 350
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 351 NMQHRYVELF 360
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 135 (52.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|F1MZF0 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:DAAA02018025 EMBL:DAAA02018026 IPI:IPI00700446
Ensembl:ENSBTAT00000011313 ArrayExpress:F1MZF0 Uniprot:F1MZF0
Length = 399
Score = 179 (68.1 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 170 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 229
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 230 REEIGNRYIEIFPSRRNEVRTHVGS 254
Score = 173 (66.0 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 47/152 (30%), Positives = 76/152 (50%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 101 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 158
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ K M + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 159 HVKSAPMVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 217
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 218 EPEMASQALLKHREEIGNRYIEIFPSRRNEVR 249
Score = 138 (53.6 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 63 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 122
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 123 QDVQKALEKHRMYMGQRYVEVY 144
Score = 137 (53.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 324 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 381
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 382 HVHHRYIELF 391
Score = 125 (49.1 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 70 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 129
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 130 EKHRMYMGQRYVEVYEINNED 150
>UNIPROTKB|F1NBV8 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00589313
Ensembl:ENSGALT00000009575 ArrayExpress:F1NBV8 Uniprot:F1NBV8
Length = 492
Score = 178 (67.7 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 143 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 202
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 203 KERIGHRYIEIFKSSRAEVR 222
Score = 170 (64.9 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 50/142 (35%), Positives = 68/142 (47%)
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK---RYND-K 169
L R ++GR + R +R Y +Y G D GS R RY D
Sbjct: 245 LTRGYNSLGRGS-GLERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRGMSDHRYGDGT 303
Query: 170 DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ T + MRGLP+ +++I FF + ++HI PDG+ TGEA VEF +
Sbjct: 304 STFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATH 361
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
E+A AM KDK + RYVELF
Sbjct: 362 EDAVAAMSKDKANMQHRYVELF 383
Score = 170 (64.9 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 143 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 202
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 203 KERIGHRYIEIFKSSRAE 220
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC--RPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI+ + I +G+ +GEA+ E S E+ K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 102 KKDRETMGHRYVEVFKS 118
Score = 143 (55.4 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 102 KKDRETMGHRYVEVFK 117
Score = 131 (51.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+
Sbjct: 314 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 373
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 374 NMQHRYVELF 383
>UNIPROTKB|F1NJJ4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00684493
Ensembl:ENSGALT00000034274 ArrayExpress:F1NJJ4 Uniprot:F1NJJ4
Length = 499
Score = 178 (67.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 143 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 202
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 203 KERIGHRYIEIFKSSRAEVR 222
Score = 170 (64.9 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 143 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 202
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 203 KERIGHRYIEIFKSSRAE 220
Score = 159 (61.0 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYND-KDQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 305 RYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 362
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 363 VEFATHEDAVAAMSKDKANMQHRYVELF 390
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC--RPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI+ + I +G+ +GEA+ E S E+ K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 102 KKDRETMGHRYVEVFKS 118
Score = 143 (55.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 102 KKDRETMGHRYVEVFK 117
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/128 (31%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + + S+ V
Sbjct: 268 GGYGGYDDYNGYNDGYGFGSDRF-----GREWTLFSAGMSDHRYGDGTSTFQSTTGHCVH 322
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 323 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 382
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 383 QHRYVELF 390
>UNIPROTKB|F1NJJ5 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00679403
Ensembl:ENSGALT00000034273 ArrayExpress:F1NJJ5 Uniprot:F1NJJ5
Length = 519
Score = 178 (67.7 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 163 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 222
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 223 KERIGHRYIEIFKSSRAEVR 242
Score = 170 (64.9 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 163 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 222
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 223 KERIGHRYIEIFKSSRAE 240
Score = 159 (61.0 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYND-KDQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 325 RYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 382
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 383 VEFATHEDAVAAMSKDKANMQHRYVELF 410
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC--RPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI+ + I +G+ +GEA+ E S E+ K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 122 KKDRETMGHRYVEVFKS 138
Score = 143 (55.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 122 KKDRETMGHRYVEVFK 137
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/128 (31%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + + S+ V
Sbjct: 288 GGYGGYDDYNGYNDGYGFGSDRF-----GREWTLFSAGMSDHRYGDGTSTFQSTTGHCVH 342
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 343 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 402
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 403 QHRYVELF 410
>UNIPROTKB|F1NEG6 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AADN02028603
EMBL:AADN02028604 EMBL:AADN02028605 EMBL:AADN02028590
EMBL:AADN02028591 EMBL:AADN02028592 EMBL:AADN02028593
EMBL:AADN02028594 EMBL:AADN02028595 EMBL:AADN02028596
EMBL:AADN02028597 EMBL:AADN02028598 EMBL:AADN02028599
EMBL:AADN02028600 EMBL:AADN02028601 EMBL:AADN02028602
IPI:IPI00823306 Ensembl:ENSGALT00000040330 ArrayExpress:F1NEG6
Uniprot:F1NEG6
Length = 521
Score = 178 (67.7 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 163 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 222
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 223 KERIGHRYIEIFKSSRAEVR 242
Score = 170 (64.9 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 163 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 222
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 223 KERIGHRYIEIFKSSRAE 240
Score = 159 (61.0 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYND-KDQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 327 RYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 384
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 385 VEFATHEDAVAAMSKDKANMQHRYVELF 412
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC--RPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI+ + I +G+ +GEA+ E S E+ K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 122 KKDRETMGHRYVEVFKS 138
Score = 144 (55.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 42/129 (32%), Positives = 60/129 (46%)
Query: 3 GSRGAILGSGGVSDGYEVGSKR-QRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVV 61
G G G +DGY GS R R +E + + S+ V
Sbjct: 288 GGYGGYDDYNGYNDGYGFGSDRFGRDLE----WTLFSAGMSDHRYGDGTSTFQSTTGHCV 343
Query: 62 RLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ N
Sbjct: 344 HMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKAN 403
Query: 121 MGRRYVEVF 129
M RYVE+F
Sbjct: 404 MQHRYVELF 412
Score = 143 (55.4 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 122 KKDRETMGHRYVEVFK 137
>MGI|MGI:106479 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106479 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016331 CTD:2926
eggNOG:NOG319259 HOGENOM:HOG000220896 HOVERGEN:HBG055557
OrthoDB:EOG4XPQGW EMBL:AK044889 EMBL:AK045986 EMBL:AK077782
IPI:IPI00453582 RefSeq:NP_848815.2 UniGene:Mm.332474
ProteinModelPortal:Q8C5Q4 SMR:Q8C5Q4 STRING:Q8C5Q4
PhosphoSite:Q8C5Q4 PaxDb:Q8C5Q4 PRIDE:Q8C5Q4 DNASU:231413
Ensembl:ENSMUST00000078945 GeneID:231413 KEGG:mmu:231413
UCSC:uc008yab.1 GeneTree:ENSGT00620000087736 InParanoid:Q8C5Q4
OMA:LSFFSDC NextBio:380544 Bgee:Q8C5Q4 CleanEx:MM_GRSF1
Genevestigator:Q8C5Q4 GermOnline:ENSMUSG00000044221 Uniprot:Q8C5Q4
Length = 479
Score = 179 (68.1 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGS 334
Score = 167 (63.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 181 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 238
Query: 167 NDKDQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K ++ ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 239 QVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 297
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 298 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 329
Score = 143 (55.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/82 (32%), Positives = 51/82 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
D+++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 143 DEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 202
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 203 QDVQKALEKHRMYMGQRYVEVY 224
Score = 137 (53.3 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 404 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 461
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 462 HVQHRYIELF 471
Score = 126 (49.4 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 210 EKHRMYMGQRYVEVYEINNED 230
>UNIPROTKB|F1LMB8 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 OMA:LSFFSDC IPI:IPI00949228
PRIDE:F1LMB8 Ensembl:ENSRNOT00000065436 ArrayExpress:F1LMB8
Uniprot:F1LMB8
Length = 479
Score = 179 (68.1 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGS 334
Score = 167 (63.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 181 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 238
Query: 167 NDKDQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
K ++ ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 239 QVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFE 297
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 298 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 329
Score = 139 (54.0 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 143 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 202
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 203 QDVQKALEKHRMYMGQRYVEVY 224
Score = 137 (53.3 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 404 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 461
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 462 HVQHRYIELF 471
Score = 126 (49.4 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 210 EKHRMYMGQRYVEVYEINNED 230
>UNIPROTKB|Q5F3D2 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:AADN02028014 EMBL:AJ851718 IPI:IPI00573787
RefSeq:NP_001012610.1 UniGene:Gga.22904 SMR:Q5F3D2
Ensembl:ENSGALT00000006294 GeneID:423686 KEGG:gga:423686
InParanoid:Q5F3D2 NextBio:20826120 Uniprot:Q5F3D2
Length = 342
Score = 185 (70.2 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
K D ++++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+
Sbjct: 6 KHNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQ 65
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
F S E A+ A+ K K IG RY+E+F S+ E R
Sbjct: 66 FASKEIAENALGKHKERIGHRYIEIFKSSKSEIR 99
Score = 167 (63.8 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 158 (60.7 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 202 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 260 HMQHRYIELF 269
Score = 125 (49.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 260 HMQHRYIELF 269
>UNIPROTKB|P55795 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:U78027 EMBL:AL035422 GO:GO:0000398
EMBL:CH471115 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 HPA:HPA001359 HPA:HPA016884 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:U01923 EMBL:BC130343 EMBL:BC130345 IPI:IPI00026230
RefSeq:NP_001027565.1 RefSeq:NP_062543.1 UniGene:Hs.432485 PDB:1WEZ
PDB:1WG5 PDBsum:1WEZ PDBsum:1WG5 ProteinModelPortal:P55795
SMR:P55795 IntAct:P55795 MINT:MINT-2804293 STRING:P55795
PhosphoSite:P55795 DMDM:2500576 REPRODUCTION-2DPAGE:IPI00026230
PaxDb:P55795 PeptideAtlas:P55795 PRIDE:P55795 DNASU:3188
Ensembl:ENST00000316594 GeneID:3188 KEGG:hsa:3188 UCSC:uc004ehm.3
GeneCards:GC0XP100663 HGNC:HGNC:5042 HPA:CAB004436 MIM:300610
neXtProt:NX_P55795 PharmGKB:PA162391316 InParanoid:P55795
OMA:MEANMTI PhylomeDB:P55795 EvolutionaryTrace:P55795
GenomeRNAi:3188 NextBio:12674 ArrayExpress:P55795 Bgee:P55795
CleanEx:HS_HNRNPH2 Genevestigator:P55795 GermOnline:ENSG00000126945
Uniprot:P55795
Length = 449
Score = 175 (66.7 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S EE K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 146 (56.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYGGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|Q3SZF3 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC102894 IPI:IPI00696405 RefSeq:NP_001069476.1
UniGene:Bt.8355 ProteinModelPortal:Q3SZF3 SMR:Q3SZF3 PRIDE:Q3SZF3
GeneID:534001 KEGG:bta:534001 CTD:3188 InParanoid:Q3SZF3
NextBio:20876226 Uniprot:Q3SZF3
Length = 449
Score = 175 (66.7 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 156 (60.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 146 (56.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 139 (54.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYGGYNDGYGFGSDRFGR-DQNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|A5D9B4 [details] [associations]
symbol:HNRPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 IPI:IPI00696405 UniGene:Bt.8355 OMA:MEANMTI
EMBL:DAAA02070773 EMBL:DAAA02070774 EMBL:BT030533 SMR:A5D9B4
Ensembl:ENSBTAT00000009864 InParanoid:A5D9B4 Uniprot:A5D9B4
Length = 449
Score = 175 (66.7 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 156 (60.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 146 (56.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYGGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|E2RJH5 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736 KO:K12898
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI
EMBL:AAEX03026717 RefSeq:XP_861916.1 RefSeq:XP_862053.2
Ensembl:ENSCAFT00000028063 GeneID:480989 KEGG:cfa:480989
Uniprot:E2RJH5
Length = 449
Score = 175 (66.7 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 156 (60.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 146 (56.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYGGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>MGI|MGI:1201779 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1201779
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:U58105 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:AK077716 EMBL:AK164115 EMBL:AK168116 EMBL:AK169104
EMBL:BC005461 IPI:IPI00108143 RefSeq:NP_063921.1 UniGene:Mm.315909
ProteinModelPortal:P70333 SMR:P70333 STRING:P70333
PhosphoSite:P70333 PaxDb:P70333 PRIDE:P70333 DNASU:56258
Ensembl:ENSMUST00000050331 Ensembl:ENSMUST00000059297
Ensembl:ENSMUST00000074950 Ensembl:ENSMUST00000113202
Ensembl:ENSMUST00000113203 GeneID:56258 KEGG:mmu:56258
InParanoid:P70333 NextBio:312148 Bgee:P70333 Genevestigator:P70333
GermOnline:ENSMUSG00000045427 Uniprot:P70333
Length = 449
Score = 175 (66.7 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 155 (59.6 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI + +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 146 (56.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYGGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>RGD|1549784 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2 (H')"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1549784 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0015629
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593
HSSP:P55795 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI EMBL:BC079240
IPI:IPI00464512 RefSeq:NP_001014041.1 UniGene:Rn.229731
ProteinModelPortal:Q6AY09 SMR:Q6AY09 IntAct:Q6AY09 STRING:Q6AY09
PhosphoSite:Q6AY09 PRIDE:Q6AY09 Ensembl:ENSRNOT00000015518
GeneID:308650 KEGG:rno:308650 UCSC:RGD:1549784 InParanoid:Q6AY09
NextBio:659306 Genevestigator:Q6AY09 Uniprot:Q6AY09
Length = 449
Score = 175 (66.7 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 173 KERIGHRYIEIFKSSRAEVR 192
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 158 (60.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 155 (59.6 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI + +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 146 (56.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 238 GGYGGYDDYGGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 292
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 293 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 352
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 353 QHRYVELF 360
>UNIPROTKB|H0YBR2 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000519505
Uniprot:H0YBR2
Length = 502
Score = 279 (103.3 bits), Expect = 7.4e-24, P = 7.4e-24
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 92 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 151
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 152 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 192
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 193 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 252
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 253 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 281
Score = 183 (69.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 55/207 (26%), Positives = 104/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 193 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 252
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 253 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 308
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 309 VR--DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 366
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K + RYVE+F + +E
Sbjct: 367 AFMAAQKCHKKNMKDRYVEVFQCSAEE 393
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 87 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 146
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 147 LALQRHKHHMGTRYIEVYKATGED 170
Score = 121 (47.7 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F G D+ +++N GR SG+AF+ + A
Sbjct: 313 IRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 371
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 372 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 414
>ZFIN|ZDB-GENE-060421-3878 [details] [associations]
symbol:zgc:136953 "zgc:136953" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060421-3878 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:BX530068 IPI:IPI00485717 UniGene:Dr.76052
Ensembl:ENSDART00000057651 Ensembl:ENSDART00000113082
Uniprot:B8A5E1
Length = 396
Score = 198 (74.8 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 52/150 (34%), Positives = 80/150 (53%)
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGI-YDNDFHGSPPPSR--AKRYND 168
F ++ + G +VE+ +D+ A+A + Y G Y F + KR
Sbjct: 42 FTFSKEGRPSGEAFVELK--SSEDFKKALAKDRKYMGHRYIEVFRSNRSEMDWVLKRSGP 99
Query: 169 KDQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D + +L++RGLPF K EIVQFF KI+ + I + G++TGEA+V+F S
Sbjct: 100 TDYDGSSGCMLRLRGLPFGCSKEEIVQFFSGLKIVPNGITLPMDYQGRSTGEAFVQFASK 159
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A++A+ K K IG RY+E+F S+ +E R
Sbjct: 160 EIAEKALGKHKERIGHRYIEIFKSSRNEMR 189
Score = 165 (63.1 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++CT ++ FF+ DIV + +K GR SGEAFV + AL
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIVGKVNGVCFTFSKEGRPSGEAFVELKSSEDFKKAL 68
Query: 115 QRDRQNMGRRYVEVFRCKRQ--DYYNAVASEVNYEG 148
+DR+ MG RY+EVFR R D+ + +Y+G
Sbjct: 69 AKDRKYMGHRYIEVFRSNRSEMDWVLKRSGPTDYDG 104
Score = 162 (62.1 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 37/84 (44%), Positives = 51/84 (60%)
Query: 167 NDKDQMEHT-EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
ND + H+ + MRGLPF +S++ FF + ++HI P+GK+TGEA VEF
Sbjct: 280 NDSNSGFHSGHFVHMRGLPFRATESDVAHFFGPLTPV--RVHIDMGPNGKSTGEADVEFR 337
Query: 226 SVEEAKRAMCKDKMTIGSRYVELF 249
S E+A AM KDK + RY+ELF
Sbjct: 338 SHEDAVSAMSKDKNHMQHRYIELF 361
Score = 162 (62.1 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++RLRGLPF C+ +I +FF+GL IV L ++ GR +GEAFV FA E AL +
Sbjct: 109 MLRLRGLPFGCSKEEIVQFFSGLKIVPNGITLPMDYQGRSTGEAFVQFASKEIAEKALGK 168
Query: 117 DRQNMGRRYVEVFRCKRQD---YY 137
++ +G RY+E+F+ R + YY
Sbjct: 169 HKERIGHRYIEIFKSSRNEMRAYY 192
Score = 157 (60.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 33/90 (36%), Positives = 55/90 (61%)
Query: 172 MEHTE---ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC---RPDGKATGEAYVEFV 225
M H + ++++RGLP+S + E+ FF D I+ K++ C +G+ +GEA+VE
Sbjct: 1 MSHNDEGYVVRIRGLPWSCTQEEVASFFSDCDIV-GKVNGVCFTFSKEGRPSGEAFVELK 59
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
S E+ K+A+ KD+ +G RY+E+F S E
Sbjct: 60 SSEDFKKALAKDRKYMGHRYIEVFRSNRSE 89
Score = 123 (48.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ D+ FF L V V + + NG+ +GEA V F A+ +D+
Sbjct: 292 VHMRGLPFRATESDVAHFFGPLTPVRVHIDMGPNGKSTGEADVEFRSHEDAVSAMSKDKN 351
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 352 HMQHRYIELF 361
>ZFIN|ZDB-GENE-040426-1856 [details] [associations]
symbol:hnrnph1 "heterogeneous nuclear
ribonucleoprotein H1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1856 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 CTD:3187 KO:K12898 InterPro:IPR012996
Pfam:PF08080 EMBL:CU855621 EMBL:CU658205 EMBL:BC065439
IPI:IPI00489200 RefSeq:NP_991247.1 UniGene:Dr.17640 SMR:Q6P0V0
Ensembl:ENSDART00000059918 GeneID:402984 KEGG:dre:402984
NextBio:20816791 Uniprot:Q6P0V0
Length = 403
Score = 176 (67.0 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+ K
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 168 HKERIGHRYIEIFKSSRAEVR 188
Score = 174 (66.3 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 37/79 (46%), Positives = 53/79 (67%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FFAGL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 168 HKERIGHRYIEIFKSSRAE 186
Score = 171 (65.3 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 53/176 (30%), Positives = 81/176 (46%)
Query: 79 FAGLDIVDVLLVNKNGRFSGEAFVVF-AGPIQVEFALQRDRQNMGRRYVEVF-RCKRQDY 136
FA DI + L R +F + +V + R+ MG + + R
Sbjct: 155 FASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPSPYDRPGGGRG 214
Query: 137 YNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK-DQMEHT--EILKMRGLPFSVKKSEIV 193
YN++ V++E + + G RY D + T + MRGLP+ +++I
Sbjct: 215 YNSMGRGVSFERMRRGGYGGDG------RYGDSGSSFQSTTGHCVHMRGLPYRATETDIY 268
Query: 194 QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
FF + ++H+ PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 269 NFFSPLNPV--RVHLEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 322
Score = 162 (62.1 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED--KIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S E+ +FF + KI + IH +G+ +GEA+VEF S E+ K A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 68 KKDRETMGHRYVEVFKSNSVE 88
Score = 141 (54.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+ I + GR SGEAFV F ++ A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 68 KKDRETMGHRYVEVFK 83
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V L + +GR +GEA V FA A+ +D+
Sbjct: 253 VHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 312
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 313 NMQHRYVELF 322
>UNIPROTKB|H0YBB3 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000517610
Bgee:H0YBB3 Uniprot:H0YBB3
Length = 522
Score = 279 (103.3 bits), Expect = 8.6e-24, P = 8.6e-24
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 85 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 144
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 145 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 185
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 186 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 245
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 246 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 274
Score = 183 (69.5 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 55/207 (26%), Positives = 104/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 186 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 245
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 246 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 301
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 302 VR--DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 359
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K + RYVE+F + +E
Sbjct: 360 AFMAAQKCHKKNMKDRYVEVFQCSAEE 386
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 80 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 139
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 140 LALQRHKHHMGTRYIEVYKATGED 163
Score = 121 (47.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F G D+ +++N GR SG+AF+ + A
Sbjct: 306 IRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 364
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 365 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 407
Score = 59 (25.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED 204
+++M+GL ++ EI+ FF+ Y+ ++D
Sbjct: 493 VVRMQGLAYNTGVKEILNFFQGYQCLKD 520
>UNIPROTKB|F1PQY5 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03015961 Ensembl:ENSCAFT00000014811 Uniprot:F1PQY5
Length = 521
Score = 278 (102.9 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 73/209 (34%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 66 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 166
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 167 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 189 (71.6 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 56/207 (27%), Positives = 105/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 167 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 282
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 283 VR--DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 340
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 341 AFMAAQKCHKKTMKDRYVEVFQCSAEE 367
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 61 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 120
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 121 LALQRHKHHMGTRYIEVYKATGED 144
Score = 114 (45.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 287 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 345
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 346 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 388
Score = 54 (24.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED 204
+++M+GL ++ EI+ FF+ Y+ D
Sbjct: 474 VVRMQGLAYNTGVKEILNFFQGYQYAAD 501
>UNIPROTKB|F1P509 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0043484 "regulation
of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GeneTree:ENSGT00620000087828 OMA:VAAMTEC
EMBL:AADN02024878 IPI:IPI00596521 Ensembl:ENSGALT00000025730
Uniprot:F1P509
Length = 523
Score = 278 (102.9 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 71/209 (33%), Positives = 112/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI KFF GL+I L +N GR +GEA V F + ALQR
Sbjct: 140 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 199
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ ++ G+ + ++ K E+
Sbjct: 200 HKHHMGNRYIEVYKATGEDFLKIAGAK------------GTS--NEVAQFLSK---ENQV 242
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+V E++ FF + + ++ + PD + TG+A+V F E A+ A
Sbjct: 243 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 302
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 303 LKKHKDLLGKRYIELFRSTAAEVQQVLNR 331
Score = 188 (71.2 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 56/207 (27%), Positives = 106/207 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T ++ FF V VL V + R +G+AFV+FA + A
Sbjct: 243 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 302
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 303 LKKHKDLLGKRYIELFRSTAAEVQQ-VLNRYSSTPLIPLP---TPPILPVLPQQFVPPTN 358
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I++F ++ I +H+ G+ +G+A+++ S +
Sbjct: 359 VR--DCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 416
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A + K T+ RYVE+F + +E
Sbjct: 417 AFLAAQRCHKKTMKDRYVEVFQCSAEE 443
Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FV+ E
Sbjct: 135 VDDNAVIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRD 194
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 195 LALQRHKHHMGNRYIEVYKATGED 218
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 35/110 (31%), Positives = 55/110 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI +F D+ +++N GR SG+AF+ + A
Sbjct: 363 IRLRGLPYAATIEDILEFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFLAA 421
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 422 QRCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 464
>MGI|MGI:1917326 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917326 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH466538 SUPFAM:SSF53098 GO:GO:0043484
EMBL:AL772170 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 EMBL:AK042164 EMBL:AK140848
EMBL:AK166376 EMBL:BC031468 EMBL:BC059280 IPI:IPI00377935
IPI:IPI00649037 IPI:IPI00828247 IPI:IPI00828788 IPI:IPI01027663
RefSeq:NP_918944.2 UniGene:Mm.387719 HSSP:Q9Z2X1
ProteinModelPortal:Q3US41 SMR:Q3US41 STRING:Q3US41 PaxDb:Q3US41
PRIDE:Q3US41 Ensembl:ENSMUST00000043781 Ensembl:ENSMUST00000108310
Ensembl:ENSMUST00000108313 Ensembl:ENSMUST00000147342
Ensembl:ENSMUST00000155519 GeneID:207920 KEGG:mmu:207920
UCSC:uc008rzk.2 UCSC:uc008rzl.2 UCSC:uc008rzm.2 UCSC:uc008rzn.1
InParanoid:Q3US41 NextBio:372085 Bgee:Q3US41 CleanEx:MM_RBM35A
Genevestigator:Q3US41 Uniprot:Q3US41
Length = 680
Score = 280 (103.6 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 191 (72.3 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 56/207 (27%), Positives = 106/207 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ ++ +G+RY+E+FR + V + + + +PP P +++
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 441
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 442 VR--DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDR 499
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 500 AFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 279
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 280 LALQRHKHHMGTRYIEVYKATGED 303
Score = 114 (45.2 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 446 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 504
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 505 QKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 547
Score = 51 (23.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK 200
+++M+GL ++ EI+ FF+ Y+
Sbjct: 633 VVRMQGLAYNTGVKEILNFFQGYQ 656
>UNIPROTKB|F1MVN3 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 CTD:54845
GeneTree:ENSGT00620000087828 KO:K14947 OMA:VAAMTEC
EMBL:DAAA02039465 IPI:IPI00913393 RefSeq:NP_001179931.1
UniGene:Bt.62027 Ensembl:ENSBTAT00000037192 GeneID:538640
KEGG:bta:538640 NextBio:20877490 Uniprot:F1MVN3
Length = 677
Score = 279 (103.3 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 189 (71.6 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 56/207 (27%), Positives = 105/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 442
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 443 IR--DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 500
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 AFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 131 (51.2 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T ++
Sbjct: 281 LALQRHKHHMGSRYIEVYKATGED 304
Score = 113 (44.8 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPP 160
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPP 546
Score = 51 (23.0 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK 200
+++M+GL ++ EI+ FF+ Y+
Sbjct: 630 VVRMQGLAYNTGVKEILNFFQGYQ 653
>RGD|1560481 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA;ISO;ISS] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
EMBL:AABR03040708 EMBL:AABR03042124 EMBL:BC166735 IPI:IPI00929919
IPI:IPI00948834 RefSeq:NP_001121036.2 UniGene:Rn.161971
Ensembl:ENSRNOT00000067129 GeneID:500409 KEGG:rno:500409
UCSC:RGD:1560481 NextBio:706112 ArrayExpress:B2RYD2
Genevestigator:B2RYD2 Uniprot:B2RYD2
Length = 677
Score = 279 (103.3 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 184 (69.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 60/212 (28%), Positives = 108/212 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRYNDK 169
L++ + +G+RY+E+FR + A+EV + + N F +P P + +
Sbjct: 387 LRKHKDLLGKRYIELFR--------STAAEV--QQVL-NRFSSAPLIPLPTAPIIPVLPQ 435
Query: 170 DQMEHTEI---LKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ T + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 436 QFVPPTNVRDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 114 (45.2 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 35/108 (32%), Positives = 53/108 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPP 160
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP
Sbjct: 506 QKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPP 546
Score = 51 (23.0 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK 200
+++M+GL ++ EI+ FF+ Y+
Sbjct: 630 VVRMQGLAYNTGVKEILNFFQGYQ 653
>UNIPROTKB|Q6NXG1 [details] [associations]
symbol:ESRP1 "Epithelial splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593 KO:K14947 EMBL:BX647570
EMBL:AC108860 EMBL:AP005660 EMBL:BC019932 EMBL:BC067098
EMBL:BC099916 EMBL:BC112043 EMBL:AK000178 IPI:IPI00184262
IPI:IPI00654821 IPI:IPI00789651 IPI:IPI00797684 IPI:IPI00889741
RefSeq:NP_001030087.2 RefSeq:NP_001116297.1 RefSeq:NP_001116298.1
RefSeq:NP_001116299.1 RefSeq:NP_060167.2 UniGene:Hs.487471 PDB:2DHA
PDBsum:2DHA ProteinModelPortal:Q6NXG1 SMR:Q6NXG1 STRING:Q6NXG1
PhosphoSite:Q6NXG1 DMDM:124020999 PaxDb:Q6NXG1 PRIDE:Q6NXG1
Ensembl:ENST00000358397 Ensembl:ENST00000423620
Ensembl:ENST00000433389 Ensembl:ENST00000454170 GeneID:54845
KEGG:hsa:54845 UCSC:uc003ygq.4 UCSC:uc003ygr.4 UCSC:uc003ygt.4
UCSC:uc003ygv.3 GeneCards:GC08P095653 HGNC:HGNC:25966 HPA:HPA023719
HPA:HPA023720 MIM:612959 neXtProt:NX_Q6NXG1 PharmGKB:PA164719324
InParanoid:Q6NXG1 OMA:VAAMTEC ChiTaRS:ESRP1
EvolutionaryTrace:Q6NXG1 GenomeRNAi:54845 NextBio:57677
ArrayExpress:Q6NXG1 Bgee:Q6NXG1 CleanEx:HS_RBM35A
Genevestigator:Q6NXG1 Uniprot:Q6NXG1
Length = 681
Score = 279 (103.3 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 183 (69.5 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 55/207 (26%), Positives = 104/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 442
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 443 VR--DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 500
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K + RYVE+F + +E
Sbjct: 501 AFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 121 (47.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F G D+ +++N GR SG+AF+ + A
Sbjct: 447 IRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
Score = 52 (23.4 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-EDK-IH 207
+++M+GL ++ EI+ FF+ Y+ ED IH
Sbjct: 634 VVRMQGLAYNTGVKEILNFFQGYQYATEDGLIH 666
>UNIPROTKB|F1LP81 [details] [associations]
symbol:Esrp1 "Epithelial-splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 IPI:IPI00558323
Ensembl:ENSRNOT00000010846 ArrayExpress:F1LP81 Uniprot:F1LP81
Length = 681
Score = 279 (103.3 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 184 (69.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 60/212 (28%), Positives = 108/212 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRYNDK 169
L++ + +G+RY+E+FR + A+EV + + N F +P P + +
Sbjct: 387 LRKHKDLLGKRYIELFR--------STAAEV--QQVL-NRFSSAPLIPLPTAPIIPVLPQ 435
Query: 170 DQMEHTEI---LKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ T + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 436 QFVPPTNVRDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 115 (45.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 506 QKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
Score = 51 (23.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK 200
+++M+GL ++ EI+ FF+ Y+
Sbjct: 634 VVRMQGLAYNTGVKEILNFFQGYQ 657
>UNIPROTKB|F1PSN8 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:AAEX03015961
Ensembl:ENSCAFT00000014804 Uniprot:F1PSN8
Length = 634
Score = 278 (102.9 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 73/209 (34%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 183 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 242
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 243 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 283
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 284 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 343
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 344 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 372
Score = 189 (71.6 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 56/207 (27%), Positives = 105/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 284 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 343
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 344 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVPPTN 399
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 400 VR--DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 457
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 458 AFMAAQKCHKKTMKDRYVEVFQCSAEE 484
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 178 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 237
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 238 LALQRHKHHMGTRYIEVYKATGED 261
Score = 113 (44.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 404 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 462
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPP 160
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP
Sbjct: 463 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPP 503
Score = 54 (24.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED 204
+++M+GL ++ EI+ FF+ Y+ D
Sbjct: 587 VVRMQGLAYNTGVKEILNFFQGYQYAAD 614
>UNIPROTKB|F1RUP2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:FP325194 RefSeq:XP_003129120.1 UniGene:Ssc.12808
Ensembl:ENSSSCT00000009793 GeneID:100516986 KEGG:ssc:100516986
Uniprot:F1RUP2
Length = 479
Score = 177 (67.4 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 38/85 (44%), Positives = 52/85 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGS 334
Score = 169 (64.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 46/152 (30%), Positives = 76/152 (50%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRY 166
+ F L RD + G +E+ QD A+ Y G + + + + K
Sbjct: 181 IHFLLNRDGKRRGDALIEME--SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL 238
Query: 167 NDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ K + + ++++RGLP+S + +IV FF I++ + R K TGEAYV+F
Sbjct: 239 HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRK-TGEAYVQFE 297
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 298 EPEMANQALLKHREEIGNRYIEIFPSRRNEVR 329
Score = 138 (53.6 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 404 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 461
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 462 HVHHRYIELF 471
Score = 138 (53.6 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 143 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 202
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 203 QDVQKALEKHRMYMGQRYVEVY 224
Score = 125 (49.1 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 210 EKHRMYMGQRYVEVYEINNED 230
>UNIPROTKB|F1RY52 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:CU468309
Ensembl:ENSSSCT00000006690 Uniprot:F1RY52
Length = 711
Score = 279 (103.3 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 256 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 315
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 316 HKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 356
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 357 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 416
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 417 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 445
Score = 189 (71.6 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 56/207 (27%), Positives = 105/207 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-LDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF I +L V +GR +G+AFV+FA + A
Sbjct: 357 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 416
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + V + + + +PP P +++
Sbjct: 417 LRKHKDLLGKRYIELFRSTAAEVQQ-VLNRFSSAPLIPLP---TPPIIPVLPQQFVTPTN 472
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 473 VR--DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 530
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 531 AFMAAQKCHKKTMKDRYVEVFQCSAEE 557
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 251 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 310
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 311 LALQRHKHHMGTRYIEVYKATGED 334
Score = 114 (45.2 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 477 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 535
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 536 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 578
Score = 51 (23.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK 200
+++M+GL ++ EI+ FF+ Y+
Sbjct: 664 VVRMQGLAYNTGVKEILNFFQGYQ 687
>UNIPROTKB|F1NNR6 [details] [associations]
symbol:LOC100858337 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AADN02019509 EMBL:AADN02019510 IPI:IPI00571732
Ensembl:ENSGALT00000002400 Uniprot:F1NNR6
Length = 868
Score = 277 (102.6 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 67/203 (33%), Positives = 105/203 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ T+ D+ +FF GL + + +L + GR +G V F P AL+R+R
Sbjct: 306 VSIHGMPFSATESDVKEFFLGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIY--DNDFHGSPP--------PSRAKRYNDK 169
M +RYVEV + + A + ++ H PP PS KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQTMGPSGQPHPPPPQPHSRSKSPSGQKRSRSR 424
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
E + ++GLPF + ++ FFK I+ED I+IA P+GKA GE +VEF + +
Sbjct: 425 SPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEAD 484
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
K A+C K IG+R++++ P T
Sbjct: 485 YKAALCHHKQYIGNRFIQVHPIT 507
Score = 104 (41.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 805 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAV 862
Score = 98 (39.6 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG 242
+P+++ K EI+QF + + E+ + I +G+ G+A V+F + ++A++A + +
Sbjct: 552 IPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRKKLN 611
Query: 243 SRYVELFPSTPDEARRAE 260
R V L T +E R E
Sbjct: 612 GRDVVLRLITVEEMRDIE 629
Score = 90 (36.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
Score = 72 (30.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +P+N T ++I +F GL + + +LV+ NG+ G+A V F A + R+
Sbjct: 549 ISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRK 608
Query: 120 NMGRRYV 126
+ R V
Sbjct: 609 KLNGRDV 615
>UNIPROTKB|I3LLW0 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:CU210870 EMBL:CU914282 Ensembl:ENSSSCT00000023753
Ensembl:ENSSSCT00000028045 Uniprot:I3LLW0
Length = 955
Score = 277 (102.6 bits), Expect = 5.7e-23, P = 5.7e-23
Identities = 67/202 (33%), Positives = 105/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 328 VSVHGMPFSAVENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 388 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 447 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 506
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 507 KAALCRHKQYMGNRFIQVHPIT 528
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 48/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 454 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 513
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + + ++
Sbjct: 514 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMMLNPEGDVNSAKV 566
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFSV K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 567 CAHITNIPFSVTKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 626
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 627 HRKKLNGREAFVHVVTLEDMREIE 650
Score = 116 (45.9 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 880 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 939
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 940 LNDRPIGSRKVKL 952
Score = 90 (36.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 84
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 85 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 132
>MGI|MGI:1922960 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1922960 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL833786 UniGene:Mm.27660
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AF345334 EMBL:AF393215 EMBL:AF393216 EMBL:AK017591
EMBL:AK029180 EMBL:AK035014 EMBL:AK080772 EMBL:AK166833
EMBL:BC026891 EMBL:BC027810 EMBL:BC052473 IPI:IPI00322263
RefSeq:NP_083673.3 RefSeq:NP_733486.2 UniGene:Mm.441281 PDB:2CQP
PDBsum:2CQP ProteinModelPortal:Q8R4X3 SMR:Q8R4X3 IntAct:Q8R4X3
STRING:Q8R4X3 PhosphoSite:Q8R4X3 PRIDE:Q8R4X3
Ensembl:ENSMUST00000059647 Ensembl:ENSMUST00000109604 GeneID:75710
KEGG:mmu:75710 UCSC:uc008nmh.1 InParanoid:Q3TKT7 ChiTaRS:RBM12
EvolutionaryTrace:Q8R4X3 NextBio:343756 Bgee:Q8R4X3
CleanEx:MM_RBM12 Genevestigator:Q8R4X3
GermOnline:ENSMUSG00000038171 Uniprot:Q8R4X3
Length = 992
Score = 277 (102.6 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 67/202 (33%), Positives = 105/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 174 (66.3 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 47/204 (23%), Positives = 97/204 (47%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QRELVLNPEGEVSSAKV 544
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHIVTLEDMREIE 628
Score = 117 (46.2 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 977 LNDRPIGSRKVKL 989
Score = 90 (36.7 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>UNIPROTKB|D4A116 [details] [associations]
symbol:Rbm12 "Protein Rbm12" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC118414 IPI:IPI00560597 Ensembl:ENSRNOT00000026700
ArrayExpress:D4A116 Uniprot:D4A116
Length = 1003
Score = 277 (102.6 bits), Expect = 6.2e-23, P = 6.2e-23
Identities = 67/202 (33%), Positives = 105/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 176 (67.0 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 47/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMVLNPEGEVSSAKV 544
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHIVTLEDMREIE 628
Score = 117 (46.2 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 928 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 987
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 988 LNDRPIGSRKVKL 1000
Score = 90 (36.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>ZFIN|ZDB-GENE-081022-16 [details] [associations]
symbol:rbm12 "RNA binding motif protein 12"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-081022-16 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG057691 CTD:10137 HOGENOM:HOG000143525
EMBL:BC162102 EMBL:BC162473 EMBL:AY226101 IPI:IPI00483025
RefSeq:NP_001003856.1 UniGene:Dr.133225 SMR:Q6XLI5 GeneID:445379
KEGG:dre:445379 NextBio:20832083 Uniprot:Q6XLI5
Length = 876
Score = 276 (102.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 67/198 (33%), Positives = 108/198 (54%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L GLPF+ + +I FF GL I + L+ N GR SG A V F P + AL+R+
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAG 363
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFH-----GSPPPSRAKRYNDKDQMEH 174
+G+RY+EV + + +V G +++ H SP PS +R + +
Sbjct: 364 MIGQRYIEVSPATERQWRESVGHS-KAGGDSEHNRHRRRSANSPTPSSGERARSRSPHKL 422
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ ++GLP+ + +I +FFK+ I+ED I+IA P+G+ATGE +VEF + + K A+
Sbjct: 423 DYCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAAL 482
Query: 235 CKDKMTIGSRYVELFPST 252
+GSR++++ P T
Sbjct: 483 GCHMQYMGSRFIQVHPIT 500
Score = 169 (64.5 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 51/203 (25%), Positives = 90/203 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP+ + I +FF LDIV+ + NGR +GE FV F + + AL
Sbjct: 426 VYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGCH 485
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
Q MG R+++V +++ Y + + I GS ++ K I
Sbjct: 486 MQYMGSRFIQVHPITKKNMYEKI------DAIRKR-MQGSQGDQKSSSGGGKSAKSCAHI 538
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+P++V K ++ F ++ E+ + + +G G+A V+F S E+A +A
Sbjct: 539 TN---IPYNVTKKDVRLFLDGIELFEESLKVLVDSNGNGLGQAIVQFKSDEDALKAERLH 595
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+ + R + T D+ + E
Sbjct: 596 RQKLNGRDAFVHLVTFDQMKEVE 618
Score = 113 (44.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+ GLPFSV + EI FF I + I + G+ +G A V+F S E+ A+ ++
Sbjct: 306 LHGLPFSVLEHEIRDFFHGLGI--ESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAG 363
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
IG RY+E+ P+T + R + S+
Sbjct: 364 MIGQRYIEVSPATERQWRESVGHSK 388
Score = 109 (43.4 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA-MC 235
I+K++ +PF+V EI+ FF Y+++ + + G TGEA V F S +EA A M
Sbjct: 801 IVKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAAVMD 860
Query: 236 KDKMTIGSRYVEL 248
+ IG+R V++
Sbjct: 861 LNDRPIGARKVKI 873
Score = 88 (36.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D V+ G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGG-VHIVGGEHGEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
++ V + + + N +
Sbjct: 63 SIKGSKVSLLLSSKTEMQNMI 83
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +P+N T D+ F G+++ + +LV+ NG G+A V F E AL+ +R
Sbjct: 538 ITNIPYNVTKKDVRLFLDGIELFEESLKVLVDSNGNGLGQAIVQFKSD---EDALKAER- 593
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R+ + +D A V ++ + + +PPP +AKR Q H +
Sbjct: 594 -LHRQ-----KLNGRD---AFVHLVTFDQM--KEVERNPPP-QAKRGQKSQQNAHAHL 639
>RGD|1594333 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH474050 eggNOG:NOG299235
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AC118414 EMBL:AY226099 IPI:IPI00421433
RefSeq:NP_001032746.1 UniGene:Rn.7119 SMR:Q6XLI7
Ensembl:ENSRNOT00000047246 GeneID:652928 KEGG:rno:652928
UCSC:RGD:1594333 HOGENOM:HOG000143525 InParanoid:Q6XLI7
NextBio:714873 Genevestigator:Q6XLI7 Uniprot:Q6XLI7
Length = 1032
Score = 277 (102.6 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 67/202 (33%), Positives = 105/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 176 (67.0 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 47/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMVLNPEGEVSSAKV 544
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHIVTLEDMREIE 628
Score = 117 (46.2 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 957 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 1016
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 1017 LNDRPIGSRKVKL 1029
Score = 90 (36.7 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>UNIPROTKB|J9NZV3 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03013911 Ensembl:ENSCAFT00000048972 Uniprot:J9NZV3
Length = 888
Score = 274 (101.5 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 67/202 (33%), Positives = 104/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 180 (68.4 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 47/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMMLNPEGDVSSAKV 544
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 112 (44.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 806 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 865
Query: 237 -DKMTIGSRYVELFPSTPDEAR 257
+ IGSR V+L + + +R
Sbjct: 866 LNDRPIGSR-VDLHSAVINASR 886
Score = 90 (36.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>UNIPROTKB|F1P982 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AAEX03013911 Ensembl:ENSCAFT00000013161
Uniprot:F1P982
Length = 945
Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 67/202 (33%), Positives = 104/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 328 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 388 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 447 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 506
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 507 KAALCRHKQYMGNRFIQVHPIT 528
Score = 180 (68.4 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 47/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 454 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 513
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + + ++
Sbjct: 514 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMMLNPEGDVSSAKV 566
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 567 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 626
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 627 HRKKLNGREAFVHVVTLEDMREIE 650
Score = 116 (45.9 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 870 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 929
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 930 LNDRPIGSRKVKL 942
Score = 90 (36.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 84
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 85 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 132
>UNIPROTKB|F1MND5 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 CTD:10137 OMA:PVFLGPL
EMBL:DAAA02036525 IPI:IPI00924418 RefSeq:NP_001185821.1
UniGene:Bt.91136 Ensembl:ENSBTAT00000061188 GeneID:100138139
KEGG:bta:100138139 NextBio:20789665 Uniprot:F1MND5
Length = 953
Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 67/202 (33%), Positives = 104/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 177 (67.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 47/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMILNPEGDVTSAKV 544
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 117 (46.2 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 878 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 937
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 938 LNDRPIGSRKVKL 950
Score = 90 (36.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>UNIPROTKB|Q9NTZ6 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CH471077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL109827 UniGene:Hs.700188 GermOnline:ENSG00000125976
eggNOG:NOG299235 HOVERGEN:HBG057691 EMBL:AJ289772 EMBL:AF345332
EMBL:AF345335 EMBL:AF393214 EMBL:AB018308 EMBL:AK092239
EMBL:BC012787 EMBL:BC013981 EMBL:AL834472 EMBL:AB015336
IPI:IPI00550308 RefSeq:NP_001185767.1 RefSeq:NP_001185769.1
RefSeq:NP_006038.2 RefSeq:NP_690051.1 PDB:1WEL PDB:2CPY PDB:2DNN
PDB:2EK1 PDB:2EK6 PDBsum:1WEL PDBsum:2CPY PDBsum:2DNN PDBsum:2EK1
PDBsum:2EK6 ProteinModelPortal:Q9NTZ6 SMR:Q9NTZ6 IntAct:Q9NTZ6
MINT:MINT-1366084 STRING:Q9NTZ6 PhosphoSite:Q9NTZ6 DMDM:30173387
PaxDb:Q9NTZ6 PeptideAtlas:Q9NTZ6 PRIDE:Q9NTZ6 DNASU:10137
Ensembl:ENST00000359646 Ensembl:ENST00000374104
Ensembl:ENST00000374114 GeneID:10137 KEGG:hsa:10137 UCSC:uc002xdq.3
CTD:10137 GeneCards:GC20M034236 HGNC:HGNC:9898 HPA:HPA043258
HPA:HPA043621 MIM:607179 neXtProt:NX_Q9NTZ6 PharmGKB:PA34261
InParanoid:Q9NTZ6 OMA:PVFLGPL OrthoDB:EOG44TP7C PhylomeDB:Q9NTZ6
EvolutionaryTrace:Q9NTZ6 GenomeRNAi:10137 NextBio:38349
ArrayExpress:Q9NTZ6 Bgee:Q9NTZ6 CleanEx:HS_RBM12
Genevestigator:Q9NTZ6 Uniprot:Q9NTZ6
Length = 932
Score = 273 (101.2 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 67/202 (33%), Positives = 104/202 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 178 (67.7 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 47/204 (23%), Positives = 98/204 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + ++ + + + + R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKI--DMIRKRLQNFSYD-----QREMILNPEGDVNSAKV 544
Query: 178 LK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 116 (45.9 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 90 (36.7 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 33/108 (30%), Positives = 46/108 (42%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-SEVNYEGI-YD----NDFHGSPPPS 161
+ V + + + N + S +E D N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>WB|WBGene00006367 [details] [associations]
symbol:sym-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0010172 "embryonic body morphogenesis"
evidence=IGI] [GO:0050879 "multicellular organismal movement"
evidence=IGI] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GO:GO:0010172 eggNOG:NOG262593 GeneTree:ENSGT00620000087828
KO:K14947 HSSP:P55795 EMBL:Z68319 EMBL:Z70038 EMBL:AY220985
PIR:T25208 RefSeq:NP_495960.2 UniGene:Cel.5905
ProteinModelPortal:Q22708 SMR:Q22708 IntAct:Q22708 STRING:Q22708
PaxDb:Q22708 EnsemblMetazoa:ZK1067.6 GeneID:174461
KEGG:cel:CELE_ZK1067.6 UCSC:ZK1067.6 CTD:174461 WormBase:ZK1067.6
HOGENOM:HOG000154473 InParanoid:Q22708 OMA:VENVMFT NextBio:884134
GO:GO:0050879 Uniprot:Q22708
Length = 618
Score = 221 (82.9 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 58/205 (28%), Positives = 107/205 (52%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNK-NGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+RGLP++CTD I FF L + D +L + + +GR +G+AFV F + L +
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ +G+RY+E+F+ + A+EV N + SP + A + + + +
Sbjct: 342 RQVIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVANAV---EAPEEKKKDC 390
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+++RGLP+ IV F D+ + +H+ G +GEA+++ ++ + A
Sbjct: 391 VRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAA 450
Query: 236 ---KDKMTIGS--RYVELFPSTPDE 255
+ M++G RY+E+F ++ +E
Sbjct: 451 GVHNNFMSVGKKKRYIEVFQASAEE 475
Score = 176 (67.0 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLP+ ++I FF+ K+ DKI R DG+ TG+A+V+F + E+A++ + K
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFETEEDAQQGLLK 340
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ IG RY+ELF ST E ++ R
Sbjct: 341 HRQVIGQRYIELFKSTAAEVQQVVKR 366
Score = 135 (52.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V R RGLP+ +D + +FFAGLDIV L ++ GR +GE V F+ + AL+R
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR 241
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
R + RY+EV++ ++ + VA+ + E +
Sbjct: 242 HRNFLLSRYIEVYKAGLDEFMH-VATGSSTEAM 273
>UNIPROTKB|Q6DEZ7 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
SUPFAM:SSF53098 GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:P55795 EMBL:BC076946 RefSeq:NP_001005057.1
UniGene:Str.5962 ProteinModelPortal:Q6DEZ7 SMR:Q6DEZ7 PRIDE:Q6DEZ7
Ensembl:ENSXETT00000032125 GeneID:448608 KEGG:xtr:448608
Xenbase:XB-GENE-985138 InParanoid:Q6DEZ7 Bgee:Q6DEZ7 Uniprot:Q6DEZ7
Length = 687
Score = 266 (98.7 bits), Expect = 4.7e-22, P = 4.7e-22
Identities = 69/209 (33%), Positives = 106/209 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + ++ I PD + TG+A+V F E A+ A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 53/205 (25%), Positives = 102/205 (49%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++ ++ +G+RY+E+FR + V + + + +PP +
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQ-VLNRYSSAPLIPLP---TPPIIPVLPQPFIPPVN 443
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ +++RGLP++ +I++F ++ I +H+ G+ +G+++++ S + A
Sbjct: 444 VRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAY 503
Query: 232 RAMCK-DKMTIGSRYVELFPSTPDE 255
A K K T+ RYVE+F + +E
Sbjct: 504 LAAQKCHKKTMKDRYVEVFQCSAEE 528
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 222 IDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 281
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 282 LALQRHKHHMGNRYIEVYKATGED 305
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI +F D+ +++N GR SG++F+ + A
Sbjct: 448 IRLRGLPYAATIEDILEFLGEFS-ADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAA 506
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 507 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 549
>UNIPROTKB|Q7ZY29 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
CTD:54845 KO:K14947 EMBL:BC044002 RefSeq:NP_001079524.1
UniGene:Xl.14515 HSSP:P55795 ProteinModelPortal:Q7ZY29 SMR:Q7ZY29
PRIDE:Q7ZY29 GeneID:379211 KEGG:xla:379211 Xenbase:XB-GENE-985143
Uniprot:Q7ZY29
Length = 688
Score = 266 (98.7 bits), Expect = 4.7e-22, P = 4.7e-22
Identities = 69/209 (33%), Positives = 106/209 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ K E+
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQV 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + ++ I PD + TG+A+V F E A+ A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 53/205 (25%), Positives = 102/205 (49%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++ ++ +G+RY+E+FR + V + + + +PP +
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQ-VLNRYSSAPLIPLP---TPPIIPVLPQPFIPPVN 443
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ +++RGLP++ +I++F ++ I +H+ G+ +G+++++ S + A
Sbjct: 444 VRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAY 503
Query: 232 RAMCK-DKMTIGSRYVELFPSTPDE 255
A K K T+ RYVE+F + +E
Sbjct: 504 LAAQKCHKKTMKDRYVEVFQCSAEE 528
Score = 132 (51.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 EMIDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 280 RDLALQRHKHHMGNRYIEVYKATGED 305
Score = 114 (45.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI +F D+ +++N GR SG++F+ + A
Sbjct: 448 IRLRGLPYAATIEDILEFLGEFS-ADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAA 506
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 507 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 549
Score = 44 (20.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK 200
+++M+GL ++ +I+ FF+ Y+
Sbjct: 638 MVRMQGLAYNSGVKDILNFFQGYQ 661
>ZFIN|ZDB-GENE-070112-1732 [details] [associations]
symbol:esrp1 "epithelial splicing regulatory
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070112-1732 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 EMBL:BC129044 EMBL:BC134218 IPI:IPI00829273
RefSeq:NP_001074045.1 UniGene:Dr.13001 ProteinModelPortal:A1L1G1
SMR:A1L1G1 STRING:A1L1G1 Ensembl:ENSDART00000103431 GeneID:560190
KEGG:dre:560190 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 InParanoid:A4FVM7
KO:K14947 OMA:HIRQVIH OrthoDB:EOG42RD72 NextBio:20883322
Bgee:A1L1G1 Uniprot:A1L1G1
Length = 714
Score = 266 (98.7 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 72/205 (35%), Positives = 106/205 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N + SR E+
Sbjct: 286 HKHHMGGRYIEVYKATGEDFLKIAGGTSNEVASF---------LSR----------ENQI 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH--IACR-PDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++QFF + D + R PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARR 258
+ K K +G RY+ELF ST E ++
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQ 411
Score = 192 (72.6 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 57/208 (27%), Positives = 103/208 (49%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-GLDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T + +FF+ + D +L V +GR +G+AFV+F+ + A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ + +G+RY+E+F+ + Q N +S PP+ +
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTFVPQTAAVP 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + +++RGLP+ +I+ F +Y I +H+ G+ +GEA+++ S E
Sbjct: 447 GVR--DCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSAE 504
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A + K ++ RYVE+F + E
Sbjct: 505 RAFLAAQRCHKRSMKERYVEVFACSAQE 532
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFA--GLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
VRLRGLP++ + DI F G DI +++N GR SGEAF+ + A Q
Sbjct: 452 VRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSAERAFLAAQ 511
Query: 116 R-DRQNMGRRYVEVFRCKRQDYYNAV--ASEVNYEGIYDNDFHGSPPP 160
R +++M RYVEVF C Q+ N V +N G+ SPPP
Sbjct: 512 RCHKRSMKERYVEVFACSAQEV-NIVLMGGTLNRSGL-------SPPP 551
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++ +++ RGLP+ +I +FF+ I + + G+ GEA V F S E
Sbjct: 219 ERVDDNTVIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEH 278
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T ++
Sbjct: 279 RDLALQRHKHHMGGRYIEVYKATGED 304
>UNIPROTKB|D6RIU0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967216
ProteinModelPortal:D6RIU0 SMR:D6RIU0 Ensembl:ENST00000504348
ArrayExpress:D6RIU0 Bgee:D6RIU0 Uniprot:D6RIU0
Length = 168
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 126 (49.4 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKA 168
Score = 118 (46.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFA 105
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFA 160
>WB|WBGene00020936 [details] [associations]
symbol:hrpf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:FO081084 GeneID:172395 KEGG:cel:CELE_W02D3.11 CTD:172395
RefSeq:NP_740877.1 ProteinModelPortal:Q9BIB7 SMR:Q9BIB7
DIP:DIP-24897N IntAct:Q9BIB7 MINT:MINT-1090704 STRING:Q9BIB7
PRIDE:Q9BIB7 EnsemblMetazoa:W02D3.11a.1 EnsemblMetazoa:W02D3.11a.2
UCSC:W02D3.11b WormBase:W02D3.11a HOGENOM:HOG000017293
InParanoid:Q9BIB7 OMA:EPYAQRE NextBio:875329 ArrayExpress:Q9BIB7
Uniprot:Q9BIB7
Length = 549
Score = 255 (94.8 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 69/205 (33%), Positives = 105/205 (51%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V+ RGLP+ T+ ++ FF I + + +NGR SG+A VVF AL++DR++
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN-DFHGSPPPSRAKRYNDKDQMEHT---E 176
+G RY+EVF E G D+ G+PP R Y+D+ +
Sbjct: 67 LGSRYIEVFPAGGAPTRRGDRGERGDRGDRDHYRSRGAPPRDR---YSDRGGPRSSGPDS 123
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+++RGLPFSV +I F I+ D I + + + GEAYV F ++E + A +
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQR 183
Query: 237 DKMTIGSRYVELFPSTP-DEARRAE 260
IG RY+E+F +T D +R AE
Sbjct: 184 HMKNIGHRYIEVFEATHRDLSRFAE 208
Score = 150 (57.9 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 36/79 (45%), Positives = 47/79 (59%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF+ T DI F A L IV D +L+ + R GEA+V F V+ A QR
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQR 183
Query: 117 DRQNMGRRYVEVFRCKRQD 135
+N+G RY+EVF +D
Sbjct: 184 HMKNIGHRYIEVFEATHRD 202
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++ RGLP+ + E+ FF + I + + I R +G+ +G+A V F + E+ A+ KD
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGI--ESLEIP-RRNGRTSGDAKVVFTNEEDYNNALKKD 63
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSR 264
+ +GSRY+E+FP+ RR + R
Sbjct: 64 REHLGSRYIEVFPAGGAPTRRGDRGER 90
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGL--DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+R+RG+PF ++ D+ FF + + V++L ++ R SG+A V+F + AL +D
Sbjct: 472 VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALMKD 531
Query: 118 RQNMGRRYVEV 128
+Q MG RY+E+
Sbjct: 532 KQYMGERYIEM 542
Score = 114 (45.2 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 29/102 (28%), Positives = 55/102 (53%)
Query: 152 NDFHGSPPP---SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+D + P P SR + Y Q +H +L+MRG+PF ++++ FF + + ++ +
Sbjct: 446 DDRYSKPEPYGYSRDRDYG-APQNQHF-VLRMRGVPFRASEADVYDFFHPIRPNQVEL-L 502
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
+ +G+A V F + ++ A+ KDK +G RY+E+ P
Sbjct: 503 RDHQFQRPSGDARVIFYNRKDYDDALMKDKQYMGERYIEMIP 544
>UNIPROTKB|Q5ZLR4 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484
eggNOG:NOG262593 GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401
KO:K14947 HSSP:Q9Z2X1 EMBL:AJ719670 IPI:IPI00574410
RefSeq:NP_001025737.1 UniGene:Gga.9032 ProteinModelPortal:Q5ZLR4
SMR:Q5ZLR4 PRIDE:Q5ZLR4 Ensembl:ENSGALT00000005333 GeneID:415710
KEGG:gga:415710 CTD:80004 InParanoid:Q5ZLR4 OMA:VIKQKYE
OrthoDB:EOG49078K NextBio:20819270 Uniprot:Q5ZLR4
Length = 701
Score = 257 (95.5 bits), Expect = 4.5e-21, P = 4.5e-21
Identities = 68/209 (32%), Positives = 108/209 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N ++ K E+
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLKIAGGTSN----------------EVAQFLSK---ENQV 327
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ + +++ F + + K + PDG+ TG+A+V F E A+ A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 178 (67.7 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 58/209 (27%), Positives = 102/209 (48%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V + LL K +GR +G+AFV+F+ + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ ++ +G+RY+E+FR + Q N S + PPP + +D
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIATGSIRD 447
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I+ F D I +H+ G+ +G+A+++ S +
Sbjct: 448 ------CVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQMKSAD 501
Query: 229 EAKRAM--CKDKMTIGSRYVELFPSTPDE 255
+A C KM + RYVE+F + +E
Sbjct: 502 KAFMVAQKCHKKM-MKDRYVEVFQCSGEE 529
Score = 137 (53.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+ E+
Sbjct: 220 ETVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQ 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 280 RDLALERHKHHMGSRYIEVYKATGEE 305
>UNIPROTKB|I3L687 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:MEANMTI
Ensembl:ENSSSCT00000030700 Uniprot:I3L687
Length = 437
Score = 158 (60.7 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 263 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 320
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 321 VEFATHEDAVAAMAKDKANMQHRYVELF 348
Score = 156 (60.0 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 34/81 (41%), Positives = 50/81 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 146 (56.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 143 (55.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPF C+ +I +FF+GL+IV NG EAFV FA E AL++ ++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVP------NGX---EAFVQFASQEIAEKALKKHKER 163
Query: 121 MGRRYVEVFRCKRQD 135
+G RY+E+F+ R +
Sbjct: 164 IGHRYIEIFKSSRAE 178
Score = 139 (54.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ P+G EA+V+F S E A++A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIV---------PNGX---EAFVQFASQEIAEKALKKH 160
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 161 KERIGHRYIEIFKSSRAEVR 180
Score = 137 (53.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/128 (32%), Positives = 58/128 (45%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N F S V
Sbjct: 226 GGYGGYDDYGGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSSFQSTTGHCVH 280
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 281 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 340
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 341 QHRYVELF 348
>UNIPROTKB|D6RFM3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
HOGENOM:HOG000134241 IPI:IPI00965435 ProteinModelPortal:D6RFM3
SMR:D6RFM3 Ensembl:ENST00000513225 ArrayExpress:D6RFM3 Bgee:D6RFM3
Uniprot:D6RFM3
Length = 163
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 9.1e-21, Sum P(2) = 9.1e-21
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 118 (46.6 bits), Expect = 9.1e-21, Sum P(2) = 9.1e-21
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQE 163
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFA 105
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFA 160
>RGD|1310855 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1310855 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
eggNOG:NOG262593 HOGENOM:HOG000112401 OrthoDB:EOG49078K
EMBL:BC166804 IPI:IPI00359594 UniGene:Rn.231924
ProteinModelPortal:B2RYJ8 SMR:B2RYJ8 PhosphoSite:B2RYJ8
PRIDE:B2RYJ8 UCSC:RGD:1310855 ArrayExpress:B2RYJ8
Genevestigator:B2RYJ8 Uniprot:B2RYJ8
Length = 716
Score = 254 (94.5 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/209 (33%), Positives = 111/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 307 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLEV--------------ARFLSREDQV---- 347
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 348 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAA 407
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 408 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 180 (68.4 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 62/214 (28%), Positives = 108/214 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-----VDVLLV--NKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ F G + VD LL + +GR +G+AF +FA +
Sbjct: 348 ILRLRGLPFSAGPADVLDFL-GPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQA 406
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--PPSRAKRYNDKD 170
AL+R + +G+RY+E+FR + A+EV + + N + SP P A
Sbjct: 407 ALRRHKGMLGKRYIELFR--------STAAEV--QQVL-NRYAASPLLPTLTAPLLPIPF 455
Query: 171 QMEH---TEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFV 225
+ + +++RGLP++ +I+ F + I +H+ G+ +G+A+++ +
Sbjct: 456 PLAGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMM 515
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
SVE A A + K + RYVE+ P + +E R
Sbjct: 516 SVERALAAAQRCHKKVMKERYVEVVPCSTEEMSR 549
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F E+
Sbjct: 240 DVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQ 299
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 300 RDLALQRHKHHMGVRYIEVYKATGEE 325
>MGI|MGI:1924661 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924661 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
HSSP:P55795 CTD:80004 OMA:VIKQKYE OrthoDB:EOG49078K EMBL:BC031444
EMBL:AK020578 IPI:IPI00276878 RefSeq:NP_789808.1 UniGene:Mm.183003
ProteinModelPortal:Q8K0G8 SMR:Q8K0G8 STRING:Q8K0G8
PhosphoSite:Q8K0G8 PaxDb:Q8K0G8 PRIDE:Q8K0G8
Ensembl:ENSMUST00000115979 GeneID:77411 KEGG:mmu:77411
UCSC:uc009nff.1 InParanoid:Q8K0G8 NextBio:346885 Bgee:Q8K0G8
CleanEx:MM_RBM35B Genevestigator:Q8K0G8 Uniprot:Q8K0G8
Length = 717
Score = 254 (94.5 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/209 (33%), Positives = 112/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLEV--------------ARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 182 (69.1 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 63/216 (29%), Positives = 108/216 (50%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVE 111
++RLRGLPF+ D+ C G D +L V + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--PPSRAKRYNDK 169
AL+R + +G+RY+E+FR + A+EV + + N + SP P A
Sbjct: 407 AALRRHKGMLGKRYIELFR--------STAAEV--QQVL-NRYAASPLLPTLTAPLLPIP 455
Query: 170 DQMEH---TEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ + +++RGLP++ +I+ F + I +H+ G+ +G+A+++
Sbjct: 456 FPLAGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
Query: 225 VSVEEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
+SVE A A C KM + RYVE+ P + +E R
Sbjct: 516 MSVERALAAAQRCHKKM-MKERYVEVVPCSTEEMSR 550
Score = 132 (51.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV E+
Sbjct: 241 DVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQ 300
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 301 RDLALQRHKHHMGVRYIEVYKATGEE 326
>UNIPROTKB|G3V8M2 [details] [associations]
symbol:Esrp2 "Epithelial-splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 RGD:1310855 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473972
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
UniGene:Rn.231924 RefSeq:NP_001100893.1 PRIDE:G3V8M2
Ensembl:ENSRNOT00000026873 GeneID:307810 KEGG:rno:307810
NextBio:657907 Uniprot:G3V8M2
Length = 717
Score = 254 (94.5 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/209 (33%), Positives = 111/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLEV--------------ARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 180 (68.4 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 62/214 (28%), Positives = 108/214 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-----VDVLLV--NKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ F G + VD LL + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLDFL-GPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--PPSRAKRYNDKD 170
AL+R + +G+RY+E+FR + A+EV + + N + SP P A
Sbjct: 408 ALRRHKGMLGKRYIELFR--------STAAEV--QQVL-NRYAASPLLPTLTAPLLPIPF 456
Query: 171 QMEH---TEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFV 225
+ + +++RGLP++ +I+ F + I +H+ G+ +G+A+++ +
Sbjct: 457 PLAGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMM 516
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
SVE A A + K + RYVE+ P + +E R
Sbjct: 517 SVERALAAAQRCHKKVMKERYVEVVPCSTEEMSR 550
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F E+
Sbjct: 241 DVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQ 300
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 301 RDLALQRHKHHMGVRYIEVYKATGEE 326
>UNIPROTKB|F1PA85 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
EMBL:AAEX03004121 RefSeq:XP_851504.1 Ensembl:ENSCAFT00000032365
GeneID:489745 KEGG:cfa:489745 Uniprot:F1PA85
Length = 717
Score = 254 (94.5 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/209 (33%), Positives = 112/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLEV--------------ARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 176 (67.0 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 60/213 (28%), Positives = 100/213 (46%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVE 111
++RLRGLPF+ D+ C G D +L V + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 112 FALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYND 168
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 407 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPAL-TAPLLPIPFPLAAGTGRD 465
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVS 226
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 --------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTS 517
Query: 227 VEEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
E A A + K + RYVE+ P + +E R
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSR 550
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV E+
Sbjct: 241 DVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQ 300
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 301 RDLALQRHKHHMGVRYIEVYKATGEE 326
>ZFIN|ZDB-GENE-030131-9824 [details] [associations]
symbol:esrp2 "epithelial splicing regulatory
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0043484 "regulation of RNA
splicing" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-9824 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:Q9Z2X1 CTD:80004 EMBL:BC045439 EMBL:BC065688
IPI:IPI00488983 IPI:IPI00769676 RefSeq:NP_954966.1 UniGene:Dr.200
ProteinModelPortal:Q7ZVR8 SMR:Q7ZVR8 STRING:Q7ZVR8 PRIDE:Q7ZVR8
GeneID:572992 KEGG:dre:572992 InParanoid:Q7ZVR8 NextBio:20891026
Uniprot:Q7ZVR8
Length = 736
Score = 254 (94.5 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 70/209 (33%), Positives = 109/209 (52%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A G N+ A+ + ++QM
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLK-IA------GGTSNEV--------AQFLSKENQM---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH---IACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ F + D PDG+ TG+A+V F E A+ A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 193 (73.0 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 58/210 (27%), Positives = 106/210 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F D + LL K +GR +G+AFV+FA + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++ +Q +G+RY+E+FR + + ++ I + PPP +
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLI--STLPPPPPPMVSVPVLATPPFI 443
Query: 174 HT----EILKMRGLPFSVKKSEIVQFFKDYKI-IEDK-IHIACRPDGKATGEAYVEFVSV 227
T + +++RGLP++ +I++F ++ I I+ +H+ G+ +G+A+++ S
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSA 503
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
+ A C KM + RYVE+F + +E
Sbjct: 504 DRAFMVAQKCHKKM-MKDRYVEVFQCSTEE 532
Score = 136 (52.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + + G+ GEA V F++ E
Sbjct: 218 EAVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEH 277
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 278 RDMALDRHKHHMGSRYIEVYKATGEE 303
>FB|FBgn0023441 [details] [associations]
symbol:fus "fusilli" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007173 "epidermal
growth factor receptor signaling pathway" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0005634
GO:GO:0007173 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 HSSP:P55795 EMBL:AF321979
EMBL:BT025963 EMBL:BT003299 EMBL:BT023793 EMBL:AY052064
RefSeq:NP_524691.1 RefSeq:NP_725479.1 RefSeq:NP_725480.1
RefSeq:NP_725481.1 RefSeq:NP_725482.1 RefSeq:NP_725483.1
UniGene:Dm.7727 ProteinModelPortal:Q9BJZ5 SMR:Q9BJZ5
MINT:MINT-1023688 STRING:Q9BJZ5 PRIDE:Q9BJZ5
EnsemblMetazoa:FBtr0087343 EnsemblMetazoa:FBtr0087344
EnsemblMetazoa:FBtr0087346 GeneID:44095 KEGG:dme:Dmel_CG8205
UCSC:CG8205-RD CTD:2521 FlyBase:FBgn0023441 InParanoid:A1ZA30
OMA:KFRYIEV OrthoDB:EOG4866TJ PhylomeDB:Q9BJZ5 ChiTaRS:FUS
GenomeRNAi:44095 NextBio:836730 Bgee:Q9BJZ5 Uniprot:Q9BJZ5
Length = 967
Score = 254 (94.5 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 67/214 (31%), Positives = 115/214 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKD-----YKIIE--DKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 144 (55.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPP 159
AL R R+++G+RY+E+FR + Q N NYE H PP
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYES---GGGHSQPP 490
Score = 129 (50.5 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
Score = 104 (41.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+++RGLP+ I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C
Sbjct: 548 IRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LC 605
Query: 236 KDK-----MTIGS--RYVELFPSTPDE 255
+ M G RY+E+F + D+
Sbjct: 606 AQRRHNHYMMFGKKYRYIEVFQCSGDD 632
Score = 38 (18.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 143 EVNYEGIYDNDFH 155
E+N + DNDF+
Sbjct: 221 ELNISSVEDNDFY 233
>UNIPROTKB|Q9H6T0 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0005813
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
HOGENOM:HOG000112401 KO:K14947 HSSP:Q9Z2X1 CTD:80004 OMA:VIKQKYE
OrthoDB:EOG49078K EMBL:AK025571 EMBL:AK025901 EMBL:BC030146
EMBL:AF289577 IPI:IPI00034099 IPI:IPI00827597 RefSeq:NP_079215.2
UniGene:Hs.436585 UniGene:Hs.592053 ProteinModelPortal:Q9H6T0
SMR:Q9H6T0 IntAct:Q9H6T0 STRING:Q9H6T0 PhosphoSite:Q9H6T0
DMDM:74761482 PaxDb:Q9H6T0 PRIDE:Q9H6T0 Ensembl:ENST00000473183
Ensembl:ENST00000565858 GeneID:80004 KEGG:hsa:80004 UCSC:uc002evq.1
UCSC:uc010cfa.1 GeneCards:GC16M068263 HGNC:HGNC:26152 HPA:HPA048597
MIM:612960 neXtProt:NX_Q9H6T0 PharmGKB:PA164719361
InParanoid:Q9H6T0 ChiTaRS:ESRP2 GenomeRNAi:80004 NextBio:70079
Bgee:Q9H6T0 CleanEx:HS_RBM35B Genevestigator:Q9H6T0 Uniprot:Q9H6T0
Length = 727
Score = 249 (92.7 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLEV--------------ARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 167 (63.8 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 54/210 (25%), Positives = 98/210 (46%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVE 111
++RLRGLPF+ D+ C G + +L V + +GR +G+AF +FA +
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTE--GLLFVRHPDGRPTGDAFALFACEELAQ 416
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL+R + +G+RY+E+FR + + + + P P +D
Sbjct: 417 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD- 475
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E
Sbjct: 476 -----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 530
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
A A + K + RYVE+ P + +E R
Sbjct: 531 ALAAAQRCHKKVMKERYVEVVPCSTEEMSR 560
Score = 133 (51.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/91 (27%), Positives = 49/91 (53%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>UNIPROTKB|F1MSN9 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VIKQKYE EMBL:DAAA02046691
IPI:IPI00699877 UniGene:Bt.94194 Ensembl:ENSBTAT00000005736
NextBio:20869663 Uniprot:F1MSN9
Length = 717
Score = 246 (91.7 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 68/209 (32%), Positives = 111/209 (53%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VV RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVWARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLEV--------------ARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 176 (67.0 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 60/213 (28%), Positives = 101/213 (47%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVE 111
++RLRGLPF+ D+ C G D +L V + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 112 FALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYND 168
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTL-TAPLLPIPFPLAAGTGRD 465
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI-IEDK-IHIACRPDGKATGEAYVEFVS 226
+++RGLP++ +I+ F + + I +H+ G+ +G+A+++ S
Sbjct: 466 --------CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTS 517
Query: 227 VEEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
E A A + K + RYVE+ P + +E R
Sbjct: 518 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSR 550
Score = 125 (49.1 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++ ++ RGLP+ ++ +FFK I + + G+ GEA + FV E+
Sbjct: 241 DVVDSETVVWARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQ 300
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 301 RDLALQRHKHHMGVRYIEVYKATGEE 326
>UNIPROTKB|E1BMP6 [details] [associations]
symbol:E1BMP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:DAAA02072842 IPI:IPI00699769 ProteinModelPortal:E1BMP6
Ensembl:ENSBTAT00000027332 Uniprot:E1BMP6
Length = 415
Score = 167 (63.8 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 34/81 (41%), Positives = 56/81 (69%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF + +I+QFF +I+ ++I + P+GK TGEA+V+F S E A++A+ K+
Sbjct: 115 VRLRGLPFGCTE-DIIQFFSGLEIMPNRITLPVDPEGKTTGEAFVQFASQELAEKALGKN 173
Query: 238 KMTI-GSRYVELFPSTPDEAR 257
K I G RY+E+F S+ + R
Sbjct: 174 KKRIIGHRYIEVFNSSQEGVR 194
Score = 157 (60.3 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT+ DI +FF+GL+I+ L V+ G+ +GEAFV FA E AL ++
Sbjct: 115 VRLRGLPFGCTE-DIIQFFSGLEIMPNRITLPVDPEGKTTGEAFVQFASQELAEKALGKN 173
Query: 118 RQNM-GRRYVEVFRCKRQ 134
++ + G RY+EVF ++
Sbjct: 174 KKRIIGHRYIEVFNSSQE 191
Score = 135 (52.6 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 165 RYNDKD-QMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + ++ T + MRGLP+ +++I F + ++HI PDG+ T EA
Sbjct: 277 RYRDGEFTVQSTTGHCVHMRGLPYKATENDIYNFSLLNPV---RVHIEIGPDGRVTSEAD 333
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM K++ + RY+ELF
Sbjct: 334 VEFATHEEAMVAMSKNRANMQHRYIELF 361
Score = 106 (42.4 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQ---VE 111
+V+L GLP++C+ D+ F + I D + + + GR SGE +F +Q V+
Sbjct: 12 LVKLHGLPWSCSVKDVQNFLSNCMIRDGVTCVHFIYSTEGRQSGELHQLFL-ELQSDDVK 70
Query: 112 FALQRDRQNMGRRYVEVFRCKRQD 135
AL++DR +MG Y+EVF+ R +
Sbjct: 71 MALKKDRVSMGHWYIEVFKSHRTE 94
>UNIPROTKB|F1LV61 [details] [associations]
symbol:F1LV61 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
IPI:IPI00952226 ProteinModelPortal:F1LV61
Ensembl:ENSRNOT00000020819 Uniprot:F1LV61
Length = 408
Score = 156 (60.0 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ ++GLP K E +QFF +I+ + + +GK TGEA+V+F S E A++A K
Sbjct: 114 VSLQGLPCGCTKEEAIQFFSGLEIVPNGNTLPVYLEGKITGEAFVQFASQELAEKAFGKH 173
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 174 KERIGHRYIEVFKSSQEEVR 193
Score = 144 (55.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV---DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP CT + +FF+GL+IV + L V G+ +GEAFV FA E A +
Sbjct: 114 VSLQGLPCGCTKEEAIQFFSGLEIVPNGNTLPVYLEGKITGEAFVQFASQELAEKAFGKH 173
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+EVF+ +++
Sbjct: 174 KERIGHRYIEVFKSSQEE 191
Score = 142 (55.0 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 49/151 (32%), Positives = 68/151 (45%)
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVN--YE---GIYDN-----DFHGSPPPSRAK-- 164
DR RRYV + R D + AS + YE G+ D D G S
Sbjct: 212 DRPGTARRYVGIVRQAGLDRMRSGASAGSGGYEEHSGLSDGYGFTTDLFGRDLSSYLSGM 271
Query: 165 ---RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
RY D + Q + RGLP+ +++I FF + ++H PDG+ TG
Sbjct: 272 YDHRYGDSEFTVQSATGHCVHTRGLPYKATENDIYNFFSPLNPV--RVHTEIGPDGRVTG 329
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
EA EF + EEA AM KD+ + RY++LF
Sbjct: 330 EADAEFATHEEAVAAMSKDR-AMQHRYIQLF 359
Score = 130 (50.8 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+L GLP++C+ ++ F + I D + + + GR SGEAFV V+ AL
Sbjct: 13 VVKLLGLPWSCSIPEVQNFLSDCTIHDGVVGVHFIYTREGRQSGEAFVKPESEEDVKLAL 72
Query: 115 QRDRQNMGRRYVEVFRCKR 133
+ DR++MG RY+EVF+ R
Sbjct: 73 KEDRESMGHRYIEVFKPHR 91
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+ GLP+S E+ F D I + + H +G+ +GEA+V+ S E+ K A+
Sbjct: 13 VVKLLGLPWSCSIPEVQNFLSDCTIHDGVVGVHFIYTREGRQSGEAFVKPESEEDVKLAL 72
Query: 235 CKDKMTIGSRYVELF 249
+D+ ++G RY+E+F
Sbjct: 73 KEDRESMGHRYIEVF 87
>UNIPROTKB|E7EN40 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00981333
ProteinModelPortal:E7EN40 SMR:E7EN40 Ensembl:ENST00000523137
ArrayExpress:E7EN40 Bgee:E7EN40 Uniprot:E7EN40
Length = 166
Score = 143 (55.4 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPD 254
KD+ T+G RYVE P+
Sbjct: 72 KKDRETMGHRYVEGLEIVPN 91
Score = 132 (51.5 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVE 127
++DR+ MG RYVE
Sbjct: 72 KKDRETMGHRYVE 84
Score = 115 (45.5 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 194 QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253
++ + +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+
Sbjct: 81 RYVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 140
Query: 254 DEAR 257
E R
Sbjct: 141 AEVR 144
Score = 107 (42.7 bits), Expect = 0.00020, P = 0.00020
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 77 KFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133
++ GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R
Sbjct: 81 RYVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 140
Query: 134 QD 135
+
Sbjct: 141 AE 142
>UNIPROTKB|E5RGV0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00974526
ProteinModelPortal:E5RGV0 SMR:E5RGV0 Ensembl:ENST00000519056
ArrayExpress:E5RGV0 Bgee:E5RGV0 Uniprot:E5RGV0
Length = 155
Score = 178 (67.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 61 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 120
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 121 KERIGHRYIEIFKSSRAEVR 140
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 61 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 120
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 121 KERIGHRYIEIFKSSRAE 138
Score = 57 (25.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 60 VVRLRGLPFNCTDIDICKFFA 80
VV++RGLP++C+ ++ +FF+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFS 32
>UNIPROTKB|F1NWS6 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 EMBL:AADN02009154 IPI:IPI00602123
Ensembl:ENSGALT00000018869 OMA:ISTKREM Uniprot:F1NWS6
Length = 411
Score = 167 (63.8 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VV LRGLPF+ T+ DI FFAGL I D+ V + R +GEA+V FA P V AL R ++
Sbjct: 175 VVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAPEMVAKALLRHKE 234
Query: 120 NMGRRYVEVF-RCKRQ 134
M RY+EV+ KR+
Sbjct: 235 YMENRYIEVYISTKRE 250
Score = 145 (56.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/157 (29%), Positives = 77/157 (49%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG--------IYDNDFHGSPPPS 161
+ F L RD + G +E+ + D A+ + Y G I+D D G
Sbjct: 107 IHFLLNRDGRRRGDALIELE--SKADVQKALEKNLRYMGTRYVKVHEIHDKDVDGL---L 161
Query: 162 RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
++ RY + + M +L +RGLPF + +I FF +I + + R + K TGEAY
Sbjct: 162 QSLRY-ESEVMSDGVVL-LRGLPFDSTEDDIADFFAGLRITD--MTFVYRGERK-TGEAY 216
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
V+F + E +A+ + K + +RY+E++ ST E +R
Sbjct: 217 VQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQR 253
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 169 KDQMEHTEIL-KMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFV 225
K++ E + L + G PF+ K E++ FF KI E+ IH DG+ G+A +E
Sbjct: 67 KEENEDSVFLIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIELE 126
Query: 226 SVEEAKRAMCKDKMTIGSRYVEL 248
S + ++A+ K+ +G+RYV++
Sbjct: 127 SKADVQKALEKNLRYMGTRYVKV 149
Score = 108 (43.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 60 VVRLRGLPFNCTD------IDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
++R G PF CT D CK G + + LL N++GR G+A + V+ A
Sbjct: 76 LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLL-NRDGRRRGDALIELESKADVQKA 134
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L+++ + MG RYV+V +D + + + YE
Sbjct: 135 LEKNLRYMGTRYVKVHEIHDKDV-DGLLQSLRYE 167
Score = 105 (42.0 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+RG P V +IV FF K +I I DG ATGEA V F S ++A AM K++
Sbjct: 333 VRGFPPQVSAQDIVDFFAPLK--PTRILIEYNSDGVATGEADVHFESYDDAVAAMAKERA 390
Query: 240 TIGSRYVELF 249
+ VE+F
Sbjct: 391 QLQFGTVEVF 400
>UNIPROTKB|H0YB39 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YB39 Ensembl:ENST00000521173 Bgee:H0YB39 Uniprot:H0YB39
Length = 277
Score = 158 (60.7 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 168 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 225
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 226 NMQHRYVELF 235
Score = 135 (52.6 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 113 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 167
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 168 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 227
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 228 QHRYVELF 235
Score = 111 (44.1 bits), Expect = 0.00046, P = 0.00046
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E R
Sbjct: 24 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR 67
Score = 99 (39.9 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 82 LDIV-DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
LD+ L + GR +GEAFV FA E AL++ ++ +G RY+E+F+ R +
Sbjct: 11 LDVARKKLFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 65
>UNIPROTKB|G3N1Y9 [details] [associations]
symbol:G3N1Y9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02057210 Ensembl:ENSBTAT00000065958 Uniprot:G3N1Y9
Length = 426
Score = 157 (60.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRL GLPF C+ ++ +FFAGL+IV L V+ R +GEAFV FA E AL++
Sbjct: 111 VRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQVDMQRRSTGEAFVWFASQEIAEMALKKH 170
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +GRRY+ +F+ R +
Sbjct: 171 KERIGRRYMGIFKSSRAE 188
Score = 145 (56.1 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++ GLPF K E+VQFF +I+ + I + ++TGEA+V F S E A+ A+ K
Sbjct: 111 VRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQVDMQRRSTGEAFVWFASQEIAEMALKKH 170
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+ +F S+ E R
Sbjct: 171 KERIGRRYMGIFKSSRAEVR 190
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ K+R LP+S E+ QFF D KI I +G+ +G+A+VE S +E K A+
Sbjct: 11 VAKVRSLPWSCSADEVQQFF-DCKIQNGAQGIRFIYTREGRQSGKAFVELESEDEVKVAL 69
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RY+E+F S
Sbjct: 70 KKDRETMGPRYIEVFKS 86
Score = 124 (48.7 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 60 VVRLRGLPFNCTDIDI-----CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
V ++R LP++C+ ++ CK G + + + GR SG+AFV +V+ AL
Sbjct: 11 VAKVRSLPWSCSADEVQQFFDCKIQNGAQGIR-FIYTREGRQSGKAFVELESEDEVKVAL 69
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR+ MG RY+EVF+ D
Sbjct: 70 KKDRETMGPRYIEVFKSNNAD 90
Score = 77 (32.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
+G+ TGEA VEF + E+A A KDK + Y ELF S
Sbjct: 311 NGRVTGEADVEFATHEDAVAATSKDKANMHHMY-ELFDS 348
>UNIPROTKB|B4DHY1 [details] [associations]
symbol:HNRNPH3 "cDNA FLJ57726, highly similar to
Heterogeneous nuclear ribonucleoprotein H3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
UniGene:Hs.643472 HGNC:HGNC:5043 ChiTaRS:HNRNPH3 EMBL:AC016395
EMBL:AK295316 IPI:IPI00908651 SMR:B4DHY1 STRING:B4DHY1
Ensembl:ENST00000441000 UCSC:uc010qiv.2 Uniprot:B4DHY1
Length = 238
Score = 165 (63.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 91 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 148
Query: 240 TIGSRYVELF-PSTP 253
+ RY+ELF STP
Sbjct: 149 NMQHRYIELFLNSTP 163
Score = 130 (50.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 89 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 148
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 149 NMQHRYIELF 158
Score = 70 (29.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 61 VRLRGLPFNCTDIDICKFFAG 81
VRLRGLPF C+ +I +FF G
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQG 38
>UNIPROTKB|D6R9T0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964846
ProteinModelPortal:D6R9T0 SMR:D6R9T0 Ensembl:ENST00000510431
HOGENOM:HOG000134241 ArrayExpress:D6R9T0 Bgee:D6R9T0 Uniprot:D6R9T0
Length = 162
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 70 (29.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 178 LKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHI 208
+++RGLPF K EIVQFF K + +E K+ +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGILKSLRAVELKLEL 147
>UNIPROTKB|D6RDU3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00968132
ProteinModelPortal:D6RDU3 SMR:D6RDU3 Ensembl:ENST00000506721
ArrayExpress:D6RDU3 Bgee:D6RDU3 Uniprot:D6RDU3
Length = 171
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 70 (29.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 178 LKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHI 208
+++RGLPF K EIVQFF K + +E K+ +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGILKSLRAVELKLEL 147
>UNIPROTKB|D6RIH9 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00966018
ProteinModelPortal:D6RIH9 SMR:D6RIH9 Ensembl:ENST00000510678
ArrayExpress:D6RIH9 Bgee:D6RIH9 Uniprot:D6RIH9
Length = 184
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 70 (29.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 178 LKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHI 208
+++RGLPF K EIVQFF K + +E K+ +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGILKSLRAVELKLEL 147
>UNIPROTKB|D6RJ04 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00963924
ProteinModelPortal:D6RJ04 SMR:D6RJ04 Ensembl:ENST00000508103
ArrayExpress:D6RJ04 Bgee:D6RJ04 Uniprot:D6RJ04
Length = 172
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 70 (29.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 178 LKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHI 208
+++RGLPF K EIVQFF K + +E K+ +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGILKSLRAVELKLEL 147
>FB|FBgn0259139 [details] [associations]
symbol:glo "glorund" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006417
"regulation of translation" evidence=IMP;NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046427 "positive regulation of JAK-STAT cascade"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0043234
"protein complex" evidence=IPI] [GO:0060810 "intracellular mRNA
localization involved in pattern specification process"
evidence=IMP] [GO:0007311 "maternal specification of dorsal/ventral
axis, oocyte, germ-line encoded" evidence=IMP] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0043234 GO:GO:0006417 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0042060 GO:GO:0046427
GO:GO:0051276 GO:GO:0045451 GO:GO:0007311
GeneTree:ENSGT00620000087828 KO:K12898 FlyBase:FBgn0259139
UniGene:Dm.4997 GeneID:41431 KEGG:dme:Dmel_CG6946 CTD:41431
GenomeRNAi:41431 NextBio:823816 EMBL:AY089465 RefSeq:NP_650120.1
RefSeq:NP_731639.1 SMR:Q9VGH5 IntAct:Q9VGH5 MINT:MINT-293245
STRING:Q9VGH5 EnsemblMetazoa:FBtr0089917 EnsemblMetazoa:FBtr0089919
UCSC:CG6946-RA InParanoid:Q9VGH5 OMA:NFGPIGG Uniprot:Q9VGH5
Length = 586
Score = 172 (65.6 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 46 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 106 VEEARKLNKASMGHRYIEVFTATPKEAKEA 135
Score = 172 (65.6 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 49/147 (33%), Positives = 80/147 (54%)
Query: 117 DRQNMGRRYVEVFRCKRQDYYNA-VASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
D +N G YVEV ++D A ++ + Y F +P AK K T
Sbjct: 89 DGKNTGEAYVEV--ASQEDVEEARKLNKASMGHRYIEVFTATP--KEAKEAMRKISGHGT 144
Query: 176 E-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSVEEAKR 232
++K+RGLP++V + +I +FF I D+ I D G+ATGEA+V+F S ++ ++
Sbjct: 145 AFVVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQ 204
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRA 259
A+ +++ IG RY+E+F S+ E +RA
Sbjct: 205 ALGRNREKIGHRYIEIFRSSIAEMKRA 231
Score = 159 (61.0 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-VD---VLLV-NKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP+ T+ I +FF+GLDI D +L V ++ GR +GEAFV F E AL
Sbjct: 147 VVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQAL 206
Query: 115 QRDRQNMGRRYVEVFR 130
R+R+ +G RY+E+FR
Sbjct: 207 GRNREKIGHRYIEIFR 222
Score = 112 (44.5 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A VE A
Sbjct: 51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEAR 110
Query: 115 QRDRQNMGRRYVEVF 129
+ ++ +MG RY+EVF
Sbjct: 111 KLNKASMGHRYIEVF 125
Score = 99 (39.9 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 156 GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
G+ P R ND +E+ I MRGLP++ ++++ +FF+ + +I+ +
Sbjct: 465 GNFGPIGGGRGND---IEYYTI-HMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHS 520
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
T +AY F + E+++ AM + + +GSRY+ELF
Sbjct: 521 GTADAY--FDTYEDSQVAMKRHREQMGSRYIELF 552
>UNIPROTKB|I3LFQ0 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 EMBL:FP476068
Ensembl:ENSSSCT00000027886 OMA:NDIANXH Uniprot:I3LFQ0
Length = 216
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 169 (64.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 78 KERIGHRYIEIFRSSRSE 95
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 180 MRGLPFSVKKSEI 192
MRGLPF +++I
Sbjct: 199 MRGLPFRATENDI 211
>UNIPROTKB|D6RIT2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
HOGENOM:HOG000134241 IPI:IPI00966932 ProteinModelPortal:D6RIT2
SMR:D6RIT2 Ensembl:ENST00000503105 ArrayExpress:D6RIT2 Bgee:D6RIT2
Uniprot:D6RIT2
Length = 164
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 67 (28.6 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 178 LKMRGLPFSVKKSEIVQFF 196
+++RGLPF K EIVQFF
Sbjct: 113 VRLRGLPFGCSKEEIVQFF 131
>UNIPROTKB|D6RAM1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967835
ProteinModelPortal:D6RAM1 SMR:D6RAM1 Ensembl:ENST00000515158
ArrayExpress:D6RAM1 Bgee:D6RAM1 Uniprot:D6RAM1
Length = 130
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
Score = 61 (26.5 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 178 LKMRGLPFSVKKSEIVQF 195
+++RGLPF K EIVQF
Sbjct: 113 VRLRGLPFGCSKEEIVQF 130
>UNIPROTKB|I3L5T6 [details] [associations]
symbol:I3L5T6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU633293
Ensembl:ENSSSCT00000028833 Uniprot:I3L5T6
Length = 413
Score = 146 (56.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
++GL F K +I+QFF +I+ I + +GK TGEA+V+F S E A++A+ K
Sbjct: 114 LQGLLFGCTKEKIIQFFSGLEIMPIWITLPMDLEGKITGEAFVQFTSQELAEKALGDRKE 173
Query: 240 TIGSRYVELFPSTPDEAR 257
IG RY+E+F S+ +E R
Sbjct: 174 RIGHRYIEVFKSSWEEVR 191
Score = 131 (51.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GL F CT I +FF+GL+I+ + L ++ G+ +GEAFV F E AL
Sbjct: 112 VWLQGLLFGCTKEKIIQFFSGLEIMPIWITLPMDLEGKITGEAFVQFTSQELAEKALGDR 171
Query: 118 RQNMGRRYVEVFR 130
++ +G RY+EVF+
Sbjct: 172 KERIGHRYIEVFK 184
Score = 91 (37.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI------VDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
VV+L G+P++C+ D+ F + I + + + G+ + FV V+ A
Sbjct: 12 VVKLCGVPWSCSFEDVQNFLSHCTIRGGAAGIHFICTREGGQ--NDIFVELGSEDDVKMA 69
Query: 114 LQRDRQNMGRRYVEVFRCKRQD 135
L+++R +MG +Y EVF+ R +
Sbjct: 70 LKKERGSMGHQYTEVFKSHRTE 91
Score = 69 (29.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 28/101 (27%), Positives = 45/101 (44%)
Query: 165 RYNDKD-QMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + +++T + +RGL +++I FF + ++H PDG+ E
Sbjct: 274 RYGDGEFTVQNTTGHCIHLRGL---YTENDIYSFFSSLNPV--RVHTGIGPDGRVISE-- 326
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTPDEARRAES 261
F EE A+ K + Y+ELF ST + A S
Sbjct: 327 --FAIHEEDMAAISKHRANKQQSYMELFLNSTTGASNEAYS 365
>UNIPROTKB|E5RGH4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00982782
ProteinModelPortal:E5RGH4 SMR:E5RGH4 Ensembl:ENST00000521790
ArrayExpress:E5RGH4 Bgee:E5RGH4 Uniprot:E5RGH4
Length = 100
Score = 141 (54.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 36 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 95
Query: 238 KMTIG 242
K IG
Sbjct: 96 KERIG 100
Score = 134 (52.2 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 36 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 95
Query: 118 RQNMG 122
++ +G
Sbjct: 96 KERIG 100
Score = 44 (20.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 121 MGRRYVEVFR 130
MG RYVEVF+
Sbjct: 1 MGHRYVEVFK 10
>UNIPROTKB|E5RI26 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 IPI:IPI00889667
ProteinModelPortal:E5RI26 SMR:E5RI26 Ensembl:ENST00000522756
ArrayExpress:E5RI26 Bgee:E5RI26 Uniprot:E5RI26
Length = 94
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 9 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 68
Query: 117 DRQNMGRRYVEVFRCKRQDY 136
+ +MG RY+EV++ +D+
Sbjct: 69 HKHHMGTRYIEVYKATGEDF 88
Score = 128 (50.1 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 4 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 63
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 64 LALQRHKHHMGTRYIEVYKATGED 87
>ZFIN|ZDB-GENE-030131-6428 [details] [associations]
symbol:zgc:56148 "zgc:56148" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6428 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087828 EMBL:BX321920
IPI:IPI00491398 Ensembl:ENSDART00000111912 ArrayExpress:E7F6E2
Bgee:E7F6E2 Uniprot:E7F6E2
Length = 665
Score = 177 (67.4 bits), Expect = 9.9e-12, P = 9.9e-12
Identities = 54/201 (26%), Positives = 101/201 (50%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++L G+PF+ T ++ FFAGL + D+L L N G FSG + V F L+RDRQ
Sbjct: 158 LKLTGMPFSATKDNVHNFFAGLKVDDILFLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQ 217
Query: 120 NMGRRYVEVFRCKRQDYYNA----VASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
MG RY+++ RC +++ VA+++ + SP R++ + + E+
Sbjct: 218 YMGSRYIQITRCTEEEWLKEGGLIVAADMRKRTPVERVRSRSPISYRSRSRSPSHE-EYC 276
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI-ACRPDGKATGEAYVEFVSVEEAKRAM 234
+ LP V+K ++ F + + +D+I I + + D K+ A V F S+ + +
Sbjct: 277 --IMFENLPPLVEKRDVRVFLQPVALKDDQIIIFSSKKDDKSKS-AVVVFRSLTDYCAGL 333
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
+K + ++ V + P + ++
Sbjct: 334 AHNKEMMYNKVVYVSPISKEK 354
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 161 SRAKRYNDKDQMEHTEI-LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
S A+R D D E E+ LK+ G+PFS K + FF K+ D I P G +G
Sbjct: 140 SEARRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFAGLKV--DDILFLKNPRGMFSGN 197
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ V F + E+A + +D+ +GSRY+++ T +E
Sbjct: 198 SMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEE 233
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 38/144 (26%), Positives = 64/144 (44%)
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNY 146
++ +K S A VVF L +++ M + V V ++ + S ++
Sbjct: 306 IIFSSKKDDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKMVTMLESSIDA 365
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
G + S S+++R Q+ L +R LPF V+K EI+ FF Y + ED++
Sbjct: 366 RG-EEKGSRRSAEASQSQRNTPDSQLR---CLYVRNLPFDVRKVEIMDFFHGYALTEDRV 421
Query: 207 HIACRPDGKATGEAYVEFVSVEEA 230
+ G GEA V F + +EA
Sbjct: 422 ILLRDERGAGLGEALVIFQTEKEA 445
>UNIPROTKB|H0YBD7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YBD7 Ensembl:ENST00000523921 Bgee:H0YBD7 Uniprot:H0YBD7
Length = 195
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 107 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 164
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 165 NMQHRYVELF 174
Score = 135 (52.6 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 42/128 (32%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G G +DGY GS R + N F S V
Sbjct: 52 GGYGGYDDYNGYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVH 106
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM
Sbjct: 107 MRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANM 166
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 167 QHRYVELF 174
>UNIPROTKB|H0YBG7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 PRIDE:H0YBG7
Ensembl:ENST00000519033 Bgee:H0YBG7 Uniprot:H0YBG7
Length = 185
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 49 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 106
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 107 NMQHRYVELF 116
Score = 133 (51.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 40/118 (33%), Positives = 55/118 (46%)
Query: 13 GVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVRLRGLPFNCTD 72
G +DGY GS R + N F S V +RGLP+ T+
Sbjct: 4 GYNDGYGFGSDRFGR-DLNYCF----SGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATE 58
Query: 73 IDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
DI FF+ L+ V V + + +GR +GEA V FA A+ +D+ NM RYVE+F
Sbjct: 59 NDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 116
>UNIPROTKB|F5GZT4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00983613
ProteinModelPortal:F5GZT4 SMR:F5GZT4 PRIDE:F5GZT4
Ensembl:ENST00000511300 UCSC:uc011dgn.2 ArrayExpress:F5GZT4
Bgee:F5GZT4 Uniprot:F5GZT4
Length = 159
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK
Sbjct: 23 MRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 80
Query: 240 TIGSRYVELF 249
+ RYVELF
Sbjct: 81 NMQHRYVELF 90
Score = 131 (51.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+
Sbjct: 21 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 80
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 81 NMQHRYVELF 90
>UNIPROTKB|G3MYE8 [details] [associations]
symbol:G3MYE8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02039421 Ensembl:ENSBTAT00000065600 OMA:EVPRRIM
Uniprot:G3MYE8
Length = 248
Score = 166 (63.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 39/78 (50%), Positives = 49/78 (62%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK
Sbjct: 101 MRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 158
Query: 240 TIGSRYVELF-PSTPDEA 256
+ RY+ELF STP A
Sbjct: 159 NMQHRYIELFLNSTPGGA 176
Score = 130 (50.8 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 99 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 158
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 159 NMQHRYIELF 168
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 176 (67.0 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 56/194 (28%), Positives = 94/194 (48%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ ALQ +R+
Sbjct: 297 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCNRE 356
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
MG RY+EVFR K A A N + G + +++ + + L
Sbjct: 357 YMGGRYIEVFREK--SIPTAKAPPKNSTKAWQGRTLGE--------HEEEEDLADSGRLF 406
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
+R LP++ + ++ + F Y + + + K G A+V F+ E A +A + D
Sbjct: 407 VRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 466
Query: 239 MTIGSRYVELFPST 252
R + + PST
Sbjct: 467 QVFQGRMLHVLPST 480
>UNIPROTKB|E7EQJ0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00977852
ProteinModelPortal:E7EQJ0 SMR:E7EQJ0 Ensembl:ENST00000521116
ArrayExpress:E7EQJ0 Bgee:E7EQJ0 Uniprot:E7EQJ0
Length = 115
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 72 KKDRETMGHRYVEVFKS 88
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFK 87
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 172 (65.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 61/244 (25%), Positives = 111/244 (45%)
Query: 13 GVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVRLRGLPFNCTD 72
G+++ + +K++R +P + V+LRG P N T+
Sbjct: 253 GITENIDTHTKKRRKSKPQE----AEQETPAEKQKNQVSSAEASTPHTVKLRGAPLNVTE 308
Query: 73 IDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
I +FF+ L + + + N G+ +G FV +V+ AL+R ++ +G +YVEV RC
Sbjct: 309 QKIREFFSPLKPLAIRMGKNTQGKSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRC 368
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-MEHTEILKMRGLPFSVKKS 190
+ NA V + D+ P R KR +++++ + + L +R LPF+ +
Sbjct: 369 E-----NAPKETVTAKT--DDQ-----PWQRMKRDDEEEEDLSESGRLFVRNLPFTSTEE 416
Query: 191 EIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248
++ + F Y + + IH R K G A++ ++ E A +A + D R + L
Sbjct: 417 DLEKIFSKYGPLSE-IHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHL 475
Query: 249 FPST 252
PST
Sbjct: 476 LPST 479
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 169 (64.5 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 55/195 (28%), Positives = 96/195 (49%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F +++ AL+ +R+
Sbjct: 299 VKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNAHGNKTGYIFVDFRSEEEIKQALKCNRE 358
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-MEHTEIL 178
MG RY+E+FR K N ++ G N P R N++++ + + L
Sbjct: 359 YMGGRYIEIFREK-----NVPTTK----GPLKNS--AKPWQGRTLGENEEEEDLADSGRL 407
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D 237
+R LP++ + ++ + F + + + + K G A+V F+ E A RA + D
Sbjct: 408 FIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVD 467
Query: 238 KMTIGSRYVELFPST 252
R + + PST
Sbjct: 468 GQVFQGRMLHVLPST 482
>UNIPROTKB|H0YAQ2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
Ensembl:ENST00000519958 Bgee:H0YAQ2 Uniprot:H0YAQ2
Length = 131
Score = 97 (39.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
SGEAFV +V+ AL++DR+ MG RYVEVF+
Sbjct: 1 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFK 34
Score = 94 (38.1 bits), Expect = 0.00086, P = 0.00086
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 217 TGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
+GEA+VE S +E K A+ KD+ T+G RYVE+F S
Sbjct: 1 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKS 35
Score = 70 (29.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 178 LKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHI 208
+++RGLPF K EIVQFF K + +E K+ +
Sbjct: 60 VRLRGLPFGCSKEEIVQFFSGILKSLRAVELKLEL 94
>UNIPROTKB|F1P8D4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:AAEX03018089 Ensembl:ENSCAFT00000000519 OMA:THEDAGA
Uniprot:F1P8D4
Length = 193
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 35/88 (39%), Positives = 48/88 (54%)
Query: 165 RYNDK-DQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D + T + MRGLP+ +++I FF + ++HI P G+ GEA
Sbjct: 74 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYIFFSPLNPV--RVHIEIGPGGRVAGEAD 131
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 132 VEFATHEDAGAAMSKDKANMQHRYVELF 159
Score = 134 (52.2 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 43/128 (33%), Positives = 57/128 (44%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSAXXXXXXXXXXXXXXXXXXXVVR 62
G G GG +DGY GS R + N Y S V
Sbjct: 37 GGYGGYDDYGGYNDGYGFGSDRFGR-DLN-YCC---SGMSDHRYGDGGSSFQSTTGHCVH 91
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+RGLP+ T+ DI FF+ L+ V V + + GR +GEA V FA A+ +D+ NM
Sbjct: 92 MRGLPYRATENDIYIFFSPLNPVRVHIEIGPGGRVAGEADVEFATHEDAGAAMSKDKANM 151
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 152 QHRYVELF 159
>UNIPROTKB|D6RDL0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HOGENOM:HOG000220896 HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964237
ProteinModelPortal:D6RDL0 SMR:D6RDL0 Ensembl:ENST00000515714
ArrayExpress:D6RDL0 Bgee:D6RDL0 Uniprot:D6RDL0
Length = 84
Score = 142 (55.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVE 247
KD+ T+G RYVE
Sbjct: 72 KKDRETMGHRYVE 84
Score = 132 (51.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVE 127
++DR+ MG RYVE
Sbjct: 72 KKDRETMGHRYVE 84
>WB|WBGene00022253 [details] [associations]
symbol:hrpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 EMBL:FO081731 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K12898 RefSeq:NP_741422.1
ProteinModelPortal:Q8MXR2 SMR:Q8MXR2 DIP:DIP-24945N IntAct:Q8MXR2
MINT:MINT-1106723 STRING:Q8MXR2 PaxDb:Q8MXR2
EnsemblMetazoa:Y73B6BL.33 GeneID:177398 KEGG:cel:CELE_Y73B6BL.33
UCSC:Y73B6BL.33 CTD:177398 WormBase:Y73B6BL.33 HOGENOM:HOG000017787
InParanoid:Q8MXR2 OMA:QRMGRRY NextBio:896644 Uniprot:Q8MXR2
Length = 610
Score = 162 (62.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
+RLRGLPFN T+ DI +FFAGL I V V GR +GEA+V F + A++ DR+
Sbjct: 66 IRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKAMENDRKE 125
Query: 121 MGRRYVEVF 129
+ RY+EVF
Sbjct: 126 ISNRYIEVF 134
Score = 157 (60.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ +++RGLPF+ + +I +FF I +++ C G+ GEAYVEF + EEA +AM
Sbjct: 63 SQYIRLRGLPFNATEKDIHEFFAGLTI--ERVKFVCTT-GRPNGEAYVEFKNTEEAGKAM 119
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
D+ I +RY+E+F DEA
Sbjct: 120 ENDRKEISNRYIEVFTVEADEA 141
Score = 139 (54.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI--VDVLLVNKNG---RFSGEAFVVFAGPIQVEFAL 114
V+RLRG+P++C + D+ KFF GL+ ++++ G R SGEAFV F E A+
Sbjct: 158 VIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAM 217
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNA 139
+ ++MG RYVEVF ++ A
Sbjct: 218 DYNNRHMGSRYVEVFMSSMVEFNRA 242
Score = 135 (52.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 48/163 (29%), Positives = 83/163 (50%)
Query: 104 FAG-PIQ-VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASE-VNYEGIYDNDFHGSPPP 160
FAG I+ V+F R N G YVE F+ ++ A+ ++ Y F
Sbjct: 84 FAGLTIERVKFVCTTGRPN-GEAYVE-FK-NTEEAGKAMENDRKEISNRYIEVFTVEADE 140
Query: 161 SRAKRYNDKDQM-EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR--PDGKAT 217
+ + D D E ++++RG+P+S K+ ++ +FF+ + +I I P + +
Sbjct: 141 AEFEFRPDPDSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPS 200
Query: 218 GEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
GEA+V F + + A++AM + +GSRYVE+F S+ E RA+
Sbjct: 201 GEAFVRFTTQDAAEKAMDYNNRHMGSRYVEVFMSSMVEFNRAK 243
Score = 131 (51.2 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP++ D I FF+ L V + +N+ GR SG+A F ++ AL R+ Q
Sbjct: 327 VYMRGLPYDADDHAIAAFFSPLRCHSVKIGINETGRPSGDAIAEFDNYNDLQVALSRNNQ 386
Query: 120 NMGRRYVEVF 129
MGRRYVE+F
Sbjct: 387 RMGRRYVELF 396
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 164 (62.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 54/194 (27%), Positives = 93/194 (47%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ AL+ +R+
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNRE 355
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
MG RY+EVFR K N ++ G N + ++D E +
Sbjct: 356 YMGGRYIEVFREK-----NVPTTK----GAPKNTTKSWQGRILGENEEEEDLAESGRLF- 405
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
+R LP++ + ++ + F Y + + + K G A++ F+ E A +A + D
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDG 465
Query: 239 MTIGSRYVELFPST 252
R + + PST
Sbjct: 466 QVFQGRMLHVLPST 479
>UNIPROTKB|B9ZVT1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010834 HOGENOM:HOG000231575
HGNC:HGNC:32310 IPI:IPI00217626 ProteinModelPortal:B9ZVT1
SMR:B9ZVT1 PRIDE:B9ZVT1 Ensembl:ENST00000517700 ArrayExpress:B9ZVT1
Bgee:B9ZVT1 Uniprot:B9ZVT1
Length = 881
Score = 154 (59.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 46/175 (26%), Positives = 77/175 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 51/202 (25%), Positives = 94/202 (46%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+ R M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 218
Query: 122 GRRYVEVFRCKRQDYY----NAVA-------SEVNY--EGIYDNDFHGSPPPSRAKRYND 168
G R++EV + Q + NAV SE + GI D F +R
Sbjct: 219 GSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRS 278
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + + ++ L S+ + ++ FF+ + +++I + + + T A+V F +++
Sbjct: 279 RSPLGF--YVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLK 335
Query: 229 EAKRAMCKDKMTIGSRYVELFP 250
+ A+ K + R V + P
Sbjct: 336 DYNTALSLHKTVLQYRPVHIDP 357
Score = 115 (45.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+ KD
Sbjct: 807 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI-KD 865
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 866 LNDRPVGPRKVKL 878
Score = 95 (38.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 29/126 (23%), Positives = 58/126 (46%)
Query: 132 KRQDYYNAVASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKK 189
K + + S +N + G + N HG+ P + + ++ L +RGLP+ V +
Sbjct: 114 KEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNE 168
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
++ FF + D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 169 DDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 226
Query: 250 PSTPDE 255
+ +
Sbjct: 227 QGSEQQ 232
Score = 94 (38.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTI 83
>RGD|1310858 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 CTD:2926 eggNOG:NOG319259
HOGENOM:HOG000220896 OrthoDB:EOG4XPQGW IPI:IPI00364208
EMBL:BC103654 RefSeq:NP_001094360.1 UniGene:Rn.66912 GeneID:305256
KEGG:rno:305256 UCSC:RGD:1310858 InParanoid:Q3SYP9 NextBio:654276
ArrayExpress:Q3SYP9 Genevestigator:Q3SYP9 Uniprot:Q3SYP9
Length = 142
Score = 137 (53.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD+
Sbjct: 67 MRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 124
Query: 240 TIGSRYVELF 249
+ RY+ELF
Sbjct: 125 HVQHRYIELF 134
Score = 107 (42.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF DI FFA L V + + + +G+ +GEA V F A+ +DR
Sbjct: 65 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRS 124
Query: 120 NMGRRYVEVF 129
++ RY+E+F
Sbjct: 125 HVQHRYIELF 134
>UNIPROTKB|F1RY40 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:CU633952 RefSeq:XP_003125614.1
UniGene:Ssc.32661 Ensembl:ENSSSCT00000006702 GeneID:100514101
KEGG:ssc:100514101 Uniprot:F1RY40
Length = 986
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 53/202 (26%), Positives = 94/202 (46%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+ R M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFM 218
Query: 122 GRRYVEVFRCKRQDYY----NAVASE---VNYE------GIYDNDFHGSPPPSRAKRYND 168
G R++EV + Q + NA+ + + E GI D F +R
Sbjct: 219 GSRFIEVMQGSEQQWIEFGGNAMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPRRTRS 278
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + + ++ L S+ K ++ FF+D + ++I + D + T A+V F +++
Sbjct: 279 RSPLGF--YVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKTLK 335
Query: 229 EAKRAMCKDKMTIGSRYVELFP 250
+ A+ K + R V + P
Sbjct: 336 DYNTALGLHKTVLQYRPVHIDP 357
Score = 125 (49.1 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 43/175 (24%), Positives = 74/175 (42%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIEC---YEKKRPASIEKEKLGHISQKYSQEGYSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKA 457
Score = 114 (45.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF Y++I D + I G TGEA V ++ EA A+ KD
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI-KD 970
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 971 LNDRPVGPRKVKL 983
Score = 95 (38.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 33/101 (32%), Positives = 45/101 (44%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D V+ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEVGEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP 160
+ VE+F + + + E+ D GS P
Sbjct: 63 FIKDSSVELFLSSKAEMQKTI--EMKRTDRMGRDRPGSGAP 101
>UNIPROTKB|Q8IXT5 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG299235 EMBL:AC010834 HOGENOM:HOG000231575
HOVERGEN:HBG057691 OMA:EHFRRPP OrthoDB:EOG4NKBVV IPI:IPI00871780
RefSeq:NP_976324.2 UniGene:Hs.606916 HSSP:Q9NTZ6
ProteinModelPortal:Q8IXT5 SMR:Q8IXT5 IntAct:Q8IXT5 STRING:Q8IXT5
PhosphoSite:Q8IXT5 DMDM:215273872 PaxDb:Q8IXT5 PRIDE:Q8IXT5
Ensembl:ENST00000399300 GeneID:389677 KEGG:hsa:389677
UCSC:uc003yfz.3 CTD:389677 GeneCards:GC08M094813 H-InvDB:HIX0025665
HGNC:HGNC:32310 HPA:HPA024398 neXtProt:NX_Q8IXT5
PharmGKB:PA142671098 GenomeRNAi:389677 NextBio:103029
ArrayExpress:Q8IXT5 Bgee:Q8IXT5 CleanEx:HS_RBM12B
Genevestigator:Q8IXT5 Uniprot:Q8IXT5
Length = 1001
Score = 154 (59.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 46/175 (26%), Positives = 77/175 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 51/202 (25%), Positives = 94/202 (46%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+ R M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 218
Query: 122 GRRYVEVFRCKRQDYY----NAVA-------SEVNY--EGIYDNDFHGSPPPSRAKRYND 168
G R++EV + Q + NAV SE + GI D F +R
Sbjct: 219 GSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRS 278
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + + ++ L S+ + ++ FF+ + +++I + + + T A+V F +++
Sbjct: 279 RSPLGF--YVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLK 335
Query: 229 EAKRAMCKDKMTIGSRYVELFP 250
+ A+ K + R V + P
Sbjct: 336 DYNTALSLHKTVLQYRPVHIDP 357
Score = 115 (45.5 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+ KD
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI-KD 985
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 986 LNDRPVGPRKVKL 998
Score = 95 (38.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/126 (23%), Positives = 58/126 (46%)
Query: 132 KRQDYYNAVASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKK 189
K + + S +N + G + N HG+ P + + ++ L +RGLP+ V +
Sbjct: 114 KEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNE 168
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
++ FF + D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 169 DDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 226
Query: 250 PSTPDE 255
+ +
Sbjct: 227 QGSEQQ 232
Score = 94 (38.1 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTI 83
>UNIPROTKB|E1B7G5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:DAAA02039473 IPI:IPI00687016
RefSeq:XP_002692866.1 RefSeq:XP_881008.3 Ensembl:ENSBTAT00000017837
GeneID:506017 KEGG:bta:506017 NextBio:20867413 Uniprot:E1B7G5
Length = 984
Score = 145 (56.1 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 51/205 (24%), Positives = 95/205 (46%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+ R M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFM 218
Query: 122 GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS---R--AKRYNDKDQMEHTE 176
G R++EV + + + + + + I +PP R KR + K
Sbjct: 219 GSRFIEVMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPRRTCS 278
Query: 177 ------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ ++ L S+ K ++ FF+D + ++I + D + T A+V F ++++
Sbjct: 279 RSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKTLKDY 337
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDE 255
A+ K + R V + P + ++
Sbjct: 338 NTALGLHKTVLQYRPVYIDPVSREQ 362
Score = 115 (45.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+ KD
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI-KD 968
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 969 LNDRPVGPRKVKL 981
Score = 93 (37.8 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAVSRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTI 83
Score = 93 (37.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 31/126 (24%), Positives = 58/126 (46%)
Query: 125 YVEVFRCKRQDYYNAVASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRG 182
+VE K + + S +N + G + N HG P + + ++ L +RG
Sbjct: 109 FVEAI--KEEGSNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPY-----LFLRG 161
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG 242
LP+ V + ++ FF + D + DG+ G+A V+F S +A + + +G
Sbjct: 162 LPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMG 219
Query: 243 SRYVEL 248
SR++E+
Sbjct: 220 SRFIEV 225
>UNIPROTKB|E2RRS5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:AAEX03015951 RefSeq:XP_544177.3
Ensembl:ENSCAFT00000014490 GeneID:487048 KEGG:cfa:487048
NextBio:20860720 Uniprot:E2RRS5
Length = 994
Score = 159 (61.0 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 55/203 (27%), Positives = 94/203 (46%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+ R M
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFM 218
Query: 122 GRRYVEVFRCKRQDYY----NAVASEVNY----------EGIYDNDFHGSPPPSRAKRYN 167
G R++EV + Q + NAV EV+ GI D F +R
Sbjct: 219 GSRFIEVMQGSEQQWIEFGGNAV-KEVDIPMRTEEHSPPRGINDRHFRKRSHSKSPRRTR 277
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + + ++ L S+ K ++ FF+D + ++I + D + T A+V F ++
Sbjct: 278 SRSPLGF--YVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKTL 334
Query: 228 EEAKRAMCKDKMTIGSRYVELFP 250
++ A+ K + R V + P
Sbjct: 335 KDYNSALGLHKTVLQYRPVHIDP 357
Score = 113 (44.8 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF Y+I+ D + I G TGEA V ++ EA A+ KD
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI-KD 978
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 979 LNDRPVGPRKVKL 991
Score = 94 (38.1 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTI 83
Score = 93 (37.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/133 (23%), Positives = 60/133 (45%)
Query: 125 YVEVFRCKRQDYYNAVASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRG 182
+VE K + + S +N + G + N HG P + + ++ L +RG
Sbjct: 109 FVEAI--KEEASNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPY-----LFLRG 161
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG 242
LP+ V + ++ FF + D + DG+ G+A V+F S +A + + +G
Sbjct: 162 LPYLVNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMG 219
Query: 243 SRYVELFPSTPDE 255
SR++E+ + +
Sbjct: 220 SRFIEVMQGSEQQ 232
>UNIPROTKB|F1NVJ4 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AADN02024868 IPI:IPI00599613 Ensembl:ENSGALT00000025676
ArrayExpress:F1NVJ4 Uniprot:F1NVJ4
Length = 415
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 55/180 (30%), Positives = 83/180 (46%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ LR L N D+ +FF LDI + +L K+ R + +AFV+ + AL+
Sbjct: 26 IHLRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLKNERDYQAALECH 85
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R+ + R V +F R+ + S YE + G P + +K E
Sbjct: 86 RKVLLNRSVYIFPISRKSMLKMLDS---YERKRSQE-RGHP----GQAITEKSYREGHSG 137
Query: 178 LKM----RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
LKM R PF V K E+ +FF+ + I ED I++ G GEA V+F S E+A +A
Sbjct: 138 LKMCAYVRNFPFDVTKVEVQRFFERFDIDEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 197
>FB|FBgn0035235 [details] [associations]
symbol:CG7879 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:AE014296
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GeneTree:ENSGT00620000087828 FlyBase:FBgn0035235 RefSeq:NP_647626.1
RefSeq:NP_728631.1 UniGene:Dm.21365 SMR:Q9W0D6 IntAct:Q9W0D6
MINT:MINT-286284 EnsemblMetazoa:FBtr0072826
EnsemblMetazoa:FBtr0072827 GeneID:38184 KEGG:dme:Dmel_CG7879
UCSC:CG7879-RA InParanoid:Q9W0D6 OMA:RAEMQKV GenomeRNAi:38184
NextBio:807399 Uniprot:Q9W0D6
Length = 985
Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
Identities = 49/214 (22%), Positives = 96/214 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI----VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+R+ G+ N + DI K+F G+ I + +++VN G +G A+V F+ + A+QR
Sbjct: 356 IRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMMVN--GSRTGVAYVEFSRVSSAQKAVQR 413
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV--ASEVNYEGIYDNDFH-GSPPPSRAKRYNDKDQME 173
+ R +++ ++ A AS +G + H G R
Sbjct: 414 NNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSRSHGNHNGGDRGERGGGAPVPVPRP 473
Query: 174 HTEILKMRGLPFSVKKSEIVQFFK-DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
T +L + LP + + +I++ F Y +++ I ++ P + A+V F EA
Sbjct: 474 VTNVLYIEDLPQTTTEQDIMKMFSASYTVVD--ILLSPSPKNRRESVAFVLFAREAEADS 531
Query: 233 AMCK-DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
A+ K IG R + + S+ ++ + A+ + R+
Sbjct: 532 ALQDTSKHYIGFRQLRVRSSSEEDMQNAKEKQRR 565
Score = 112 (44.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
++ MR +PF + +I++FF DYK+ D I +GK TG+ V F S EA+ A
Sbjct: 910 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 969
Query: 236 KDKMTIGSRYVEL 248
+ K I +R V L
Sbjct: 970 RRKKQIFNRTVYL 982
Score = 91 (37.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFF-AGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQ- 115
V+ + LP T+ DI K F A +VD+LL KN R S AFV+FA + + ALQ
Sbjct: 477 VLYIEDLPQTTTEQDIMKMFSASYTVVDILLSPSPKNRRES-VAFVLFAREAEADSALQD 535
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNA 139
+ +G R + V +D NA
Sbjct: 536 TSKHYIGFRQLRVRSSSEEDMQNA 559
Score = 83 (34.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++RL+ LP+ DI FF+GL I + V+ G G+AF+ F+ A+ +DR+
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGG-VHIIGGEMGDAFIAFSTDEDARCAMLKDRE 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + R + +
Sbjct: 63 KLMEIQVRLLLSSRAEMQKVI 83
Score = 46 (21.3 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQR--DRQNMGR 123
L N+ + SGE V F+ P + A++ +R+ GR
Sbjct: 733 LFNERNQSSGEFIVEFSDPASCKLAIREFHNRRFRGR 769
>RGD|1593040 [details] [associations]
symbol:LOC679087 "similar to swan" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1593040
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 OrthoDB:EOG4NKBVV CTD:389677
IPI:IPI00765757 RefSeq:XP_001053414.1 RefSeq:XP_232819.3
ProteinModelPortal:D3ZM54 Ensembl:ENSRNOT00000061333 GeneID:313069
KEGG:rno:313069 NextBio:665610 Uniprot:D3ZM54
Length = 843
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 52/206 (25%), Positives = 93/206 (45%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R M
Sbjct: 158 LRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 122 GRRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSRAKRY---NDKDQMEHTE 176
G R++EV + Q + + AS+ + ++ SP RY + + T
Sbjct: 218 GSRFIEVMQGSEQQWIEFGGTASKGG-DTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTR 276
Query: 177 -------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +R L K ++ F+D + D+I + D + T A+V F + ++
Sbjct: 277 SRSPLGFYVHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDD-RRTRYAFVMFKNQKD 335
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ K + R V + P + E
Sbjct: 336 YNTALGLHKTVLQYRPVLIDPISRKE 361
Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 46/177 (25%), Positives = 78/177 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V LR L + D+ F D+ + + + K+ R + AFV+F AL +
Sbjct: 285 VHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+++ + L
Sbjct: 345 TVLQYRPVLIDPISRKEMVKIIEC---YEKKRPESLEEERPGRVSQKYSEEGFPGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQAMKA 458
Score = 103 (41.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 32/140 (22%), Positives = 64/140 (45%)
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYE-GIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
+ +G Y + K ++ Y+ S VN + G + N G+ R ++ +
Sbjct: 99 EASGVGNMYHFIDALKEEERYSGYGSAVNPDAGFHIN---GTGLDLRPRK--TRPLKAEN 153
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
L +RGLP+ V + ++ FF + D + + DG+ G+A V+F S +A +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLK 211
Query: 236 KDKMTIGSRYVELFPSTPDE 255
+ +GSR++E+ + +
Sbjct: 212 CHRSFMGSRFIEVMQGSEQQ 231
Score = 102 (41.0 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM--T 240
LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 774 LPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAAV-KDLSGRP 832
Query: 241 IGSRYVEL 248
+G R V+L
Sbjct: 833 VGPRKVKL 840
Score = 99 (39.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLPF +DI FF GL I D V+ G +GEAF++FA A+ R
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGG-VHVIGGKAGEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF 129
+ VE+F
Sbjct: 63 FIKDSSVELF 72
>MGI|MGI:1924854 [details] [associations]
symbol:Rbm12b2 "RNA binding motif protein 12 B2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1924854 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
HOGENOM:HOG000231575 HOVERGEN:HBG057691 OrthoDB:EOG4NKBVV
EMBL:AK080943 EMBL:AK169895 EMBL:AL772167 EMBL:BC030408
EMBL:BC080741 IPI:IPI00471450 IPI:IPI00828825 RefSeq:NP_945195.1
UniGene:Mm.474129 UniGene:Mm.483494 ProteinModelPortal:Q66JV4
SMR:Q66JV4 STRING:Q66JV4 PhosphoSite:Q66JV4 PRIDE:Q66JV4
Ensembl:ENSMUST00000063839 Ensembl:ENSMUST00000095143 GeneID:77604
KEGG:mmu:77604 UCSC:uc008san.2 CTD:77604 InParanoid:A2AJP4
NextBio:347196 Bgee:Q66JV4 CleanEx:MM_C430048L16RIK
Genevestigator:Q66JV4 Uniprot:Q66JV4
Length = 834
Score = 153 (58.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 48/177 (27%), Positives = 78/177 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 54/211 (25%), Positives = 96/211 (45%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R M
Sbjct: 158 LRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 122 GRRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSRA-------KRYNDKDQM 172
G R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 218 GSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPR 274
Query: 173 EHTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++ L + K ++ F+D + D+I + D + T A+V F +
Sbjct: 275 ARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQ 333
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
++ A+ K + R V + P + E R
Sbjct: 334 KDYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM--T 240
LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 765 LPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAV-KDLSGRP 823
Query: 241 IGSRYVEL 248
+G R V+L
Sbjct: 824 VGPRKVKL 831
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 30/125 (24%), Positives = 59/125 (47%)
Query: 132 KRQDYYNAVASEVNYE-GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKS 190
K ++ Y+ S VN + G + N G+ R ++ + L +RGLP+ V +
Sbjct: 114 KEEESYSGYGSSVNRDAGFHTN---GTGLDLRPRK--TRPLKAENPYLFLRGLPYLVNED 168
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
++ FF + D + + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 169 DVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQ 226
Query: 251 STPDE 255
+ +
Sbjct: 227 GSEQQ 231
Score = 93 (37.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF 129
+ VE+F
Sbjct: 63 FIKDSSVELF 72
Score = 75 (31.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ +R LPF+ T ++ KFFA +V D+ LL + G GEA V F Q A + +
Sbjct: 403 IYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLN 462
Query: 118 RQ 119
RQ
Sbjct: 463 RQ 464
>MGI|MGI:1919647 [details] [associations]
symbol:Rbm12b1 "RNA binding motif protein 12 B1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919647 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL929413 EMBL:AK013872 EMBL:AK031339 EMBL:BC050844
EMBL:BC054081 IPI:IPI00134417 RefSeq:NP_082502.2 UniGene:Mm.430709
UniGene:Mm.490798 ProteinModelPortal:Q80YR9 SMR:Q80YR9
STRING:Q80YR9 PhosphoSite:Q80YR9 PRIDE:Q80YR9
Ensembl:ENSMUST00000050069 Ensembl:ENSMUST00000069128 GeneID:72397
KEGG:mmu:72397 UCSC:uc008sam.1 CTD:72397 HOGENOM:HOG000231575
HOVERGEN:HBG057691 InParanoid:B1AZ74 OMA:EHFRRPP OrthoDB:EOG4NKBVV
NextBio:336186 Bgee:Q80YR9 Genevestigator:Q80YR9 Uniprot:Q80YR9
Length = 836
Score = 153 (58.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 48/177 (27%), Positives = 78/177 (44%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 54/211 (25%), Positives = 96/211 (45%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R M
Sbjct: 158 LRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 122 GRRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSRA-------KRYNDKDQM 172
G R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 218 GSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPR 274
Query: 173 EHTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++ L + K ++ F+D + D+I + D + T A+V F +
Sbjct: 275 ARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQ 333
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
++ A+ K + R V + P + E R
Sbjct: 334 KDYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 107 (42.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A+ KD
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAV-KD 820
Query: 238 KM--TIGSRYVEL 248
+G R V+L
Sbjct: 821 LSGRPVGPRKVKL 833
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 30/125 (24%), Positives = 59/125 (47%)
Query: 132 KRQDYYNAVASEVNYE-GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKS 190
K ++ Y+ S VN + G + N G+ R ++ + L +RGLP+ V +
Sbjct: 114 KEEESYSGYGSSVNRDAGFHTN---GTGLDLRPRK--TRPLKAENPYLFLRGLPYLVNED 168
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
++ FF + D + + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 169 DVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQ 226
Query: 251 STPDE 255
+ +
Sbjct: 227 GSEQQ 231
Score = 93 (37.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF 129
+ VE+F
Sbjct: 63 FIKDSSVELF 72
Score = 75 (31.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ +R LPF+ T ++ KFFA +V D+ LL + G GEA V F Q A + +
Sbjct: 403 IYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLN 462
Query: 118 RQ 119
RQ
Sbjct: 463 RQ 464
>UNIPROTKB|F2Z5W4 [details] [associations]
symbol:LOC100737162 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU468421
Ensembl:ENSSSCT00000011205 Uniprot:F2Z5W4
Length = 133
Score = 126 (49.4 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
++HI DG+ATGEA VEFV+ E+A AM KDK + RY+ELF STP
Sbjct: 9 RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTP 58
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 150 (57.9 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 52/195 (26%), Positives = 91/195 (46%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ AL+ +R
Sbjct: 295 VKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRD 354
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-MEHTEIL 178
MG RY+EVFR K+ +P R N++++ + + L
Sbjct: 355 YMGGRYIEVFREKQAPTARGPPKST------------TPWQGRTLGENEEEEDLADSGRL 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D 237
+R L ++ + ++ + F Y + + + K G A+V F+ E A +A + D
Sbjct: 403 FVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 462
Query: 238 KMTIGSRYVELFPST 252
R + + PST
Sbjct: 463 GQVFQGRMLHVLPST 477
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 31/108 (28%), Positives = 50/108 (46%)
Query: 158 PPPSRAKRYNDKDQMEHTE--ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
P + K Q E T +K+RG PF+V + +++F K + I I G
Sbjct: 273 PQEAAGKVEKPVSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVA--IRIVRNAHGN 330
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
TG +V+ S EE K+A+ ++ +G RY+E+F R +S
Sbjct: 331 KTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKS 378
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 50/195 (25%), Positives = 90/195 (46%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG PFN + + +F L V + N +GR SG +V +VE AL+ D+
Sbjct: 292 VKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKD 351
Query: 120 NMGRRYVEVFRCK--RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
MG RY+EVFR + D +A SE+ + +F K +++ + +
Sbjct: 352 YMGGRYIEVFRANNFKNDRRSAKRSEM------EKNF-----VRELKDDEEEEDVAESGR 400
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
L +R +P++ + ++ + F + + + + K G A+V ++ E A A+ +
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 237 DKMTIGSRYVELFPS 251
D T R + + S
Sbjct: 461 DGHTFQGRVLHVMAS 475
>WB|WBGene00013703 [details] [associations]
symbol:Y106G6D.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL031629 PIR:B87957 PIR:T26417 RefSeq:NP_492671.1
ProteinModelPortal:Q9U304 SMR:Q9U304 DIP:DIP-26480N IntAct:Q9U304
MINT:MINT-1041092 STRING:Q9U304 PaxDb:Q9U304
EnsemblMetazoa:Y106G6D.7 GeneID:172878 KEGG:cel:CELE_Y106G6D.7
UCSC:Y106G6D.7 CTD:172878 WormBase:Y106G6D.7 HOGENOM:HOG000019591
InParanoid:Q9U304 OMA:YEASYPP NextBio:877371 Uniprot:Q9U304
Length = 948
Score = 96 (38.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 30/116 (25%), Positives = 51/116 (43%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++RL+ LP D+ FF GL I D V+ G GE FV F+ A+ +DR
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGA-VHIIGGDEGEVFVGFSSDDDARLAMTKDRL 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVN--YEG-IYDN---DFHGSPPPSRAKRYNDK 169
+ V +F + + + +A+ N Y +Y P P++ + +N +
Sbjct: 63 MIHGAEVRLFLSSKSEQNSVIAARKNNTYTSPVYKEYVPPVPSQPTPAQEQNWNSQ 118
Score = 89 (36.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+L G P V ++V+FF DY+ + I I DG TGE + + E A+RA
Sbjct: 873 VLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQENARRA 929
Score = 85 (35.0 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 157 SPPPSRAKRYNDKDQMEHTE----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
SPP R + + + + EHT+ +++ +PF +K E++++F + K+ K+
Sbjct: 583 SPPRRRRRSRSPRRREEHTDPTRWCVQVTNVPFRMKDEELLEWFSE-KVRPAKLTRTFYS 641
Query: 213 DGKATGEAYVEFVSVEEAKRA-----MCKDKMTIGSRYVE 247
DG A+ EF S KR+ +C + T+ RY++
Sbjct: 642 DGNASDRWVAEFSSESLMKRSFGIRTLCTGR-TLRLRYID 680
>RGD|1308928 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0040019 "positive regulation
of embryonic development" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473973 IPI:IPI00777247 Ensembl:ENSRNOT00000060041
UCSC:RGD:1308928 Uniprot:D3ZUN0
Length = 451
Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ AL+ +R+
Sbjct: 296 VKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRE 355
Query: 120 NMGRRYVEVFRCKR 133
MG RY+EVFR K+
Sbjct: 356 YMGGRYIEVFREKQ 369
Score = 123 (48.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 35/112 (31%), Positives = 54/112 (48%)
Query: 156 GSPPPSRAKRYNDK--DQMEHTE--ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211
GS P A +K Q E T +K+RG PF+V + +++F K + I I
Sbjct: 270 GSLRPQEAAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVA--IRIVRN 327
Query: 212 PDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
G TG +V+ S EE K+A+ ++ +G RY+E+F A R +S
Sbjct: 328 AHGNKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGAPKS 379
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 131 (51.2 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 91 NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIY 150
N G+ +G FV +V+ AL+R ++ +G +YVEV RC+ NA V +
Sbjct: 4 NTQGKSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRCE-----NAPKETVTAKT-- 56
Query: 151 DNDFHGSPPPSRAKRYNDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
D+ P R KR +++++ + + L +R LPF+ + ++ + F Y + + IH
Sbjct: 57 DDQ-----PWQRMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSE-IHFP 110
Query: 210 C-RPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252
R K G A++ ++ E A +A + D R + L PST
Sbjct: 111 IDRLTKKPKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPST 155
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 107 (42.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/103 (30%), Positives = 53/103 (51%)
Query: 159 PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
P + RY+ + +H L + GLPFS K E+ + K + ++D + + GK G
Sbjct: 26 PDFKVFRYSTSLE-KHK--LFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKG 81
Query: 219 EAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAE 260
AYVE+ + +A +A+ K D MTI +++ S P + + E
Sbjct: 82 LAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPE 124
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 47/183 (25%), Positives = 88/183 (48%)
Query: 74 DICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
++ +F A L V + +V N +G +G FV F+ +V AL+ +R+ MG RY+EVFR +
Sbjct: 270 NVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFR-E 328
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAK-RYNDKDQMEHTEILKMRGLPFSVKKS 190
R N ++ + +G+ P R + +++ + + L +R LP++ +
Sbjct: 329 R----NIPVAKAPLK-------NGAKPWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEE 377
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249
++ + F Y + + + K G A+V F+ E A +A + D R + +
Sbjct: 378 DLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 437
Query: 250 PST 252
PST
Sbjct: 438 PST 440
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 108 (43.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
L + GLPFS K E+ + K + ++D I + GK G AYVE+ + +A +A+ K
Sbjct: 501 LFVSGLPFSCTKEELEEICKAHGTVKD-IRLVTNRAGKPKGLAYVEYENESQASQAVLKM 559
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
D MTI +++ S P + + E
Sbjct: 560 DGMTIRENVIKVAISNPPQRKVPE 583
Score = 57 (25.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 83 DIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
D+V+V + N G F G +V F ALQ DRQ++ R + V C
Sbjct: 429 DVVEVRPIFSNRGDFRGYCYVEFREEAAALQALQLDRQSVEGRPMFVSPC 478
>UNIPROTKB|E5RHG1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982580 ProteinModelPortal:E5RHG1
SMR:E5RHG1 Ensembl:ENST00000520560 ArrayExpress:E5RHG1 Bgee:E5RHG1
Uniprot:E5RHG1
Length = 122
Score = 99 (39.9 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
I VELF S+ E ++ R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 94 (38.1 bits), Expect = 0.00029, P = 0.00029
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTI 83
>UNIPROTKB|E5RJW8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00980861 ProteinModelPortal:E5RJW8
SMR:E5RJW8 Ensembl:ENST00000521947 ArrayExpress:E5RJW8 Bgee:E5RJW8
Uniprot:E5RJW8
Length = 82
Score = 98 (39.6 bits), Expect = 0.00010, P = 0.00010
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARR 258
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQK 81
Score = 93 (37.8 bits), Expect = 0.00037, P = 0.00037
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF 129
+ VE+F
Sbjct: 63 FIKDSSVELF 72
>UNIPROTKB|H0YAM1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC021989
HGNC:HGNC:4610 ChiTaRS:GRSF1 PRIDE:H0YAM1 Ensembl:ENST00000506453
Bgee:H0YAM1 Uniprot:H0YAM1
Length = 114
Score = 72 (30.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
G+A + V+ AL++ R MG+RYVEV+ +D
Sbjct: 4 GDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 41
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKD 198
++++RGLP+S + +IV FF D
Sbjct: 61 VVRLRGLPYSCNEKDIVDFFAD 82
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 115 (45.5 bits), Expect = 0.00093, P = 0.00093
Identities = 49/201 (24%), Positives = 84/201 (41%)
Query: 65 GLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRR 124
GLP + +I ++ + V + + +N + AFV F P V ALQ+D Q +G
Sbjct: 180 GLPSSAKGKNIKEWLNPIR-VKAMKIARNEDVAA-AFVTFNRPPDVRRALQKDGQFLGGF 237
Query: 125 YVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYND-KDQMEHTEILKMRGL 183
+ + + + + + V E HG+ SR K ++++ T L +R L
Sbjct: 238 KIGIEKIETPEPEHEVIEE-----------HGASLESRDKEEETVREKILETGRLFLRNL 286
Query: 184 PFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG 242
P++ K+ ++ FK Y + + + + G G A VEFV E A A D
Sbjct: 287 PYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFK 346
Query: 243 SRYVELFPSTPDEARRAESRS 263
R + + P + E S
Sbjct: 347 GRMMHILPGDEKRTKEGEEES 367
Score = 91 (37.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 162 RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT--GE 219
+ K K+Q E T++L +R LPF E+ F+ + ++ I I +P K G
Sbjct: 735 KRKEVKQKEQGECTKLL-VRNLPFEASVKEVETLFETFGAVKT-IRIPKKPGQKQQHRGF 792
Query: 220 AYVEFVSVEEAKRA 233
+V+F+S +EA RA
Sbjct: 793 GFVDFISADEAHRA 806
Score = 72 (30.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 63 LRGLPFNCTDIDICKFFAGL-DIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
++ LP CT+ + KFF I D L K G+F G AFV F AL + Q
Sbjct: 7 VKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSNQT 66
Query: 121 M-GRRYVEVFRCK 132
+ + V C+
Sbjct: 67 FFNSKKLTVEECR 79
>ZFIN|ZDB-GENE-061103-58 [details] [associations]
symbol:zgc:153215 "zgc:153215" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-061103-58 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:BX649484 IPI:IPI00770497 Ensembl:ENSDART00000078297
OMA:GCLVKFA Bgee:F1R8L0 Uniprot:F1R8L0
Length = 523
Score = 92 (37.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 158 PPPSRAKRY--NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
P P K+Y ND + ++ + L ++ K+EI F + I +I G+
Sbjct: 311 PSPGSPKKYCRNDPSPQKEYSVI-VNNLSRNITKTEIKNIFGCHAIQNYRIKHLLNKWGE 369
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
T A++ F + E+ AM + M +G + +E+ T +E S++R
Sbjct: 370 RTSTAFITFDNSEDQASAMKMNGMNVGLKNIEVLSITKEEILDILSKNR 418
Score = 65 (27.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
V+RL+GL DI +FF GL I + V+ G GEAF++F + + A++
Sbjct: 5 VLRLQGLNTEAGSEDIRRFFHGLHIPEGG-VHIIGGEMGEAFIIFKTEREGQLAMR 59
>UNIPROTKB|E5RJ83 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982018 ProteinModelPortal:E5RJ83
SMR:E5RJ83 Ensembl:ENST00000518597 ArrayExpress:E5RJ83 Bgee:E5RJ83
Uniprot:E5RJ83
Length = 143
Score = 99 (39.9 bits), Expect = 0.00063, P = 0.00063
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
I VELF S+ E ++ R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 113 (44.8 bits), Expect = 0.00089, P = 0.00089
Identities = 46/174 (26%), Positives = 81/174 (46%)
Query: 66 LPFNCTDIDICKFFAGL-DIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
LP+ +I FF + ++V V L+VN G+ G FV FA + E ALQ+ + +
Sbjct: 75 LPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLD 134
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG--SPPPSRAKRYNDKDQMEHTEILKM 180
+ + ++ Y ++++ ++D D+ S P +R + +E E+L +
Sbjct: 135 NNKIFLDVANKKATYLPPKYCIDHK-VWDKDYRRLESHPIEEDER--PPNSVE--EVLFV 189
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
L K S+I FF + I + +GK G +VEF S +E K+A+
Sbjct: 190 ANLSPQTKISDIFDFFNCVGEVVS-IRLMVNHEGKHVGYGFVEFASADETKKAL 242
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 246 0.0010 113 3 11 22 0.42 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 148
No. of states in DFA: 583 (62 KB)
Total size of DFA: 177 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.33u 0.07s 20.40t Elapsed: 00:00:03
Total cpu time: 20.38u 0.07s 20.45t Elapsed: 00:00:03
Start: Fri May 10 14:22:18 2013 End: Fri May 10 14:22:21 2013
WARNINGS ISSUED: 1