BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024584
(265 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359476979|ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/265 (87%), Positives = 253/265 (95%), Gaps = 1/265 (0%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYGSRGA+LGSGGVSDGYE+GSKRQRMME NPYFAVSSSASGFQPYGYG GF PP +FPV
Sbjct: 1 MYGSRGAMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPP-TFPV 59
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNCTDIDI KFFAGLDIVDVLLVNK+GRFSGEA+VVFAG +Q +FALQRDRQN
Sbjct: 60 VRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQN 119
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MGRRYVEVFRCK+QDYY+AVASEVNYEGIYDNDFHGSPPPSR+KR++DKDQMEHTEILK+
Sbjct: 120 MGRRYVEVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKL 179
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPFSVKKS+I++FF D+++ +DK+HIACRPDGKATGEAYVEF S EEAK+AM KDKMT
Sbjct: 180 RGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMT 239
Query: 241 IGSRYVELFPSTPDEARRAESRSRQ 265
IGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 240 IGSRYVELFPSTPDEARRAESRSRQ 264
>gi|224084107|ref|XP_002307213.1| predicted protein [Populus trichocarpa]
gi|222856662|gb|EEE94209.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/258 (88%), Positives = 249/258 (96%), Gaps = 1/258 (0%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67
+LGSGGVSDGYEVGSKRQRMME NPYFAVSS ASGFQPYGYGGGF PPP FPVVRLRGLP
Sbjct: 1 MLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGASGFQPYGYGGGFQPPP-FPVVRLRGLP 59
Query: 68 FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
FNC+D++I KFFAGLDIVDVLLVNK+GRF+GEAFVVFAGP+QVEFALQRDRQNMGRRYVE
Sbjct: 60 FNCSDVEILKFFAGLDIVDVLLVNKSGRFTGEAFVVFAGPMQVEFALQRDRQNMGRRYVE 119
Query: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187
VFRCKRQDYYNAVA+EVNYEGIYDND+HGSPPPSRAKR++DKDQME+TEILKMRGLPFS
Sbjct: 120 VFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPSRAKRFSDKDQMEYTEILKMRGLPFSA 179
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
KK+EI++FFKD+K+I+++IHIACRPDGKATGEAYVEF+S EEAKRAM KDKMTIGSRYVE
Sbjct: 180 KKAEIIEFFKDFKLIDERIHIACRPDGKATGEAYVEFISAEEAKRAMSKDKMTIGSRYVE 239
Query: 248 LFPSTPDEARRAESRSRQ 265
LFPST DEARRAESRSRQ
Sbjct: 240 LFPSTQDEARRAESRSRQ 257
>gi|255561415|ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223539109|gb|EEF40705.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 264
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/265 (86%), Positives = 249/265 (93%), Gaps = 1/265 (0%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYGSRGA+LGSGGVSDGYEVGSKR RMME NPYFAVS +SGFQPYGYGGGF P FPV
Sbjct: 1 MYGSRGAMLGSGGVSDGYEVGSKRPRMMESNPYFAVSGGSSGFQPYGYGGGFQSAP-FPV 59
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNCTDIDI KFFAGLDIVDVLLVNKNGRF+GEAFVVFAG +QVEFALQRDRQN
Sbjct: 60 VRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQN 119
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MGRRYVEVFRCKRQDYYNAVA+EVNYEGIYD D+HGSPPPS+AKR++DKDQ+E+TEILKM
Sbjct: 120 MGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKDQLEYTEILKM 179
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPFS KK EI++FFK+++++ED+IHIACRPDGKATGEAYVEF S +EAKRAM KDKMT
Sbjct: 180 RGLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEAKRAMSKDKMT 239
Query: 241 IGSRYVELFPSTPDEARRAESRSRQ 265
IGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 240 IGSRYVELFPSTPDEARRAESRSRQ 264
>gi|356531341|ref|XP_003534236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Glycine max]
Length = 264
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/266 (87%), Positives = 247/266 (92%), Gaps = 3/266 (1%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYG RGA+LGSGGVSDGYEVGSKRQRMME NPYFAVSS +G PYGY GGF PPP FPV
Sbjct: 1 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSS-GTGNLPYGYAGGFQPPP-FPV 58
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNCTDIDI KFFAGL IVDVLLVNK+GRFSGEAFVVFAG +QVEFALQRDRQN
Sbjct: 59 VRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQN 118
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG-SPPPSRAKRYNDKDQMEHTEILK 179
MGRRYVEVFRCK+QDYYNAVA E+NYEGIYDND+HG SPPPSR KR+NDKDQME+TEILK
Sbjct: 119 MGRRYVEVFRCKKQDYYNAVAGEINYEGIYDNDYHGSSPPPSRLKRFNDKDQMEYTEILK 178
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF V KS+IV+FFKD+K+IED++HIACRPDGKATGEAYVEFVS EEAKRAM KDKM
Sbjct: 179 MRGLPFQVTKSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKM 238
Query: 240 TIGSRYVELFPSTPDEARRAESRSRQ 265
TIGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 239 TIGSRYVELFPSTPDEARRAESRSRQ 264
>gi|147834707|emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
Length = 257
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/258 (86%), Positives = 246/258 (95%), Gaps = 1/258 (0%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67
+LGSGGVSDGYE+GSKRQRMME NPYFAVSSSASGFQPYGYG GF PP +FPVVRLRGLP
Sbjct: 1 MLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPP-TFPVVRLRGLP 59
Query: 68 FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
FNCTDIDI KFFAGLDIVDVLLVNK+GRFSGEA+VVFAG +Q +FALQRDRQNMGRRYVE
Sbjct: 60 FNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVE 119
Query: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187
VFRCK+QDYY+AVASEVNYEGIYDNDFHGSPPPSR+KR++DKDQMEHTEILK+RGLPFSV
Sbjct: 120 VFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSV 179
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
KKS+I++FF D+++ +DK+HIACRPDGKATGEAYVEF S EEAK+AM KDKMTIGSRYVE
Sbjct: 180 KKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVE 239
Query: 248 LFPSTPDEARRAESRSRQ 265
LFPSTPDEARRAESRSRQ
Sbjct: 240 LFPSTPDEARRAESRSRQ 257
>gi|449434084|ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 263
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/265 (86%), Positives = 245/265 (92%), Gaps = 2/265 (0%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYG RGA+LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSS +GFQPYGYG FPP +FPV
Sbjct: 1 MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS-FPPTHAFPV 59
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNCTDIDI KFFAGLDIVDVLLVNKNGRF GEAFVVFAG +QVEFALQRDRQN
Sbjct: 60 VRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQN 119
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MGRRYVEVFRCKRQDYYNAVA+EVNYEGIYDND+HGSPPP R KR++DKDQME+TEILK+
Sbjct: 120 MGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKL 178
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPFSV KS I++FF ++ + ED+IHIA RPDGKATGEAYVEF S EEAKRAM KDKMT
Sbjct: 179 RGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMT 238
Query: 241 IGSRYVELFPSTPDEARRAESRSRQ 265
IGSRYVELFPSTP+EARRAESRSRQ
Sbjct: 239 IGSRYVELFPSTPNEARRAESRSRQ 263
>gi|356559210|ref|XP_003547893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Glycine
max]
Length = 264
Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/266 (86%), Positives = 246/266 (92%), Gaps = 3/266 (1%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYG RGA+LGSGGVSDGYEVGSKRQRMME NPYFAVSS +G PYGY GGF PPP FPV
Sbjct: 1 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSS-GTGNLPYGYAGGFQPPP-FPV 58
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNCTDIDI KFFAGL IVDVLLVNK+GRFSGEAFVVFAG +QVEFALQRDRQN
Sbjct: 59 VRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQN 118
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGS-PPPSRAKRYNDKDQMEHTEILK 179
MGRRYVEVFRCK+QDYYNAVA+E+ YEGIYDND+ GS PPPSR+KR+NDKDQME TEILK
Sbjct: 119 MGRRYVEVFRCKKQDYYNAVAAEIKYEGIYDNDYQGSSPPPSRSKRFNDKDQMECTEILK 178
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLPF V KS+IV+FFKD+K+IED++HIACRPDGK+TGEAYVEFVS EEAKRAM KDKM
Sbjct: 179 MRGLPFQVTKSQIVEFFKDFKLIEDRVHIACRPDGKSTGEAYVEFVSAEEAKRAMSKDKM 238
Query: 240 TIGSRYVELFPSTPDEARRAESRSRQ 265
TIGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 239 TIGSRYVELFPSTPDEARRAESRSRQ 264
>gi|356531343|ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Glycine max]
Length = 257
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/259 (87%), Positives = 241/259 (93%), Gaps = 3/259 (1%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67
+LGSGGVSDGYEVGSKRQRMME NPYFAVSS +G PYGY GGF PPP FPVVRLRGLP
Sbjct: 1 MLGSGGVSDGYEVGSKRQRMMESNPYFAVSS-GTGNLPYGYAGGFQPPP-FPVVRLRGLP 58
Query: 68 FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
FNCTDIDI KFFAGL IVDVLLVNK+GRFSGEAFVVFAG +QVEFALQRDRQNMGRRYVE
Sbjct: 59 FNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVE 118
Query: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHG-SPPPSRAKRYNDKDQMEHTEILKMRGLPFS 186
VFRCK+QDYYNAVA E+NYEGIYDND+HG SPPPSR KR+NDKDQME+TEILKMRGLPF
Sbjct: 119 VFRCKKQDYYNAVAGEINYEGIYDNDYHGSSPPPSRLKRFNDKDQMEYTEILKMRGLPFQ 178
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
V KS+IV+FFKD+K+IED++HIACRPDGKATGEAYVEFVS EEAKRAM KDKMTIGSRYV
Sbjct: 179 VTKSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYV 238
Query: 247 ELFPSTPDEARRAESRSRQ 265
ELFPSTPDEARRAESRSRQ
Sbjct: 239 ELFPSTPDEARRAESRSRQ 257
>gi|449491253|ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 256
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/258 (86%), Positives = 239/258 (92%), Gaps = 2/258 (0%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLP 67
+LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSS +GFQPYGYG FPP +FPVVRLRGLP
Sbjct: 1 MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGS-FPPTHAFPVVRLRGLP 59
Query: 68 FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
FNCTDIDI KFFAGLDIVDVLLVNKNGRF GEAFVVFAG +QVEFALQRDRQNMGRRYVE
Sbjct: 60 FNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVE 119
Query: 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187
VFRCKRQDYYNAVA+EVNYEGIYDND+HGSPPP R KR++DKDQME+TEILK+RGLPFSV
Sbjct: 120 VFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPP-RQKRFSDKDQMEYTEILKLRGLPFSV 178
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
KS I++FF ++ + ED+IHIA RPDGKATGEAYVEF S EEAKRAM KDKMTIGSRYVE
Sbjct: 179 TKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVE 238
Query: 248 LFPSTPDEARRAESRSRQ 265
LFPSTP+EARRAESRSRQ
Sbjct: 239 LFPSTPNEARRAESRSRQ 256
>gi|357517683|ref|XP_003629130.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355523152|gb|AET03606.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 290
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/267 (82%), Positives = 241/267 (90%), Gaps = 2/267 (0%)
Query: 1 MYGS-RGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFP 59
+YG+ RGA+LGSGGVSDGYEVGSKRQRMME NPYFAVSS +Q YGY GG PP
Sbjct: 24 IYGAPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGTGSYQHYGYAGGGFQPPPPF 83
Query: 60 -VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLPFNCTDIDI KFFAGL IVDVLLVNK+GRFSGEAFVVFAG +QVEFALQRDR
Sbjct: 84 PVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDR 143
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
QNMGRRYVEVFRCK+QDYYNAVA E+NYEGIYDND+ GSPPPSR+KR++DK+QM++TEIL
Sbjct: 144 QNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDNDYQGSPPPSRSKRFSDKEQMDYTEIL 203
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
KMRGLPF V KS+I+ FFKDYK+IE ++HIACRPDGKATGEAYVEFVS +EAKRAM KDK
Sbjct: 204 KMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDK 263
Query: 239 MTIGSRYVELFPSTPDEARRAESRSRQ 265
MTIGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 264 MTIGSRYVELFPSTPDEARRAESRSRQ 290
>gi|296088657|emb|CBI37648.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/260 (78%), Positives = 227/260 (87%), Gaps = 22/260 (8%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYGSRGA+LGSGGVSDGYE+GSKRQRMME NPYFAVSSSASGFQPYGYG GF PP +FPV
Sbjct: 1 MYGSRGAMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPP-TFPV 59
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNCTDIDI KFFAGLDIVDVLLVNK+GRFSGEA+VVFAG +Q +FALQRDRQN
Sbjct: 60 VRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQN 119
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MGRRYVEVFRCK+QDYY+AVASE R++DKDQMEHTEILK+
Sbjct: 120 MGRRYVEVFRCKKQDYYHAVASE---------------------RFSDKDQMEHTEILKL 158
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPFSVKKS+I++FF D+++ +DK+HIACRPDGKATGEAYVEF S EEAK+AM KDKMT
Sbjct: 159 RGLPFSVKKSQILEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMT 218
Query: 241 IGSRYVELFPSTPDEARRAE 260
IGSRYVELFPSTPDEARRA+
Sbjct: 219 IGSRYVELFPSTPDEARRAD 238
>gi|145359708|ref|NP_201402.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010757|gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 255
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/268 (68%), Positives = 222/268 (82%), Gaps = 16/268 (5%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYGSRGA+ GSGG YEVGSKRQRMM+ NPY AV + + F P+GY GGFP V
Sbjct: 1 MYGSRGAMFGSGG----YEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAGGFP------V 50
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNC DIDI +FFAGL+IVDVLLV+KNG+FSGEAFVVFAGP+QVE ALQRDR N
Sbjct: 51 VRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHN 110
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---SRAKRYNDKDQMEHTEI 177
MGRRYVEVFRC +QDYYNAVA+E EG Y+ + SPPP SRAKR+++K+++E+TE+
Sbjct: 111 MGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEV 167
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
LKMRGLP+SV K +I++FF YK+I+ ++ + CRPDGKATGEA+VEF + EEA+RAM KD
Sbjct: 168 LKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKD 227
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
KM+IGSRYVELFP+T +EARRAE+RSRQ
Sbjct: 228 KMSIGSRYVELFPTTREEARRAEARSRQ 255
>gi|297797787|ref|XP_002866778.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312613|gb|EFH43037.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 255
Score = 356 bits (914), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 184/268 (68%), Positives = 221/268 (82%), Gaps = 16/268 (5%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV 60
MYGSRGA+ GSGG YEVGSKRQRMM+ NPY AV + + F P+GY GFP V
Sbjct: 1 MYGSRGAMFGSGG----YEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYACGFP------V 50
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFNC DIDI KFF+GLDIVDVLLV+KNG+FSGEAFVVFAGP+QVE +LQRDR N
Sbjct: 51 VRLRGLPFNCADIDIFKFFSGLDIVDVLLVSKNGKFSGEAFVVFAGPMQVEISLQRDRHN 110
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---SRAKRYNDKDQMEHTEI 177
MGRRYVEVFRC +QDYYNAVA+E EG Y+ + SPPP SRAKR+++K+++E+TE+
Sbjct: 111 MGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEARASPPPTVPSRAKRFSEKEKLEYTEV 167
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
LKMRGLP+SV K +I++FF YK+IE ++ + CRPDGKATGEA+VEF + EEA+RAM KD
Sbjct: 168 LKMRGLPYSVNKPQIIEFFSGYKVIEGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKD 227
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
KM+IGSRYVELFP+T +EARRAE+RSRQ
Sbjct: 228 KMSIGSRYVELFPTTREEARRAEARSRQ 255
>gi|294461466|gb|ADE76294.1| unknown [Picea sitchensis]
Length = 262
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 173/266 (65%), Positives = 207/266 (77%), Gaps = 10/266 (3%)
Query: 4 SRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFP----PPPSFP 59
SRGA+LG GG+S+GYEV SKRQRM++P+PYF S S F PYGYG G P P SFP
Sbjct: 3 SRGAMLGGGGMSEGYEVSSKRQRMIDPDPYF---SGTSAFGPYGYGSGMPYLANQPRSFP 59
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VVRLRGLPFNC+D D+C+FFAGLD+VDVLLV+K GRFSGE FVVF P+QV+FALQRDRQ
Sbjct: 60 VVRLRGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQ 119
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
NMGRRY+EVFRCK+QDYYNA+A+EVN D+ +PP +K +DKD MEHT ILK
Sbjct: 120 NMGRRYIEVFRCKKQDYYNAIAAEVNEPKGGDD---AAPPSGYSKGSSDKDHMEHTGILK 176
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+RGLPFSV K +I++FF DY + E +HI DG+ATGEA+VEF + ++K AM KDKM
Sbjct: 177 LRGLPFSVSKRDIIEFFTDYDLSETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSKDKM 236
Query: 240 TIGSRYVELFPSTPDEARRAESRSRQ 265
IG+RYVELFPST +EA RA SRSR
Sbjct: 237 MIGTRYVELFPSTREEASRAASRSRH 262
>gi|10177116|dbj|BAB10406.1| unnamed protein product [Arabidopsis thaliana]
Length = 248
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/254 (68%), Positives = 212/254 (83%), Gaps = 12/254 (4%)
Query: 15 SDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDID 74
S GYEVGSKRQRMM+ NPY AV + + F P+GY GGFP VVRLRGLPFNC DID
Sbjct: 4 SGGYEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAGGFP------VVRLRGLPFNCADID 57
Query: 75 ICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQ 134
I +FFAGL+IVDVLLV+KNG+FSGEAFVVFAGP+QVE ALQRDR NMGRRYVEVFRC +Q
Sbjct: 58 IFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCSKQ 117
Query: 135 DYYNAVASEVNYEGIYDNDFHGSPPP---SRAKRYNDKDQMEHTEILKMRGLPFSVKKSE 191
DYYNAVA+E EG Y+ + SPPP SRAKR+++K+++E+TE+LKMRGLP+SV K +
Sbjct: 118 DYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQ 174
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
I++FF YK+I+ ++ + CRPDGKATGEA+VEF + EEA+RAM KDKM+IGSRYVELFP+
Sbjct: 175 IIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPT 234
Query: 252 TPDEARRAESRSRQ 265
T +EARRAE+RSRQ
Sbjct: 235 TREEARRAEARSRQ 248
>gi|294460097|gb|ADE75631.1| unknown [Picea sitchensis]
Length = 256
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/262 (64%), Positives = 203/262 (77%), Gaps = 10/262 (3%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFP----PPPSFPVVRL 63
+LG GG+S+GYEV SKRQRM++P+PYF S S F PYGYG G P P SFPVVRL
Sbjct: 1 MLGGGGMSEGYEVSSKRQRMIDPDPYF---SGTSAFGPYGYGSGMPYLANQPRSFPVVRL 57
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGR 123
RGLPFNC+D D+C+FFAGLD+VDVLLV+K GRFSGE FVVF P+QV+FALQRDRQNMGR
Sbjct: 58 RGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQNMGR 117
Query: 124 RYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGL 183
RY+EVFRCK+QDYYNA+A+EVN D+ +PP +K +DKD MEHT ILK+RGL
Sbjct: 118 RYIEVFRCKKQDYYNAIAAEVNEPKGGDD---AAPPSGYSKGSSDKDHMEHTGILKLRGL 174
Query: 184 PFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGS 243
PFSV K +I++FF DY + E +HI DG+ATGEA+VEF + ++K AM KDKM IG+
Sbjct: 175 PFSVSKRDIIEFFTDYDLSETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIGT 234
Query: 244 RYVELFPSTPDEARRAESRSRQ 265
RYVELFPST +EA RA SRSR
Sbjct: 235 RYVELFPSTREEASRAASRSRH 256
>gi|115484017|ref|NP_001065670.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|77548595|gb|ABA91392.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
gi|113644374|dbj|BAF27515.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|215764972|dbj|BAG86669.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222615462|gb|EEE51594.1| hypothetical protein OsJ_32846 [Oryza sativa Japonica Group]
Length = 298
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/299 (58%), Positives = 216/299 (72%), Gaps = 35/299 (11%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVS----------------------- 37
MYG RGA++G GGVSDGYE GSKR RM+E NPYFAV+
Sbjct: 1 MYGHRGAMMGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGA 59
Query: 38 --SSASG-----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD 86
SSA+G +QPYG G +FP VRLRGLPF+C D+DI KFF GLDIVD
Sbjct: 60 MGSSAAGGTSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVD 119
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNY 146
LLV+KNGRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EVN
Sbjct: 120 CLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQ 179
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
G +D+++ SPPP K DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +
Sbjct: 180 GGFFDSEYRHSPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENV 239
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
HIA RPDGKATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+EA RA+SR+RQ
Sbjct: 240 HIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRARQ 298
>gi|294461682|gb|ADE76400.1| unknown [Picea sitchensis]
Length = 265
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/269 (63%), Positives = 206/269 (76%), Gaps = 13/269 (4%)
Query: 4 SRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPY-GYGGGFP------PPP 56
SRGA+LG GG+S+GYEV SKRQRM++P PYF S SGF PY G G G P P
Sbjct: 3 SRGAMLGGGGMSEGYEVSSKRQRMIDPEPYF---SGPSGFGPYSGLGSGMPMPYLAGQPR 59
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
FPVVRLRGLPFNC++ DIC+FFAGLD+VD LLV+K GRFSGE FV+F P+QV+FALQR
Sbjct: 60 VFPVVRLRGLPFNCSESDICEFFAGLDVVDALLVHKQGRFSGEGFVLFRSPMQVDFALQR 119
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
DRQNMGRRY+EVFRCK+QDYYNAVA+EVN D+ +PP +K ++KD MEHT
Sbjct: 120 DRQNMGRRYIEVFRCKKQDYYNAVAAEVNEPKAGDD---AAPPSGYSKGSSEKDHMEHTG 176
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
LK+RGLPFSV + +IV+FFKDY++ E +HI DG+ATGEA+VEF S ++K AM K
Sbjct: 177 FLKLRGLPFSVSRRDIVEFFKDYQLKEKNVHIVTHSDGRATGEAFVEFSSAADSKDAMSK 236
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
DKMTIG+RYVELFPST +EA RA SRSR
Sbjct: 237 DKMTIGTRYVELFPSTQEEASRAASRSRH 265
>gi|346703709|emb|CBX24377.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 171/292 (58%), Positives = 208/292 (71%), Gaps = 36/292 (12%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSASG- 42
+G GGVSDGYE GSKR RM+E NPYFAV+ SSA+G
Sbjct: 1 MGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGG 59
Query: 43 ----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG 94
+QPYG G +FP VRLRGLPF+C D+DICKFF GLDIVD LLV+KNG
Sbjct: 60 TSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNG 119
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
RF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EVN G +D+++
Sbjct: 120 RFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEY 179
Query: 155 -HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
H PPP K DK ME+TE+LK+RGLP+S EI++FF +Y++ ++ +HI RPD
Sbjct: 180 RHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEEIIKFFVEYELTDENVHIVYRPD 239
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
GKATGEAYVEF + E AK AMCKDKMTIG+RYVELFPSTP+EA RA+SR RQ
Sbjct: 240 GKATGEAYVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRVRQ 291
>gi|346703322|emb|CBX25419.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/292 (58%), Positives = 209/292 (71%), Gaps = 36/292 (12%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSASG- 42
+G GGVSDGYE GSKR RM+E NPYFAV+ SSA+G
Sbjct: 1 MGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGG 59
Query: 43 ----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG 94
+QPYG G +FP VRLRGLPF+C D+DICKFF GLDIVD LLV+KNG
Sbjct: 60 TSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNG 119
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
RF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EVN G +D+++
Sbjct: 120 RFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEY 179
Query: 155 -HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
H PPP K DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +HIA RPD
Sbjct: 180 RHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPD 239
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
GKATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+EA R +SR+RQ
Sbjct: 240 GKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRVKSRARQ 291
>gi|297612598|ref|NP_001066073.2| Os12g0131000 [Oryza sativa Japonica Group]
gi|255670013|dbj|BAF29092.2| Os12g0131000 [Oryza sativa Japonica Group]
Length = 292
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 169/293 (57%), Positives = 208/293 (70%), Gaps = 36/293 (12%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSASG 42
++G GGVSDGYE GSKR RM+E NPYFAV+ SSA+G
Sbjct: 1 MMGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAG 59
Query: 43 -----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN 93
+QPYG G +FP VRLRGLPF+C D+DICKFF GLDIVD LLV+KN
Sbjct: 60 GTSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKN 119
Query: 94 GRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND 153
GRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EVN G +D++
Sbjct: 120 GRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSE 179
Query: 154 F-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
+ H PPP K DK ME+TE+LK+RGLP+S +I++FF +Y++ ++ +HI RP
Sbjct: 180 YRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRP 239
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
DGKATGEAYVEF + E K AMCKDKMTIG+RYVELFPSTP+EA RA+SR RQ
Sbjct: 240 DGKATGEAYVEFPTAEVVKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRVRQ 292
>gi|222616578|gb|EEE52710.1| hypothetical protein OsJ_35118 [Oryza sativa Japonica Group]
Length = 291
Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/292 (57%), Positives = 207/292 (70%), Gaps = 36/292 (12%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSASG- 42
+G GGVSDGYE GSKR RM+E NPYFAV+ SSA+G
Sbjct: 1 MGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGG 59
Query: 43 ----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG 94
+QPYG G +FP VRLRGLPF+C D+DICKFF GLDIVD LLV+KNG
Sbjct: 60 TSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNG 119
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
RF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EVN G +D+++
Sbjct: 120 RFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEY 179
Query: 155 -HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
H PPP K DK ME+TE+LK+RGLP+S +I++FF +Y++ ++ +HI RPD
Sbjct: 180 RHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPD 239
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
GKATGEAYVEF + E K AMCKDKMTIG+RYVELFPSTP+EA RA+SR RQ
Sbjct: 240 GKATGEAYVEFPTAEVVKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRVRQ 291
>gi|238013930|gb|ACR38000.1| unknown [Zea mays]
gi|413946698|gb|AFW79347.1| RNA binding protein [Zea mays]
Length = 295
Score = 306 bits (783), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 166/296 (56%), Positives = 202/296 (68%), Gaps = 39/296 (13%)
Query: 8 ILGSGGVSDGYEVGSKRQRMM-EPNPYFAVSSS--------------------ASGFQPY 46
++G GVSDGYE GSKR RMM E NPYFAV++ A G
Sbjct: 1 MMGGWGVSDGYE-GSKRTRMMMESNPYFAVNAGSPLDVSKRSRIVEPGPPYFGAMGSNTG 59
Query: 47 GYGGGFPPP---------------PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN 91
G GGF P +FP VRLRGLPF+C DIDICKFF GLDIVD LLVN
Sbjct: 60 GASGGFYQPFNSSNLAGAGASTGIQNFPGVRLRGLPFDCNDIDICKFFVGLDIVDCLLVN 119
Query: 92 KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD 151
KNGRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EV+ G ++
Sbjct: 120 KNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKQEYYSAIANEVSQGGYFE 179
Query: 152 NDFHGSPPPSRA--KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
++ S PP R K DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +HIA
Sbjct: 180 SECRRSSPPPRPPKKTAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIA 239
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
R DGKATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+EA RA +R R
Sbjct: 240 IRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRARTRGRH 295
>gi|357143317|ref|XP_003572878.1| PREDICTED: G-rich sequence factor 1-like isoform 1 [Brachypodium
distachyon]
Length = 292
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/294 (56%), Positives = 200/294 (68%), Gaps = 38/294 (12%)
Query: 8 ILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPP----------- 56
++ GGVSDGYE GSKR RM E NPYFAV++ S P P P
Sbjct: 1 MMRGGGVSDGYE-GSKRPRMFESNPYFAVNA-GSPLDPSKRARMMEPGPPYFGAMGSNTG 58
Query: 57 ------------------------SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK 92
SFP VRLRGLPF+C D+DI KFF GLDIVD LLV+K
Sbjct: 59 GSGSGFYAPYSGNLAGAGVNSGIQSFPGVRLRGLPFDCEDLDIIKFFVGLDIVDCLLVHK 118
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN 152
NGRFSGEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+AVASEVN G +D+
Sbjct: 119 NGRFSGEAFVVFPSTMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAVASEVNQGGFFDS 178
Query: 153 DF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211
++ H PPP K DK M++TE+LK+RGLP+S +I++FF +Y++ ED +HIA R
Sbjct: 179 EYRHSPPPPRPKKPAEDKSSMDYTEVLKLRGLPYSATIEDIIKFFVEYELTEDNVHIAYR 238
Query: 212 PDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
DGKATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+EA RA+SR RQ
Sbjct: 239 SDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRGRQ 292
>gi|226500358|ref|NP_001148837.1| LOC100282455 [Zea mays]
gi|195622512|gb|ACG33086.1| RNA binding protein [Zea mays]
gi|238009718|gb|ACR35894.1| unknown [Zea mays]
Length = 303
Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/295 (55%), Positives = 199/295 (67%), Gaps = 37/295 (12%)
Query: 7 AILGSGGVSDGYEVGSKRQRMM-EPNPYFAVSSSA------------------------- 40
A++G G SDGYE GSKR RMM E NPYFAV++ +
Sbjct: 10 AMMGGWGGSDGYE-GSKRTRMMMESNPYFAVNAGSPLDVSKRARMMEPGAPYFGAMGSSA 68
Query: 41 -----SGFQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN 91
+QP+ G SFP VRLRGLPF+C DID+CKFF GLDIVD LLVN
Sbjct: 69 SGAGGGFYQPFNSNLAGAGSSTGIQSFPCVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVN 128
Query: 92 KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD 151
KNGRF+GEAFVVF +Q EFAL RDRQNMGRRYVEVFRCK+ +YY A+A+EVN G ++
Sbjct: 129 KNGRFTGEAFVVFPTAMQAEFALHRDRQNMGRRYVEVFRCKKHEYYCAIANEVNQGGYFE 188
Query: 152 NDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210
++ PPP K DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +HIA
Sbjct: 189 PEYRRSPPPPRPRKPSEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAY 248
Query: 211 RPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
R DGKATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+EA RA+SR R
Sbjct: 249 RSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRGRH 303
>gi|218185179|gb|EEC67606.1| hypothetical protein OsI_34981 [Oryza sativa Indica Group]
Length = 270
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 160/291 (54%), Positives = 195/291 (67%), Gaps = 55/291 (18%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSASG- 42
+G GGVSDGYE GSKR RM+E NPYFAV+ SSA+G
Sbjct: 1 MGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGG 59
Query: 43 ----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG 94
+QPYG G +FP VRLRGLPF+C D+DI KFF GLDIVD LLV+KNG
Sbjct: 60 TSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNG 119
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
RF+GEAFVVF +Q EFAL R+RQNMGRRYVE RCK+Q+YY+A+A+E
Sbjct: 120 RFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEGCRCKKQEYYSAIAAE----------- 168
Query: 155 HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG 214
K DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +HIA RPDG
Sbjct: 169 ---------KPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDG 219
Query: 215 KATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
KATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+EA RA+SR+RQ
Sbjct: 220 KATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRARQ 270
>gi|357143320|ref|XP_003572879.1| PREDICTED: G-rich sequence factor 1-like isoform 2 [Brachypodium
distachyon]
Length = 274
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 159/259 (61%), Positives = 190/259 (73%), Gaps = 18/259 (6%)
Query: 22 SKRQRMMEPNP-YFAVSSSASG------FQPY-------GYGGGFPPPPSFPVVRLRGLP 67
SKR RMMEP P YF S +G + PY G G SFP VRLRGLP
Sbjct: 19 SKRARMMEPGPPYFGAMGSNTGGSGSGFYAPYSGNLAGAGVNSGIQ---SFPGVRLRGLP 75
Query: 68 FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
F+C D+DI KFF GLDIVD LLV+KNGRFSGEAFVVF +Q EFAL R+RQNMGRRYVE
Sbjct: 76 FDCEDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQNMGRRYVE 135
Query: 128 VFRCKRQDYYNAVASEVNYEGIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFS 186
VFRCK+Q+YY+AVASEVN G +D+++ H PPP K DK M++TE+LK+RGLP+S
Sbjct: 136 VFRCKKQEYYSAVASEVNQGGFFDSEYRHSPPPPRPKKPAEDKSSMDYTEVLKLRGLPYS 195
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
+I++FF +Y++ ED +HIA R DGKATGEA+VEF + E AK AMCKDKMTIG+RYV
Sbjct: 196 ATIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYV 255
Query: 247 ELFPSTPDEARRAESRSRQ 265
ELFPSTP+EA RA+SR RQ
Sbjct: 256 ELFPSTPEEASRAKSRGRQ 274
>gi|238006754|gb|ACR34412.1| unknown [Zea mays]
Length = 251
Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/251 (59%), Positives = 182/251 (72%), Gaps = 12/251 (4%)
Query: 27 MMEPN-PYFAVSSSASG------FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDI 75
MMEP PYF S++ +QP+ G SFP VRLRGLPF+C DID+
Sbjct: 1 MMEPGAPYFGAMGSSASGAGGGFYQPFNSNLAGAGSSTGIQSFPCVRLRGLPFDCNDIDV 60
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CKFF GLDIVD LLVNKNGRF+GEAFVVF +Q EFAL RDRQNMGRRYVEVFRCK+ +
Sbjct: 61 CKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQNMGRRYVEVFRCKKHE 120
Query: 136 YYNAVASEVNYEGIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQ 194
YY A+A+EVN G ++ ++ PPP K DK ME+TE+LK+RGLP+S +I++
Sbjct: 121 YYCAIANEVNQGGYFEPEYRRSPPPPRPRKPSEDKGSMEYTEVLKLRGLPYSATTEDIIK 180
Query: 195 FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 254
FF +Y++ E+ +HIA R DGKATGEA+VEF + E AK AMCKDKMTIG+RYVELFPSTP+
Sbjct: 181 FFLEYELAEENVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTPE 240
Query: 255 EARRAESRSRQ 265
EA RA+SR R
Sbjct: 241 EASRAKSRGRH 251
>gi|388513407|gb|AFK44765.1| unknown [Medicago truncatula]
Length = 158
Score = 282 bits (722), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 133/158 (84%), Positives = 150/158 (94%)
Query: 108 IQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN 167
+QVEFALQRDRQNMGRRYVEVFRCK+QDYYNAVA E+NYEGIYD+D+ GSPPPSR+KR++
Sbjct: 1 MQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDDDYQGSPPPSRSKRFS 60
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
DK+QM++TEILKMRGLPF V KS+I+ FFKDYK+IE ++HIACRPDGKATGEAYVEFVS
Sbjct: 61 DKEQMDYTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSP 120
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+EAKRAM KDKMTIGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 121 DEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSRQ 158
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++++RGLPF T I FF +++ + +G+ +GEA+V F P + + A+ +
Sbjct: 70 ILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFK 129
Query: 117 DRQNMGRRYVEVF 129
D+ +G RYVE+F
Sbjct: 130 DKMTIGSRYVELF 142
>gi|413946699|gb|AFW79348.1| hypothetical protein ZEAMMB73_203104 [Zea mays]
Length = 242
Score = 282 bits (722), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/211 (64%), Positives = 169/211 (80%), Gaps = 2/211 (0%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+FP VRLRGLPF+C DIDICKFF GLDIVD LLVNKNGRF+GEAFVVF +Q EFAL R
Sbjct: 32 NFPGVRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHR 91
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA--KRYNDKDQMEH 174
+RQNMGRRYVEVFRCK+Q+YY+A+A+EV+ G ++++ S PP R K DK ME+
Sbjct: 92 NRQNMGRRYVEVFRCKKQEYYSAIANEVSQGGYFESECRRSSPPPRPPKKTAEDKGSMEY 151
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
TE+LK+RGLP+S +I++FF +Y++ E+ +HIA R DGKATGEA+VEF + E AK AM
Sbjct: 152 TEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTAM 211
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
CKDKMTIG+RYVELFPSTP+EA RA +R R
Sbjct: 212 CKDKMTIGTRYVELFPSTPEEASRARTRGRH 242
>gi|223944441|gb|ACN26304.1| unknown [Zea mays]
Length = 284
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/258 (55%), Positives = 178/258 (68%), Gaps = 21/258 (8%)
Query: 25 QRMMEPNP-YFAVSSSASGFQPYGYGGGFPPP--------------PSFPVVRLRGLPFN 69
+R+ EP P YF S +G G GGF P +FP VRLRGLPF+
Sbjct: 31 KRIFEPGPPYFGAMGSNTG----GASGGFYQPFNSNLAGAGASTGIQNFPGVRLRGLPFD 86
Query: 70 CTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
C DIDICKFF GLDIVD LLVNKNGRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVF
Sbjct: 87 CNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVF 146
Query: 130 RCKRQDYYNAVASEVNYEGIYDNDFH--GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187
RCK+ +YY A+A+EV+ G +++++ P K DK ME+TE+LK+RGLP+S
Sbjct: 147 RCKKLEYYRAIANEVSQGGYFESEYRRSSPPLSPPKKPAEDKGSMEYTEVLKLRGLPYSA 206
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
+I++FF +Y++ E+ +HIA DGKATGEA+VEF + E AK MCKDKMTIG+RYVE
Sbjct: 207 TTEDIIKFFLEYELTEENVHIAISSDGKATGEAFVEFPTTEVAKTVMCKDKMTIGTRYVE 266
Query: 248 LFPSTPDEARRAESRSRQ 265
LFPSTP+E RA +R R
Sbjct: 267 LFPSTPEEVSRARTRGRH 284
>gi|224059562|ref|XP_002299908.1| predicted protein [Populus trichocarpa]
gi|222847166|gb|EEE84713.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 186/256 (72%), Gaps = 16/256 (6%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGFQ----PYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG E+G+KRQRM++ P F +S S F PYGY PPP FPVVRLRGLPF+CT
Sbjct: 7 DGREMGAKRQRMVDQGPSFYGNSPGSSFMYNTPPYGYVS--QPPPPFPVVRLRGLPFDCT 64
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF GLDIVDVL V+K G+F+GEAF V P+QV+FALQ++RQNMGRRYVEVFR
Sbjct: 65 ETDVAEFFRGLDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRS 124
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSP--PPSRAKRYND-KDQMEHTEILKMRGLPFSVK 188
KRQDYY A+A+EV ++ GSP SRAK Y++ KD EHT +L++RGLPFS
Sbjct: 125 KRQDYYKAIANEV-------SESRGSPRRNISRAKSYDEGKDLAEHTGVLRLRGLPFSAG 177
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
K +I++FFKD+ + ED IHI +G+ TGEA+VEF + E++K AM KD+MT+GSRY+EL
Sbjct: 178 KDDIMEFFKDFVLSEDLIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 237
Query: 249 FPSTPDEARRAESRSR 264
FPS+ +E A SR R
Sbjct: 238 FPSSIEELDEAVSRGR 253
>gi|302789778|ref|XP_002976657.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
gi|300155695|gb|EFJ22326.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
Length = 287
Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 192/285 (67%), Gaps = 24/285 (8%)
Query: 4 SRGAILGSGGVSDGYEVGS-KRQRMME-PNPYFAVSSSASGFQP-YGYGG-GFP---PPP 56
SRG +LGSGG +DGYEV + KRQR+++ YF S A+ + YGG GF P
Sbjct: 3 SRGNLLGSGGSADGYEVAAAKRQRLLDTAGSYFGSSPHATAAHASFMYGGPGFSFLGQPR 62
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
FPVVRLRGLPFNC++ D+ +FFAGLD+VDVLLV K GRFSGEAFVV P+QV+FALQR
Sbjct: 63 PFPVVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQR 122
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVN-----------------YEGIYDNDFHGSPP 159
+RQNMGRRYVEVFR K+QDYY+AVA+EVN G G
Sbjct: 123 NRQNMGRRYVEVFRSKKQDYYSAVATEVNDPRSGDVLATLASSAAGGGGGGGGGGGGGGG 182
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
S DKD EHT +LK+RGLPFS K +IV+FF+++ + ED + I DG+ATGE
Sbjct: 183 GSGKNSLCDKDLAEHTGVLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVVHSDGRATGE 242
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
AYV F+ ++K AM KDKMT+G+RYVELFPS+ +EA RA S+SR
Sbjct: 243 AYVFFLGPGDSKAAMNKDKMTLGNRYVELFPSSREEANRAASKSR 287
>gi|302782846|ref|XP_002973196.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
gi|300158949|gb|EFJ25570.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
Length = 289
Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 155/287 (54%), Positives = 192/287 (66%), Gaps = 26/287 (9%)
Query: 4 SRGAILGSGGVSDGYEVGS-KRQRMME-PNPYFAVSSSASGFQP-YGYGG-GFP---PPP 56
SRG +LGSGG +DGYEV + KRQR+++ YF S A+ + YGG GF P
Sbjct: 3 SRGNLLGSGGSADGYEVAAAKRQRLLDTAGSYFGSSPHATAAHASFMYGGPGFAFLGQPR 62
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
FPVVRLRGLPFNC++ D+ +FFAGLD+VDVLLV K GRFSGEAFVV P+QV+FALQR
Sbjct: 63 PFPVVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQR 122
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVN-------------------YEGIYDNDFHGS 157
+RQNMGRRYVEVFR K+QDYY+AVA+EVN G G
Sbjct: 123 NRQNMGRRYVEVFRSKKQDYYSAVATEVNDPRSGDVLATLASSAAGGGGGGGGSGGGGGG 182
Query: 158 PPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 217
S DKD EHT +LK+RGLPFS K +IV+FF+++ + ED + I DG+AT
Sbjct: 183 GGSSGKNSLCDKDLAEHTGVLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVVHSDGRAT 242
Query: 218 GEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
GEAYV F+ ++K AM KDKMT+G+RYVELFPS+ +EA RA S+SR
Sbjct: 243 GEAYVFFLGPGDSKAAMNKDKMTLGNRYVELFPSSREEANRAASKSR 289
>gi|224104153|ref|XP_002313339.1| predicted protein [Populus trichocarpa]
gi|222849747|gb|EEE87294.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/259 (54%), Positives = 184/259 (71%), Gaps = 17/259 (6%)
Query: 13 GVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQ----PYGYGGGFPPPPSFPVVRLRGLPF 68
G DG E+G+KRQR+ + P F +S S F P GY PP FPVVRLRGLPF
Sbjct: 5 GYPDGREMGAKRQRIADKGPSFYANSPGSSFMYNAPPNGYAS---QPPHFPVVRLRGLPF 61
Query: 69 NCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEV 128
+CT+ D+ +FF GLDIVDVL V+K G+FSGEAF V P+QV+FALQ++RQNMGRRYVEV
Sbjct: 62 DCTETDVAEFFHGLDIVDVLFVHKGGKFSGEAFCVLGYPLQVDFALQKNRQNMGRRYVEV 121
Query: 129 FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS--RAKRYND-KDQMEHTEILKMRGLPF 185
FR KRQDYY +A+EV ++ GSP + RAK Y++ KD EHT +L++RGLPF
Sbjct: 122 FRSKRQDYYKTIANEV-------SESRGSPRRNIPRAKSYDEGKDSAEHTGVLRLRGLPF 174
Query: 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
S K +I++FFKD+ + ED IHI +G+ TGEA+VEF + E++K AM KD+MT+GSRY
Sbjct: 175 SASKDDIMEFFKDFVLSEDSIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 234
Query: 246 VELFPSTPDEARRAESRSR 264
+ELFPS+ +E+ A SR R
Sbjct: 235 IELFPSSVEESDEAVSRGR 253
>gi|239052941|ref|NP_001131830.2| uncharacterized protein LOC100193205 [Zea mays]
gi|223943183|gb|ACN25675.1| unknown [Zea mays]
gi|238908614|gb|ACF80415.2| unknown [Zea mays]
Length = 241
Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 136/237 (57%), Positives = 171/237 (72%), Gaps = 8/237 (3%)
Query: 37 SSSASG--FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV 90
+ ASG +QP+ G +FP VRLRGLPF+C DIDICKFF GLDIVD LLV
Sbjct: 5 TGGASGGFYQPFNSNLAGAGASTGIQNFPGVRLRGLPFDCNDIDICKFFVGLDIVDCLLV 64
Query: 91 NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIY 150
NKNGRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+ +YY A+A+EV+ G +
Sbjct: 65 NKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKLEYYRAIANEVSQGGYF 124
Query: 151 DNDFH--GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
++++ P K DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +HI
Sbjct: 125 ESEYRRSSPPLSPPKKPAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHI 184
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
A DGKATGEA+VEF + E AK MCKDKMTIG+RYVELFPSTP+E RA +R R
Sbjct: 185 AISSDGKATGEAFVEFPTTEVAKTVMCKDKMTIGTRYVELFPSTPEEVSRARTRGRH 241
>gi|255544880|ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223547409|gb|EEF48904.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 260
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 182/256 (71%), Gaps = 17/256 (6%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGFQ----PYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG E+G+KRQR+++ P + +S F PYGY PP FPVVRLRGLPF+CT
Sbjct: 15 DGREMGAKRQRLVDQGPSYYGTSPGPSFMYNPPPYGY---VAQPPPFPVVRLRGLPFDCT 71
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF GLDIVDVL V+K G+F+GEAF V P+QV+FALQ++RQNMGRRYVEVFR
Sbjct: 72 ETDVAEFFHGLDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQKNRQNMGRRYVEVFRS 131
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYND-KDQMEHTEILKMRGLPFSVK 188
KRQDYY A+A+EV +D G P RAK Y++ KD EHT +L++RGLPFS
Sbjct: 132 KRQDYYKAIANEV-------SDARGGSPRRAPRAKSYDEGKDSAEHTGVLRLRGLPFSAG 184
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
K +I++FFKD+ + ED +HI +G+ TGEA+VEF S E++K AM KD+MT+GSRY+EL
Sbjct: 185 KDDIMEFFKDFVLSEDSVHITMNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIEL 244
Query: 249 FPSTPDEARRAESRSR 264
FPS+ +E A +R R
Sbjct: 245 FPSSIEELEEAVTRGR 260
>gi|356527218|ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine
max]
Length = 260
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/257 (55%), Positives = 182/257 (70%), Gaps = 16/257 (6%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG E+ +KRQR ++P F +S+ S F PYGY PPPP PVVRLRGLPF+CT
Sbjct: 12 DGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSPYGYVSQPPPPPF-PVVRLRGLPFDCT 70
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF GLDIVDVL V+K G+F+GE F V P+QV+FALQR+RQNMGRRYVEVFR
Sbjct: 71 ETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 130
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPP---PSRAKRYND-KDQMEHTEILKMRGLPFSV 187
KRQ+YY A+A+EV +D G P SRAK Y++ KD EHT +L++RGLPFS
Sbjct: 131 KRQEYYKAIANEV-------SDARGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGLPFSA 183
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
K +I++FFKD+ + ED IHI +G+ +GEAY EF S E++K AM KD+MT+GSRY+E
Sbjct: 184 SKDDIMEFFKDFGLPEDSIHIIMNSEGRPSGEAYAEFASAEDSKAAMVKDRMTLGSRYIE 243
Query: 248 LFPSTPDEARRAESRSR 264
LFPS+P E A SR R
Sbjct: 244 LFPSSPGEMEEAISRGR 260
>gi|358248784|ref|NP_001239939.1| uncharacterized protein LOC100805177 [Glycine max]
gi|255644706|gb|ACU22855.1| unknown [Glycine max]
Length = 261
Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/257 (55%), Positives = 182/257 (70%), Gaps = 15/257 (5%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG E+ +KRQR ++P F +S+ S F PYGY PPPP FPVVRLRGLPF+CT
Sbjct: 12 DGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSPYGYVSQPPPPPPFPVVRLRGLPFDCT 71
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF GLDIVDVL V+K G+F+GE F V P+QV+FALQR+RQNMGRRYVEVFR
Sbjct: 72 ETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 131
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPP---PSRAKRYND-KDQMEHTEILKMRGLPFSV 187
KRQ+YY A+A+EV +D G P SRAK Y++ K+ EHT +L++RGLPFS
Sbjct: 132 KRQEYYKAIANEV-------SDARGGSPRRSASRAKSYDEGKESAEHTGVLRLRGLPFSA 184
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
K +I++FFKD+ + ED IHI +G+ +GEAY EF S E++K AM KD+MT+GSRY+E
Sbjct: 185 SKDDIMEFFKDFGLPEDSIHIIMNSEGRPSGEAYAEFESAEDSKAAMIKDRMTLGSRYIE 244
Query: 248 LFPSTPDEARRAESRSR 264
LFPS+ E A SR R
Sbjct: 245 LFPSSHGEMEEAISRGR 261
>gi|225435437|ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Vitis
vinifera]
Length = 258
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 176/257 (68%), Gaps = 18/257 (7%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG ++G KRQR+ + F S S F PY Y G PP FPVVRLRGLPF+C+
Sbjct: 12 DGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIG---QPPPFPVVRLRGLPFDCS 68
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF LDIVDVL V+KNGRF+GEAF V P+QVEFALQR+RQNMGRRYVEVFR
Sbjct: 69 EADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRS 128
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA--KRYND--KDQMEHTEILKMRGLPFSV 187
KRQ+YY A+A+EV +D G P A + ND K+ EHT +L++RGLPFS
Sbjct: 129 KRQEYYKAIANEV-------SDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFSA 181
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
K +I+ FFKD+ + ED IH+ +G+ TGEA+VEF + E++K AM KD+MT+GSRY+E
Sbjct: 182 SKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIE 241
Query: 248 LFPSTPDEARRAESRSR 264
LFPS+ +E A +R R
Sbjct: 242 LFPSSLEELDEAVARGR 258
>gi|77553600|gb|ABA96396.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
Length = 235
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/214 (58%), Positives = 161/214 (75%), Gaps = 5/214 (2%)
Query: 35 AVSSSASGFQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV 90
A +++ +QPYG G +FP VRLRGLPF+C D+DICKFF GLDIVD LLV
Sbjct: 5 AAGGTSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLV 64
Query: 91 NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIY 150
+KNGRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EVN G +
Sbjct: 65 HKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFF 124
Query: 151 DNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
D+++ H PPP K DK ME+TE+LK+RGLP+S +I++FF +Y++ ++ +HI
Sbjct: 125 DSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIV 184
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGS 243
RPDGKATGEAYVEF + E K AMCKDKMTIG+
Sbjct: 185 YRPDGKATGEAYVEFPTAEVVKTAMCKDKMTIGT 218
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF +I +FF I++ + +G+ TGEA+V F S +A+ A+ ++
Sbjct: 35 VRLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFPSAMQAEFALHRN 91
Query: 238 KMTIGSRYVELF 249
+ +G RYVE+F
Sbjct: 92 RQNMGRRYVEVF 103
>gi|255645750|gb|ACU23368.1| unknown [Glycine max]
Length = 260
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/257 (54%), Positives = 179/257 (69%), Gaps = 16/257 (6%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG E+ +KRQR ++P F +S+ S F PYGY PPPP PVVRLRGLPF+CT
Sbjct: 12 DGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSPYGYVSQPPPPPF-PVVRLRGLPFDCT 70
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF GLDIVDVL V+K G+F+GE F V P+QV+FALQ +RQNMGRRYVEVFR
Sbjct: 71 ETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQGNRQNMGRRYVEVFRS 130
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPP---PSRAKRYND-KDQMEHTEILKMRGLPFSV 187
KRQ+YY A+A+EV +D G P SRAK Y++ KD EHT +L++RGLPF
Sbjct: 131 KRQEYYKAIANEV-------SDARGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGLPFFA 183
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
K +I++FFKD+ + ED IHI +G+ GEAY EF S E++K AM KD+MT+GSRY+E
Sbjct: 184 SKDDIMEFFKDFGLPEDSIHIIMNSEGRPFGEAYAEFASAEDSKAAMVKDRMTLGSRYIE 243
Query: 248 LFPSTPDEARRAESRSR 264
LFPS+P E A SR R
Sbjct: 244 LFPSSPGEMEEAISRGR 260
>gi|168066869|ref|XP_001785353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663050|gb|EDQ49838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 256 bits (654), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 130/253 (51%), Positives = 172/253 (67%), Gaps = 22/253 (8%)
Query: 18 YEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICK 77
YEVGSKRQR+++ G P G P S PVVRLRGLPFNC+D D+
Sbjct: 1 YEVGSKRQRLID-----------GGSSPVLLQG---HPRSLPVVRLRGLPFNCSDSDVFD 46
Query: 78 FFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYY 137
FFAGLD+VDVLLV NGRFSGEA+VVF P+QV++ALQ++R N+GRRY+EVFRCK+QDYY
Sbjct: 47 FFAGLDVVDVLLVRMNGRFSGEAYVVFGAPVQVDYALQKNRHNIGRRYIEVFRCKKQDYY 106
Query: 138 NAVASEVNYEGIYDNDF--------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKK 189
+AVA+EV D+ S R N KD + T ++K+RGLPFS K
Sbjct: 107 HAVAAEVADTRCIDSTLPLHVLNNNSSSASAKAPSRNNTKDHLNFTGVVKLRGLPFSATK 166
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
S+++ FF+++++ ++ +HI DG+ TGEA+V+F S +AK AM KDKMT+GSRYVE+F
Sbjct: 167 SDVMDFFREFELHDEHVHIMLHSDGRTTGEAFVDFGSASKAKSAMNKDKMTMGSRYVEIF 226
Query: 250 PSTPDEARRAESR 262
PS+ +EA RA +R
Sbjct: 227 PSSREEATRAATR 239
>gi|449448717|ref|XP_004142112.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
gi|449502606|ref|XP_004161690.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 260
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/257 (51%), Positives = 175/257 (68%), Gaps = 18/257 (7%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG E+G+KRQR+++ + +S SGF PY Y PP FPVVRLRGLPF+C
Sbjct: 14 DGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAY---VNQPPPFPVVRLRGLPFDCM 70
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF GLDIVD+L V+KNG+F+GE F V P+QV+FALQR+RQNMGRRYVE+FR
Sbjct: 71 ETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRS 130
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKR--YND--KDQMEHTEILKMRGLPFSV 187
RQ+YY AVA+EV D G P A R ND KD EHT +L++RGLP+S
Sbjct: 131 NRQEYYKAVANEV-------FDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSA 183
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
K +I+ FFK + + ED IH+ +G+ +GEA+VEF + +++K AM KD+MT+GSRY+E
Sbjct: 184 GKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIE 243
Query: 248 LFPSTPDEARRAESRSR 264
LFPS+ +E A SR R
Sbjct: 244 LFPSSHEELDEAISRGR 260
>gi|357460387|ref|XP_003600475.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355489523|gb|AES70726.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 259
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 177/256 (69%), Gaps = 15/256 (5%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF---QPYGYGGGFPPPPSFPVVRLRGLPFNCTD 72
DG E+ SKRQR ++ F S +S PYGY PPPP PVVRLRGLPF+CT+
Sbjct: 12 DGREMASKRQRTVDAGSSFYGSPGSSYMYNPSPYGYVSQPPPPPF-PVVRLRGLPFDCTE 70
Query: 73 IDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
D+ +FF GLDIVDVL V+K G+FSGE F V P+QV+FALQR+RQN+GRRYVEVFR K
Sbjct: 71 TDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQNIGRRYVEVFRSK 130
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPP---PSRAKRYND-KDQMEHTEILKMRGLPFSVK 188
RQ+YY A+A+EV +D G P RAK Y++ KD EHT +L++RGLPFS
Sbjct: 131 RQEYYKAIANEV-------SDARGGSPRRSAPRAKSYDEGKDSAEHTGVLRLRGLPFSAN 183
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
K +I+ FFK+Y + ED IHI +G+ +GEAYVEF + +++K AM KD+MT+GSRY+EL
Sbjct: 184 KDDIMDFFKEYVLSEDSIHIVMNSEGRPSGEAYVEFENADDSKAAMAKDRMTLGSRYIEL 243
Query: 249 FPSTPDEARRAESRSR 264
FPST E A SR R
Sbjct: 244 FPSTHGEMEDAISRGR 259
>gi|226501122|ref|NP_001148833.1| RNA binding protein [Zea mays]
gi|195622468|gb|ACG33064.1| RNA binding protein [Zea mays]
Length = 268
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 139/262 (53%), Positives = 174/262 (66%), Gaps = 39/262 (14%)
Query: 8 ILGSGGVSDGYEVGSKRQRMM-EPNPYFAVSSS--------------------ASGFQPY 46
++G GVSDGYE GSKR RMM E NPYFAV++ A G
Sbjct: 1 MMGGWGVSDGYE-GSKRTRMMMESNPYFAVNAGSPLDVSKRSRIVEPGPPYFGAMGSNTG 59
Query: 47 GYGGGFPPP---------------PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN 91
G GGF P +FP VRLRGLPF+C DIDICKFF GLDIVD LLVN
Sbjct: 60 GASGGFYQPFNSSNLAGAGASTGIQNFPGVRLRGLPFDCNDIDICKFFVGLDIVDCLLVN 119
Query: 92 KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD 151
KNGRF+GEAFVVF +Q EFAL R+RQNMGRRYVEVFRCK+Q+YY+A+A+EV+ G ++
Sbjct: 120 KNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKKQEYYSAIANEVSQGGYFE 179
Query: 152 NDFHGSPPPSRAKRY--NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
+++ S PP R + DK ME+TE+LK+RGLP+S +I++FF +Y++ E+ +HIA
Sbjct: 180 SEYRRSSPPPRPPKKPAEDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIA 239
Query: 210 CRPDGKATGEAYVEFVSVEEAK 231
R DGKATGEA+VEF + E AK
Sbjct: 240 IRSDGKATGEAFVEFPTAEVAK 261
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF +I +FF I++ + +G+ TGEA+V F + + + A+ ++
Sbjct: 89 VRLRGLPFDCNDIDICKFFVGLDIVD---CLLVNKNGRFTGEAFVVFPTAMQTEFALHRN 145
Query: 238 KMTIGSRYVELF 249
+ +G RYVE+F
Sbjct: 146 RQNMGRRYVEVF 157
>gi|297746312|emb|CBI16368.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/253 (50%), Positives = 166/253 (65%), Gaps = 33/253 (13%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG ++G KRQR+ + F S S F PY Y G PP FPVVRLRGLPF+C+
Sbjct: 12 DGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIG---QPPPFPVVRLRGLPFDCS 68
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF LDIVDVL V+KNGRF+GEAF V P+QVEFALQR+RQNMGRRYVEVFR
Sbjct: 69 EADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVFRS 128
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSE 191
KRQ+YY A+A+EV +D G +L++RGLPFS K +
Sbjct: 129 KRQEYYKAIANEV-------SDTRGG-------------------VLRLRGLPFSASKED 162
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
I+ FFKD+ + ED IH+ +G+ TGEA+VEF + E++K AM KD+MT+GSRY+ELFPS
Sbjct: 163 IMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPS 222
Query: 252 TPDEARRAESRSR 264
+ +E A +R R
Sbjct: 223 SLEELDEAVARGR 235
>gi|388504640|gb|AFK40386.1| unknown [Medicago truncatula]
Length = 259
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 175/256 (68%), Gaps = 15/256 (5%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF---QPYGYGGGFPPPPSFPVVRLRGLPFNCTD 72
DG E+ SKRQR ++ F S +S PYGY PPPP PVVRLRGLPF+CT+
Sbjct: 12 DGREMASKRQRTVDAGSSFYGSPGSSYMYNPSPYGYVSQPPPPPF-PVVRLRGLPFDCTE 70
Query: 73 IDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
D+ +FF GLDIVDVL V+K G+FSGE F V P+QV+FALQR+RQN+GRRYVEVFR K
Sbjct: 71 TDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQNIGRRYVEVFRSK 130
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPP---PSRAKRYND-KDQMEHTEILKMRGLPFSVK 188
RQ+YY A+A+EV +D G P RAK Y++ KD EHT +L++RGLPF
Sbjct: 131 RQEYYKAIANEV-------SDARGGSPRRSAPRAKPYDEGKDSAEHTGVLRLRGLPFFAN 183
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
K +I+ FFK+Y + ED IHI +G+ GEAYVEF + +++K AM KD+MT+GSRY+EL
Sbjct: 184 KDDIMDFFKEYVLSEDSIHIVMNSEGRPFGEAYVEFENADDSKAAMAKDRMTLGSRYIEL 243
Query: 249 FPSTPDEARRAESRSR 264
FPST E A SR R
Sbjct: 244 FPSTHGEMEDAISRGR 259
>gi|82621148|gb|ABB86262.1| unknown [Solanum tuberosum]
Length = 364
Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/270 (48%), Positives = 177/270 (65%), Gaps = 23/270 (8%)
Query: 5 RGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQ----------PYGYGGGFPP 54
RG + SG D E+G KRQR+M+ + + S + Y Y G
Sbjct: 4 RGNYMDSG---DAREMGFKRQRIMDQGSSYYATPPGSSYMYNPPPPPPPPSYSYHG---Q 57
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
PP FPVVRLRGLPF+C++ +I F GLD+VDVLLV+K GRF+GEA+ V P+QV+FAL
Sbjct: 58 PPPFPVVRLRGLPFDCSETEIADFLHGLDVVDVLLVHKGGRFTGEAYCVLGYPLQVDFAL 117
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
QR+RQN+GRRYVEVFR K+++YY A+A+EV YD+ GS P +R+ K EH
Sbjct: 118 QRNRQNIGRRYVEVFRSKKEEYYKAIANEV-----YDSR-GGSVPRARSAD-ESKTLPEH 170
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
T +L +RGLPFS K +I+ FFKD+++ E IHI +G+ TGEA+VEF S ++++ AM
Sbjct: 171 TGVLWLRGLPFSASKEDIIDFFKDFELPEKSIHITATFEGRPTGEAFVEFASADDSRAAM 230
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSR 264
KD+MTIG+RY+ELF S+ +E A SR R
Sbjct: 231 AKDRMTIGNRYIELFASSSEELEEAVSRGR 260
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 19/213 (8%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVE 111
P V+ LRGLPF+ + DI FF ++ + + GR +GEAFV FA
Sbjct: 168 PEHTGVLWLRGLPFSASKEDIIDFFKDFELPEKSIHITATFEGRPTGEAFVEFASADDSR 227
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
A+ +DR +G RY+E+F ++ AV+ E K + +D
Sbjct: 228 AAMAKDRMTIGNRYIELFASSSEELEEAVSRGRVLE----------------KPVDGRDP 271
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
E T IL+MRGLPFS K +I+ FFKD+ + ED IH+ DG+ TGEA+VEF S ++AK
Sbjct: 272 NEVTSILRMRGLPFSAGKDDIMDFFKDFALTEDAIHVTFLSDGRPTGEAFVEFASTDDAK 331
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
A+ KD+MT+GSRYVELFPS+ ++ A SR R
Sbjct: 332 AALAKDRMTLGSRYVELFPSSIEDMNHAISRGR 364
>gi|297830788|ref|XP_002883276.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
gi|297329116|gb|EFH59535.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
Length = 356
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 179/289 (61%), Gaps = 47/289 (16%)
Query: 16 DGYEVGSKRQRMME---PNPYFAVSSSASGF--QPYGYGGGFPPPPSFPVVRLRGLPFNC 70
DG E+G KRQRM++ P P++ SGF PYG+ PPPP P VRLRGLPF+C
Sbjct: 75 DGREMGPKRQRMIDQGPPGPFYG-PHPGSGFMYNPYGFVAPPPPPPF-PAVRLRGLPFDC 132
Query: 71 TDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
+ID+ +FF GLD+VDVL V+KN + +GEAF V P+QV+FALQ++RQNMGRRYVEVFR
Sbjct: 133 AEIDVVEFFHGLDVVDVLFVHKNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFR 192
Query: 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPP------------------------------ 160
+Q+YY A+A+EV ++ HG
Sbjct: 193 STKQEYYKAIANEVA-----ESRVHGMASGGGGGGGGGTGGGNGGGGGGGGGRISGGSSP 247
Query: 161 ----SRAKRYND-KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
RA+ +D K+ +EHT L++RGLPFS K +I+ FFKD+++ ED +H+ +G+
Sbjct: 248 RRHVQRARSSDDGKEDIEHTGTLRLRGLPFSAGKEDILDFFKDFELSEDSVHVTVNGEGR 307
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
TGEA+VEF + EE++ AM KD+ T+GSRY+ELFPS+ +E A SR R
Sbjct: 308 PTGEAFVEFRNAEESRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 356
>gi|334185502|ref|NP_188725.3| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332642915|gb|AEE76436.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 292
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 130/294 (44%), Positives = 182/294 (61%), Gaps = 45/294 (15%)
Query: 10 GSGGVSDGYEVGSKRQRMME---PNPYFAVS-SSASGFQPYGYGGGFPPPPSFPVVRLRG 65
G G DG E+G KRQRM++ P P++ SS + PYG+ PPPP P VRLRG
Sbjct: 5 GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPF-PAVRLRG 63
Query: 66 LPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125
LPF+C ++D+ +FF GLD+VDVL V++N + +GEAF V P+QV+FALQ++RQNMGRRY
Sbjct: 64 LPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRY 123
Query: 126 VEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP------------------------- 160
VEVFR +Q+YY A+A+EV ++ HG
Sbjct: 124 VEVFRSTKQEYYKAIANEVA-----ESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRIS 178
Query: 161 ---------SRAKRYND-KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210
RA+ +D K+ +EHT IL++RGLPFS K +I+ FFKD+++ ED +H+
Sbjct: 179 GGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTV 238
Query: 211 RPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
+G+ TGEA+VEF + E+++ AM KD+ T+GSRY+ELFPS+ +E A SR R
Sbjct: 239 NGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292
>gi|255071701|ref|XP_002499525.1| predicted protein [Micromonas sp. RCC299]
gi|226514787|gb|ACO60783.1| predicted protein [Micromonas sp. RCC299]
Length = 251
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 147/234 (62%), Gaps = 27/234 (11%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
FPVVRLRGLPFN + DI +FF GLD VDVL+V ++GR +GEA+V+FA P+Q++FALQ++
Sbjct: 18 FPVVRLRGLPFNAGEFDILEFFQGLDPVDVLIVRRDGRATGEAYVLFANPMQMDFALQKN 77
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG--------------------- 156
R MGRRY+EVFR K+QDYY AVA VN + DF+G
Sbjct: 78 RGPMGRRYIEVFRSKKQDYYYAVAHAVNEPTPHGTDFYGGDNGLASGAGHLAHVAGVGGP 137
Query: 157 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD------YKIIEDKIHIAC 210
+PP + EHT +LKMRGLPFS K +I+ F+ D + D IHI
Sbjct: 138 APPVPHGAPAAVRPPQEHTGVLKMRGLPFSATKDDIITFYDDPALSVTAPLTHDSIHIVT 197
Query: 211 RPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
DG+ +G A+VEF S E+AK AM +D+ T+GSRYVELFPS+ +EA RA + R
Sbjct: 198 SLDGRPSGMAFVEFASAEDAKAAMSRDRCTMGSRYVELFPSSREEATRAATSGR 251
>gi|9294416|dbj|BAB02497.1| unnamed protein product [Arabidopsis thaliana]
Length = 278
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/284 (44%), Positives = 177/284 (62%), Gaps = 45/284 (15%)
Query: 20 VGSKRQRMME---PNPYFAVS-SSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDI 75
+G KRQRM++ P P++ SS + PYG+ PPPP P VRLRGLPF+C ++D+
Sbjct: 1 MGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPF-PAVRLRGLPFDCAELDV 59
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
+FF GLD+VDVL V++N + +GEAF V P+QV+FALQ++RQNMGRRYVEVFR +Q+
Sbjct: 60 VEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQE 119
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPP----------------------------------S 161
YY A+A+EV ++ HG
Sbjct: 120 YYKAIANEVA-----ESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQ 174
Query: 162 RAKRYND-KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RA+ +D K+ +EHT IL++RGLPFS K +I+ FFKD+++ ED +H+ +G+ TGEA
Sbjct: 175 RARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEA 234
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
+VEF + E+++ AM KD+ T+GSRY+ELFPS+ +E A SR R
Sbjct: 235 FVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 278
>gi|334188661|ref|NP_001190629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010758|gb|AED98141.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 158
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/161 (66%), Positives = 136/161 (84%), Gaps = 6/161 (3%)
Query: 108 IQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---SRAK 164
+QVE ALQRDR NMGRRYVEVFRC +QDYYNAVA+E EG Y+ + SPPP SRAK
Sbjct: 1 MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 57
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
R+++K+++E+TE+LKMRGLP+SV K +I++FF YK+I+ ++ + CRPDGKATGEA+VEF
Sbjct: 58 RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 117
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ EEA+RAM KDKM+IGSRYVELFP+T +EARRAE+RSRQ
Sbjct: 118 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 19/103 (18%)
Query: 46 YGYGGGFPPPPSFP----------------VVRLRGLPFNCTDIDICKFFAGLDIVD--- 86
Y Y PPP+ P V+++RGLP++ I +FF+G ++
Sbjct: 40 YEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRV 99
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
++ +G+ +GEAFV F + A+ +D+ ++G RYVE+F
Sbjct: 100 QVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 142
>gi|303278009|ref|XP_003058298.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460955|gb|EEH58249.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 230
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 147/220 (66%), Gaps = 10/220 (4%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQ 109
GGF FPVVRLRGLPFN ++ D+ +FF GL+ VDVL+V ++GR +GEA+VV A +
Sbjct: 16 GGFGVEKVFPVVRLRGLPFNASEYDVQEFFQGLEPVDVLIVRRDGRATGEAYVVLANQML 75
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
+E ALQ++R MGRRY+EVFR K+QDYY+AV+ VN + D+ Y++
Sbjct: 76 MEVALQKNRGPMGRRYIEVFRSKKQDYYHAVSIAVN-----EPDYGNGNGGQGGGYYDNG 130
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK-----IIEDKIHIACRPDGKATGEAYVEF 224
EHT +LK+RGLPFS K +I+ FF D ++ D IHI DG+ +G A+VEF
Sbjct: 131 PLAEHTGVLKLRGLPFSATKDDIITFFDDKSLGVSPLVHDSIHIVLSVDGRPSGVAFVEF 190
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
VS E+AK AM KD+ ++G+RYVELFPS+ +EA RA + R
Sbjct: 191 VSAEDAKTAMIKDRSSMGTRYVELFPSSREEATRAATSGR 230
>gi|147832351|emb|CAN73277.1| hypothetical protein VITISV_031233 [Vitis vinifera]
Length = 260
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 145/257 (56%), Gaps = 53/257 (20%)
Query: 16 DGYEVGSKRQRMMEPNPYFAVSSSASGF----QPYGYGGGFPPPPSFPVVRLRGLPFNCT 71
DG ++G KRQR+ + F S S F PY Y G PP FPVVRLRGLPF+C+
Sbjct: 49 DGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASPYSYIG---QPPPFPVVRLRGLPFDCS 105
Query: 72 DIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+ D+ +FF LDIVDVL V+KNGR
Sbjct: 106 EADVAEFFHSLDIVDVLFVHKNGR-----------------------------------S 130
Query: 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA--KRYND--KDQMEHTEILKMRGLPFSV 187
KRQ+YY A+A+EV+ D G P A + ND K+ EHT +L++RGLPFS
Sbjct: 131 KRQEYYKAIANEVS-------DTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFSA 183
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
K +I+ FFKD+ + ED IH+ +G+ TGEA+VEF + E++K AM KD+MT+GSRY+E
Sbjct: 184 SKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIE 243
Query: 248 LFPSTPDEARRAESRSR 264
LFPS+ +E A +R R
Sbjct: 244 LFPSSLEELDEAVARGR 260
>gi|388507286|gb|AFK41709.1| unknown [Lotus japonicus]
Length = 163
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 96/105 (91%)
Query: 161 SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
S K + DK+QME+TEILKMRGLPF+V KS+IV FFKDYK+IED++HIACRPDGKATGEA
Sbjct: 59 SATKSFGDKEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEA 118
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
YVEFVS +EAKRAM KDKM IGSRYVELFPSTPDEARRAESRSRQ
Sbjct: 119 YVEFVSPDEAKRAMSKDKMMIGSRYVELFPSTPDEARRAESRSRQ 163
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPF 68
+G V+D ++ R R++ V S+ F G ++++RGLPF
Sbjct: 32 IGRTWVADTWKCSGVRSRII--TMLLLVRSATKSF------GDKEQMEYTEILKMRGLPF 83
Query: 69 NCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125
T I FF +++ + +G+ +GEA+V F P + + A+ +D+ +G RY
Sbjct: 84 AVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMSKDKMMIGSRY 143
Query: 126 VEVF 129
VE+F
Sbjct: 144 VELF 147
>gi|299472433|emb|CBN77621.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 305
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 129/217 (59%), Gaps = 11/217 (5%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQR 116
FP VRLRGLPF T D+ +FF GL +DV++V + +GR +GEA VV ++++ AL R
Sbjct: 89 FPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSR 148
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ----- 171
D+Q+MGRRY+E+F+ KR DYY+AV ++ + + G
Sbjct: 149 DKQHMGRRYIEIFQSKRMDYYSAVVGQLQSQNMGGMQRQGGGGMGHGSMGGGGAGGLGPD 208
Query: 172 -----MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ HT +++MRGLPFS K +++ FF+ + ED I R DG+ TGEA+V F S
Sbjct: 209 GMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSS 268
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E++ AM ++ +G+RYVELF STP+E R +R+
Sbjct: 269 PAESEAAMSRNGNHMGTRYVELFASTPEEIVRHMNRT 305
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
Y+ +D + +++RGLPF ++++FF+ ++ + + R DG+ GEA V
Sbjct: 80 YSLEDVLGPFPCVRLRGLPFEATIDDVLRFFQG--LVPLDVVMVTRADGRGAGEAIVVLP 137
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPS 251
++ E + A+ +DK +G RY+E+F S
Sbjct: 138 NLMEMQMALSRDKQHMGRRYIEIFQS 163
>gi|388499278|gb|AFK37705.1| unknown [Medicago truncatula]
Length = 94
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/94 (82%), Positives = 86/94 (91%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
M++TEILKMRGLPF V KS+I+ FFKDYK+IE ++HIACRPDGK TGEAYVEFVS +EAK
Sbjct: 1 MDYTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAK 60
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
RAM KDKMTIGSRYVELFP TPDEARRAESRSRQ
Sbjct: 61 RAMFKDKMTIGSRYVELFPFTPDEARRAESRSRQ 94
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++++RGLPF T I FF +++ + +G+ +GEA+V F P + + A+ +
Sbjct: 6 ILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAKRAMFK 65
Query: 117 DRQNMGRRYVEVF 129
D+ +G RYVE+F
Sbjct: 66 DKMTIGSRYVELF 78
>gi|125541750|gb|EAY88145.1| hypothetical protein OsI_09580 [Oryza sativa Indica Group]
Length = 226
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 107/160 (66%), Gaps = 27/160 (16%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+F VRL GLPF+C+D+DICKFF GLDIVD LL +KNG F+ EAFVVF +Q EFAL R
Sbjct: 20 NFSGVRLLGLPFDCSDLDICKFFVGLDIVDCLLDHKNGCFTDEAFVVFPSAMQAEFALHR 79
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+RQNMGRRYVEVFRCK+Q+YY+++A+E +PP +
Sbjct: 80 NRQNMGRRYVEVFRCKKQEYYSSIAAEKR-----------TPP----------------D 112
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA 216
+LK+RGLP+ +I++FF +Y++ E+ +H A R DGKA
Sbjct: 113 VLKLRGLPYFTTAEDIIKFFVEYELTEENVHTAYRLDGKA 152
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++ GLPF +I +FF I++ + +G T EA+V F S +A+ A+ ++
Sbjct: 24 VRLLGLPFDCSDLDICKFFVGLDIVDCLLD---HKNGCFTDEAFVVFPSAMQAEFALHRN 80
Query: 238 KMTIGSRYVELF 249
+ +G RYVE+F
Sbjct: 81 RQNMGRRYVEVF 92
>gi|219111791|ref|XP_002177647.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410532|gb|EEC50461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 245
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 45/245 (18%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
FP RLR LP++ DI F GL ++DV++ ++ G+AFV+FA P+ + ALQRD
Sbjct: 2 FPCARLRNLPYDAALEDILILFQGLVVIDVVISSQ-----GDAFVIFANPMDFQMALQRD 56
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASE-------------------VNY--------EGIY 150
RQ +GRR+VE+ R +YY+A+A + +N EG+
Sbjct: 57 RQTIGRRFVEIVAATRSEYYDAIAKKSAGESASAMASLWGGSQGGMNSLPPQGGYGEGMQ 116
Query: 151 DNDFHGSPP-------------PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFK 197
+ G P P + + EHT L++RGLPFS + +I +FF
Sbjct: 117 HHGLLGMGPRLTGMSRQGGIHTPLQKRTGGGIQVGEHTGFLRVRGLPFSATRDDIFKFFL 176
Query: 198 DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
Y ++ + + R DG+ATGEAY+ F + +++KRAM + +GSRYVELF S DE
Sbjct: 177 GYNPTQESVVLTYRNDGRATGEAYIGFATADDSKRAMELHRRVMGSRYVELFISNKDEHG 236
Query: 258 RAESR 262
RA +R
Sbjct: 237 RALAR 241
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 17 GYEVGSKRQRMMEPNPYFAVSSSASGFQP---YGYGGGFPPPPSFPVVRLRGLPFNCTDI 73
GY G + ++ P S G GGG +R+RGLPF+ T
Sbjct: 110 GYGEGMQHHGLLGMGPRLTGMSRQGGIHTPLQKRTGGGIQVGEHTGFLRVRGLPFSATRD 169
Query: 74 DICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
DI KFF G + VL +GR +GEA++ FA + A++ R+ MG RYVE+F
Sbjct: 170 DIFKFFLGYNPTQESVVLTYRNDGRATGEAYIGFATADDSKRAMELHRRVMGSRYVELFI 229
Query: 131 CKRQDYYNAVA 141
+ ++ A+A
Sbjct: 230 SNKDEHGRALA 240
>gi|168037998|ref|XP_001771489.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677216|gb|EDQ63689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 116/206 (56%), Gaps = 6/206 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ T+ DI FF GL++ V+ VN GR +G+A+V FA AL+R
Sbjct: 22 VVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALER 81
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND---FHGSPPPSRAKRYNDKDQME 173
+RQ++G RY+EVF+ D A+ G+ G + + M
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGALRMVGRGSGVVSGSGAVASGGILNTGIPGMSGNPDMR 141
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+T +++MRG+P+S ++I FFK +++ D I + DG+ TGEA+VEFV+ E A RA
Sbjct: 142 YTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARA 201
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRA 259
M + +GSRYVELF ST E A
Sbjct: 202 MQLHREPMGSRYVELFRSTKGEMMTA 227
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 32/227 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR+RG+P++CT DI FF G+ +V L + +GR +GEAFV F A+Q
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQL 204
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEV----------------------------NYEG 148
R+ MG RYVE+FR + + AV + G
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTG 264
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S D EH I KMRGLP++ + EI+ FF+ Y + + IHI
Sbjct: 265 MNLAAVQAAGLGSMTVPQGLSDTSEHVCI-KMRGLPYNAGQREIMDFFEGYSFLPNGIHI 323
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ TGEA+VEF+S +EA+RAM + + IGSRY+ELF +T E
Sbjct: 324 VMGATDRPTGEAFVEFMSSDEAQRAMERHRQNIGSRYIELFRATKSE 370
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 60/90 (66%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ + ++++RGLPFS +S+I FFK ++ D + I G++TG+AYV+F S E
Sbjct: 15 DELKRSNVVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAEL 74
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +A+ +++ IGSRY+E+F P + + A
Sbjct: 75 ANKALERNRQHIGSRYIEVFKGHPADMQGA 104
>gi|302805965|ref|XP_002984733.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
gi|300147715|gb|EFJ14378.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
Length = 483
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 9/201 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ T++DI +FF GLD+ V+ VN GR +G+A+V FA +L+R
Sbjct: 22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLER 81
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDN-DFHGSPPPSRAKRYNDKDQMEH 174
+RQ++G RY+EVF+ D A+ + G Y G+ P A M
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAMRMAGRGSSGAYGAAGLQGTGIPGMA----GNPDMRF 137
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
T +++MRG+P+S ++I+ FFK ++ D I + DG+ TGEA+VEF++ E A RAM
Sbjct: 138 TGVVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAM 197
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
+ +GSRYVELF ST E
Sbjct: 198 QLHREPMGSRYVELFKSTKGE 218
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 25/241 (10%)
Query: 40 ASGFQPYGYGG--GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNG 94
A+G Q G G G P VVR+RG+P++CT DI FF G+ + L + +G
Sbjct: 118 AAGLQGTGIPGMAGNPDMRFTGVVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADG 177
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
R +GEAFV F A+Q R+ MG RYVE+F+ + + +V ++ + G+ +
Sbjct: 178 RPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSP 237
Query: 155 HGS--PPPSRAKRYNDKD------------------QMEHTEILKMRGLPFSVKKSEIVQ 194
GS P Y + + +KMRGLP++ EI +
Sbjct: 238 VGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITE 297
Query: 195 FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 254
FF+ Y+I+ + I++ + TGEA+VEF+S +EA+RAM + + IGSRY+ELF +T
Sbjct: 298 FFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMERHRNNIGSRYIELFRATKS 357
Query: 255 E 255
E
Sbjct: 358 E 358
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 59/90 (65%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ + ++++RGLPFS + +I +FF+ + D I I G++TG+AYV+F + E
Sbjct: 15 DELKRSNVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAEL 74
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +++ +++ IGSRY+E+F P + + A
Sbjct: 75 ANKSLERNRQHIGSRYIEVFKGHPADMQGA 104
>gi|302794117|ref|XP_002978823.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
gi|300153632|gb|EFJ20270.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
Length = 478
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 9/201 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ T++DI +FF GLD+ V+ VN GR +G+A+V FA +L+R
Sbjct: 22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLER 81
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDN-DFHGSPPPSRAKRYNDKDQMEH 174
+RQ++G RY+EVF+ D A+ + G Y G+ P A M
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAMRMAGRGSSGAYGAAGLQGTGIPGMA----GNPDMRF 137
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
T +++MRG+P+S ++I+ FFK ++ D I + DG+ TGEA+VEF++ E A RAM
Sbjct: 138 TGVVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAM 197
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
+ +GSRYVELF ST E
Sbjct: 198 QLHREPMGSRYVELFKSTKGE 218
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 25/241 (10%)
Query: 40 ASGFQPYGYGG--GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNG 94
A+G Q G G G P VVR+RG+P++CT DI FF G+ + L + +G
Sbjct: 118 AAGLQGTGIPGMAGNPDMRFTGVVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADG 177
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
R +GEAFV F A+Q R+ MG RYVE+F+ + + +V ++ + G+ +
Sbjct: 178 RPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSP 237
Query: 155 HGS--PPPSRAKRYNDKD------------------QMEHTEILKMRGLPFSVKKSEIVQ 194
GS P Y + + +KMRGLP++ EI +
Sbjct: 238 VGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITE 297
Query: 195 FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 254
FF+ Y+I+ + I++ + TGEA+VEF+S +EA+RAM + + IGSRY+ELF +T
Sbjct: 298 FFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMERHRNNIGSRYIELFRATKS 357
Query: 255 E 255
E
Sbjct: 358 E 358
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 59/90 (65%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ + ++++RGLPFS + +I +FF+ + D I I G++TG+AYV+F + E
Sbjct: 15 DELKRSNVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAEL 74
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +++ +++ IGSRY+E+F P + + A
Sbjct: 75 ANKSLERNRQHIGSRYIEVFKGHPADMQGA 104
>gi|361069401|gb|AEW09012.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172127|gb|AFG69420.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172129|gb|AFG69421.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172131|gb|AFG69422.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172133|gb|AFG69423.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172135|gb|AFG69424.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172137|gb|AFG69425.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172139|gb|AFG69426.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172141|gb|AFG69427.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172143|gb|AFG69428.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172145|gb|AFG69429.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172147|gb|AFG69430.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172149|gb|AFG69431.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172151|gb|AFG69432.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172153|gb|AFG69433.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172155|gb|AFG69434.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172157|gb|AFG69435.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172159|gb|AFG69436.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172161|gb|AFG69437.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
Length = 109
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 83/111 (74%), Gaps = 3/111 (2%)
Query: 101 FVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP 160
FVVF P+QV+FALQRDRQNMGRRY+EVFRCK+QDYYNA+A+EVN D+ +PP
Sbjct: 1 FVVFGAPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAIAAEVNEPKGADD---PAPPS 57
Query: 161 SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211
S +K +DKD MEHT ILK+RGLPFSV K +I+ FF DY + E +HI
Sbjct: 58 SFSKGSSDKDHMEHTGILKLRGLPFSVSKRDIIDFFVDYDLSETNVHIVTH 108
>gi|222615465|gb|EEE51597.1| hypothetical protein OsJ_32850 [Oryza sativa Japonica Group]
Length = 340
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 97/153 (63%), Gaps = 35/153 (22%)
Query: 7 AILGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSAS 41
A++G GGVSDGYE GSKR RM+E NPYFAV+ SSA+
Sbjct: 137 AMMGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAA 195
Query: 42 G-----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK 92
G +QPYG G +FP VRLRGLPF+C D+DI KFF GLDIVD LLV+K
Sbjct: 196 GGTSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHK 255
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125
NGRF+GEAFVVF +Q EFAL R+RQNMGRR+
Sbjct: 256 NGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRW 288
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 142/296 (47%), Gaps = 67/296 (22%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVS-------------------------SSASG- 42
+G GGVSDGYE GSKR RM+E NPYFAV+ SSA+G
Sbjct: 1 MGGGGVSDGYE-GSKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGG 59
Query: 43 ----FQPYGY----GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG 94
+QPYG G +FP VRLRGLPF+C D+DICKFF GLDIVD LLV+KNG
Sbjct: 60 TSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNG 119
Query: 95 RFSGEAFVVFAGPIQVEFAL------------QRDRQNMGRRYVEVFRCKRQD------- 135
RF+GEAFVVF +Q E + +R R Y V D
Sbjct: 120 RFTGEAFVVFPSAMQAEAMMGGGGVSDGYEGSKRPRMIESNPYFAVTAGSPLDVSKRARM 179
Query: 136 ------YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKK 189
Y+ A+ S +G+ P +++ +++RGLPF
Sbjct: 180 MEPAPPYFGAMGSSAAGGTSAFYQPYGANLPGAGA----NSAIQNFPGVRLRGLPFDCDD 235
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
+I +FF I++ + +G+ TGEA+V F S +A+ A+ +++ +G R+
Sbjct: 236 LDIFKFFVGLDIVD---CLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRW 288
>gi|168015582|ref|XP_001760329.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688343|gb|EDQ74720.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 24/215 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ ++ DI FF GL++ V+ VN GR +G+A+V FA AL+R
Sbjct: 22 VVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFATAELANKALER 81
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV------------ASEVNYEGIYDNDFHGSPPPSRAK 164
+RQ++G RY+EVF+ D A+ + V GI + G
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGALRMVGRGSGTVTGSGAVATGGILNTGIPG-------- 133
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
+ M +T +++MRG+P+S ++I FFK +++ D I + DG+ TGEA+VEF
Sbjct: 134 -MSGNPDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEF 192
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ E A RAM + +GSRYVELF ST E A
Sbjct: 193 ANEEIAARAMQLHREPMGSRYVELFRSTKGEMMTA 227
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 114/227 (50%), Gaps = 32/227 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR+RG+P++CT DI FF G+ +V L + +GR +GEAFV FA A+Q
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFANEEIAARAMQL 204
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEV----------------------------NYEG 148
R+ MG RYVE+FR + + AV + G
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTG 264
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S D EH I KMRGLP++ + EI+ FF+ Y I+ + IHI
Sbjct: 265 MNLAAVQAAGLGSMTGLQGLSDTSEHVCI-KMRGLPYNAGQREIMDFFEGYNILPNGIHI 323
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ TGEA+VEF+S +EA+RAM + + IGSRY+ELF +T E
Sbjct: 324 VMGATDRPTGEAFVEFISSDEAQRAMERHRQNIGSRYIELFRATKSE 370
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 60/90 (66%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ + ++++RGLPFS +S+I FFK ++ D + I G++TG+AYV+F + E
Sbjct: 15 DELKRSNVVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFATAEL 74
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +A+ +++ IGSRY+E+F P + + A
Sbjct: 75 ANKALERNRQHIGSRYIEVFKGHPADMQGA 104
>gi|431914602|gb|ELK15790.1| Heterogeneous nuclear ribonucleoprotein F [Pteropus alecto]
Length = 414
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F +G I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGATGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>gi|417400513|gb|JAA47194.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 414
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 116/203 (57%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F +G I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVAGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 110/257 (42%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMGRRYVEVF---------------------------------------------RCK 132
++ +G RY+EVF R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y S Y G+ D D RY D + Q +
Sbjct: 233 SGAYSTGYGSYEEYSGLSDGYGFTADLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 351 NMQHRYIELFLNSTTGA 367
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>gi|432960846|ref|XP_004086494.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 370
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 111/206 (53%), Gaps = 6/206 (2%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
PP VV LRGLPF+CT DI FF+GLD+V+ ++ + GR SGEAFV F
Sbjct: 163 PPAAEDGVVMLRGLPFSCTQDDILLFFSGLDVVENGITMVTDGRGRNSGEAFVQFTSQEV 222
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
ALQ+ R+ MG RYVEVF + + + + + G P + + + +
Sbjct: 223 AGKALQKHRELMGHRYVEVFPSRSSEIRSTWKRRSSLPPQSASPPAGRPASAPHRAVSPQ 282
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++ + MRGLPF +IV+FF Y + KI I CRPDG+ +GEA V F +
Sbjct: 283 SSEANSHFIHMRGLPFQASGEDIVKFFSPYVV--SKIMIECRPDGRTSGEADVYFSCHRD 340
Query: 230 AKRAMCKDKMTIGSRYVELF-PSTPD 254
A AM +D+ +G RY+ELF S PD
Sbjct: 341 AVAAMSRDRTNMGHRYIELFLNSAPD 366
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 125/278 (44%), Gaps = 60/278 (21%)
Query: 20 VGSKRQRMME-----------------PNPYFAVSSSAS-----GFQPYGYGGGFPPPPS 57
+GSKR+++ E PNP + + S G +PP P+
Sbjct: 3 IGSKRKQLPEKQSSPVLTDDSQRLASPPNPQVSWEETQSVEEKKSLLEGGDQEAYPPLPA 62
Query: 58 FP--------VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVF 104
+ +V++RGLP++CT ++ FF+ I D L +++ GR SG AF+
Sbjct: 63 YDQQESREVFIVQVRGLPWSCTVHELLHFFSDCRIRDGERGVHLTLDRLGRPSGRAFIEM 122
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK 164
V AL++ RQ +G RYVEV D + H +PP +
Sbjct: 123 EHEEDVSKALEKHRQYLGPRYVEVSEVTNSDAETILQ-------------HVAPPAAEDG 169
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
++ +RGLPFS + +I+ FF ++E+ I + G+ +GEA+V+F
Sbjct: 170 ------------VVMLRGLPFSCTQDDILLFFSGLDVVENGITMVTDGRGRNSGEAFVQF 217
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
S E A +A+ K + +G RYVE+FPS E R R
Sbjct: 218 TSQEVAGKALQKHRELMGHRYVEVFPSRSSEIRSTWKR 255
>gi|16876910|gb|AAH16736.1| HNRPF protein [Homo sapiens]
Length = 415
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVFR R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFRSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|62510677|sp|Q60HC3.3|HNRPF_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|52782291|dbj|BAD51992.1| heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
Length = 415
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PSAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|296220055|ref|XP_002756146.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Callithrix jacchus]
gi|403276785|ref|XP_003930066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Saimiri boliviensis boliviensis]
gi|403276787|ref|XP_003930067.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Saimiri boliviensis boliviensis]
Length = 415
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|332244100|ref|XP_003271210.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Nomascus leucogenys]
gi|332244102|ref|XP_003271211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Nomascus leucogenys]
gi|332244104|ref|XP_003271212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Nomascus leucogenys]
Length = 415
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|4826760|ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470397|ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470400|ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470402|ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470404|ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470406|ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|350537293|ref|NP_001233466.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|386781898|ref|NP_001247944.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|297686319|ref|XP_002820702.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Pongo abelii]
gi|297686321|ref|XP_002820703.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Pongo abelii]
gi|297686325|ref|XP_002820705.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Pongo abelii]
gi|297686327|ref|XP_002820706.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Pongo abelii]
gi|297686329|ref|XP_002820707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Pongo abelii]
gi|297686331|ref|XP_002820708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Pongo abelii]
gi|297686333|ref|XP_002820709.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Pongo abelii]
gi|297686337|ref|XP_002820711.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pongo abelii]
gi|297686339|ref|XP_002820712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pongo abelii]
gi|297686341|ref|XP_002820713.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pongo abelii]
gi|297686343|ref|XP_002820714.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pongo abelii]
gi|297686345|ref|XP_002820715.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Pongo abelii]
gi|395741477|ref|XP_003777588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|395741481|ref|XP_003777589.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|397491662|ref|XP_003816768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1 [Pan
paniscus]
gi|397491664|ref|XP_003816769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2 [Pan
paniscus]
gi|397491666|ref|XP_003816770.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3 [Pan
paniscus]
gi|397491668|ref|XP_003816771.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4 [Pan
paniscus]
gi|397491670|ref|XP_003816772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Pan
paniscus]
gi|397491672|ref|XP_003816773.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6 [Pan
paniscus]
gi|397491674|ref|XP_003816774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7 [Pan
paniscus]
gi|397491676|ref|XP_003816775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8 [Pan
paniscus]
gi|397491678|ref|XP_003816776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9 [Pan
paniscus]
gi|397491680|ref|XP_003816777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pan paniscus]
gi|397491682|ref|XP_003816778.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pan paniscus]
gi|397491684|ref|XP_003816779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pan paniscus]
gi|397491686|ref|XP_003816780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pan paniscus]
gi|426364503|ref|XP_004049345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Gorilla gorilla gorilla]
gi|426364505|ref|XP_004049346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Gorilla gorilla gorilla]
gi|426364507|ref|XP_004049347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Gorilla gorilla gorilla]
gi|426364509|ref|XP_004049348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Gorilla gorilla gorilla]
gi|1710628|sp|P52597.3|HNRPF_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; AltName: Full=Nucleolin-like protein
mcs94-1; Contains: RecName: Full=Heterogeneous nuclear
ribonucleoprotein F, N-terminally processed
gi|452048|gb|AAC37584.1| HnRNP F protein [Homo sapiens]
gi|12655155|gb|AAH01432.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|13279032|gb|AAH04254.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|15990432|gb|AAH15580.1| HNRPF protein [Homo sapiens]
gi|67967777|dbj|BAE00371.1| unnamed protein product [Macaca fascicularis]
gi|76780063|gb|AAI06009.1| HNRPF protein [Homo sapiens]
gi|119607001|gb|EAW86595.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607002|gb|EAW86596.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607003|gb|EAW86597.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607004|gb|EAW86598.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607005|gb|EAW86599.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|123997411|gb|ABM86307.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|157929032|gb|ABW03801.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|168277548|dbj|BAG10752.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|193785530|dbj|BAG50896.1| unnamed protein product [Homo sapiens]
gi|343959614|dbj|BAK63664.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|355562388|gb|EHH18982.1| Heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|355782737|gb|EHH64658.1| Heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
gi|380785399|gb|AFE64575.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|384946770|gb|AFI36990.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|410262002|gb|JAA18967.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262004|gb|JAA18968.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262006|gb|JAA18969.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262008|gb|JAA18970.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299574|gb|JAA28387.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299576|gb|JAA28388.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299578|gb|JAA28389.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299580|gb|JAA28390.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299582|gb|JAA28391.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340859|gb|JAA39376.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340861|gb|JAA39377.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340863|gb|JAA39378.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340865|gb|JAA39379.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340867|gb|JAA39380.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340869|gb|JAA39381.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
Length = 415
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|19527048|ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|25742579|ref|NP_071792.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546815|ref|NP_001032362.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546817|ref|NP_001032363.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546819|ref|NP_001032364.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|261878597|ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878599|ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878601|ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878603|ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878605|ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878607|ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|81911895|sp|Q794E4.3|HNRPF_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|81918016|sp|Q9Z2X1.3|HNRPF_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|4153896|dbj|BAA37095.1| ribonucleoprotein F [Rattus norvegicus]
gi|17390408|gb|AAH18185.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|19343662|gb|AAH25481.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|22137695|gb|AAH29163.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|23274049|gb|AAH33483.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|66911957|gb|AAH97275.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|73909045|gb|AAI03635.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|148667168|gb|EDK99584.1| mCG133010, isoform CRA_a [Mus musculus]
gi|149049635|gb|EDM02089.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049636|gb|EDM02090.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049637|gb|EDM02091.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049638|gb|EDM02092.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049639|gb|EDM02093.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049640|gb|EDM02094.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
Length = 415
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 232
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|26345420|dbj|BAC36361.1| unnamed protein product [Mus musculus]
Length = 421
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 232
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|73997922|ref|XP_848697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Canis lupus familiaris]
gi|73997926|ref|XP_856894.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Canis lupus familiaris]
gi|73997930|ref|XP_856973.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Canis lupus familiaris]
gi|301763831|ref|XP_002917330.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Ailuropoda melanoleuca]
gi|301763833|ref|XP_002917331.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 2
[Ailuropoda melanoleuca]
gi|301763835|ref|XP_002917332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 3
[Ailuropoda melanoleuca]
gi|301763837|ref|XP_002917333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 4
[Ailuropoda melanoleuca]
gi|410975641|ref|XP_003994239.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Felis catus]
gi|410975643|ref|XP_003994240.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Felis catus]
gi|410975645|ref|XP_003994241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Felis catus]
gi|281338546|gb|EFB14130.1| hypothetical protein PANDA_005550 [Ailuropoda melanoleuca]
Length = 414
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>gi|402880032|ref|XP_003903619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Papio anubis]
gi|402880034|ref|XP_003903620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Papio anubis]
gi|402880036|ref|XP_003903621.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Papio anubis]
gi|402880038|ref|XP_003903622.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Papio anubis]
gi|402880040|ref|XP_003903623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Papio anubis]
gi|402880042|ref|XP_003903624.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Papio anubis]
gi|402880044|ref|XP_003903625.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Papio anubis]
gi|402880046|ref|XP_003903626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Papio anubis]
gi|402880048|ref|XP_003903627.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9
[Papio anubis]
gi|402880050|ref|XP_003903628.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Papio anubis]
gi|402880052|ref|XP_003903629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Papio anubis]
gi|402880054|ref|XP_003903630.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Papio anubis]
gi|402880056|ref|XP_003903631.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Papio anubis]
gi|402880058|ref|XP_003903632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Papio anubis]
Length = 415
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EI+QFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|291412565|ref|XP_002722547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Oryctolagus cuniculus]
Length = 415
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFAVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|62460420|ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|426255584|ref|XP_004021428.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Ovis aries]
gi|426255586|ref|XP_004021429.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Ovis aries]
gi|426255588|ref|XP_004021430.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Ovis aries]
gi|75070041|sp|Q5E9J1.3|HNRPF_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|59858223|gb|AAX08946.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|74355042|gb|AAI02956.1| Heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|296472206|tpg|DAA14321.1| TPA: heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|440903473|gb|ELR54126.1| Heterogeneous nuclear ribonucleoprotein F, partial [Bos grunniens
mutus]
Length = 414
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EI+QFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>gi|348560746|ref|XP_003466174.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cavia
porcellus]
Length = 414
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 71 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 169 GKHKERIGHRYIEVFKSSQEEVR 191
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 108/257 (42%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 172 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 231
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 232 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 291
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 292 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 349
Query: 240 TIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 350 NMQHRYIELFLNSTTGA 366
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 290 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 349
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 350 NMQHRYIELFLNSTTGASNGAYSSQVMQGM 379
>gi|213513203|ref|NP_001135339.1| G-rich sequence factor 1 [Salmo salar]
gi|209734348|gb|ACI68043.1| G-rich sequence factor 1 [Salmo salar]
Length = 400
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 10/205 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR+RGLP++CT+ D+ FF+GLD+ + L+ + GR SGEA+V F Q + AL R
Sbjct: 199 VVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVTDYRGRNSGEAYVQFLTQEQADEALTR 258
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG---IYDNDFHGSPPPSRAKRYNDKDQME 173
DRQ +G RY+EVF +R + +E EG I + PSR + +
Sbjct: 259 DRQVIGNRYIEVFPSRRSEIGGRKKTESVEEGRNSIQSQPHRPAAQPSRHGSHPVSSLPQ 318
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
H + MRGLPF +IVQFF + +I + PDG+A+GEA V F S ++A A
Sbjct: 319 H--FVHMRGLPFQATGDDIVQFFSPLAL--SRILVEFGPDGRASGEADVYFTSHQDAVSA 374
Query: 234 MCKDKMTIGSRYVELFPSTPDEARR 258
M +DK + RY+ELF ++ +R
Sbjct: 375 MTRDKAHMQERYIELFLNSTSSDKR 399
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 35/206 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ +FF+ + D L VN++G+ +G+AF+ V AL
Sbjct: 102 IIRAKGLPWSCTTEDLLQFFSECRVRDGVKGIHLTVNRDGKPNGQAFIELEHEDDVGKAL 161
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ RQ +G RY+EVF D + V P+R
Sbjct: 162 EKHRQYLGPRYIEVFEVTNSDAETILKKSVQL-------------PARDG---------- 198
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S +++++ FF + ED + + G+ +GEAYV+F++ E+A A+
Sbjct: 199 --VVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVTDYRGRNSGEAYVQFLTQEQADEAL 256
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAE 260
+D+ IG+RY+E+FPS RR+E
Sbjct: 257 TRDRQVIGNRYIEVFPS-----RRSE 277
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I++ +GLP+S +++QFF + ++ + IH+ DGK G+A++E ++ +A+
Sbjct: 102 IIRAKGLPWSCTTEDLLQFFSECRVRDGVKGIHLTVNRDGKPNGQAFIELEHEDDVGKAL 161
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
K + +G RY+E+F T +A +S Q
Sbjct: 162 EKHRQYLGPRYIEVFEVTNSDAETILKKSVQ 192
>gi|351699543|gb|EHB02462.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 372
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 71 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 169 GKHKERIGHRYIEVFKSSQEEVR 191
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR-------------AK 164
++ +G RY+EVF+ +++ + + + + + P +R +
Sbjct: 172 KERIGHRYIEVFKSSQEEVRSYSDPPLKFTSVQQPGPYDHPDTARRYIGIVKQAGLERMR 231
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
Y D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 232 SYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 289
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + EEA AM KD+ + RY+ELF
Sbjct: 290 VEFATHEEAVAAMSKDRANMQHRYIELF 317
>gi|149690626|ref|XP_001490069.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Equus caballus]
gi|338717722|ref|XP_003363688.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Equus
caballus]
Length = 414
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAF+ V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFIELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>gi|194042674|ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
scrofa]
gi|335301642|ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
gi|350592730|ref|XP_003483523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
Length = 414
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + +EA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>gi|351714958|gb|EHB17877.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 414
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 71 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P GK TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPKGKITGEAFVQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 169 WKHKERIGHRYIEVFKSSQEEVR 191
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 108/257 (42%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPKGKITGEAFVQFASQELAEKALWKH 171
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 172 KERIGHRYIEVFKSSQEEVRSYSDPPLKFTSVQQPGPYDHPDTARRYIGIVKQAGLERMR 231
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT-------------EILK 179
Y A Y G+ D + R Y +H +
Sbjct: 232 SGAYSAGYAGYEEYRGLSDCYGFTTDLFGRDLSYCLSGMYDHGFGDGEFTVQSTTGHCVH 291
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 292 MRGLPYKATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 349
Query: 240 TIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 350 NMQHRYIELFLNSTTGA 366
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 36 VSSSASGFQPYGYGGG--FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNK 92
+S SG +G+G G + V +RGLP+ T+ DI FF+ L+ + V + +
Sbjct: 263 LSYCLSGMYDHGFGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGP 322
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+GR +GEA V FA + A+ +DR NM RY+E+F
Sbjct: 323 DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 359
>gi|344274318|ref|XP_003408964.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Loxodonta africana]
Length = 414
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSECKIHDGVAGVHFIYTREGRQSGEAFVELESEEDVKMAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 71 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCTKEEIVQFFSGLEIMPNGITLPVDPEGKITGEAFVQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 169 GKHKERIGHRYIEVFKSSQEEVR 191
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 109/257 (42%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+I+ L V+ G+ +GEAFV FA E AL +
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIMPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 172 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGFDRMR 231
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D+ D RY D + Q +
Sbjct: 232 SGAYSTGYGGYEEYSGLSDSYGFTTDLFGRDLSYCLSGMYDHRYGDSEFAVQSTTGHCVH 291
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 292 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 349
Query: 240 TIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 350 NMQHRYIELFLNSTTGA 366
>gi|357613158|gb|EHJ68351.1| putative Heterogeneous nuclear ribonucleoprotein H [Danaus
plexippus]
Length = 343
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 20/203 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+++LRGLPF+ T D+ F +G+++++ L + GR SGE FV V AL
Sbjct: 10 IIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQDDVTHAL 69
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++D++N+GRRY+EVF RQD A+ + E +D P+ + +
Sbjct: 70 KKDKENIGRRYIEVFSTDRQDMEWALNAMRQSENGFD------VIPNVSDDFG------- 116
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I+K+RGLPF K EI+QFF +++D +H+ G+A+GEA+V FV + A+ A+
Sbjct: 117 --IVKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGEAFVYFVDKQSARDAL 174
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
+D IG RY+E+F S+ D+ R
Sbjct: 175 DRDMEKIGHRYIEVFLSSADKVR 197
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 103/226 (45%), Gaps = 41/226 (18%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
F +V+LRGLPF C+ +I +FF GL +V LL + GR SGEAFV F AL
Sbjct: 115 FGIVKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGEAFVYFVDKQSARDAL 174
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME- 173
RD + +G RY+EVF D A + + G + +P Y+ D++
Sbjct: 175 DRDMEKIGHRYIEVF-LSSADKVRAYGARLEGGGFKSRGYRPTP-------YDRNDRLSG 226
Query: 174 ---------------------------HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
+ + MRGLPF +I FFK + + I
Sbjct: 227 RFGGRGRGSFARGGSGGSYTGRGGRLGSSHCVHMRGLPFKATPQDIAYFFKPIRPLNINI 286
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
H G+ +GEA VEF E+A RAM +DK + RY+ELF ++
Sbjct: 287 HYDN--SGRPSGEADVEFECHEDAMRAMRRDKNNMEHRYIELFMNS 330
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I+K+RGLPFS +++ F +I DK +H+ G+ +GE +VE S ++ A+
Sbjct: 10 IIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQDDVTHAL 69
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
KDK IG RY+E+F + + A + RQ
Sbjct: 70 KKDKENIGRRYIEVFSTDRQDMEWALNAMRQ 100
>gi|348513989|ref|XP_003444523.1| PREDICTED: G-rich sequence factor 1-like [Oreochromis niloticus]
Length = 400
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 116/227 (51%), Gaps = 31/227 (13%)
Query: 44 QPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEA 100
QP G G VV LRGLPF CT+ DI FF+GL+I + ++ + GR SG A
Sbjct: 185 QPLGADG---------VVLLRGLPFTCTEDDIVHFFSGLEITENGITMVTDSRGRKSGVA 235
Query: 101 FVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA------------SEVNYEG 148
+V F + ALQRDR+ +G RY+EVF +R + ++ V+
Sbjct: 236 YVQFTSQEAADEALQRDREIIGNRYIEVFPSRRDEIHSTWGRRTSPFSSQSRPQSVDRRS 295
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+N SPPPS + + + +RGLPF +IV+FF Y + KI I
Sbjct: 296 APENRSPASPPPS----LHLQSSTVPLHYIHVRGLPFQASGEDIVKFF--YPLAVSKILI 349
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTPD 254
C PDG+ +GEA V F +A AM KD+M IG RY+ELF S PD
Sbjct: 350 ECGPDGRPSGEADVYFHCHRDAVAAMSKDRMNIGERYIELFLNSVPD 396
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 119/257 (46%), Gaps = 46/257 (17%)
Query: 25 QRMMEPNPYFAVSSSASGFQPYGYGG---GFPPPPSFP-----------VVRLRGLPFNC 70
QR+ E P AV SS S F G +PP P++ +V+++GLP++C
Sbjct: 48 QRLCELQP--AVRSSHSRFCTKTGGTCEDDYPPLPAYHPETEPETKEVYIVQVKGLPWSC 105
Query: 71 TDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125
T D+ +FF+ I D L +++ GR SG AF+ V AL++ RQ +G RY
Sbjct: 106 TTQDLLQFFSECRIRDGVKGIHLTLDRLGRPSGRAFIEMEHEEDVSKALEKHRQYLGPRY 165
Query: 126 VEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPF 185
VEV+ D + G ++ +RGLPF
Sbjct: 166 VEVYEVTNGDAEAILKKATQPLGA-------------------------DGVVLLRGLPF 200
Query: 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
+ + +IV FF +I E+ I + G+ +G AYV+F S E A A+ +D+ IG+RY
Sbjct: 201 TCTEDDIVHFFSGLEITENGITMVTDSRGRKSGVAYVQFTSQEAADEALQRDREIIGNRY 260
Query: 246 VELFPSTPDEARRAESR 262
+E+FPS DE R
Sbjct: 261 IEVFPSRRDEIHSTWGR 277
>gi|196010820|ref|XP_002115274.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
gi|190582045|gb|EDV22119.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
Length = 339
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 109/195 (55%), Gaps = 28/195 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++ T D+ KFF G + + +GR SGEA++ F AL
Sbjct: 8 VVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSLEDFNRAL 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+R+R +MG+RYVEVF+ KR SE++Y KR + +
Sbjct: 68 ERNRCHMGKRYVEVFKSKR--------SEMDYV---------------VKRTKQRSGRDS 104
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ K EI QFF Y+II + I DG++TGEAYVEF + + ++RA+
Sbjct: 105 ENVVRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGRSTGEAYVEFANTDVSERAL 164
Query: 235 CKDKMTIGSRYVELF 249
KDK TIG RY+E+F
Sbjct: 165 SKDKETIGHRYIEIF 179
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 38/233 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLP+ C+ +I +FF G +I+ V+++GR +GEA+V FA E AL +
Sbjct: 107 VVRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGRSTGEAYVEFANTDVSERALSK 166
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVN-------------YEGIYDNDFHGSPPPSRA 163
D++ +G RY+E+FR K+ D +N A ++ Y+ + F P R
Sbjct: 167 DKETIGHRYIEIFRAKKSDIHNMSAPKIRPLIGSAASSRPRPYDRKRGDRFTRGHPEDRY 226
Query: 164 KR-------YNDKDQMEH-------------TEILKMRGLPFSVKKSEIVQFFKDYKIIE 203
+ Y D +H ++MRGLPF V ++EIV FF +I
Sbjct: 227 NQGRGYNRGYLDNRPSDHPVEPDRPPDFEPNVHSIRMRGLPFKVTENEIVDFFD--QIPL 284
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256
IHI GKATGEA VEF + E+A AM KD+ I RY+ELF +T E+
Sbjct: 285 QNIHIEYGDGGKATGEAVVEFYNYEDALEAMNKDRRRIKHRYIELFLNTTPES 337
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 172 MEHTE--ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSV 227
M +TE ++++RGLP+S ++ +FF ++ E + IH DG+A+GEAY+EF S+
Sbjct: 1 MANTEEFVVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSL 60
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
E+ RA+ +++ +G RYVE+F S E R++Q
Sbjct: 61 EDFNRALERNRCHMGKRYVEVFKSKRSEMDYVVKRTKQ 98
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 54 PP---PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQ 109
PP P+ +R+RGLPF T+ +I FF + + ++ + G+ +GEA V F
Sbjct: 251 PPDFEPNVHSIRMRGLPFKVTENEIVDFFDQIPLQNIHIEYGDGGKATGEAVVEFYNYED 310
Query: 110 VEFALQRDRQNMGRRYVEVF 129
A+ +DR+ + RY+E+F
Sbjct: 311 ALEAMNKDRRRIKHRYIELF 330
>gi|351714959|gb|EHB17878.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 413
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 71 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 169 RKHKERIGHRYIEVFKSSQQEVR 191
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 108/256 (42%), Gaps = 62/256 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL++
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALRKH 171
Query: 117 --------------------------------------DRQNMGRRYVEVFRCKRQDYYN 138
DR RRY+ + + + +
Sbjct: 172 KERIGHRYIEVFKSSQQEVRSYSDLPLKFMSMQRPGPYDRPGTARRYIGIVKQTGLERMS 231
Query: 139 AVASEVNYEG---------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILKM 180
+ A Y G ++ D + D + Q + M
Sbjct: 232 SGAYSAGYGGFEYSGLSEGYGFTTDLFGRDLSYCLSGMYDHGFGDGEFTVQSTTGHCVHM 291
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 292 RGLPYKATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEEAVPAMSKDRAN 349
Query: 241 IGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 350 MQHRYIELFLNSTTGA 365
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 36 VSSSASGFQPYGYGGG--FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNK 92
+S SG +G+G G + V +RGLP+ T+ DI FF+ L+ + V + +
Sbjct: 262 LSYCLSGMYDHGFGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGP 321
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+GR +GEA V FA + A+ +DR NM RY+E+F
Sbjct: 322 DGRVTGEADVEFATHEEAVPAMSKDRANMQHRYIELF 358
>gi|395851365|ref|XP_003798231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 415
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSNCTIHDGPGGIHFIYTREGRQSGEAFVELGSEDDVKMAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 71 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIV FF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCTKEEIVLFFTGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 169 GKHKERIGHRYIEVFKSSQEEVR 191
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 106/258 (41%), Gaps = 64/258 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VRLRGLPF CT +I FF GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 112 VRLRGLPFGCTKEEIVLFFTGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 117 --------------------------------------DRQNMGRRYVEVF------RCK 132
DR RRY+ + R +
Sbjct: 172 KERIGHRYIEVFKSSQEEVRSYSDLPLKFMSVQRPGPYDRHGTARRYMGIVKQAGLERMR 231
Query: 133 RQDYYNAVASEVNYEGIYDNDF-HGSPPPSRAKRYNDKDQMEH-------------TEIL 178
Y + Y G+ D+ + + R Y +H +
Sbjct: 232 PGAYSAGYGAYEEYGGLSDSGYGFATDVLGRDLSYCLSGMYDHRYGDGEFAVPSTTGHCV 291
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 292 HMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 239 MTIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 350 ANMQHRYIELFLNSATGA 367
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 36 VSSSASGFQPYGYGGG--FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNK 92
+S SG + YG G P + V +RGLP+ T+ DI FF+ L+ V V + +
Sbjct: 264 LSYCLSGMYDHRYGDGEFAVPSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGP 323
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+GR +GEA V FA + A+ +DR NM RY+E+F
Sbjct: 324 DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 360
>gi|302852446|ref|XP_002957743.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
gi|300256919|gb|EFJ41175.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
Length = 241
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 119/211 (56%), Gaps = 14/211 (6%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
FP VRLRGLPF+ + DI K F L+ VD+++V ++GRFSGEA VV VE AL +
Sbjct: 34 FPCVRLRGLPFDVMEGDI-KMFLELETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSKH 92
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ +G+R++E+F ++DYY AVA+ V+ + R T
Sbjct: 93 RQFIGQRFIEIFPSSKRDYYRAVAAYVSGDSYGQQ-------GMGMGRGGMGAGSGGTTW 145
Query: 178 LKMRGLPFSVKKSEIVQFFKDY-----KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
LK+RGLPF+ +I+ FF D ++ ++H+ G+ TG A V+F + +EA
Sbjct: 146 LKLRGLPFAAVPDDIIAFFDDGTLGIPRLDPSRVHMWT-DGGRPTGMALVQFNTPQEASI 204
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A KDK +G+RYVE+FP+T + + +R+
Sbjct: 205 ARSKDKGLMGTRYVEIFPATRGDLDKFMART 235
>gi|442755167|gb|JAA69743.1| Putative splicing factor hnrnp-f [Ixodes ricinus]
Length = 279
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 115/202 (56%), Gaps = 27/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F +G I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVSGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRERMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ ++I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNRITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K K IG RY+E+F S+ ++
Sbjct: 170 GKHKERIGHRYIEVFKSSQEKV 191
>gi|298710505|emb|CBJ25569.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 670
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 18/197 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI----VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
VVR+RGLP++ + DI FF G+ I + V L N++GR SGEA+VVF + AL+
Sbjct: 142 VVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTL-NRDGRPSGEAYVVFETEEAAKEALK 200
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RD+ +G R++++F + + Y+ F D +T
Sbjct: 201 RDKDKIGERWIDIFEATKGEVYSMTGGGGKKGDQGGVSF-------------DTTDSAYT 247
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+++MRGLPF KS+I FF + E I I RPDGKA+GEA+V F + EA++A+
Sbjct: 248 GVVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALL 307
Query: 236 KDKMTIGSRYVELFPST 252
KDK +G R+++LF +
Sbjct: 308 KDKEKLGDRWIDLFATN 324
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 26/198 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V LRGLP+N + ++ FFA +D+ D + LV+ N R GEA+V +E AL++D
Sbjct: 47 AVHLRGLPWNASTKELVDFFAPMDVEDGDIHLVH-NSR--GEAYVKLKNESDLETALKKD 103
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R +GRRY+EVFR +D +A+ +V+ +G D + G +
Sbjct: 104 RNTIGRRYIEVFRSSIEDVEHAL-DDVSSKGHGDGGYKG--------------------V 142
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+S + +I FF I +D IH+ DG+ +GEAYV F + E AK A+ +D
Sbjct: 143 VRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLNRDGRPSGEAYVVFETEEAAKEALKRD 202
Query: 238 KMTIGSRYVELFPSTPDE 255
K IG R++++F +T E
Sbjct: 203 KDKIGERWIDIFEATKGE 220
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 24/208 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI--VDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQR 116
VVR+RGLPF T I FF G+++ ++ +V + +G+ SGEAFV+F+ + E AL +
Sbjct: 249 VVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLK 308
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
D++ +G R++++F + Y V V D +F G
Sbjct: 309 DKEKLGDRWIDLFATNKGALYQRVGVGVKMAAKPDAEFRG-------------------- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
+L+MRGLPF+ EI FF+ YK+ E + + D + TGE+YV F S +EA+RA
Sbjct: 349 VLRMRGLPFASGVEEIRTFFRGYKVQEHGVFVVNGGDWRPTGESYVLFDSEDEAERAFKA 408
Query: 236 KDKMTIGSRYVELFPSTPDEARRAESRS 263
DK IG R++ELF ST + A RS
Sbjct: 409 LDKQKIGDRWIELFRSTKGDLYTATVRS 436
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 29/231 (12%)
Query: 34 FAVSSSASGFQPYGYGGGFPPPPSFP---VVRLRGLPFNCTDIDICKFFAGLDIVD--VL 88
FA + A +Q G G P V+R+RGLPF +I FF G + + V
Sbjct: 321 FATNKGAL-YQRVGVGVKMAAKPDAEFRGVLRMRGLPFASGVEEIRTFFRGYKVQEHGVF 379
Query: 89 LVNK-NGRFSGEAFVVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDYYNAVASEVNY 146
+VN + R +GE++V+F + E A + D+Q +G R++E+FR + D Y A
Sbjct: 380 VVNGGDWRPTGESYVLFDSEDEAERAFKALDKQKIGDRWIELFRSTKGDLYTATVRSTVL 439
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
+G P + +K+RGLPF+V ++ I FF+ +I I
Sbjct: 440 GMERGGAMYGREPMT---------------CVKLRGLPFNVTENNIFSFFEGLTVIGSFI 484
Query: 207 --HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ RP TGE +VEF +V++ + AM +++ ++ RYVE+F ++ ++
Sbjct: 485 CKDVMARP----TGEGFVEFATVDDCQLAMSRNRESMMDRYVEVFATSKED 531
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGP 107
GG V+LRGLPFN T+ +I FF GL ++ + + R +GE FV FA
Sbjct: 444 GGAMYGREPMTCVKLRGLPFNVTENNIFSFFEGLTVIGSFICKDVMARPTGEGFVEFATV 503
Query: 108 IQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS 142
+ A+ R+R++M RYVEVF ++D + +
Sbjct: 504 DDCQLAMSRNRESMMDRYVEVFATSKEDVLQQIGA 538
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
E+T + +RGLP++ E+V FF + + IH+ + GEAYV+ + + +
Sbjct: 43 EYTHAVHLRGLPWNASTKELVDFFAPMDVEDGDIHLVH----NSRGEAYVKLKNESDLET 98
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRA 259
A+ KD+ TIG RY+E+F S+ ++ A
Sbjct: 99 ALKKDRNTIGRRYIEVFRSSIEDVEHA 125
>gi|148707962|gb|EDL39909.1| mCG129396 [Mus musculus]
Length = 415
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + G SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGSQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG Y+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHPYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 112/265 (42%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 232
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHRVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPFNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>gi|440793766|gb|ELR14941.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 622
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 23/207 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---------VLLVNKNGRFSGEAFVVFAGPIQV 110
VVRLRGLP+ T+ DI FF GL +L ++ +GR +GE + F
Sbjct: 8 VVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNEETF 67
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL +D++ MG+RY+EVF C + D A ++ G+ + + ++D
Sbjct: 68 VKALAKDKERMGQRYIEVFACPQSDMEKA---QMLARGVTEGA---------SAAATNED 115
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
++ +++MRGLPF + EIV FF+ ++++ + I PDG+ TGEAYV+F S E
Sbjct: 116 DLQCAAVVRMRGLPFRATEGEIVAFFEQAGVRVLDGGVLICKNPDGRVTGEAYVQFGSDE 175
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDE 255
+A+RA+ + + +GSRY+ELF S E
Sbjct: 176 DARRALERHRDQMGSRYIELFRSNKPE 202
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 26/220 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFF--AGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF T+ +I FF AG+ ++D ++ N +GR +GEA+V F AL
Sbjct: 122 VVRMRGLPFRATEGEIVAFFEQAGVRVLDGGVLICKNPDGRVTGEAYVQFGSDEDARRAL 181
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN-------------------DFH 155
+R R MG RY+E+FR + + N + + + H
Sbjct: 182 ERHRDQMGSRYIELFRSNKPELINVMRRQQTTRDLQQQRGGYGRGHDHGHGHDHGHGHEH 241
Query: 156 GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
++ + ++++RGLPFS + EI +F + ++HI G+
Sbjct: 242 RGGYGGPPTGPPGAEEGDGEWVVRLRGLPFSATEEEIANWFA--PMPARRVHIILTGSGR 299
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+G+A+ EF + + + AM K++ +GSRYVE+F S+ E
Sbjct: 300 PSGDAFAEFDNEAQWEHAMSKNRQHMGSRYVEIFGSSRHE 339
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 18/113 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLPF+ T+ +I +FA + V +++ +GR SG+AF F Q E A+ ++R
Sbjct: 263 VVRLRGLPFSATEEEIANWFAPMPARRVHIILTGSGRPSGDAFAEFDNEAQWEHAMSKNR 322
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
Q+MG RYVE+F R + ++++ HG PP RY+ + Q
Sbjct: 323 QHMGSRYVEIFGSSRHELMSSLS-------------HGEPP----SRYHHQHQ 358
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED------KIHIACRPDGKATGEAYVEFVSVEEA 230
++++RGLP+ + +I FF+ D I +A P G+ TGE Y F + E
Sbjct: 8 VVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNEETF 67
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
+A+ KDK +G RY+E+F + +A+ +R
Sbjct: 68 VKALAKDKERMGQRYIEVFACPQSDMEKAQMLAR 101
>gi|321466664|gb|EFX77658.1| hypothetical protein DAPPUDRAFT_198258 [Daphnia pulex]
Length = 397
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 110/205 (53%), Gaps = 24/205 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVRLRGLP+ TD DI KFF +IV + + GR +GE ++ + VE AL
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ +++G RY+EVFR KR + V S PP+ A +D D
Sbjct: 68 TKHNEHLGPRYIEVFRSKRSEMEWMVKR--------------SGPPNAAAPSSDDDC--- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EI QFF +I+ + I + G++TGEAY++F + A+RA+
Sbjct: 111 --FVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPTDYSGRSTGEAYIQFATSALAERAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEARRA 259
K K IG RY+E+F S+ EAR A
Sbjct: 169 EKHKEKIGHRYIEIFRSSLSEARAA 193
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L + +GR +GEA++ FA E AL++
Sbjct: 112 VRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPTDYSGRSTGEAYIQFATSALAERALEKH 171
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
++ +G RY+E+FR + A+AS
Sbjct: 172 KEKIGHRYIEIFRSSLSEARAALAS 196
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP++V +I++FF+D I+ IH+ +G+ TGE Y+E S E+ +RA+
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRS 263
K +G RY+E+F S E RS
Sbjct: 68 TKHNEHLGPRYIEVFRSKRSEMEWMVKRS 96
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF + +I +FF + IHI G+A+GEA VEF + E+A RAM +D
Sbjct: 309 IHMRGLPFRASEDDIAEFFHPLHPV--AIHIGYE-QGRASGEADVEFATHEDAVRAMSRD 365
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 366 KCNMQHRYIELF 377
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
+ +RGLPF ++ DI +FF L V + + + GR SGEA V FA A+ RD+ N
Sbjct: 309 IHMRGLPFRASEDDIAEFFHPLHPVAIHIGYEQGRASGEADVEFATHEDAVRAMSRDKCN 368
Query: 121 MGRRYVEVF 129
M RY+E+F
Sbjct: 369 MQHRYIELF 377
>gi|148667170|gb|EDK99586.1| mCG133010, isoform CRA_c [Mus musculus]
Length = 187
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 27/198 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPST 252
K K IG RY+E+F S+
Sbjct: 170 GKHKERIGHRYIEVFKSS 187
>gi|313227785|emb|CBY22933.1| unnamed protein product [Oikopleura dioica]
Length = 559
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 24/208 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VR+RG+P+ C+D D+ KFF GL+I L++N+NGR SGEA + F ALQR
Sbjct: 135 VRVRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLNQNGRRSGEALIRFENSEHRNLALQRH 194
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ+MG RY+EVF+ D+ A G+ P + +R+ + + I
Sbjct: 195 RQHMGNRYIEVFKAPSIDFIQMNA--------------GTLP--QVERFLGQGSV---AI 235
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+MRGLPFS K +I+QF + I+ D I + +GK TG+A+V S ++A +A+
Sbjct: 236 ARMRGLPFSASKEDILQFLCEIHIVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAVQALG 295
Query: 236 KDKMTIGSRYVELFPSTPDEARRAESRS 263
+ K + RYVE+F ST E + +R+
Sbjct: 296 RHKANLRDRYVEVFRSTGAELHQVLTRA 323
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 17/212 (8%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVE 111
S + R+RGLPF+ + DI +F + IV+ L+ G+ +G+AFV+ A
Sbjct: 232 SVAIARMRGLPFSASKEDILQFLCEIHIVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAV 291
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL R + N+ RYVEVFR + + V + I H P A++Y
Sbjct: 292 QALGRHKANLRDRYVEVFRSTGAELHQ-VLTRAMAAPIIPPGSHTGLPFMMAQQYIPSSV 350
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++RG+P+S +I+ F + I+ +H+ G+ +G+A+++ + E
Sbjct: 351 ---RNCVRLRGMPYSATLEDIMNFLGESSQFILPAGVHMVLNQQGRPSGDAFIQLQAHEF 407
Query: 230 AKRAMCK------DKMTIGSRYVELFPSTPDE 255
A R K +G RYVE+F + DE
Sbjct: 408 ASRVALDVNKGGCHKKHMGERYVEVFQCSGDE 439
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+E +++RG+P+ ++ +FF+ I + + +G+ +GEA + F + E
Sbjct: 129 VEEDTCVRVRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLNQNGRRSGEALIRFENSEHRN 188
Query: 232 RAMCKDKMTIGSRYVELF 249
A+ + + +G+RY+E+F
Sbjct: 189 LALQRHRQHMGNRYIEVF 206
>gi|410923501|ref|XP_003975220.1| PREDICTED: G-rich sequence factor 1-like [Takifugu rubripes]
Length = 380
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 115/202 (56%), Gaps = 16/202 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ T DI +FF+ LDIV+ ++ + GR SGEAFV F + E AL R
Sbjct: 187 VVRLRGLPFSSTKADIAQFFSDLDIVENGITIITDHAGRNSGEAFVQFFSKEEAEKALLR 246
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT- 175
DR MG RY+EVF + ++ Y+ + + G+ D R +R + ++++
Sbjct: 247 DRAVMGTRYIEVFPSRSEEVYS--SKRMRNSGVSDTGH-----SVRNRRTTSQSLVQNSL 299
Query: 176 --EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ MRGLPF V ++V FF+ ++ K+ + PDG+ +GEA V F E+A A
Sbjct: 300 PLHYIHMRGLPFQVSGEDVVNFFR--PLVVSKMLMEFGPDGRPSGEADVYFGRHEDAVAA 357
Query: 234 MCKDKMTIGSRYVELF-PSTPD 254
M +D+ IG RY+ELF S PD
Sbjct: 358 MSRDREHIGGRYIELFLNSVPD 379
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 41/230 (17%)
Query: 43 FQPYGYGGGFPPPPSFP-----------VVRLRGLPFNCTDIDICKFFAGLDIVDVL--- 88
Q G +PP P++ +V+++GL ++CT D+ KFF+ I D +
Sbjct: 62 LQTGGSCDEYPPLPAYQHETEEERKEVFIVQVKGLLWSCTPQDLLKFFSDCRIRDGVKGI 121
Query: 89 --LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNY 146
+NK GR +G AF+ V AL++ RQ +G RYVEV+ +E +
Sbjct: 122 HFTLNKMGRPTGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVYEV----------TESDA 171
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
E I + + + +D ++++RGLPFS K++I QFF D I+E+ I
Sbjct: 172 EAIMEK--------ATGSQADDG-------VVRLRGLPFSSTKADIAQFFSDLDIVENGI 216
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256
I G+ +GEA+V+F S EEA++A+ +D+ +G+RY+E+FPS +E
Sbjct: 217 TIITDHAGRNSGEAFVQFFSKEEAEKALLRDRAVMGTRYIEVFPSRSEEV 266
>gi|126328002|ref|XP_001371131.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 466
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ DI +FF+ I++ + + G+ SGEAFV ++ AL
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKILNEEAGIHFVYTREGKLSGEAFVELKSEDEITLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVFR +S + + + H +P N D
Sbjct: 72 KKDRETMGHRYVEVFR----------SSNIEMDWVLK---HTAP--------NSLDTASD 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G+ +GEA+V+F S E A++A+
Sbjct: 111 G-FVRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K+K TIG RY+E+F S+ EA+
Sbjct: 170 KKNKETIGHRYIEIFKSSQAEAQ 192
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 116/250 (46%), Gaps = 56/250 (22%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C +I +FF+GL+I+ L V+ GR SGEAFV FA E AL+++
Sbjct: 113 VRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKALKKN 172
Query: 118 RQNMGRRYVEVFRCKR---QDYYN------------------------------------ 138
++ +G RY+E+F+ + Q YY+
Sbjct: 173 KETIGHRYIEIFKSSQAEAQTYYDFPRKLMARHRPGPYDRPQAGRGYSTLGRGVGFAGMR 232
Query: 139 AVASEVNYEGIYDNDFHGS------------PPPSRAKRYNDKDQMEHTEILKMRGLPFS 186
A E Y G D +++ S ++ +Q + MRGLP+
Sbjct: 233 CGAYEAGYRGYDDYNWYNDDYCFGRYLNLEMSDHSYGDSWSTFNQSPAGHYVHMRGLPYK 292
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
+++I FF K + I I PDG+ TGEA VEF + E+A AM KDK + RY+
Sbjct: 293 ATENDICDFFSPLKPVGAYIEIG--PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYI 350
Query: 247 ELFPSTPDEA 256
ELF ++ EA
Sbjct: 351 ELFLNSTIEA 360
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F P+ V +RGLP+ T+ DIC FF+ L V + + +GR +GEA V FA
Sbjct: 275 FNQSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIGPDGRVTGEADVEFATHEDA 334
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +D+ NM RY+E+F
Sbjct: 335 VAAMSKDKANMQHRYIELF 353
>gi|348534060|ref|XP_003454521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 401
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++CT ++ FF+ DIV +K GR SGEAF+ + AL
Sbjct: 9 VVRIRGLPWSCTQDEVASFFSDCDIVGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+DR+ MG RY+EVF+ R SE+++ S P D D
Sbjct: 69 AKDRKYMGHRYIEVFKSNR--------SEMDWV------LKRSGPA-------DYDSCSG 107
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 108 C-MLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKAL 166
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 167 GKHKERIGHRYIEIFKSSRNEIR 189
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF + +I +FF + +IHI P+GK+TGEA VEF S E+A AM
Sbjct: 294 HFVHMRGLPFRATEGDIAKFFSPLNPL--RIHIDMAPNGKSTGEADVEFRSHEDAVAAMS 351
Query: 236 KDKMTIGSRYVELFPSTPDEARRAESR 262
KDK + RY+ELF ++ SR
Sbjct: 352 KDKNHMQHRYIELFLNSTASGAAEMSR 378
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI KFF+ L+ + + + + NG+ +GEA V F A+ +D+
Sbjct: 296 VHMRGLPFRATEGDIAKFFSPLNPLRIHIDMAPNGKSTGEADVEFRSHEDAVAAMSKDKN 355
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 356 HMQHRYIELF 365
>gi|21618692|gb|AAH31468.1| RNA binding motif protein 35A [Mus musculus]
Length = 444
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 166
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 227 LRKHKELLGKRYIELFRSTAAEVQQVLNR 255
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 227 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 284
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 285 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 335
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 336 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 367
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 61 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 120
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 121 LALQRHKHHMGTRYIEVYKATGED 144
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 279 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 337
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 338 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 367
>gi|441647515|ref|XP_003268407.2| PREDICTED: epithelial splicing regulatory protein 1 [Nomascus
leucogenys]
Length = 821
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 388 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 447
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 448 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 488
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 489 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 548
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 549 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 577
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 489 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 548
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 549 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 606
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 607 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 657
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 658 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 689
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 383 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 442
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 443 LALQRHKHHMGTRYIEVYKAT 463
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 601 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 659
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 660 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 689
>gi|307203918|gb|EFN82825.1| Heterogeneous nuclear ribonucleoprotein H2 [Harpegnathos saltator]
Length = 388
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 109/201 (54%), Gaps = 29/201 (14%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+RGLP++ T +I KFFA I + + +++ GR SGEA+V P +E A +RD
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKACKRD 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R +MG RY+EVF+ KR + V S +N E D+
Sbjct: 61 RDHMGHRYIEVFKAKRGEMEWVVKRSGLNLENAMDDG----------------------- 97
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA+ K
Sbjct: 98 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQK 157
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 158 HKEKIGHRYIEIFRSSLSEVR 178
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF+GL+I+ L + GR +GEA+V F E ALQ+
Sbjct: 98 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQK 157
Query: 117 DRQNMGRRYVEVFR 130
++ +G RY+E+FR
Sbjct: 158 HKEKIGHRYIEIFR 171
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF + +I FF+ + + + I G+ +GEA VEF + EEA +AMCKD
Sbjct: 271 IHMRGLPFKATEQDIADFFRPIEPV--NVRIILENGGRPSGEADVEFATHEEAVKAMCKD 328
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 329 KSHMLHRYIELF 340
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
MRGLP+S EI++FF D I K +H+ +G+ +GEAYVE + E+ ++A +D
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKACKRD 60
Query: 238 KMTIGSRYVELFPSTPDEARRAESRS 263
+ +G RY+E+F + E RS
Sbjct: 61 RDHMGHRYIEVFKAKRGEMEWVVKRS 86
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +RGLPF T+ DI FF ++ V+V ++ +N GR SGEA V FA + A+ +D+
Sbjct: 271 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMCKDKS 330
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 331 HMLHRYIELF 340
>gi|119612126|gb|EAW91720.1| RNA binding motif protein 35A, isoform CRA_a [Homo sapiens]
Length = 503
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 166
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 284
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 285 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 335
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 336 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 367
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 59 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 118
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 119 RDLALQRHKHHMGTRYIEVYKATGED 144
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 279 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 337
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 338 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 388
>gi|193643553|ref|XP_001946497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 518
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 114/216 (52%), Gaps = 32/216 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV--------LLVNKNGRFSGEAFVVFAGPIQVE 111
VV++RGLP++ T DI KF + L V L + + GR SGEA+V ++
Sbjct: 56 VVKMRGLPWSATADDIIKFLSILGEAKVKDGAAGVHLTMAREGRPSGEAYVEMESEEDLK 115
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL++DR++MG RY+EVFR KR + + K + D
Sbjct: 116 AALKKDREHMGNRYIEVFRSKRSEMEWVIK----------------------KTGSTLDS 153
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ +++RGLPF K +IVQFF+ ++ D I IA G++TGEA+V+FV E A+
Sbjct: 154 VLDDNCVRLRGLPFGSTKDDIVQFFQGLEMTPDGITIATDFTGRSTGEAFVQFVDRENAE 213
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA--ESRSRQ 265
+A+ K K IG RY+E+F S+ E R + R RQ
Sbjct: 214 KALQKHKEKIGHRYIEIFRSSLAEIRNQALQRRPRQ 249
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF T DI +FF GL++ + + GR +GEAFV F E ALQ+
Sbjct: 160 VRLRGLPFGSTKDDIVQFFQGLEMTPDGITIATDFTGRSTGEAFVQFVDRENAEKALQKH 219
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD 151
++ +G RY+E+FR + N + YD
Sbjct: 220 KEKIGHRYIEIFRSSLAEIRNQALQRRPRQTPYD 253
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 55 PPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVE 111
PPS P VV +RGLPF + DI FF L+ VD+ +L N N R SGEA V F
Sbjct: 339 PPSRPLYVVHMRGLPFKANEDDIATFFEPLEPVDIRILFNNNNRPSGEANVEFGNKEDAM 398
Query: 112 FALQRDRQNMGRRYVEVF 129
A+ +D+ M RY+E+F
Sbjct: 399 RAMSKDKTYMQHRYIELF 416
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++ MRGLPF + +I FF+ + ++ I I + + +GEA VEF + E+A RAM K
Sbjct: 346 VVHMRGLPFKANEDDIATFFEPLEPVD--IRILFNNNNRPSGEANVEFGNKEDAMRAMSK 403
Query: 237 DKMTIGSRYVELF 249
DK + RY+ELF
Sbjct: 404 DKTYMQHRYIELF 416
>gi|188528963|ref|NP_001120907.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus
(Silurana) tropicalis]
gi|183986477|gb|AAI66302.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
+VR+RGLP++CT ++ +FF+ I++ + +K GR SGEAF++ ++ AL
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RY+EVF+ + + N G D G+
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVLKH--NSTGDVDTASDGT----------------- 106
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A+ A+
Sbjct: 107 ---VRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENAL 163
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 164 GKHKERIGHRYIEIFKSSRSEIR 186
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +S+I FF I ++HI DG+ATGEA VEF + E+A AM
Sbjct: 282 HFVHMRGLPFRATESDIANFFSPLTPI--RVHIDVGADGRATGEADVEFATHEDAVAAMS 339
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 340 KDKNNMQHRYIELF 353
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 48 YGGGFPPPPSFP---VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVV 103
YGGG F V +RGLPF T+ DI FF+ L + V + V +GR +GEA V
Sbjct: 268 YGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVE 327
Query: 104 FAGPIQVEFALQRDRQNMGRRYVEVF 129
FA A+ +D+ NM RY+E+F
Sbjct: 328 FATHEDAVAAMSKDKNNMQHRYIELF 353
>gi|197246805|gb|AAI68807.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 413
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
+VR+RGLP++CT ++ +FF+ I++ + +K GR SGEAF++ ++ AL
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RY+EVF+ + + N G D G+
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVLKH--NSTGDVDTASDGT----------------- 106
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A+ A+
Sbjct: 107 ---VRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENAL 163
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 164 GKHKERIGHRYIEIFKSSRSEIR 186
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +S+I FF I ++HI DG+ATGEA VEF + E+A AM
Sbjct: 282 HFVHMRGLPFRATESDIANFFSPLTPI--RVHIDVGADGRATGEADVEFATHEDAVAAMS 339
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 340 KDKNNMQHRYIELF 353
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 48 YGGGFPPPPSFP---VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVV 103
YGGG F V +RGLPF T+ DI FF+ L + V + V +GR +GEA V
Sbjct: 268 YGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVE 327
Query: 104 FAGPIQVEFALQRDRQNMGRRYVEVF 129
FA A+ +D+ NM RY+E+F
Sbjct: 328 FATHEDAVAAMSKDKNNMQHRYIELF 353
>gi|345793292|ref|XP_544182.3| PREDICTED: epithelial splicing regulatory protein 1 [Canis lupus
familiaris]
Length = 764
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 309 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 368
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 369 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 409
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 410 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 469
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 470 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 498
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 410 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 469
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 470 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 527
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 528 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 578
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 579 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 610
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 304 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 363
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 364 LALQRHKHHMGTRYIEVYKATGED 387
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 522 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 580
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 581 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 631
>gi|54020837|ref|NP_001005664.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus (Silurana)
tropicalis]
gi|49257786|gb|AAH74690.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Xenopus (Silurana)
tropicalis]
gi|89269950|emb|CAJ83715.1| hnrph1 [Xenopus (Silurana) tropicalis]
Length = 441
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 112/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ +I FF+ I + L + + GR SGEAFV F ++ AL
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 71 KKDRATMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 169 KKHKERIGHRYIEIFKSSRAEVR 191
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 105/239 (43%), Gaps = 52/239 (21%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAG----------- 106
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 107 ------------------------PIQVEFALQR----DRQNMGRRYVEVFR----CKRQ 134
P + F +QR DR GR Y + R +R
Sbjct: 172 KERIGHRYIEIFKSSRAEVRTHYDPPRKLFGMQRPGPYDRPGAGRGYNNLGRGFDRMRRG 231
Query: 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAK--RYNDKDQMEHT--EILKMRGLPFSVKKS 190
Y + Y G + F R RY D + T + MRGLP+ ++
Sbjct: 232 AYGGGYSGYEEYNGYNEYAFGADQRFGRVSDSRYGDGTSFQSTTGHCVHMRGLPYRATET 291
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+I FF + ++HI DG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 292 DIYTFFSPLNPV--RVHIEIGADGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 348
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG G F V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 265 YGDGTSFQSTTGH-CVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEF 323
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 324 ATHEDAVAAMSKDKANMQHRYVELF 348
>gi|291232399|ref|XP_002736133.1| PREDICTED: fusilli-like [Saccoglossus kowalevskii]
Length = 636
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 24/212 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V++ RGLP+ +D D+ KFF GLDI L +N GR +GEA V F + ALQR
Sbjct: 221 VIKARGLPWQSSDKDVAKFFKGLDIGKGGVALCLNPQGRRNGEALVRFTCTEHRDLALQR 280
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV++ +++ A S A + KD
Sbjct: 281 HKHHLGHRYIEVYKATGEEFLKIAAGS----------------SSEASNFLAKDNGH--I 322
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ FF D + E+ + PDG++TG+A+V F + A A
Sbjct: 323 IVRMRGLPFTATAKDVLVFFGDECPVSGAEEGVLFVRYPDGRSTGDAFVLFSTEANATSA 382
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ K K +GSRY+ELF ST E ++ SR +Q
Sbjct: 383 LAKHKENLGSRYIELFRSTTAEVQQVLSRYQQ 414
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T D+ FF V VL V +GR +G+AFV+F+ A
Sbjct: 323 IVRMRGLPFTATAKDVLVFFGDECPVSGAEEGVLFVRYPDGRSTGDAFVLFSTEANATSA 382
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L + ++N+G RY+E+FR + ++ + I + PPP+ + + +
Sbjct: 383 LAKHKENLGSRYIELFRSTTAEVQQVLSRYQQHPLIPNG-----PPPTGSVPILPQQMIT 437
Query: 174 HTEI---LKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ ++MRGLPFS +I++F ++ I +H+ G+ +G+A+++ +S E
Sbjct: 438 SGSVRDCIRMRGLPFSASVEDIMKFLGEFAHYIRPHGVHMVLNQQGRPSGDAFIQMISAE 497
Query: 229 EAKRA--MCKDKMTIGSRYVELFPSTPDE 255
+A A C K +G RY+E+F + DE
Sbjct: 498 KALHAAQQCHRKH-MGERYIEVFQCSGDE 525
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
N + +++ ++K RGLP+ ++ +FFK I + + + P G+ GEA V F
Sbjct: 211 NKHEIVDNDHVIKARGLPWQSSDKDVAKFFKGLDIGKGGVALCLNPQGRRNGEALVRFTC 270
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E A+ + K +G RY+E++ +T +E
Sbjct: 271 TEHRDLALQRHKHHLGHRYIEVYKATGEE 299
>gi|229462862|sp|Q3US41.2|ESRP1_MOUSE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 680
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 443
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 444 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 494
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 495 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 279
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 280 LALQRHKHHMGTRYIEVYKAT 300
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 438 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 496
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 497 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 547
>gi|165972311|ref|NP_918944.2| epithelial splicing regulatory protein 1 [Mus musculus]
Length = 681
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKELLGKRYIELFRSTAAEVQQVLNR 415
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|74183823|dbj|BAE24496.1| unnamed protein product [Mus musculus]
Length = 680
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 443
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 444 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 494
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 495 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 279
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 280 LALQRHKHHMGTRYIEVYKAT 300
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 438 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 496
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 497 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 547
>gi|432852531|ref|XP_004067294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 398
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 29/204 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++CT ++ FF+ DI+ +K GR SGEAF+ + AL
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIMGKINGVCFTYSKEGRPSGEAFLELKTAEDFKNAL 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+DR+ MG RY+EVF+ R SE+++ KR D
Sbjct: 69 AKDRKYMGHRYIEVFKSNR--------SEMDWV---------------LKRNGPADYDSC 105
Query: 175 TE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +L++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A
Sbjct: 106 SGCMLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKA 165
Query: 234 MCKDKMTIGSRYVELFPSTPDEAR 257
+ K K IG RY+E+F S+ +E R
Sbjct: 166 LGKHKERIGHRYIEIFKSSRNEIR 189
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME------HTEILKMRGLPFSVK 188
D YN + G+YD G + Q+E + + MRGLPF
Sbjct: 248 DNYNGFNNYCFGNGMYDERVRGERTGRGMGSHGYGGQVEGGSGYHNGHFVHMRGLPFRAS 307
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ ++ +FF +I ++HI P+GK+TGEA VEF S E+A AM KDK + RY+EL
Sbjct: 308 EGDVAKFFS--PLIPLRVHIDVAPNGKSTGEADVEFRSHEDAVAAMSKDKNHMQHRYIEL 365
Query: 249 F-PSTPDEARRAES 261
F ST A+ + S
Sbjct: 366 FLNSTASGAQTSRS 379
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC---RPDGKATGEAYVEFVSVEE 229
E ++++RGLP+S + E+ FF D I+ KI+ C +G+ +GEA++E + E+
Sbjct: 5 EEGYVVRIRGLPWSCTQEEVASFFSDCDIM-GKINGVCFTYSKEGRPSGEAFLELKTAED 63
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
K A+ KD+ +G RY+E+F S E
Sbjct: 64 FKNALAKDRKYMGHRYIEVFKSNRSE 89
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 39 SASGFQPYGYGGGFPPPPSFP---VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNG 94
+ G +GYGG + V +RGLPF ++ D+ KFF+ L + V + V NG
Sbjct: 272 TGRGMGSHGYGGQVEGGSGYHNGHFVHMRGLPFRASEGDVAKFFSPLIPLRVHIDVAPNG 331
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+ +GEA V F A+ +D+ +M RY+E+F
Sbjct: 332 KSTGEADVEFRSHEDAVAAMSKDKNHMQHRYIELF 366
>gi|37747755|gb|AAH59280.1| Rbm35a protein, partial [Mus musculus]
Length = 490
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 108 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 167
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 168 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 208
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 209 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 268
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 269 LRKHKELLGKRYIELFRSTAAEVQQVLNR 297
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 209 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 268
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 269 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 326
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 327 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 377
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 378 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 409
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 103 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 162
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 163 LALQRHKHHMGTRYIEVYKAT 183
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 321 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 379
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 380 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 430
>gi|148673702|gb|EDL05649.1| RNA binding motif protein 35A, isoform CRA_a [Mus musculus]
Length = 483
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 101 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 160
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 161 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 201
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 202 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 261
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 262 LRKHKELLGKRYIELFRSTAAEVQQVLNR 290
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 202 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 261
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 262 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 319
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 320 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 370
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 371 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 402
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 96 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 155
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 156 LALQRHKHHMGTRYIEVYKAT 176
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 314 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 372
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 373 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 423
>gi|426236209|ref|XP_004012064.1| PREDICTED: epithelial splicing regulatory protein 1 [Ovis aries]
Length = 761
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 310 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 369
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 370 HKHHMGSRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 410
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 411 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 470
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 471 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 499
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 411 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 470
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 471 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIR-- 528
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 529 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 579
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 580 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 611
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 305 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 364
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +GSRY+E++ +T
Sbjct: 365 LALQRHKHHMGSRYIEVYKAT 385
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
F PP + +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 521 FVPPTNIRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQM 579
Query: 105 AGPIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 580 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 611
>gi|410912106|ref|XP_003969531.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 371
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++CT ++ FF+ DI+ +K GR SGEAF+ + AL
Sbjct: 9 VVRIRGLPWSCTQEEVAGFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+DR+ MG RY+EVF+ R SE+++ S P D D
Sbjct: 69 AKDRKYMGHRYIEVFKSNR--------SEMDWV------LKRSGPA-------DYDSCSG 107
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
L++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 108 C-TLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKAL 166
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 167 GKHKERIGHRYIEIFKSSRNEIR 189
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF + ++ +FF + ++HI P+GK+TGEA VEF S E+A AM
Sbjct: 263 HFVHMRGLPFRATEGDVAKFFSPLNPL--RVHIDFAPNGKSTGEADVEFRSHEDAVAAMS 320
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 321 KDKNHMQHRYIELF 334
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ D+ KFF+ L+ + V + NG+ +GEA V F A+ +D+
Sbjct: 265 VHMRGLPFRATEGDVAKFFSPLNPLRVHIDFAPNGKSTGEADVEFRSHEDAVAAMSKDKN 324
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 325 HMQHRYIELF 334
>gi|229485495|sp|B2RYD2.2|ESRP1_RAT RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 677
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 49/223 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--------------- 158
L++ + +G+RY+E+FR + A+EV N F +P
Sbjct: 387 LRKHKDLLGKRYIELFR--------STAAEVQQ---VLNRFSSAPLIPLPTAPIIPVLPQ 435
Query: 159 ---PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
PP+ + + +++RGLP++ +I+ F ++ I +H+
Sbjct: 436 QFVPPTNVR-----------DCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ 484
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
G+ +G+A+++ S + A A K K T+ RYVE+F + +E
Sbjct: 485 GRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP VRLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCVRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
>gi|395818385|ref|XP_003782611.1| PREDICTED: epithelial splicing regulatory protein 1 [Otolemur
garnettii]
Length = 665
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 214 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 273
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 274 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 314
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 315 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 374
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 375 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 403
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 315 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 374
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 375 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 432
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 433 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 483
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 484 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 515
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 209 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 268
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 269 LALQRHKHHMGTRYIEVYKATGED 292
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 427 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 485
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 486 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 515
>gi|383417967|gb|AFH32197.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410224062|gb|JAA09250.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|326928641|ref|XP_003210484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Meleagris gallopavo]
Length = 477
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 27 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 86
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A ND
Sbjct: 87 KKDRETMGHRYVEVFKSN------------NVEMDWVLKHTGPNSPDTA---NDG----- 126
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 127 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 184
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 185 KKHKERIGHRYIEIFKSSRAEVR 207
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 283 RYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 340
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 341 VEFATHEDAVAAMSKDKANMQHRYVELF 368
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+
Sbjct: 299 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 358
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 359 NMQHRYVELF 368
>gi|297299790|ref|XP_002808532.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1-like [Macaca mulatta]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 29/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S + A A C K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHXK-NMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ +NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHXKNMKDRYVEVFQCSAEE 527
>gi|426360257|ref|XP_004047364.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|443682871|gb|ELT87306.1| hypothetical protein CAPTEDRAFT_189098 [Capitella teleta]
Length = 639
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 122/210 (58%), Gaps = 26/210 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+R RGLP+ +D DI +FF GL+I N+ GR +GEA + F + AL++ +
Sbjct: 182 VIRARGLPWQSSDQDIARFFQGLNIA-----NQQGRRNGEALIRFESKEHRDLALRKHKH 236
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
++G+RY+EV+R +D+ N +A N E + R++D + I++
Sbjct: 237 HLGQRYIEVYRASGKDFLN-IAGGNNTEA-----------QAFLSRHSDSG---NQVIVR 281
Query: 180 MRGLPFSVKKSEIVQFFK----DYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
MRGLP++ ++++FF+ ++++ + I + DG+ATG+A+V F + ++A RA
Sbjct: 282 MRGLPYTCTAEQVLEFFRQGEQSVEVLDGDEGILFVHQADGRATGDAFVLFANDDDATRA 341
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ K + +IG+RY+ELF ST E ++ +RS
Sbjct: 342 LSKHRESIGTRYIELFKSTTAEVQQVLNRS 371
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 154 FHGSPPPS-RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
++ SPP S ++ Y + Q T ++K GLPF+V+ ++I+ FF+ ++ + +
Sbjct: 542 WYPSPPVSPQSAYYVSQTQCPTTVVIK--GLPFNVQVADILAFFEGIYEMQPDVQVQRGS 599
Query: 213 DGKATGEAYVEFVSVEEAKRAMC-KDKMTIGSRYVELF 249
DG+ TGEAY+ F S EA+RA+ +++ IG+R+VE+F
Sbjct: 600 DGRLTGEAYITFGSRSEAERAITERNRKVIGNRFVEMF 637
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 19/107 (17%)
Query: 40 ASGFQPYGYGGGFPPPPSFP-------------VVRLRGLPFNCTDIDICKFFAGL-DIV 85
+G+QP Y +P PP P V ++GLPFN DI FF G+ ++
Sbjct: 533 TNGYQPVMYW--YPSPPVSPQSAYYVSQTQCPTTVVIKGLPFNVQVADILAFFEGIYEMQ 590
Query: 86 DVLLVNK--NGRFSGEAFVVFAGPIQVEFAL-QRDRQNMGRRYVEVF 129
+ V + +GR +GEA++ F + E A+ +R+R+ +G R+VE+F
Sbjct: 591 PDVQVQRGSDGRLTGEAYITFGSRSEAERAITERNRKVIGNRFVEMF 637
>gi|194214972|ref|XP_001915056.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Equus caballus]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|417412339|gb|JAA52559.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 697
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 306 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 464
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 465 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 515
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 516 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 241 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 300
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 301 LALQRHKHHMGTRYIEVYKATGED 324
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 459 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 517
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 518 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
>gi|402878739|ref|XP_003903030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Papio anubis]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|296226947|ref|XP_002807679.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1 [Callithrix jacchus]
Length = 676
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|189230098|ref|NP_001121036.2| epithelial splicing regulatory protein 1 [Rattus norvegicus]
gi|187469151|gb|AAI66735.1| RGD1560481 protein [Rattus norvegicus]
Length = 659
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 49/223 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--------------- 158
L++ + +G+RY+E+FR + A+EV N F +P
Sbjct: 387 LRKHKDLLGKRYIELFR--------STAAEVQQ---VLNRFSSAPLIPLPTAPIIPVLPQ 435
Query: 159 ---PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
PP+ + + +++RGLP++ +I+ F ++ I +H+
Sbjct: 436 QFVPPTNVR-----------DCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ 484
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
G+ +G+A+++ S + A A K K T+ RYVE+F + +E
Sbjct: 485 GRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP VRLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCVRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
>gi|296803341|gb|ADH51734.1| ESRP1/RAF1 fusion protein [Homo sapiens]
Length = 1061
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|300795130|ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus]
gi|296480439|tpg|DAA22554.1| TPA: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T ++
Sbjct: 281 LALQRHKHHMGSRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
F PP + +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 437 FVPPTNIRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 105 AGPIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|281351805|gb|EFB27389.1| hypothetical protein PANDA_010030 [Ailuropoda melanoleuca]
Length = 472
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256
VEF + E+A AM KDK + RYVELF ++ A
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 367
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|170763525|ref|NP_001030087.2| epithelial splicing regulatory protein 1 isoform 2 [Homo sapiens]
gi|332830836|ref|XP_003311899.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan
troglodytes]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|297683323|ref|XP_002819332.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Pongo abelii]
Length = 659
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|127799644|gb|AAH99916.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 677
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|348588464|ref|XP_003479986.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Cavia porcellus]
Length = 659
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|417412369|gb|JAA52574.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 701
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 306 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 464
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 465 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 515
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 516 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 241 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 300
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 301 LALQRHKHHMGTRYIEVYKAT 321
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 459 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 517
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 518 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 568
>gi|395739900|ref|XP_003777336.1| PREDICTED: epithelial splicing regulatory protein 1 [Pongo abelii]
Length = 677
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|403295784|ref|XP_003938806.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Saimiri boliviensis boliviensis]
Length = 676
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|402878741|ref|XP_003903031.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Papio anubis]
Length = 659
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|344273261|ref|XP_003408442.1| PREDICTED: epithelial splicing regulatory protein 1 [Loxodonta
africana]
Length = 677
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|148673703|gb|EDL05650.1| RNA binding motif protein 35A, isoform CRA_b [Mus musculus]
Length = 604
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKELLGKRYIELFRSTAAEVQQVLNR 415
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
>gi|156375031|ref|XP_001629886.1| predicted protein [Nematostella vectensis]
gi|156216896|gb|EDO37823.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 106/204 (51%), Gaps = 29/204 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD------VLLVNKNGRFSGEAFVVFAGPIQVEFA 113
VVR RGLP++ T DI FF +IV +GR SGE FV F VE A
Sbjct: 6 VVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGIDGRPSGECFVQFVSEKDVEKA 65
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ + ++MG+RY+EVFR K ++ + PPS D+DQ
Sbjct: 66 LEMNNEHMGKRYIEVFRSKAEEMEWVIKR--------------MGPPS------DRDQ-- 103
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++K+RGLP+ K EI QFF +I+ + I I +GK TGE +VEF S E A +A
Sbjct: 104 -EAVVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQA 162
Query: 234 MCKDKMTIGSRYVELFPSTPDEAR 257
M K K IG RY+E+F S+ + +
Sbjct: 163 MQKHKEKIGHRYIEIFKSSKSDIK 186
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 32/234 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VV+LRGLP+ C+ +I +FF GL+IV + +++ G+ +GE FV FA P A+Q+
Sbjct: 106 VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQAMQK 165
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASE---VNYEGIYDNDFHGSPPPSRAKRYNDK---- 169
++ +G RY+E+F+ + D + + G YD P + D+
Sbjct: 166 HKEKIGHRYIEIFKSSKSDIKYVLKPKPLMSTRPGPYDRMGGPFGGPRFGRGGGDQFERR 225
Query: 170 -----------------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
HT + MRGLPF K++++ QFF +E + + P
Sbjct: 226 GGFGGGRSGGTGGFSGVSSTGHT--VAMRGLPFGAKETDVKQFFMPLNPVE--VRLRWGP 281
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTPDEARRAESRSRQ 265
DG+ GE V+F + +A AM KD+ T+G RY+ELF S+PD ++ S S Q
Sbjct: 282 DGRCCGEGEVDFATHADATAAMSKDRQTMGHRYIELFLNSSPDGSQGGWSGSNQ 335
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVE 228
M++ +++ RGLP+S +I FFKD I+ ++ +H DG+ +GE +V+FVS +
Sbjct: 1 MDNECVVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGIDGRPSGECFVQFVSEK 60
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ ++A+ + +G RY+E+F S +E
Sbjct: 61 DVEKALEMNNEHMGKRYIEVFRSKAEE 87
>gi|355698103|gb|EHH28651.1| RNA-binding protein 35A [Macaca mulatta]
gi|355779831|gb|EHH64307.1| RNA-binding protein 35A [Macaca fascicularis]
Length = 681
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|355686615|gb|AER98118.1| epithelial splicing regulatory protein 1 [Mustela putorius furo]
Length = 561
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 134 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 193
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 194 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 234
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 235 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 294
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 295 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 323
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 31/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 235 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 294
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------PSRAK 164
L++ + +G+RY+E+FR + A+EV N F +P P +
Sbjct: 295 LRKHKDLLGKRYIELFR--------STAAEVQQ---VLNRFSSAPLIPLPTPPMIPVLPQ 343
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYV 222
++ + + +++RGLP++ +I+ F ++ I +H+ G+ +G+A++
Sbjct: 344 QFVPPTNVR--DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFI 401
Query: 223 EFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
+ S + A A K K T+ RYVE+F + +E
Sbjct: 402 QMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 435
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 129 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 188
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 189 LALQRHKHHMGTRYIEVYKAT 209
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 52 FPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVN 91
P PP PV +RLRGLP+ T DI F D+ +++N
Sbjct: 332 LPTPPMIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLN 390
Query: 92 KNGRFSGEAFVVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
GR SG+AF+ + A Q+ ++ M RYVEVF+C ++
Sbjct: 391 HQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 435
>gi|426360259|ref|XP_004047365.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 659
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|34192605|gb|AAH19932.1| ESRP1 protein [Homo sapiens]
Length = 656
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 274 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 333
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 334 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 374
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 375 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 434
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 435 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 463
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 375 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 434
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 435 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 492
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 493 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 543
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 544 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 575
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 269 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 328
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 329 LALQRHKHHMGTRYIEVYKAT 349
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 487 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 545
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 546 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 596
>gi|440897190|gb|ELR48939.1| Heterogeneous nuclear ribonucleoprotein H [Bos grunniens mutus]
Length = 472
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|56790297|ref|NP_060167.2| epithelial splicing regulatory protein 1 isoform 1 [Homo sapiens]
gi|124020999|sp|Q6NXG1.2|ESRP1_HUMAN RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|119612127|gb|EAW91721.1| RNA binding motif protein 35A, isoform CRA_b [Homo sapiens]
gi|127799385|gb|AAH67098.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 681
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|348588462|ref|XP_003479985.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Cavia porcellus]
Length = 681
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|390459519|ref|XP_002744505.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Callithrix
jacchus]
Length = 472
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|45383173|ref|NP_989827.1| heterogeneous nuclear ribonucleoprotein H [Gallus gallus]
gi|33521618|gb|AAQ20009.1| heterogeneous nuclear ribonucleoprotein H1-like protein [Gallus
gallus]
Length = 519
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A ND
Sbjct: 122 KKDRETMGHRYVEVFKSN------------NVEMDWVLKHTGPNSPDTA---NDG----- 161
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 162 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 219
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 220 KKHKERIGHRYIEIFKSSRAEVR 242
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 325 RYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 382
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 383 VEFATHEDAVAAMSKDKANMQHRYVELF 410
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 40 ASGFQPYGYGGGFPPPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRF 96
++G + YG G S V +RGLP+ T+ DI FF+ L+ V V + + +GR
Sbjct: 318 SAGMSDHRYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV 377
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+GEA V FA A+ +D+ NM RYVE+F
Sbjct: 378 TGEADVEFATHEDAVAAMSKDKANMQHRYVELF 410
>gi|338728566|ref|XP_003365697.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Equus caballus]
Length = 659
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|170763529|ref|NP_001116298.1| epithelial splicing regulatory protein 1 isoform 3 [Homo sapiens]
gi|114620965|ref|XP_001143826.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1 [Pan
troglodytes]
Length = 659
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|149061069|gb|EDM11679.1| similar to hypothetical protein FLJ20171 (predicted) [Rattus
norvegicus]
Length = 604
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 49/223 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--------------- 158
L++ + +G+RY+E+FR + A+EV N F +P
Sbjct: 387 LRKHKDLLGKRYIELFR--------STAAEVQQ---VLNRFSSAPLIPLPTAPIIPVLPQ 435
Query: 159 ---PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
PP+ + + +++RGLP++ +I+ F ++ I +H+
Sbjct: 436 QFVPPTNVR-----------DCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ 484
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
G+ +G+A+++ S + A A K K T+ RYVE+F + +E
Sbjct: 485 GRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP VRLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCVRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
>gi|85700309|gb|AAI12044.1| ESRP1 protein [Homo sapiens]
Length = 392
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 73 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 132
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ G A+ + ++Q+
Sbjct: 133 HKHHMGTRYIEVYKATGEDFLKIA---------------GGTSNEVAQFLSKENQV---- 173
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 174 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 233
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 234 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 262
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 174 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 233
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 234 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 291
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 292 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 342
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 343 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 374
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 68 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 127
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 128 LALQRHKHHMGTRYIEVYKATGED 151
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 286 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 344
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 345 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 374
>gi|335286312|ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Sus scrofa]
Length = 681
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVA--SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + + S + P N +D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRD- 445
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 446 -----CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 500
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 AFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|53127638|emb|CAG31148.1| hypothetical protein RCJMB04_2m14 [Gallus gallus]
Length = 492
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A ND
Sbjct: 102 KKDRETMGHRYVEVFKSN------------NVEMDWVLKHTGPNSPDTA---NDG----- 141
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 142 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 199
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 200 KKHKERIGHRYIEIFKSSRAEVR 222
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA A+ +D+
Sbjct: 314 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKA 373
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 374 NMQHRYVELF 383
>gi|261859020|dbj|BAI46032.1| heterogeneous nuclear ribonucleoprotein H1 [synthetic construct]
Length = 472
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|402873628|ref|XP_003919688.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Papio anubis]
Length = 472
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|26353116|dbj|BAC40188.1| unnamed protein product [Mus musculus]
Length = 472
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|156550801|ref|XP_001600558.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Nasonia
vitripennis]
Length = 563
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 29/204 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++ T +I KFF I + +++ GR SGEA++ +E A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMSREGRPSGEAYIEMDSEEDIEKAC 73
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+RDR +MG RY+EVF+ KR + + S +N E + D+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVIKRSCLNLENVMDDG-------------------- 113
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA
Sbjct: 114 ---CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERA 170
Query: 234 MCKDKMTIGSRYVELFPSTPDEAR 257
+ K K IG RY+E+F S+ E R
Sbjct: 171 LQKHKEKIGHRYIEIFRSSLSEVR 194
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 169 KDQMEHTE---ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVE 223
D+ +H E ++K+RGLP+S EI++FF D I K IH+ +G+ +GEAY+E
Sbjct: 3 NDEGDHNEEGFVVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMSREGRPSGEAYIE 62
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
S E+ ++A +D+ +G RY+E+F + E RS
Sbjct: 63 MDSEEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVIKRS 102
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF + +I FF+ I I I G+A+GEA VEF S EEA +AM KD
Sbjct: 298 VHMRGLPFRATEQDIADFFRPLSPI--SIRIILENGGRASGEADVEFASHEEAVKAMSKD 355
Query: 238 KMTIGSRYVELFPST 252
K + RY+ELF ++
Sbjct: 356 KSHMSHRYIELFLNS 370
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG-RFSGEAFVVFAGPIQVEFALQRDR 118
V +RGLPF T+ DI FF L + + ++ +NG R SGEA V FA + A+ +D+
Sbjct: 297 CVHMRGLPFRATEQDIADFFRPLSPISIRIILENGGRASGEADVEFASHEEAVKAMSKDK 356
Query: 119 QNMGRRYVEVF 129
+M RY+E+F
Sbjct: 357 SHMSHRYIELF 367
>gi|256087258|ref|XP_002579790.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350644185|emb|CCD61054.1| heterogeneous nuclear ribonucleoprotein-related [Schistosoma
mansoni]
Length = 1009
Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats.
Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 23/206 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ TD++I +FF+G++I L+++K GR +GEA + FA Q AL++
Sbjct: 375 VVRARGLPWQATDLEIFQFFSGINIAKGGISLVLSKIGRRNGEALIQFADAEQQSLALRK 434
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G+RY+EV+ D+ + E A + K +
Sbjct: 435 HKHHVGKRYIEVYAATGSDFISIAGGE----------------SQEAMNFLGKLTTPNQT 478
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+++MRGLP++ +IV+F K + + I +PDG+ATG+A+V F + A++
Sbjct: 479 LIRMRGLPYTTTPEQIVRFLCILIKIVQFNANGILFVNKPDGRATGDAFVIFETKIVAEK 538
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARR 258
A+ +K IGSRY+ELF STP E +
Sbjct: 539 ALENNKQHIGSRYIELFKSTPAEVNQ 564
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGL-DIVD-----VLLVNK-NGRFSGEAFVVFAGPI 108
P+ ++R+RGLP+ T I +F L IV +L VNK +GR +G+AFV+F I
Sbjct: 475 PNQTLIRMRGLPYTTTPEQIVRFLCILIKIVQFNANGILFVNKPDGRATGDAFVIFETKI 534
Query: 109 QVEFALQRDRQNMGRRYVEVFR 130
E AL+ ++Q++G RY+E+F+
Sbjct: 535 VAEKALENNKQHIGSRYIELFK 556
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D + +++ RGLP+ EI QFF I + I + G+ GEA ++F E+
Sbjct: 368 DTINDNVVVRARGLPWQATDLEIFQFFSGINIAKGGISLVLSKIGRRNGEALIQFADAEQ 427
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
A+ K K +G RY+E++ +T
Sbjct: 428 QSLALRKHKHHVGKRYIEVYAAT 450
>gi|7020094|dbj|BAA90992.1| unnamed protein product [Homo sapiens]
Length = 358
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ G A+ + ++Q+
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLKIA---------------GGTSNEVAQFLSKENQV---- 166
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 26/186 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 284
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 285 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 335
Query: 225 VSVEEA 230
S + A
Sbjct: 336 KSADRA 341
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 61 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 120
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 121 LALQRHKHHMGTRYIEVYKATGED 144
>gi|431892769|gb|ELK03202.1| Heterogeneous nuclear ribonucleoprotein H [Pteropus alecto]
Length = 435
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 112/243 (46%), Gaps = 56/243 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYEGI- 149
++ +G RY+E+F+ R + YN++ +E +
Sbjct: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMR 232
Query: 150 -----------------YDNDFHGSPPPSRA---KRYNDKD---QMEHTEILKMRGLPFS 186
D GS R RY D Q + MRGLP+
Sbjct: 233 RGAYGGGYGGYDDYNGYNDGYGFGSDRFGRGMSDHRYGDGGSTFQSTTGHCVHMRGLPYR 292
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
+++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK + RYV
Sbjct: 293 ATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 350
Query: 247 ELF 249
ELF
Sbjct: 351 ELF 353
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 269 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 328
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 329 ATHEDAVAAMSKDKANMQHRYVELF 353
>gi|48145673|emb|CAG33059.1| HNRPH1 [Homo sapiens]
Length = 449
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSGAEVR 192
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|441595657|ref|XP_004087258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Nomascus leucogenys]
Length = 472
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|397477061|ref|XP_003809903.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Pan paniscus]
gi|426351280|ref|XP_004043181.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Gorilla
gorilla gorilla]
Length = 452
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|148701752|gb|EDL33699.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Mus
musculus]
Length = 485
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 25 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 84
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 85 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 124
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 125 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 182
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 183 KKHKERIGHRYIEIFKSSRAEVR 205
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 288 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 345
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 346 VEFATHEDAVAAMSKDKANMQHRYVELF 373
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 289 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 348
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 349 ATHEDAVAAMSKDKANMQHRYVELF 373
>gi|281352677|gb|EFB28261.1| hypothetical protein PANDA_016305 [Ailuropoda melanoleuca]
Length = 656
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|440905418|gb|ELR55795.1| Epithelial splicing regulatory protein 2, partial [Bos grunniens
mutus]
Length = 759
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 22/207 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 283 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 342
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR--AKRYNDKDQMEH 174
+ +MG RY+EV++ +++ I D H PPP A+ + +DQ+
Sbjct: 343 HKHHMGVRYIEVYKATGEEFVK----------IAGGDSHAPPPPPLEVARFLSREDQV-- 390
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAK 231
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+
Sbjct: 391 --ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQ 448
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARR 258
A+ + K +G RY+ELF ST E ++
Sbjct: 449 AALRRHKGMLGKRYIELFRSTAAEVQQ 475
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 53 PPPPSFPV-----------VRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNG 94
PPPP V +RLRGLPF+ D+ C G D + + + + +G
Sbjct: 373 PPPPPLEVARFLSREDQVILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDG 431
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF 154
R +G+AF +FA + AL+R + +G+RY+E+FR + AS + +
Sbjct: 432 RPTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQPAASFPSSPLLPTLTA 491
Query: 155 HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRP 212
P P +D +++RGLP++ +I+ F + I +H+
Sbjct: 492 PLLPIPFPLAAGTGRD------CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQ 545
Query: 213 DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
G+ +G+A+++ S E A A + K + RYVE+ P + +E R
Sbjct: 546 QGRPSGDAFIQMTSAERALAAAQRCHKKAMKERYVEVVPCSTEEMSR 592
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 273 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 332
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 333 SEQRDLALQRHKHHMGVRYIEVYKATGEE 361
>gi|441595654|ref|XP_003279600.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Nomascus leucogenys]
Length = 452
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|410987481|ref|XP_004000029.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Felis catus]
Length = 659
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|338728568|ref|XP_003365698.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Equus caballus]
Length = 604
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|410987479|ref|XP_004000028.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Felis catus]
Length = 677
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|351713464|gb|EHB16383.1| Epithelial splicing regulatory protein 1 [Heterocephalus glaber]
Length = 677
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 25/211 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 220 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 279
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 280 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 320
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 321 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 380
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
+ K K +G RY+ELF ST E + + +R
Sbjct: 381 LRKHKDLLGKRYIELFRSTAAEVQVVQVLNR 411
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 47/223 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 321 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 380
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--------------- 158
L++ + +G+RY+E+FR + A+EV + N F +P
Sbjct: 381 LRKHKDLLGKRYIELFR--------STAAEVQVVQVL-NRFSSAPLIPLPTPPIIPVLPQ 431
Query: 159 ---PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
PP+ + + +++RGLP++ +I+ F ++ I +H+
Sbjct: 432 QFVPPTNVR-----------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ 480
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
G+ +G+A+++ S + A A K K T+ RYVE+F + +E
Sbjct: 481 GRPSGDAFIQMKSADRAFMASQKCHKKTMKDRYVEVFQCSAEE 523
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 213 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 272
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 273 RDLALQRHKHHMGTRYIEVYKATGED 298
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 435 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 493
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 494 ADRAFMASQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 544
>gi|301782433|ref|XP_002926629.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Ailuropoda melanoleuca]
Length = 677
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|120538378|gb|AAI29088.1| Hnrph1 protein [Rattus norvegicus]
Length = 429
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|417412016|gb|JAA52424.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 627
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 306 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 464
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 465 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 515
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 516 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 547
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 241 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 300
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 301 LALQRHKHHMGTRYIEVYKAT 321
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 459 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 517
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 518 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 568
>gi|170763527|ref|NP_001116297.1| epithelial splicing regulatory protein 1 isoform 4 [Homo sapiens]
Length = 608
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|62078769|ref|NP_001014041.1| heterogeneous nuclear ribonucleoprotein H2 [Rattus norvegicus]
gi|81910860|sp|Q6AY09.1|HNRH2_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|50927747|gb|AAH79240.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Rattus norvegicus]
gi|149055432|gb|EDM07016.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
gi|149055433|gb|EDM07017.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
Length = 449
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|5031753|ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|300794637|ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus]
gi|381342476|ref|NP_001244222.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|73970381|ref|XP_857122.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 19
[Canis lupus familiaris]
gi|109080078|ref|XP_001099955.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 7
[Macaca mulatta]
gi|114603795|ref|XP_001150460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2 [Pan
troglodytes]
gi|291410134|ref|XP_002721348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Oryctolagus cuniculus]
gi|301771512|ref|XP_002921169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Ailuropoda melanoleuca]
gi|311249564|ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa]
gi|348551747|ref|XP_003461691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Cavia
porcellus]
gi|403307005|ref|XP_003944005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Saimiri boliviensis boliviensis]
gi|403307007|ref|XP_003944006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Saimiri boliviensis boliviensis]
gi|410947937|ref|XP_003980698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Felis catus]
gi|426228702|ref|XP_004008435.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Ovis aries]
gi|1710632|sp|P31943.4|HNRH1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|347314|gb|AAA91346.1| hnRNP H [Homo sapiens]
gi|12655001|gb|AAH01348.1| HNRPH1 protein [Homo sapiens]
gi|119574192|gb|EAW53807.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|119574193|gb|EAW53808.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|193784895|dbj|BAG54048.1| unnamed protein product [Homo sapiens]
gi|296486243|tpg|DAA28356.1| TPA: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos taurus]
Length = 449
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|426360261|ref|XP_004047366.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 604
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|395853398|ref|XP_003799198.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Otolemur garnettii]
gi|395853400|ref|XP_003799199.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Otolemur garnettii]
gi|395853402|ref|XP_003799200.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 3
[Otolemur garnettii]
Length = 449
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|297683325|ref|XP_002819333.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Pongo abelii]
Length = 604
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|403295786|ref|XP_003938807.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 603
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|170763533|ref|NP_001116299.1| epithelial splicing regulatory protein 1 isoform 5 [Homo sapiens]
gi|114620967|ref|XP_001143905.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2 [Pan
troglodytes]
Length = 604
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|10946928|ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|46396669|sp|O35737.3|HNRH1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|2253041|emb|CAA74583.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|33604202|gb|AAH56224.1| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|37589940|gb|AAH42187.2| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|74149585|dbj|BAE36421.1| unnamed protein product [Mus musculus]
gi|148701754|gb|EDL33701.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_d [Mus
musculus]
gi|149052456|gb|EDM04273.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Rattus
norvegicus]
Length = 449
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|335286314|ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Sus scrofa]
Length = 608
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVA--SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + + S + P N +D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRD- 445
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S +
Sbjct: 446 -----CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADR 500
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 AFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F D+ +++N GR SG+AF+ + A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|148688440|gb|EDL20387.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_b [Mus
musculus]
Length = 460
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 23 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 82
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 83 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 122
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 123 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 180
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 181 KKHKERIGHRYIEIFKSSRAEVR 203
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 286 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 343
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 344 VEFATHEDAVAAMAKDKANMQHRYVELF 371
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 287 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 346
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 347 ATHEDAVAAMAKDKANMQHRYVELF 371
>gi|115496520|ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|109892458|sp|Q3SZF3.1|HNRH2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|74354329|gb|AAI02895.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Bos taurus]
Length = 449
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|402878743|ref|XP_003903032.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Papio anubis]
Length = 604
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++NM RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|9845253|ref|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus musculus]
gi|354474917|ref|XP_003499676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Cricetulus griseus]
gi|354474919|ref|XP_003499677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Cricetulus griseus]
gi|46577330|sp|P70333.1|HNRH2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1666700|gb|AAB47243.1| Murine homolog of human ftp-3 [Mus musculus]
gi|13529467|gb|AAH05461.1| Hnrph2 protein [Mus musculus]
gi|26346655|dbj|BAC36976.1| unnamed protein product [Mus musculus]
gi|74139495|dbj|BAE40886.1| unnamed protein product [Mus musculus]
gi|74207684|dbj|BAE40087.1| unnamed protein product [Mus musculus]
gi|74211079|dbj|BAE37634.1| unnamed protein product [Mus musculus]
gi|148688439|gb|EDL20386.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|148688441|gb|EDL20388.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|344238071|gb|EGV94174.1| Heterogeneous nuclear ribonucleoprotein H2 [Cricetulus griseus]
Length = 449
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|126290596|ref|XP_001369385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Monodelphis
domestica]
Length = 449
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|344250517|gb|EGW06621.1| Epithelial splicing regulatory protein 1 [Cricetulus griseus]
Length = 677
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 25/205 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 74 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 133
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 134 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 174
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 175 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 234
Query: 234 MCKDKMTIGSRYVELFPSTPDEARR 258
+ K K +G RY+ELF ST E ++
Sbjct: 235 LRKHKDLLGKRYIELFRSTAAEVQQ 259
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 67 ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 126
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 127 RDLALQRHKHHMGTRYIEVYKATGED 152
>gi|390361159|ref|XP_798587.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 3
[Strongylocentrotus purpuratus]
Length = 500
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 30/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFA------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR RGLP++ T DI FF+ G D V + + GR SGE FVVF V
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHL-PGGRPSGECFVVFESHDDVLKG 65
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+++ ++G RY+EVFR K SE+ + R DK + E
Sbjct: 66 LKKNNNHIGHRYIEVFRSKN--------SEMEW---------------VTSRGGDKAKEE 102
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLPF + +I FFK+Y+I ED I + DG++TGEAYV+FVS + A+ A
Sbjct: 103 NDGCVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGA 162
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAES 261
+ K K +G RY+E+F E +R S
Sbjct: 163 LSKHKANMGHRYIEVFQCNASEIKRFNS 190
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++ RGLP+S +IV FF + +IE D + P G+ +GE +V F S ++ +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSE-SVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKG 65
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K+ IG RY+E+F S E SR
Sbjct: 66 LKKNNNHIGHRYIEVFRSKNSEMEWVTSR 94
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDY----KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ MRGLP+ + +I QFF ++ K+ +G++TGEA +F +VE A+ A
Sbjct: 317 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKV------NGRSTGEADADFQTVEAAQAA 370
Query: 234 MCKDKMTIGSRYVELFPST 252
M K K +G RY+ELF +T
Sbjct: 371 MTKHKSEMGPRYIELFLNT 389
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGL-DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +RGLP+ T+ DI +FF +V++ NGR +GEA F + A+ + +
Sbjct: 317 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHKS 376
Query: 120 NMGRRYVEVF 129
MG RY+E+F
Sbjct: 377 EMGPRYIELF 386
>gi|410989009|ref|XP_004000762.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Felis catus]
Length = 432
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|301788126|ref|XP_002929479.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Ailuropoda melanoleuca]
gi|344306831|ref|XP_003422087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Loxodonta africana]
Length = 432
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|9624998|ref|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|74099697|ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|197100479|ref|NP_001125156.1| heterogeneous nuclear ribonucleoprotein H2 [Pongo abelii]
gi|302565696|ref|NP_001180922.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|350536397|ref|NP_001233423.1| heterogeneous nuclear ribonucleoprotein H2 [Pan troglodytes]
gi|109131568|ref|XP_001094080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Macaca mulatta]
gi|296236002|ref|XP_002763136.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Callithrix jacchus]
gi|332254772|ref|XP_003276506.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Nomascus
leucogenys]
gi|390480025|ref|XP_003735831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Callithrix
jacchus]
gi|403298789|ref|XP_003940188.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Saimiri boliviensis boliviensis]
gi|403298791|ref|XP_003940189.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Saimiri boliviensis boliviensis]
gi|426396685|ref|XP_004064561.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Gorilla gorilla gorilla]
gi|426396687|ref|XP_004064562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Gorilla gorilla gorilla]
gi|426396689|ref|XP_004064563.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Gorilla gorilla gorilla]
gi|2500576|sp|P55795.1|HNRH2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=FTP-3; AltName:
Full=Heterogeneous nuclear ribonucleoprotein H';
Short=hnRNP H'
gi|75070864|sp|Q5RD26.1|HNRH2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1684915|gb|AAB64202.1| FTP3 [Homo sapiens]
gi|55727150|emb|CAH90331.1| hypothetical protein [Pongo abelii]
gi|119623269|gb|EAX02864.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660030|gb|AAI30346.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660336|gb|AAI30344.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|168277748|dbj|BAG10852.1| heterogeneous nuclear ribonucleoprotein H' [synthetic construct]
gi|313883006|gb|ADR82989.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|313883348|gb|ADR83160.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|343958876|dbj|BAK63293.1| heterogeneous nuclear ribonucleoprotein H' [Pan troglodytes]
gi|380812318|gb|AFE78033.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|384946774|gb|AFI36992.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410264162|gb|JAA20047.1| RPL36A-HNRNPH2 readthrough [Pan troglodytes]
gi|410303792|gb|JAA30496.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410303794|gb|JAA30497.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355365|gb|JAA44286.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355367|gb|JAA44287.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|444525895|gb|ELV14190.1| Epithelial splicing regulatory protein 1, partial [Tupaia
chinensis]
Length = 689
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 25/205 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 237 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 296
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 297 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 337
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 338 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 397
Query: 234 MCKDKMTIGSRYVELFPSTPDEARR 258
+ K K +G RY+ELF ST E ++
Sbjct: 398 LRKHKDLLGKRYIELFRSTAAEVQK 422
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 338 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 397
Query: 114 LQRDRQNMGRRYVEVFRCKRQDY--------YNAVASEVNYEGIYDNDFHGSP----PPS 161
L++ + +G+RY+E+FR + N +S P PP+
Sbjct: 398 LRKHKDLLGKRYIELFRSTAAEVQKVFKIQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPT 457
Query: 162 RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGE 219
+ + +++RGLP++ +I+ F ++ I +H+ G+ +G+
Sbjct: 458 NVR-----------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGD 506
Query: 220 AYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A+++ S + A A K K T+ RYVE+F + +E
Sbjct: 507 AFIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 543
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 232 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 291
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 292 LALQRHKHHMGTRYIEVYKAT 312
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 455 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 513
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 514 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 564
>gi|26334977|dbj|BAC31189.1| unnamed protein product [Mus musculus]
Length = 500
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 212 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 271
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 272 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 312
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 313 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 372
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 373 LRKHKELLGKRYIELFRSTAAEVQQVLNR 401
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 313 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 372
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 373 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 430
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY 199
+ +++RGLP++ +I+ F ++
Sbjct: 431 ---------DCIRLRGLPYAATIEDILDFLGEF 454
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 207 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 266
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 267 LALQRHKHHMGTRYIEVYKATGED 290
>gi|149755198|ref|XP_001493828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Equus
caballus]
gi|291393212|ref|XP_002713068.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Oryctolagus
cuniculus]
gi|291408077|ref|XP_002720410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Oryctolagus cuniculus]
gi|281341597|gb|EFB17181.1| hypothetical protein PANDA_019663 [Ailuropoda melanoleuca]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|417401138|gb|JAA47465.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|426257857|ref|XP_004022538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Ovis aries]
gi|146231796|gb|ABQ12973.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|296471005|tpg|DAA13120.1| TPA: heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|440901707|gb|ELR52599.1| Heterogeneous nuclear ribonucleoprotein H2 [Bos grunniens mutus]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|395861473|ref|XP_003803009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Otolemur
garnettii]
Length = 432
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE-GIYDNDFHGSPPPSRA 163
A A+ +D+ NM RYVE+F N+ A G YD+ G S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF-------LNSTAGTTGASGGAYDSQMMGGMGLSNQ 388
Query: 164 KRY 166
Y
Sbjct: 389 SSY 391
>gi|410914042|ref|XP_003970497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 406
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+G I++ + GR SGEAFV ++ A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKIINNGGAIHFTYTREGRPSGEAFVEMESEEDLKVAV 66
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A
Sbjct: 67 KKDRETMGHRYVEVFKSN------------NVEMDWVMKHTGPNCPGTAG---------- 104
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 105 DGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 165 KKHKERIGHRYIEIFKSSRAEVR 187
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 109/220 (49%), Gaps = 32/220 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++RLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 107 LIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 117 DRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYEGI 149
++ +G RY+E+F+ R + YN + +Y+ +
Sbjct: 167 HKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYDRPSGGRGYNMMGRGGSYDRM 226
Query: 150 YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
+ G R Q + MRGLP+ +++I FF + ++HI
Sbjct: 227 RRGGYGGGYSDGRYGDGGSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPV--RVHIE 284
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 285 VGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 324
>gi|74007970|ref|XP_861916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Canis lupus familiaris]
gi|345807788|ref|XP_862053.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 7
[Canis lupus familiaris]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|348570626|ref|XP_003471098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Cavia
porcellus]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|432101976|gb|ELK29797.1| Heterogeneous nuclear ribonucleoprotein H2 [Myotis davidii]
Length = 449
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|334326246|ref|XP_001379501.2| PREDICTED: epithelial splicing regulatory protein 1 [Monodelphis
domestica]
Length = 677
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVA--SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L++ + +G+RY+E+FR + + S + P N +D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSTPLIPLPTPPIIPVLPQQFVTPTNVRD- 445
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++RGLP++ +I++F ++ I +H+ G+ +G+A+++ S +
Sbjct: 446 -----CIRLRGLPYAATIEDILEFLGEFSTAIQTHGVHMVLNHQGRPSGDAFIQMKSADR 500
Query: 230 AKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 AFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|327265516|ref|XP_003217554.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Anolis
carolinensis]
Length = 490
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ + + GR SGEAFV V+ AL
Sbjct: 42 VVKVRGLPWSCSADEVQRFFSECKILNGSSGVRFIYTREGRPSGEAFVELETEEDVKSAL 101
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A ND
Sbjct: 102 KKDRETMGHRYVEVFKSN------------NVEMDWVLKHTGPNSPDTA---NDG----- 141
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 142 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 199
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 200 KKHKERIGHRYIEIFKSSRAEVR 222
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 107/243 (44%), Gaps = 56/243 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAG----------- 106
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA
Sbjct: 143 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 202
Query: 107 ------------------------PIQVEFALQR----DRQNMGRRYVEVFR------CK 132
P + A+QR DR +GR Y + R +
Sbjct: 203 KERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGVGRGYNSLGRGSGFERMR 262
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRA---KRYNDKD---QMEHTEILKMRGLPFS 186
R Y +Y G D GS R RY D Q + MRGLP+
Sbjct: 263 RGAYGGGYGGYDDYNGYNDGYGFGSDRFGRGISDHRYGDGSSTFQSTTGHCVHMRGLPYR 322
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
+++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK + RYV
Sbjct: 323 ATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 380
Query: 247 ELF 249
ELF
Sbjct: 381 ELF 383
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG G + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 299 YGDGSSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 358
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 359 ATHEDAVAAMSKDKANMQHRYVELF 383
>gi|355691923|gb|EHH27108.1| hypothetical protein EGK_17225 [Macaca mulatta]
Length = 472
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KEDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|147906713|ref|NP_001086923.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|50417963|gb|AAH77770.1| Hnrph2-prov protein [Xenopus laevis]
gi|84569955|gb|AAI10708.1| Hnrph2 protein [Xenopus laevis]
Length = 456
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ +I FF+ I + L + + GR SGEAFV F ++ L
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 71 KKDRATMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 169 KKHKERIGHRYIEIFKSSRAEVR 191
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 109/239 (45%), Gaps = 52/239 (21%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 118 RQNMGRRYVEVF-------------------------------------------RCKRQ 134
++ +G RY+E+F R +R
Sbjct: 172 KERIGHRYIEIFKSSRAEVRTHYDPPRKLFGMQRPGPYDRPGAGRGYNNLGRGFDRMRRG 231
Query: 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAK--RYNDKDQMEHT--EILKMRGLPFSVKKS 190
Y + +Y G + F R RY D + T + MRGLP+ ++
Sbjct: 232 AYGGGYSGYEDYNGYNEYAFGTDQRFGRVSDSRYGDGTSFQSTTGHCVHMRGLPYRATET 291
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+I FF + ++HI DG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 292 DIYTFFSPLNPV--RVHIEIGADGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 348
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG G F V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 265 YGDGTSFQSTTGH-CVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEF 323
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 324 ATHEDAVAAMSKDKANMQHRYVELF 348
>gi|410987483|ref|XP_004000030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Felis catus]
Length = 604
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 281 LALQRHKHHMGTRYIEVYKATGED 304
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
>gi|345326895|ref|XP_001507064.2| PREDICTED: epithelial splicing regulatory protein 1, partial
[Ornithorhynchus anatinus]
Length = 605
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 154 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 213
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 214 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 254
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+ FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 255 IVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 314
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 315 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 343
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 255 IVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 314
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 315 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 372
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 373 ---------DCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 423
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 424 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 455
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 147 ELIDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 206
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 207 RDLALQRHKHHMGNRYIEVYKATGED 232
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI +F D+ +++N GR SG+AF+
Sbjct: 367 PPTNVRDCIRLRGLPYAATIEDILEFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 425
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 426 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 455
>gi|390361161|ref|XP_003729859.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 515
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 30/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFA------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR RGLP++ T DI FF+ G D V + + GR SGE FVVF V
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHL-PGGRPSGECFVVFESHDDVLKG 65
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+++ ++G RY+EVFR K SE+ + R DK + E
Sbjct: 66 LKKNNNHIGHRYIEVFRSKN--------SEMEW---------------VTSRGGDKAKEE 102
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLPF + +I FFK+Y+I ED I + DG++TGEAYV+FVS + A+ A
Sbjct: 103 NDGCVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGA 162
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAES 261
+ K K +G RY+E+F E +R S
Sbjct: 163 LSKHKANMGHRYIEVFQCNASEIKRFNS 190
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++ RGLP+S +IV FF + +IE D + P G+ +GE +V F S ++ +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSE-SVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKG 65
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K+ IG RY+E+F S E SR
Sbjct: 66 LKKNNNHIGHRYIEVFRSKNSEMEWVTSR 94
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDY----KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ MRGLP+ + +I QFF ++ K+ +G++TGEA +F +VE A+ A
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKV------NGRSTGEADADFQTVEAAQAA 385
Query: 234 MCKDKMTIGSRYVELFPST 252
M K K +G RY+ELF +T
Sbjct: 386 MTKHKSEMGPRYIELFLNT 404
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGL-DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +RGLP+ T+ DI +FF +V++ NGR +GEA F + A+ + +
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHKS 391
Query: 120 NMGRRYVEVF 129
MG RY+E+F
Sbjct: 392 EMGPRYIELF 401
>gi|402911169|ref|XP_003918213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Papio anubis]
Length = 256
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
>gi|384946772|gb|AFI36991.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMA 346
Query: 236 KDKMTIGSRYVELF 249
KDK + RYVELF
Sbjct: 347 KDKANMQHRYVELF 360
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 41 SGFQPYGYGGGFPPPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
SG +G G G S V +RGLP+ T+ DI FF+ L+ + V + + +GR +
Sbjct: 269 SGMSDHGCGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V FA A+ +D+ NM RYVE+F
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELF 360
>gi|119574194|gb|EAW53809.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_b [Homo
sapiens]
Length = 393
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
VEF + E+A AM KDK + RYVELF ++
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELFLNS 363
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|390361163|ref|XP_003729860.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 521
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 30/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFA------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR RGLP++ T DI FF+ G D V + + GR SGE FVVF V
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHL-PGGRPSGECFVVFESHDDVLKG 65
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+++ ++G RY+EVFR K SE+ + R DK + E
Sbjct: 66 LKKNNNHIGHRYIEVFRSKN--------SEMEW---------------VTSRGGDKAKEE 102
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLPF + +I FFK+Y+I ED I + DG++TGEAYV+FVS + A+ A
Sbjct: 103 NDGCVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGA 162
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAES 261
+ K K +G RY+E+F E +R S
Sbjct: 163 LSKHKANMGHRYIEVFQCNASEIKRFNS 190
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++ RGLP+S +IV FF + +IE D + P G+ +GE +V F S ++ +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSE-SVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKG 65
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K+ IG RY+E+F S E SR
Sbjct: 66 LKKNNNHIGHRYIEVFRSKNSEMEWVTSR 94
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDY----KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ MRGLP+ + +I QFF ++ K+ +G++TGEA +F +VE A+ A
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKV------NGRSTGEADADFQTVEAAQAA 385
Query: 234 MCKDKMTIGSRYVELFPST 252
M K K +G RY+ELF +T
Sbjct: 386 MTKHKSEMGPRYIELFLNT 404
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGL-DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +RGLP+ T+ DI +FF +V++ NGR +GEA F + A+ + +
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHKS 391
Query: 120 NMGRRYVEVF 129
MG RY+E+F
Sbjct: 392 EMGPRYIELF 401
>gi|344265353|ref|XP_003404749.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Loxodonta
africana]
Length = 449
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|359063387|ref|XP_002685850.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 1157
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ D DI +FF GL+I L +N G+ +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N + + E+
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLSK-------------------ENQV 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP+ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +GSRY+E++ +T
Sbjct: 281 LALQRHKHHMGSRYIEVYKAT 301
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
F PP + +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 437 FVPPTNIRDCIRLRGLPYVATTEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 105 AGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|291243063|ref|XP_002741419.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Saccoglossus kowalevskii]
Length = 628
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 122/258 (47%), Gaps = 46/258 (17%)
Query: 25 QRMMEPNPYFA----VSSSASGFQPYGYGGGFPP-PPSFP-------------VVRLRGL 66
Q ++ NP F +S S+ F + FPP PP P V+R RGL
Sbjct: 43 QILLTDNPAFTGKRFLSGSSVKFGRWFDDEEFPPLPPYDPNQKFSMVDHDDGNVIRARGL 102
Query: 67 PFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
P++ T ++ FF G I + + GR SGE F+ V+ AL+R +M
Sbjct: 103 PWSATADEVRSFFKGCKIAETENGIKFTYTREGRPSGECFIELETEEDVKVALERHNDHM 162
Query: 122 GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMR 181
G RYVEVFR K+ + + V + DND +++R
Sbjct: 163 GHRYVEVFRSKKSEM-DWVIKRSGPNAVQDND----------------------GCVRLR 199
Query: 182 GLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTI 241
GLPF K EI QFF +I+ + I + G++TGEAYV+F + + A+ A+ K K I
Sbjct: 200 GLPFGCSKEEIAQFFGGLEIVANGITLPTDYHGRSTGEAYVQFSTKDIAENALGKHKERI 259
Query: 242 GSRYVELFPSTPDEARRA 259
G RY+E+F S+ +E R+A
Sbjct: 260 GHRYIEIFKSSKEEVRQA 277
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV L + +GR +GEA+V F+ E AL +
Sbjct: 196 VRLRGLPFGCSKEEIAQFFGGLEIVANGITLPTDYHGRSTGEAYVQFSTKDIAENALGKH 255
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVA 141
++ +G RY+E+F+ +++ A+
Sbjct: 256 KERIGHRYIEIFKSSKEEVRQALG 279
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++ MRGLPF EI QFF+ + K+HI G+ATGEA VEF + E+A M
Sbjct: 426 HVIHMRGLPFRATDQEIRQFFQ--PVNPTKVHIQYESGGRATGEADVEFATHEDAVAGMS 483
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 484 KDKAHMQHRYIELF 497
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V+ +RGLPF TD +I +FF ++ V + GR +GEA V FA + +D+
Sbjct: 427 VIHMRGLPFRATDQEIRQFFQPVNPTKVHIQYESGGRATGEADVEFATHEDAVAGMSKDK 486
Query: 119 QNMGRRYVEVFRCKRQ 134
+M RY+E+F Q
Sbjct: 487 AHMQHRYIELFLNSSQ 502
>gi|47086853|ref|NP_997754.1| heterogeneous nuclear ribonucleoprotein H1, like [Danio rerio]
gi|28278402|gb|AAH44161.1| Zgc:85960 [Danio rerio]
gi|182891430|gb|AAI64507.1| Zgc:85960 protein [Danio rerio]
Length = 407
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+G I + GR SGEAFV ++ A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RYVEVF+ ++ V + + + P + E
Sbjct: 68 KKDRESMGHRYVEVFK----------SNNVEMDWVLKHTGPNCP------------ETEG 105
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 106 DGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKAL 165
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 166 KKHKERIGHRYIEIFKSSRAEVR 188
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 111/220 (50%), Gaps = 32/220 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 117 DRQNMGRRYVEVFRCKRQD---YYNAVASEVNYE--GIYD---NDFHGSPPPSRA----- 163
++ +G RY+E+F+ R + +Y + + G YD G SR
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFDR 227
Query: 164 ------------KRYNDKDQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
RY D + T + MRGLP+ + +I FF + ++HI
Sbjct: 228 MRRGGYGGGVSDGRYGDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSPLNPV--RVHIE 285
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
PDG+ TGEA VEF + E+A AM DK + RYVELF
Sbjct: 286 IGPDGRVTGEADVEFATHEDAVAAMSNDKANMQHRYVELF 325
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG F V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 242 YGDGGNFQSTTGH-CVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 300
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ D+ NM RYVE+F
Sbjct: 301 ATHEDAVAAMSNDKANMQHRYVELF 325
>gi|380792639|gb|AFE68195.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 269
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAPGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
>gi|324507711|gb|ADY43264.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 435
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 119/237 (50%), Gaps = 49/237 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRG+PF+ T DI +FF+GLD+ DV++ + GR SGEAFV A E AL+R++
Sbjct: 112 VVRLRGIPFSATVADIKEFFSGLDVADVVIDKEPGGRPSGEAFVRLANKQHAEMALERNK 171
Query: 119 QNMGRRYVEVFRCKRQDYYNA-VASEVNYEGIY--------------------DNDFHGS 157
+NMG RYVEVFR ++ NA + + G++ D +G+
Sbjct: 172 KNMGTRYVEVFRSSGEEMENAQYTTAASRRGMFPAPRGEPIPLRGLMAAGGYRDRYGYGA 231
Query: 158 PPPSRA-----------------KRYNDKDQMEHTEILK--------MRGLPFSVKKSEI 192
P RA RY ++L MRGLP++ +I
Sbjct: 232 GGPMRAPMGRGRPGPYDVPYDRFSRYGGGFGGYEEDVLDYDVSTKVYMRGLPYNANALDI 291
Query: 193 VQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
FFK +E I + D + +G+AYV F ++ EA+ A+ ++K +IG+RY+ELF
Sbjct: 292 EDFFKPLNCVE--IRLGYNEDRRPSGDAYVLFSTMAEARDALSRNKKSIGTRYIELF 346
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 18/201 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VRLRGLPF+ + D+ F GL + V + GR SGE +V VE A + D++
Sbjct: 10 VRLRGLPFSAKEDDVRNFLQGLYVRSVTFTLTATGRASGECYVELTDAAAVEEAKKFDKK 69
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
M RY+EVF + V+ + + I D +G+ + + +++
Sbjct: 70 EMSSRYIEVFSVSESE----VSWMIRHGVIKSADSNGTSTGT-----------SNNYVVR 114
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+RG+PFS ++I +FF + + + I P G+ +GEA+V + + A+ A+ ++K
Sbjct: 115 LRGIPFSATVADIKEFFSGLDVAD--VVIDKEPGGRPSGEAFVRLANKQHAEMALERNKK 172
Query: 240 TIGSRYVELFPSTPDEARRAE 260
+G+RYVE+F S+ +E A+
Sbjct: 173 NMGTRYVEVFRSSGEEMENAQ 193
>gi|148886840|sp|Q8VHV7.2|HNRH1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; AltName: Full=Ratsg1; Contains: RecName:
Full=Heterogeneous nuclear ribonucleoprotein H,
N-terminally processed
Length = 449
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF + EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>gi|431917858|gb|ELK17089.1| Epithelial splicing regulatory protein 1 [Pteropus alecto]
Length = 680
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 193 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 252
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 253 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 293
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 294 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 353
Query: 234 MCKDKMTIGSRYVELFPSTPDEA 256
+ K K +G RY+ELF ST +A
Sbjct: 354 LRKHKDLLGKRYIELFRSTAADA 376
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 188 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 247
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 248 LALQRHKHHMGTRYIEVYKATGED 271
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 442 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 500
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 501 ADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 530
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S + A A
Sbjct: 448 DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMA 507
Query: 234 MCK-DKMTIGSRYVELFPSTPDE 255
K K T+ RYVE+F + +E
Sbjct: 508 AQKCHKKTMKDRYVEVFQCSAEE 530
>gi|358420736|ref|XP_001789374.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
gi|296490145|tpg|DAA32258.1| TPA: fusilli-like [Bos taurus]
Length = 767
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ D DI +FF GL+I L +N G+ +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP+ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +GSRY+E++ +T
Sbjct: 281 LALQRHKHHMGSRYIEVYKAT 301
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
F PP + +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 437 FVPPTNIRDCIRLRGLPYVATTEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 105 AGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|351712921|gb|EHB15840.1| Heterogeneous nuclear ribonucleoprotein H2 [Heterocephalus glaber]
Length = 416
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTAGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG R+VE+F S+ E R
Sbjct: 170 KKHKERIGHRHVEIFKSSRAEVR 192
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|440906249|gb|ELR56534.1| Epithelial splicing regulatory protein 1, partial [Bos grunniens
mutus]
Length = 715
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 106/202 (52%), Gaps = 25/202 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 263 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 322
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 323 HKHHMGSRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 363
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 364 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 423
Query: 234 MCKDKMTIGSRYVELFPSTPDE 255
+ K K +G RY+ELF ST E
Sbjct: 424 LRKHKDLLGKRYIELFRSTAAE 445
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 24/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 364 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 423
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRYNDK 169
L++ + +G+RY+E+FR + N +S P PP+ +
Sbjct: 424 LRKHKDLLGKRYIELFRSTAAEVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIR----- 478
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S
Sbjct: 479 ------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSA 532
Query: 228 EEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
+ A A K K T+ RYVE+F + +E
Sbjct: 533 DRAFMAAQKCHKKTMKDRYVEVFQCSAEE 561
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 258 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 317
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +GSRY+E++ +T
Sbjct: 318 LALQRHKHHMGSRYIEVYKAT 338
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
F PP + +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 471 FVPPTNIRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQM 529
Query: 105 AGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 530 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 582
>gi|397500915|ref|XP_003821148.1| PREDICTED: epithelial splicing regulatory protein 1-like [Pan
paniscus]
Length = 422
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 25/206 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ G A+ + ++Q+
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIA---------------GGTSNEVAQFLSKENQV---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRA 259
+ K K +G RY+ELF ST E ++
Sbjct: 386 LRKHKDLLGKRYIELFRSTAAEVQQV 411
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 279
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 280 LALQRHKHHMGTRYIEVYKATGED 303
>gi|328779875|ref|XP_397080.4| PREDICTED: epithelial splicing regulatory protein 2 [Apis
mellifera]
Length = 1215
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 757 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKR 816
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ V G + H SR +
Sbjct: 817 HKHHMGGRYIEVYKASGEDF-------VGVAGGTSGEAHAFL--SRGAQV---------- 857
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++V FF K ++ ED + +PDG+ATG+A+V F E+A
Sbjct: 858 IVRMRGLPYDCVAKQVVXFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 917
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +R+
Sbjct: 918 VKALSKHRDCIGSRYIELFRSTIAEVQQVLNRA 950
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++++ +++ RGLP+ +I +FF+ + + + + P G+ GEA V FV+ E
Sbjct: 750 EEVDNGCVVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEH 809
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ ++ ++
Sbjct: 810 RDMALKRHKHHMGGRYIEVYKASGED 835
>gi|363730887|ref|XP_418338.3| PREDICTED: epithelial splicing regulatory protein 1 [Gallus gallus]
Length = 636
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI KFF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+V E++ FF + + ++ + PD + TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T ++ FF V VL V + R +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQD-------YYNAVASEVNYEGIYDNDFHGSPPPSRAKRY 166
L++ + +G+RY+E+FR + Y + + I PP+ +
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEVQQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A + K T+ RYVE+F + +E
Sbjct: 496 KSADRAFLAAQRCHKKTMKDRYVEVFQCSAEE 527
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI +F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILEFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A QR ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFLAAQRCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>gi|348526958|ref|XP_003450986.1| PREDICTED: epithelial splicing regulatory protein 1 [Oreochromis
niloticus]
Length = 738
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 39/219 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F E ALQR
Sbjct: 251 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRELALQR 310
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ D+ +A ++E A + +DQ+
Sbjct: 311 HKHHMGNRYIEVYKATGDDFLK-IAGGTSHE--------------VAMFLSREDQI---- 351
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR-------------PDGKATGEAYVE 223
I++MRGLPF+ +++ FF ED++ C PDG+ TG+A+V
Sbjct: 352 IVRMRGLPFTATHEQVLAFFSP----EDELKETCPVSGGKDGILFVRYPDGRPTGDAFVL 407
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
F E A+ A+ K K +G RY+ELF ST E ++ +R
Sbjct: 408 FACEEHAQCALRKHKEILGKRYIELFKSTAAEVQQVLNR 446
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 41/226 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----------VLLVN-KNGRFSGEAFVVFAGP 107
+VR+RGLPF T + FF+ D + +L V +GR +G+AFV+FA
Sbjct: 352 IVRMRGLPFTATHEQVLAFFSPEDELKETCPVSGGKDGILFVRYPDGRPTGDAFVLFACE 411
Query: 108 IQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGI---------YDNDFHGSP 158
+ AL++ ++ +G+RY+E+F+ + + + I P
Sbjct: 412 EHAQCALRKHKEILGKRYIELFKSTAAEVQQVLNRYSSTPLISVAPAPLMPVLPTMSLLP 471
Query: 159 PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKA 216
PP + + L++RGLP++ +I+ F ++ I +H+ G+
Sbjct: 472 PPGGVR-----------DCLRLRGLPYTASIEDILTFLGEFTQDIRPHGVHMVLNQQGRP 520
Query: 217 TGEAYVEFVSVEEAKRA---MCKDKMT----IGSRYVELFPSTPDE 255
+G+ +++ S E A +A + K M+ SRYVE+FP + +E
Sbjct: 521 SGDCFIQMTSAERALQASQRLHKHVMSSQRGANSRYVEVFPCSAEE 566
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
PPP +RLRGLP+ + DI F G D+ +++N+ GR SG+ F+
Sbjct: 470 LPPPGGVRDCLRLRGLPYTASIEDILTFL-GEFTQDIRPHGVHMVLNQQGRPSGDCFIQM 528
Query: 105 AGPIQVEFALQRDRQNM-------GRRYVEVFRCKRQD 135
+ A QR +++ RYVEVF C ++
Sbjct: 529 TSAERALQASQRLHKHVMSSQRGANSRYVEVFPCSAEE 566
>gi|383858866|ref|XP_003704920.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Megachile rotundata]
Length = 412
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 39/214 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++ T +I KFF+ I + + +++ GR SGEA+V P +E A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+RDR +MG RY+EVF+ KR + V S N E D+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGFNLENAMDD--------------------- 112
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA
Sbjct: 113 --ACVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERA 170
Query: 234 MCKDKMTIGSR----------YVELFPSTPDEAR 257
+ K K IG R Y+E+F ST E R
Sbjct: 171 LQKHKEKIGHRWGTDXLAGFGYIEIFRSTLSEVR 204
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 109/251 (43%), Gaps = 64/251 (25%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+I+ L + GR +GEA+V F E ALQ+
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 118 RQNMGRR----------YVEVFRCKRQDYYNAVASEV----------------------- 144
++ +G R Y+E+FR + ++ ++
Sbjct: 175 KEKIGHRWGTDXLAGFGYIEIFRSTLSEVRASIGPKMRGPMGGFNQRPAPYDRGARFGGM 234
Query: 145 -----NYEGIYDNDFHGSPP-----PSRAK--------------RYNDKDQMEHTEI--L 178
N G + DF G P SR R N + I +
Sbjct: 235 NRFSNNGRGSRNRDFDGGPWGGNNFDSRGGGMGMRGGMDMKGNFRGNGDAWGGGSGIHSI 294
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
MRGLPF + +I FF+ + + + I G+ +GEA VEF + EEA +AM KDK
Sbjct: 295 HMRGLPFKATEQDIADFFRPIEPV--NVRIILENGGRPSGEADVEFATHEEAMKAMSKDK 352
Query: 239 MTIGSRYVELF 249
+ RY+ELF
Sbjct: 353 SHMSHRYIELF 363
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSV 227
D + ++K+RGLP+S EI++FF D I K +H+ +G+ +GEAYVE +
Sbjct: 7 DHEDEGYVVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMSREGRPSGEAYVEMDTP 66
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E+ ++A +D+ +G RY+E+F + E RS
Sbjct: 67 EDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRS 102
>gi|47225436|emb|CAG11919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 751
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 31/215 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 253 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRDLALQR 312
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ + +DQ+
Sbjct: 313 HKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAMF---------------LSREDQI---- 353
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---------DKIHIACRPDGKATGEAYVEFVSV 227
I++MRGLPF+ +++ FF + ++ D I PDG+ TG+A+V F
Sbjct: 354 IIRMRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLFACE 413
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
E A+ A+ K K +G RY+ELF ST E ++ +R
Sbjct: 414 EHAQCALRKHKEILGRRYIELFKSTAAEVQQVLNR 448
>gi|395512150|ref|XP_003760307.1| PREDICTED: epithelial splicing regulatory protein 1 [Sarcophilus
harrisii]
Length = 550
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 25/205 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 285 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARR 258
+ K K +G RY+ELF ST E ++
Sbjct: 386 LRKHKDLLGKRYIELFRSTAAEVQQ 410
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 VDDNTIVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 279
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 280 LALQRHKHHMGNRYIEVYKAT 300
>gi|449494990|ref|XP_002198687.2| PREDICTED: epithelial splicing regulatory protein 1 [Taeniopygia
guttata]
Length = 766
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+V E++ FF + + ++ + PD + TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T ++ FF V VL V + R +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQD-------YYNAVASEVNYEGIYDNDFHGSPPPSRAKRY 166
L++ + +G+RY+E+FR + Y + + I PP+ +
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEVQQVLNRYSSTPLIPLPRPPILPVLPQQFVPPTTIR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 496 KSADRAFLAAQKCHKKTMKDRYVEVFQCSAEE 527
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
F PP + +RLRGLP+ T DI +F D+ +++N GR SG+AF+
Sbjct: 437 FVPPTTIRDCIRLRGLPYAATIEDILEFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 105 AGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPP 160
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP
Sbjct: 496 KSADRAFLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPP 546
>gi|355757549|gb|EHH61074.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca fascicularis]
Length = 449
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSNEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|351714741|gb|EHB17660.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 396
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 11 VVKLRGLPWSCSTEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEEDVKTAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ + + + H SP + ND
Sbjct: 71 KKDRESMGHRYIEVFKSHKTEMDWVLK-------------HSSPNSTDTA--NDS----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++ GL F K EIVQFF +I+ + I + P+GK TG+A+++F S E A++A+
Sbjct: 111 --FVRLWGLSFGCTKGEIVQFFSGLEIVPNGITLPVDPEGKFTGKAFLQFASQELAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ + R
Sbjct: 169 RKHKEKIGHRYIEVFKSSQEVVR 191
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 104/252 (41%), Gaps = 65/252 (25%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VRL GL F CT +I +FF+GL+IV L V+ G+F+G+AF+ FA E AL++
Sbjct: 112 VRLWGLSFGCTKGEIVQFFSGLEIVPNGITLPVDPEGKFTGKAFLQFASQELAEKALRKH 171
Query: 117 --------------------------------------DRQNMGRRYVEVF------RCK 132
DR +RY+ + R
Sbjct: 172 KEKIGHRYIEVFKSSQEVVRSYSDPPLKFMSVQQPGPYDRPGTAQRYIGIVKQAGLERMP 231
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D+ D RY D + Q +
Sbjct: 232 SGAYSAGYRGYEEYSGLSDDYGFTTDLIGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 291
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK- 238
MRGLP+ +++I FF + ++HI RP+G+ TGEA VEF + EEA AM KDK
Sbjct: 292 MRGLPYKATENDIYNFFSPLNAV--RVHIEIRPNGRVTGEADVEFATNEEAMAAMSKDKD 349
Query: 239 -MTIGSRYVELF 249
I RY+ELF
Sbjct: 350 RTNIQHRYIELF 361
>gi|397478241|ref|XP_003810461.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Pan
paniscus]
Length = 314
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY E+F S+ E R
Sbjct: 170 KKHKERIGHRYTEIFKSSRAEVR 192
>gi|410905415|ref|XP_003966187.1| PREDICTED: epithelial splicing regulatory protein 1-like [Takifugu
rubripes]
Length = 741
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 31/215 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 235 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFINEEHRDLALQR 294
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ + +DQ+
Sbjct: 295 HKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAMF---------------LSREDQI---- 335
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---------EDKIHIACRPDGKATGEAYVEFVSV 227
I++MRGLPF+ +++ FF + + +D I PDG+ TG+A+V F
Sbjct: 336 IVRMRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLFACE 395
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
E A+ A+ K K +G RY+ELF ST E ++ +R
Sbjct: 396 EHAQCALRKHKEILGRRYIELFKSTAAEVQQVLNR 430
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 41/226 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFA---GLDIV--------DVLLVN-KNGRFSGEAFVVFAGP 107
+VR+RGLPF T + FF+ GL +L V +GR +G+AFV+FA
Sbjct: 336 IVRMRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLFACE 395
Query: 108 IQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--PPSRAKR 165
+ AL++ ++ +GRRY+E+F+ + A+EV N + +P P + A
Sbjct: 396 EHAQCALRKHKEILGRRYIELFK--------STAAEVQQ---VLNRYSSAPLIPVAPAPL 444
Query: 166 YNDKDQMEHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKA 216
+ + + L++RGLP++ +I+ F ++ + + +H+ G+
Sbjct: 445 VSVLPAVSLLPPPGGMRDCLRLRGLPYTASIEDILNFLGEFTQDVRQHGVHMVLNQQGRP 504
Query: 217 TGEAYVEFVSVEEAKRAMCKDKMTI-------GSRYVELFPSTPDE 255
+G+ +++ S+E A +A + + SRYVE+FP + +E
Sbjct: 505 SGDCFIQMTSLERALQASQRLHKQVMFSQRGSNSRYVEVFPCSAEE 550
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 52 FPPPPSF-PVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVF 104
PPP +RLRGLP+ + DI F G DV +++N+ GR SG+ F+
Sbjct: 454 LPPPGGMRDCLRLRGLPYTASIEDILNFL-GEFTQDVRQHGVHMVLNQQGRPSGDCFIQM 512
Query: 105 AGPIQVEFALQRDRQNM-------GRRYVEVFRCKRQD 135
+ A QR + + RYVEVF C ++
Sbjct: 513 TSLERALQASQRLHKQVMFSQRGSNSRYVEVFPCSAEE 550
>gi|148237217|ref|NP_001085008.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|47507485|gb|AAH70969.1| MGC78776 protein [Xenopus laevis]
Length = 441
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ +I FF+ I + L + + GR SGEAFV F ++ A+
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEFETEDDLQLAV 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR M RYVEVF+ ++ V + + + SP + ND
Sbjct: 71 KKDRATMAHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 111 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 169 KKHKERIGHRYIEIFKSSRAEVR 191
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 110/239 (46%), Gaps = 52/239 (21%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 118 RQNMGRRYVEVFRCKRQDY---------------------------YNAVA--------- 141
++ +G RY+E+F+ R + YN +
Sbjct: 172 KERIGHRYIEIFKSSRAEVRTNYDPPRKLFGMQRPGPYDRPGAGRGYNNLGRGFDRMRRG 231
Query: 142 -------SEVNYEGIYDNDFHGSPPPSRA--KRYNDKDQMEHT--EILKMRGLPFSVKKS 190
+Y G + F R RY D + T + MRGLP+ ++
Sbjct: 232 AYGGGYSGYEDYNGYNEYAFGADQRFGRVSDNRYGDGSTFQSTTGHCVHMRGLPYRATET 291
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+I FF + ++HI DG+ TGEA VEF S E+A AM KDK + RYVELF
Sbjct: 292 DIYTFFSPLNPV--RVHIEIGADGRVTGEADVEFASHEDAVAAMSKDKANMQHRYVELF 348
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG G F V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 265 YGDGSTFQSTTGH-CVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEF 323
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 324 ASHEDAVAAMSKDKANMQHRYVELF 348
>gi|348516774|ref|XP_003445912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 406
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+ I++ + GR SGEAFV F ++ A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSDCKILNNGSGIHFTYTREGRPSGEAFVEFETEEDLKIAV 66
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A
Sbjct: 67 KKDRETMGHRYVEVFKSN------------NVEMDWVMKHTGPNCPETAG---------- 104
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 105 DGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 165 KKHKERIGHRYIEIFKSSRAEVR 187
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 32/220 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 107 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA------------- 163
++ +G RY+E+F+ R + + G+ + P R
Sbjct: 167 HKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYDRPSGGRGYNMMGRGGSYDRM 226
Query: 164 -----------KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
RY D Q + MRGLP+ +++I FF + ++HI
Sbjct: 227 RRGGYGGGVSDGRYGDGGSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPV--RVHIE 284
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 285 IGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 324
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 240 YGDGGSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 299
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 300 ATHEDAVAAMSKDKANMQHRYVELF 324
>gi|328716236|ref|XP_001946855.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 858
Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF GL+I L ++ +GR +GEA V F + A++R
Sbjct: 267 VVRARGLPWQSSDQDIAKFFRGLNIAKGGVALCLSAHGRRNGEAVVRFVNQEHRDMAMKR 326
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV++ +D+ N S A+ + K
Sbjct: 327 HKHHIGSRYIEVYKANGEDFINVAGGN----------------SSEAQTFLTKGAQV--- 367
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII------EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF++ + ED + +PDG+ATG+A+V F ++A
Sbjct: 368 IVRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDA 427
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IG+RY+ELF ST E ++ +R+
Sbjct: 428 PKALSKHRDLIGTRYIELFRSTTAEVQQVLNRA 460
Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++CT D+ FF ++D VL V K +GR +G+AFV+FA
Sbjct: 368 IVRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDA 427
Query: 111 EFALQRDRQNMGRRYVEVFRCK----RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRY 166
AL + R +G RY+E+FR +Q A+ V N +P + A
Sbjct: 428 PKALSKHRDLIGTRYIELFRSTTAEVQQVLNRAMDPSVRSTASDSNGNITTPVTTTAGVN 487
Query: 167 NDKDQM----------EHT-------EILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIH 207
N + +H + +++RGLP+ I++F ++ I+ +H
Sbjct: 488 NSPTALLGHVPLLPLPQHVITSGTRKDCIRLRGLPYEANVEHILEFLGEHSKNIVFQGVH 547
Query: 208 IACRPDGKATGEAYVEFV---SVEEAKRAMCKDKMTIG--SRYVELFPSTPDE 255
+ G A+GEA+++ S +A A + M+ G RY+E+F + ++
Sbjct: 548 MVYNSVGHASGEAFIQMNNEGSAAQAAMAKHHNYMSFGKKQRYIEVFQCSGED 600
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++++ +++ RGLP+ +I +FF+ I + + + G+ GEA V FV+ E
Sbjct: 260 EEVDNNCVVRARGLPWQSSDQDIAKFFRGLNIAKGGVALCLSAHGRRNGEAVVRFVNQEH 319
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
AM + K IGSRY+E++ + ++
Sbjct: 320 RDMAMKRHKHHIGSRYIEVYKANGED 345
Score = 37.7 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 61 VRLRGLPFNCTDIDICKF---------FAGLDIVDVLLVNKNGRFSGEAFVVF---AGPI 108
+RLRGLP+ I +F F G+ +V N G SGEAF+
Sbjct: 516 IRLRGLPYEANVEHILEFLGEHSKNIVFQGVHMV----YNSVGHASGEAFIQMNNEGSAA 571
Query: 109 QVEFALQRDRQNMGR--RYVEVFRCKRQDYY 137
Q A + + G+ RY+EVF+C +D +
Sbjct: 572 QAAMAKHHNYMSFGKKQRYIEVFQCSGEDMH 602
>gi|60098931|emb|CAH65296.1| hypothetical protein RCJMB04_15n19 [Gallus gallus]
Length = 499
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-----VNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I++ L + GR SGEAF V+ AL
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYV VF+ N E + G P A ND
Sbjct: 102 KKDRETMGHRYVVVFKSN------------NVEMDWVLKHTGPNSPDTA---NDG----- 141
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 142 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 199
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 200 KKHKERIGHRYIEIFKSSRAEVR 222
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 305 RYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 362
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 363 VEFATHEDAVAAMSKDKANMQHRYVELF 390
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 40 ASGFQPYGYGGGFPPPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRF 96
++G + YG G S V +RGLP+ T+ DI FF+ L+ V V + + +GR
Sbjct: 298 SAGMSDHRYGDGTSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRV 357
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+GEA V FA A+ +D+ NM RYVE+F
Sbjct: 358 TGEADVEFATHEDAVAAMSKDKANMQHRYVELF 390
>gi|432879057|ref|XP_004073431.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 413
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+G I++ + GR SGEAFV ++ A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVAV 66
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A
Sbjct: 67 KKDRETMGHRYVEVFKSN------------NVEMDWVMKHTGPNCPETAG---------- 104
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 105 DGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S E R
Sbjct: 165 KKHKERIGHRYIEIFKSCRAEVR 187
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 38/226 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 107 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA------------- 163
++ +G RY+E+F+ R + + G+ + P R
Sbjct: 167 HKERIGHRYIEIFKSCRAEVRTHYEPQRKPMGMQRPSPYDRPSGGRGYNMMGRGASYDRM 226
Query: 164 -----------------KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE 203
RY D Q + MRGLP+ +++I FF +
Sbjct: 227 RRGGYGGGGGGGGGVSDGRYGDSGSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPV- 285
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
++HI PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 286 -RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 330
>gi|395736587|ref|XP_003780726.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Pongo abelii]
Length = 430
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 13 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 72
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVE F+ ++ V + + + SP + ND
Sbjct: 73 KKDRETMGHRYVEGFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 112
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 113 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 170
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 171 KKHKERIGHRYIEIFKSSRAEVR 193
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 276 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 333
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 334 VEFATHEDAVAAMSKDKANMQHRYVELF 361
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 277 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 336
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 337 ATHEDAVAAMSKDKANMQHRYVELF 361
>gi|326917907|ref|XP_003205236.1| PREDICTED: epithelial splicing regulatory protein 1-like [Meleagris
gallopavo]
Length = 671
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI KFF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 285 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+V E++ FF + + ++ + PD + TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKDLLGRRYIELFRSTAAEVQQVLNR 414
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T ++ FF V VL V + R +G+AFV+FA + A
Sbjct: 326 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFRCKRQD-------YYNAVASEVNYEGIYDNDFHGSPPPSRAKRY 166
L++ + +GRRY+E+FR + Y + + I PP+ +
Sbjct: 386 LKKHKDLLGRRYIELFRSTAAEVQQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVR-- 443
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 444 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 494
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RY+E+F + +E
Sbjct: 495 KSADRAFLAAQKCHKKTMKDRYIEVFQCSAEE 526
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 438 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 496
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RY+EVF+C ++
Sbjct: 497 ADRAFLAAQKCHKKTMKDRYIEVFQCSAEE 526
>gi|383856881|ref|XP_003703935.1| PREDICTED: uncharacterized protein LOC100878893 [Megachile
rotundata]
Length = 1212
Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats.
Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 754 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKR 813
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ V G + H SR +
Sbjct: 814 HKHHMGGRYIEVYKASGEDF-------VGVAGGTSGEAHAFL--SRGAQV---------- 854
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF K ++ ED + +PDG+ATG+A+V F E+A
Sbjct: 855 IVRMRGLPYDCVAKQVLDFFLTGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 914
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +R+
Sbjct: 915 VKALSKHRDCIGSRYIELFRSTIAEVQQVLNRA 947
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++++ +++ RGLP+ +I +FF+ + + + + P G+ GEA V FV+ E
Sbjct: 747 EEVDNGCVVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEH 806
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ ++ ++
Sbjct: 807 RDMALKRHKHHMGGRYIEVYKASGED 832
>gi|324504848|gb|ADY42090.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 282
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 21/204 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD--IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQR 116
VV+ RGLP++CT+ +I FF D IV + L N++ R SGEAFV F E+AL R
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
D+Q+MG+RY+EVF A AS+V Y + G P R R T
Sbjct: 116 DKQHMGKRYIEVF--------PASASDVEY------NITG---PERRLRMGISLPGRDTS 158
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAMC 235
I+++RGLP+ EI +FF I + I + GKATG+A+V F + A RA+
Sbjct: 159 IVRLRGLPYGCTNDEITRFFHPIPIAANGIVLPYDHRSGKATGDAFVAFYEPDSAARALE 218
Query: 236 KDKMTIGSRYVELFPSTPDEARRA 259
+++ I RY+E+FPS+ E RA
Sbjct: 219 RNRNNIQHRYIEVFPSSYGEMLRA 242
>gi|321459051|gb|EFX70109.1| hypothetical protein DAPPUDRAFT_202511 [Daphnia pulex]
Length = 514
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 40/223 (17%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFA 113
S VVR RGLP+ +D DI +FF GL++ L ++ GR +GEA V F P + A
Sbjct: 172 SNTVVRARGLPWQSSDQDIARFFRGLNVARGGVALCLSPQGRRNGEALVRFISPEHRDMA 231
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + ++G+RY+EV++ +D+ + VA +N E +F SR+ +
Sbjct: 232 LKRHKHHIGQRYIEVYKATGEDFID-VAGGINNEA---QNF-----LSRSGQV------- 275
Query: 174 HTEILKMRGLPFSVKKSEIVQFFK-------------DYKIIEDKIHIACRPDGKATGEA 220
I++MRGLP+ ++V+FF+ D ++ K H DG+ATG+A
Sbjct: 276 ---IVRMRGLPYDCTAKQVVEFFESGGEDVGSTVLDGDSGVLFVKKH-----DGRATGDA 327
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+V F + EE +A+ K + IGSRY+ELF ST E ++ +RS
Sbjct: 328 FVMFATEEEGSKALAKHRDIIGSRYIELFRSTTAEVQQVLNRS 370
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFF------AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPI 108
+VR+RGLP++CT + +FF G ++D VL V K +GR +G+AFV+FA
Sbjct: 276 IVRMRGLPYDCTAKQVVEFFESGGEDVGSTVLDGDSGVLFVKKHDGRATGDAFVMFATEE 335
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--PPSRAKRY 166
+ AL + R +G RY+E+FR + + ++ Y+ P P
Sbjct: 336 EGSKALAKHRDIIGSRYIELFRSTTAEVQQVLNRSMDPR-TYETQAPLIPQLPQMPLLPQ 394
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEF 224
N + +++RGLP+ + I++F ++ I+ +H+ G+ +GEA+++
Sbjct: 395 NMITSGTRKDCIRLRGLPYEAQVEHILEFLGEHAKSIVYQGVHMVYNAQGQPSGEAFIQM 454
Query: 225 VSVEEAKRAMCKDK---MTIG--SRYVELF 249
S + + +A + M G RY+E+F
Sbjct: 455 DSEQSSFQAAQQRHHRYMVFGKKQRYIEVF 484
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE-GIYDNDFHGSPPPSRA 163
AG +Q + A +R+ Q+MGR + + + + N + E GI D
Sbjct: 120 AGVVQ-QNATRREAQDMGRILQRLLK-EGHKFENPETIHLRLEPGICSKD---------- 167
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
++++ +++ RGLP+ +I +FF+ + + + P G+ GEA V
Sbjct: 168 ------EEVDSNTVVRARGLPWQSSDQDIARFFRGLNVARGGVALCLSPQGRRNGEALVR 221
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFPST 252
F+S E A+ + K IG RY+E++ +T
Sbjct: 222 FISPEHRDMALKRHKHHIGQRYIEVYKAT 250
>gi|126328016|ref|XP_001371380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 468
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ DI +FF+ I + + + GR SGEAFV +V AL
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKIQNGAAGIHFIYTREGRPSGEAFVELESEDEVTLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ + + + H +P N D
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNIEMDWVLK---HTAP--------NSLDTASD 110
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G+ +GEA+V+F S E A++A+
Sbjct: 111 G-FVRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ EA+
Sbjct: 170 KKHKERIGHRYIEIFKSSQAEAQ 192
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 113/252 (44%), Gaps = 58/252 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C +I +FF+GL+I+ L V+ GR SGEAFV FA E AL++
Sbjct: 113 VRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKALKKH 172
Query: 118 RQNMGRRYVEVFRCKR---QDYYN------------------------------------ 138
++ +G RY+E+F+ + Q +Y+
Sbjct: 173 KERIGHRYIEIFKSSQAEAQTHYDPPRKLMAKQRPGPYDRPQAGRGYSTLGRGVGFAGMR 232
Query: 139 AVASEVNYEGIYDNDFHGS--------------PPPSRAKRYNDKDQMEHTEILKMRGLP 184
A E Y G D +++ S ++ Q + MRGLP
Sbjct: 233 CGAYEAGYRGYDDYNWYNDDYCFGRYLNYYLAMSGHSYGDSWSTFHQSPAGHYVHMRGLP 292
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
+ +++I FF K + I I DG+ TGEA VEF + E+A AM KDK + R
Sbjct: 293 YKATENDICDFFSPLKPVGAYIEIGS--DGRVTGEADVEFATHEDAVAAMSKDKANMQHR 350
Query: 245 YVELFPSTPDEA 256
Y+ELF ++ EA
Sbjct: 351 YIELFLNSTTEA 362
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F P+ V +RGLP+ T+ DIC FF+ L V + + +GR +GEA V FA
Sbjct: 277 FHQSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIGSDGRVTGEADVEFATHEDA 336
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +D+ NM RY+E+F
Sbjct: 337 VAAMSKDKANMQHRYIELF 355
>gi|298713992|emb|CBJ27224.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 525
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 114/240 (47%), Gaps = 35/240 (14%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
FP VRLRGL + + DI FF GL ++D++L A +F + ALQR
Sbjct: 285 FPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVGAITLFGTLMDYHGALQR 344
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV-------ASEV-----------------------NY 146
+ RY+EV R DYY+AV A+EV N
Sbjct: 345 YSLQIKGRYIEVAPAIRADYYSAVIKRSTGGAAEVAPTTPAGVGGGGEQDGDPAVQGQNG 404
Query: 147 EGIYDNDFH---GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE 203
++ +D GS +++MRGLP+ KSE++ FFK I E
Sbjct: 405 TVVHQSDTALAMGSAKAPGPAAAAGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPE 464
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE-ARRAESR 262
+ + R DG+ TGEAYV F + E+AK + KD+ IGSRY+ELF S+P+E AR A S+
Sbjct: 465 EGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEMARYANSK 524
>gi|198421641|ref|XP_002120551.1| PREDICTED: similar to RNA-binding protein 35B (RNA-binding motif
protein 35B) [Ciona intestinalis]
Length = 772
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV---DVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L++N GR +GEA V F Q + AL R
Sbjct: 254 VVRARGLPWQASDHDVARFFKGLNIPRGGAALVLNPQGRRNGEALVRFENEQQRDLALLR 313
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +M RY+EV+R D + VA+ + E I+ + K E
Sbjct: 314 HKHHMASRYIEVYRAS-GDEFLKVAAGSSCEAIH---------------FLSK---EGEA 354
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +IV+FF D + E+ + + DG+ TG+A+V F S + A A
Sbjct: 355 IVRMRGLPFTAGPRDIVEFFGDEIPVAHGEEGVLLVKFADGRPTGDAFVLFTSEKFAVAA 414
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K+T+G RYVE+F ST E ++ SR
Sbjct: 415 LNKHKLTLGKRYVEIFKSTAAEVQQVLSR 443
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 20/211 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-----DVLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF DI +FF V VLLV +GR +G+AFV+F A
Sbjct: 355 IVRMRGLPFTAGPRDIVEFFGDEIPVAHGEEGVLLVKFADGRPTGDAFVLFTSEKFAVAA 414
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF-HGSPPPSRAKRYNDKDQM 172
L + + +G+RYVE+F+ + ++ + I H PPP +
Sbjct: 415 LNKHKLTLGKRYVEIFKSTAAEVQQVLSRHMTSPIIPTMPSPHILPPPQQPVPAGAIRN- 473
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RG+P+S +I F + I+ IH+ G+ +G+A+++ SVE+
Sbjct: 474 ----CIRLRGMPYSATVEDITSFLGELANSILPHGIHMVLNQQGRPSGDAFIQLSSVEKC 529
Query: 231 KRAMCK------DKMTIGSRYVELFPSTPDE 255
+A K +G RYVE+F + DE
Sbjct: 530 SQAALDVSKGGCHKRHMGERYVEVFQCSGDE 560
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
++M+G+P++ ++I+ FFK Y + + I + + TGEA V F S+EE+ RA+ +
Sbjct: 698 VRMQGMPYNAGVADIMAFFKGYNLNSESIKLIYNDKLRPTGEALVTFPSLEESHRAVVEN 757
Query: 237 DKMTIGSRYVELF 249
++ +G+RY+EL
Sbjct: 758 NRKLMGNRYIELL 770
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFA-LQR 116
VR++G+P+N DI FF G ++ L+ N R +GEA V F + A ++
Sbjct: 698 VRMQGMPYNAGVADIMAFFKGYNLNSESIKLIYNDKLRPTGEALVTFPSLEESHRAVVEN 757
Query: 117 DRQNMGRRYVEVF 129
+R+ MG RY+E+
Sbjct: 758 NRKLMGNRYIELL 770
>gi|147907062|ref|NP_001079993.1| RNA binding motif protein 12 [Xenopus laevis]
gi|37589430|gb|AAH59291.1| Rbm12-prov protein [Xenopus laevis]
Length = 877
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 53 PPPPSF--PVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQ 109
PPP + P V L GLP ++ DI + F GL I V+L + GR +G A V P
Sbjct: 296 PPPLNHDDPYVCLHGLPLPVSEADIKELFHGLRIDGIVILTDPMGRHNGSALVKLITPHD 355
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------- 159
AL+R+R MG+R++EV + + + + + HG PP
Sbjct: 356 TFEALKRNRMLMGQRFIEVSPATERQWIVNGGHMLKQQNV---GHHGPPPLMQQLITRSK 412
Query: 160 -PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
P+ R + EH + ++GLP+ + ++ FFK I+ED I+IA +GKATG
Sbjct: 413 SPNPQSRPRSRSPHEHGFCVYLKGLPYEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATG 472
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
E ++EF + E+ K A+C+ K +G+R+V++ P T
Sbjct: 473 EGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPIT 506
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 14/195 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP+ + + FF L+IV+ + NG+ +GE F+ F + AL R
Sbjct: 432 VYLKGLPYEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+V+V ++ + Y+ H P D + +H
Sbjct: 492 KQYMGNRFVQVHPITKKAMLEKIDMIHKKMQSYNYGEHKDAP-------LDAEFDKHGPR 544
Query: 178 L--KMRGLPFSVKKSEIVQFF--KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
L + LP+S+ + +I FF + + I E+ + + +G+ G+A V+F S ++A+++
Sbjct: 545 LWGHLSNLPYSIMRKDISHFFISEGFAIDENFVQLLTDNNGQCIGQALVQFRSEDDARKS 604
Query: 234 MCKDKMTIGSRYVEL 248
+ + R V L
Sbjct: 605 ERLHRKKLNGRDVFL 619
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 802 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 861
Query: 237 -DKMTIGSRYVEL 248
++ IGSR V+L
Sbjct: 862 LNERPIGSRKVKL 874
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQMEHTEI 177
+ V + + + N + + D PP PSRA M T +
Sbjct: 63 TIKGSKVSLLLSSKTEMQNMIELSRRRFETANADL---PPANPSRAV-LTPTPGMGSTTV 118
Query: 178 LKMRGLPFSV 187
L LP +V
Sbjct: 119 LSRVNLPTTV 128
>gi|301606650|ref|XP_002932936.1| PREDICTED: RNA-binding protein 12 [Xenopus (Silurana) tropicalis]
Length = 880
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 53 PPPPSF--PVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQ 109
PPP + P V L GLP ++ DI FF GL I V+L + GR +G A V P
Sbjct: 299 PPPLNHDDPYVCLHGLPVPVSEADIKDFFHGLRIDGIVVLKDPMGRHNGSALVKLITPHD 358
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------- 159
AL+R+R +G+R++EV + + + + + + HG PP
Sbjct: 359 TFEALKRNRMLLGQRFIEVSPATERQWMVSAGHILKPQNV---GHHGPPPLMQQLITRSK 415
Query: 160 -PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
PS R + EH + ++GLP+ + ++ FFK I+ED I+IA +GKATG
Sbjct: 416 SPSTQSRPRSRSPHEHGFCVYLKGLPYEAENKHVIDFFKKLDIVEDSIYIAYGSNGKATG 475
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
E ++EF + E+ K A+C+ K +G+R+V++ P T
Sbjct: 476 EGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPIT 509
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP+ + + FF LDIV+ + NG+ +GE F+ F + AL R
Sbjct: 435 VYLKGLPYEAENKHVIDFFKKLDIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRH 494
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+V+V ++ + Y+ H P D + +H
Sbjct: 495 KQYMGNRFVQVHPITKKAMLEKIDMIRKKMQSYNYSEHKDAP-------LDAEFEKHGPR 547
Query: 178 L--KMRGLPFSVKKSEIVQFF--KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
L + LP+S+ + +I FF + + I E+ + + +G+ G+A V+F S ++A+++
Sbjct: 548 LWGHLSNLPYSIMRKDISHFFISEGFAIDENFVQLLVDNNGQCIGQALVQFRSEDDARKS 607
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 805 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 864
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 865 LNDRPIGSRKVKL 877
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKR--YNDKDQMEHTEI 177
+ V + + + N + + D PP+ A R M T +
Sbjct: 63 TIKGSKVSLLLSSKTEMQNMIELSRRRFETANVDL----PPANAGRTVLTPAAGMGATTV 118
Query: 178 LKMRGLPFSV 187
L LP +V
Sbjct: 119 LSRVNLPTTV 128
>gi|346465413|gb|AEO32551.1| hypothetical protein [Amblyomma maculatum]
Length = 434
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 31/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFF--------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
V+R+RGLP++ T +I FF G++ V + L ++ GR SGEA++ VE
Sbjct: 34 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTL-SREGRPSGEAYIELESEQDVE 92
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
LQR +++G RY+EVF+ KR + + V G + D ND
Sbjct: 93 IGLQRHNEHIGHRYIEVFKSKRSE----MDWVVKRSGAHQQD-----------SLNDG-- 135
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLPF K EI QFF +I+ + I + G++TGEA+V+F + + A+
Sbjct: 136 -----CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAE 190
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA 259
+AM K K IG RY+E+F S+ E R A
Sbjct: 191 KAMGKHKEKIGHRYIEIFKSSLQEIRSA 218
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 108/232 (46%), Gaps = 45/232 (19%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L + GR +GEAFV FA E A+ +
Sbjct: 137 VRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKH 196
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEV--------------------------------- 144
++ +G RY+E+F+ Q+ +AV V
Sbjct: 197 KEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGTGRPGPYDRVERFGGGPSRYGMGRG 256
Query: 145 --NYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII 202
N+ G + D +G S + + MRGLPF + +I +FF+ +
Sbjct: 257 GRNFRGFVEEDGYGDFGGSVGGSHFSAT----GHFVHMRGLPFRATERDIFEFFQPMNPV 312
Query: 203 EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
+H G+ +GE VEF + EEA +AM KDK + RY+ELF STP
Sbjct: 313 --NVHFIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNSTP 362
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+L++RGLP+S K EI+ FF K + +H+ +G+ +GEAY+E S ++ +
Sbjct: 34 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLSREGRPSGEAYIELESEQDVEI 93
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ + IG RY+E+F S E RS
Sbjct: 94 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKRS 124
>gi|346473523|gb|AEO36606.1| hypothetical protein [Amblyomma maculatum]
Length = 412
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 31/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFA--------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
V+R+RGLP++ T +I FF G++ V + L ++ GR SGEA++ VE
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECNIKGGINGVHMTL-SREGRPSGEAYIELESEQDVE 69
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
LQR +++G RY+EVF+ KR + + V G + D ND
Sbjct: 70 VGLQRHNEHIGHRYIEVFKSKRSE----MDWVVKRSGAHQQD-----------SLNDG-- 112
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLPF K EI QFF +I+ + I + G++TGEA+V+F + + A+
Sbjct: 113 -----CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAE 167
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA 259
+AM K K IG RY+E+F S+ E R A
Sbjct: 168 KAMGKHKEKIGHRYIEIFKSSLQEVRSA 195
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 37/228 (16%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L + GR +GEAFV FA E A+ +
Sbjct: 114 VRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKH 173
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEV---------NYEGIYD--NDFHGSPPPSRAKR- 165
++ +G RY+E+F+ Q+ +A+ V G YD + F G P R
Sbjct: 174 KEKIGHRYIEIFKSSLQEVRSAIGMGVPKMMRPMGGARPGPYDRADRFGGGPSRYGMGRG 233
Query: 166 ------YNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
+ ++D + MRGLPF + +I +FF+ + +
Sbjct: 234 GRNFRGFVEEDGYGGFGGPGGGAHFSATGHFVHMRGLPFRATERDIFEFFQPMNPV--NV 291
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
H+ G+ +GE VEF + EEA +AM KDK + RY+ELF STP
Sbjct: 292 HLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNSTP 339
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFK----DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+L++RGLP+S K EI+ FF + K + +H+ +G+ +GEAY+E S ++ +
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECNIKGGINGVHMTLSREGRPSGEAYIELESEQDVEV 70
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ + IG RY+E+F S E RS
Sbjct: 71 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKRS 101
>gi|123704039|ref|NP_001074045.1| epithelial splicing regulatory protein 1 [Danio rerio]
gi|143360736|sp|A1L1G1.1|ESRP1_DANRE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|120537378|gb|AAI29045.1| RNA binding motif protein 35A [Danio rerio]
Length = 714
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A + ++Q+
Sbjct: 286 HKHHMGGRYIEVYKATGEDFLKIAGGTSN---------------EVASFLSRENQI---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++QFF + D I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ ++
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-GLDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T + +FF+ + D +L V +GR +G+AFV+F+ + A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ + +G+RY+E+F+ + Q N +S PP+ +
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTFVPQTAAVP 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + +++RGLP+ +I+ F +Y I +H+ G+ +GEA+++ S E
Sbjct: 447 GVR--DCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSAE 504
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A + K ++ RYVE+F + E
Sbjct: 505 RAFLAAQRCHKRSMKERYVEVFACSAQE 532
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++ +++ RGLP+ +I +FF+ I + + G+ GEA V F S E
Sbjct: 219 ERVDDNTVIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEH 278
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
A+ + K +G RY+E++ +T
Sbjct: 279 RDLALQRHKHHMGGRYIEVYKAT 301
>gi|159155917|gb|AAI54577.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 35/220 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FFAGL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 117 DRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYEGI 149
++ +G RY+E+F+ R + YN++ V++E +
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPSPYDRPGGGRGYNSMGRGVSFERM 227
Query: 150 YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
+ G + Q + MRGLP+ +++I FF + ++H+
Sbjct: 228 RRGGYGGDGRYGDS---GSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPV--RVHLE 282
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 283 IGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 322
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+ I + GR SGEAFV F ++ A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKSAV 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + P
Sbjct: 68 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNCPDTGGDG---------- 107
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 108 --LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKAL 165
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 166 KKHKERIGHRYIEIFKSSRAEVR 188
>gi|327269521|ref|XP_003219542.1| PREDICTED: epithelial splicing regulatory protein 1-like [Anolis
carolinensis]
Length = 648
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D D+ +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 219 IIRARGLPWQSSDQDVARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 278
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 279 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 319
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+V E++ FF + + ++ I PD + TG+A+V F E A+ A
Sbjct: 320 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACEEYAQNA 379
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 380 LKKHKDLLGKRYIELFRSTAAEVQQVLNR 408
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 320 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACEEYAQNA 379
Query: 114 LQRDRQNMGRRYVEVFRCKRQD-------YYNAVASEVNYEGIYDNDFHGSPPPSRAKRY 166
L++ + +G+RY+E+FR + Y + + I PP+ +
Sbjct: 380 LKKHKDLLGKRYIELFRSTAAEVQQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVR-- 437
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 438 ---------DCIRLRGLPYAATIEDILGFLGEFSADIRTHGVHMVLNHQGRPSGDAFIQM 488
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S E A A K K T+ RYVE+F + +E
Sbjct: 489 KSSERAFMAAQKCHKKTMKDRYVEVFQCSAEE 520
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ ++ +FFK I + + G+ GEA V FVS E
Sbjct: 214 IDDNTIIRARGLPWQSSDQDVARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 273
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 274 LALQRHKHHMGNRYIEVYKATGED 297
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 432 PPTNVRDCIRLRGLPYAATIEDILGFLGEFS-ADIRTHGVHMVLNHQGRPSGDAFIQMKS 490
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 491 SERAFMAAQKCHKKTMKDRYVEVFQCSAEE 520
>gi|45387779|ref|NP_991247.1| heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
gi|41107558|gb|AAH65439.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 35/220 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +FFAGL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 117 DRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYEGI 149
++ +G RY+E+F+ R + YN++ V++E +
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPSPYDRPGGGRGYNSMGRGVSFERM 227
Query: 150 YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
+ G + Q + MRGLP+ +++I FF + ++H+
Sbjct: 228 RRGGYGGDGRYGDS---GSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPV--RVHLE 282
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 283 IGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 322
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+ I + GR SGEAFV F ++ A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + P +
Sbjct: 68 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNCP------------ETGG 105
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 106 DGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKAL 165
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 166 KKHKERIGHRYIEIFKSSRAEVR 188
>gi|324975474|gb|ADY62662.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 180
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 109/199 (54%), Gaps = 28/199 (14%)
Query: 62 RLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
R RGLP+ +D DI KFF GL+IV L ++ GR +GEA V F + AL+R +
Sbjct: 1 RARGLPWQSSDQDIAKFFRGLNIVRGGVALCLSPQGRRNGEALVRFVNQEHRDMALKRHK 60
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
++G+RY+EV+R +D+ N VA N+E SR + I+
Sbjct: 61 HHIGQRYIEVYRATGEDFVN-VAGGSNHEA--------QTFLSRGGQV----------IV 101
Query: 179 KMRGLPFSVKKSEIVQFFKDYKII------EDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+MRGLP+ ++++FF I+ E+ + +PDG+ATG+A+V F + E A +
Sbjct: 102 RMRGLPYDCTPQQVIEFFSTGDIVCQVMDSEEGVLFVRKPDGRATGDAFVLFETEEMAGK 161
Query: 233 AMCKDKMTIGSRYVELFPS 251
A+ K + IGSRY+ELF S
Sbjct: 162 ALQKHRQVIGSRYIELFRS 180
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV--------DVLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++CT + +FF+ DIV VL V K +GR +G+AFV+F
Sbjct: 100 IVRMRGLPYDCTPQQVIEFFSTGDIVCQVMDSEEGVLFVRKPDGRATGDAFVLFETEEMA 159
Query: 111 EFALQRDRQNMGRRYVEVFR 130
ALQ+ RQ +G RY+E+FR
Sbjct: 160 GKALQKHRQVIGSRYIELFR 179
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
+ RGLP+ +I +FF+ I+ + + P G+ GEA V FV+ E A+ + K
Sbjct: 1 RARGLPWQSSDQDIAKFFRGLNIVRGGVALCLSPQGRRNGEALVRFVNQEHRDMALKRHK 60
Query: 239 MTIGSRYVELFPSTPDE 255
IG RY+E++ +T ++
Sbjct: 61 HHIGQRYIEVYRATGED 77
>gi|427789699|gb|JAA60301.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 411
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 31/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFF--------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
V+R+RGLP++ T +I FF G++ V + L ++ GR SGEA++ +E
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTL-SREGRPSGEAYIELESEQDME 69
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
LQR +++G RY+EVF+ KR + + V G + D ND
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRSE----MDWVVKRSGAHQQD-----------SLNDG-- 112
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLPF K EI QFF +I+ + I + G++TGEA+V+F + + A+
Sbjct: 113 -----CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAE 167
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA 259
+AM K K IG RY+E+F S+ E R A
Sbjct: 168 KAMGKHKEKIGHRYIEIFKSSLQEIRSA 195
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 111/236 (47%), Gaps = 53/236 (22%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L + GR +GEAFV FA E A+ +
Sbjct: 114 VRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKH 173
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEV--------------------------------- 144
++ +G RY+E+F+ Q+ +AV V
Sbjct: 174 KEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGSARPGPYDRAERFGGGPSRYGMGRG 233
Query: 145 --NYEGIYDN----DFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
N+ G + DF GS R++ H MRGLPF + +I +FF+
Sbjct: 234 GRNFRGFVEEDGYADFGGS---GGGARFSATGHFVH-----MRGLPFRATERDIFEFFQP 285
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
I +H+ G+ +GE VEF + EEA +AM KDK + RY+ELF STP
Sbjct: 286 MNPI--NVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNSTP 339
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+L++RGLP+S K EI+ FF K + +H+ +G+ +GEAY+E S ++ +
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLSREGRPSGEAYIELESEQDMEI 70
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ + IG RY+E+F S E RS
Sbjct: 71 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKRS 101
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 47 GYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFA 105
G GGG + V +RGLPF T+ DI +FF ++ ++V L+ +GR SGE V FA
Sbjct: 251 GSGGGARFSATGHFVHMRGLPFRATERDIFEFFQPMNPINVHLIYEDSGRPSGECDVEFA 310
Query: 106 GPIQVEFALQRDRQNMGRRYVEVF 129
+ A+ +D+ +M RY+E+F
Sbjct: 311 THEEAVKAMSKDKAHMQHRYIELF 334
>gi|307176277|gb|EFN65908.1| Heterogeneous nuclear ribonucleoprotein H2 [Camponotus floridanus]
Length = 417
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 41/216 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++ T +I KFF I + + +++ GR SGEA+V P +E A
Sbjct: 14 VVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+RDR +MG RY+EVF+ KR + V S +N E D+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNLENAMDDG-------------------- 113
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA
Sbjct: 114 ---CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERA 170
Query: 234 MCKDKMTIGSR------------YVELFPSTPDEAR 257
+ K K IG R Y+E+F S+ E R
Sbjct: 171 LQKHKEKIGHRWGTETLYIAGFGYIEIFRSSLSEVR 206
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 69/256 (26%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+I+ L + GR +GEA+V F E ALQ+
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 118 RQNMGRR------------YVEVFRCKRQDYYNAVASEV--------------------- 144
++ +G R Y+E+FR + ++ ++
Sbjct: 175 KEKIGHRWGTETLYIAGFGYIEIFRSSLSEVRASIGPKMRGGPMGGFNQRPAPYTRGDRF 234
Query: 145 --------NYEGIYDNDFHGSPPPSRAK---------------------RYNDKDQMEHT 175
N G + DF P S R N+ ++
Sbjct: 235 GGMNRFSNNGRGSRNRDFDSGPWGSGNNYGSRGGNMGMRGGMDMKGNNYRGNNDSWGGNS 294
Query: 176 EI--LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ + MRGLPF + +I FF+ + + + I G+ +GEA VEF + EEA +A
Sbjct: 295 GVHSIHMRGLPFKATEQDIADFFRPIEPV--NVRIILENGGRPSGEADVEFATHEEAVKA 352
Query: 234 MCKDKMTIGSRYVELF 249
MCKDK + RY+ELF
Sbjct: 353 MCKDKSHMSHRYIELF 368
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSV 227
D + ++KMRGLP+S EI++FF D I K +H+ +G+ +GEAYVE +
Sbjct: 7 DHEDEGYVVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMSREGRPSGEAYVEMDTP 66
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E+ ++A +D+ +G RY+E+F + E RS
Sbjct: 67 EDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRS 102
>gi|91094511|ref|XP_971832.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
(hnRNP H) [Tribolium castaneum]
gi|270000730|gb|EEZ97177.1| hypothetical protein TcasGA2_TC004364 [Tribolium castaneum]
Length = 379
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 28/201 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+V+LRGLP++ T DI KFF + + + ++ GR SGEAFV F + AL
Sbjct: 11 IVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESEDDLNSAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+++G RY+EVF+ + + + G+ D+
Sbjct: 71 RKDREHIGSRYIEVFKVNKAEMDWVIKRSGPTYGVNDDG--------------------- 109
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EI QFF +I+ + I + G+++GEAYV+FV+ E A++A+
Sbjct: 110 --CVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDYSGRSSGEAYVQFVNKEVAEKAL 167
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
K + IG RY+E+F S+ E
Sbjct: 168 LKHREKIGHRYIEIFRSSLSE 188
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 115/254 (45%), Gaps = 64/254 (25%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF GL+IV LL + +GR SGEA+V F E AL +
Sbjct: 111 VRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDYSGRSSGEAYVQFVNKEVAEKALLKH 170
Query: 118 RQNMGRRYVEVFRCKRQD--------------------YYNAVAS--------------- 142
R+ +G RY+E+FR + YN+ S
Sbjct: 171 REKIGHRYIEIFRSSLSEVNSVLGYNNRRGGGSSNSGGLYNSRPSPYDRGDRFGSSSSNS 230
Query: 143 ------EVNYEGI---YDN------------DFHGSPPPSRAKRY---NDKDQMEHTEIL 178
N++G+ Y+N D G P + N++ +
Sbjct: 231 RFQSRSSRNFKGVNSDYNNYEKSSSTWSNGSDSRGGRSPYEIDSWSETNNQTGDRTMHCV 290
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
MRGLPF ++I FFK I+ + + +G+A+GEA VEF S E+A RAM KDK
Sbjct: 291 HMRGLPFKATAADITDFFK--PIVPTNVKLLQDHNGRASGEADVEFASHEDAMRAMSKDK 348
Query: 239 MTIGSRYVELFPST 252
+ RY+ELF ++
Sbjct: 349 GHMQHRYIELFLNS 362
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 173 EHTE--ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVE 228
EH E I+K+RGLP+S +I++FFK+ K+ K IH+ +G+ +GEA+VEF S +
Sbjct: 5 EHEEGYIVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESED 64
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ A+ KD+ IGSRY+E+F E RS
Sbjct: 65 DLNSALRKDREHIGSRYIEVFKVNKAEMDWVIKRS 99
>gi|332029325|gb|EGI69308.1| RNA-binding protein fusilli [Acromyrmex echinatior]
Length = 677
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 249
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ + G + H SR +
Sbjct: 250 HKHHMGARYIEVYKASGEDF-------IGVAGGTSGEAHAFL--SRGAQV---------- 290
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF K +++ ED + +PDG+ATG+A+V F E+A
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +R+
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRA 383
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++C + +FF LD D VL V K +GR +G+AFV+FA
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R +G RY+E+FR + + + + + + P ++
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRATDPKQVILPPPPIAQLPPLLPQHIITS 410
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ +++RGLP+ I++F ++ I+ +H+ G+ +GEA+++ S
Sbjct: 411 GTR-KDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQMDS-- 467
Query: 229 EAKRAMCKDK-----MTIG--SRYVELFPSTPDE 255
EA C + M G RY+E+F + D+
Sbjct: 468 EASAYACATQRHHRYMIYGKKQRYIEVFQCSGDD 501
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 51/86 (59%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++++ +++ RGLP+ +I +FF+ + + + + P G+ GEA V F++ E
Sbjct: 183 EEVDNDCVVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEH 242
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ ++ ++
Sbjct: 243 RDMALKRHKHHMGARYIEVYKASGED 268
>gi|432909348|ref|XP_004078165.1| PREDICTED: epithelial splicing regulatory protein 1-like [Oryzias
latipes]
Length = 656
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 108/215 (50%), Gaps = 31/215 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 245 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 304
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N ++ + +DQ+
Sbjct: 305 HKHHMGNRYIEVYKATGEDFLKIAGGTTNEVAMF---------------LSREDQI---- 345
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---------EDKIHIACRPDGKATGEAYVEFVSV 227
I++MRGLPF+ +++ FF + +D I PDG+ TG+A+V F
Sbjct: 346 IVRMRGLPFTATYEQVLAFFSPKDGLNETCPVSGGKDGILFVRYPDGRPTGDAFVLFSCE 405
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
E A A+ K K +G RY+ELF ST E ++ +R
Sbjct: 406 EHALCALRKHKEILGKRYIELFKSTAAEVQQVLNR 440
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
K+++ +++ RGLP+ +I +FF+ I + + G+ GEA V FVS E
Sbjct: 237 KEKVCDNTVIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFVSEE 296
Query: 229 EAKRAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 297 HRDLALQRHKHHMGNRYIEVYKAT 320
>gi|307196545|gb|EFN78075.1| RNA-binding protein 35A [Harpegnathos saltator]
Length = 760
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 249
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ V G + H SR
Sbjct: 250 HKHHMGARYIEVYKASGEDF-------VGVAGGTSGEAHAFL--SRGAEV---------- 290
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF K ++ ED + +PDG+ATG+A+V F E+A
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +R+
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRA 383
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 31/219 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++C + +FF LD D VL V K +GR +G+AFV+FA
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R +G RY+E+FR + + ++ + + PPP + +
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRAIDPKQVVQ------PPPRIVQLPSIIP 404
Query: 171 QMEHT-----EILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVE 223
Q T + +++RGLP+ I++F ++ I+ +H+ G+ +GEA+++
Sbjct: 405 QHIITCGTRKDCVRLRGLPYEAVVEHILEFMGEHSKNIVFQGVHMVYNAQGQPSGEAFIQ 464
Query: 224 FVSVEEAKRAMCKDK-----MTIG--SRYVELFPSTPDE 255
S EA C + M G RY+E+F + D+
Sbjct: 465 MDS--EASAYACATQRHHRYMIFGKKQRYIEVFQCSGDD 501
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++E+ +++ RGLP+ +I +FF+ + + + + P G+ GEA V F++ E
Sbjct: 183 EEVENDCVVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEH 242
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ ++
Sbjct: 243 RDMALKRHKHHMGARYIEVYKAS 265
>gi|148223399|ref|NP_001079524.1| epithelial splicing regulatory protein 1 [Xenopus laevis]
gi|82241595|sp|Q7ZY29.1|ESRP1_XENLA RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|27694832|gb|AAH44002.1| MGC53361 protein [Xenopus laevis]
Length = 688
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + ++ I PD + TG+A+V F E A+ A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ ++ +G+RY+E+FR + Q N +S P P N +D
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNRYSSAPLIPLPTPPIIPVLPQPF-IPPVNVRD 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I++F ++ I +H+ G+ +G+++++ S +
Sbjct: 447 ------CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSAD 500
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 RAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 EMIDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 280 RDLALQRHKHHMGNRYIEVYKATGED 305
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFA 105
PP +RLRGLP+ T DI +F D+ +++N GR SG++F+
Sbjct: 439 IPPVNVRDCIRLRGLPYAATIEDILEFLGEFS-ADIRTHGVHMVLNHQGRPSGDSFIQMK 497
Query: 106 GPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 SADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 549
>gi|37932182|gb|AAP69824.1| SWAN ribonucleoprotein [Xenopus laevis]
Length = 877
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 53 PPPPSF--PVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQ 109
PPP + P V L GLP ++ DI + F GL I V+L + GR +G A V P
Sbjct: 296 PPPLNHDDPYVCLHGLPLPVSEADIKELFHGLRIDGIVILTDPMGRHNGSALVKLITPHD 355
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------- 159
AL+R+R MG+R++EV + + + + + HG PP
Sbjct: 356 TFEALKRNRMLMGQRFIEVSPATERQWIVNGGHMLKQQNV---GHHGPPPLMQQLITRSK 412
Query: 160 -PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
P+ R + EH + ++GLP + ++ FFK I+ED I+IA +GKATG
Sbjct: 413 SPNPQSRPRSRSPHEHGFCVYLKGLPHEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATG 472
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
E ++EF + E+ K A+C+ K +G+R+V++ P T
Sbjct: 473 EGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPIT 506
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP + + FF L+IV+ + NG+ +GE F+ F + AL R
Sbjct: 432 VYLKGLPHEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+V+V ++ + Y+ H P D + +H
Sbjct: 492 KQYMGNRFVQVHPITKKAMLEKIDMIHKKMQSYNYGEHKDAP-------LDAEFDKHGPR 544
Query: 178 L--KMRGLPFSVKKSEIVQFF--KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
L + LP+S+ + +I FF + + I E+ + + +G+ G+A V+F S ++A+++
Sbjct: 545 LWGHLSNLPYSIMRKDISHFFISEGFAIDENAVQLLTDNNGQCIGQALVQFRSEDDARKS 604
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 802 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 861
Query: 237 -DKMTIGSRYVEL 248
++ IGSR V+L
Sbjct: 862 LNERPIGSRKVKL 874
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQMEHTEI 177
+ V + + + N + + D PP PSRA M T +
Sbjct: 63 TIKGSKVSLLLSSKTEMQNMIELSRRRFETANADL---PPANPSRAV-LTPTPGMGSTTV 118
Query: 178 LKMRGLPFSV 187
L LP +V
Sbjct: 119 LSRVNLPTTV 128
>gi|52346028|ref|NP_001005057.1| epithelial splicing regulatory protein 1 [Xenopus (Silurana)
tropicalis]
gi|82182765|sp|Q6DEZ7.1|ESRP1_XENTR RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|49899931|gb|AAH76946.1| MGC89324 protein [Xenopus (Silurana) tropicalis]
Length = 687
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + ++ I PD + TG+A+V F E A+ A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ ++ +G+RY+E+FR + Q N +S P P N +D
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNRYSSAPLIPLPTPPIIPVLPQPF-IPPVNVRD 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I++F ++ I +H+ G+ +G+++++ S +
Sbjct: 447 ------CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSAD 500
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 RAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 222 IDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 281
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 282 LALQRHKHHMGNRYIEVYKATGED 305
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFA 105
PP +RLRGLP+ T DI +F D+ +++N GR SG++F+
Sbjct: 439 IPPVNVRDCIRLRGLPYAATIEDILEFLGEFS-ADIRTHGVHMVLNHQGRPSGDSFIQMK 497
Query: 106 GPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 SADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 549
>gi|390361165|ref|XP_793087.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 492
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 112/210 (53%), Gaps = 29/210 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
V+R RGLP++ T ++ FF +I+ + N +GR SGE FV F + A+
Sbjct: 9 VIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQAM 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++D+ + +RY+E+F+ KR + E + + + G+ D E
Sbjct: 69 KKDKNYLQKRYIELFKSKRSEM----------EWVTNRNSGGA------------DGGEG 106
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLPFS K EI +FF I + I + DG+ TGEA+V F S E A++A+
Sbjct: 107 --LVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDNDGRRTGEAFVLFASKEIAEKAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSR 264
K K +G RY+E+F S PDE RRA + +R
Sbjct: 165 KKHKSHMGHRYIEVFKSFPDELRRATNPTR 194
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDK-IHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ MRGLPFSV + +I +FF + IH +GK G A V+F + +EAK AM K
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDI---NGKRNGFAAVDFRTHDEAKAAMKK 383
Query: 237 DKMTIGSRYVELF 249
DK IGSRY+ELF
Sbjct: 384 DKNNIGSRYIELF 396
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI-VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF+ T+ DI +FF G +V++ + NG+ +G A V F + + A+++D+
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKDKN 386
Query: 120 NMGRRYVEVF 129
N+G RY+E+F
Sbjct: 387 NIGSRYIELF 396
>gi|324510500|gb|ADY44391.1| RNA-binding protein sym-2, partial [Ascaris suum]
Length = 603
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 26/211 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ TD D+ +FF GL+I L ++ GR +GEA V F Q E AL+R
Sbjct: 172 VVRARGLPWQATDHDVAQFFVGLNIAPGGVALCLSAEGRRNGEALVRFEESEQRELALKR 231
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R + RY+EV+R +D+ A S A R+ +
Sbjct: 232 HRHFLHNRYIEVYRATGEDFLQVAAGS----------------SSEAVRFVSRGG---AM 272
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
I++MRGLP+ +++I +FF ++E I + DG+ TG+A+V F +
Sbjct: 273 IVRMRGLPYDCTEAQIREFFASGDNGCTVMEGGILFVNKSDGRPTGDAFVMFDDEAAGQL 332
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A+ K K TIGSRY+ELF ST E ++ +RS
Sbjct: 333 ALTKHKHTIGSRYIELFRSTQAEVQQVVNRS 363
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 119/268 (44%), Gaps = 53/268 (19%)
Query: 15 SDGYEVGSKRQRMMEPNPYF-------------AVSSSASGFQPYGYGGGFPPPPSFPVV 61
S+ E+ KR R N Y A SS+ + GG +V
Sbjct: 222 SEQRELALKRHRHFLHNRYIEVYRATGEDFLQVAAGSSSEAVRFVSRGGAM-------IV 274
Query: 62 RLRGLPFNCTDIDICKFFA----GLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEFAL 114
R+RGLP++CT+ I +FFA G +++ +L VNK +GR +G+AFV+F + AL
Sbjct: 275 RMRGLPYDCTEAQIREFFASGDNGCTVMEGGILFVNKSDGRPTGDAFVMFDDEAAGQLAL 334
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ + +G RY+E+FR + + V + + + N KD
Sbjct: 335 TKHKHTIGSRYIELFRSTQAEVQQVVNRSLESVQV-------------VVQGNRKD---- 377
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEF---VSVEE 229
+++RGLP+ IV+F D I+ +H+ G +GEA+++ +S
Sbjct: 378 --CIRLRGLPYEAHVENIVEFLGDAARHIVFQGVHMVYNAQGHPSGEAFIQMDSEISAAT 435
Query: 230 AKRAMCKDKMTIG--SRYVELFPSTPDE 255
A M IG RY+E+F +P++
Sbjct: 436 AAAIAHNKYMQIGKKQRYIEVFQCSPED 463
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 47/87 (54%)
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ +++ +++ RGLP+ ++ QFF I + + +G+ GEA V F E
Sbjct: 164 ESEVDSAVVVRARGLPWQATDHDVAQFFVGLNIAPGGVALCLSAEGRRNGEALVRFEESE 223
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ + A+ + + + +RY+E++ +T ++
Sbjct: 224 QRELALKRHRHFLHNRYIEVYRATGED 250
>gi|390361167|ref|XP_003729861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 455
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 112/210 (53%), Gaps = 29/210 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
V+R RGLP++ T ++ FF +I+ + N +GR SGE FV F + A+
Sbjct: 9 VIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQAM 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++D+ + +RY+E+F+ KR + E + + + G+ D E
Sbjct: 69 KKDKNYLQKRYIELFKSKRSEM----------EWVTNRNSGGA------------DGGEG 106
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLPFS K EI +FF I + I + DG+ TGEA+V F S E A++A+
Sbjct: 107 --LVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDNDGRRTGEAFVLFASKEIAEKAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSR 264
K K +G RY+E+F S PDE RRA + +R
Sbjct: 165 KKHKSHMGHRYIEVFKSFPDELRRATNPTR 194
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDK-IHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ MRGLPFSV + +I +FF + IH +GK G A V+F + +EAK AM K
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDI---NGKRNGFAAVDFRTHDEAKAAMKK 383
Query: 237 DKMTIGSRYVELFPSTPDE 255
DK IGSRY+ELF + +E
Sbjct: 384 DKNNIGSRYIELFLHSSEE 402
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI-VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF+ T+ DI +FF G +V++ + NG+ +G A V F + + A+++D+
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKDKN 386
Query: 120 NMGRRYVEVF 129
N+G RY+E+F
Sbjct: 387 NIGSRYIELF 396
>gi|410912184|ref|XP_003969570.1| PREDICTED: epithelial splicing regulatory protein 2-like [Takifugu
rubripes]
Length = 740
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL I L +N GR +GEA V F P + AL+R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLTIAKGGVALCLNAQGRRNGEALVRFINPEHRDLALER 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N ++ K E+
Sbjct: 285 HKHHMGNRYIEVYKATGEEFLKIAGGTSN----------------EVTQFLSK---ENQV 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ F + D + PDG+ TG+A+V F E A+ A
Sbjct: 326 IIRMRGLPFTATPQEVLSFIGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T ++ F D + LL K +GR +G+AFV+F+ + A
Sbjct: 326 IIRMRGLPFTATPQEVLSFIGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP---------PPSRAK 164
L++ +Q +G+RY+E+FR + + ++ I + SP PP
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLI--STLPPSPIVPVSVLTTPPFLPT 443
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYV 222
+D +++RGLP++ +I++F ++ I +H+ G+ +G+A++
Sbjct: 444 ASTTRD------CVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFI 497
Query: 223 EFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
+ S ++A K K T+ RYVE+F + +E
Sbjct: 498 QLKSPDKAFLVAQKCHKKTMKDRYVEVFQCSTEE 531
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ K+ +++ +++ RGLP+ +I +FFK I + + + G+ GEA V F++
Sbjct: 215 SKKEPVDNETVIRARGLPWQSSDQDIARFFKGLTIAKGGVALCLNAQGRRNGEALVRFIN 274
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E A+ + K +G+RY+E++ +T +E
Sbjct: 275 PEHRDLALERHKHHMGNRYIEVYKATGEE 303
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 55 PPSFPV-------VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAF 101
PP P VRLRGLP+ DI +F G VD+ +++N+ GR SG+AF
Sbjct: 438 PPFLPTASTTRDCVRLRGLPYTAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAF 496
Query: 102 VVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPP 159
+ P + Q+ ++ M RYVEVF+C ++ + +N G+ SPP
Sbjct: 497 IQLKSPDKAFLVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGGTLNRSGL-------SPP 549
Query: 160 PSR 162
P +
Sbjct: 550 PCK 552
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++M+GLP++ +I+ FF+ Y++ D + I G+ +GEA + F S E AK+A+ +
Sbjct: 664 LVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEMAKQAVAE 723
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI---VDVLLVNKNGRFSGEAFVVF 104
+VR++GLP+N DI FF G + ++L N +G+ SGEA + F
Sbjct: 664 LVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITF 711
>gi|344246677|gb|EGW02781.1| RNA-binding protein 12 [Cricetulus griseus]
Length = 997
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGYCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV----ASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+Q MG R+++V ++ + N+ YD R N + +
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFS--YDQ---------REMVLNPEGDVS 540
Query: 174 HTEI-LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
++ + +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A++
Sbjct: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDARK 600
Query: 233 A 233
+
Sbjct: 601 S 601
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 922 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 981
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 982 LNDRPIGSRKVKL 994
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|325303152|tpg|DAA34329.1| TPA_inf: splicing factor hnRNP-F [Amblyomma variegatum]
Length = 231
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 31/208 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFA--------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
V+R+RGLP++ T +I FF G++ V + L ++ GR SGEA++ +E
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTAKECHIKGGINGVHMTL-SREGRPSGEAYIELESEQDME 69
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
LQR +++G RY+EVF+ KR + + V G + D ND
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRSE----MDWVVKRSGAHQQD-----------SLNDG-- 112
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLPF K EI QFF +I+ + I + G++TGEA+V+F + + A+
Sbjct: 113 -----CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAE 167
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA 259
+AM K K IG RY+E+F S+ E R A
Sbjct: 168 KAMGKHKEKIGHRYIEIFKSSLQEVRSA 195
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L + GR +GEAFV FA E A+ +
Sbjct: 114 VRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKH 173
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV 140
++ +G RY+E+F+ Q+ +AV
Sbjct: 174 KEKIGHRYIEIFKSSLQEVRSAV 196
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFF--KDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+L++RGLP+S K EI+ FF K+ I + +H+ +G+ +GEAY+E S ++ +
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTAKECHIKGGINGVHMTLSREGRPSGEAYIELESEQDMEI 70
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ + IG RY+E+F S E RS
Sbjct: 71 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKRS 101
>gi|355705000|gb|EHH30925.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++ LP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVSALPWSCSADEVMRFFSDRKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>gi|324506224|gb|ADY42662.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 416
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 118/241 (48%), Gaps = 51/241 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLP++ DI +FF GLD+ DV++ + GR SGEAFV A E AL+R +
Sbjct: 108 VVRLRGLPYSANVDDIKEFFKGLDVADVVIDKEQGGRPSGEAFVRLASKEHAELALERSK 167
Query: 119 QNMGRRYVEVFRCKRQDYYNAV---------------------ASEVNYEGIYDNDFH-- 155
NMG RYVEVFR ++ N+ AS+ Y G D
Sbjct: 168 NNMGSRYVEVFRSSGEEMDNSFYTSRGIPPPMAGPIPLRGLSPASDPRY-GYRDRYGGYG 226
Query: 156 -----------GSPPPS----------RAKRYN-DKDQMEHTEILK--MRGLPFSVKKSE 191
G P P+ R RY + D+ E+ K MRGLP++V +
Sbjct: 227 GRFGGPMRGGAGYPRPAPYDRPYYERDRYSRYEPEYDEFEYDAAAKVFMRGLPYNVTALD 286
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
I +FFK +E I + D + +G+ V F ++ EA+ A+ ++K IGSRY+ELFP
Sbjct: 287 IEEFFKPLNCVE--IKLGYNEDRRLSGDGIVLFSTMAEARDALSRNKNNIGSRYIELFPG 344
Query: 252 T 252
T
Sbjct: 345 T 345
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
P +RLRGLPF + D+ F G+ + + +GR SGE +V V+ AL
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR + RY+EVF + V V GS + +
Sbjct: 63 KLDRNEINGRYIEVFTVSEGELAMMVRHGV---------IRGSG--------ESESRYAS 105
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S +I +FFK + + + I G+ +GEA+V S E A+ A+
Sbjct: 106 NYVVRLRGLPYSANVDDIKEFFKGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELAL 163
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
+ K +GSRYVE+F S+ +E
Sbjct: 164 ERSKNNMGSRYVEVFRSSGEE 184
>gi|340722803|ref|XP_003399791.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus terrestris]
gi|350424200|ref|XP_003493719.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus impatiens]
Length = 414
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 39/214 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++ T +I KFF+ I + + +++ GR SGEA+V +E A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+RDR +MG RY+EVF+ KR + V S +N E D+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGMNLENAMDDG-------------------- 113
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA
Sbjct: 114 ---CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERA 170
Query: 234 MCKDKMTIGSR----------YVELFPSTPDEAR 257
+ K K IG R Y+E+F S+ E R
Sbjct: 171 LQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVR 204
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 67/254 (26%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+I+ L + GR +GEA+V F E ALQ+
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 118 RQNMGRR----------YVEVFRCKRQDYYNAVASEV----------------------- 144
++ +G R Y+E+FR + ++ ++
Sbjct: 175 KEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASIGPKMRGGPMGGFNQRPAPYDRGSRFGG 234
Query: 145 ------NYEGIYDNDFHGSPPPSRAK---------------------RYNDKDQMEHTEI 177
N G + DF G P S R + ++ I
Sbjct: 235 MNRFSNNSRGSRNRDFDGGPWGSGNNFDSRGGSMGMRGGLDMKGGNFRGSGDTWGGNSGI 294
Query: 178 --LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF + +I FF+ + + + I G+ +GEA VEF + EEA +AM
Sbjct: 295 HSIHMRGLPFKATEQDIADFFRPIEPV--NVRIILENGGRPSGEADVEFATHEEAVKAMS 352
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 353 KDKSHMSHRYIELF 366
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSV 227
D + ++K+RGLP+S EI++FF D I K +H+ +G+ +GEAYVE ++
Sbjct: 7 DHDDEGYVVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTL 66
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E+ ++A +D+ +G RY+E+F + E RS
Sbjct: 67 EDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRS 102
>gi|197215644|gb|ACH53036.1| RNA binding motif protein 12, isoform 1 (predicted) [Otolemur
garnettii]
Length = 1475
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ T+ D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSATENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTVPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + +I
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREIILNPEGDGNSGKI 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNSGQGLGQALVQFKNEDDARKS 601
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 869 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 928
Query: 237 -DKMTIGSR 244
+ IGSR
Sbjct: 929 LNDRPIGSR 937
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|291389582|ref|XP_002711385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Oryctolagus
cuniculus]
Length = 415
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGATGVHFIYAREGRQSGEAFVELESEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++ G Y++VF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESTGHPYIKVFKSHR--------TELDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + + K TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDSEDKITGEAFVQFASQEVAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG R +E+F S+ +E R
Sbjct: 170 GKHKERIGHRSIEVFKSSQEEVR 192
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 101/257 (39%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VRLRGLPF CT +I +FF+GL+IV L V+ + +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDSEDKITGEAFVQFASQEVAEKALGKH 172
Query: 117 --------------------------------------DRQNMGRRYVEVF------RCK 132
DR RY+ + R +
Sbjct: 173 KERIGHRSIEVFKSSQEEVRSYSDPALKFMSVQRPGPYDRPGTAGRYIGIAKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q ++
Sbjct: 233 PGAYSAGYGGYEEYSGLGDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFPVQSTTGHCVR 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ ++ I FF + ++HI PD + TGEA VEF + E A AM KD+
Sbjct: 293 MRGLPYKATENHIYNFFSPLNPV--RVHIEIGPDERVTGEADVEFATHEGAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEA 256
+ R +ELF ++ A
Sbjct: 351 NMQHRCIELFLNSTTGA 367
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP+ T+ I FF+ L+ V V + + + R +GEA V FA A+ +DR
Sbjct: 291 VRMRGLPYKATENHIYNFFSPLNPVRVHIEIGPDERVTGEADVEFATHEGAVAAMSKDRA 350
Query: 120 NMGRRYVEVF-RCKRQDYYNAVASEV 144
NM R +E+F Y A +S+V
Sbjct: 351 NMQHRCIELFLNSTTGASYGAYSSQV 376
>gi|307181801|gb|EFN69244.1| RNA-binding protein 35A [Camponotus floridanus]
Length = 762
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 188 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 247
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ V G + H SR +
Sbjct: 248 HKHHMGPRYIEVYKASGEDF-------VGIAGGTSGEAHAFL--SRGAQV---------- 288
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF K +++ E+ + +PDG+ATG+A+V F E+A
Sbjct: 289 IVRMRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFVKKPDGRATGDAFVLFAKEEDA 348
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +R+
Sbjct: 349 VKALSKHRDLIGSRYIELFRSTTAEVQQVLNRA 381
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 21/214 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++C + +FF ++D VL V K +GR +G+AFV+FA
Sbjct: 289 IVRMRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFVKKPDGRATGDAFVLFAKEEDA 348
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R +G RY+E+FR + + + + + + P ++
Sbjct: 349 VKALSKHRDLIGSRYIELFRSTTAEVQQVLNRATDPKQVILPPPPITQLPPLLPQHIITS 408
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ +++RGLP+ I++F ++ I+ +H+ G+ +GEA+++ S
Sbjct: 409 GTR-KDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQMDS-- 465
Query: 229 EAKRAMCKDK-----MTIG--SRYVELFPSTPDE 255
EA C + MT G RY+E+F + D+
Sbjct: 466 EASAYACASQRHHRYMTYGKKQRYIEVFQCSGDD 499
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 46/80 (57%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+++++ +++ RGLP+ +I +FF+ + + + + P G+ GEA V F++ E
Sbjct: 181 EEVDNDCVVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEH 240
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K +G RY+E++
Sbjct: 241 RDMALKRHKHHMGPRYIEVY 260
>gi|327271497|ref|XP_003220524.1| PREDICTED: RNA-binding protein 12-like [Anolis carolinensis]
Length = 1418
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 19/254 (7%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVS-SSASGFQPYGYGGGFPPPPSFPVVRLRGLPF 68
G G G + S M NP A+ +S SG +P P P V + G+PF
Sbjct: 258 GMNGSGTGMNLSSNMNPMFM-NPINAIQINSQSGVKP------LPINPDDLYVSIHGMPF 310
Query: 69 NCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
+ T+ D+ FF GL + V +L + GR +G FV F P AL+R+R M +RYVE
Sbjct: 311 SATESDVKDFFHGLRVDAVHILKDHVGRNNGNGFVKFCSPPDTFEALKRNRMLMIQRYVE 370
Query: 128 VFRCKRQDYYNAVASEVNYEGIY--DNDFHGSP-------PPSRAKRYNDKDQMEHTEIL 178
V + + A + ++ H SP P+ KR + + +
Sbjct: 371 VSPATERQWVTA-GGHITFKQTMGPSGQNHPSPQTLSMSKSPNGQKRSRSRSPHDQGFCV 429
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
++GLPF + ++ FFK I+ED I+IA P+GKA GE +VEF + + K A+C K
Sbjct: 430 YLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKALGEGFVEFRNEADYKAALCHHK 489
Query: 239 MTIGSRYVELFPST 252
IG+R++++ P T
Sbjct: 490 QYIGNRFIQVHPIT 503
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ GE FV F + AL
Sbjct: 429 VYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKALGEGFVEFRNEADYKAALCHH 488
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q +G R+++V ++ + ++ D R N + +M ++
Sbjct: 489 KQYIGNRFIQVHPITKKAMLEKIEMIRKRLQSFNYD-------QREIMINTEGEMGPPKL 541
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++ +P+++ K EI+QF + + E+ I I +G+ G+A V+ + E+A+++
Sbjct: 542 CARISNIPYNITKMEIIQFLEGLAVDENSIQILVDTNGQGLGQALVQLKTEEDARKSERL 601
Query: 237 DKMTIGSRYVEL 248
+ + R V L
Sbjct: 602 HRKKLNGRDVVL 613
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 812 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMTTGEAMVAFESRDEAMAAVVD 871
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 872 LNDRPIGSRKVKLM 885
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I V L S+ E + SR+
Sbjct: 60 TGGAIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 AIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|74184867|dbj|BAE39056.1| unnamed protein product [Mus musculus]
Length = 914
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 228 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 287
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 288 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 346
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 347 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 406
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 407 KAALCRHKQYMGNRFIQVHPIT 428
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 354 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 413
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 414 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 466
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 467 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 523
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 839 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 898
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 899 LNDRPIGSRKVKL 911
>gi|380029403|ref|XP_003698363.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Apis florea]
Length = 413
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 39/214 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++ T +I KFF+ I + + +++ GR SGEA+V +E A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+RDR +MG RY+EVF+ KR + V S +N E D+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGMNLENAMDDG-------------------- 113
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA
Sbjct: 114 ---CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERA 170
Query: 234 MCKDKMTIGSR----------YVELFPSTPDEAR 257
+ K K IG R Y+E+F S+ E R
Sbjct: 171 LQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVR 204
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 109/253 (43%), Gaps = 66/253 (26%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+I+ L + GR +GEA+V F E ALQ+
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 118 RQNMGRR----------YVEVFRCKRQDYYNAVASEV----------------------- 144
++ +G R Y+E+FR + ++ ++
Sbjct: 175 KEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASIGPKMRGPMGGFNQRPAPYDRGSRFGGM 234
Query: 145 -----NYEGIYDNDFHGSPPPSRAK---------------------RYNDKDQMEHTEI- 177
N G + DF G P S R + ++ I
Sbjct: 235 NRFSNNSRGSRNRDFDGGPWGSGNNFDSRGGSMGMRGGLDMKGGNFRGSGDTWGGNSGIH 294
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ MRGLPF + +I FF+ + + + I G+ +GEA VEF + EEA +AM K
Sbjct: 295 SIHMRGLPFKATEQDIADFFRPIEPV--NVRIILENGGRPSGEADVEFATHEEAVKAMSK 352
Query: 237 DKMTIGSRYVELF 249
DK + RY+ELF
Sbjct: 353 DKSHMSHRYIELF 365
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSV 227
D + ++K+RGLP+S EI++FF D I K +H+ +G+ +GEAYVE ++
Sbjct: 7 DHDDEGYVVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTL 66
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E+ ++A +D+ +G RY+E+F + E RS
Sbjct: 67 EDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRS 102
>gi|449486103|ref|XP_004175453.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Taeniopygia
guttata]
Length = 1411
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 103/202 (50%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF T+ D+ FF GL + V +L + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFTATESDVKDFFLGLRVDAVHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------PSRAKRYNDKD 170
M +RYVEV + + A + ++ PP P+ KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQTMGPSGQAHPPSQAHPRSKSPTGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
EH + ++GLPF + ++ FFK I+ED I+IA P+GKA GE +VEF + +
Sbjct: 425 PHEHGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C K IG+R++++ P T
Sbjct: 485 KAALCHHKQYIGNRFIQVHPIT 506
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ GE FV F + AL
Sbjct: 432 VYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
+Q +G R+++V ++ A+ +++ +F Y+ ++ + + E
Sbjct: 492 KQYIGNRFIQVHPITKK----AMLEKIDMIRKRLQNF----------SYDQREILMNAEG 537
Query: 177 -------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +P+++ K EI+QF + + E+ + I +G+ G+A V+F + ++
Sbjct: 538 ESGLPKLCAHISNIPYNITKIEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDD 597
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A +A + + R V L T +E R E
Sbjct: 598 AHKAERLHRKKLNGRDVNLRLITVEEMRDIE 628
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 864 LNDRPIGSRKVKLM 877
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDVPPANASRSGPPPS 110
>gi|395830118|ref|XP_003788182.1| PREDICTED: RNA-binding protein 12 [Otolemur garnettii]
Length = 1478
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ T+ D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSATENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTVPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + +I
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREIILNPEGDGNSGKI 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNSGQGLGQALVQFKNEDDARKS 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 869 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 928
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 929 LNDRPIGSRKVKLM 942
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|308464398|ref|XP_003094466.1| CRE-TWK-4 protein [Caenorhabditis remanei]
gi|308247695|gb|EFO91647.1| CRE-TWK-4 protein [Caenorhabditis remanei]
Length = 1026
Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 24/206 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V R RGLP+ +D + +FFAGLDIV L ++ GR +GE V FA + AL+R
Sbjct: 584 VCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFATQESRDLALKR 643
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R + RY+EV++ ++ + VA+ + E + +F + +
Sbjct: 644 HRNFLLSRYIEVYKAGLDEFMH-VATGSSIEAM---EFVSA----------------NAV 683
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLP+ ++I FF+ K+ DKI R DG+ TG+A+V+F + E+A++ + K
Sbjct: 684 IVRMRGLPYDCTDTQIRAFFEPLKLT-DKILFITRTDGRPTGDAFVQFETEEDAQKGLLK 742
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ IG RY+ELF ST E ++ R
Sbjct: 743 HRQIIGQRYIELFKSTAAEVQQVVKR 768
Score = 90.5 bits (223), Expect = 7e-16, Method: Composition-based stats.
Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 20/205 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+RGLP++CTD I FF L + D +L +GR +G+AFV F + L +
Sbjct: 684 IVRMRGLPYDCTDTQIRAFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 743
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ +G+RY+E+F+ + A+EV N + SP + A + + + +
Sbjct: 744 RQIIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVTNAV---EAPEEKKKDC 792
Query: 178 LKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVS---VEEAKR 232
+++RGLP+ IV F D+ + +H+ G +GEA+++ +S
Sbjct: 793 VRLRGLPYEATVQHIVTFLGDFAQMVKFQGVHMVYNNQGNPSGEAFIQLISEAAAAATAA 852
Query: 233 AMCKDKMTIG--SRYVELFPSTPDE 255
+ + M +G RY+E+F S+ +E
Sbjct: 853 GVHNNFMCVGKKKRYIEVFQSSAEE 877
>gi|19070198|gb|AAL83754.1| SWAN [Mus musculus]
gi|21666374|gb|AAM73683.1| swan [Mus musculus]
gi|21666376|gb|AAM73684.1| swan [Mus musculus]
Length = 1003
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV----ASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+Q MG R+++V ++ + N+ YD R N + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFS--YDQ---------RELVLNPEGEVS 540
Query: 174 HTEI-LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
++ + +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A +
Sbjct: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHK 600
Query: 233 A 233
+
Sbjct: 601 S 601
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 928 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 987
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 988 LNDRPIGSRKVKL 1000
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|26325168|dbj|BAC26338.1| unnamed protein product [Mus musculus]
Length = 841
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 150 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 209
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 210 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 268
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 269 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 328
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 329 KAALCRHKQYMGNRFIQVHPIT 350
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 276 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 335
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 336 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 388
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 389 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 445
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 766 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 825
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 826 LNDRPIGSRKVKL 838
>gi|344279911|ref|XP_003411729.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Loxodonta
africana]
Length = 936
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSLGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 861 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 920
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 921 LNDRPIGSRKVKLI 934
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|83320105|ref|NP_001032746.1| RNA-binding protein 12 [Rattus norvegicus]
gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus]
gi|149030841|gb|EDL85868.1| rCG37481, isoform CRA_a [Rattus norvegicus]
gi|149030844|gb|EDL85871.1| rCG37481, isoform CRA_a [Rattus norvegicus]
Length = 1032
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMVLNPEGEVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKS 601
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 957 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 1016
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 1017 LNDRPIGSRKVKL 1029
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|344279913|ref|XP_003411730.1| PREDICTED: RNA-binding protein 12-like isoform 2 [Loxodonta
africana]
Length = 924
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSLGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 849 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 908
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 909 LNDRPIGSRKVKLI 922
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|211830818|gb|AAH26891.2| Rbm12 protein [Mus musculus]
Length = 887
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 191 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 250
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 251 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 309
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 310 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 369
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 370 KAALCRHKQYMGNRFIQVHPIT 391
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 317 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 376
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 377 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 429
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A ++
Sbjct: 430 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKS 486
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 812 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 871
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 872 LNDRPIGSRKVKL 884
>gi|405952153|gb|EKC19997.1| Heterogeneous nuclear ribonucleoprotein H [Crassostrea gigas]
Length = 544
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 28/206 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-GLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFA 113
VVRLRGLP++ T+ ++ KFF ++IVD ++ GR SGE FV V+
Sbjct: 43 VVRLRGLPWSATESEVVKFFGEDVEIVDGEQGVHFTFSREGRPSGECFVELIDEDNVQRG 102
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ ++MG RY+EVFR K+ SE+++ + G P S
Sbjct: 103 LKCHNKHMGNRYIEVFRSKK--------SEMDW--VIKRAGPGQMPGS------------ 140
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++++RGLPF K EI QFF +I+ + I + G++TGEAYV+F S E A++A
Sbjct: 141 CEAVVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQGRSTGEAYVQFASQEIAEKA 200
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRA 259
+ K K IG RY+E+F S EA+ A
Sbjct: 201 LSKHKERIGHRYIEIFKSGMQEAQNA 226
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFA 105
G G P VVRLRGLPF C+ +I +FF GL+IV +L ++ GR +GEA+V FA
Sbjct: 133 GPGQMPGSCEAVVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQGRSTGEAYVQFA 192
Query: 106 GPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 141
E AL + ++ +G RY+E+F+ Q+ NA+
Sbjct: 193 SQEIAEKALSKHKERIGHRYIEIFKSGMQEAQNAMG 228
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +S+I FF + + A P+G+ TGEA V+F + +A AM +
Sbjct: 391 VHMRGLPFQALESDIADFFSPLTPVRVEFEFA--PNGRPTGEANVDFKTHSDAVEAMSRH 448
Query: 238 KMTIGSRYVELF-PSTP 253
K + RY+ELF STP
Sbjct: 449 KKNMQHRYIELFLNSTP 465
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF + DI FF+ L V V NGR +GEA V F A+ R ++
Sbjct: 391 VHMRGLPFQALESDIADFFSPLTPVRVEFEFAPNGRPTGEANVDFKTHSDAVEAMSRHKK 450
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 451 NMQHRYIELF 460
>gi|26330362|dbj|BAC28911.1| unnamed protein product [Mus musculus]
Length = 992
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 601
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 977 LNDRPIGSRKVKL 989
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|114155120|ref|NP_083673.3| RNA-binding protein 12 [Mus musculus]
gi|114155125|ref|NP_733486.2| RNA-binding protein 12 [Mus musculus]
gi|262527571|sp|Q8R4X3.3|RBM12_MOUSE RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|26348755|dbj|BAC38017.1| unnamed protein product [Mus musculus]
gi|30851612|gb|AAH52473.1| RNA binding motif protein 12 [Mus musculus]
Length = 992
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 601
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 977 LNDRPIGSRKVKL 989
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|25153681|ref|NP_741422.1| Protein HRPF-2 [Caenorhabditis elegans]
gi|351059337|emb|CCD74180.1| Protein HRPF-2 [Caenorhabditis elegans]
Length = 610
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 26/208 (12%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
PP +RLRGLPFN T+ DI +FFAGL I V V GR +GEA+V F + A+
Sbjct: 60 PPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKAM 119
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR+ + RY+EVF + A E +E D D +G E
Sbjct: 120 ENDRKEISNRYIEVFTVE--------ADEAEFEFRPDPDSNG----------------EV 155
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR--PDGKATGEAYVEFVSVEEAKR 232
++++RG+P+S K+ ++ +FF+ + +I I P + +GEA+V F + + A++
Sbjct: 156 NHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEK 215
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAE 260
AM + +GSRYVE+F S+ E RA+
Sbjct: 216 AMDYNNRHMGSRYVEVFMSSMVEFNRAK 243
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 53/241 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI--VDVLLVNKNG---RFSGEAFVVFAGPIQVEFAL 114
V+RLRG+P++C + D+ KFF GL+ ++++ G R SGEAFV F E A+
Sbjct: 158 VIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAM 217
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNA----------------------------------- 139
+ ++MG RYVEVF ++ A
Sbjct: 218 DYNNRHMGSRYVEVFMSSMVEFNRAKGGGSGEYSASYERTGIRPLMSVDSGYDHGRRGGG 277
Query: 140 -VASEVNYEGIYDNDFHGSPPPSRAKRYND-KDQMEHTEILK---------MRGLPFSVK 188
+ +Y+ YD+ GS R YN DQ ++ + MRGLP+
Sbjct: 278 GRYGDSSYDRGYDDYNRGSYGGRRDYGYNGGHDQGGRSDYGRGGDDPLRVYMRGLPYDAD 337
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
I FF + KI I G+ +G+A EF + + + A+ ++ +G RYVEL
Sbjct: 338 DHAIAAFFSPLRCHSVKIGI--NETGRPSGDAIAEFDNYNDLQVALSRNNQRMGRRYVEL 395
Query: 249 F 249
F
Sbjct: 396 F 396
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 42 GFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEA 100
G YG GG P V +RGLP++ D I FF+ L V + +N+ GR SG+A
Sbjct: 313 GRSDYGRGGDDPL-----RVYMRGLPYDADDHAIAAFFSPLRCHSVKIGINETGRPSGDA 367
Query: 101 FVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
F ++ AL R+ Q MGRRYVE+F
Sbjct: 368 IAEFDNYNDLQVALSRNNQRMGRRYVELF 396
>gi|170577075|ref|XP_001893871.1| RNA binding protein [Brugia malayi]
gi|158599846|gb|EDP37285.1| RNA binding protein, putative [Brugia malayi]
Length = 519
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 117/246 (47%), Gaps = 56/246 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRG+PF+ T+ D+ +FF+GL++ DV++ + GR SGEAFV FA E AL+R+R
Sbjct: 133 VVRLRGIPFSATNNDVKEFFSGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNR 192
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEV---------------------------------- 144
NMG RYVEVFR + + V
Sbjct: 193 NNMGSRYVEVFRSSGDELEKSREGHVVPPTSLRSLAVERSFPTPRTEPIPLRFAAAKLGG 252
Query: 145 -------NYEGIYDNDFHGSP-------PPSRAKRYND---KDQMEHTEILK--MRGLPF 185
Y G N G P P SR R+ D +D + + K MRGLP+
Sbjct: 253 VRPYRREEYGGPLRNVSMGRPRAGPYDAPYSRYARFQDYGYEDDFDCDDPAKIYMRGLPY 312
Query: 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
S +I FFK +E I + D + +G+A V F +V EA+ AM ++K IG+RY
Sbjct: 313 SANALDIEDFFKPLNCVE--IQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRY 370
Query: 246 VELFPS 251
+ELF +
Sbjct: 371 IELFTA 376
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 43/206 (20%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFA 113
P + +RLRGLPF+ + D+ F GL++ V + GR SGE +V + E A
Sbjct: 50 PNTSNYIRLRGLPFSAKEDDVRAFLEGLEVKSVTFTLTSMGRASGECYVELVDKVAAEEA 109
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+ D+Q M RY+E D+D
Sbjct: 110 KRFDKQEMNNRYIE---------------------------------------GDQD-TP 129
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ ++++RG+PFS +++ +FF ++ + + I G+ +GEA+V F S + A+ A
Sbjct: 130 YNFVVRLRGIPFSATNNDVKEFFSGLEVAD--VVIDKELGGRPSGEAFVRFASKQHAEMA 187
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRA 259
+ +++ +GSRYVE+F S+ DE ++
Sbjct: 188 LERNRNNMGSRYVEVFRSSGDELEKS 213
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 32 PYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-V 90
PY A S + FQ YGY F + +RGLP++ +DI FF L+ V++ L
Sbjct: 277 PYDAPYSRYARFQDYGYEDDFDCDDPAKIY-MRGLPYSANALDIEDFFKPLNCVEIQLGF 335
Query: 91 NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
N++ R SG+A V+F + A+ R++Q +G RY+E+F
Sbjct: 336 NEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRYIELF 374
>gi|126330654|ref|XP_001364439.1| PREDICTED: g-rich sequence factor 1 isoform 1 [Monodelphis
domestica]
Length = 478
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 107/224 (47%), Gaps = 37/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV--NKNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+I+D+ V ++ + +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIIDITFVMDHRGRKKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASE--------------------------------VN 145
++ +G RY+E+F +R + V S +
Sbjct: 310 KEEIGNRYIEIFPSRRNEVRTHVGSHKGKKVAPSLLKGGPEPGPSLDEHDRSEELRAMMT 369
Query: 146 YEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+E + + H P A+ D M + MRGLPF +IV FF K + +
Sbjct: 370 FESEKEGELHKEAPEKSAEAA-DFGTMPSLHFVHMRGLPFQANAQDIVNFFAPLKPV--R 426
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 427 ITMEYSSSGKATGEADVHFETHEDAVAAMGKDRSHVQHRYIELF 470
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ KFF I + L+N++G+ G+A V V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLKFFFDCRIRNGENGIHFLLNRDGKRRGDALVEMESEQDVKKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ MG+RYVEV+ +D + S P+ ND
Sbjct: 210 EKHHLYMGQRYVEVYEINNEDVDALMKS-----------LQAKSNPA----VNDG----- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF II D + K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLNII-DITFVMDHRGRKKTGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG+RY+E+FPS +E R
Sbjct: 307 LKHKEEIGNRYIEIFPSRRNEVR 329
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 396 PSLHFVHMRGLPFQANAQDIVNFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 455
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 456 GKDRSHVQHRYIELF 470
>gi|350594874|ref|XP_003483994.1| PREDICTED: RNA-binding protein 12 isoform 1 [Sus scrofa]
gi|350594876|ref|XP_003483995.1| PREDICTED: RNA-binding protein 12 isoform 2 [Sus scrofa]
gi|350594878|ref|XP_003483996.1| PREDICTED: RNA-binding protein 12 isoform 3 [Sus scrofa]
Length = 933
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAVENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFSV K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSVTKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 858 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 917
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 918 LNDRPIGSRKVKL 930
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|395541913|ref|XP_003772881.1| PREDICTED: G-rich sequence factor 1 [Sarcophilus harrisii]
Length = 441
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 35/223 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV--NKNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V ++ R +GEA+V F P AL +
Sbjct: 213 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDHRGRRKTGEAYVQFEEPEMANQALLKH 272
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP------------------ 159
++ +G RY+E+F +R + V S + + +G+ P
Sbjct: 273 KEEIGNRYIEIFPSRRNEVRTHVGSHKGKKAVPSMAKYGTEPELNFEEHDGSEELRPITT 332
Query: 160 -------------PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
P + D + + MRGLPF +I+ FF K + +I
Sbjct: 333 FESEKEMELPKEAPEKTPEAADFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--RI 390
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 391 TMEYSSSGKATGEADVHFETHEDAIAAMSKDRSHVQHRYIELF 433
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ KFF+ I + L+N++G+ G+A V V+ AL
Sbjct: 113 LIRAQGLPWSCTVEDVLKFFSDCRIRNGEHGIHFLLNRDGKRRGDALVELESEQDVKKAL 172
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ MG+RYVEV+ +D + S ND
Sbjct: 173 EKHHLYMGQRYVEVYEINNEDVDALMKSLQAKSNPVVNDG-------------------- 212
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I+ D + + TGEAYV+F E A +A+
Sbjct: 213 --VVRLRGLPYSCNEKDIVDFFAGLNIV-DITFVMDHRGRRKTGEAYVQFEEPEMANQAL 269
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG+RY+E+FPS +E R
Sbjct: 270 LKHKEEIGNRYIEIFPSRRNEVR 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F PS V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 355 FGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDA 414
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 415 IAAMSKDRSHVQHRYIELF 433
>gi|190402267|gb|ACE77677.1| RNA binding motif protein 12, isoform 1 (predicted) [Sorex araneus]
Length = 1520
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 38 SSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRF 96
+S SG +P P P V + G+PF+ + D+ FF GL + V LL + GR
Sbjct: 289 NSQSGVKP------LPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRN 342
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG 156
+G V F P AL+R+R M +RYVEV + + A + ++
Sbjct: 343 NGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQT 401
Query: 157 SPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207
PPP S KR + E + ++GLPF + ++ FFK I+ED I+
Sbjct: 402 HPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY 461
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
IA P+GKATGE +VEF + + K A+C+ K +GSR++++ P T
Sbjct: 462 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGSRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGSRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 911 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVFD 970
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 971 LNDRPIGSRKVKLM 984
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|395521342|ref|XP_003764777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 465
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 113/252 (44%), Gaps = 57/252 (22%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P P VRLRGLPFNC DI +FF+GL+I+ +L V+ G+ SGEAFV FA
Sbjct: 104 PDPAGDGYVRLRGLPFNCNKEDIVEFFSGLEIMPNGIMLQVDFRGKNSGEAFVQFASQEI 163
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD---------------------------YYNAVAS 142
E AL++ ++ MG RY+E+F+ + + YY ++
Sbjct: 164 AEKALKKHKEKMGHRYIEIFKSSQAEVHTHYDLPQKKRVRQRPGPYDRPPTGRYYGSLGR 223
Query: 143 EVNYEGI-----------------YDNDFH-GSPPPSRAKRYNDKD-------QMEHTEI 177
EG+ Y ND+H G P D Q
Sbjct: 224 GAGLEGMRYGAHEIMYGGYEDYVGYSNDYHFGRDPRYFLAVSGDSYGSGWSTFQSPAGHF 283
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ + +I FF K + I + DG+ TGEA VEF + E+A AM KD
Sbjct: 284 VHMRGLPYKATEKDIYDFFSPLKPVGAYIEVGA--DGRVTGEADVEFATHEDAVAAMSKD 341
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 342 KANMQHRYIELF 353
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ D+ FF+G I + + + + GR SGEAFV ++E AL
Sbjct: 11 VVKVRGLPWSCSASDVQNFFSGCRIRNGVAGIHFMYTREGRPSGEAFVELESEEEIELAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ ++ M RYVEVFR ++ V + SP P+
Sbjct: 71 KKHKETMAHRYVEVFR----------SNGVEMDWTLKRTAPSSPDPAG------------ 108
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF+ K +IV+FF +I+ + I + GK +GEA+V+F S E A++A+
Sbjct: 109 DGYVRLRGLPFNCNKEDIVEFFSGLEIMPNGIMLQVDFRGKNSGEAFVQFASQEIAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K +G RY+E+F S+ E
Sbjct: 169 KKHKEKMGHRYIEIFKSSQAEVH 191
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 29 EPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL 88
+P + AVS + YG G P+ V +RGLP+ T+ DI FF+ L V
Sbjct: 257 DPRYFLAVSGDS-----YGSGWSTFQSPAGHFVHMRGLPYKATEKDIYDFFSPLKPVGAY 311
Query: 89 L-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
+ V +GR +GEA V FA A+ +D+ NM RY+E+F N+VA+ +
Sbjct: 312 IEVGADGRVTGEADVEFATHEDAVAAMSKDKANMQHRYIELF-------LNSVAAADS-- 362
Query: 148 GIYD 151
G+YD
Sbjct: 363 GVYD 366
>gi|402589318|gb|EJW83250.1| hypothetical protein WUBG_05840 [Wuchereria bancrofti]
Length = 451
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 56/247 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRG+PF+ T+ D+ +FF+GL++ DV++ + GR SGEAFV FA E AL+R+R
Sbjct: 65 VVRLRGIPFSATNDDVKEFFSGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNR 124
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEV---------------------------------- 144
NMG RYVEVFR + + +
Sbjct: 125 NNMGSRYVEVFRSSGDELEKSREGHIAPPTSLRSLAVERSFPTPRTEPIPLRFAAAKLGG 184
Query: 145 -------NYEGIYDNDFHGSP-------PPSRAKRYND---KDQMEHTEILK--MRGLPF 185
Y G N G P P SR R+ D +D + + K MRGLP+
Sbjct: 185 VRPYRREEYGGPLRNVSMGRPRAGPYDAPYSRYARFQDYGYEDDFDCDDPAKIYMRGLPY 244
Query: 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
S +I FFK +E I + D + +G+A V F +V EA+ AM ++K IG+RY
Sbjct: 245 SANALDIEDFFKPLNCVE--IQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRY 302
Query: 246 VELFPST 252
+ELF +
Sbjct: 303 IELFTAA 309
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 94 GRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND 153
GR SGE +V E A + D+Q M RY+EVF N SEV + ++
Sbjct: 2 GRASGECYVELVDKAAAEEAKRFDKQEMNNRYIEVF--------NVTESEVVWMTRHN-- 51
Query: 154 FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
R D+ + + ++++RG+PFS ++ +FF ++ + + I
Sbjct: 52 ---------VIRKGDQ-ETPYNFVVRLRGIPFSATNDDVKEFFSGLEVAD--VVIDKELG 99
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
G+ +GEA+V F S + A+ A+ +++ +GSRYVE+F S+ DE ++
Sbjct: 100 GRPSGEAFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKS 145
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 32 PYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-V 90
PY A S + FQ YGY F + +RGLP++ +DI FF L+ V++ L
Sbjct: 209 PYDAPYSRYARFQDYGYEDDFDCDDPAKIY-MRGLPYSANALDIEDFFKPLNCVEIQLGF 267
Query: 91 NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
N++ R SG+A V+F + A+ R++Q +G RY+E+F
Sbjct: 268 NEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRYIELF 306
>gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a [Mus musculus]
gi|148674225|gb|EDL06172.1| mCG5227, isoform CRA_a [Mus musculus]
Length = 773
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 601
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
>gi|58476100|gb|AAH89313.1| Hnrpf protein [Mus musculus]
Length = 395
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 27/189 (14%)
Query: 74 DICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEV 128
D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EV
Sbjct: 6 DVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 65
Query: 129 FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVK 188
F+ R +E+++ + P+ A ND +++RGLPF
Sbjct: 66 FKSHR--------TEMDWVLKHSG-------PNSADSANDG-------FVRLRGLPFGCT 103
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K K IG RY+E+
Sbjct: 104 KEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 163
Query: 249 FPSTPDEAR 257
F S+ +E R
Sbjct: 164 FKSSQEEVR 172
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 109/257 (42%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 93 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 152
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 153 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 212
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 213 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 272
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 273 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 330
Query: 240 TIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 331 NMQHRYIELFLNSTTGA 347
>gi|270009942|gb|EFA06390.1| hypothetical protein TcasGA2_TC009268 [Tribolium castaneum]
Length = 751
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF+GL++ L ++ GR +GEA + F + AL+R
Sbjct: 227 VVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMALKR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ + + S A+ + +
Sbjct: 287 HKHHIGPRYIEVYRASGEDFLSVAGGK----------------SSEAQAFLSRGA---AV 327
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F S +A
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +RS
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTAEVQQVLNRS 420
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++CT + FFA ++D VL V K +GR +G+AFV+FA
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R+ +G RY+E+FR + + + P +
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTAEVQQVLNRSLEARTYEPEPLPPLLPHMPLLPQHYIT 447
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
E +++RGLP+ + I++F +Y II +H+ G+ +GEA+++ S E
Sbjct: 448 SGTKKECIRLRGLPYEAQVEHILEFLGEYAKNIIFQGVHMVYNAQGQPSGEAFIQMDS-E 506
Query: 229 EAKRAMCKDK----MTIG--SRYVELF 249
++ + K MT G RY+E+F
Sbjct: 507 QSACITAQQKHHRYMTFGKKQRYIEVF 533
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ +++ RGLP+ +I +FF + + + + G+ GEA ++F S E
Sbjct: 220 DEIDSNCVVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEH 279
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K IG RY+E++
Sbjct: 280 RDMALKRHKHHIGPRYIEVY 299
>gi|354477974|ref|XP_003501192.1| PREDICTED: RNA-binding protein 12 [Cricetulus griseus]
Length = 1463
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGYCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMVLNPEGDVSSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDARKSEHL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHIVTLEDMREIE 628
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 854 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 913
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 914 LNDRPIGSRKVKLM 927
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|395505306|ref|XP_003756983.1| PREDICTED: RNA-binding protein 12 [Sarcophilus harrisii]
Length = 1415
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMETDVKDFFHGLRVDAVHLLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQTHPPPQTLVRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF S +
Sbjct: 425 PHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P P F V L+GLPF + + FF LDIV+ + NG+ +GE FV F
Sbjct: 425 PHEPGF-CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESD 483
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
+ AL R +Q MG R+++V ++ + + D R N +
Sbjct: 484 YKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREIILNTE 536
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +PF++ K +I+QF ++ + E+ +HI G+ G+A V+F + ++
Sbjct: 537 GDSSPKLCAHISNIPFNITKMDILQFLEEIPVDENAVHILVDNTGQGLGQALVQFKTEDD 596
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A +A + + R L T ++ R E
Sbjct: 597 AHKAERLHRKKLNGREALLHVITLEDMREIE 627
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 864 LNDRPIGSRKVKLM 877
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|291190682|ref|NP_001167168.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
gi|223648432|gb|ACN10974.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
Length = 396
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+ I + + GR SGEAFV ++ A+
Sbjct: 8 VVRVRGLPWSCSVDEVRRFFSDCKIANNGTSIHFTSTREGRPSGEAFVELENEDDLKIAV 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP +
Sbjct: 68 KKDRETMGHRYVEVFK----------SNNVEMDWVMKHSGPNSP------------ETTG 105
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 106 DGLVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDFQGRSTGEAFVQFASQDIAEKAL 165
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 166 KKHKERIGHRYIEIFKSSRAEVR 188
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 34/222 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF C+ +I +F +GL+IV L ++ GR +GEAFV FA E AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA------------- 163
++ +G RY+E+F+ R + + G+ + P R
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYDRPSGGRGYNMMGGRGGGSYD 227
Query: 164 -------------KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207
RY D Q + MRGLP+ +++I FF + ++H
Sbjct: 228 RARRGGYGGGVSDGRYGDSSSSFQSTTGHCVHMRGLPYRATETDIYNFFSPLNPV--RVH 285
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ PDG+ TGEA VEF + E+A AM KDK + RYVELF
Sbjct: 286 VEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 327
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 18 YEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGF-------------------PPPPSF 58
YE K M P PY S G GGG SF
Sbjct: 191 YEPQRKPMGMQRPGPYDRPSGGRGYNMMGGRGGGSYDRARRGGYGGGVSDGRYGDSSSSF 250
Query: 59 P-----VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEF 112
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA
Sbjct: 251 QSTTGHCVHMRGLPYRATETDIYNFFSPLNPVRVHVEIGPDGRVTGEADVEFATHEDAVA 310
Query: 113 ALQRDRQNMGRRYVEVF 129
A+ +D+ NM RYVE+F
Sbjct: 311 AMSKDKANMQHRYVELF 327
>gi|288806582|ref|NP_001165773.1| G-rich RNA sequence binding factor 1 [Xenopus (Silurana)
tropicalis]
gi|189442327|gb|AAI67701.1| Unknown (protein for MGC:186196) [Xenopus (Silurana) tropicalis]
Length = 348
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 114/210 (54%), Gaps = 21/210 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+VR+RGLP++CT D+ FF ++ + + N++G+ G+A + F V+ A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ ++ MG+RYVEVF +++ + + N H + P+R + Q
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLL-----------NRMHSALSPTRPSSMSLSPQSSM 111
Query: 175 TE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++RGLP+S + +I+ FF I ++ I G+ +GEA+V+F+S E
Sbjct: 112 ASPPSDGVVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +A+ K K IGSRY+E+FPS +E + A
Sbjct: 172 ADQALLKHKQEIGSRYIEIFPSRRNEIQTA 201
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 115/237 (48%), Gaps = 36/237 (15%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVE 111
PPS VVRLRGLP++C++ DI FF+GLDI D ++++ GR SGEAFV F +
Sbjct: 114 PPSDGVVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEHAD 173
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNA---------VASEVNYEGIYD---------ND 153
AL + +Q +G RY+E+F +R + A V + +YD D
Sbjct: 174 QALLKHKQEIGSRYIEIFPSRRNEIQTARFPFRRRKGVTFAPTIKDLYDPDNCINNTSKD 233
Query: 154 FHGSPP------------PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI 201
P +++ D M + +RGLPF +I FF + I
Sbjct: 234 LLSDVPENGHINDYVKEMSAKSMDVQDFTVMSPVHDIHIRGLPFHASGQDIANFF--HPI 291
Query: 202 IEDKIHIACRPD-GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+ KI I D G ATGEA V F++ E+A AM K++ Y+EL+ ++ E++
Sbjct: 292 MPLKISIEYSADAGGATGEAVVRFLTHEDAVAAMAKNRCHTQHGYLELYLNSSPESK 348
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I+++RGLP+S +++ FF D + + +H DGK G+A +EF S E+ ++A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K +G RYVE+F EA +R
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLLNR 90
>gi|452823782|gb|EME30790.1| RNA-binding protein [Galdieria sulphuraria]
Length = 739
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 113/214 (52%), Gaps = 21/214 (9%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDV-------LLVNKNGRFSGEAFVVFAGPIQV 110
F ++R+RGLPF+ + + +FF G++I ++ N++G GEAFV FA +
Sbjct: 369 FFIIRMRGLPFSASADQVARFFDGIEIAGCRSNGGIHIVQNQDGHPIGEAFVEFASEDAL 428
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNA-------VASEVNYEGIYDNDFHGSPPPSRA 163
ALQR +Q MG+RY+E+FR + N VA + +N S SR+
Sbjct: 429 NKALQRHKQMMGKRYIELFRSSLMEMLNTIERHGGPVARAAIEATVCENSVGTS---SRS 485
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
+D L++RGLPF S+I FF +Y+I+ I+ + GEA+V+
Sbjct: 486 VLNSDAST---CSFLRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVNNGLDRPKGEAFVQ 542
Query: 224 FVSVEEAKRAM-CKDKMTIGSRYVELFPSTPDEA 256
F SV+E A+ KDK+ +GSRYVELF ++ E
Sbjct: 543 FSSVDERNDALKKKDKLYMGSRYVELFEASEAEV 576
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 23/235 (9%)
Query: 30 PNPYFAVSSS--ASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV 87
P PY SSS S + G P + ++RLRGLP++ T D+ F G ++
Sbjct: 227 PIPYDLQSSSLLGSAIEASPVAAGVP---TGSIIRLRGLPWSATKEDVLNFLEGAQVIPC 283
Query: 88 ---LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV 144
++N+ G+ GEAFV V AL+ RQ +G RY+EVF+ Q+ ++ +
Sbjct: 284 AVHFVLNQQGKPRGEAFVQLLSVDDVNRALELHRQVLGHRYIEVFKSTPQEMSTVLSRQ- 342
Query: 145 NYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE---ILKMRGLPFSVKKSEIVQFFKDYKI 201
N S P Y++ ++ ++ I++MRGLPFS ++ +FF +I
Sbjct: 343 -------NGRSTSLAPFSRTTYSNVSSIDDSKPFFIIRMRGLPFSASADQVARFFDGIEI 395
Query: 202 I----EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
IHI DG GEA+VEF S + +A+ + K +G RY+ELF S+
Sbjct: 396 AGCRSNGGIHIVQNQDGHPIGEAFVEFASEDALNKALQRHKQMMGKRYIELFRSS 450
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKNG--RFSGEAFVVFAGPIQVEFALQR 116
+R+RGLPF+ T DI FFA IV + VN NG R GEAFV F+ + AL++
Sbjct: 497 LRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVN-NGLDRPKGEAFVQFSSVDERNDALKK 555
Query: 117 -DRQNMGRRYVEVFRCKRQDYYNAVASEV---------------------------NYEG 148
D+ MG RYVE+F + + S + + E
Sbjct: 556 KDKLYMGSRYVELFEASEAEVSALLGSNLCSTITSAASSIANSSSAKSTFSNPNTKSNEL 615
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ S K K + ++MRGLPF S+I FF D+ I E + +
Sbjct: 616 LTWESVGRGWDASSWKSNIPKSHIIPNRTVRMRGLPFRATISDIQFFFSDFHITESDVVL 675
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT-IGSRYVELFPSTPDEA 256
G+ +GEA+V F + EEA+ A+ + + IG RY+ELF T D++
Sbjct: 676 GFDKMGRPSGEAWVTFGTEEEARNAVSQLQHAHIGKRYIELFLCTQDKS 724
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+++RGLP+S K +++ F + ++I +H GK GEA+V+ +SV++ RA+
Sbjct: 256 IIRLRGLPWSATKEDVLNFLEGAQVIPCAVHFVLNQQGKPRGEAFVQLLSVDDVNRALEL 315
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ +G RY+E+F STP E SR
Sbjct: 316 HRQVLGHRYIEVFKSTPQEMSTVLSR 341
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 31 NPYFAVSSSASGFQPYGYGGGFPPPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVD-- 86
N S G+ + P P VR+RGLPF T DI FF+ I +
Sbjct: 613 NELLTWESVGRGWDASSWKSNIPKSHIIPNRTVRMRGLPFRATISDIQFFFSDFHITESD 672
Query: 87 -VLLVNKNGRFSGEAFVVFAGPIQVEFAL-QRDRQNMGRRYVEVFRCKRQDYYNAVASEV 144
VL +K GR SGEA+V F + A+ Q ++G+RY+E+F C QD ++ S V
Sbjct: 673 VVLGFDKMGRPSGEAWVTFGTEEEARNAVSQLQHAHIGKRYIELFLCT-QDKSVSLGS-V 730
Query: 145 NYEG 148
+ EG
Sbjct: 731 SLEG 734
>gi|334311305|ref|XP_001381494.2| PREDICTED: RNA-binding protein 12 [Monodelphis domestica]
Length = 1413
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMETDVKDFFHGLRVDAVHLLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQTHPPPQTLVRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF S +
Sbjct: 425 PHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P P F V L+GLPF + + FF LDIV+ + NG+ +GE FV F
Sbjct: 425 PHEPGF-CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESD 483
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
+ AL R +Q MG R+++V ++ + + D R N +
Sbjct: 484 YKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREIILNTE 536
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +PF++ K +I+QF ++ + E+ +HI G+ G+A V+F + ++
Sbjct: 537 GDSSPKLCAHISNIPFNITKMDILQFLEEIPVDENAVHILVDNTGQGLGQALVQFKTEDD 596
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A +A + + R L T ++ R E
Sbjct: 597 AHKAERLHRKKLNGREALLHVITLEDMREIE 627
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 864 LNDRPIGSRKVKLM 877
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|312032395|ref|NP_001185821.1| RNA-binding protein 12 [Bos taurus]
Length = 953
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVTSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 878 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 937
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 938 LNDRPIGSRKVKL 950
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|189238842|ref|XP_970801.2| PREDICTED: similar to fusilli CG8205-PD [Tribolium castaneum]
Length = 683
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI KFF+GL++ L ++ GR +GEA + F + AL+R
Sbjct: 227 VVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMALKR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ + + S A+ + +
Sbjct: 287 HKHHIGPRYIEVYRASGEDFLSVAGGKS----------------SEAQAFLSRGA---AV 327
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F S +A
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IGSRY+ELF ST E ++ +RS
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTAEVQQVLNRS 420
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++CT + FFA ++D VL V K +GR +G+AFV+FA
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R+ +G RY+E+FR + + + P +
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTAEVQQVLNRSLEARTYEPEPLPPLLPHMPLLPQHYIT 447
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
E +++RGLP+ + I++F +Y II +H+ G+ +GEA+++ S E
Sbjct: 448 SGTKKECIRLRGLPYEAQVEHILEFLGEYAKNIIFQGVHMVYNAQGQPSGEAFIQMDS-E 506
Query: 229 EAKRAMCKDK----MTIG--SRYVELF 249
++ + K MT G RY+E+F
Sbjct: 507 QSACITAQQKHHRYMTFGKKQRYIEVF 533
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ +++ RGLP+ +I +FF + + + + G+ GEA ++F S E
Sbjct: 220 DEIDSNCVVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEH 279
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K IG RY+E++
Sbjct: 280 RDMALKRHKHHIGPRYIEVY 299
>gi|426241394|ref|XP_004014576.1| PREDICTED: RNA-binding protein 12 isoform 1 [Ovis aries]
Length = 931
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVTSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 856 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 916 LNDRPIGSRKVKL 928
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|229368727|gb|ACQ63010.1| RNA binding motif protein 12, isoform 2 (predicted) [Dasypus
novemcinctus]
Length = 900
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENSVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 825 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 884
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 885 LNDRPIGSRKVKL 897
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPAANASRSGPPPS 110
>gi|426241396|ref|XP_004014577.1| PREDICTED: RNA-binding protein 12 isoform 2 [Ovis aries]
Length = 926
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVTSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 851 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 911 LNDRPIGSRKVKL 923
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|74136241|ref|NP_001028012.1| RNA-binding protein 12 [Macaca mulatta]
gi|30173333|sp|Q8SQ27.1|RBM12_MACMU RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|19070196|gb|AAL83753.1| SWAN [Macaca mulatta]
gi|355563178|gb|EHH19740.1| RNA-binding motif protein 12 [Macaca mulatta]
gi|355784534|gb|EHH65385.1| RNA-binding motif protein 12 [Macaca fascicularis]
gi|380808606|gb|AFE76178.1| RNA-binding protein 12 [Macaca mulatta]
gi|380808608|gb|AFE76179.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944626|gb|AFI35918.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944628|gb|AFI35919.1| RNA-binding protein 12 [Macaca mulatta]
Length = 932
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|443701155|gb|ELT99751.1| hypothetical protein CAPTEDRAFT_226859 [Capitella teleta]
Length = 390
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFF-AGLDIVD-----VLLVNKNGRFSGEAFV 102
GGG F +VR+RGLP++ + ++ F A ++I+ L K+GR SGEA++
Sbjct: 7 GGGDDRDEGF-IVRIRGLPWSASHDEVANFLEADVNIMGGRSGIHLTYTKDGRPSGEAYI 65
Query: 103 VFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR 162
A V AL++D+ +MGRRY+E + YN V E+ + P++
Sbjct: 66 ELASEEDVAKALEKDKHHMGRRYIEGMQSSLYLIYNHVDLEMEW-------MVKRSGPNQ 118
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
ND ++++RGLPF K E+ FF +I+ + I + G++TG+A+V
Sbjct: 119 VMGNNDA-------VIRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQGRSTGDAFV 171
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+F S + A+RA K K IG RY+E+F S+ E R +
Sbjct: 172 QFASQDIAERAQQKHKEKIGHRYIEIFKSSLQELRNS 208
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+RLRGLPF C+ ++ FF+GL+IV L+ + GR +G+AFV FA E A Q+
Sbjct: 126 VIRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQGRSTGDAFVQFASQDIAERAQQK 185
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV 140
++ +G RY+E+F+ Q+ N++
Sbjct: 186 HKEKIGHRYIEIFKSSLQELRNSM 209
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF + +IV+FFK + IH PDGKA+G+A V+F + +EA AM +D
Sbjct: 272 VHMRGLPFQAAEDDIVEFFKPLAPVNIAIHYM--PDGKASGQADVDFATHQEASEAMSRD 329
Query: 238 KMTIGSRYVELF 249
+ ++ RY+ELF
Sbjct: 330 RESMEHRYIELF 341
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF + DI +FF L V++ + +G+ SG+A V FA + A+ RDR+
Sbjct: 272 VHMRGLPFQAAEDDIVEFFKPLAPVNIAIHYMPDGKASGQADVDFATHQEASEAMSRDRE 331
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 332 SMEHRYIELF 341
>gi|417413254|gb|JAA52964.1| Putative rna binding protein rbm12/swan, partial [Desmodus
rotundus]
Length = 960
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 328 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 388 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 447 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 506
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 507 KAALCRHKQYMGNRFIQVHPIT 528
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 454 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 513
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + T++
Sbjct: 514 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSTKV 566
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 567 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 623
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 885 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 944
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 945 LNDRPIGSRKVKL 957
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 110
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 84
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 85 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 132
>gi|284004917|ref|NP_001164804.1| RNA-binding protein 12 [Oryctolagus cuniculus]
gi|217038336|gb|ACJ76629.1| RNA binding motif protein 12 (predicted) [Oryctolagus cuniculus]
Length = 940
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP----------SRAKRYNDK 169
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQTHPPPPQTLPRSKSPSGQKRSRSR 424
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 484
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 YKAALCRHKQYMGNRFIQVHPIT 507
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 433 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 492
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 493 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVNSAKV 545
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 546 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 602
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 865 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 924
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 925 LNDRPIGSRKVKLI 938
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|170587834|ref|XP_001898679.1| fusilli [Brugia malayi]
gi|158593949|gb|EDP32543.1| fusilli, putative [Brugia malayi]
Length = 467
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 24/197 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ TD DI +FF GL+I L ++ GR +GEA V F Q E AL+R
Sbjct: 27 IVRTRGLPWQATDHDIAQFFIGLNIAAGGVALCLSPEGRRNGEALVRFEDSEQRELALKR 86
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R + RY+EV+R D+ VA+ N E + R+ +
Sbjct: 87 HRHFLHNRYIEVYRATGSDFLQ-VAAGSNSEAV---------------RFVSRGST-GAM 129
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
I++MRGLP+ +++I++FF + K+ + I + DG+ TG+A+V F + E ++
Sbjct: 130 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 189
Query: 233 AMCKDKMTIGSRYVELF 249
A+ K K TIG+RY+ELF
Sbjct: 190 ALTKHKRTIGTRYIELF 206
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 65/269 (24%)
Query: 15 SDGYEVGSKRQRMMEPNPYFAV---------------SSSASGFQPYGYGGGFPPPPSFP 59
S+ E+ KR R N Y V +S A F G G
Sbjct: 77 SEQRELALKRHRHFLHNRYIEVYRATGSDFLQVAAGSNSEAVRFVSRGSTGAM------- 129
Query: 60 VVRLRGLPFNCTDIDICKFFA----GLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEF 112
+VR+RGLP++CT+ I +FFA G + D +L VNK +GR +G+AFV+F +
Sbjct: 130 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 189
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL + ++ +G RY+E+FR Q Y + +EV + + + + +D+ M
Sbjct: 190 ALTKHKRTIGTRYIELFR---QLNYRSTQAEV--QQVVNRNLE-----------SDQRMM 233
Query: 173 EH----TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
H + +++RGLP+ IV+F E HI + D + +S
Sbjct: 234 VHGSSRKDCIRLRGLPYEAHVENIVEFLG-----ETARHIMFQMDSE---------MSAA 279
Query: 229 EAKRAMCKDKMTIG--SRYVELFPSTPDE 255
A M IG RY+E+F +P++
Sbjct: 280 TAAALAHNKYMQIGKKQRYIEVFQCSPED 308
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++ RGLP+ +I QFF I + + P+G+ GEA V F E+ + A+ +
Sbjct: 27 IVRTRGLPWQATDHDIAQFFIGLNIAAGGVALCLSPEGRRNGEALVRFEDSEQRELALKR 86
Query: 237 DKMTIGSRYVELFPST 252
+ + +RY+E++ +T
Sbjct: 87 HRHFLHNRYIEVYRAT 102
>gi|301762096|ref|XP_002916483.1| PREDICTED: RNA-binding protein 12-like [Ailuropoda melanoleuca]
gi|281346062|gb|EFB21646.1| hypothetical protein PANDA_004540 [Ailuropoda melanoleuca]
Length = 923
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 848 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 907
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 908 LNDRPIGSRKVKL 920
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|20521648|dbj|BAA34485.2| KIAA0765 protein [Homo sapiens]
Length = 952
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 326 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 385
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 386 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 444
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 445 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 504
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 505 KAALCRHKQYMGNRFIQVHPIT 526
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 452 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 511
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 512 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 564
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 565 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 621
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 877 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 936
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 937 LNDRPIGSRKVKL 949
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 24 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 79
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 80 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 108
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 24 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 82
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 83 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 130
>gi|284520924|ref|NP_001165219.1| RNA-binding protein 12 [Canis lupus familiaris]
Length = 923
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 848 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 907
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 908 LNDRPIGSRKVKL 920
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|197100361|ref|NP_001125474.1| RNA-binding protein 12 [Pongo abelii]
gi|75070796|sp|Q5RBM8.1|RBM12_PONAB RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12
gi|55728164|emb|CAH90832.1| hypothetical protein [Pongo abelii]
Length = 932
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 859 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 918
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V L+
Sbjct: 919 LNDRPIGSRKVNLY 932
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|37360080|dbj|BAC98018.1| mKIAA0765 protein [Mus musculus]
Length = 569
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 217 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 276
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 277 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 335
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 336 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 395
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 396 KAALCRHKQYMGNRFIQVHPIT 417
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 343 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 402
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 403 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 455
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A ++
Sbjct: 456 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHL 515
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 516 HRKKLNGREAFVHIVTLEDMREIE 539
>gi|405968884|gb|EKC33911.1| Epithelial splicing regulatory protein 2 [Crassostrea gigas]
Length = 727
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 114/212 (53%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L ++ GR +GEA V + AL+R
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRRNGEALVRLENEQNRDLALKR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G+RY+EV++ +D+ N VA N E F SR +
Sbjct: 285 HKHHIGQRYIEVYKATGKDFVN-VAGGSNSEA---QAFL-----SRGGQV---------- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-----EDKIHIACRPDGKATGEAYVEFVSVEEAK 231
I++MRGLPF+ ++++FF + E+ I PDG++TG+A+V S E+A
Sbjct: 326 IIRMRGLPFTATAQQVLEFFAREPSVSVLDGEEGILFVHYPDGRSTGDAFVLLASEEDAV 385
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A+ K + +G+RY+ELF ST E ++ +RS
Sbjct: 386 SALKKHREIMGTRYIELFKSTTAEVQQVLNRS 417
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 103/204 (50%), Gaps = 25/204 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFA---GLDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVE 111
++R+RGLPF T + +FFA + ++D +L V+ +GR +G+AFV+ A
Sbjct: 326 IIRMRGLPFTATAQQVLEFFAREPSVSVLDGEEGILFVHYPDGRSTGDAFVLLASEEDAV 385
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL++ R+ MG RY+E+F+ + + ++ + + +P P+ + + Q
Sbjct: 386 SALKKHREIMGTRYIELFKSTTAEVQQVLNRSMDPR---NPEPQETPLPAILTQLTPQSQ 442
Query: 172 MEHT-----------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATG 218
+ + + +++R +P + ++I+ F ++ II +H+ G+ +G
Sbjct: 443 LPYIPQSLITSGTRRDCIRLRNIPGGAQVTDILTFLGEFSQFIIFQGVHMVYTAQGEPSG 502
Query: 219 EAYVEFVSVEEAK-RAMCKDKMTI 241
EA+++ S E A+ A+ ++K I
Sbjct: 503 EAFIQMDSEESAQLTAINRNKRPI 526
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 10/96 (10%)
Query: 159 PPSRAKRYNDKDQMEHT---EILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPDG 214
PP + Y + HT ++ MRGLP + + +I+ FF+ + ++ + I I PDG
Sbjct: 635 PPISPQTY-----VTHTGPPTLVVMRGLPVNAQVQDILNFFQGFPEVTPENIQIQILPDG 689
Query: 215 KATGEAYVEFVSVEEAKRAMC-KDKMTIGSRYVELF 249
+ TG+A + F++ EA+RA+ + K T+G +ELF
Sbjct: 690 RLTGDALISFMTRSEAERAIATRGKQTMGQCLIELF 725
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++ +++ RGLP+ +I +FFK I + + + P G+ GEA V + +
Sbjct: 218 DIVDDNHVVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRRNGEALVRLENEQN 277
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
A+ + K IG RY+E++ +T
Sbjct: 278 RDLALKRHKHHIGQRYIEVYKAT 300
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNKNGRFSGEAFVVFAGPIQV 110
PP+ +V +RGLP N DI FF G V + + +GR +G+A + F +
Sbjct: 648 PPT--LVVMRGLPVNAQVQDILNFFQGFPEVTPENIQIQILPDGRLTGDALISFMTRSEA 705
Query: 111 EFAL-QRDRQNMGRRYVEVF 129
E A+ R +Q MG+ +E+F
Sbjct: 706 ERAIATRGKQTMGQCLIELF 725
>gi|332248953|ref|XP_003273629.1| PREDICTED: RNA-binding protein 12-like isoform 7 [Nomascus
leucogenys]
Length = 932
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|444729174|gb|ELW69601.1| RNA-binding protein 12 [Tupaia chinensis]
Length = 932
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------PSRAKRYNDKD 170
M +RYVEV + + A + ++ PP PS KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQTHPPSQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 25/211 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
+Q MG R+++V ++ + +++ +F Y+ ++ M +TE
Sbjct: 492 KQYMGNRFIQVHPITKK----GMLEKIDMIRKRLQNF----------SYDQREMMLNTEG 537
Query: 177 -------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++
Sbjct: 538 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQAVVQFKNEDD 597
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A+++ + + R + T ++ R E
Sbjct: 598 ARKSERLHRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|194387896|dbj|BAG61361.1| unnamed protein product [Homo sapiens]
Length = 731
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 105 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 164
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 165 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 223
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 224 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 283
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 284 KAALCRHKQYMGNRFIQVHPIT 305
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 231 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 290
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 291 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 343
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 344 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 400
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 656 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 715
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 716 LNDRPIGSRKVKL 728
>gi|19923345|ref|NP_006038.2| RNA-binding protein 12 [Homo sapiens]
gi|23510462|ref|NP_690051.1| RNA-binding protein 12 [Homo sapiens]
gi|311893287|ref|NP_001185767.1| RNA-binding protein 12 [Homo sapiens]
gi|312032348|ref|NP_001185769.1| RNA-binding protein 12 [Homo sapiens]
gi|353411938|ref|NP_001238775.1| RNA-binding protein 12 [Pan troglodytes]
gi|397523818|ref|XP_003831915.1| PREDICTED: RNA-binding protein 12 [Pan paniscus]
gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|15215375|gb|AAH12787.1| RNA binding motif protein 12 [Homo sapiens]
gi|15559252|gb|AAH13981.1| RNA binding motif protein 12 [Homo sapiens]
gi|19070194|gb|AAL83752.1| SWAN [Homo sapiens]
gi|19070200|gb|AAL83755.1| SWAN [Homo sapiens]
gi|21666372|gb|AAM73682.1| swan [Homo sapiens]
gi|119596588|gb|EAW76182.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596590|gb|EAW76184.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596594|gb|EAW76188.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|123993635|gb|ABM84419.1| RNA binding motif protein 12 [synthetic construct]
gi|123999855|gb|ABM87436.1| RNA binding motif protein 12 [synthetic construct]
gi|168278717|dbj|BAG11238.1| RNA binding motif protein 12 [synthetic construct]
gi|193787298|dbj|BAG52504.1| unnamed protein product [Homo sapiens]
gi|410216986|gb|JAA05712.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410216988|gb|JAA05713.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260650|gb|JAA18291.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260652|gb|JAA18292.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297724|gb|JAA27462.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297726|gb|JAA27463.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410355577|gb|JAA44392.1| RNA binding motif protein 12 [Pan troglodytes]
Length = 932
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|350529357|ref|NP_001121205.2| G-rich RNA sequence binding factor 1 [Xenopus laevis]
Length = 440
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 23/211 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFF------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLP++CT D+ FF G D V + N++G+ G+A + F V+ A
Sbjct: 95 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIF-NRDGKPRGDAVIEFESAEDVQKA 153
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+++ ++ MG+RYVEVF +++ + + N H + P+R + Q
Sbjct: 154 VEQHKKYMGQRYVEVFEMNQKEAESLL-----------NRMHSALSPTRPSSMSLSPQSS 202
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
I+++RGLP+S + +I+ FF I ++ I G+ +GEA+V+F+S E
Sbjct: 203 MASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQE 262
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +A+ K K IGSRY+E+FPS ++ + A
Sbjct: 263 HADQALLKHKQEIGSRYIEIFPSRRNDVQTA 293
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 36/237 (15%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVE 111
PPS +VRLRGLP++C++ DI FF+GLDI D ++++ GR SGEAFV F +
Sbjct: 206 PPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEHAD 265
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNA---------VASEVNYEGIYDND--------- 153
AL + +Q +G RY+E+F +R D A V + +YD D
Sbjct: 266 QALLKHKQEIGSRYIEIFPSRRNDVQTARFPFRRRKGVTFAPTIKDLYDPDNCINNTSKD 325
Query: 154 -FHGSPPPSRAKRY-----------NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI 201
P Y +D M + +RGLPF +I FF + I
Sbjct: 326 LLSDVPENGHINDYVKEMSAKSVDVHDFTVMSPVHDIHIRGLPFHASGQDIANFF--HPI 383
Query: 202 IEDKIHIACRPD-GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+ KI I D G ATGEA V F++ ++A AM K++ Y+EL+ ++ +++
Sbjct: 384 MPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAKNRCHSQHGYLELYLNSSTDSK 440
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I+++RGLP+S +++ FF D + D +H DGK G+A +EF S E+ ++A+
Sbjct: 95 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 154
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K +G RYVE+F EA +R
Sbjct: 155 EQHKKYMGQRYVEVFEMNQKEAESLLNR 182
>gi|50949507|emb|CAH10603.1| hypothetical protein [Homo sapiens]
Length = 954
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 328 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 388 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 447 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 506
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 507 KAALCRHKQYMGNRFIQVHPIT 528
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 454 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 513
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 514 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 566
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 567 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 626
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 627 HRKKLNGREAFVHVVTLEDMREIE 650
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 879 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 938
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 939 LNDRPIGSRKVKL 951
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 110
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 84
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 85 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 132
>gi|12053991|emb|CAC20441.1| RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKT 601
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|113951757|ref|NP_001039317.1| G-rich sequence factor 1 [Danio rerio]
gi|112418830|gb|AAI22227.1| Zgc:153305 [Danio rerio]
gi|182890996|gb|AAI64250.1| Zgc:153305 protein [Danio rerio]
Length = 301
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 108/178 (60%), Gaps = 15/178 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLP++CT+ DI +FF+GLD+V+ +++N+ G+ SG+AFV FA E AL++
Sbjct: 135 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK 194
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
DR+ +G RY+E+F + +A+ S+ + ND +P RA+ ++
Sbjct: 195 DREILGNRYIEIFPAMK----SAIPSQNRS---WQNDRVFTP---RAEDPPLRNTAVTKN 244
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ MRGLPF K +IV+FF +++ K+ + P+GK TGEA F + E+A AM
Sbjct: 245 VIHMRGLPFDAKAEDIVKFFAPVRLM--KVVVEFGPEGKPTGEAEAYFKTHEDAVLAM 300
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 111/212 (52%), Gaps = 33/212 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFA------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+V+ +GLP++CT DI FF+ G++ V +L NK G+ SG+AF+ V A
Sbjct: 38 IVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILY-NKYGKPSGQAFIELEHEEDVGKA 96
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L + R R +EV +D + A K+++E
Sbjct: 97 LDQHRHYPRDRLIEVREVTNKD-------------------------AEAILKASKERVE 131
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++++RGLP+S + +I++FF ++ED + I GK++G+A+VEF + A++A
Sbjct: 132 TDTVVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKA 191
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ KD+ +G+RY+E+FP+ A +++RS Q
Sbjct: 192 LKKDREILGNRYIEIFPAM-KSAIPSQNRSWQ 222
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 158 PPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGK 215
PP ++++Q + I++ +GLP+S +I+ FF + +I + +HI GK
Sbjct: 19 PPLPEYTPGSEENQAKELFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGK 78
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256
+G+A++E E+ +A+ + + R +E+ T +A
Sbjct: 79 PSGQAFIELEHEEDVGKALDQHRHYPRDRLIEVREVTNKDA 119
>gi|169641981|gb|AAI60694.1| LOC100158276 protein [Xenopus laevis]
Length = 348
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 23/211 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFF------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLP++CT D+ FF G D V + N++G+ G+A + F V+ A
Sbjct: 3 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIF-NRDGKPRGDAVIEFESAEDVQKA 61
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+++ ++ MG+RYVEVF +++ + + N H + P+R + Q
Sbjct: 62 VEQHKKYMGQRYVEVFEMNQKEAESLL-----------NRMHSALSPTRPSSMSLSPQSS 110
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
I+++RGLP+S + +I+ FF I ++ I G+ +GEA+V+F+S E
Sbjct: 111 MASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQE 170
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
A +A+ K K IGSRY+E+FPS ++ + A
Sbjct: 171 HADQALLKHKQEIGSRYIEIFPSRRNDVQTA 201
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 36/237 (15%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVE 111
PPS +VRLRGLP++C++ DI FF+GLDI D ++++ GR SGEAFV F +
Sbjct: 114 PPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEHAD 173
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNA---------VASEVNYEGIYDND--------- 153
AL + +Q +G RY+E+F +R D A V + +YD D
Sbjct: 174 QALLKHKQEIGSRYIEIFPSRRNDVQTARFPFRRRKGVTFAPTIKDLYDPDNCINNTSKD 233
Query: 154 -FHGSPPPSRAKRY-----------NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI 201
P Y +D M + +RGLPF +I FF + I
Sbjct: 234 LLSDVPENGHINDYVKEMSAKSVDVHDFTVMSPVHDIHIRGLPFHASGQDIANFF--HPI 291
Query: 202 IEDKIHIACRPD-GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+ KI I D G ATGEA V F++ ++A AM K++ Y+EL+ ++ +++
Sbjct: 292 MPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAKNRCHSQHGYLELYLNSSTDSK 348
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I+++RGLP+S +++ FF D + D +H DGK G+A +EF S E+ ++A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K +G RYVE+F EA +R
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLLNR 90
>gi|21740240|emb|CAD39131.1| hypothetical protein [Homo sapiens]
Length = 663
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 37 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 96
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 97 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 155
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 156 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 215
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 216 KAALCRHKQYMGNRFIQVHPIT 237
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 163 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 222
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 223 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 275
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 276 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 335
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 336 HRKKLNGREAFVHVVTLEDMREIE 359
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 588 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 647
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 648 LNDRPIGSRKVKL 660
>gi|358252891|dbj|GAA50442.1| epithelial splicing regulatory protein 1/2 [Clonorchis sinensis]
Length = 846
Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 23/206 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ TD+DI FF+GL+I + L+++K GR +GEA + F Q + AL++
Sbjct: 410 VIRARGLPWQATDLDIFHFFSGLNISNGGISLVLSKIGRRNGEALIRFTDQEQRDLALRK 469
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG+RYVEV+ + +++ +E + A+ + K +
Sbjct: 470 HKHHMGQRYVEVYAAQGREFVAFAGAET----------------TEAEEFLKKFTSPYQA 513
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+++MRGLP++ ++++FF + + E+ + R +G+ATG+A+V F + ++
Sbjct: 514 LIRMRGLPYATTVQQVLEFFSNTDCAVQFGEEGVLFVNRRNGRATGDAFVIFENQAIGEK 573
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARR 258
A+ IG+RY+ELF STP E +
Sbjct: 574 ALQNHWQHIGNRYIELFKSTPAEVNQ 599
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIV------DVLLVN-KNGRFSGEAFVVFAGPI 108
P ++R+RGLP+ T + +FF+ D VL VN +NGR +G+AFV+F
Sbjct: 510 PYQALIRMRGLPYATTVQQVLEFFSNTDCAVQFGEEGVLFVNRRNGRATGDAFVIFENQA 569
Query: 109 QVEFALQRDRQNMGRRYVEVFR 130
E ALQ Q++G RY+E+F+
Sbjct: 570 IGEKALQNHWQHIGNRYIELFK 591
>gi|327274272|ref|XP_003221902.1| PREDICTED: g-rich sequence factor 1-like [Anolis carolinensis]
Length = 485
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 36/223 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV--NKNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++CT++DI FF+GL I+D+ V + R +GEAFV FA P AL +
Sbjct: 254 VVRLRGLPYSCTEVDISDFFSGLSIIDITFVMDQRGRRKTGEAFVQFATPEMANQALLKH 313
Query: 118 RQNMGRRYVEVFRCKRQ-------------------------------DYYNAVASEVNY 146
++ +G RY+E+F +R D+ A+ Y
Sbjct: 314 KEEIGNRYIEIFPSQRSEIRTHNGFFRGKKMMGFPTTKQDSDSVFNEGDFNEALRPVAAY 373
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
E +++ R + + + +RGLPF +I+ FF K + +I
Sbjct: 374 ENAKEHELFKQAF-ERPRDLQESRSFPSLHFVHLRGLPFQATAQDIINFFAPLKPV--RI 430
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ GKATGEA V F + E+A AM K++ + RY+ELF
Sbjct: 431 TMEYNSSGKATGEADVHFETHEDAIAAMAKNRSHVQHRYIELF 473
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT+ D+ FFAG I + L+N++G+ G+A V V AL
Sbjct: 154 LIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLLNRDGKRRGDALVELESEQDVHNAL 213
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R+ +G+RYVEVF +D + S + ND
Sbjct: 214 EKHRRYLGQRYVEVFEIHNEDVDAIMKSLQSSSTSVTND--------------------- 252
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +I FF II D + + + TGEA+V+F + E A +A+
Sbjct: 253 -GVVRLRGLPYSCTEVDISDFFSGLSII-DITFVMDQRGRRKTGEAFVQFATPEMANQAL 310
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG+RY+E+FPS E R
Sbjct: 311 LKHKEEIGNRYIEIFPSQRSEIR 333
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V LRGLPF T DI FFA L V + + N +G+ +GEA V F A+
Sbjct: 399 PSLHFVHLRGLPFQATAQDIINFFAPLKPVRITMEYNSSGKATGEADVHFETHEDAIAAM 458
Query: 115 QRDRQNMGRRYVEVF 129
++R ++ RY+E+F
Sbjct: 459 AKNRSHVQHRYIELF 473
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSV 227
++ E +++ +GLP+S + +++ FF KI + IH DGK G+A VE S
Sbjct: 147 EEEEDVYLIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLLNRDGKRRGDALVELESE 206
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ A+ K + +G RYVE+F
Sbjct: 207 QDVHNALEKHRRYLGQRYVEVF 228
>gi|281182775|ref|NP_001162483.1| RNA-binding protein 12 [Papio anubis]
gi|164623749|gb|ABY64675.1| RNA binding motif protein 12 (predicted) [Papio anubis]
Length = 1466
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVNSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKLM 930
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|348500206|ref|XP_003437664.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oreochromis niloticus]
Length = 741
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 25/215 (11%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQV 110
P S V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F
Sbjct: 219 PVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHR 278
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
+ AL+R + +MG RY+EV++ +++ N A+ + ++
Sbjct: 279 DLALERHKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKEN 323
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSV 227
Q+ I++MRGLPF+ E++ F + D + PDG+ TG+A+V F
Sbjct: 324 QV----IIRMRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCE 379
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
E A+ A+ K K +G RY+ELF ST E ++ +R
Sbjct: 380 EYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T ++ F D + LL K +GR +G+AFV+F+ + A
Sbjct: 326 IIRMRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD-------NDFHGSPPPSRAKRY 166
L++ +Q +G+RY+E+FR + + ++ I + PP
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPSPIVPVPVLTTPPFLPAAS 445
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +D +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 446 STRD------CVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQM 499
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S ++A K K T+ RYVE+F + +E
Sbjct: 500 KSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEE 531
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 55 PPSFPV-------VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAF 101
PP P VRLRGLP+ DI +F G VD+ +++N+ GR SG+AF
Sbjct: 438 PPFLPAASSTRDCVRLRGLPYTAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAF 496
Query: 102 VVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPP 159
+ P + Q+ ++ M RYVEVF+C ++ + +N G+ SPP
Sbjct: 497 IQMKSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGGTLNRSGL-------SPP 549
Query: 160 PSR 162
P +
Sbjct: 550 PCK 552
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++M+GLP++ +I+ FF+ Y++ D + I G+ +GEA + F S E A+RA+
Sbjct: 665 LVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEIARRAV 722
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI---VDVLLVNKNGRFSGEAFVVF 104
+VR++GLP+N DI FF G + ++L N +G+ SGEA + F
Sbjct: 665 LVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITF 712
>gi|284519716|ref|NP_001165217.1| RNA-binding protein 12 [Equus caballus]
Length = 928
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA---------KRYNDKD 170
M +RYVEV + + A + ++ PPP KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPNGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F S ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDSNGQGLGQALVQFKSEDDARKS 601
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 853 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 912
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 913 LNDRPIGSRKVKL 925
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|417404143|gb|JAA48844.1| Putative rna-binding protein fusilli [Desmodus rotundus]
Length = 717
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++++F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLEFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ +F G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLEFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 465
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 518
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 519 ERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|169731516|gb|ACA64888.1| RNA binding motif protein 12 (predicted) [Callicebus moloch]
Length = 1465
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 856 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 916 LNDRPIGSRKVKLM 929
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|431894345|gb|ELK04145.1| RNA-binding protein 12 [Pteropus alecto]
Length = 899
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + T++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVSSTKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA--KRAM 234
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A A + A
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALCRNAQCRNARYRNAQ 604
Query: 235 CKD 237
C++
Sbjct: 605 CRN 607
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 824 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 883
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 884 LNDRPIGSRKVKL 896
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|351702538|gb|EHB05457.1| RNA-binding protein 12 [Heterocephalus glaber]
Length = 850
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAAENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVE+ + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEISPATERQWV-AAGGHITFKQSMGPSGQSHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDTIRKRLQNFSYD-------QREMVLNPEGDVNSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 775 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 834
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 835 LNDRPIGSRKVKL 847
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANANRSGPPPS 110
>gi|296199717|ref|XP_002747276.1| PREDICTED: RNA-binding protein 12 isoform 1 [Callithrix jacchus]
Length = 1460
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVSSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 851 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 911 LNDRPIGSRKVKLM 924
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|166831595|gb|ABY90120.1| RNA binding motif protein 12 (predicted) [Callithrix jacchus]
Length = 1460
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVSSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 851 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 911 LNDRPIGSRKVKLM 924
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|344253993|gb|EGW10097.1| Epithelial splicing regulatory protein 2 [Cricetulus griseus]
Length = 697
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 228 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 287
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 288 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 328
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E+A+ A
Sbjct: 329 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAA 388
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 389 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 417
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA Q +
Sbjct: 329 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEEQAQA 387
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 388 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYATSPLLPTLTAPLLPIPFPLAGGTGRD-- 445
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +S E A
Sbjct: 446 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSSERA 501
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 502 LAAAQRCHKKV-MKERYVEVVPCSTEEMSR 530
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F
Sbjct: 218 SKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFED 277
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 278 SEQRDLALQRHKHHMGVRYIEVYKATGEE 306
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 447 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSSERALAAA 505
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 506 QRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGM-------SPPPCK 548
>gi|71998567|ref|NP_495960.2| Protein SYM-2 [Caenorhabditis elegans]
gi|74966269|sp|Q22708.3|SYM2_CAEEL RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
gi|29165341|gb|AAO65265.1| putative RNA binding protein SYM-2 [Caenorhabditis elegans]
gi|33300449|emb|CAA93887.2| Protein SYM-2 [Caenorhabditis elegans]
Length = 618
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 24/206 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V R RGLP+ +D + +FFAGLDIV L ++ GR +GE V F+ + AL+R
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR 241
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R + RY+EV++ ++ + GS + A + + +
Sbjct: 242 HRNFLLSRYIEVYKAGLDEFMHVAT--------------GSS--TEAMEFVSANAI---- 281
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLP+ ++I FF+ K+ DKI R DG+ TG+A+V+F + E+A++ + K
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFETEEDAQQGLLK 340
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ IG RY+ELF ST E ++ R
Sbjct: 341 HRQVIGQRYIELFKSTAAEVQQVVKR 366
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+RGLP++CTD I FF L + D +L +GR +G+AFV F + L +
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ +G+RY+E+F+ + A+EV N + SP + A ++ + +
Sbjct: 342 RQVIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVANAVEAPEEKK---KDC 390
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRA-- 233
+++RGLP+ IV F D+ + +H+ G +GEA+++ ++ E+A A
Sbjct: 391 VRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMIN-EQAASACA 449
Query: 234 --MCKDKMTIG--SRYVELFPSTPDE 255
+ + M++G RY+E+F ++ +E
Sbjct: 450 AGVHNNFMSVGKKKRYIEVFQASAEE 475
>gi|354484335|ref|XP_003504344.1| PREDICTED: epithelial splicing regulatory protein 2 [Cricetulus
griseus]
Length = 707
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 238 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 297
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 298 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 338
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E+A+ A
Sbjct: 339 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAA 398
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 399 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 427
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA Q +
Sbjct: 339 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEEQAQA 397
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 398 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYATSPLLPTLTAPLLPIPFPLAGGTGRD-- 455
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +S E A
Sbjct: 456 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSSERA 511
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 512 LAAAQRCHKKV-MKERYVEVVPCSTEEMSR 540
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F
Sbjct: 228 SKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFED 287
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 288 SEQRDLALQRHKHHMGVRYIEVYKATGEE 316
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 457 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSSERALAAA 515
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 516 QRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGM-------SPPPCK 558
>gi|390333349|ref|XP_003723691.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Strongylocentrotus purpuratus]
Length = 720
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 24/213 (11%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEF 112
P V+ RGLP+ +D D+ +FF GL+I L +N +GR +GE V F Q +
Sbjct: 217 PDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMVHFESSEQRDM 276
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
ALQR + N+G+RYVEVF+ ++ A A + +D
Sbjct: 277 ALQRHKHNLGKRYVEVFKATGDEFIRVAAGT----------------SKEATLFLARD-- 318
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEE 229
E I++MRGLPF+ + ++V FF + E+ I + +GK TG+A+V F S +
Sbjct: 319 EGHIIVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDA 378
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
+A+ K + +G+RY+E+F ST E ++ SR
Sbjct: 379 VSKALSKHREYLGNRYIEIFRSTTAEVQQVLSR 411
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFF------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF ++ D+ FF AG + + + KNG+ +G+AFV+FA V A
Sbjct: 323 IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAVSKA 382
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGS------PPPSRAKRYN 167
L + R+ +G RY+E+FR + V S V E I + P P A +
Sbjct: 383 LSKHREYLGNRYIEIFRSTTAEV-QQVLSRVQSEPIMADIPQQQVMPPMIPIPIHAMPPH 441
Query: 168 DKDQMEHT------------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
Q + ++MRGLP++ +I+ F + I +H+
Sbjct: 442 HPHQPPPPPHPHFITAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMVLNLQ 501
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMT-IGSRYVELFPSTPDEAR 257
GK GEA+++ S E A A M + RYVE+F + +E +
Sbjct: 502 GKPNGEAFIQMTSAERACLAAQTCHMKYMRERYVEVFQCSGEEMQ 546
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
Y+ D + +K RGLP+ ++ +FFK I + + G+ GE V F
Sbjct: 210 YDKTDSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMVHFE 269
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAES 261
S E+ A+ + K +G RYVE+F +T DE R +
Sbjct: 270 SSEQRDMALQRHKHNLGKRYVEVFKATGDEFIRVAA 305
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFA---------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
+R+RGLP+N + DI F G+ +V +N G+ +GEAF+ +
Sbjct: 464 IRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMV----LNLQGKPNGEAFIQMTSAERAC 519
Query: 112 FALQR-DRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
A Q + M RYVEVF+C ++ + S + E
Sbjct: 520 LAAQTCHMKYMRERYVEVFQCSGEEMQMVLTSGMRNE 556
>gi|426391523|ref|XP_004062122.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Gorilla
gorilla gorilla]
Length = 1474
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 314 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 373
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 374 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 432
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 433 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 492
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 493 KAALCRHKQYMGNRFIQVHPIT 514
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 440 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 499
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 500 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 552
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 553 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 612
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 613 HRKKLNGREAFVHVVTLEDMREIE 636
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 865 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 924
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 925 LNDRPIGSRKVKLM 938
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|410953920|ref|XP_003983616.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Felis catus]
Length = 1482
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 873 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 932
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 933 LNDRPIGSRKVKLM 946
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|345495521|ref|XP_001604031.2| PREDICTED: RNA-binding protein fusilli-like [Nasonia vitripennis]
Length = 817
Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats.
Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 28/212 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 251 VVRARGLPWQSSDQDVAKFFRGLNVAKGGVALCLSAQGRRNGEALVRFVSKEHRDMALKR 310
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++ +RY+EV++ +D+ V+ G + + H SR +
Sbjct: 311 HKHHIDQRYIEVYKALGEDF-------VSVAGGTNGEAHAFL--SRGAQV---------- 351
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF K +++ ED + + DG+ATG+A+V F E+A
Sbjct: 352 IVRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDA 411
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
+A+ K + IGSRY+ELF ST E ++ +R
Sbjct: 412 AKALSKHRDCIGSRYIELFRSTTAEVQQVLNR 443
Score = 70.5 bits (171), Expect = 7e-10, Method: Composition-based stats.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 22/214 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++CT + +FF LD D VL V K +GR +G+AFV+FA
Sbjct: 352 IVRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDA 411
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R +G RY+E+FR + + + + PP + +
Sbjct: 412 AKALSKHRDCIGSRYIELFRSTTAEVQQVLNRVSDIKPFERTIMQPLPPLPLPQHFITSG 471
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY-KIIEDK-IHIACRPDGKATGEAYVEFVSVE 228
+ + +++RGLP+ I++F ++ K IE + +H+ G+ +GEA+++ S
Sbjct: 472 TRK--DCVRLRGLPYEALVEHILEFMGEHSKNIEYQGVHMVFNAQGQPSGEAFIQMNS-- 527
Query: 229 EAKRAMCKDK-----MTIG--SRYVELFPSTPDE 255
EA +C + M G RY+E+F + ++
Sbjct: 528 EAAAYVCASQRHHRYMIYGKKQRYIEVFQCSGED 561
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++ +++ RGLP+ ++ +FF+ + + + + G+ GEA V FVS E
Sbjct: 244 EKVDSNCVVRARGLPWQSSDQDVAKFFRGLNVAKGGVALCLSAQGRRNGEALVRFVSKEH 303
Query: 230 AKRAMCKDKMTIGSRYVELFPS 251
A+ + K I RY+E++ +
Sbjct: 304 RDMALKRHKHHIDQRYIEVYKA 325
>gi|348564119|ref|XP_003467853.1| PREDICTED: RNA-binding protein 12-like [Cavia porcellus]
Length = 1467
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAVENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVGPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDTIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 858 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 917
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 918 LNDRPIGSRKVKLM 931
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANANRSGPPPS 110
>gi|332248945|ref|XP_003273625.1| PREDICTED: RNA-binding protein 12-like isoform 3 [Nomascus
leucogenys]
Length = 1466
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKLM 930
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|341896441|gb|EGT52376.1| hypothetical protein CAEBREN_32196, partial [Caenorhabditis
brenneri]
Length = 616
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 24/206 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V R RGLP+ +D + +FFAGLDIV L ++ GR +GE V FA + AL+R
Sbjct: 184 VCRARGLPWQASDQHVAQFFAGLDIVPCGIALCLSSEGRRNGEVLVQFASQESRDLALKR 243
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R + RY+EV++ ++ + GS + A + + +
Sbjct: 244 HRNFLLSRYIEVYKAGLDEFMHVAT--------------GSS--TEAMEFVSANAV---- 283
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLP+ ++I FF+ K+ E KI R DG+ TG+A+V+F + E+A++ + K
Sbjct: 284 IVRMRGLPYDCSDNQIRAFFEPLKLTE-KILFITRTDGRPTGDAFVQFETEEDAQKGLLK 342
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ IG RY+ELF ST E ++ R
Sbjct: 343 HRHIIGQRYIELFKSTAAEVQQVVKR 368
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 20/205 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+RGLP++C+D I FF L + + +L +GR +G+AFV F + L +
Sbjct: 284 IVRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 343
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R +G+RY+E+F+ + A+EV N + +P + A D+ + +
Sbjct: 344 RHIIGQRYIELFK--------STAAEVQQVVKRCNLINSNPAVANAIETPDEKK---KDC 392
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVE---EAKR 232
+++RGLP+ IV F +Y + +H+ G +GEA+++ +S +
Sbjct: 393 VRLRGLPYEATVQHIVTFLGEYSSMVKFQGVHMVYNNQGHPSGEAFIQMISEQAAAATAA 452
Query: 233 AMCKDKMTIG--SRYVELFPSTPDE 255
+ + M +G RY+E+F ST +E
Sbjct: 453 GVHNNFMCVGKKKRYIEVFQSTAEE 477
>gi|391341907|ref|XP_003745268.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Metaseiulus occidentalis]
Length = 503
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 39/200 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN----------KNGRFSGEAFVVFAGPIQ 109
+VRLRG+P++ T+ D+ F DV ++N ++GR SGEA+V
Sbjct: 9 IVRLRGMPWSSTNDDVLNFLGS----DVHVLNGKDGIHFTYTRDGRASGEAYVELESEPD 64
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE AL++D +NMG RY+EVFR KR + + + N
Sbjct: 65 VENALKKDNENMGNRYIEVFRAKRAEMEWCM---------------------KKSSSNTL 103
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+ I+++RG+PF K EI FF +I+ + I I +G+ G+AYV+F S E
Sbjct: 104 DEG----IVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDFNGRTAGDAYVQFASKEA 159
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A++A+ K K IG RY+E+F
Sbjct: 160 AEKALEKHKERIGHRYIEIF 179
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 47/235 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRG+PF C+ +I FF+GL+IV V+ V+ NGR +G+A+V FA E AL++
Sbjct: 107 IVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDFNGRTAGDAYVQFASKEAAEKALEK 166
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYE-------------------------GIYD 151
++ +G RY+E+F+ + +++ +++ G YD
Sbjct: 167 HKERIGHRYIEIFKSSLSEMESSLHAQLRSFGGGFGGSGGGGRNFGGAAPQRGGRPGPYD 226
Query: 152 NDFHGSPPPSRAKRYND-----------------KDQMEHTEILKMRGLPFSVKKSEIVQ 194
PPP R + Y+ + MRG+P+ S++
Sbjct: 227 RMMGRGPPPRRDEGYSTGYDDYGYGGRRAGKSSGASYSGQGHFVHMRGIPYKATDSDVYD 286
Query: 195 FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
FF + + + G+ +GE VEF S +A+ AM K+ +G+RYVELF
Sbjct: 287 FFAPLRPV--SVQFIYEAGGRPSGECDVEFSSHRDAQDAMAKNNAHMGTRYVELF 339
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Query: 40 ASGFQPYGYGG---GFPPPPSFP----VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-N 91
++G+ YGYGG G S+ V +RG+P+ TD D+ FFA L V V +
Sbjct: 242 STGYDDYGYGGRRAGKSSGASYSGQGHFVHMRGIPYKATDSDVYDFFAPLRPVSVQFIYE 301
Query: 92 KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF-------------RCKRQDYYN 138
GR SGE V F+ + A+ ++ +MG RYVE+F + +Y++
Sbjct: 302 AGGRPSGECDVEFSSHRDAQDAMAKNNAHMGTRYVELFLKSNPGSMSKGHGNGQGHNYFS 361
Query: 139 AVASEVNYEGIYDNDFHGSPPPS----RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQ 194
E Y G S R+ R N + MRGLP+ + ++ Q
Sbjct: 362 NEYDEYEYGGGGGGGGGNSGGGGSIAFRSSR-NGGFGPSGGHFVHMRGLPYKACEDDVFQ 420
Query: 195 FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
FF I + G+ +GE VEF S +A AM ++ +G+RYVELF
Sbjct: 421 FFD--PIRPASVRFTFDATGRPSGECDVEFASHRDAAEAMERNNAHMGNRYVELF 473
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFF-KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEE 229
E I+++RG+P+S +++ F D ++ +D IH DG+A+GEAYVE S +
Sbjct: 5 EADTIVRLRGMPWSSTNDDVLNFLGSDVHVLNGKDGIHFTYTRDGRASGEAYVELESEPD 64
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
+ A+ KD +G+RY+E+F A+RAE
Sbjct: 65 VENALKKDNENMGNRYIEVF-----RAKRAE 90
>gi|72092573|ref|XP_792820.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Strongylocentrotus purpuratus]
Length = 752
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 24/213 (11%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEF 112
P V+ RGLP+ +D D+ +FF GL+I L +N +GR +GE V F Q +
Sbjct: 217 PDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMVHFESSEQRDM 276
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
ALQR + N+G+RYVEVF+ ++ A A + +D
Sbjct: 277 ALQRHKHNLGKRYVEVFKATGDEFIRVAAGT----------------SKEATLFLARD-- 318
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEE 229
E I++MRGLPF+ + ++V FF + E+ I + +GK TG+A+V F S +
Sbjct: 319 EGHIIVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDA 378
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
+A+ K + +G+RY+E+F ST E ++ SR
Sbjct: 379 VSKALSKHREYLGNRYIEIFRSTTAEVQQVLSR 411
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFF------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF ++ D+ FF AG + + + KNG+ +G+AFV+FA V A
Sbjct: 323 IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAVSKA 382
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGS------PPPSRAKRYN 167
L + R+ +G RY+E+FR + V S V E I + P P A +
Sbjct: 383 LSKHREYLGNRYIEIFRSTTAEV-QQVLSRVQSEPIMADIPQQQVMPPMIPIPIHAMPPH 441
Query: 168 DKDQMEHT------------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
Q + ++MRGLP++ +I+ F + I +H+
Sbjct: 442 HPHQPPPPPHPHFITAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMVLNLQ 501
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMT-IGSRYVELFPSTPDEAR 257
GK GEA+++ S E A A M + RYVE+F + +E +
Sbjct: 502 GKPNGEAFIQMTSAERACLAAQTCHMKYMRERYVEVFQCSGEEMQ 546
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
Y+ D + +K RGLP+ ++ +FFK I + + G+ GE V F
Sbjct: 210 YDKTDSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMVHFE 269
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAES 261
S E+ A+ + K +G RYVE+F +T DE R +
Sbjct: 270 SSEQRDMALQRHKHNLGKRYVEVFKATGDEFIRVAA 305
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFA---------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
+R+RGLP+N + DI F G+ +V +N G+ +GEAF+ +
Sbjct: 464 IRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMV----LNLQGKPNGEAFIQMTSAERAC 519
Query: 112 FALQR-DRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
A Q + M RYVEVF+C ++ + S + E
Sbjct: 520 LAAQTCHMKYMRERYVEVFQCSGEEMQMVLTSGMRNE 556
>gi|242007190|ref|XP_002424425.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
gi|212507825|gb|EEB11687.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
Length = 412
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 29/202 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
V+++RGLP++ TD +I KFF + + +++ + GR SGEA+V +E AL
Sbjct: 10 VIKMRGLPWSTTDEEILKFFNNCKVKNGKEGVHIIMTREGRPSGEAYVEMETDQDIEEAL 69
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
++DR MG RY+EVF+ KR + + S N E D+
Sbjct: 70 KKDRDYMGTRYMEVFKSKRSEMDWVIKRSGSNLETALDDG-------------------- 109
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+F + + A++A
Sbjct: 110 ---CVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPMDSRGRSTGEAYVQFKNKDIAEKA 166
Query: 234 MCKDKMTIGSRYVELFPSTPDE 255
+ K K I RY+E+F S+ E
Sbjct: 167 LLKHKEKIAHRYIEIFRSSLGE 188
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF K ++ FF+ +I I + DG+ +GEA VEF + ++A AM K+
Sbjct: 304 IHMRGLPFRATKQDVADFFR--PVIPLSIDLLTEDDGRPSGEADVEFRTHDDAVLAMSKN 361
Query: 238 KMTIGSRYVELF-PSTP 253
K + RY+ELF STP
Sbjct: 362 KNHMQHRYIELFLNSTP 378
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFA 113
P S + +RGLPF T D+ FF + + + LL +GR SGEA V F A
Sbjct: 298 PSSAHCIHMRGLPFRATKQDVADFFRPVIPLSIDLLTEDDGRPSGEADVEFRTHDDAVLA 357
Query: 114 LQRDRQNMGRRYVEVF 129
+ +++ +M RY+E+F
Sbjct: 358 MSKNKNHMQHRYIELF 373
>gi|224064269|ref|XP_002191895.1| PREDICTED: epithelial splicing regulatory protein 2 [Taeniopygia
guttata]
Length = 702
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNSQGRRNGEALVRFVNSEQRDLALER 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ + +++ F + ++ + PDG+ TG+A+V F E A+ A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGSECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 30/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V + LL K +GR +G+AFV+F+ + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGSECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQM 172
L++ ++ +G+RY+E+FR + A+EV N + +P P+
Sbjct: 388 LKKHKEILGKRYIELFR--------STAAEVQQ---VLNRYMSTPLIPTLPTPIIPVIPP 436
Query: 173 EHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
+T + +++RGLP++ +I++F D I +H+ G+ +G+A+++
Sbjct: 437 PYTIATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLNQQGRPSGDAFIQ 496
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S ++A C KM + RYVE+F + +E
Sbjct: 497 MKSADKAFMVAQKCHKKM-MKDRYVEVFQCSGEE 529
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+ E+
Sbjct: 220 ETVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNSQGRRNGEALVRFVNSEQ 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 280 RDLALERHKHHMGSRYIEVYKATGEE 305
>gi|291390369|ref|XP_002711679.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oryctolagus cuniculus]
Length = 719
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 250 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 309
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 310 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 350
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 351 ILRLRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 410
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 411 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 439
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ F G D + + + + +GR +G+AF +FA +
Sbjct: 351 ILRLRGLPFSAGPTDVLSFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 409
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + + P P +D
Sbjct: 410 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSSLLPTLTAPLLPLPFPLAPGTGRD-- 467
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 468 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERA 523
Query: 231 KRAMCKD-KMTIGSRYVELFPSTPDEARR 258
A + K + RYVE+ P + +E R
Sbjct: 524 LAAAQRSHKKVMKERYVEVVPCSTEEMSR 552
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 240 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 299
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 300 SEQRDLALQRHKHHMGVRYIEVYKATGEE 328
>gi|281427145|ref|NP_001094360.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 479
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 108/232 (46%), Gaps = 38/232 (16%)
Query: 54 PPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQ 109
P P+ VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P
Sbjct: 242 PTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEM 301
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EV 144
AL + R+ +G RY+E+F +R + V S EV
Sbjct: 302 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMVSSPTTKYITEPEVVFEEHEV 361
Query: 145 NYEGIYDNDFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFK 197
N + F K +DK + + MRGLPF +I+ FF
Sbjct: 362 NEDARPMTAFESEKEIELPKEMSDKLAEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFA 421
Query: 198 DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
K + +I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 422 PLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P+ +
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPTPALSDG--------- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 143 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 202
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 203 QDVQKALEKHRMYMGQRYVEVY 224
>gi|354495968|ref|XP_003510100.1| PREDICTED: G-rich sequence factor 1-like [Cricetulus griseus]
Length = 457
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 228 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 287
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 288 REEIGNRYIEIFPSRRNEVRTHVGSHKAKKMVSSPTAKYITEPEVVFEEHEVNEDIRPMT 347
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D M + MRGLPF +I+ FF K + +
Sbjct: 348 AFESDKEIELPKEMSEKLPETVDFGSMPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 405
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 406 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 449
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 128 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 187
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S H P M +
Sbjct: 188 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LHVKSSP-----------MVN 225
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R + TGEAYV+F E A +A+
Sbjct: 226 DGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYR-GRRKTGEAYVQFEEPEMANQAL 284
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 285 LKHREEIGNRYIEIFPSRRNEVR 307
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 375 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 434
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 435 LKDRSHVQHRYIELF 449
>gi|51467948|ref|NP_001003856.1| RNA-binding protein 12 [Danio rerio]
gi|31324618|gb|AAP48571.1| swan [Danio rerio]
gi|190336635|gb|AAI62473.1| RNA binding motif protein 12 [Danio rerio]
gi|190337822|gb|AAI62102.1| RNA binding motif protein 12 [Danio rerio]
Length = 876
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L GLPF+ + +I FF GL I + L+ N GR SG A V F P + AL+R+
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAG 363
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFH-----GSPPPSRAKRYNDKDQMEH 174
+G+RY+EV + + +V G +++ H SP PS +R + +
Sbjct: 364 MIGQRYIEVSPATERQWRESVGHS-KAGGDSEHNRHRRRSANSPTPSSGERARSRSPHKL 422
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ ++GLP+ + +I +FFK+ I+ED I+IA P+G+ATGE +VEF + + K A+
Sbjct: 423 DYCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAAL 482
Query: 235 CKDKMTIGSRYVELFPST 252
+GSR++++ P T
Sbjct: 483 GCHMQYMGSRFIQVHPIT 500
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP+ + I +FF LDIV+ + NGR +GE FV F + + AL
Sbjct: 426 VYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGCH 485
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
Q MG R+++V +++ Y + + GS ++ K I
Sbjct: 486 MQYMGSRFIQVHPITKKNMYEKIDA-------IRKRMQGSQGDQKSSSGGGKSAKSCAHI 538
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+P++V K ++ F ++ E+ + + +G G+A V+F S E+A +A
Sbjct: 539 TN---IPYNVTKKDVRLFLDGIELFEESLKVLVDSNGNGLGQAIVQFKSDEDALKAERLH 595
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+ + R + T D+ + E
Sbjct: 596 RQKLNGRDAFVHLVTFDQMKEVE 618
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + GLPFSV + EI FF I + I + G+ +G A V+F S E+ A+ ++
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHGLGI--ESIRLLKDNLGRNSGRALVKFYSPHESFEALKRN 361
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSR 264
IG RY+E+ P+T + R + S+
Sbjct: 362 AGMIGQRYIEVSPATERQWRESVGHSK 388
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA-MC 235
I+K++ +PF+V EI+ FF Y+++ + + G TGEA V F S +EA A M
Sbjct: 801 IVKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAAVMD 860
Query: 236 KDKMTIGSRYVEL 248
+ IG+R V++
Sbjct: 861 LNDRPIGARKVKI 873
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL+GLP +DI FF+GL I D V +V G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV---GGEHGEAFIVFATDEDARLGMMRT 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV 140
++ V + + + N +
Sbjct: 61 GGSIKGSKVSLLLSSKTEMQNMI 83
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+I V L S+ E + SR+
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSRR 88
>gi|403281161|ref|XP_003932066.1| PREDICTED: RNA-binding protein 12 [Saimiri boliviensis boliviensis]
Length = 1465
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGPAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 605 HRKKLNGREAFVHVVTLEDMREIE 628
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 856 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V+L
Sbjct: 916 LNDRPIGSRKVKLM 929
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>gi|156401541|ref|XP_001639349.1| predicted protein [Nematostella vectensis]
gi|156226477|gb|EDO47286.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 26/208 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D D+ FF GL+I +N GR +GEAF+ F + AL+R
Sbjct: 12 VLRARGLPWQASDQDVANFFRGLNIPRGGIAFCLNMQGRRNGEAFIRFENGDHRDLALRR 71
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV++ QD+ V G+ S A + +
Sbjct: 72 HKMHLGTRYIEVYKASAQDFLRIV------RGM-----------SIAANFVSTNA---EV 111
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPFS K +++V+FF D + E I + +GKATG+A+V F + E + A
Sbjct: 112 IIRMRGLPFSTKAADVVRFFGDDVPVYRGEGGILMVRGRNGKATGDAFVLFETEEHGRAA 171
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAES 261
+ K + +GSRYVELF S+ E ++ S
Sbjct: 172 LKKHREVLGSRYVELFRSSQSEVQQVLS 199
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 25/216 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV------DVLLV-NKNGRFSGEAFVVFAGPIQVEF 112
++R+RGLPF+ D+ +FF G D+ +L+V +NG+ +G+AFV+F
Sbjct: 112 IIRMRGLPFSTKAADVVRFF-GDDVPVYRGEGGILMVRGRNGKATGDAFVLFETEEHGRA 170
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE------GIYDNDFHGSPP------- 159
AL++ R+ +G RYVE+FR + + ++S + + N PP
Sbjct: 171 ALKKHREVLGSRYVELFRSSQSEVQQVLSSLSLFMMGVPPLAMLPNPLPQHPPFHPPMFL 230
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKAT 217
P Y + L++RGLPFS +++ F K++ + +H+ G+ +
Sbjct: 231 PGPVP-YAANGGSNAKDCLRLRGLPFSATVQDVLDFLKEHAAYVAPGGVHMVYNTQGRPS 289
Query: 218 GEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252
G+AYV+ +S + A A + K +G RY+E+FP +
Sbjct: 290 GDAYVQLLSPDFAAAAANELHKHHMGERYIEVFPCS 325
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 28 MEPNPY-----FAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFF--- 79
M PNP F G PY GG + +RLRGLPF+ T D+ F
Sbjct: 213 MLPNPLPQHPPFHPPMFLPGPVPYAANGG---SNAKDCLRLRGLPFSATVQDVLDFLKEH 269
Query: 80 ------AGLDIVDVLLVNKNGRFSGEAFVVFAGP-IQVEFALQRDRQNMGRRYVEVFRCK 132
G+ +V N GR SG+A+V P A + + +MG RY+EVF C
Sbjct: 270 AAYVAPGGVHMV----YNTQGRPSGDAYVQLLSPDFAAAAANELHKHHMGERYIEVFPCS 325
Query: 133 RQDYYNAVASEV 144
D +AS
Sbjct: 326 NSDISAVIASST 337
>gi|47217849|emb|CAG02342.1| unnamed protein product [Tetraodon nigroviridis]
Length = 776
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL I L +N GR +GEA V F + AL+R
Sbjct: 256 VIRARGLPWQSSDQDIARFFKGLSIARGGVALCLNAQGRRNGEALVRFINSEHRDLALER 315
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 316 HKHHMGNRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 356
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ F + D + PDG+ TG+A+V F E A+ A
Sbjct: 357 IIRMRGLPFTATPQEVLSFLGPESPVTDGSEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 416
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 417 LKKHKQILGKRYIELFRSTAAEVQQVLNR 445
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T ++ F D + LL K +GR +G+AFV+F+ + A
Sbjct: 357 IIRMRGLPFTATPQEVLSFLGPESPVTDGSEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 416
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ +Q +G+RY+E+FR + Q N S + + P PP
Sbjct: 417 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPSPMVSVPVLSTPPFLPTAS 476
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+D +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 477 TARD------CVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQM 530
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S ++A K K T+ RYVE+F + +E
Sbjct: 531 KSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEE 562
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 55 PPSFPV-------VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAF 101
PP P VRLRGLP+ DI +F G VD+ +++N+ GR SG+AF
Sbjct: 469 PPFLPTASTARDCVRLRGLPYTAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAF 527
Query: 102 VVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPP 159
+ P + Q+ ++ M RYVEVF+C ++ + +N G+ SPP
Sbjct: 528 IQMKSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGGTLNRSGL-------SPP 580
Query: 160 PSR 162
P +
Sbjct: 581 PCK 583
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++ +++ RGLP+ +I +FFK I + + G+ GEA V F++ E
Sbjct: 251 VDNETVIRARGLPWQSSDQDIARFFKGLSIARGGVALCLNAQGRRNGEALVRFINSEHRD 310
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T +E
Sbjct: 311 LALERHKHHMGNRYIEVYKATGEE 334
>gi|449685013|ref|XP_002164898.2| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 365
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 53/253 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF+CT DI +FF+GLDI + +N++GR SG+A+V F E AL +
Sbjct: 31 IVRLRGLPFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYVEFVTQQDAENALLK 90
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYE---------GIYD--NDFHG--------- 156
++ +G RY+E+F+ + D V + + G YD +F+G
Sbjct: 91 HKEKIGHRYIEIFQSSKDDIKYVVGTRSDDHRPSLMSIRPGPYDRPQNFNGPRRGRGGVQ 150
Query: 157 ------SPPPSRAKRYNDKDQMEHT--------------------EILKMRGLPFSVKKS 190
+ PS + + M + MRGLPF S
Sbjct: 151 LGPSGFNTAPSYSGDFGRNRSMNRGGRSGGMGMSKTPTVQSSKTGHSVHMRGLPFEASVS 210
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF- 249
+IV FF ++ + + P+G+ GE V+F + +A+ AM KDK +G RY+ELF
Sbjct: 211 DIVTFFSPLNPVD--VRLMFEPNGRPKGECDVDFATHSDAESAMLKDKQNMGHRYIELFL 268
Query: 250 PSTPDEA-RRAES 261
S+P+ + R+ES
Sbjct: 269 KSSPNASGWRSES 281
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 26/137 (18%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG+RY+EV K+ + V N D I+++
Sbjct: 1 MGKRYIEVKEAKQSEMEWVV--------------------------NRMDNSRSEAIVRL 34
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF K +I +FF I I I DG+A+G+AYVEFV+ ++A+ A+ K K
Sbjct: 35 RGLPFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYVEFVTQQDAENALLKHKEK 94
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ D+ +
Sbjct: 95 IGHRYIEIFQSSKDDIK 111
>gi|41351452|gb|AAH65688.1| Rbm35b protein [Danio rerio]
Length = 711
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++QM
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQM---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ F + D + PDG+ TG+A+V F E A+ A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F D + LL K +GR +G+AFV+FA + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYN-----AVASEVNYEGIYDNDFHGSPPPSRAKR 165
L++ +Q +G+RY+E+FR + Q N + S + P
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPFITT 445
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
N +D +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 446 GNTRD------CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQ 499
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S + A C KM + RYVE+F + +E
Sbjct: 500 MKSADRAFMVAQKCHKKM-MKDRYVEVFQCSTEE 532
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ + ++ +++ RGLP+ +I +FFK I + + + G+ GEA V F++
Sbjct: 215 SKTESVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIN 274
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E A+ + K +GSRY+E++ +T +E
Sbjct: 275 SEHRDMALDRHKHHMGSRYIEVYKATGEE 303
>gi|149033731|gb|EDL88527.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 281
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 108/232 (46%), Gaps = 38/232 (16%)
Query: 54 PPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQ 109
P P+ VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P
Sbjct: 44 PTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEM 103
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EV 144
AL + R+ +G RY+E+F +R + V S EV
Sbjct: 104 ANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMVSSPTTKYITEPEVVFEEHEV 163
Query: 145 NYEGIYDNDFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFK 197
N + F K +DK + + MRGLPF +I+ FF
Sbjct: 164 NEDARPMTAFESEKEIELPKEMSDKLAEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFA 223
Query: 198 DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
K + +I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 224 PLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 273
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 23/148 (15%)
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
V+ AL++ R MG+RYVEV+ +D + S P P+ +
Sbjct: 7 VQKALEKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPTPALSDG---- 51
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E
Sbjct: 52 -------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEM 103
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A +A+ K + IG+RY+E+FPS +E R
Sbjct: 104 ANQALLKHREEIGNRYIEIFPSRRNEVR 131
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F PS V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 195 FGAVPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDA 254
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 255 VAAMLKDRSHVQHRYIELF 273
>gi|157129243|ref|XP_001655329.1| hypothetical protein AaeL_AAEL011420 [Aedes aegypti]
gi|108872264|gb|EAT36489.1| AAEL011420-PA [Aedes aegypti]
Length = 894
Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats.
Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI +FF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 267 IVRARGLPWQSSDQDIARFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMALKR 326
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ AVA + E A+ + K
Sbjct: 327 HKHHIGNRYIEVYRATGEDFL-AVAGGASNE---------------AQAFLSKGAQV--- 367
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF + +++ D I +PDG+ATG+A+V F +A
Sbjct: 368 IIRMRGLPYDCTAKQVLEFFANGDNNCTVLDGADGILFVKKPDGRATGDAFVLFSQETDA 427
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + +IG RY+ELF ST E ++ +RS
Sbjct: 428 PKALSKHRESIGQRYIELFRSTTAEVQQVLNRS 460
Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 30/221 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + +FFA LD D +L V K +GR +G+AFV+F+
Sbjct: 368 IIRMRGLPYDCTAKQVLEFFANGDNNCTVLDGADGILFVKKPDGRATGDAFVLFSQETDA 427
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R+++G+RY+E+FR A +V + + PP A +
Sbjct: 428 PKALSKHRESIGQRYIELFRST-----TAEVQQVLNRSMDPKTYEPPQPPLIAALPPVQL 482
Query: 171 QMEHTEIL---------KMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGE 219
+ ++ ++RGLP+ K I+ F +D+ I+ +H+ G+ GE
Sbjct: 483 PLLPQHVITSGTEKNCIRLRGLPYEAKVEHILHFLEDFAKNIVYQGVHLVYNAQGQFNGE 542
Query: 220 AYVEFVSVEEAKRAMCK---DKMTIG--SRYVELFPSTPDE 255
A+++ S A ++ + M G RY+E+F + D+
Sbjct: 543 AFIQMDSETAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGDD 583
Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ T I++ RGLP+ +I +FF+ + + + + P G+ GEA V FVS E
Sbjct: 260 DEIDGTCIVRARGLPWQSSDQDIARFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEH 319
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ +T ++
Sbjct: 320 RDMALKRHKHHIGNRYIEVYRATGED 345
>gi|410983807|ref|XP_003998228.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Felis catus]
Length = 717
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 408 ALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 465
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 518
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 519 ERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|40548306|ref|NP_954966.1| epithelial splicing regulatory protein 2 [Danio rerio]
gi|28279592|gb|AAH45439.1| RNA binding motif protein 35B [Danio rerio]
Length = 736
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++QM
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQM---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ F + D + PDG+ TG+A+V F E A+ A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F D + LL K +GR +G+AFV+FA + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYN-----AVASEVNYEGIYDNDFHGSPPPSRAKR 165
L++ +Q +G+RY+E+FR + Q N + S + P
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPLITT 445
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
N +D +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 446 GNTRD------CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQ 499
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S + A C KM + RYVE+F + +E
Sbjct: 500 MKSADRAFMVAQKCHKKM-MKDRYVEVFQCSTEE 532
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ + ++ +++ RGLP+ +I +FFK I + + + G+ GEA V F++
Sbjct: 215 SKTEAVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIN 274
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E A+ + K +GSRY+E++ +T +E
Sbjct: 275 SEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++M+GLP++ +I+ FF+ Y++ D + + G+ +GEA V F S + A+RA+
Sbjct: 660 LVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAV 717
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI-VDVLLV--NKNGRFSGEAFVVF 104
PP P +VR++GLP+N DI FF G + D +LV N +G+ SGEA V F
Sbjct: 653 LPPQPG-ALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTF 707
>gi|449277356|gb|EMC85572.1| Epithelial splicing regulatory protein 2 [Columba livia]
Length = 721
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 242 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 301
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 302 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 342
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ + +++ F + ++ + PDG+ TG+A+V F E A+ A
Sbjct: 343 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 402
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 403 LKKHKEILGKRYIELFRSTAAEVQQVLNR 431
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V +L V +GR +G+AFV+F+ + A
Sbjct: 343 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 402
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQM 172
L++ ++ +G+RY+E+FR + A+EV N + +P P+
Sbjct: 403 LKKHKEILGKRYIELFR--------STAAEVQQ---VLNRYMSTPLIPTLPTPIIPVIPP 451
Query: 173 EHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
+T + +++RGLP++ +I++F D I +H+ G+ +G+A+++
Sbjct: 452 PYTIATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLNQQGRPSGDAFIQ 511
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S ++A C KM + RYVE+F + +E
Sbjct: 512 MKSADKAFMVAQKCHKKM-MKDRYVEVFQCSGEE 544
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ + ++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+
Sbjct: 232 SKSETVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVN 291
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +GSRY+E++ +T +E
Sbjct: 292 SEQRDLALERHKHHMGSRYIEVYKATGEE 320
>gi|134047877|sp|Q7ZVR8.2|ESRP2_DANRE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
Length = 736
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++QM
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQM---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ F + D + PDG+ TG+A+V F E A+ A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F D + LL K +GR +G+AFV+FA + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYN-----AVASEVNYEGIYDNDFHGSPPPSRAKR 165
L++ +Q +G+RY+E+FR + Q N + S + P
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPFITT 445
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
N +D +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 446 GNTRD------CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQ 499
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S + A C KM + RYVE+F + +E
Sbjct: 500 MKSADRAFMVAQKCHKKM-MKDRYVEVFQCSTEE 532
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ + ++ +++ RGLP+ +I +FFK I + + + G+ GEA V F++
Sbjct: 215 SKTEAVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIN 274
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E A+ + K +GSRY+E++ +T +E
Sbjct: 275 SEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++M+GLP++ +I+ FF+ Y++ D + + G+ +GEA V F S + A+RA+
Sbjct: 660 LVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAV 717
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDI-VDVLLV--NKNGRFSGEAFVVF 104
PP +VR++GLP+N DI FF G + D +LV N +G+ SGEA V F
Sbjct: 654 PPQPGALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTF 707
>gi|260819360|ref|XP_002605005.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
gi|229290334|gb|EEN61015.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
Length = 645
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 24/212 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R+RGLP+ +D DI +FF GL+I + +N GR +GEA V FA + AL R
Sbjct: 215 ILRVRGLPWQSSDQDIARFFRGLNITKGGVAVCLNPQGRRNGEALVRFASKEHRDLALLR 274
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G+RY+EV++ +D+ N + D S A+
Sbjct: 275 HKHHIGQRYIEVYKATGEDFLKVAGGNANEATAFLRD-------SAAEV----------- 316
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLP++ ++I+ FF + E I +G++TG+A+V F + A+ A
Sbjct: 317 IVRMRGLPYTATAADILNFFGQSCPVAGGEKGILFVRYANGRSTGDAFVLFETEAYAQLA 376
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ K K ++G RY+ELF ST E ++ +R +Q
Sbjct: 377 LAKHKESLGKRYIELFRSTAAEVQQVWNRYQQ 408
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 24/210 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFF------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLP+ T DI FF AG + + + NGR +G+AFV+F + A
Sbjct: 317 IVRMRGLPYTATAADILNFFGQSCPVAGGEKGILFVRYANGRSTGDAFVLFETEAYAQLA 376
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN-----DFHGSPPPSRAKRYND 168
L + ++++G+RY+E+FR + A+EV + +++ H +P
Sbjct: 377 LAKHKESLGKRYIELFR--------STAAEV--QQVWNRYQQCPLIHTTPTMIPMLPQQA 426
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVS 226
+ ++MRGLP+ +++ F +Y + + IH+ GK +G+ +++ S
Sbjct: 427 ITCGSIRDCVRMRGLPYQATHDDVLAFLGEYAVYVRDHGIHMVLNSSGKPSGDCFIQMYS 486
Query: 227 VEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
E A++A K + +G RY+E+F + DE
Sbjct: 487 PEAARQAAEKCHRQYMGDRYIEVFQCSGDE 516
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
Y + ++ IL++RGLP+ +I +FF+ I + + + P G+ GEA V F
Sbjct: 204 YQKNELIDDDTILRVRGLPWQSSDQDIARFFRGLNITKGGVAVCLNPQGRRNGEALVRFA 263
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
S E A+ + K IG RY+E++ +T ++
Sbjct: 264 SKEHRDLALLRHKHHIGQRYIEVYKATGED 293
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV-----DVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
VR+RGLP+ T D+ F + +++N +G+ SG+ F+ P A +
Sbjct: 436 VRMRGLPYQATHDDVLAFLGEYAVYVRDHGIHMVLNSSGKPSGDCFIQMYSPEAARQAAE 495
Query: 116 R-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPP 159
+ RQ MG RY+EVF+C + + + ++N GIY G PP
Sbjct: 496 KCHRQYMGDRYIEVFQCSGDEMNFVLMGGQLNKNGIYP----GYPP 537
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 51 GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI 84
G+ PPPS PV+R+RG+P+N D+ FF G +
Sbjct: 606 GYYPPPS-PVLRMRGIPYNAGVPDVVNFFGGYQV 638
>gi|410983809|ref|XP_003998229.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Felis catus]
Length = 726
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 257 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 316
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 317 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 357
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 358 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 417
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 418 LRRHKGILGKRYIELFRSTAAEVQQVLNR 446
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 358 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 416
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 417 ALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 474
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 475 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 527
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 528 ERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 559
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 247 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 306
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 307 SEQRDLALQRHKHHMGVRYIEVYKATGEE 335
>gi|194208736|ref|XP_001498922.2| PREDICTED: epithelial splicing regulatory protein 2-like [Equus
caballus]
Length = 659
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 190 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 249
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 250 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 290
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 291 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 350
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 351 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 379
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 291 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 349
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P ++
Sbjct: 350 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTVTAPLL---PIPFPLAAGTER 406
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
D +++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 407 D------CVRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLNQQGRPSGDAFIQMTSA 460
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + DE R
Sbjct: 461 ERALGAAQRCHKKV-MKERYVEVVPCSTDEMSR 492
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 180 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 239
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 240 SEQRDLALQRHKHHMGVRYIEVYKATGEE 268
>gi|329664166|ref|NP_001192614.1| epithelial splicing regulatory protein 2 [Bos taurus]
Length = 717
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 465
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 -------CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSA 518
Query: 228 EEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
E A A + K + RYVE+ P + +E R
Sbjct: 519 ERALAAAQRCHKKAMKERYVEVVPCSTEEMSR 550
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|73957227|ref|XP_851504.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Canis lupus familiaris]
Length = 717
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 408 ALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPALTAPLLP-IPFPLAAGTGRD- 465
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 518
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 519 ERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|260834915|ref|XP_002612455.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
gi|229297832|gb|EEN68464.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
Length = 411
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 32/209 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
VVR+RGLP++ T ++ F G D +K GR SGEAFV E
Sbjct: 3 VVRMRGLPWSATCEEVKNFLTSEGCKVKGGDGGIHFTFSKEGRPSGEAFVEVETSEDFEK 62
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL + Q+MG RY+EVFR K SE+ + +++ +DQ+
Sbjct: 63 ALAKHNQHMGHRYIEVFRSK--------VSEMEW----------------VVKHSGQDQV 98
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ I+++RGLPF K EI QFF +I+ + I + G++TGEA+V+F S + A++
Sbjct: 99 -NDGIVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFTSQDIAEK 157
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAES 261
A+ K K IG RY+E+F S+ +E R S
Sbjct: 158 ALGKHKEKIGHRYIEIFKSSRNEVRECMS 186
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +I QFF+ ++ K+ I PD +ATGEA VEF S ++A AM
Sbjct: 278 HFVHMRGLPFKAASEDIEQFFQ--PLVPMKVQIHYGPDKRATGEADVEFASHDDAVAAMA 335
Query: 236 KDKMTI 241
KDK +
Sbjct: 336 KDKANM 341
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+++MRGLP+S E+ F K + IH +G+ +GEA+VE + E+ ++
Sbjct: 3 VVRMRGLPWSATCEEVKNFLTSEGCKVKGGDGGIHFTFSKEGRPSGEAFVEVETSEDFEK 62
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
A+ K +G RY+E+F S E S Q
Sbjct: 63 ALAKHNQHMGHRYIEVFRSKVSEMEWVVKHSGQ 95
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF DI +FF L + V + + R +GEA V FA A+ +D+
Sbjct: 280 VHMRGLPFKAASEDIEQFFQPLVPMKVQIHYGPDKRATGEADVEFASHDDAVAAMAKDKA 339
Query: 120 NMGRRYVEVFRCKRQDYYNAVAS 142
NM R + C N + S
Sbjct: 340 NM--RKWKCLSCDNHSGINGLFS 360
>gi|326927219|ref|XP_003209790.1| PREDICTED: epithelial splicing regulatory protein 2-like [Meleagris
gallopavo]
Length = 701
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ + +++ F + ++ + PDG+ TG+A+V F E A+ A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V + LL K +GR +G+AFV+F+ + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQM 172
L++ ++ +G+RY+E+FR + A+EV N + +P P+
Sbjct: 388 LKKHKEILGKRYIELFR--------STAAEVQQ---VLNRYMSTPLIPTLPTPIIPVIPP 436
Query: 173 EHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
+T + +++RGLP++ +I+ F D I +H+ G+ +G+A+++
Sbjct: 437 PYTIATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQ 496
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S ++A C KM + RYVE+F + +E
Sbjct: 497 MKSADKAFMVAQKCHKKM-MKDRYVEVFQCSGEE 529
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+ E+
Sbjct: 220 ETVDNETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQ 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 280 RDLALERHKHHMGSRYIEVYKATGEE 305
>gi|301775691|ref|XP_002923260.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Ailuropoda melanoleuca]
gi|281349933|gb|EFB25517.1| hypothetical protein PANDA_012380 [Ailuropoda melanoleuca]
Length = 723
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 254 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 313
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 314 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 354
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 355 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 414
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 415 LRRHKGILGKRYIELFRSTAAEVQQVLNR 443
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 355 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 413
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 414 ALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 471
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 472 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 524
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 525 ERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 556
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 244 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 303
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 304 SEQRDLALQRHKHHMGVRYIEVYKATGEE 332
>gi|301768278|ref|XP_002919563.1| PREDICTED: g-rich sequence factor 1-like [Ailuropoda melanoleuca]
Length = 717
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 488 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 547
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 548 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMSSSPTAKYITEPEMVFEEHEVNEDIRPMT 607
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 608 AFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 665
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + +GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 666 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 709
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 388 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 447
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D +A+ + + SP ND
Sbjct: 448 EKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS--------SPV------VNDG----- 487
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 488 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 544
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 545 LKHREEIGNRYIEIFPSRRNEVR 567
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S ++V FF D +I E+ IH DGK G+A +E S
Sbjct: 381 EEVDDVYLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 440
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 441 QDVQKALEKHRMYMGQRYVEVY 462
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + NG+ +GEA V F
Sbjct: 631 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDA 690
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 691 VAAMLKDRSHVHHRYIELF 709
>gi|348572536|ref|XP_003472048.1| PREDICTED: epithelial splicing regulatory protein 2 [Cavia
porcellus]
Length = 719
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 250 VVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 309
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 310 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 350
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 351 ILRLRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 410
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 411 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 439
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ F G D + + + + +GR +G+AF +FA +
Sbjct: 351 ILRLRGLPFSAGPTDVLSFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 409
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 410 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPSL-TAPLLPIPFPLAAGTGRD- 467
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 468 -------CVRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLNQQGRLSGDAFIQMTSA 520
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C KM + RYVE+ P + +E R
Sbjct: 521 ERALAAAQRCHKKM-MKERYVEVVPCSTEEMSR 552
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FF+ I + + G+ GEA + F
Sbjct: 240 SKADVVDSETVVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFTD 299
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 300 REQRDLALQRHKHHMGVRYIEVYKATGEE 328
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 469 VRLRGLPYTATIEDILSFL-GEAAADIQPHGVHMVLNQQGRLSGDAFIQMTSAERALAAA 527
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 528 QRCHKKMMKERYVEVVPCSTEEMSRVLMGGTLSRSGM-------SPPPCK 570
>gi|71895579|ref|NP_001025737.1| epithelial splicing regulatory protein 2 [Gallus gallus]
gi|75571416|sp|Q5ZLR4.1|ESRP2_CHICK RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|53128733|emb|CAG31329.1| hypothetical protein RCJMB04_5c3 [Gallus gallus]
Length = 701
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ + +++ F + ++ + PDG+ TG+A+V F E A+ A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V + LL K +GR +G+AFV+F+ + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQM 172
L++ ++ +G+RY+E+FR + A+EV N + +P P+
Sbjct: 388 LKKHKEILGKRYIELFR--------STAAEVQQ---VLNRYMSTPLIPTLPTPIIPVIPP 436
Query: 173 EHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
+T + +++RGLP++ +I+ F D I +H+ G+ +G+A+++
Sbjct: 437 PYTIATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQ 496
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S ++A C KM + RYVE+F + +E
Sbjct: 497 MKSADKAFMVAQKCHKKM-MKDRYVEVFQCSGEE 529
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+ E+
Sbjct: 220 ETVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQ 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 280 RDLALERHKHHMGSRYIEVYKATGEE 305
>gi|380812104|gb|AFE77927.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
gi|380812106|gb|AFE77928.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 370 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 471
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 124 YLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 183
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 184 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 242
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ ND ++++RGLP+S + +IV FF I++ +
Sbjct: 243 --------------SPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 281
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 282 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 329
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 398 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 457
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 458 KDRSHVHHRYIELF 471
>gi|28849887|ref|NP_789808.1| epithelial splicing regulatory protein 2 [Mus musculus]
gi|81914552|sp|Q8K0G8.1|ESRP2_MOUSE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|21618665|gb|AAH31444.1| RNA binding motif protein 35b [Mus musculus]
gi|148679398|gb|EDL11345.1| RNA binding motif protein 35b [Mus musculus]
Length = 717
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRD-- 465
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +SVE A
Sbjct: 466 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 521
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C KM + RYVE+ P + +E R
Sbjct: 522 LAAAQRCHKKM-MKERYVEVVPCSTEEMSR 550
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 467 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 525
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 526 QRCHKKMMKERYVEVVPCSTEEMSRVLMGGSLSRSGL-------SPPPCK 568
>gi|426242551|ref|XP_004015136.1| PREDICTED: epithelial splicing regulatory protein 2 [Ovis aries]
Length = 591
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 122 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 181
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 182 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 222
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 223 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 282
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 283 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 311
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 223 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 281
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 282 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGSGRD- 339
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 340 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 392
Query: 228 EEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
E A A + K + RYVE+ P + +E R
Sbjct: 393 ERALAAAQRCHKKAMKERYVEVVPCSTEEMSR 424
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 112 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 171
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 172 SEQRDLALQRHKHHMGVRYIEVYKATGEE 200
>gi|432852904|ref|XP_004067443.1| PREDICTED: epithelial splicing regulatory protein 2-like [Oryzias
latipes]
Length = 695
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + AL+R
Sbjct: 182 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIDSEHRDLALER 241
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 242 HKHHMGCRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 282
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ F + D + PDG+ TG+A+V F E + A
Sbjct: 283 IIRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYVQNA 342
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 343 LKKHKQILGKRYIELFRSTAAEVQQVLNR 371
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T ++ F D + LL K +GR +G+AFV+F+ V+ A
Sbjct: 283 IIRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYVQNA 342
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP-PPSRAKRYNDKDQM 172
L++ +Q +G+RY+E+FR + + ++ I + SP P A +
Sbjct: 343 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLI--STLPASPIVPVLASQPFLPAAT 400
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ +++RGLP++ +I++F ++ I +H+ G+ +G+A+++ S + A
Sbjct: 401 STRDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQMKSADRA 460
Query: 231 KRAMCK-DKMTIGSRYVELFPSTPDE 255
K K T+ RYVE+F + +E
Sbjct: 461 FMVAQKCHKKTMKDRYVEVFQCSTEE 486
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ DI +F G VD+ +++N+ GR SG+AF+ +
Sbjct: 406 VRLRGLPYTAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVA 464
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
Q+ ++ M RYVEVF+C ++ + +N G+ SPPP +
Sbjct: 465 QKCHKKTMKDRYVEVFQCSTEEMSIVLMGGTLNRSGL-------SPPPCK 507
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++M+GLP++ +I+ FF+ Y++ D + I G+ +GEA + F S + A+RA+
Sbjct: 619 LVRMQGLPYNTGVKDILSFFQGYQLQPDAVVILYNFSGQCSGEALITFPSEDLARRAV 676
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI---VDVLLVNKNGRFSGEAFVVF 104
+VR++GLP+N DI FF G + V+L N +G+ SGEA + F
Sbjct: 619 LVRMQGLPYNTGVKDILSFFQGYQLQPDAVVILYNFSGQCSGEALITF 666
>gi|388452478|ref|NP_001253931.1| G-rich sequence factor 1 [Macaca mulatta]
gi|383417775|gb|AFH32101.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 370 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 471
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 124 YLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 183
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 184 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 242
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ ND ++++RGLP+S + +IV FF I++ +
Sbjct: 243 --------------SPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 281
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 282 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 329
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 398 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 457
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 458 KDRSHVHHRYIELF 471
>gi|148673403|gb|EDL05350.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Mus musculus]
Length = 403
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 174 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 233
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 234 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 293
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 294 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 351
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 352 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 395
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 74 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 133
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 134 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 173
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R + TGEAYV+F E A +A+
Sbjct: 174 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYR-GRRKTGEAYVQFEEPEMANQAL 230
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 231 LKHREEIGNRYIEIFPSRRNEVR 253
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
D+++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 67 DEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 126
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 127 QDVQKALEKHRMYMGQRYVEVY 148
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 321 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 380
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 381 LKDRSHVQHRYIELF 395
>gi|229485446|sp|B2RYJ8.1|ESRP2_RAT RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|187469463|gb|AAI66804.1| Rbm35b protein [Rattus norvegicus]
Length = 716
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 307 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 347
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 348 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAA 407
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 408 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G+D + + + + +GR +G+AF +FA +
Sbjct: 348 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGL-LFVRHPDGRPTGDAFALFACEELAQA 406
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 407 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRD-- 464
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +SVE A
Sbjct: 465 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 520
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 521 LAAAQRCHKKV-MKERYVEVVPCSTEEMSR 549
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F E+
Sbjct: 240 DVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQ 299
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 300 RDLALQRHKHHMGVRYIEVYKATGEE 325
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 466 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 524
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 525 QRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGL-------SPPPCK 567
>gi|157818053|ref|NP_001100893.1| epithelial splicing regulatory protein 2 [Rattus norvegicus]
gi|149038076|gb|EDL92436.1| RNA binding motif protein 35b (predicted) [Rattus norvegicus]
Length = 717
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G+D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRD-- 465
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +SVE A
Sbjct: 466 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 521
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 522 LAAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F
Sbjct: 238 SKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFED 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 467 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 525
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 526 QRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGL-------SPPPCK 568
>gi|195488502|ref|XP_002092343.1| GE14142 [Drosophila yakuba]
gi|194178444|gb|EDW92055.1| GE14142 [Drosophila yakuba]
Length = 889
Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats.
Identities = 68/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFECQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGSRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+C+ + +IG RY+ELF ST E ++ +RS
Sbjct: 441 ASKALCRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 66/254 (25%), Positives = 109/254 (42%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 440
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR + Q N NYE
Sbjct: 441 ASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEILKMRG----------LPFSVKKS 190
G + + G+ P + T+ L G LP+
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 618
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 KYRYIEVFQCSGDD 632
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + F E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFECQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IGSRY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGSRYIEVYRASGED 358
>gi|194882767|ref|XP_001975482.1| GG22342 [Drosophila erecta]
gi|190658669|gb|EDV55882.1| GG22342 [Drosophila erecta]
Length = 892
Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats.
Identities = 68/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+C+ + +IG RY+ELF ST E ++ +RS
Sbjct: 441 ASKALCRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 440
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR + Q N NYE
Sbjct: 441 ASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEIL----------KMRGLPFSVKKS 190
G + + G+ P + T+ L ++RGLP+
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 618
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 KYRYIEVFQCSGDD 632
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
>gi|215274142|sp|Q12849.3|GRSF1_HUMAN RecName: Full=G-rich sequence factor 1; Short=GRSF-1
Length = 480
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 428
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 429 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 125 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 184
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 185 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 243
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 244 --------SP------VVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 283 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 399 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 458
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 459 KDRSHVHHRYIELF 472
>gi|26337751|dbj|BAC32561.1| unnamed protein product [Mus musculus]
Length = 479
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|148596934|ref|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculus]
gi|55976518|sp|Q8C5Q4.2|GRSF1_MOUSE RecName: Full=G-rich sequence factor 1; Short=GRSF-1
gi|26336891|dbj|BAC32129.1| unnamed protein product [Mus musculus]
gi|182888413|gb|AAI60216.1| G-rich RNA sequence binding factor 1 [synthetic construct]
Length = 479
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|327276493|ref|XP_003223004.1| PREDICTED: epithelial splicing regulatory protein 2-like [Anolis
carolinensis]
Length = 714
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 230 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 289
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 290 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 330
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ F + + +K + PDG+ TG+A+V F E A+ A
Sbjct: 331 IIRMRGLPFTATPEDVLGFLGPECPVTGEKEGLLFVKYPDGRPTGDAFVLFACEEFAQNA 390
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 391 LKKHKEILGKRYIELFRSTAAEVQQVLNR 419
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V + LL K +GR +G+AFV+FA + A
Sbjct: 331 IIRMRGLPFTATPEDVLGFLGPECPVTGEKEGLLFVKYPDGRPTGDAFVLFACEEFAQNA 390
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQM 172
L++ ++ +G+RY+E+FR + A+EV N + +P P+
Sbjct: 391 LKKHKEILGKRYIELFR--------STAAEVQQ---VLNRYMSTPLIPTLPTPIIPVIPP 439
Query: 173 EHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
+T + +++RGLP++ +I++F D I +H+ G+ +G+A+++
Sbjct: 440 PYTIAAGSARDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLNQQGRLSGDAFIQ 499
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S + A C KM + RYVE+F + +E
Sbjct: 500 MKSSDRAYLVAQKCHKKM-MKDRYVEVFQCSGEE 532
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+ E+
Sbjct: 223 ETVDRETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQ 282
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 283 RDLALERHKHHMGSRYIEVYKATGEE 308
>gi|149193321|ref|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapiens]
Length = 480
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 428
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 429 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 125 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 184
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 185 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 231
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 232 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 283 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 399 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 458
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 459 KDRSHVHHRYIELF 472
>gi|193784859|dbj|BAG54012.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 230 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 289
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 290 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 349
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 350 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 407
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 408 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 451
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 104 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 163
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 164 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 210
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 211 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 261
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 262 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 309
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 378 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 437
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 438 KDRSHVHHRYIELF 451
>gi|355686618|gb|AER98119.1| epithelial splicing regulatory protein 2 [Mustela putorius furo]
Length = 650
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 182 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 241
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 242 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 282
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 283 ILRLRGLPFSAGPEDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 342
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 343 LRRHKGILGKRYIELFRSTAAEVQQVLNR 371
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 283 ILRLRGLPFSAGPEDVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 341
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 342 ALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 399
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 400 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 452
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 453 ERALAAAQGCHKKV-MKERYVEVVPCSTEEMSR 484
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 172 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 231
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 232 SEQRDLALQRHKHHMGVRYIEVYKATGEE 260
>gi|74095965|ref|NP_001027829.1| swan [Takifugu rubripes]
gi|31324616|gb|AAP48570.1| swan [Takifugu rubripes]
Length = 889
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 10/200 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L+ LPF CT++D+ FF GL + V L + GR +G+A V F P + A++R
Sbjct: 301 VLLQNLPFTCTEVDVRGFFRGLGVDAVRFLKDAQGRHTGKAMVKFFSPQESFEAVKRGGG 360
Query: 120 NMGRRYVEVFRCKRQDYY---NAVASEVNYEGIYDND------FHGSPPPSRAKRYNDKD 170
MG+R++E+ Q + N AS+ ++ G N + S +R +R +
Sbjct: 361 MMGQRFIEINPGSEQQWASINNGTASQASHSGNKSNIELQQHCRNNSGVEARDQRGRSRS 420
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ ++GLP+ K +I +FF + IIED I+IA P+G+ATGE ++EF + ++
Sbjct: 421 PHRQEFCIYLKGLPYEADKKQIKEFFNNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDH 480
Query: 231 KRAMCKDKMTIGSRYVELFP 250
K A+ +GSR++++ P
Sbjct: 481 KAALGAHMQYMGSRFIQVHP 500
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 25/197 (12%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ L+GLP+ I +FF L I++ + NGR +GE F+ F + AL
Sbjct: 428 IYLKGLPYEADKKQIKEFFNNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGAH 487
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS----EVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
Q MG R+++V R+ + + E ++ G D +P
Sbjct: 488 MQYMGSRFIQVHPVSRKGMLEKIDAIRKREASHGGGKSQDGSKNP--------------- 532
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ + +P+++ K ++ F + + ED + + G G++ + S E+A++A
Sbjct: 533 -RNCVHITNIPYNISKKDVRAFLEGVGLYEDSLKVLTDSHGNGLGQSIFQLRSEEDARKA 591
Query: 234 --MCKDKMTIGSRYVEL 248
+ + K+ +V L
Sbjct: 592 ERLHRQKLNGRDAFVHL 608
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y+++ + + G TGEA V F + EEA A+
Sbjct: 814 VVKLQNMPFTVTVDEIMDFFYGYQVVPGSVCLQFSEKGLPTGEAMVAFQNHEEATAAVLD 873
Query: 237 -DKMTIGSRYVEL 248
+ IG+R V++
Sbjct: 874 LNDRPIGARKVKI 886
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL+GLP +DI FF+GL I D V +V G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV---GGEHGEAFIVFATDEDARLGMMRT 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV 140
++ V + + + ++ +
Sbjct: 61 GGSIKGSKVSLLLSSKTEMHSMI 83
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
++ LPF+ + ++ FF+ + D + G+ TG+A V+F S +E+ A+ +
Sbjct: 303 LQNLPFTCTEVDVRGFFRGLGV--DAVRFLKDAQGRHTGKAMVKFFSPQESFEAVKRGGG 360
Query: 240 TIGSRYVELFPST 252
+G R++E+ P +
Sbjct: 361 MMGQRFIEINPGS 373
>gi|403281341|ref|XP_003945266.1| PREDICTED: LOW QUALITY PROTEIN: G-rich sequence factor 1 [Saimiri
boliviensis boliviensis]
Length = 439
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 99/192 (51%), Gaps = 14/192 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 252 VVRLRGLPYSCNEKDIIDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R+ +G R V+ R+ +Y+ + E + + P + D
Sbjct: 312 REEIGNRXVKQILMMRKCHYDLKSGEKLPKEV----------PEKLPEAADFGTTPCLHF 361
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD
Sbjct: 362 VHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFETHEDAVAAMLKD 419
Query: 238 KMTIGSRYVELF 249
+ + RY+ELF
Sbjct: 420 RSHVHHRYIELF 431
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 28/193 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 152 LIRAQGLPWSCTIEDVLNFFSDCRIRNGQNGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S ND
Sbjct: 212 EKHRLYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVND--------------------- 250
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +I+ FF I++ + R + TGEAYV+F E A +A+
Sbjct: 251 -GVVRLRGLPYSCNEKDIIDFFAGLNIVDITFVMDYR-GRRKTGEAYVQFEEPEMANQAL 308
Query: 235 CKDKMTIGSRYVE 247
K + IG+R V+
Sbjct: 309 LKHREEIGNRXVK 321
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++ +GLP+S +++ FF D +I ++ IH DGK G+A +E S ++ ++A+
Sbjct: 152 LIRAQGLPWSCTIEDVLNFFSDCRIRNGQNGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 235 CKDKMTIGSRYVELF 249
K ++ +G RYVE++
Sbjct: 212 EKHRLYMGQRYVEVY 226
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
P V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 357 PCLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 416
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 417 LKDRSHVHHRYIELF 431
>gi|158301007|ref|XP_320791.4| AGAP011722-PA [Anopheles gambiae str. PEST]
gi|157013433|gb|EAA00060.4| AGAP011722-PA [Anopheles gambiae str. PEST]
Length = 861
Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats.
Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 28/208 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 206 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMALKR 265
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ AVA + E A+ + K
Sbjct: 266 HKHHIGNRYIEVYRANGEDFL-AVAGGASNE---------------AQAFLSKGAQV--- 306
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK----IIE--DKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF + + +++ D I +PDG+ATG+A+V F +A
Sbjct: 307 IIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQDSDA 366
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
+A+ K + +IG RY+ELF ST E ++
Sbjct: 367 SKALSKHRESIGQRYIELFRSTTAEVQQ 394
Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 55/250 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + FFA LD D +L V K +GR +G+AFV+F
Sbjct: 307 IIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQDSDA 366
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP------------ 158
AL + R+++G+RY+E+FR + S V+ ++ SP
Sbjct: 367 SKALSKHRESIGQRYIELFRSTTAEVQQVCTSLVSVCRVFAQQ-KNSPTNRLTLLINVVK 425
Query: 159 -PPSRAKRYNDKD-----------QMEHTEIL--------------KMRGLPFSVKKSEI 192
PP R D Q+ ++L ++RGLP+ K I
Sbjct: 426 HPPQVLNRSMDPKTYEPPQPPLIAQLPQMQLLPQHVITSGVEKNCIRLRGLPYEAKVEHI 485
Query: 193 VQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK---DKMTIG--SRY 245
+ F D+ II +H+ G+ GEA+++ S A ++ + M G RY
Sbjct: 486 LHFLDDFANHIIYQGVHLVYNAQGQFNGEAFIQMDSETAAYQSAQQKHHKNMMFGKKQRY 545
Query: 246 VELFPSTPDE 255
+E+F + ++
Sbjct: 546 IEVFQCSGED 555
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ T I++ RGLP+ +I +FF+ + + + + P G+ GEA V FVS E
Sbjct: 199 DEIDGTCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEH 258
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K IG+RY+E++
Sbjct: 259 RDMALKRHKHHIGNRYIEVY 278
>gi|426344574|ref|XP_004038836.1| PREDICTED: G-rich sequence factor 1 [Gorilla gorilla gorilla]
Length = 362
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 252
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ I RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHIHHRYIELF 354
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 7 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 66
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 67 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 125
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 126 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 164
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 165 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 273 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 332
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 333 EDAVAAMLKDRSHIHHRYIELF 354
>gi|184185561|gb|ACC68959.1| RNA-binding protein 12 (predicted) [Rhinolophus ferrumequinum]
Length = 946
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAVENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+ + K +G+R++++ P T
Sbjct: 485 KAALSRHKQYMGNRFIQVHPIT 506
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALSRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + T++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVSSTKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 871 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 930
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 931 LNDRPIGSRKVKL 943
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>gi|395857260|ref|XP_003801023.1| PREDICTED: G-rich sequence factor 1 [Otolemur garnettii]
Length = 528
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQV 110
PP + VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P
Sbjct: 292 PPAVNDGVVRLRGLPYSCDEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMA 351
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV---------------------NYEG- 148
AL + R+ +G RY+E+F +R + V + +EG
Sbjct: 352 NQALLKHREEIGNRYIEIFPSRRNEVRTHVGAHKGKKIASSPMAKYITEPEMVFEEHEGN 411
Query: 149 -------IYDNDFHGSPPPSRAKRYNDKDQMEHTEIL---KMRGLPFSVKKSEIVQFFKD 198
++N+ P +++ + T L MRGLPF +I+ FF
Sbjct: 412 EDIRPMTAFENEKEIELPKEMSEKLPEAVDFGATPSLHFVHMRGLPFQANAQDIINFFAP 471
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
K + +I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 472 LKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 520
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A +
Sbjct: 199 LIRAQGLPWSCTVEDVLAFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEXPAVRGR 258
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
R MG++YVEV+ +D +A+ + + SPP ND
Sbjct: 259 FVHRMYMGQQYVEVYEINNEDV-DALMKSLQVK---------SPPA-----VNDG----- 298
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 299 --VVRLRGLPYSCDEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 355
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 356 LKHREEIGNRYIEIFPSRRNEVR 378
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 192 EEVDDVYLIRAQGLPWSCTVEDVLAFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 251
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
A R +M +G +YVE++
Sbjct: 252 XPAVRGRFVHRMYMGQQYVEVY 273
>gi|221041252|dbj|BAH12303.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 219 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 278
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 279 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 338
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 339 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 396
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 397 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 440
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 93 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 152
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 153 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 211
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 212 --------SP------VVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 250
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 251 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 298
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 367 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 426
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 427 KDRSHVHHRYIELF 440
>gi|410227596|gb|JAA11017.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410268188|gb|JAA22060.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306352|gb|JAA31776.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306354|gb|JAA31777.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360388|gb|JAA44703.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360390|gb|JAA44704.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
Length = 481
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 312 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 371
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 372 AFESEKEIELPKEVPEKLPEAADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 429
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 430 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 473
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + +R +GLP++CT D+ FF+ I +
Sbjct: 126 YLEDLPPPPECELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 185
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 186 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 232
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 233 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 283
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 284 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 331
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 400 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 459
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 460 KDRSHVHHRYIELF 473
>gi|34533956|dbj|BAC86863.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 218 VVRLRGLPYSCNEEDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 278 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 337
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 338 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 395
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 396 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 439
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 92 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 151
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 152 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 198
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 199 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEEDIVDFFAGLNIVDITFVM 249
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 250 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 297
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 358 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 417
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 418 EDAVAAMLKDRSHVHHRYIELF 439
>gi|256090131|ref|XP_002581067.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 472
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ + A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
Q++GRRY+EVF +D NA+ + Y+ ++ EH
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAMG---------------------CRPYHSSNRREH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ +K EI FF +I + I + G+ TGEAYV+F S E RA
Sbjct: 103 --VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAK 160
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K IG RY+E+F ST EA
Sbjct: 161 EKHMEKIGHRYIEIFESTMMEA 182
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 158 PPPSRAKRYN-------DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HI 208
P PS+ + D Q ++MRGLP+S K +I +F + + ++ +
Sbjct: 272 PSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNA 331
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
A RP TGEA V+F S +EAK AM KD+ IG RY+ELF STP
Sbjct: 332 ANRP----TGEAIVDFASHDEAKEAMKKDREKIGPRYIELFLASTP 373
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ T DI +F + L V++ + N R +GEA V FA + + A+++DR+
Sbjct: 299 VRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNAANRPTGEAIVDFASHDEAKEAMKKDRE 358
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 359 KIGPRYIELF 368
>gi|428170681|gb|EKX39604.1| hypothetical protein GUITHDRAFT_54250, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 101/196 (51%), Gaps = 16/196 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+ R+RGLP++ DI +FF G I+ +++ GR +GEAFV F AL R
Sbjct: 1 IARVRGLPYSAATADIEEFFKGCAILKDGINFVLSHGGRPAGEAFVTFETENDCRRALMR 60
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
DR M +RYVEV+ + + A+ S V+Y D+ G P + K
Sbjct: 61 DRDLMNKRYVEVYPSSEDEKHVAITSAVSYA--QDDQSSGGDPSTSYK-----------G 107
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K+RGLP+S+ +I FF I ED I I + + GEA+VEF A+ K
Sbjct: 108 VVKLRGLPYSITADDIRSFFGHLSIKEDGIIICLNRERRNNGEAFVEFTDEYVVDEAVKK 167
Query: 237 DKMTIGSRYVELFPST 252
D+ IGSRYVE+F S+
Sbjct: 168 DRQMIGSRYVEVFRSS 183
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 29 EPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-- 86
E + A++S+ S Q GG P VV+LRGLP++ T DI FF L I +
Sbjct: 77 EDEKHVAITSAVSYAQDDQSSGGDPSTSYKGVVKLRGLPYSITADDIRSFFGHLSIKEDG 136
Query: 87 -VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
++ +N+ R +GEAFV F V+ A+++DRQ +G RYVEVFR + D
Sbjct: 137 IIICLNRERRNNGEAFVEFTDEYVVDEAVKKDRQMIGSRYVEVFRSSKAD 186
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I ++RGLP+S ++I +FFK I++D I+ G+ GEA+V F + + +RA+ +
Sbjct: 1 IARVRGLPYSAATADIEEFFKGCAILKDGINFVLSHGGRPAGEAFVTFETENDCRRALMR 60
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
D+ + RYVE++PS+ DE A
Sbjct: 61 DRDLMNKRYVEVYPSSEDEKHVA 83
>gi|355687360|gb|EHH25944.1| G-rich sequence factor 1, partial [Macaca mulatta]
Length = 362
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 354
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 7 YLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 66
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 67 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 125
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 126 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 164
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 165 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 273 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 332
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 333 EDAVAAMLKDRSHVHHRYIELF 354
>gi|355749346|gb|EHH53745.1| hypothetical protein EGM_14439, partial [Macaca fascicularis]
Length = 362
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSQHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 354
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 7 YLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 66
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 67 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 125
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 126 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 164
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 165 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 212
>gi|21748975|dbj|BAC03513.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 186 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 245
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 246 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 305
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 306 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 363
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 364 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 407
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 60 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 119
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 120 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 166
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 167 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 217
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 218 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 265
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 326 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 385
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 386 EDAVAAMLKDRSHVHHRYIELF 407
>gi|312385573|gb|EFR30037.1| hypothetical protein AND_00606 [Anopheles darlingi]
Length = 1660
Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats.
Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA V F + AL+R
Sbjct: 246 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMALKR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ + N A+ + K
Sbjct: 306 HKHHIGSRYIEVYRANGEDFLSVAGGASN----------------EAQAFLTKGAQV--- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYK----IIE--DKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF + + +++ D I +PDG+ATG+A+V F +
Sbjct: 347 IIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQESDV 406
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ K + IG RY+ELF ST E ++ +RS
Sbjct: 407 NKALSKHRELIGQRYIELFRSTTAEVQQVLNRS 439
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 30/221 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + FFA LD D +L V K +GR +G+AFV+F V
Sbjct: 347 IIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQESDV 406
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R+ +G+RY+E+FR A +V + + PP A+ +
Sbjct: 407 NKALSKHRELIGQRYIELFRST-----TAEVQQVLNRSMDPKTYEPPQPPLIAQLPQVQM 461
Query: 171 QM--EHT-------EILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGE 219
Q+ +H +++RGLP+ K I+ F D+ I+ +H+ G+ GE
Sbjct: 462 QLLPQHVITSGTEKNCIRLRGLPYEAKVEHILHFLDDFAKHIVYQGVHLVYNAQGQFNGE 521
Query: 220 AYVEFVSVEEAKRAMCK---DKMTIG--SRYVELFPSTPDE 255
A+++ S A ++ + M G RY+E+F + D+
Sbjct: 522 AFIQMDSEAAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGDD 562
Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ T I++ RGLP+ +I +FF+ + + + + P G+ GEA V FVS E
Sbjct: 239 DEIDGTCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEH 298
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K IGSRY+E++
Sbjct: 299 RDMALKRHKHHIGSRYIEVY 318
>gi|441626116|ref|XP_003265953.2| PREDICTED: G-rich sequence factor 1 [Nomascus leucogenys]
Length = 539
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 310 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 369
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 370 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKITSFPTAKYITEPEMVFEEHEVNEDIQPMT 429
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + +RGLPF +I+ FF K + +
Sbjct: 430 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHVRGLPFQANAQDIINFFAPLKPV--R 487
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 488 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 531
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 53 PPPPSFPV-VRLRGLP--FNCTDIDICKFFAGLDIVDV----------LLVNKNGRFSGE 99
P PS P+ RL G P + C + +F D +D L+N++G+ G+
Sbjct: 195 PERPSAPLGRRLLGRPLGYTCLRLLDVQFKPKQDGLDCRIRNGENGIHFLLNRDGKRRGD 254
Query: 100 AFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS-EVNYEGIYDNDFHGSP 158
A + V+ AL++ R MG+RYVEV+ +D + S EV + ++
Sbjct: 255 ALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLEVKSSPVVNDG----- 309
Query: 159 PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
++++RGLP+S + +IV FF I++ + R + TG
Sbjct: 310 ------------------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYR-GRRKTG 350
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
EAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 351 EAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 389
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 458 SLHFVHVRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 517
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 518 KDRSHVHHRYIELF 531
>gi|221042436|dbj|BAH12895.1| unnamed protein product [Homo sapiens]
Length = 393
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 164 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 223
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 224 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 283
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 284 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 341
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 342 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 385
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 38 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 97
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 98 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 156
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 157 --------SP------VVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 195
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 196 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 243
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 304 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 363
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 364 EDAVAAMLKDRSHVHHRYIELF 385
>gi|308498127|ref|XP_003111250.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
gi|308240798|gb|EFO84750.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
Length = 558
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V+ RGLP+ T+ D+ FF G I V + +NGR SG+A V F+ + AL++DR++
Sbjct: 7 VQCRGLPWEATEEDLRGFFGGNGIESVDIPKRNGRTSGDATVTFSNEDDYKLALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT----- 175
+G RY+EVF + G G PP RY+D+ + +
Sbjct: 67 LGSRYIEVFPMNSAPRRRGDRDDFRPRG-------GGPP---RDRYSDRGEQHRSGGTGG 116
Query: 176 --EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I+++RGLPFSV +I F + I+ D I + + + +GEAY+ F +E + A
Sbjct: 117 PDPIIRLRGLPFSVTARDINDFLQPLGIVRDGILLPDQQRARPSGEAYIVFDMLESVQIA 176
Query: 234 MCKDKMTIGSRYVELFPSTPDEARR 258
+ IG RY+E+F +T E +R
Sbjct: 177 KQRHMKNIGHRYIEVFEATHRELQR 201
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQ 115
P++RLRGLPF+ T DI F L IV D +L+ + R SGEA++VF V+ A Q
Sbjct: 119 PIIRLRGLPFSVTARDINDFLQPLGIVRDGILLPDQQRARPSGEAYIVFDMLESVQIAKQ 178
Query: 116 RDRQNMGRRYVEVFRCKRQD 135
R +N+G RY+EVF ++
Sbjct: 179 RHMKNIGHRYIEVFEATHRE 198
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG-RFSGEAFVVFAGPIQVEFALQRDR 118
V+R+RG+PF T+ D+ FF + V L+ N R SG+A V+F + AL +D+
Sbjct: 482 VLRMRGVPFRATEEDVYDFFRPIRPNKVELIRDNQFRASGDARVIFFSRKDYDEALMKDK 541
Query: 119 QNMGRRYVEVF 129
Q MG RY+E+
Sbjct: 542 QYMGERYIEMI 552
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
Q +H +L+MRG+PF + ++ FF+ I +K+ + +A+G+A V F S ++
Sbjct: 477 QSQHF-VLRMRGVPFRATEEDVYDFFR--PIRPNKVELIRDNQFRASGDARVIFFSRKDY 533
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
A+ KDK +G RY+E+ P
Sbjct: 534 DEALMKDKQYMGERYIEMIPDN 555
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
M T ++ RGLP+ + ++ FF I + + I R +G+ +G+A V F + ++ K
Sbjct: 1 MSETFQVQCRGLPWEATEEDLRGFFGGNGI--ESVDIPKR-NGRTSGDATVTFSNEDDYK 57
Query: 232 RAMCKDKMTIGSRYVELFP 250
A+ KD+ +GSRY+E+FP
Sbjct: 58 LALKKDREHLGSRYIEVFP 76
>gi|193786243|dbj|BAG51526.1| unnamed protein product [Homo sapiens]
Length = 412
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 183 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 242
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 243 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 302
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 303 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 360
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 361 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 404
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 57 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 116
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 117 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 163
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 164 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 214
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 215 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 262
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 323 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 382
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 383 EDAVAAMLKDRSHVHHRYIELF 404
>gi|344284915|ref|XP_003414210.1| PREDICTED: G-rich sequence factor 1 [Loxodonta africana]
Length = 484
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 255 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 314
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 315 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIPAMT 374
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 375 TFESEKEIELPKEMSEKLPEAVDFGATPSVHFVHMRGLPFQANAQDIINFFAPLKPV--R 432
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 433 ITMEYSSSGKATGEADVHFSTHEDAVAAMLKDRSHVHHRYIELF 476
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 155 LIRAQGLPWSCTVEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESQQDVQKAL 214
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ R MG+RYVEV+ +D +A+ + + SP ND
Sbjct: 215 GKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKA--------SPV------VNDG----- 254
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 255 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 311
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 312 LKHREEIGNRYIEIFPSRRNEVR 334
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 158 PPPSRAKRY---NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRP 212
PPP N ++++ +++ +GLP+S +++ FF D +I E+ IH
Sbjct: 133 PPPLHEYELATSNLGEEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNGENGIHFLLNR 192
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
DGK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 193 DGKRRGDALIEMESQQDVQKALGKHRMYMGQRYVEVY 229
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F PS V +RGLPF DI FFA L V + + + +G+ +GEA V F+
Sbjct: 398 FGATPSVHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFSTHEDA 457
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 458 VAAMLKDRSHVHHRYIELF 476
>gi|148673402|gb|EDL05349.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Mus musculus]
Length = 429
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 200 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 259
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 260 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 319
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 320 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 377
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 378 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 421
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 100 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 159
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 160 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 199
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 200 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 256
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 257 LKHREEIGNRYIEIFPSRRNEVR 279
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
D+++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 93 DEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 152
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 153 QDVQKALEKHRMYMGQRYVEVY 174
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 347 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 406
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 407 LKDRSHVQHRYIELF 421
>gi|291401649|ref|XP_002717080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like, partial
[Oryctolagus cuniculus]
Length = 482
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 253 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 312
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 313 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEVVFEEHEVNEDIRPIT 372
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHT---EILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P +++ + + T + MRGLPF +I+ FF K + +
Sbjct: 373 AFESEKEIELPKEMSEKLPEAVDLGTTPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 430
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 431 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 474
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 153 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 212
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ E+N E + + S + ND
Sbjct: 213 EKHRMYMGQRYVEVY-------------EINNEDV--DALMKSLQVKSSPVVNDG----- 252
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 253 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 309
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 310 LKHREEIGNRYIEIFPSRRNEVR 332
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 400 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 459
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 460 LKDRSHVHHRYIELF 474
>gi|148596982|ref|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musculus]
Length = 362
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 252
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 253 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 354
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 132
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 133 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 189
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 190 LKHREEIGNRYIEIFPSRRNEVR 212
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
D+++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 26 DEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 85
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 86 QDVQKALEKHRMYMGQRYVEVY 107
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 280 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 339
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 340 LKDRSHVQHRYIELF 354
>gi|302828822|ref|XP_002945978.1| splicing factor like protein [Volvox carteri f. nagariensis]
gi|300268793|gb|EFJ52973.1| splicing factor like protein [Volvox carteri f. nagariensis]
Length = 578
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 30/216 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVF-AGPIQVE 111
PP P V+RLRGLPF+ + D+ FF+G ++ V++ + GR +GE +V + E
Sbjct: 30 PPQPKSSVLRLRGLPFSAGEEDVRHFFSGFNVAQVVIGKRAGRSTGEGYVQLDSTSAAAE 89
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
++ RQ +G RY+EVF D A + V+ R + +
Sbjct: 90 AIMKLHRQTLGHRYIEVFESTEADLATAKSLSVD----------------RMRGF----- 128
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFF-KDYKIIE--DKIHIACRPDGKATGEAYVEFVSVE 228
+++ RGLP++ +++ FF D ++ + + PDG+ TGEA+VEF + +
Sbjct: 129 -----VVRCRGLPYTATAQDVLNFFGSDAPVVRGIEGVVFTYAPDGRPTGEAFVEFQTED 183
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
+ A+ K K ++G+RY+ELF ST + +A ++R
Sbjct: 184 AQREALKKHKESMGARYIELFVSTKVDMIQAIQQNR 219
>gi|322801457|gb|EFZ22118.1| hypothetical protein SINV_07549 [Solenopsis invicta]
Length = 425
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 29/189 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++ T +I KFF I + + ++ GR SGEA+V P +E A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+RDR +MG RY+EVF+ KR + V S +N E D+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNLENAMDDG-------------------- 113
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+++RGLPF K EI QFF +I+ + I + G++TGEAYV+FV+ + A+RA
Sbjct: 114 ---CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERA 170
Query: 234 MCKDKMTIG 242
+ K K IG
Sbjct: 171 LQKHKEKIG 179
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 173 EHTE---ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSV 227
EH E ++K+RGLP+S EI++FF D I K +H+ +G+ +GEAYVE +
Sbjct: 7 EHEEEGYVVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTSREGRPSGEAYVEMDTP 66
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E+ ++A +D+ +G RY+E+F + E RS
Sbjct: 67 EDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVVKRS 102
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF + +I FF+ + + + I G+ +GEA VEF + EEA +AMCKD
Sbjct: 335 IHMRGLPFKATEQDIADFFRPIEPV--NVRIILENGGRPSGEADVEFATHEEALKAMCKD 392
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 393 KSHMSHRYIELF 404
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +RGLPF T+ DI FF ++ V+V ++ +N GR SGEA V FA + A+ +D+
Sbjct: 335 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEALKAMCKDKS 394
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 395 HMSHRYIELF 404
>gi|332227572|ref|XP_003262966.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Nomascus leucogenys]
Length = 717
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKAMLGKRYIELFRSTAAEVQQVLNR 437
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDND----FHGSPPPSRAKRY 166
L+R + +G+RY+E+FR + Q N AS + F +P R
Sbjct: 409 LRRHKAMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAPGTGR---- 464
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F + I +H+ G+ +G+A+++
Sbjct: 465 ---------DCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 515
Query: 225 VSVEEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
S E A A C K+ + RYVE+ P + +E R
Sbjct: 516 TSAERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|353232935|emb|CCD80290.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 497
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ + A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
Q++GRRY+EVF +D NA+ + Y+ ++ EH
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAMG---------------------CRPYHSSNRREH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ +K EI FF +I + I + G+ TGEAYV+F S E RA
Sbjct: 103 --VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAK 160
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K IG RY+E+F ST EA
Sbjct: 161 EKHMEKIGHRYIEIFESTMMEA 182
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 158 PPPSRAKRYN-------DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HI 208
P PS+ + D Q ++MRGLP+S K +I +F + + ++ +
Sbjct: 272 PSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNA 331
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
A RP TGEA V+F S +EAK AM KD+ IG RY+ELF STP
Sbjct: 332 ANRP----TGEAIVDFASHDEAKEAMKKDREKIGPRYIELFLASTP 373
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ T DI +F + L V++ + N R +GEA V FA + + A+++DR+
Sbjct: 299 VRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNAANRPTGEAIVDFASHDEAKEAMKKDRE 358
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 359 KIGPRYIELF 368
>gi|332227574|ref|XP_003262967.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Nomascus leucogenys]
Length = 727
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKAMLGKRYIELFRSTAAEVQQVLNR 447
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDND----FHGSPPPSRAKRY 166
L+R + +G+RY+E+FR + Q N AS + F +P R
Sbjct: 419 LRRHKAMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAPGTGR---- 474
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F + I +H+ G+ +G+A+++
Sbjct: 475 ---------DCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQM 525
Query: 225 VSVEEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
S E A A C K+ + RYVE+ P + +E R
Sbjct: 526 TSAERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 560
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>gi|108743797|gb|ABG02207.1| IP16182p [Drosophila melanogaster]
Length = 694
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKD-----YKIIE--DKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFRCKR---QDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR Q N NYE
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEIL----------KMRGLPFSVKKS 190
G + + G+ P + T+ L ++RGLP+
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 618
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 KYRYIEVFQCSGDD 632
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K IG+RY+E++
Sbjct: 333 RDMALKRHKHHIGTRYIEVY 352
>gi|397475207|ref|XP_003809035.1| PREDICTED: G-rich sequence factor 1 [Pan paniscus]
Length = 362
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 252
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 354
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + +R +GLP++CT D+ FF+ I +
Sbjct: 7 YLEDLPPPPECELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 66
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 67 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 125
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 126 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 164
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 165 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 273 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 332
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 333 EDAVAAMLKDRSHVHHRYIELF 354
>gi|26354144|dbj|BAC40702.1| unnamed protein product [Mus musculus]
Length = 344
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 115 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 174
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 175 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 234
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 235 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 292
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 293 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 336
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 15 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 74
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 75 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 114
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 115 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 171
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 172 LKHREEIGNRYIEIFPSRRNEVR 194
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSV 227
D+++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 8 DEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESE 67
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 68 QDVQKALEKHRMYMGQRYVEVY 89
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 262 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 321
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 322 LKDRSHVQHRYIELF 336
>gi|90084329|dbj|BAE91006.1| unnamed protein product [Macaca fascicularis]
Length = 318
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 149 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 208
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 209 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 266
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I + GKATGEA V F + E+A AM KD+ + RY+ELF ++
Sbjct: 267 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 28/189 (14%)
Query: 74 DICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEV 128
D+ FF+ I + L+N++G+ G+A + V+ AL++ R MG+RYVEV
Sbjct: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
Query: 129 FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVK 188
+ +D +A+ + + SP ND ++++RGLP+S
Sbjct: 63 YEINNEDV-DALMKSLQVKS--------SPV------VNDG-------VVRLRGLPYSCN 100
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ +IV FF I++ + R K TGEAYV+F E A +A+ K + IG+RY+E+
Sbjct: 101 EKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEI 159
Query: 249 FPSTPDEAR 257
FPS +E R
Sbjct: 160 FPSRRNEVR 168
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 229 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 288
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 289 EDAVAAMLKDRSHVHHRYIELF 310
>gi|296196376|ref|XP_002745793.1| PREDICTED: G-rich sequence factor 1 [Callithrix jacchus]
Length = 479
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 370 AFESEKEIELPKEVPEKLPEAADFGTTPCLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 471
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ E+N E + + S + ND
Sbjct: 210 EKHRMYMGQRYVEVY-------------EINNEDV--DALMKSLQVKSSPVVNDG----- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 143 EEVDDVYLIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 202
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 203 QDVQKALEKHRMYMGQRYVEVY 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F P V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 393 FGTTPCLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDA 452
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 453 VAAMLKDRSHVHHRYIELF 471
>gi|256090135|ref|XP_002581069.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232933|emb|CCD80288.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 338
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ + A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
Q++GRRY+EVF +D NA+ + Y+ ++ EH
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAMG---------------------CRPYHSSNRREH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ +K EI FF +I + I + G+ TGEAYV+F S E RA
Sbjct: 103 --VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAK 160
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K IG RY+E+F ST EA
Sbjct: 161 EKHMEKIGHRYIEIFESTMMEA 182
>gi|358341226|dbj|GAA32134.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 404
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 99/202 (49%), Gaps = 28/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++ DI FF + I + NGR +GEAF+ ++E A
Sbjct: 3 VVRIRGLPYSARADDIIDFFKDVKIKNGKRGIFFPQGPNGRSNGEAFIELESKQEIEKAT 62
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++MGRRY+EVF Q+ NA+ Y +D+ E+
Sbjct: 63 AHHNEHMGRRYIEVFPSTEQEMNNAMGKHDQY---------------------TRDRKEY 101
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ +K EI FF +I + I + G+ TGEAYV+F S E RA
Sbjct: 102 --VVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSAEMLARAK 159
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K IG RY+E+F S+ EA
Sbjct: 160 EKHMEKIGHRYIEIFESSMLEA 181
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 37 SSSASGFQPYGYGGGFPPPPSFP------VVRLRGLPFNCTDIDICKFFAGLDIVDVLL- 89
S G + GYG P P P VRLRGLPF+ T DI +F A L V+V +
Sbjct: 275 SHMGPGSKSGGYGPMSNPEPEDPQSVTGHSVRLRGLPFSATADDIDRFLAPLQPVNVRIR 334
Query: 90 VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+N +GR +GEA V FA + + A+++DR+ +G RY+E+F
Sbjct: 335 MNSSGRPTGEAVVDFASHDEAKEAMKKDREKIGSRYIELF 374
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPFS +I +F + + + I G+ TGEA V+F S +EAK AM KD
Sbjct: 305 VRLRGLPFSATADDIDRFLAPLQPV--NVRIRMNSSGRPTGEAVVDFASHDEAKEAMKKD 362
Query: 238 KMTIGSRYVELF-PSTP 253
+ IGSRY+ELF STP
Sbjct: 363 REKIGSRYIELFLASTP 379
>gi|74761482|sp|Q9H6T0.1|ESRP2_HUMAN RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|10438126|dbj|BAB15173.1| unnamed protein product [Homo sapiens]
gi|119603620|gb|EAW83214.1| RNA binding motif protein 35B, isoform CRA_a [Homo sapiens]
Length = 727
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 475
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 476 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 533 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 560
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>gi|149193319|ref|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sapiens]
gi|119626036|gb|EAX05631.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626037|gb|EAX05632.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626038|gb|EAX05633.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|193786999|dbj|BAG51822.1| unnamed protein product [Homo sapiens]
gi|193787731|dbj|BAG52934.1| unnamed protein product [Homo sapiens]
gi|193788237|dbj|BAG53131.1| unnamed protein product [Homo sapiens]
gi|193788520|dbj|BAG53414.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 36/227 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 149 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 208
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 209 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 266
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I + GKATGEA V F + E+A AM KD+ + RY+ELF ++
Sbjct: 267 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 28/189 (14%)
Query: 74 DICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEV 128
D+ FF+ I + L+N++G+ G+A + V+ AL++ R MG+RYVEV
Sbjct: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
Query: 129 FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVK 188
+ +D +A+ + + SP ND ++++RGLP+S
Sbjct: 63 YEINNEDV-DALMKSLQVKS--------SPV------VNDG-------VVRLRGLPYSCN 100
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ +IV FF I++ + R K TGEAYV+F E A +A+ K + IG+RY+E+
Sbjct: 101 EKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEI 159
Query: 249 FPSTPDEAR 257
FPS +E R
Sbjct: 160 FPSRRNEVR 168
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 229 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 288
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 289 EDAVAAMLKDRSHVHHRYIELF 310
>gi|256090133|ref|XP_002581068.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232934|emb|CCD80289.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 386
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ + A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
Q++GRRY+EVF +D NA+ + Y+ ++ EH
Sbjct: 64 AHHNQHLGRRYIEVFDSCSEDLNNAMG---------------------CRPYHSSNRREH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ +K EI FF +I + I + G+ TGEAYV+F S E RA
Sbjct: 103 --VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAK 160
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K IG RY+E+F ST EA
Sbjct: 161 EKHMEKIGHRYIEIFESTMMEA 182
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 158 PPPSRAKRYN-------DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HI 208
P PS+ + D Q ++MRGLP+S K +I +F + + ++ +
Sbjct: 272 PSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNA 331
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
A RP TGEA V+F S +EAK AM KD+ IG RY+ELF ++ + SR R
Sbjct: 332 ANRP----TGEAIVDFASHDEAKEAMKKDREKIGPRYIELFLASTPKGISPSSRIR 383
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ T DI +F + L V++ + N R +GEA V FA + + A+++DR+
Sbjct: 299 VRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNAANRPTGEAIVDFASHDEAKEAMKKDRE 358
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 359 KIGPRYIELF 368
>gi|46195836|ref|NP_996869.1| RNA-binding protein 12 [Gallus gallus]
gi|37932175|gb|AAP69823.1| SWAN ribonucleoprotein [Gallus gallus]
Length = 887
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ T+ D+ +FF GL + + +L + GR +G V F P AL+R+R
Sbjct: 306 VSIHGMPFSATESDVKEFFLGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG----------SPPPSRAKRYNDK 169
M +RYVEV + + A + ++ S PS KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQTMGPSGQPHPPPPQPHFRSKSPSGQKRSRSR 424
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
E + ++GLPF + ++ FFK I+ED I+IA P+GKA GE +VEF + +
Sbjct: 425 SPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEAD 484
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
K A+C K IG+R++++ P T
Sbjct: 485 YKAALCHHKQYIGNRFIQVHPIT 507
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 27/212 (12%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ GE FV F + AL
Sbjct: 433 VYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHH 492
Query: 118 RQNMGRRYVEVFRCKRQ------DYYNAVASEVNY---EGIYDNDFHGSPPPSRAKRYND 168
+Q +G R+++V ++ D NY E I + + P A N
Sbjct: 493 KQYIGNRFIQVHPITKKAMLEKIDLIRKRLQNFNYDQREIIMNAEAESGSPKLCAHISN- 551
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+P+++ K EI+QF + + E+ + I +G+ G+A V+F + +
Sbjct: 552 --------------IPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAED 597
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
+A++A + + R V L T +E R E
Sbjct: 598 DARKAERLHRKKLNGRDVVLRLITVEEMRDIE 629
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 805 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVV 863
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|426382631|ref|XP_004057907.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 727
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 475
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 476 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 533 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 560
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>gi|45935393|ref|NP_079215.2| epithelial splicing regulatory protein 2 [Homo sapiens]
gi|20988380|gb|AAH30146.1| Epithelial splicing regulatory protein 2 [Homo sapiens]
gi|119603622|gb|EAW83216.1| RNA binding motif protein 35B, isoform CRA_c [Homo sapiens]
Length = 717
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 465
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 466 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 523 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|118381178|ref|XP_001023750.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila]
gi|89305517|gb|EAS03505.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila
SB210]
Length = 570
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VVR+RGLP++CT+ DI KFF GL I+ + GR GE FV+F AL
Sbjct: 385 VVRIRGLPYSCTEEDIKKFFKGLTILQGGIKRAILGGRPGGECFVIFQNKDDAHKALNFH 444
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASE-VNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ + R++EVF +++ N +A VN +Y D + P + K
Sbjct: 445 MEKIHNRFIEVFLATVKEFENYMAHNFVNSAPVYSKDNMPNIPQEKRK-----------S 493
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
L + G+PFSV K +I++FFK + I E +IH+ C GK +G A V F EA+RA+
Sbjct: 494 TLMVMGMPFSVTKQKILEFFKGFDINEREIHLLCSHTGKFSGSALVTFEDELEAQRALKT 553
Query: 236 KDKMTIGSRYVELF 249
K+ I +RY+ELF
Sbjct: 554 KNFSYIENRYLELF 567
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+R+RGLP++ + +I + + I L + G+FSGEA+V + + AL +
Sbjct: 271 IRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVRVYSQLDKQEALCYN 330
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R+VE+F ++ A S+ + D++ P+ + +K E +
Sbjct: 331 LNKVEGRFVEIFETTENEFNRAKISQFPEKRNQDDEL-----PNETQFDLNKIVTEGAGV 385
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLP+S + +I +FFK I++ I A G+ GE +V F + ++A +A+
Sbjct: 386 VRIRGLPYSCTEEDIKKFFKGLTILQGGIKRAI-LGGRPGGECFVIFQNKDDAHKALNFH 444
Query: 238 KMTIGSRYVELFPSTPDE 255
I +R++E+F +T E
Sbjct: 445 MEKIHNRFIEVFLATVKE 462
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ +++RGLP+S ++ EI + K+ +I ++ I +GK +GEAYV S + +
Sbjct: 265 LSQQHFIRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVRVYSQLDKQ 324
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A+C + + R+VE+F +T +E RA+
Sbjct: 325 EALCYNLNKVEGRFVEIFETTENEFNRAK 353
>gi|397487054|ref|XP_003814628.1| PREDICTED: epithelial splicing regulatory protein 2, partial [Pan
paniscus]
Length = 713
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 244 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 303
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 304 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 344
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 345 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 404
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 405 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 433
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 345 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 404
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 405 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 461
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 462 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 518
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 519 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 546
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 234 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 293
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 294 SEQRDLALQRHKHHMGVRYIEVYKATGEE 322
>gi|118151012|ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus]
gi|117306552|gb|AAI26704.1| G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 481
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 312 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 371
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 372 AFESEKEIELPKEMSEKIPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 429
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 430 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 473
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S H P M +
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LHVKSAP-----------MVN 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 DGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMASQAL 308
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 309 LKHREEIGNRYIEIFPSRRNEVR 331
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 145 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 204
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 205 QDVQKALEKHRMYMGQRYVEVY 226
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 395 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDA 454
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 455 VAAMLKDRSHVHHRYIELF 473
>gi|426382629|ref|XP_004057906.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Gorilla gorilla gorilla]
Length = 717
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 465
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 466 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 523 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|297699056|ref|XP_002826613.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Pongo abelii]
Length = 717
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPVLPTLTAPLLPIPFPLAPGTGRD--- 465
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 466 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 523 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|296478109|tpg|DAA20224.1| TPA: fusilli-like [Bos taurus]
Length = 717
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VV RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVWARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD- 465
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 -------CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSA 518
Query: 228 EEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
E A A + K + RYVE+ P + +E R
Sbjct: 519 ERALAAAQRCHKKAMKERYVEVVPCSTEEMSR 550
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ ++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVWARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|114663263|ref|XP_511052.2| PREDICTED: epithelial splicing regulatory protein 2 isoform 2 [Pan
troglodytes]
Length = 717
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 465
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 466 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 523 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 238 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|114663265|ref|XP_001167050.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1 [Pan
troglodytes]
Length = 727
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 475
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 476 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 533 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 560
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>gi|363741413|ref|XP_003642489.1| PREDICTED: RNA-binding protein 12-like [Gallus gallus]
Length = 880
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 12/203 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ T+ D+ +FF GL + + +L + GR +G V F P AL+R+R
Sbjct: 306 VSIHGMPFSATESDVKEFFLGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG----------SPPPSRAKRYNDK 169
M +RYVEV + + A + ++ S PS KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQTMGPSGQPHPPPPQPHSRSKSPSGQKRSRSR 424
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
E + ++GLPF + ++ FFK I+ED I+IA P+GKA GE +VEF + +
Sbjct: 425 SPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEAD 484
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
K A+C K IG+R++++ P T
Sbjct: 485 YKAALCHHKQYIGNRFIQVHPIT 507
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 27/212 (12%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ GE FV F + AL
Sbjct: 433 VYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHH 492
Query: 118 RQNMGRRYVEVFRCKRQ------DYYNAVASEVNY---EGIYDNDFHGSPPPSRAKRYND 168
+Q +G R+++V ++ D NY E I + + P A N
Sbjct: 493 KQYIGNRFIQVHPITKKAMLEKIDLIRKRLQNFNYDQREIIMNAEAESGSPKLCAHISN- 551
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+P+++ K EI+QF + + E+ + I +G+ G+A V+F + +
Sbjct: 552 --------------IPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAED 597
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
+A++A + + R V L T +E R E
Sbjct: 598 DARKAERLHRKKLNGRDVVLRLITVEEMRDIE 629
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 805 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 864
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 865 LNDRPIGSRKVKL 877
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|403290547|ref|XP_003936375.1| PREDICTED: epithelial splicing regulatory protein 2 [Saimiri
boliviensis boliviensis]
Length = 715
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 306 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 347 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 347 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFALAAGTGRD--- 463
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 464 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 521 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 548
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 236 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 295
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 296 SEQRDLALQRHKHHMGVRYIEVYKATGEE 324
>gi|297699054|ref|XP_002826612.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Pongo abelii]
Length = 727
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPVLPTLTAPLLPIPFPLAPGTGRD--- 475
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 476 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 533 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 560
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>gi|242017929|ref|XP_002429436.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514368|gb|EEB16698.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 766
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 29/216 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L ++ GR +GEA V F + AL+R
Sbjct: 195 VVRARGLPWQSSDGDIARFFRGLNIEKGGVALCLSPAGRRNGEALVRFVNQAHRDMALKR 254
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG+RY+EV++ +++ V G + H +R +
Sbjct: 255 HKHHMGQRYIEVYKSTGEEF-------VFVAGGSSTEAHNFL--TRGGQV---------- 295
Query: 177 ILKMRGLPFSVKKSEIVQFFKD-----YKII--EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ ++++FF+ +++ ED + + DG+ATG+A+V F + +
Sbjct: 296 IIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSNESD 355
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
A +A+ K + IGSRY+ELF ST E ++ +R+++
Sbjct: 356 APKALSKHRERIGSRYIELFRSTTAEVQQVLNRAQE 391
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 20/216 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFF-----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP+ CT + +FF +++D VL V K +GR +G+AFV+F+
Sbjct: 296 IIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSNESD 355
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYND 168
AL + R+ +G RY+E+FR + + ++ + + + P P Y
Sbjct: 356 APKALSKHRERIGSRYIELFRSTTAEVQQVLNRAQEDPKPVPVQLPPQLPTPLPTTLYPQ 415
Query: 169 KDQMEHT--EILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEF 224
+ T +++RGLP+ + I+ F DY I+ +H+ G+ +GEA+++
Sbjct: 416 QLITSGTSKNCIRLRGLPYEAQVEHILDFLGDYAKNIVFQGVHMVYNSHGQPSGEAFIQM 475
Query: 225 VSVEEAKRAMCKDK---MTIG--SRYVELFPSTPDE 255
S A A M G RYVE+F + D+
Sbjct: 476 DSEASAFHAANHRHHQYMIFGKKQRYVEVFQCSGDD 511
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++ +++ RGLP+ +I +FF+ I + + + P G+ GEA V FV+
Sbjct: 188 EEVDPNSVVRARGLPWQSSDGDIARFFRGLNIEKGGVALCLSPAGRRNGEALVRFVNQAH 247
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ ST +E
Sbjct: 248 RDMALKRHKHHMGQRYIEVYKSTGEE 273
>gi|341902820|gb|EGT58755.1| CBN-SYM-2 protein [Caenorhabditis brenneri]
Length = 761
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 38/240 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V R RGLP+ +D + +FFAGLDIV L ++ GR +GE V FA + AL+R
Sbjct: 208 VCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFASQESRDLALKR 267
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK---------RY- 166
R + RY+EV++ ++ + + + F PPS R+
Sbjct: 268 HRNFLLSRYIEVYKAGLDEFMHVATGHPEHIRSFLPRFWLISPPSAPSIPGVSRSPCRFL 327
Query: 167 --------------------NDKDQMEHTE----ILKMRGLPFSVKKSEIVQFFKDYKII 202
+ + ME I++MRGLP+ ++I FF+ K+
Sbjct: 328 TNFSLFLSFPAFPNPYFFSGSSTEAMEFVSANAVIVRMRGLPYDCSDNQIRAFFEPLKLT 387
Query: 203 EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
E KI R DG+ TG+A+V+F + E+A++ + K + IG RY+ELF ST E ++ R
Sbjct: 388 E-KILFITRTDGRPTGDAFVQFETEEDAQKGLLKHRHIIGQRYIELFKSTAAEVQQVVKR 446
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 30 PNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL 89
PNPYF SS + +VR+RGLP++C+D I FF L + + +L
Sbjct: 340 PNPYFFSGSSTEAMEFVSANAV--------IVRMRGLPYDCSDNQIRAFFEPLKLTEKIL 391
Query: 90 --VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
+GR +G+AFV F + L + R +G+RY+E+F+ + A+EV
Sbjct: 392 FITRTDGRPTGDAFVQFETEEDAQKGLLKHRHIIGQRYIELFK--------STAAEVQQV 443
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEI 192
N + +P + A D+ + + +++RGLP+ S +
Sbjct: 444 VKRCNLINSNPAVANAIETPDEKK---KDCVRLRGLPYEATVSRV 485
>gi|517196|gb|AAC95399.1| G-rich sequence factor-1 [Homo sapiens]
Length = 424
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 195 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 254
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNY----EG 148
R+ +G RY+E+F +R + V S EVN
Sbjct: 255 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEVFQPMT 314
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 315 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 372
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 373 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 416
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 69 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 128
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 129 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 175
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 176 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 226
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 227 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 274
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 335 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 394
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 395 EDAVAAMLKDRSHVHHRYIELF 416
>gi|73975377|ref|XP_532402.2| PREDICTED: G-rich sequence factor 1 [Canis lupus familiaris]
Length = 372
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 143 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 202
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 203 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEHEVNEDIRPMT 262
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEIL---KMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P +++ + T L MRGLPF +I+ FF K + +
Sbjct: 263 AFESEKEIELPKEMSEKLPEAVDFGATSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 320
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + +GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 321 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 364
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 43 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 102
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D +A+ + + SP ND
Sbjct: 103 EKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS--------SPV------VNDG----- 142
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 143 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 199
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 200 LKHREEIGNRYIEIFPSRRNEVR 222
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + NG+ +GEA V F
Sbjct: 286 FGATSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDA 345
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 346 VAAMLKDRSHVHHRYIELF 364
>gi|281347672|gb|EFB23256.1| hypothetical protein PANDA_008197 [Ailuropoda melanoleuca]
Length = 362
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMSSSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I + +GKATGEA V F + E+A AM KD+ + RY+ELF ++
Sbjct: 311 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D +A+ + + SP ND
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS--------SPV------VNDG----- 132
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 133 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 189
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 190 LKHREEIGNRYIEIFPSRRNEVR 212
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + NG+ +GEA V F
Sbjct: 276 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDA 335
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 336 VAAMLKDRSHVHHRYIELF 354
>gi|449265752|gb|EMC76898.1| RNA-binding protein 12, partial [Columba livia]
Length = 853
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ T+ D+ FF GL + V +L + GR +G V F P AL+R+R
Sbjct: 291 VSIHGMPFSATESDVKDFFLGLRVDAVHMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRM 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG----------SPPPSRAKRYNDK 169
M +RYVEV + + A + ++ S PS KR +
Sbjct: 351 LMIQRYVEVSPATERQWV-AAGGHITFKQTMGPSGQSHPPPPQPHSRSKSPSGQKRSRSR 409
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
E + ++GLPF + ++ FFK I+ED I+IA P+GKA GE +VEF + +
Sbjct: 410 SPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEAD 469
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
K A+C K IG+R++++ P T
Sbjct: 470 YKAALCHHKQYIGNRFIQVHPIT 492
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 25/211 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ GE FV F + AL
Sbjct: 418 VYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHH 477
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
+Q +G R+++V ++ A+ +++ +F Y+ ++ + + E
Sbjct: 478 KQYIGNRFIQVHPITKK----AMLEKIDMIRKRLQNF----------SYDQREILMNAEG 523
Query: 177 -------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +P+++ K EI+QF + + E+ + I +G+ G+A V+F + ++
Sbjct: 524 EPGLPKLCAHISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDD 583
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A++A + + R V L T +E R E
Sbjct: 584 ARKAERLHRKKLNGRDVVLRLITVEEMRDIE 614
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 790 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVV 848
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDMPPANASRSGPPPS 110
>gi|426231834|ref|XP_004009942.1| PREDICTED: G-rich sequence factor 1 [Ovis aries]
Length = 362
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS------------------EVNYEGIYDND------ 153
R+ +G RY+E+F +R + V S EV +E N+
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEVVFEEHEVNEDIRPMT 252
Query: 154 -FHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIESPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I + GKATGEA V F + E+A AM KD+ + RY+ELF ++
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S H P ND
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LHVKSAPV----VNDG----- 132
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 133 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMASQAL 189
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 190 LKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 276 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDA 335
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 336 VAAMLKDRSHVHHRYIELF 354
>gi|26346715|dbj|BAC37006.1| unnamed protein product [Mus musculus]
Length = 479
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRL GLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLTGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++ GLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLTGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|198461689|ref|XP_001362087.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
gi|198137420|gb|EAL26667.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
Length = 910
Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 358
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 359 HKHHIGARYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 399
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKI------IEDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF + + + +PDG+ATG+A+V F + +A
Sbjct: 400 IIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANEGDA 459
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 460 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 492
Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 56/249 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + +FF A ++D VL V K +GR +G+AFV+FA
Sbjct: 400 IIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANEGDA 459
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP----------- 159
AL R R+++G+RY+E+FR + + ++ + ++ H PP
Sbjct: 460 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPK-TFETSSHSQPPLIAQLPTMQLP 518
Query: 160 -----------------PSRAKRYNDKDQMEH-------TEILKMRGLPFSVKKSEIVQF 195
P A +H +++RGLP+ I+ F
Sbjct: 519 LLPQVGVVTHGNGRVPVPVPANLCPHPHPPQHLITSGTTKNCIRLRGLPYEAMVEHILHF 578
Query: 196 FKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS--RYV 246
D+ II +H+ G+ +GEA+++ S + A+ +C + M G RY+
Sbjct: 579 LDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDSEDSAR--LCAQRKHNQFMVFGKKFRYI 636
Query: 247 ELFPSTPDE 255
E+F + D+
Sbjct: 637 EVFQCSGDD 645
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FVS E
Sbjct: 292 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEH 351
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 352 RDMALKRHKHHIGARYIEVYRASGED 377
>gi|221040122|dbj|BAH11824.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 252
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 253 ASESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 354
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 7 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 66
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 67 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 125
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 126 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 164
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 165 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 273 AADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETH 332
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 333 EDAVAAMLKDRSHVHHRYIELF 354
>gi|170592721|ref|XP_001901113.1| Heterogeneous nuclear ribonucleoprotein H' [Brugia malayi]
gi|158591180|gb|EDP29793.1| Heterogeneous nuclear ribonucleoprotein H', putative [Brugia
malayi]
Length = 385
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 22/205 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFF--AGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQR 116
V++ RGLP++CT+ D+ +FF A I + L +++GR SGE FVVF+ +FAL +
Sbjct: 7 VMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGFVVFSSREDYDFALTK 66
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGS-PPPSRAKRYNDKDQMEHT 175
D++ +G+RYVE+ + E +Y+ D + GS P+ R T
Sbjct: 67 DKKYIGKRYVEL--------QQVSSMESDYDDS-DRRYGGSLADPNLPAR--------ET 109
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAM 234
I+++ GLP+ K EIV+FF+ +I + I + R GK GEA+V F+ E A +A+
Sbjct: 110 SIVRLAGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEARRA 259
K+K I RYV+++PS+ E RA
Sbjct: 170 AKNKEYIQHRYVDIYPSSYGEMLRA 194
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
PPP + +R+RGLP+ T+ DI FF L +DVL R SGEA V F +
Sbjct: 306 PPPEY-CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTDRPSGEAIVEFRNRADFD 364
Query: 112 FALQRDRQNMGRRYVEVF 129
A+QR+R MG RYVE+
Sbjct: 365 AAMQRNRNYMGSRYVELI 382
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 48 YGGGFPPPPSFP-----VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFS----G 98
YGG P + P +VRL GLP+ CT +I +FF L+I D +V R+S G
Sbjct: 95 YGGSLADP-NLPARETSIVRLAGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKG 153
Query: 99 EAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
EAFV F AL ++++ + RYV+++
Sbjct: 154 EAFVAFIDDESASKALAKNKEYIQHRYVDIY 184
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+ + +I+ FF+ + + D + +GEA VEF + + AM ++
Sbjct: 312 IRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQRN 370
Query: 238 KMTIGSRYVELFP 250
+ +GSRYVEL P
Sbjct: 371 RNYMGSRYVELIP 383
>gi|195056424|ref|XP_001995099.1| GH22967 [Drosophila grimshawi]
gi|193899305|gb|EDV98171.1| GH22967 [Drosophila grimshawi]
Length = 1007
Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 34/216 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGSRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI---------ACRPDGKATGEAYVEFVSV 227
I++MRGLP+ ++++FF E H+ +PDG+ATG+A+V F +
Sbjct: 381 IIRMRGLPYDCTPKQVLEFFTTG---ESPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 437
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
++ +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 438 CDSSKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 473
Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 58/252 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + +FF + ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDCTPKQVLEFFTTGESPCHVLDGNEGVLFVKKPDGRATGDAFVLFANECDS 440
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP----------- 159
AL R R+++G+RY+E+FR + + ++ + Y+++ H PP
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPK-TYESNNHSQPPLIAQLPTMQLP 499
Query: 160 -----------------PSRAKRYNDKDQMEHT-----------EILKMRGLPFSVKKSE 191
+ A N Q+ H +++RGLP+
Sbjct: 500 LLPQVGAAAGGHALNPLSANASHANLCPQLPHAPQHLITSGTTKNCIRLRGLPYEAMVEH 559
Query: 192 IVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK----MTIGS-- 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R + K M G
Sbjct: 560 ILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESARLCAQRKHNQFMVFGKKF 618
Query: 244 RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 RYIEVFQCSGDD 630
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FVS E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IGSRY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGSRYIEVYRASGED 358
>gi|344290717|ref|XP_003417084.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Loxodonta africana]
Length = 717
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VIRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E + + + +DQ+
Sbjct: 308 HKHHMGIRYIEVYKATGEEFVK-IAGGTSLEVV--------------RFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPADVLAFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + +G RY+ELF ST E ++ +R
Sbjct: 409 LRSXQGMLGKRYIELFRSTAAEVQQILNR 437
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 25/213 (11%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPADVLAFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL+ + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 408 ALRSXQGMLGKRYIELFRSTAAEVQQILNRYASS-SLLPTLTAPLLPIPFPLVAGTGRD- 465
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSV 227
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 466 -------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 518
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
E A A C K+ + RYVE+ P + +E R
Sbjct: 519 ERALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 550
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKTDVVDSETVIRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGIRYIEVYKATGEE 326
>gi|311262314|ref|XP_003129120.1| PREDICTED: G-rich sequence factor 1-like [Sus scrofa]
Length = 479
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEENEVNEDVRPMT 369
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 370 AFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 471
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + + N S P ND
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDV----------DALMKNLHVKSTPV-----VNDG----- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 143 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 202
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 203 QDVQKALEKHRMYMGQRYVEVY 224
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 393 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDA 452
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 453 VAAMLKDRSHVHHRYIELF 471
>gi|341899985|gb|EGT55920.1| hypothetical protein CAEBREN_28420 [Caenorhabditis brenneri]
Length = 591
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
PP VRLRGLPFN T+ DI +FF GL I V V GR +GEA+V F +
Sbjct: 61 PPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGKGM 120
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR+ M RY+E+F SE E + D G E
Sbjct: 121 ENDRKEMSSRYIEIFTVPE--------SEAELEFRPEPDGVG----------------EE 156
Query: 175 TEILKMRGLPFSVKKSEIVQFFK--DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
++++RG+P+S K+ +++QFF D E I P + +GEA+V F + A++
Sbjct: 157 NHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAAAEK 216
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAE 260
AM + +G+RYVE+F S+ E RA+
Sbjct: 217 AMEYNNRHMGTRYVEVFMSSMVEFNRAK 244
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 41 SGFQPYGYGGGFPPPPSFPV-VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSG 98
S + GYGG + P+ + +RGLP++ + FF+ L + L VN+ GR SG
Sbjct: 300 SSYNQGGYGGDYGRSNDDPLRIYMRGLPYDADQYAVEAFFSPLRCHSIKLGVNETGRPSG 359
Query: 99 EAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
+A F ++ L R+ Q MGRRYVE+F +
Sbjct: 360 DAIAEFDSFGDLQAGLSRNNQRMGRRYVELFDTR 393
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ + + FF + I + G+ +G+A EF S + + + ++
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRC--HSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRN 378
Query: 238 KMTIGSRYVELF 249
+G RYVELF
Sbjct: 379 NQRMGRRYVELF 390
>gi|410957462|ref|XP_003985346.1| PREDICTED: G-rich sequence factor 1 [Felis catus]
Length = 361
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 105/223 (47%), Gaps = 35/223 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS------------------------EVNYEGIYDND 153
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSPTAKYITEPEMVFEEHEVNEDIRPMTA 252
Query: 154 FHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
F K ++K + MRGLPF +I+ FF K + +I
Sbjct: 253 FESEKEIELPKEMSEKLPEAVDFGTPSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RI 310
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ +GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 TMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D +A+ + + SP ND
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS--------SPA------VNDG----- 132
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 133 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 189
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 190 LKHREEIGNRYIEIFPSRRNEVR 212
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F P S V +RGLPF DI FFA L V + + + NG+ +GEA V F
Sbjct: 275 FGTPSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDA 334
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 335 VAAMLKDRSHVHHRYIELF 353
>gi|338723562|ref|XP_001489151.2| PREDICTED: g-rich sequence factor 1 [Equus caballus]
Length = 362
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSLTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 149 IYDNDFHGSPPPSRAKRY---NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P +++ D + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEVELPKEMSEKLPETADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 354
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PP P + V +R +GLP++CT D+ FF+ I +
Sbjct: 7 YLEDLPPLPEYEVAPSKLGQDVDDVYLIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHF 66
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 67 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 125
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 126 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 164
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 165 DYRGRRK-TGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPI 108
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 274 ADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHE 333
Query: 109 QVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 334 DAVAAMLKDRSHVHHRYIELF 354
>gi|349603147|gb|AEP99067.1| G-rich sequence factor 1-like protein, partial [Equus caballus]
Length = 361
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 191
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 192 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSLTAKYITEPEMVFEEHEVNEDIRPMT 251
Query: 149 IYDNDFHGSPPPSRAKRY---NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P +++ D + MRGLPF +I+ FF K + +
Sbjct: 252 AFESEKEVELPKEMSEKLPETADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 309
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 310 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PP P + V +R +GLP++CT D+ FF+ I +
Sbjct: 6 YLEDLPPLPEYEVAPSKLGQDVDDVYLIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHF 65
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 66 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 124
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 125 --------SPV------VNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 163
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 164 DYRGRRK-TGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEVR 211
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPI 108
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 273 ADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHE 332
Query: 109 QVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 333 DAVAAMLKDRSHVHHRYIELF 353
>gi|341882686|gb|EGT38621.1| hypothetical protein CAEBREN_04314 [Caenorhabditis brenneri]
Length = 591
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
PP VRLRGLPFN T+ DI +FF GL I V V GR +GEA+V F +
Sbjct: 61 PPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGKGM 120
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR+ M RY+E+F SE E + D G E
Sbjct: 121 ENDRKEMSSRYIEIFTVPE--------SEAELEFRPEPDGVG----------------EE 156
Query: 175 TEILKMRGLPFSVKKSEIVQFFK--DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
++++RG+P+S K+ +++QFF D E I P + +GEA+V F + A++
Sbjct: 157 NHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAAAEK 216
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAE 260
AM + +G+RYVE+F S+ E RA+
Sbjct: 217 AMEYNNRHMGTRYVEVFMSSMVEFNRAK 244
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 41 SGFQPYGYGGGFPPPPSFPV-VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSG 98
S + GYGG + P+ + +RGLP++ + FF+ L + L VN+ GR SG
Sbjct: 300 SSYNQGGYGGDYGRSNDDPLRIYMRGLPYDADQYAVEAFFSPLRCHSIKLGVNETGRPSG 359
Query: 99 EAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
+A F ++ L R+ Q MGRRYVE+F +
Sbjct: 360 DAIAEFDSFGDLQAGLSRNNQRMGRRYVELFDTR 393
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ + + FF + I + G+ +G+A EF S + + + ++
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRC--HSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRN 378
Query: 238 KMTIGSRYVELF 249
+G RYVELF
Sbjct: 379 NQRMGRRYVELF 390
>gi|326517396|dbj|BAK00065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 76/115 (66%), Gaps = 14/115 (12%)
Query: 22 SKRQRMMEPNP-YFAVSSSASG-----FQPYGYGGGFPPPP-------SFPVVRLRGLPF 68
SKR RMMEP P YFA S++G F P YGG +FP VRLRGLPF
Sbjct: 55 SKRARMMEPGPPYFAGMGSSAGGSGSSFYP-SYGGNLAGAAGVNSGIQNFPAVRLRGLPF 113
Query: 69 NCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGR 123
+C D+DI KFF+GLDIVD LLV+KNGRFSGEAFVVF +Q EFAL R+++ R
Sbjct: 114 DCEDVDISKFFSGLDIVDCLLVHKNGRFSGEAFVVFPSSMQAEFALHRNKRESSR 168
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++ +++RGLPF + +I +FF I++ + +G+ +GEA+V F S +A+
Sbjct: 100 IQNFPAVRLRGLPFDCEDVDISKFFSGLDIVD---CLLVHKNGRFSGEAFVVFPSSMQAE 156
Query: 232 RAMCKDK 238
A+ ++K
Sbjct: 157 FALHRNK 163
>gi|151555768|gb|AAI49234.1| GRSF1 protein [Bos taurus]
Length = 362
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 106/227 (46%), Gaps = 36/227 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEMSEKIPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I + GKATGEA V F + E+A AM KD+ + RY+ELF ++
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S H P M +
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LHVKSAP-----------MVN 130
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 131 DGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMASQAL 189
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 190 LKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 276 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDA 335
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 336 VAAMLKDRSHVHHRYIELF 354
>gi|440905001|gb|ELR55451.1| G-rich sequence factor 1, partial [Bos grunniens mutus]
Length = 362
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 106/227 (46%), Gaps = 36/227 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYEGIYDN 152
R+ +G RY+E+F +R + V S EVN +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 153 DFHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 253 AFESEKEIELPKEMSEKIPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 310
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I + GKATGEA V F + E+A AM KD+ + RY+ELF ++
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S H P M +
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LHVKSAP-----------MVN 130
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 131 DGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMASQAL 189
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 190 LKHREEIGNRYIEIFPSRRNEVR 212
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
F S V +RGLPF DI FFA L V + + + +G+ +GEA V F
Sbjct: 276 FGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDA 335
Query: 111 EFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 336 VAAMLKDRSHVHHRYIELF 354
>gi|355756893|gb|EHH60501.1| hypothetical protein EGM_11873, partial [Macaca fascicularis]
Length = 635
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 166 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 225
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 226 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 266
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 267 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 326
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 327 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 355
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ +D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 267 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 326
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 327 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 383
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 384 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 440
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A K + RYVE+ P + +E R
Sbjct: 441 ATAQRCHKKVMKERYVEVVPCSTEEMSR 468
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 154 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 213
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 214 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 244
>gi|297284292|ref|XP_002802581.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 2
[Macaca mulatta]
Length = 725
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 256 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 315
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 316 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 356
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 357 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 416
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 417 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 445
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ +D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 357 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 416
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 417 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 473
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 474 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 530
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A K + RYVE+ P + +E R
Sbjct: 531 ATAQRCHKKVMKERYVEVVPCSTEEMSR 558
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 244 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 303
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 304 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 334
>gi|109128999|ref|XP_001098015.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 1
[Macaca mulatta]
Length = 715
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 306 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 347 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ +D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 347 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 463
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 464 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A K + RYVE+ P + +E R
Sbjct: 521 ATAQRCHKKVMKERYVEVVPCSTEEMSR 548
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 236 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 295
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 296 SEQRDLALQRHKHHMGVRYIEVYKATGEE 324
>gi|355710319|gb|EHH31783.1| hypothetical protein EGK_12921, partial [Macaca mulatta]
Length = 688
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 219 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 278
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 279 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 319
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 320 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 379
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 380 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 408
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ +D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 320 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 379
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 380 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 436
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 437 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 493
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A K + RYVE+ P + +E R
Sbjct: 494 ATAQRCHKKVMKERYVEVVPCSTEEMSR 521
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 207 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 266
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 267 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 297
>gi|402908823|ref|XP_003917134.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Papio anubis]
Length = 725
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 256 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 315
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 316 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 356
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 357 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 416
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 417 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 445
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ +D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 357 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 416
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 417 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 473
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 474 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 530
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A K + RYVE+ P + +E R
Sbjct: 531 ATAQRCHKKVMKERYVEVVPCSTEEMSR 558
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 244 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 303
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 304 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 334
>gi|195124401|ref|XP_002006681.1| GI18454 [Drosophila mojavensis]
gi|193911749|gb|EDW10616.1| GI18454 [Drosophila mojavensis]
Length = 1008
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 34/216 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 303 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 362
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 363 HKHHIGSRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 403
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI---------ACRPDGKATGEAYVEFVSV 227
I++MRGLP+ ++++FF E H+ +PDG+ATG+A+V F +
Sbjct: 404 IIRMRGLPYDCTPKQVLEFFTTG---ESPCHVLDGSEGVLFVKKPDGRATGDAFVLFANE 460
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
++ +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 461 SDSPKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 496
Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 59/252 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + +FF + ++D VL V K +GR +G+AFV+FA
Sbjct: 404 IIRMRGLPYDCTPKQVLEFFTTGESPCHVLDGSEGVLFVKKPDGRATGDAFVLFANESDS 463
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP----------- 159
AL R R+++G+RY+E+FR + + ++ + Y+++ HG PP
Sbjct: 464 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPK-TYESNNHGQPPLIAQLPTMQLP 522
Query: 160 ----------------PSRAKRYNDKDQMEHT-----------EILKMRGLPFSVKKSEI 192
+ A N + H +++RGLP+ I
Sbjct: 523 LLPQVGAAAGHALNPLTANASHANLCPPLTHAPQHLITSGTTKNCIRLRGLPYEAMVEHI 582
Query: 193 VQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS-- 243
+ F D+ II +H+ G+ +GEA+++ S + A+ +C + M G
Sbjct: 583 LHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDSEDSAR--LCAQRKHNQFMVFGKKF 640
Query: 244 RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 641 RYIEVFQCSGDD 652
Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FVS E
Sbjct: 296 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEH 355
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IGSRY+E++ ++ ++
Sbjct: 356 RDMALKRHKHHIGSRYIEVYRASGED 381
>gi|194756410|ref|XP_001960472.1| GF13378 [Drosophila ananassae]
gi|190621770|gb|EDV37294.1| GF13378 [Drosophila ananassae]
Length = 885
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 111/214 (51%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 283 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFISQEHRDMALKR 342
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 343 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 383
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F +
Sbjct: 384 IIRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 443
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 444 AAKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 477
Score = 83.6 bits (205), Expect = 8e-14, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++CT + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 384 IIRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 443
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
AL R R+++G+RY+E+FR + + ++ + Y++ + S PP A+ +
Sbjct: 444 AAKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKN-YESGGNHSQPPLIAQLPTMQ 502
Query: 170 DQM--EH-------TEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATG 218
+ +H +++RGLP+ I+ F + II +H+ G+ +G
Sbjct: 503 LPLLPQHLITSGTTRNCIRLRGLPYEAMVEHILHFLDGFAKHIIYQGVHMVINAQGQPSG 562
Query: 219 EAYVEFVSVEEAKRAMCKDK-----MTIGS--RYVELFPSTPDE 255
EA+++ S + A+ +C + M G RY+E+F + D+
Sbjct: 563 EAFIQMDSEDSAR--LCAQRKHNQFMVFGKKFRYIEVFQCSGDD 604
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + F+S E
Sbjct: 276 DEIDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFISQEH 335
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 336 RDMALKRHKHHIGTRYIEVYRASGED 361
>gi|402908821|ref|XP_003917133.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Papio anubis]
Length = 715
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 306 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 347 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ +D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 347 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 463
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 464 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A K + RYVE+ P + +E R
Sbjct: 521 ATAQRCHKKVMKERYVEVVPCSTEEMSR 548
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + FV
Sbjct: 236 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVD 295
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 296 SEQRDLALQRHKHHMGVRYIEVYKATGEE 324
>gi|226487870|emb|CAX75600.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 278
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 28/202 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ E A+
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++MGRRY+EVF ++ NA+ S + ++ ++ EH
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAMGS---------------------RPFSSPNRREH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+ +K EI FF +I + I + G+ TGEAYV+F S E RA
Sbjct: 103 --VVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAK 160
Query: 235 CKDKMTIGSRYVELFPSTPDEA 256
K IG RY+E+F ST EA
Sbjct: 161 EKHMEKIGHRYIEIFESTMLEA 182
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPFS +I+ FFKD I K I+ P+G++ GEA++E S ++ ++AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 235 CKDKMTIGSRYVELFPSTPDEARRA 259
+G RY+E+F S +E A
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNA 88
>gi|47222987|emb|CAF99143.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 27/191 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+G I++ + GR SGEAFV ++ A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVAV 66
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ N E + G P A
Sbjct: 67 KKDRETMGHRYVEVFKSN------------NVEMDWVMKHTGPNCPGTAG---------- 104
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S + A++A+
Sbjct: 105 DGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKAL 164
Query: 235 CKDKMTIGSRY 245
K K IG R+
Sbjct: 165 KKHKERIGHRW 175
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 60/241 (24%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++RLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 107 LIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 117 DRQNMGRRY--------------VEVFRCKRQD---YYNAVASEVNYE--GIYDNDFHGS 157
++ +G R+ + +F+ R + +Y + + G YD
Sbjct: 167 HKERIGHRWGCVLTAACVCSHGTLRLFKSSRAEVRTHYEPQRKPMGMQRPGPYDR----- 221
Query: 158 PPPSRAKRYN---------DKDQMEHT--------------------EILKMRGLPFSVK 188
PS + YN D+M + MRGLP+
Sbjct: 222 --PSGGRGYNMMGRGGGGGSYDRMRRGGYGGDGRYGDGGSSFQSTTGHCVHMRGLPYRAT 279
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+++I FF + ++HI PDG+ TGEA VEF + E+A AM KDK + RYVEL
Sbjct: 280 ETDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVEL 337
Query: 249 F 249
F
Sbjct: 338 F 338
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S E+ +FF KI+ + IH +G+ +GEA+VE + ++ K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVAV 66
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 67 KKDRETMGHRYVEVFKSNNVE 87
>gi|355693777|gb|AER99447.1| G-rich RNA sequence binding factor 1 [Mustela putorius furo]
Length = 360
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 191
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS------------------EVNYE-----------G 148
R+ +G RY+E+F +R + V S E+ +E
Sbjct: 192 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMVFEEHEVSEDIRPMT 251
Query: 149 IYDNDFHGSPPPSRAKRY---NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P +++ D + MRGLPF +I+ FF K + +
Sbjct: 252 AFESEKEIELPKEMSEKLPEAADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 309
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + +GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 310 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 32 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D +A+ + + SP ND
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKA--------SPV------VNDG----- 131
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 132 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 188
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 189 LKHREEIGNRYIEIFPSRRNEVR 211
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 49 GGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGP 107
F S V +RGLPF DI FFA L V + + + NG+ +GEA V F
Sbjct: 272 AADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTH 331
Query: 108 IQVEFALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 332 EDAVAAMLKDRSHVHHRYIELF 353
>gi|340386110|ref|XP_003391551.1| PREDICTED: epithelial splicing regulatory protein 1-like, partial
[Amphimedon queenslandica]
Length = 541
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ DI F +GL+I+ V +N GR +GEA VV G Q +FALQR
Sbjct: 173 VVRLRGLPFSADHNDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQAQFALQR 232
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
DR + +RYVEV+ +++ + + E ++
Sbjct: 233 DRHYLHQRYVEVYEASPDNFFQFCDTTGSSEKVF-------------------------- 266
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++M+GLP+ +S+I++FF+ + D I I PDGKA+G+A+ F S + A
Sbjct: 267 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 326
Query: 234 MCKDKMTIGSRYVELFPSTPDE 255
+ K + + RY+E+F S+ E
Sbjct: 327 LKKHRNNLMGRYIEVFHSSLKE 348
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 21/210 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
VR++GLP+ T+ DI +FF V D +L+ + +G+ SG+AF VF+ VE A
Sbjct: 267 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 326
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASE-----------VNYEGIYDNDFHGSPPPSR 162
L++ R N+ RY+EVF +++ + +N E
Sbjct: 327 LKKHRNNLMGRYIEVFHSSLKEFLVVLNKSGTPEQLDRFAYLNTESGGGGGGGRGGGGGS 386
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEA 220
+ + E +K+RGLP+ +++ FF D I + IH+ + TG+
Sbjct: 387 GGGASKRGGSEKN-CVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDC 445
Query: 221 YVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249
+V+ SV+ A RA + + IG RY+E+F
Sbjct: 446 FVQMTSVDAATRAANELHRQNIGRRYIEVF 475
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAG-PIQVEFAL 114
V+LRGLP+ T D+ FF L+ +++N R +G+ FV A
Sbjct: 401 VKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQMTSVDAATRAAN 460
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ RQN+GRRY+EVF+ D A+ KR +
Sbjct: 461 ELHRQNIGRRYIEVFQVSGNDVTYALMDTGGGGSRPGGGHAYYGGGGGNKR-----KKVS 515
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYK 200
+ ++K RGLPF+ K+ ++V FF D+
Sbjct: 516 SAVVKARGLPFNTKEYDLVDFFADFN 541
>gi|340372253|ref|XP_003384659.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Amphimedon queenslandica]
Length = 848
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF+ DI F +GL+I+ V +N GR +GEA VV G Q +FALQR
Sbjct: 213 VVRLRGLPFSADHNDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQAQFALQR 272
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
DR + +RYVEV+ +++ + + E ++
Sbjct: 273 DRHYLHQRYVEVYEASPDNFFQFCDTTGSSEKVF-------------------------- 306
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++M+GLP+ +S+I++FF+ + D I I PDGKA+G+A+ F S + A
Sbjct: 307 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 366
Query: 234 MCKDKMTIGSRYVELFPSTPDE 255
+ K + + RY+E+F S+ E
Sbjct: 367 LKKHRNNLMGRYIEVFHSSLKE 388
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFA----GLDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
VR++GLP+ T+ DI +FF + D +L+ + +G+ SG+AF VF+ VE A
Sbjct: 307 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 366
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++ R N+ RY+EVF +++ + E + G + + ++K+
Sbjct: 367 LKKHRNNLMGRYIEVFHSSLKEFLVVLNKSGTPEQLDRGGGGGGSGGASKRGGSEKN--- 423
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+K+RGLP+ +++ FF D I + IH+ + TG+ +V+ SV+ A
Sbjct: 424 ---CVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQMTSVDAAT 480
Query: 232 RAMCK-DKMTIGSRYVELFPSTPDEARRA 259
RA + + IG RY+E+F + ++ A
Sbjct: 481 RAANELHRQNIGRRYIEVFQVSGNDVTYA 509
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAG-PIQVEFAL 114
V+LRGLP+ T D+ FF L+ +++N R +G+ FV A
Sbjct: 425 VKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQMTSVDAATRAAN 484
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ RQN+GRRY+EVF+ D A+ +K +
Sbjct: 485 ELHRQNIGRRYIEVFQVSGNDVTYALMDTGGGSRPG------GGHAYYGGGGGNKRKKVS 538
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ ++K RGLPF+ K+ ++V FF D+ + E I + +G++TG AY+ F S+ +A++A+
Sbjct: 539 SAVVKARGLPFNTKEYDLVDFFADFNVDESDIELIYNHNGRSTGVAYINFQSLNDARQAV 598
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFA--GLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFA 113
S VV+ RGLPFN + D+ FFA +D D+ L+ N NGR +G A++ F +
Sbjct: 538 SSAVVKARGLPFNTKEYDLVDFFADFNVDESDIELIYNHNGRSTGVAYINFQ-------S 590
Query: 114 LQRDRQ---NMGRRYV------EVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK 164
L RQ ++ +Y+ + R N + G+ + + PS
Sbjct: 591 LNDARQAVRDLNHKYIGHHKPSSLKRVSSSPVSNYRLVNFSNRGLKRD--CSTATPSGEA 648
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYV 222
+Q L ++G+P+ ++ FF D I+ED IH+ G++TG+ V
Sbjct: 649 EGESVNQGVIQNCLLLKGIPWETTVDKVTAFFGDLSSNIVEDGIHLLYDKFGQSTGQCIV 708
Query: 223 EFVSVEEAKRAM-CKDKMTIGSRYVELFPST 252
+ A+ ++ +G+RYV+L P +
Sbjct: 709 HMTDAASVQNAVGMLNRHYLGNRYVDLIPCS 739
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 LRGLPFNCTDIDICKFFAGL--DIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFAL-QR 116
L+G+P+ T + FF L +IV+ LL +K G+ +G+ V V+ A+
Sbjct: 664 LKGIPWETTVDKVTAFFGDLSSNIVEDGIHLLYDKFGQSTGQCIVHMTDAASVQNAVGML 723
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEH 174
+R +G RYV++ C NY Y + +DK +++
Sbjct: 724 NRHYLGNRYVDLIPCS------------NYYAKYQVARMKRDNIKSTESIDDKKLNRLTP 771
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
I+K GLPFS +++V FF ++ + I+I ++ G A+V F S +A A+
Sbjct: 772 LTIIKAGGLPFSANVTDLVNFFVEFNVPASNINIVYDGTNRSVGIAFVGFQSRSDAVDAV 831
Query: 235 CK-DKMTIGSRYVEL 248
K D+ IG RYV+L
Sbjct: 832 KKLDREYIGRRYVDL 846
>gi|395853861|ref|XP_003799417.1| PREDICTED: epithelial splicing regulatory protein 2 [Otolemur
garnettii]
Length = 715
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 306 HKHHMGIRYIEVYKATGEEFVK-IAGGTSIE--------------VARFLSREDQV---- 346
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS +++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 347 ILRLRGLPFSAGPPDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+E+F ST E ++ +R
Sbjct: 407 LRRHKGMLGKRYIEIFRSTAAEVQQVLNR 435
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 347 ILRLRGLPFSAGPPDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L+R + +G+RY+E+FR + Q N AS + P P A D
Sbjct: 407 LRRHKGMLGKRYIEIFRSTAAEVQQVLNRYASSPLLPTLTAPLLP-IPFPLAAGTGRD-- 463
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E
Sbjct: 464 ------CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAE 517
Query: 229 EAKRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A A C K+ + RYVE+ P + +E R
Sbjct: 518 RALAAAQRCHKKV-MKERYVEVVPCSTEEMSR 548
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 236 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 295
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 296 SEQRDLALQRHKHHMGIRYIEVYKATGEE 324
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G VD+ +++N+ GR SG+AF+ + A
Sbjct: 465 VRLRGLPYTATIEDILSFL-GEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 523
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNA-VASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + + G+ SPPP +
Sbjct: 524 QRCHKKVMKERYVEVVPCSTEEMSRVLIGGTLGRSGM-------SPPPCK 566
>gi|444709335|gb|ELW50356.1| Epithelial splicing regulatory protein 2 [Tupaia chinensis]
Length = 848
Score = 106 bits (265), Expect = 9e-21, Method: Composition-based stats.
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 379 VVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 438
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ G A+ + +DQ+
Sbjct: 439 HKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV---- 479
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F D + + + PDG+ TG+A+ F E A+ A
Sbjct: 480 ILRLRGLPFSAGPTDVLGFLGPDCPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 539
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++A +R
Sbjct: 540 LRRHKGMLGKRYIELFRSTAAEVQQALTR 568
Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFA----------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQ 109
++RLRGLPF+ D+ F GL + + + +GR +G+AF +FA
Sbjct: 480 ILRLRGLPFSAGPTDVLGFLGPDCPVTGGAEGL----LFVRHPDGRPTGDAFALFACEEL 535
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
+ AL+R + +G+RY+E+FR + A+ + + P P +
Sbjct: 536 AQAALRRHKGMLGKRYIELFRSTAAEVQQALTRYASSPLLPTLTAPLLPIPFPLAAGTGR 595
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSV 227
D +++RGLP++ +I+ F + I +H+ G+ +G+A+++ S
Sbjct: 596 D------CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSA 649
Query: 228 EEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258
E A A + K + RYVE+ P + +E R
Sbjct: 650 ERALAAAQRCHKKVMKERYVEVVPCSTEEMSR 681
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++ +++ RGLP+ ++ +FF+ I + + G+ GEA + FV E+
Sbjct: 372 DVVDSETVVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFVDSEQ 431
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 432 RDLALQRHKHHMGVRYIEVYKATGEE 457
>gi|195381217|ref|XP_002049351.1| GJ21539 [Drosophila virilis]
gi|194144148|gb|EDW60544.1| GJ21539 [Drosophila virilis]
Length = 982
Score = 106 bits (265), Expect = 9e-21, Method: Composition-based stats.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGSRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII------EDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF + + + +PDG+ATG+A+V F + ++
Sbjct: 381 IIRMRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANESDS 440
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 473
Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 59/252 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + FF A ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANESDS 440
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP----------- 159
AL R R+++G+RY+E+FR + + ++ + Y+++ HG PP
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPK-TYESNNHGQPPLIAQLPTMQLP 499
Query: 160 ----------------PSRAKRYNDKDQMEHT-----------EILKMRGLPFSVKKSEI 192
+ A N Q+ H +++RGLP+ I
Sbjct: 500 LLPQVGAAAGHALNPLTANASHANLCPQLTHAPQHLITSGTTKNCIRLRGLPYEAMVEHI 559
Query: 193 VQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS-- 243
+ F D+ II +H+ G+ +GEA+++ S + A+ +C + M G
Sbjct: 560 LHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDSEDSAR--LCAQRKHNQFMVFGKKF 617
Query: 244 RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 618 RYIEVFQCSGDD 629
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FVS E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IGSRY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGSRYIEVYRASGED 358
>gi|24653901|ref|NP_725479.1| fusilli, isoform C [Drosophila melanogaster]
gi|21645394|gb|AAM70980.1| fusilli, isoform C [Drosophila melanogaster]
Length = 891
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 73.6 bits (179), Expect = 8e-11, Method: Composition-based stats.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR + Q N NYE
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEIL----------KMRGLPFSVKKS 190
G + + G+ P + T+ L ++RGLP+
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 618
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 KYRYIEVFQCSGDD 632
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
>gi|281363439|ref|NP_001163161.1| fusilli, isoform G [Drosophila melanogaster]
gi|272432494|gb|ACZ94433.1| fusilli, isoform G [Drosophila melanogaster]
Length = 860
Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 84.0 bits (206), Expect = 6e-14, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 33/225 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------- 159
AL R R+++G+RY+E+FR + + ++ + H PP
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKAT 217
P + ++ +++RGLP+ I+ F D+ II +H+ G+ +
Sbjct: 501 PLLPQHLITSGTTKNC--IRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPS 558
Query: 218 GEAYVEFVSVEEAKRAMCKDK-----MTIGS--RYVELFPSTPDE 255
GEA+++ + +EE+ R +C + M G RY+E+F + D+
Sbjct: 559 GEAFIQ-MDLEESAR-LCAQRRHNHYMMFGKKYRYIEVFQCSGDD 601
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
>gi|347968776|ref|XP_312018.5| AGAP002892-PA [Anopheles gambiae str. PEST]
gi|333467847|gb|EAA08189.6| AGAP002892-PA [Anopheles gambiae str. PEST]
Length = 589
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 37/227 (16%)
Query: 49 GGGFPPP------PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV--NKNGRFSGEA 100
GGG P P P + VRLRGLP++ T+ +I F G++I+ V + + R +GEA
Sbjct: 40 GGGGPVPEDDGNQPHY--VRLRGLPWSITEDEIRSFLHGVNILHVHICFHPQTKRQTGEA 97
Query: 101 FVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP 160
++ A R++Q +G RY+E F + + A+ D G P
Sbjct: 98 YIRVPTQADRNKAFSRNKQTIGHRYIEFFNATEEQFEMALQE-------MDEGESGGP-- 148
Query: 161 SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATG 218
++KMRGLP++ K ++ FF+ I + I + G+A+G
Sbjct: 149 ----------------VVKMRGLPWTSTKDDVKAFFQGLTIKNGYNGILLLLDNLGRASG 192
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
EA VEF + +A+ AM K K IG+RY+ELF S E RRAE R R+
Sbjct: 193 EAIVEFATEADAETAMGKHKEKIGNRYIELFRSNTGEMRRAEKRMRR 239
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
P+ V +RG+PF+C + D+ FF L V V+ +N R SGE F + A+
Sbjct: 478 PNLYCVHMRGMPFSCDEQDMYDFFMPLRPVKCVVQMNSRKRPSGEGDAYFETKEEAIKAM 537
Query: 115 QRDRQNMGRRYVEVFRCKRQ 134
++D++ MG RY+E+F +RQ
Sbjct: 538 RKDKEKMGSRYIELFAGQRQ 557
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRG+PFS + ++ FF + ++ + + R G+AY F + EEA +AM KD
Sbjct: 483 VHMRGMPFSCDEQDMYDFFMPLRPVKCVVQMNSRKRPSGEGDAY--FETKEEAIKAMRKD 540
Query: 238 KMTIGSRYVELF 249
K +GSRY+ELF
Sbjct: 541 KEKMGSRYIELF 552
>gi|17865825|ref|NP_524691.1| fusilli, isoform D [Drosophila melanogaster]
gi|24653906|ref|NP_725481.1| fusilli, isoform E [Drosophila melanogaster]
gi|24653908|ref|NP_725482.1| fusilli, isoform F [Drosophila melanogaster]
gi|75021514|sp|Q9BJZ5.1|FUSIL_DROME RecName: Full=RNA-binding protein fusilli
gi|13183640|gb|AAK15280.1|AF321979_1 fusilli [Drosophila melanogaster]
gi|21645395|gb|AAM70981.1| fusilli, isoform D [Drosophila melanogaster]
gi|21645396|gb|AAM70982.1| fusilli, isoform E [Drosophila melanogaster]
gi|21645397|gb|AAM70983.1| fusilli, isoform F [Drosophila melanogaster]
Length = 967
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR + Q N NYE
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEIL----------KMRGLPFSVKKS 190
G + + G+ P + T+ L ++RGLP+
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 618
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 KYRYIEVFQCSGDD 632
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
>gi|395521348|ref|XP_003764780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 304
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ D+ FF+G I + + + + GR SGEAFV +VE AL
Sbjct: 11 VVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHFIYTREGRPSGEAFVELESEEEVELAL 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R+ M RYVEVFR NAV + + N SP P+
Sbjct: 71 KKHRETMAHRYVEVFRS------NAVEMDWTLKRTAPN----SPDPAG------------ 108
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF+ K +IVQFF +I+ + I + G+ +GEA+V+F S E A++A+
Sbjct: 109 DGYVRLRGLPFNCNKEDIVQFFSGLEIMPNGIMLQVDFRGRNSGEAFVQFASQEIAEKAL 168
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K +G RY+E+F S+ E
Sbjct: 169 KKHKERMGHRYIEIFKSSQAEVH 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P P VRLRGLPFNC DI +FF+GL+I+ +L V+ GR SGEAFV FA
Sbjct: 104 PDPAGDGYVRLRGLPFNCNKEDIVQFFSGLEIMPNGIMLQVDFRGRNSGEAFVQFASQEI 163
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYN 138
E AL++ ++ MG RY+E+F+ + + +
Sbjct: 164 AEKALKKHKERMGHRYIEIFKSSQAEVHT 192
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED--KIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S S++ FF +I IH +G+ +GEA+VE S EE + A+
Sbjct: 11 VVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHFIYTREGRPSGEAFVELESEEEVELAL 70
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRS 263
K + T+ RYVE+F S E R+
Sbjct: 71 KKHRETMAHRYVEVFRSNAVEMDWTLKRT 99
>gi|195442063|ref|XP_002068780.1| GK17961 [Drosophila willistoni]
gi|194164865|gb|EDW79766.1| GK17961 [Drosophila willistoni]
Length = 864
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 295 IVRARGLPWQSSDQDIAKFFCGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 354
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 355 HKHHIGARYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 395
Query: 177 ILKMRGLPFSVKKSEIVQFF----KDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F +A
Sbjct: 396 IIRMRGLPYDCTAKQVLDFFTTGDSPCSVLDGTEGVLFVKKPDGRATGDAFVLFALEADA 455
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 456 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 488
Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 50/244 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD----IVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 396 IIRMRGLPYDCTAKQVLDFFTTGDSPCSVLDGTEGVLFVKKPDGRATGDAFVLFALEADA 455
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP----------- 159
AL R R+++G+RY+E+FR + + ++ + N+ H PP
Sbjct: 456 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYEANNSHSQPPLIAQLPQMQLP 515
Query: 160 ------------PSRAKRYNDKDQMEH-------TEILKMRGLPFSVKKSEIVQFFKDY- 199
A +H +++RGLP+ I+ F D+
Sbjct: 516 LLPQVGAIAIAGHGHANPLCPIPPPQHLITSGTIKNCIRLRGLPYEAMVEHILHFLDDFA 575
Query: 200 -KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS--RYVELFPS 251
II +H+ G+ +GEA+++ S + A+ +C + M G RY+E+F
Sbjct: 576 KHIIYQGVHMVINAQGQPSGEAFIQMDSEDSAR--LCAQRKHNQFMVFGKKFRYIEVFQC 633
Query: 252 TPDE 255
+ D+
Sbjct: 634 SGDD 637
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF + + + + P G+ GEA + FVS E
Sbjct: 288 DEIDGNCIVRARGLPWQSSDQDIAKFFCGLNVAKGGVALCLSPLGRRNGEALIRFVSQEH 347
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 348 RDMALKRHKHHIGARYIEVYRASGED 373
>gi|224002324|ref|XP_002290834.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974256|gb|EED92586.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 387
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
FP VR+RGLPF T D+ FF GL ++DV+LV SGEAFVVFA P+ + LQRD
Sbjct: 91 FPCVRVRGLPFEATLEDVLVFFQGLVVIDVVLVPH--AESGEAFVVFANPMDFQMGLQRD 148
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNY----EGIYDN 152
Q+MGRRY+EVF+ KR DYY A+AS+ ++ EG+ +N
Sbjct: 149 HQSMGRRYLEVFQGKRSDYYAAIASQNHHWQGGEGLLNN 187
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%)
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
HT +++RGLPF K +I+ FF++Y IE + + R DG++TGE YV F ++AK A
Sbjct: 295 HTGYVRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAKEA 354
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRS 263
M + TIGSRY+ELF S +E R +RS
Sbjct: 355 MALHRSTIGSRYIELFISNKEEHARNVARS 384
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF + DI FF + ++ VLL + +GR +GE +V F + A+
Sbjct: 299 VRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAKEAMALH 358
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVA 141
R +G RY+E+F ++++ VA
Sbjct: 359 RSTIGSRYIELFISNKEEHARNVA 382
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF +++ FF+ +I+ + P + +GEA+V F + + + + +D
Sbjct: 94 VRVRGLPFEATLEDVLVFFQGLVVID----VVLVPHAE-SGEAFVVFANPMDFQMGLQRD 148
Query: 238 KMTIGSRYVELF 249
++G RY+E+F
Sbjct: 149 HQSMGRRYLEVF 160
>gi|195334671|ref|XP_002034000.1| GM20128 [Drosophila sechellia]
gi|194125970|gb|EDW48013.1| GM20128 [Drosophila sechellia]
Length = 885
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 273 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 332
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 333 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 373
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F + +
Sbjct: 374 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 433
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 434 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 467
Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 66/254 (25%), Positives = 109/254 (42%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 374 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 433
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR + Q N NYE
Sbjct: 434 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 493
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEILKMRG----------LPFSVKKS 190
G + + G+ P + T+ L G LP+
Sbjct: 494 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 553
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 554 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHHHYMMFGK 611
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 612 KYRYIEVFQCSGDD 625
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 266 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 325
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 326 RDMALKRHKHHIGTRYIEVYRASGED 351
>gi|157111783|ref|XP_001651726.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878304|gb|EAT42529.1| AAEL005947-PA [Aedes aegypti]
Length = 471
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 29/209 (13%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI--VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+RLRGLP+N T+ DI F +G++I V + + R +GEA++ AL +++
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+G RY+EVF + AV E + E G P +L
Sbjct: 84 ATLGHRYIEVFTASDDQFDKAVNREESAE-------DGGP------------------VL 118
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSVEEAKRAMCK 236
+MRGLP+S ++ +FF I I D G+A+GEA VEF + EA +AM K
Sbjct: 119 RMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQAMSK 178
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
K IG+RY+ELF S+ E + AE+R R+
Sbjct: 179 QKEKIGNRYIELFRSSTREMKWAENRLRR 207
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ +RG+PFS + +I FF + + K +++ G+ +GE F ++EEA +AM K
Sbjct: 390 VHLRGMPFSCDEQDIYDFFMPLRPV--KCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKH 447
Query: 238 KMTIGSRYVELFPSTPDEARRAESR 262
K +GSRY+ELF + RR +S+
Sbjct: 448 KEKMGSRYIELFAGS----RRPQSK 468
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V LRG+PF+C + DI FF L V + + GR SGE F + A+++ ++
Sbjct: 390 VHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHKE 449
Query: 120 NMGRRYVEVFRCKRQ 134
MG RY+E+F R+
Sbjct: 450 KMGSRYIELFAGSRR 464
>gi|157111781|ref|XP_001651725.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878303|gb|EAT42528.1| AAEL005947-PB [Aedes aegypti]
Length = 491
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 29/209 (13%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI--VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+RLRGLP+N T+ DI F +G++I V + + R +GEA++ AL +++
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+G RY+EVF + AV E + E G P +L
Sbjct: 84 ATLGHRYIEVFTASDDQFDKAVNREESAE-------DGGP------------------VL 118
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSVEEAKRAMCK 236
+MRGLP+S ++ +FF I I D G+A+GEA VEF + EA +AM K
Sbjct: 119 RMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQAMSK 178
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
K IG+RY+ELF S+ E + AE+R R+
Sbjct: 179 QKEKIGNRYIELFRSSTREMKWAENRLRR 207
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ +RG+PFS + +I FF + + K +++ G+ +GE F ++EEA +AM K
Sbjct: 410 VHLRGMPFSCDEQDIYDFFMPLRPV--KCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKH 467
Query: 238 KMTIGSRYVELFPSTPDEARRAESR 262
K +GSRY+ELF + RR +S+
Sbjct: 468 KEKMGSRYIELFAGS----RRPQSK 488
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V LRG+PF+C + DI FF L V + + GR SGE F + A+++ ++
Sbjct: 410 VHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHKE 469
Query: 120 NMGRRYVEVFRCKRQ 134
MG RY+E+F R+
Sbjct: 470 KMGSRYIELFAGSRR 484
>gi|47211266|emb|CAF91568.1| unnamed protein product [Tetraodon nigroviridis]
Length = 823
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L+ LPF CT++DI FF GL + V L + GR +G+A V F P + A++R
Sbjct: 230 VHLQNLPFTCTEMDIRHFFRGLGVDGVRFLKDAQGRHTGKASVKFFSPQESFEAVKRGGG 289
Query: 120 NMGRRYVEVFRCKRQDYY-----NAVASEVNYEGIYDNDFHGSPPPSRAKRYN----DKD 170
MG+R++E+ Q + ++ AS+ ++ + S PP + R N +D
Sbjct: 290 MMGQRFIEISPGSEQQWASISISDSTASQASHA--SNKPSVESQPPQQHCRNNAGAEGRD 347
Query: 171 QMEHTE-------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
Q + + ++GLP+ K +I +FF + IIED I+IA P+G+ATGE ++E
Sbjct: 348 QRGRSRSPHRQEFCVYLKGLPYEADKKQIKEFFSNLAIIEDSIYIAYGPNGRATGEGFLE 407
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFP 250
F + ++ K A+ +GSR++++ P
Sbjct: 408 FKTEQDHKAALGAHMQYMGSRFIQVHP 434
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 23/207 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP+ I +FF+ L I++ + NGR +GE F+ F + AL
Sbjct: 362 VYLKGLPYEADKKQIKEFFSNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGAH 421
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS----EVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
Q MG R+++V R+ + + E ++ G D +P
Sbjct: 422 MQYMGSRFIQVHPISRKGMLEKIDAIRKREASHGGGKSQDGSKNP--------------- 466
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ + +P+++ K ++ F + + ED + + G G+A + + E+A++A
Sbjct: 467 -RNCVHITNIPYNISKKDVRAFLEGVGLYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKA 525
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T D+ + E
Sbjct: 526 ERLHRQKLNGRDAFVHLVTVDQMKEIE 552
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y+++ + + G TGEA V F + EEA A+
Sbjct: 748 VVKLQNMPFTVTVDEIMDFFYGYQVVPGSVCLQFSEKGLPTGEAMVAFQNHEEATAAVLD 807
Query: 237 -DKMTIGSRYVEL 248
+ IG+R V++
Sbjct: 808 LNDRPIGARKVKI 820
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL+GLP +DI FF+GL I D V +V G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV---GGEHGEAFIVFATDEDARLGMMRT 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV 140
++ V + + + N +
Sbjct: 61 GGSIKGSKVSLLLSSKTEMQNMI 83
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+I V L S+ E + SR+
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIDLSRR 88
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 174 HTEI-LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
H E+ + ++ LPF+ + +I FF+ + D + G+ TG+A V+F S +E+
Sbjct: 225 HDELFVHLQNLPFTCTEMDIRHFFRGLGV--DGVRFLKDAQGRHTGKASVKFFSPQESFE 282
Query: 233 AMCKDKMTIGSRYVELFPST 252
A+ + +G R++E+ P +
Sbjct: 283 AVKRGGGMMGQRFIEISPGS 302
>gi|170035383|ref|XP_001845549.1| G-rich sequence factor-1 [Culex quinquefasciatus]
gi|167877365|gb|EDS40748.1| G-rich sequence factor-1 [Culex quinquefasciatus]
Length = 508
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 105/209 (50%), Gaps = 29/209 (13%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI--VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+RLRGLP+N T+ DI F G+ + V + + R +GEA++ AL ++
Sbjct: 19 IRLRGLPWNITEQDIRDFLQGVQVEHVHIGINAMTKRQTGEAYLRLPTLDDQIKALDLNK 78
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+G RY+EVF Y AV +G D D G P +L
Sbjct: 79 ATIGHRYIEVFTANEDQYEQAVN-----DGEGDED--GGP------------------VL 113
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSVEEAKRAMCK 236
K+RGLP+S K +I +FF I I D G+A+GEA VEF + +A++AM K
Sbjct: 114 KLRGLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRASGEAIVEFATEADAEQAMNK 173
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
K IGSRY+ELF S+ E + AE R+R+
Sbjct: 174 QKEKIGSRYIELFRSSTREMKWAEKRARR 202
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFA 113
PV++LRGLP++CT DI +FF GL I + +LL ++ GR SGEA V FA E A
Sbjct: 111 PVLKLRGLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRASGEAIVEFATEADAEQA 170
Query: 114 LQRDRQNMGRRYVEVFRC 131
+ + ++ +G RY+E+FR
Sbjct: 171 MNKQKEKIGSRYIELFRS 188
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ +RG+PFS +I FF + ++ I R G+ +GE F +VEEA +AM K
Sbjct: 426 VHLRGMPFSCDDQDIQDFFMPLRPVKANIEYDSR--GRPSGEGNAYFETVEEAMKAMKKH 483
Query: 238 KMTIGSRYVELF 249
K +GSRY+ELF
Sbjct: 484 KEKMGSRYIELF 495
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V LRG+PF+C D DI FF L V + + GR SGE F + A+++ ++
Sbjct: 426 VHLRGMPFSCDDQDIQDFFMPLRPVKANIEYDSRGRPSGEGNAYFETVEEAMKAMKKHKE 485
Query: 120 NMGRRYVEVFRCKRQ 134
MG RY+E+F R+
Sbjct: 486 KMGSRYIELFAGARK 500
>gi|402869627|ref|XP_003898853.1| PREDICTED: G-rich sequence factor 1 [Papio anubis]
Length = 606
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 36/219 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL IVD+ V + R +GEA+V F P AL +
Sbjct: 352 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 411
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 412 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 471
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++N+ P P + D M + MRGLPF +I+ FF K + +
Sbjct: 472 AFENEKEIELPKEVPEKLPEAADFGTMSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 529
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
I + GKATGEA V F + E+A AM KD+ + R
Sbjct: 530 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHR 568
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 226 YLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 285
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D + S
Sbjct: 286 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSS 345
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
ND ++++RGLP+S + +IV FF I++ +
Sbjct: 346 PVVND----------------------GVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVM 383
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R + TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 384 DYR-GRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 431
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 500 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 559
Query: 116 RDRQNMGRR 124
+DR ++ R
Sbjct: 560 KDRSHVHHR 568
>gi|195171791|ref|XP_002026687.1| GL11864 [Drosophila persimilis]
gi|194111613|gb|EDW33656.1| GL11864 [Drosophila persimilis]
Length = 830
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 28/208 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 358
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 359 HKHHIGARYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 399
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKI------IEDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ ++++FF + + + +PDG+ATG+A+V F + +A
Sbjct: 400 IIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANEGDA 459
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
+A+ + + +IG RY+ELF ST E ++
Sbjct: 460 PKALGRHRESIGQRYIELFRSTTAEVQQ 487
Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 46/221 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + +FF A ++D VL V K +GR +G+AFV+FA
Sbjct: 400 IIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANEGDA 459
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL R R+++G+RY+E+FR + + + G N
Sbjct: 460 PKALGRHRESIGQRYIELFRSTTAEVQQVL--HLITSGTTKN------------------ 499
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP+ I+ F D+ II +H+ G+ +GEA+++ S +
Sbjct: 500 ------CIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDSED 553
Query: 229 EAKRAMCKDK-----MTIGS--RYVELFPSTPDEARRAESR 262
A+ +C + M G RY+E+F + D+ R
Sbjct: 554 SAR--LCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNMVGQR 592
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 50/86 (58%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FVS E
Sbjct: 292 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEH 351
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 352 RDMALKRHKHHIGARYIEVYRASGED 377
>gi|335310367|ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
scrofa]
Length = 444
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + A+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMXXX-----XXXXXAFVQFASQEIAEKAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 165 KKHKERIGHRYIEIFKSSRAEVR 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 286 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 343
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 344 KANMQHRYVELF 355
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 271 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 330
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 331 ATHEDAVAAMAKDKANMQHRYVELF 355
>gi|194219511|ref|XP_001497574.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Equus
caballus]
Length = 456
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 23/205 (11%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
P P RL CK G + + + GR SGEAFV +V+
Sbjct: 18 PAGPRLRSARLLNSVLTVVFFPDCKIQNGAQGIR-FIYTREGRPSGEAFVELESEDEVKL 76
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 77 ALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG--- 118
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++
Sbjct: 119 ----FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEK 174
Query: 233 AMCKDKMTIGSRYVELFPSTPDEAR 257
A+ K K IG RY+E+F S+ E R
Sbjct: 175 ALKKHKERIGHRYIEIFKSSRAEVR 199
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 282 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 339
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 340 VEFATHEDAVAAMSKDKANMQHRYVELF 367
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 283 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 342
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 343 ATHEDAVAAMSKDKANMQHRYVELF 367
>gi|268536900|ref|XP_002633585.1| Hypothetical protein CBG05462 [Caenorhabditis briggsae]
Length = 588
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 103/200 (51%), Gaps = 27/200 (13%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPFN T+ DI +FF GL + V V GR +GEA+V FA ++ DR+
Sbjct: 65 VRLRGLPFNATEKDIHEFFTGLIVKRVKFVCTTGRPNGEAYVEFASTDDAGRGMECDRKE 124
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
M RY+E+F SE E D D +G E ++++
Sbjct: 125 MSNRYIEIFSVP--------ISEGENEFRPDADGNG----------------EENHVVRL 160
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHI--ACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
RG+P+S K+ ++ QFF+ + +I I P + +GEA+V F S + A +AM +
Sbjct: 161 RGVPWSCKEEDVKQFFQGLEPPPAEIVIGGTSGPRPRPSGEAFVRFTS-QAAAKAMEYNN 219
Query: 239 MTIGSRYVELFPSTPDEARR 258
M +G+RYVE+F S+ E R
Sbjct: 220 MHMGTRYVEVFMSSMVELNR 239
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ +++RGLPF+ + +I +FF +I ++ C G+ GEAYVEF S ++A R M
Sbjct: 62 SQFVRLRGLPFNATEKDIHEFFTG--LIVKRVKFVCT-TGRPNGEAYVEFASTDDAGRGM 118
Query: 235 CKDKMTIGSRYVELF 249
D+ + +RY+E+F
Sbjct: 119 ECDRKEMSNRYIEIF 133
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVNKNG---RFSGEAFVVFAGPIQVEFAL 114
VVRLRG+P++C + D+ +FF GL+ ++++ +G R SGEAFV F + A+
Sbjct: 157 VVRLRGVPWSCKEEDVKQFFQGLEPPPAEIVIGGTSGPRPRPSGEAFVRFTSQAAAK-AM 215
Query: 115 QRDRQNMGRRYVEVF 129
+ + +MG RYVEVF
Sbjct: 216 EYNNMHMGTRYVEVF 230
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ +RGLP++ I FF+ L + + L +N+ GR SG+A F ++ L R+ Q
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRVHSIKLGINEAGRSSGDAIAEFDSYQDLQSGLARNNQ 388
Query: 120 NMGRRYVEVFRCK 132
MGRRYVE+F +
Sbjct: 389 RMGRRYVELFDTR 401
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ I FF ++ I + G+++G+A EF S ++ + + ++
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRV--HSIKLGINEAGRSSGDAIAEFDSYQDLQSGLARN 386
Query: 238 KMTIGSRYVELF 249
+G RYVELF
Sbjct: 387 NQRMGRRYVELF 398
>gi|354486518|ref|XP_003505427.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Cricetulus
griseus]
Length = 447
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CK G + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+
Sbjct: 9 CKIQNGAQGIR-FIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----- 62
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
++ V + + + SP + ND +++RGLPF K EIVQF
Sbjct: 63 -----SNNVEMDWVLKHTGPNSPDTA-----NDG-------FVRLRGLPFGCSKEEIVQF 105
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
F +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E
Sbjct: 106 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 165
Query: 256 ARRAESRSRQ 265
R ++ R+
Sbjct: 166 VRTHKNTPRK 175
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 88 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 147
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 148 KERIGHRYIEIFKSSRAE 165
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 250 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 307
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256
VEF + E+A AM KDK + RYVELF ++ A
Sbjct: 308 VEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGA 342
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 251 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 310
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 311 ATHEDAVAAMSKDKANMQHRYVELF 335
>gi|313244027|emb|CBY14897.1| unnamed protein product [Oikopleura dioica]
Length = 376
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 25/208 (12%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGL--DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
P+F VRLRGLP++ T +IC+F + ++ + ++GR SGEA V E A
Sbjct: 16 PAF-AVRLRGLPWSATKQEICEFLENRPDESSVIICLGRDGRPSGEALVGLYDSDSFELA 74
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+ ++N+GRRYVEV+ +Y N YDND D
Sbjct: 75 KSKHKENLGRRYVEVYESSTAEYMNCS---------YDND------------DGDASGFS 113
Query: 174 HTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
E I+KMRG+PFS +I FF I I I +G A GEA V+F E A +
Sbjct: 114 GYEFIVKMRGMPFSATDHDIRDFFDGCSISPGGIVICLGQNGSANGEALVQFDDKESADQ 173
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAE 260
A+ + K +G RY+E+F S+ + + A+
Sbjct: 174 ALERHKKNMGQRYIEVFKSSSRDLQLAQ 201
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 50/252 (19%)
Query: 40 ASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRF 96
ASGF Y + +V++RG+PF+ TD DI FF G I V+ + +NG
Sbjct: 109 ASGFSGYEF-----------IVKMRGMPFSATDHDIRDFFDGCSISPGGIVICLGQNGSA 157
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV------------ 144
+GEA V F + AL+R ++NMG+RY+EVF+ +D A
Sbjct: 158 NGEALVQFDDKESADQALERHKKNMGQRYIEVFKSSSRDLQLAQGRNGGAGGGGSGGGPM 217
Query: 145 --NYEGIYDNDFHGSPPPSR------------------AKRYNDKDQMEHTEILKMRGLP 184
+ G +G PP R ++ Q +H I+ MRGLP
Sbjct: 218 RNSRSGGPRASPYGGPPAGRPAIGGYGGSSAGGPPADPGAGLDENGQYKH--IVHMRGLP 275
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
+ + EI +FF + + I + + GEA V F + +A+ ++ KD+ +GSR
Sbjct: 276 YRATEQEISEFFLPVNTL--AVRIIFNRENRPAGEADVAFYTHADAQASLSKDRQNLGSR 333
Query: 245 YVELFPSTPDEA 256
YVELF + D+
Sbjct: 334 YVELFLRSTDDG 345
>gi|344246789|gb|EGW02893.1| Heterogeneous nuclear ribonucleoprotein H [Cricetulus griseus]
Length = 415
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CK G + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+
Sbjct: 7 CKIQNGAQGIR-FIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----- 60
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
++ V + + + SP + ND +++RGLPF K EIVQF
Sbjct: 61 -----SNNVEMDWVLKHTGPNSPDTA-----NDG-------FVRLRGLPFGCSKEEIVQF 103
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
F +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E
Sbjct: 104 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 163
Query: 256 ARRAESRSRQ 265
R ++ R+
Sbjct: 164 VRTHKNTPRK 173
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 86 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 145
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 146 KERIGHRYIEIFKSSRAE 163
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 248 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 305
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 306 VEFATHEDAVAAMSKDKANMQHRYVELF 333
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 249 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 308
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 309 ATHEDAVAAMSKDKANMQHRYVELF 333
>gi|449667958|ref|XP_002158900.2| PREDICTED: epithelial splicing regulatory protein 1-like [Hydra
magnipapillata]
Length = 503
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 28/231 (12%)
Query: 35 AVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVN 91
+VS + + P GY +VR RGLP+ +D+D+ FF GL+I L +N
Sbjct: 197 SVSLTLNDGMPTGY------VKDDTIVRARGLPWQVSDVDVAAFFTGLNIAKGGVALCLN 250
Query: 92 KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD 151
GR +GEA V F + AL+R + ++ RY+EV++ Q++
Sbjct: 251 VKGRRNGEALVRFESSEHRDMALRRHKHHLLGRYIEVYKGTAQEFLKI------------ 298
Query: 152 NDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY-KIIEDK--IHI 208
P + + I++MRGLPF ++V+FF D K+++ K + +
Sbjct: 299 ----AKGPAAAMHAAAEFLTNGGEVIIRMRGLPFDATVHDVVEFFGDSPKVLQGKNGVML 354
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
PDG +TG+A+V F + E + A+ K + IG RYVELF ST E ++
Sbjct: 355 ISYPDGASTGDAFVLFETEAEGQFALKKHRENIGKRYVELFRSTRAELQQV 405
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 11/152 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-----DVLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF+ T D+ +FF V V+L++ +G +G+AFV+F + +FA
Sbjct: 320 IIRMRGLPFDATVHDVVEFFGDSPKVLQGKNGVMLISYPDGASTGDAFVLFETEAEGQFA 379
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVAS-EVNYEGIY----DNDFHGSPPPSRAKRYND 168
L++ R+N+G+RYVE+FR R + + + Y+ + F GS RA
Sbjct: 380 LKKHRENIGKRYVELFRSTRAELQQVLTMYNIGYQLVTPVPGQLPFPGSGLNDRALINQR 439
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK 200
+ + L+MRGLPFS +I+ F +YK
Sbjct: 440 LQALMNMSCLRMRGLPFSASHKDILNFLGNYK 471
>gi|351714509|gb|EHB17428.1| Heterogeneous nuclear ribonucleoprotein H, partial [Heterocephalus
glaber]
Length = 444
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CK G + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+
Sbjct: 6 CKIQNGAQGIR-FIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----- 59
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
++ V + + + SP + ND +++RGLPF K EIVQF
Sbjct: 60 -----SNNVEMDWVLKHTGPNSPDTA-----NDG-------FVRLRGLPFGCSKEEIVQF 102
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
F +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E
Sbjct: 103 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 162
Query: 256 AR 257
R
Sbjct: 163 VR 164
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 85 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 144
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 145 KERIGHRYIEIFKSSRAE 162
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 247 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 304
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 305 VEFATHEDAVAAMSKDKANMQHRYVELF 332
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 248 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 307
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 308 ATHEDAVAAMSKDKANMQHRYVELF 332
>gi|395504896|ref|XP_003756782.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sarcophilus
harrisii]
Length = 471
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CK G + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+
Sbjct: 33 CKIQNGASGIR-FIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----- 86
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
++ V + + + SP + ND +++RGLPF K EIVQF
Sbjct: 87 -----SNNVEMDWVLKHTGPNSPDTA-----NDG-------FVRLRGLPFGCSKEEIVQF 129
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
F +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E
Sbjct: 130 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 189
Query: 256 AR 257
R
Sbjct: 190 VR 191
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 172 KERIGHRYIEIFKSSRAE 189
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 274 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 331
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 332 VEFATHEDAVAAMSKDKANMQHRYVELF 359
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 275 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 335 ATHEDAVAAMSKDKANMQHRYVELF 359
>gi|355694919|gb|AER99830.1| heteroproteinous nuclear ribonucleoprotein F [Mustela putorius
furo]
Length = 342
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 22/158 (13%)
Query: 100 AFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP 159
AFV V+ AL++DR++MG RY+EVF+ R +E+++ +
Sbjct: 1 AFVELESEDDVKMALKKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG------- 45
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
P+ A ND +++RGLPF K EIVQFF +I+ + I + P+GK TGE
Sbjct: 46 PNSADTANDG-------FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 98
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A+V+F S E A++A+ K K IG RY+E+F S+ +E R
Sbjct: 99 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVR 136
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 108/257 (42%), Gaps = 63/257 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 57 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 116
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 117 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 176
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 177 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 236
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 237 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 294
Query: 240 TIGSRYVELFPSTPDEA 256
+ RY+ELF ++ A
Sbjct: 295 NMQHRYIELFLNSTTGA 311
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 235 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 294
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 295 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 324
>gi|393908924|gb|EFO28044.2| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 370
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 26/207 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFF--AGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQR 116
+++ RGLP++CT+ D+ +FF A I + L +++GR SGE +VVF+ +FAL +
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDF-HGSP--PPSRAKRYNDKDQME 173
D++ +G+RYVE+ + E +Y+ D D +G P P+ R
Sbjct: 67 DKKYIGKRYVEL--------QQVSSMESDYD---DGDRRYGGPVADPNLPGR-------- 107
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKR 232
T I+++ GLP+ K EIV+FF+ +I + I + R GK GEA+V F + A +
Sbjct: 108 ETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFTDEDSASK 167
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRA 259
A+ K+K I RYV+++PS+ E RA
Sbjct: 168 ALAKNKEYIQHRYVDIYPSSYGEMLRA 194
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
PPP + +R+RGLP+ T+ DI FF L +DVL R SGEA V F +
Sbjct: 291 PPPEY-CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTDRPSGEAIVEFRNRADFD 349
Query: 112 FALQRDRQNMGRRYVEVF 129
A+QR+R MG RYVE+
Sbjct: 350 AAMQRNRNYMGSRYVELI 367
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+ + +I+ FF+ + + D + +GEA VEF + + AM ++
Sbjct: 297 IRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQRN 355
Query: 238 KMTIGSRYVELFP 250
+ +GSRYVEL P
Sbjct: 356 RNYMGSRYVELIP 368
>gi|308477529|ref|XP_003100978.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
gi|308264322|gb|EFP08275.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
Length = 621
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 111/212 (52%), Gaps = 17/212 (8%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
PP VRLRGLPFN T+ DI +FF+GL + V V GR +GEA+V F A
Sbjct: 69 PPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAYVEFKTQDDAGKA 128
Query: 114 LQRDRQNMGRRYVEV-FRCKRQDYYNAVA--SEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
++ DR+ M RY+E F +Q+ + + S + EG +F P P
Sbjct: 129 MENDRKEMSNRYIESEFLIGKQENNSNILVFSVTDVEG----EFEFRPDP--------DG 176
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR--PDGKATGEAYVEFVSVE 228
E ++++RG+P+S K+ +I QFF + + +I I P + +GEA+V F +
Sbjct: 177 NGEENHVVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQA 236
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
A+ AM + +G+RY+E+F S+ E RA+
Sbjct: 237 AAEAAMEYNNRHMGTRYIEVFMSSMVELNRAK 268
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG P + +RGLP++ I FF+ L + L +N GR SG+A F
Sbjct: 342 YGKGGASDEPLR---IYMRGLPYDADHYAIEAFFSPLRCHSIKLGINDTGRPSGDAIAEF 398
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVFRCK 132
++ L ++ Q MGRRYVE+F +
Sbjct: 399 DSYNDLQAGLSKNNQRMGRRYVELFDTR 426
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ I FF + I + G+ +G+A EF S + + + K+
Sbjct: 354 IYMRGLPYDADHYAIEAFFSPLRC--HSIKLGINDTGRPSGDAIAEFDSYNDLQAGLSKN 411
Query: 238 KMTIGSRYVELF 249
+G RYVELF
Sbjct: 412 NQRMGRRYVELF 423
>gi|118362902|ref|XP_001014867.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila]
gi|89296443|gb|EAR94431.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila
SB210]
Length = 967
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/198 (34%), Positives = 114/198 (57%), Gaps = 13/198 (6%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFA-GLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFAL 114
S+ +RLRGLPFN + +I +F L+ + + N GRFSGE + Q++
Sbjct: 355 SYHYLRLRGLPFNAREAEIQQFLGISLEQDQITFKHDNDGRFSGECVIRTKDQNQLDKIK 414
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ +NMG+RY+EVF ++ D+ A S+ I D+ G S+ D + ++
Sbjct: 415 DKHMRNMGKRYIEVFVAEQSDFVRAQDSQ-----IIDDQKVGI---SQINSQIDPNLLQS 466
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK-ATGEAYVEFVSVEEAKRA 233
I+K+RGLP++ +I +FFKD +I+++ I DGK +GEA++ F + ++A++A
Sbjct: 467 ANIVKIRGLPYNATDQDIQKFFKDSQIVQNGIQKVY--DGKRPSGEAFIIFATKQDAQKA 524
Query: 234 MCKDKMTIGSRYVELFPS 251
+ KDK +GSRY+E+F S
Sbjct: 525 IEKDKEKMGSRYIEIFLS 542
Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+V++RGLP+N TD DI KFF IV + V R SGEAF++FA + A+++D
Sbjct: 469 IVKIRGLPYNATDQDIQKFFKDSQIVQNGIQKVYDGKRPSGEAFIIFATKQDAQKAIEKD 528
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNY 146
++ MG RY+E+F +++ N + +Y
Sbjct: 529 KEKMGSRYIEIFLSHLKEFTNHIKKRKSY 557
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
L++RGLPF+ +++EI QF + +D+I DG+ +GE + + + K
Sbjct: 359 LRLRGLPFNAREAEIQQFL-GISLEQDQITFKHDNDGRFSGECVIRTKDQNQLDKIKDKH 417
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+G RY+E+F + + RA+
Sbjct: 418 MRNMGKRYIEVFVAEQSDFVRAQ 440
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV---NKNGRFSGEAFVVFAGPIQVEFALQRD 117
++LRG+P+N + ++ F GL + +V +KN +F+GE F+ Q +
Sbjct: 167 LKLRGIPYNAKESEVQDFL-GLTLDKYQMVFKYDKNEKFTGECFIKAKDQDQFDKIKSMH 225
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASE 143
++ M RY+E+F + ++ A S+
Sbjct: 226 KKTMKNRYIEIFVADKIEFVQAQESQ 251
Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG--KATGEAYVEFVSVEEAKRAMC 235
LK+RG+P++ K+SE+ F + DK + + D K TGE +++ ++ +
Sbjct: 167 LKLRGIPYNAKESEVQDFL---GLTLDKYQMVFKYDKNEKFTGECFIKAKDQDQFDKIKS 223
Query: 236 KDKMTIGSRYVELFPSTPDEARRAE 260
K T+ +RY+E+F + E +A+
Sbjct: 224 MHKKTMKNRYIEIFVADKIEFVQAQ 248
>gi|25144421|ref|NP_740878.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
gi|351061233|emb|CCD68996.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
Length = 362
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V+ RGLP+ T+ ++ FF I + + +NGR SG+A VVF AL++DR++
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN-DFHGSPPPSRAKRYNDKDQMEHT---E 176
+G RY+EVF E G D+ G+PP RY+D+ +
Sbjct: 67 LGSRYIEVFPAGGAPTRRGDRGERGDRGDRDHYRSRGAPP---RDRYSDRGGPRSSGPDS 123
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+++RGLPFSV +I F I+ D I + + + GEAYV F ++E + A +
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQR 183
Query: 237 DKMTIGSRYVELFPST 252
IG RY+E+F +T
Sbjct: 184 HMKNIGHRYIEVFEAT 199
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF+ T DI F A L IV D +L+ + R GEA+V F V+ A QR
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQR 183
Query: 117 DRQNMGRRYVEVFRCKRQD 135
+N+G RY+EVF +D
Sbjct: 184 HMKNIGHRYIEVFEATHRD 202
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++ RGLP+ + E+ FF + I + + I R +G+ +G+A V F + E+ A+ KD
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGI--ESLEIPRR-NGRTSGDAKVVFTNEEDYNNALKKD 63
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+ +GSRY+E+FP+ RR +
Sbjct: 64 REHLGSRYIEVFPAGGAPTRRGD 86
>gi|198417021|ref|XP_002122500.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H2
(hnRNP H2) (Heterogeneous nuclear ribonucleoprotein H)
(hnRNP H) (FTP-3) [Ciona intestinalis]
Length = 420
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 25/200 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
VVRLRGLP+ T+ ++ KF G + + R SGEAFV ++ +
Sbjct: 7 VVRLRGLPWAATEAEVIKFLNVEVVGGEAGIRRTYTDDQRPSGEAFVEVTSQKSLQTCFE 66
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
+D Q +G+RY+EVF + E+ Y + GS +
Sbjct: 67 KDHQLIGKRYIEVF--------ESSVKEMEYVLGLSEEEIGSSAQADV------------ 106
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+++RGLPF K E+ QFF +I+ + I + +G++TGEAYVEF S E A++A+
Sbjct: 107 -FVRLRGLPFQCSKEEVAQFFSGLEIVPNGITLPLDDNGRSTGEAYVEFGSPESAEKALT 165
Query: 236 KDKMTIGSRYVELFPSTPDE 255
K K IG RY+E+F S+ E
Sbjct: 166 KHKEKIGHRYIEIFKSSKRE 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
PS VVR+RGLPF C + D+ FF+ L V V + + +GR +GE V FA + A+
Sbjct: 314 PSQFVVRMRGLPFKCQEQDVFNFFSPLVPVRVNIEYSDDGRVTGEGTVFFASYQDAQAAM 373
Query: 115 QRDRQNMGRRYVEVF-RCKRQD 135
Q++++ + RY+E+F R R+D
Sbjct: 374 QKNKECIQHRYIELFLRSNRRD 395
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++MRGLPF ++ ++ FF ++ +++I DG+ TGE V F S ++A+ AM K
Sbjct: 318 VVRMRGLPFKCQEQDVFNFFS--PLVPVRVNIEYSDDGRVTGEGTVFFASYQDAQAAMQK 375
Query: 237 DKMTIGSRYVELF 249
+K I RY+ELF
Sbjct: 376 NKECIQHRYIELF 388
>gi|432118737|gb|ELK38193.1| Epithelial splicing regulatory protein 1 [Myotis davidii]
Length = 596
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 25/185 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 194 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 253
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 254 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 294
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 295 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 354
Query: 234 MCKDK 238
+ K K
Sbjct: 355 LRKHK 359
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 50/205 (24%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA E+A
Sbjct: 295 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE---EYA 351
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
QN R++ ++ +Q PP+ +
Sbjct: 352 -----QNALRKHKDLLVLPQQFV----------------------PPTNVR--------- 375
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S + A
Sbjct: 376 --DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAY 433
Query: 232 RAMCK-DKMTIGSRYVELFPSTPDE 255
A K K T+ RYVE+F + +E
Sbjct: 434 LAAQKCHKKTMKDRYVEVFQCSAEE 458
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 189 VDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 248
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 249 LALQRHKHHMGTRYIEVYKATGED 272
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 370 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 428
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 429 ADRAYLAAQKCHKKTMKDRYVEVFQCSAEE 458
>gi|431895711|gb|ELK05132.1| Heterogeneous nuclear ribonucleoprotein H2 [Pteropus alecto]
Length = 422
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 23/182 (12%)
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CK G + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+
Sbjct: 7 CKIQNGTSGIR-FIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----- 60
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
++ V + + + SP + ND +++RGLPF K EIVQF
Sbjct: 61 -----SNSVEMDWVLKHTGPNSPDTA-----NDG-------FVRLRGLPFGCSKEEIVQF 103
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
F +I+ + + + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E
Sbjct: 104 FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 163
Query: 256 AR 257
R
Sbjct: 164 VR 165
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 86 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 145
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 146 KERIGHRYIEIFKSSRAE 163
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 264 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 321
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 322 KANMQHRYVELF 333
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 249 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 308
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 309 ATHEDAVAAMAKDKANMQHRYVELF 333
>gi|25144418|ref|NP_740877.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
gi|351061232|emb|CCD68995.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
Length = 549
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V+ RGLP+ T+ ++ FF I + + +NGR SG+A VVF AL++DR++
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN-DFHGSPPPSRAKRYNDKDQMEHT---E 176
+G RY+EVF E G D+ G+PP RY+D+ +
Sbjct: 67 LGSRYIEVFPAGGAPTRRGDRGERGDRGDRDHYRSRGAPP---RDRYSDRGGPRSSGPDS 123
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+++RGLPFSV +I F I+ D I + + + GEAYV F ++E + A +
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQR 183
Query: 237 DKMTIGSRYVELFPST 252
IG RY+E+F +T
Sbjct: 184 HMKNIGHRYIEVFEAT 199
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLPF+ T DI F A L IV D +L+ + R GEA+V F V+ A QR
Sbjct: 124 IVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQR 183
Query: 117 DRQNMGRRYVEVFRCKRQD 135
+N+G RY+EVF +D
Sbjct: 184 HMKNIGHRYIEVFEATHRD 202
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++ RGLP+ + E+ FF + I + + I R +G+ +G+A V F + E+ A+ KD
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGI--ESLEIPRR-NGRTSGDAKVVFTNEEDYNNALKKD 63
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+ +GSRY+E+FP+ RR +
Sbjct: 64 REHLGSRYIEVFPAGGAPTRRGD 86
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 44 QPYGYGG----GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGL--DIVDVLLVNKNGRFS 97
+PYGY G P F V+R+RG+PF ++ D+ FF + + V++L ++ R S
Sbjct: 453 EPYGYSRDRDYGAPQNQHF-VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPS 511
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
G+A V+F + AL +D+Q MG RY+E+
Sbjct: 512 GDARVIFYNRKDYDDALMKDKQYMGERYIEMI 543
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKI---HIACRPDGKATGEAYVEFVSVEEAKRA 233
+L+MRG+PF ++++ FF + + ++ H RP +G+A V F + ++ A
Sbjct: 472 VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRP----SGDARVIFYNRKDYDDA 527
Query: 234 MCKDKMTIGSRYVELFPST 252
+ KDK +G RY+E+ P
Sbjct: 528 LMKDKQYMGERYIEMIPDN 546
>gi|268565477|ref|XP_002639457.1| C. briggsae CBR-HRPF-1 protein [Caenorhabditis briggsae]
Length = 556
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 15/203 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V+ RGLP+ T+ D+ FF I + + +NGR SG+A V F AL++DR++
Sbjct: 7 VQCRGLPWEATEQDLRDFFGNNGIASLDIPIRNGRTSGDATVTFTNEDDYRQALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT----- 175
+G RY+EVF ++ G G PP R++D+ + T
Sbjct: 67 LGSRYIEVFPMDEPPRRRGDRNDFRPRG-------GGPP---RDRFSDRGSGQRTGPSTD 116
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
I+++RGLPFSV +I F I+ D I + + + GEAYV F S+E + A
Sbjct: 117 PIVRLRGLPFSVTIRDINDFLAPLPIVRDGILLPDQQRARIAGEAYVVFDSLESVQIAKQ 176
Query: 236 KDKMTIGSRYVELFPSTPDEARR 258
+ IG RY+E+F +T E R
Sbjct: 177 RHMKNIGHRYIEVFEATQRELSR 199
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVE 111
P + P+VRLRGLPF+ T DI F A L IV D +L+ + R +GEA+VVF V+
Sbjct: 113 PSTDPIVRLRGLPFSVTIRDINDFLAPLPIVRDGILLPDQQRARIAGEAYVVFDSLESVQ 172
Query: 112 FALQRDRQNMGRRYVEVFRCKRQD 135
A QR +N+G RY+EVF +++
Sbjct: 173 IAKQRHMKNIGHRYIEVFEATQRE 196
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 11 SGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGF-QPYGYGGGFPPPPSFPVVRLRGLPFN 69
+GG E G R P+PY G+ + YG P V+R+RG+PF
Sbjct: 437 AGGALRRSEYGRPDDRYSRPDPY--------GYGRDRDYGSHAAPNNQHFVLRMRGVPFR 488
Query: 70 CTDIDICKFFAGL--DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
T+ D+ +FF + + V+++ ++ R SG+A V+F + AL +D+Q MG RY+E
Sbjct: 489 ATETDVYEFFHPIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALMKDKQYMGERYIE 548
Query: 128 VF 129
+
Sbjct: 549 MI 550
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++ RGLP+ + ++ FF + I I I +G+ +G+A V F + ++ ++A+ KD
Sbjct: 7 VQCRGLPWEATEQDLRDFFGNNGIASLDIPIR---NGRTSGDATVTFTNEDDYRQALKKD 63
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+ +GSRY+E+FP RR +
Sbjct: 64 REHLGSRYIEVFPMDEPPRRRGD 86
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 177 ILKMRGLPFSVKKSEIVQFF-----KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+L+MRG+PF ++++ +FF ++I D + + +G+A V F S ++
Sbjct: 479 VLRMRGVPFRATETDVYEFFHPIRPNQVELIRDSQYQ------RPSGDARVIFYSRKDYD 532
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ KDK +G RY+E+ P
Sbjct: 533 DALMKDKQYMGERYIEMIPDN 553
>gi|449474971|ref|XP_002195792.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Taeniopygia
guttata]
Length = 419
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 23/182 (12%)
Query: 76 CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
CK G + + + GR SGEAF V+ AL++DR+ MG RYVEVF+
Sbjct: 15 CKILNGALGIR-FIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFK----- 68
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
++ V + + + SP + ND +++RGLPF K EIVQF
Sbjct: 69 -----SNNVEMDWVLKHTGPNSPDTA-----NDG-------FVRLRGLPFGCSKEEIVQF 111
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
F +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S+ E
Sbjct: 112 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 171
Query: 256 AR 257
R
Sbjct: 172 VR 173
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 94 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 153
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 154 KERIGHRYIEIFKSSRAE 171
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 256 RYGDGSSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 313
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 314 VEFATHEDAVAAMSKDKANMQHRYVELF 341
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG G + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 257 YGDGSSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 316
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 317 ATHEDAVAAMSKDKANMQHRYVELF 341
>gi|240849679|gb|ACS54296.1| RE48185p [Drosophila melanogaster]
Length = 860
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 114/214 (53%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGL + +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLLWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKD-----YKIIE--DKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 84.0 bits (206), Expect = 6e-14, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 33/225 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP---------- 159
AL R R+++G+RY+E+FR + + ++ + H PP
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKAT 217
P + ++ +++RGLP+ I+ F D+ II +H+ G+ +
Sbjct: 501 PLLPQHLITSGTTKNC--IRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPS 558
Query: 218 GEAYVEFVSVEEAKRAMCKDK-----MTIGS--RYVELFPSTPDE 255
GEA+++ + +EE+ R +C + M G RY+E+F + D+
Sbjct: 559 GEAFIQ-MDLEESAR-LCAQRRHNHYMMFGKKYRYIEVFQCSGDD 601
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGL + +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLLWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
>gi|449284112|gb|EMC90693.1| Epithelial splicing regulatory protein 1 [Columba livia]
Length = 529
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 25/195 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 149 VIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 208
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 209 HKHHMGSRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 249
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+V E++ FF + + ++ + PD + TG+A+V F E A+ A
Sbjct: 250 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 309
Query: 234 MCKDKMTIGSRYVEL 248
+ K K +G R + +
Sbjct: 310 LKKHKDLLGKRRLSV 324
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T ++ FF V VL V + R +G+AFV+FA + A
Sbjct: 250 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 309
Query: 114 LQRDRQNMGRRYVEV------FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN 167
L++ + +G+R + V F Y + + I PP+ +
Sbjct: 310 LKKHKDLLGKRRLSVTSLVFCFAQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVR--- 366
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFV 225
+ +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 367 --------DCIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMK 418
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S E A A K K T+ RYVE+F + +E
Sbjct: 419 SAERAFLAAQKCHKKTMKDRYVEVFQCSAEE 449
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ +++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 142 ELVDNNAVIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 201
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T ++
Sbjct: 202 RDLALQRHKHHMGSRYIEVYKATGED 227
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI +F D+ +++N GR SG+AF+
Sbjct: 361 PPTNVRDCIRLRGLPYAATIEDILEFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 419
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 420 AERAFLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 470
>gi|20987708|gb|AAH29764.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 96 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 155
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 156 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 215
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 216 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 273
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 274 NMQHRYIELFLNSTTGASNGAYSSQ 298
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RY+EVF+ R +E+++ + P+ A ND +++
Sbjct: 1 MGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG-------FVRL 38
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K K
Sbjct: 39 RGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 98
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ +E R
Sbjct: 99 IGHRYIEVFKSSQEEVR 115
>gi|345308102|ref|XP_001505380.2| PREDICTED: epithelial splicing regulatory protein 2-like
[Ornithorhynchus anatinus]
Length = 729
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D I +FF GL+I L +N GR +GEA V F + AL+R
Sbjct: 247 VIRARGLPWQSSDQHIARFFIGLNIAKGGVALCLNAQGRRNGEALVRFVNSDHRDLALER 306
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ ++ N A+ + ++Q+
Sbjct: 307 HKHHMGSRYIEVYKATGDEFLKIAGGTSN---------------EVAQFLSRENQV---- 347
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I+++RGLPFS +++ F + + + PDG+ TG+A+ F + A+ A
Sbjct: 348 IIRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSA 407
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 408 LRRHKGILGKRYIELFRSTAAEVQQVLNR 436
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 28/213 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ T D+ F V +L V +GR +G+AF +FA + A
Sbjct: 348 IIRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSA 407
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + A+EV + + + P+
Sbjct: 408 LRRHKGILGKRYIELFR--------STAAEV--QQVLNRYLSAPLIPTLPPPLLPVLPPP 457
Query: 174 HT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ + +++RGLP++ +++ F + I +H+ G+ +G+A+++
Sbjct: 458 YALAGSCVRDCVRLRGLPYTAGIDDVLDFMGEATADIRPHGVHMVLNQQGRPSGDAFIQM 517
Query: 225 VSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S E A+ A C KM + RYVE+FP + DE
Sbjct: 518 KSAERAQVAAQRCHKKM-MKERYVEVFPCSGDE 549
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
N + ++ +++ RGLP+ I +FF I + + + G+ GEA V FV+
Sbjct: 237 NKSESVDSETVIRARGLPWQSSDQHIARFFIGLNIAKGGVALCLNAQGRRNGEALVRFVN 296
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ A+ + K +GSRY+E++ +T DE
Sbjct: 297 SDHRDLALERHKHHMGSRYIEVYKATGDE 325
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ D+ F G D+ +++N+ GR SG+AF+ + + A
Sbjct: 469 VRLRGLPYTAGIDDVLDFM-GEATADIRPHGVHMVLNQQGRPSGDAFIQMKSAERAQVAA 527
Query: 115 QR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEVF C + + +N G+ SPPP +
Sbjct: 528 QRCHKKMMKERYVEVFPCSGDEMSLVLMGGSLNRSGL-------SPPPCK 570
>gi|20073357|gb|AAH27003.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 96 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 155
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 156 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMCDHRYGDSEFTVQSTTGHCVH 215
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 216 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 273
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 274 NMQHRYIELFLNSTTGASNGAYSSQ 298
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RY+EVF+ R +E+++ + P+ A ND +++
Sbjct: 1 MGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG-------FVRL 38
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K K
Sbjct: 39 RGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 98
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ +E R
Sbjct: 99 IGHRYIEVFKSSQEEVR 115
>gi|159469283|ref|XP_001692797.1| splicing factor [Chlamydomonas reinhardtii]
gi|158278050|gb|EDP03816.1| splicing factor [Chlamydomonas reinhardtii]
Length = 647
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 30/218 (13%)
Query: 51 GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQV 110
G P P V+RLRGLPF+ + D+ +FFA ++ V++ + GR +GE +V
Sbjct: 18 GVPSVPKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGEGYVQLDSVAAA 77
Query: 111 EFALQR-DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
A+ + RQ +G RY+EVF D A + V+ R + +
Sbjct: 78 ADAIAKLHRQTLGHRYIEVFESTEADLATAKSLSVD----------------RMRGF--- 118
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFF-KDYKIIE--DKIHIACRPDGKATGEAYVEFVS 226
+++ RGLP++ +++ FF D I+ + + PDG+ TGEA+VE +
Sbjct: 119 -------VIRCRGLPYTSTAQDVLNFFGADVPIVRGIEGVVFTYAPDGRPTGEAFVELQT 171
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
E + A+ K K ++GSRY+ELF ST + +A ++R
Sbjct: 172 EEAQREALKKHKESLGSRYIELFVSTKVDMIQAIQQNR 209
>gi|296486434|tpg|DAA28547.1| TPA: G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 406
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S H P M +
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LHVKSAP-----------MVN 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 DGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMASQAL 308
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 309 LKHREEIGNRYIEIFPSRRNEVR 331
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 312 REEIGNRYIEIFPSRRNEVRTHVGS 336
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSV 227
++++ +++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S
Sbjct: 145 EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 204
Query: 228 EEAKRAMCKDKMTIGSRYVELF 249
++ ++A+ K +M +G RYVE++
Sbjct: 205 QDVQKALEKHRMYMGQRYVEVY 226
>gi|351695486|gb|EHA98404.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 348
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 109/251 (43%), Gaps = 64/251 (25%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL++
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALRKH 104
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + + +
Sbjct: 105 KERIGHRYIEVFKSSQQEVRSYSDLPLKFMSMQRPGPYDRPGTARRYIGIVKQTGLERMS 164
Query: 139 AVASEVNYEGI----------YDNDFHGSP-----PPSRAKRYNDKD---QMEHTEILKM 180
+ A Y G + D G RY D + Q + M
Sbjct: 165 SGAYSAGYGGFEYSGLSEGYGFTTDLFGRGLSYCLSSMYDHRYGDGEFTVQSTTGHCVHM 224
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-- 238
RGLP+ +++I FF + ++HI RP+G+ TGEA VEF + EEA AM KDK
Sbjct: 225 RGLPYKATENDIYNFFSPLNAV--RVHIEIRPNGRVTGEADVEFATNEEAMAAMSKDKDR 282
Query: 239 MTIGSRYVELF 249
I RY+ELF
Sbjct: 283 TNIQHRYIELF 293
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 26/148 (17%)
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL+ DR++MG RY+EVF HG+ R +++ D
Sbjct: 1 MALKNDRESMGHRYLEVFES-----------------------HGTET-DRVLKHSGPDS 36
Query: 172 MEHTE--ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E
Sbjct: 37 ADSAKGGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQEL 96
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A++A+ K K IG RY+E+F S+ E R
Sbjct: 97 AEKALRKHKERIGHRYIEVFKSSQQEVR 124
>gi|449499514|ref|XP_002192774.2| PREDICTED: G-rich sequence factor 1 [Taeniopygia guttata]
Length = 402
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 28/216 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VV LRGLPF T+ DI FF+GL I D+ + + R +GEAFV FA P AL R R+
Sbjct: 178 VVLLRGLPFTSTEEDIADFFSGLKITDIAFIYRGDRRTGEAFVQFATPEMAAKALLRHRE 237
Query: 120 NMGRRYVEVFRCKRQDY-------------------YNAVASEVNYEGIYDNDFHGSPPP 160
MG RY+EV+ ++ Y +++ + + + G
Sbjct: 238 YMGSRYIEVYVSRKHQMQRHMPYSKQLTAYSRARREYESISEDRGWRDTGGSHAEGEINL 297
Query: 161 SRAKRYNDKDQMEH-------TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
SR + + ++ +E + MRG P +I+ FF + +I +
Sbjct: 298 SRERTESSRNVLESENTSSPPQHFVHMRGFPSQASAQDIINFFAPLRPT--RILVEYNSG 355
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
G ATGEA V F S E+A AM KD + +ELF
Sbjct: 356 GDATGEADVHFESHEDAVAAMAKDGSQMECSAIELF 391
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 31/211 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+VR +G PF+CT+ D+ FF I + L+N++GR G+A + V+ AL
Sbjct: 79 LVRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 138
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ + MG RYV+VF ++D+D G R D+ Q
Sbjct: 139 EKHLRYMGPRYVKVFE------------------VHDSDVEGLLQSLR-----DESQAMS 175
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ +RGLPF+ + +I FF KI + I R D + TGEA+V+F + E A +A+
Sbjct: 176 DGVVLLRGLPFTSTEEDIADFFSGLKITD--IAFIYRGD-RRTGEAFVQFATPEMAAKAL 232
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ + +GSRY+E++ S + +R S+Q
Sbjct: 233 LRHREYMGSRYIEVYVSRKHQMQRHMPYSKQ 263
>gi|344244475|gb|EGW00579.1| G-rich sequence factor 1 [Cricetulus griseus]
Length = 621
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 297 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 356
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 357 REEIGNRYIEIFPSRRNEVRTHVGSHKAKKMVSSPTAKYITEPEVVFEEHEVNEDIRPMT 416
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D M + MRGLPF +I+ FF K + +
Sbjct: 417 AFESDKEIELPKEMSEKLPETVDFGSMPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 474
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTI 241
I + GKATGEA V F + E+A AM KD+ +
Sbjct: 475 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHV 510
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 23/170 (13%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D + S
Sbjct: 230 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKS----- 284
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207
H P M + ++++RGLP+S + +IV FF I++
Sbjct: 285 ------LHVKSSP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFV 327
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+ R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 328 MDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 376
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 444 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 503
Query: 115 QRDRQNM 121
+DR ++
Sbjct: 504 LKDRSHV 510
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 203 EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
E+ IH DGK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 225 ENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 271
>gi|194383864|dbj|BAG59290.1| unnamed protein product [Homo sapiens]
Length = 338
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 96 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 155
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 156 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 215
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 216 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 273
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 274 NMQHRYIELFLNSTTGASNGAYSSQ 298
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RY+EVF+ R +E+++ + P+ A ND +++
Sbjct: 1 MGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG-------FVRL 38
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K K
Sbjct: 39 RGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 98
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ +E R
Sbjct: 99 IGHRYIEVFKSSQEEVR 115
>gi|195037855|ref|XP_001990376.1| GH18272 [Drosophila grimshawi]
gi|193894572|gb|EDV93438.1| GH18272 [Drosophila grimshawi]
Length = 622
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 38/219 (17%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVV 103
G P F +RLRGLP++ T +I F +++++ + LV +G+ +GEA+V
Sbjct: 54 GDVGESPKF--IRLRGLPWSATHKEILDFLVNVEVINGSQGIHLVTSRVDGKNTGEAYVE 111
Query: 104 FAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA 163
A VE A + ++ +MG RY+EVF + P A
Sbjct: 112 VASQEDVEEARKLNKVSMGHRYIEVF---------------------------TATPKEA 144
Query: 164 KRYNDKDQME-HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEA 220
K K H ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA
Sbjct: 145 KEAMRKTGGHGHAFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEA 204
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+V+F S ++ ++A+ +++ IG RY+E+F S+ E +RA
Sbjct: 205 FVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 243
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVS 226
D E + +++RGLP+S EI+ F + ++I IH + R DGK TGEAYVE S
Sbjct: 55 DVGESPKFIRLRGLPWSATHKEILDFLVNVEVINGSQGIHLVTSRVDGKNTGEAYVEVAS 114
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
E+ + A +K+++G RY+E+F +TP EA+ A ++
Sbjct: 115 QEDVEEARKLNKVSMGHRYIEVFTATPKEAKEAMRKT 151
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+N + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 520 TIHMRGLPYNSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKRHR 579
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 580 EQMGSRYIELF 590
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF+ + +I+ + T +AY F + E+++ AM +
Sbjct: 521 IHMRGLPYNSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAY--FDTYEDSQLAMKRH 578
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 579 REQMGSRYIELF 590
>gi|159485042|ref|XP_001700558.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158272198|gb|EDO98002.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 229
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 9/197 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-VDVLLVNK--NGRFSGEAFVVFAGPIQVEFALQR 116
VV+++GLPF + DI KFFAG + + + + K +GR +GEAFVVF + A Q+
Sbjct: 35 VVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSDEARRATQK 94
Query: 117 DRQNMGR----RYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
DR+ G RYV V+ D + A+ + + +D P + + +
Sbjct: 95 DRETFGEKFGDRYVRVYPTLDSDIPDMQAAPNGVQLVVRSD--NKPTGEKDHKVFSEKFG 152
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ +LKM+G+PF ++ +FF +YKI + + DG+ TG A++EF + +EA R
Sbjct: 153 DRYGVLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEFETPQEAVR 212
Query: 233 AMCKDKMTIGSRYVELF 249
AM KD+ G Y + F
Sbjct: 213 AMEKDRAKFGPEYGDRF 229
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++KM+GLPF K +I++FF + + + + + PDG+ GEA+V F + +EA+RA K
Sbjct: 35 VVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSDEARRATQK 94
Query: 237 DKMT----IGSRYVELFPS 251
D+ T G RYV ++P+
Sbjct: 95 DRETFGEKFGDRYVRVYPT 113
>gi|335775266|gb|AEH58514.1| heterogeneous nuclear ribonucleoprotein-like protein [Equus
caballus]
Length = 337
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 96 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 155
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 156 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 215
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 216 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 273
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 274 NMQHRYIELFLNSTTGASNGAYSSQ 298
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RY+EVF+ R +E+++ + P+ A ND +++
Sbjct: 1 MGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG-------FVRL 38
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K K
Sbjct: 39 RGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 98
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ +E R
Sbjct: 99 IGHRYIEVFKSSQEEVR 115
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 214 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 273
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 274 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 303
>gi|332819574|ref|XP_526590.3| PREDICTED: G-rich sequence factor 1 [Pan troglodytes]
Length = 547
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 101/216 (46%), Gaps = 36/216 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 333 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 392
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 393 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 452
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 453 AFESEKEIELPKEVPEKLPEAADFGTASSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 510
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTI 241
I + GKATGEA V F + E+A AM KD+ +
Sbjct: 511 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHV 546
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 233 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 292
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S ND
Sbjct: 293 EKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVND--------------------- 331
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 332 -GVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 389
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 390 LKHREEIGNRYIEIFPSRRNEVR 412
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 158 PPPSRAKRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPD 213
PPP + K ++++ +++ +GLP+S +++ FF D +I E+ IH D
Sbjct: 212 PPPPECELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 271
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
GK G+A +E S ++ ++A+ K +M +G RYVE++
Sbjct: 272 GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 307
>gi|74202595|dbj|BAE24862.1| unnamed protein product [Mus musculus]
Length = 171
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 27/182 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CK 236
K
Sbjct: 170 KK 171
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI + +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
>gi|195395450|ref|XP_002056349.1| GJ10899 [Drosophila virilis]
gi|194143058|gb|EDW59461.1| GJ10899 [Drosophila virilis]
Length = 615
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 38/219 (17%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVV 103
G P F +RLRGLP++ T +I F +++++ + LV +G+ +GEA+V
Sbjct: 54 GNVGESPKF--IRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRVDGKNTGEAYVE 111
Query: 104 FAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA 163
A VE A + ++ +MG RY+EVF VA+ P A
Sbjct: 112 VASQDDVEEARKLNKASMGHRYIEVF----------VAT-----------------PKEA 144
Query: 164 KRYNDKDQME-HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEA 220
K K H ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA
Sbjct: 145 KEAMRKTGGHGHAFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEA 204
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+V+F S ++ ++A+ +++ IG RY+E+F S+ E +RA
Sbjct: 205 FVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 243
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F + +++ IH + R DGK TGEAYVE S ++
Sbjct: 58 ESPKFIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRVDGKNTGEAYVEVASQDD 117
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ A +K ++G RY+E+F +TP EA+ A ++
Sbjct: 118 VEEARKLNKASMGHRYIEVFVATPKEAKEAMRKT 151
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+N + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 506 TIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKRHR 565
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 566 EQMGSRYIELF 576
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF I + I G +G A F + ++++ AM +
Sbjct: 507 IHMRGLPYNSFENDVFKFFD--PIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKRH 564
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 565 REQMGSRYIELF 576
>gi|195108109|ref|XP_001998635.1| GI24079 [Drosophila mojavensis]
gi|193915229|gb|EDW14096.1| GI24079 [Drosophila mojavensis]
Length = 605
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 38/219 (17%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVV 103
G P F +RLRGLP++ T +I F +++++ + LV +G+ +GEA+V
Sbjct: 52 GSVGESPKF--IRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRLDGKNTGEAYVE 109
Query: 104 FAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA 163
A VE A + ++ +MG RY+EVF VA+ P A
Sbjct: 110 VASQEDVEEARKLNKASMGHRYIEVF----------VAT-----------------PKEA 142
Query: 164 KRYNDKDQME-HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEA 220
K K H ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA
Sbjct: 143 KEAMRKTGGHGHAFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEA 202
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+V+F S ++ ++A+ +++ IG RY+E+F S+ E +RA
Sbjct: 203 FVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 241
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F + +++ IH + R DGK TGEAYVE S E+
Sbjct: 56 ESPKFIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRLDGKNTGEAYVEVASQED 115
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ A +K ++G RY+E+F +TP EA+ A ++
Sbjct: 116 VEEARKLNKASMGHRYIEVFVATPKEAKEAMRKT 149
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+N + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 486 TIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKRHR 545
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 546 EQMGSRYIELF 556
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF I + I G +G A F + ++++ AM +
Sbjct: 487 IHMRGLPYNSFENDVFKFFD--PIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKRH 544
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 545 REQMGSRYIELF 556
>gi|193636729|ref|XP_001950119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 440
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 37/218 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV--------LLVNKNGRFSGEAFVVFAGPIQVE 111
VV++ GL + T DI KF L V +N+ G+ S +A+V ++
Sbjct: 24 VVKMHGLSLSTTADDIIKFLNTLGEAKVKDGASGVHFTMNRKGKPSSQAYVEMESEESLK 83
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAV---ASEVNYEGIYDNDFHGSPPPSRAKRYND 168
AL++DR+ MG RY++VF KR + A+ S ++ E +YDN
Sbjct: 84 AALKKDREYMGNRYIKVFPSKRSEMEWAIKITGSTLDNE-LYDN---------------- 126
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLPF K+EIV+FF+ +I D I I G+ EA+V+FV+ E
Sbjct: 127 --------CVRIRGLPFDYTKNEIVEFFQGLEITPDDITIVINSKGRRMKEAFVQFVNRE 178
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARRA-ESRSRQ 265
++A+ K I RY+E+F S+ E R++ + RSRQ
Sbjct: 179 NLEKALQKHMEKIRFRYIEVFRSSLVEIRKSLKRRSRQ 216
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 63/239 (26%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VR+RGLPF+ T +I +FF GL+I D+ +++N GR EAFV F +E ALQ+
Sbjct: 128 VRIRGLPFDYTKNEIVEFFQGLEITPDDITIVINSKGRRMKEAFVQFVNRENLEKALQKH 187
Query: 118 RQNMGRRYVEVFRCK------------RQDYYNAVAS---------------EVNYEGIY 150
+ + RY+EVFR RQ Y+ + S +++
Sbjct: 188 MEKIRFRYIEVFRSSLVEIRKSLKRRSRQTPYDRMDSFASSGGNSGGRGQYIDMSMRTER 247
Query: 151 DNDFHGS--------------------PPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKS 190
D GS P PSR ++ M+GLP K+
Sbjct: 248 DMRSFGSGRSMGRPRGGSRGGASKNWNPSPSRP-----------LHVVHMKGLPLKANKN 296
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+I +FF+ K + + GEA VEF ++E+A +AM K+K + RY+ELF
Sbjct: 297 DIAKFFEPLKPVNIHFIFNNNN--QPYGEANVEFGNIEDAVQAMSKNKTFMEHRYIELF 353
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 52 FPPPPSFP--VVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPI 108
+ P PS P VV ++GLP DI KFF L + + N N + GEA V F
Sbjct: 273 WNPSPSRPLHVVHMKGLPLKANKNDIAKFFEPLKPVNIHFIFNNNNQPYGEANVEFGNIE 332
Query: 109 QVEFALQRDRQNMGRRYVEVF 129
A+ +++ M RY+E+F
Sbjct: 333 DAVQAMSKNKTFMEHRYIELF 353
>gi|198454671|ref|XP_002137931.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
gi|198132901|gb|EDY68489.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
Length = 610
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 36/212 (16%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F +RLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 51 PKF--IRLRGLPWSATHKEILDFLENVNVTNASQGIHLVTSRVDGKNTGEAYVEVATQED 108
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF ++ A+ G + N F
Sbjct: 109 VEEARKLNKASMGHRYIEVFTATPKEAKEAMRKI----GGHGNAF--------------- 149
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSV 227
++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 150 -------VVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQFESQ 202
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
E+ ++A+ +++ IG RY+E+F S+ E +RA
Sbjct: 203 EDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 234
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE + E+
Sbjct: 49 ESPKFIRLRGLPWSATHKEILDFLENVNVTNASQGIHLVTSRVDGKNTGEAYVEVATQED 108
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 109 VEEARKLNKASMGHRYIEVFTATPKEAKEA 138
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 498 TIHMRGLPYTSFENDVFKFFEPVRPANVRINYNKKGLHSGTADAYFDTYEDSQIAMKRHR 557
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 558 EQMGSRYIELF 568
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ MRGLP++ ++++ +FF+ + +I+ + T +AY F + E+++ AM +
Sbjct: 498 TIHMRGLPYTSFENDVFKFFEPVRPANVRINYNKKGLHSGTADAY--FDTYEDSQIAMKR 555
Query: 237 DKMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 556 HREQMGSRYIELF 568
>gi|63991866|gb|AAY40942.1| unknown [Homo sapiens]
gi|119626039|gb|EAX05634.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Homo sapiens]
Length = 435
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 125 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 184
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 185 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 231
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 232 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 283 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGS 335
>gi|449280564|gb|EMC87832.1| G-rich sequence factor 1, partial [Columba livia]
Length = 331
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VV LRGLPF+ T+ DI FF+GL I D+ V + R +GEAFV FA P AL R R+
Sbjct: 108 VVMLRGLPFSSTEDDIADFFSGLKITDIAFVYRGERRTGEAFVQFAAPDMAAKALSRHRE 167
Query: 120 NMGRRYVEVFRCKRQDY-------------------YNAVASEVNYEGIYDNDFHGSPPP 160
MG RY+EV+ ++ + +V+ E + +D G
Sbjct: 168 YMGNRYIEVYVSRKHQMQRHVPYHRQLLTYPKVRKEHESVSEERRWSDTASSDAEGENQV 227
Query: 161 SRAKRYNDKDQMEHTEI------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG 214
R + E + + MRG P +I+ FF K + C G
Sbjct: 228 CREQTERPGHISESESVSSPLHFVHMRGFPAQTSAQDIINFFAPLKPTRIMVEYNCH--G 285
Query: 215 KATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
ATGEA V F S E+A AM K+ + +ELF
Sbjct: 286 DATGEADVHFESREDAVAAMAKEGSRLQCSAIELF 320
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 31/211 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +G PF+CT+ D+ FF I + L+N++GR G+A + V+ AL
Sbjct: 9 LIRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ + MG RYV+VF + H S S + D+ Q +
Sbjct: 69 EKHLRYMGPRYVKVF-----------------------EVHDSDVESLLRSLRDESQAIN 105
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ +RGLPFS + +I FF KI + I R + + TGEA+V+F + + A +A+
Sbjct: 106 DGVVMLRGLPFSSTEDDIADFFSGLKITD--IAFVYRGE-RRTGEAFVQFAAPDMAAKAL 162
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ + +G+RY+E++ S + +R RQ
Sbjct: 163 SRHREYMGNRYIEVYVSRKHQMQRHVPYHRQ 193
>gi|302850710|ref|XP_002956881.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
gi|300257762|gb|EFJ42006.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
Length = 628
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-VDVLLVNK--NGRFSGEAFVVFAGPIQVEFALQR 116
VV+++GLPF DI KFFAG + D + + K +GR +GEAFVVF + A Q+
Sbjct: 29 VVKMKGLPFKGGKEDIIKFFAGFTVRPDQVFLRKHPDGRPNGEAFVVFEDSDEARRATQK 88
Query: 117 DRQNMGR----RYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
DR+ G RYV V+ D + A+ + H +A+ +
Sbjct: 89 DRETFGEKFGDRYVRVYPTLDSDIPDMQAA------VAQAQLH-----EQAQGSGNHGHG 137
Query: 173 EHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
H++ ++K++ LPF + +I+QFF+++K+ + + + R D K TGEA+V+F + EEA
Sbjct: 138 AHSDSVVKIKSLPFDATQLDIIQFFENFKLKPNGVQLVVRSDNKPTGEAFVDFETPEEAA 197
Query: 232 RAMCKDKMTI-----GSRYVELF 249
R++ + + G RYV L
Sbjct: 198 RSIKEKDHKVFSEKFGDRYVRLI 220
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VV+++ LPF+ T +DI +FF + L+V + + +GEAFV F P + +++
Sbjct: 143 VVKIKSLPFDATQLDIIQFFENFKLKPNGVQLVVRSDNKPTGEAFVDFETPEEAARSIKE 202
Query: 117 D-----RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
+ G RYV + + R++ +A EG+
Sbjct: 203 KDHKVFSEKFGDRYVRLIQVSRKEMQATLALRFGGEGV---------------------- 240
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
LKM+G+PF ++ +FF YK+ + + DG+ TG A++EF + +EA
Sbjct: 241 ------LKMKGIPFKATAVDVRKFFTGYKVKTEGVSFIMHADGRPTGMAFIEFETPQEAV 294
Query: 232 RAMCKDKMTIGSRYVELF 249
RAM KD+ G Y + F
Sbjct: 295 RAMEKDRAKFGPEYGDRF 312
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++KM+GLPF K +I++FF + + D++ + PDG+ GEA+V F +EA+RA K
Sbjct: 29 VVKMKGLPFKGGKEDIIKFFAGFTVRPDQVFLRKHPDGRPNGEAFVVFEDSDEARRATQK 88
Query: 237 DKMTIGS----RYVELFPS 251
D+ T G RYV ++P+
Sbjct: 89 DRETFGEKFGDRYVRVYPT 107
>gi|312081197|ref|XP_003142925.1| RNA binding protein [Loa loa]
gi|307761913|gb|EFO21147.1| RNA binding protein [Loa loa]
Length = 547
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 23/207 (11%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFA 113
P + +RLRGLPF+ + D+ F GL++ V + GR SGE +V E A
Sbjct: 57 PNTSNYIRLRGLPFSAKEDDVRAFLEGLEVRSVTFTLTSMGRASGECYVELVDKAAAEEA 116
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
+ D+Q M RY+EVF N SEV + ++ R D+D
Sbjct: 117 KRFDKQEMNNRYIEVF--------NVTESEVVWMTRHN-----------VIRKGDQD-TP 156
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ ++++RG+PFS ++ +FF ++ + + I G+ +GEA+V F S + A+ A
Sbjct: 157 YNFVVRLRGIPFSATNDDVKEFFTGLEVAD--VVIDKELGGRPSGEAFVRFASKQHAEMA 214
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAE 260
+ +++ +GSRYVE+F S+ DE +++
Sbjct: 215 LERNRNNMGSRYVEVFRSSGDELEKSK 241
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+S +I FFK +E I + D + +G+A V F ++ EA+ AM ++K
Sbjct: 334 MRGLPYSANALDIEDFFKPLNCVE--IQLGFNEDRRPSGDACVIFGTLAEARDAMSRNKQ 391
Query: 240 TIGSRYVELFPS 251
IG+RY+ELF +
Sbjct: 392 CIGNRYIELFTA 403
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP++ +DI FF L+ V++ L N++ R SG+A V+F + A+ R++Q
Sbjct: 332 VYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTLAEARDAMSRNKQ 391
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 392 CIGNRYIELF 401
>gi|45709575|gb|AAH67720.1| Zgc:85960 protein [Danio rerio]
Length = 302
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 100/205 (48%), Gaps = 32/205 (15%)
Query: 75 ICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
+C FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+
Sbjct: 18 LCSFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKS 77
Query: 132 KRQD---YYNAVASEVNYE--GIYD---NDFHGSPPPSRAK-----------------RY 166
R + +Y + + G YD G SR RY
Sbjct: 78 SRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFDRMRRGGYGGGVSDGRY 137
Query: 167 NDKDQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
D + T + MRGLP+ + +I FF + ++HI PDG+ TGEA VEF
Sbjct: 138 GDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEF 195
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELF 249
+ E+A AM KDK + RYVELF
Sbjct: 196 ATHEDAVAAMSKDKANMQHRYVELF 220
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG F V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 137 YGDGGNFQSTTGH-CVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 195
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 196 ATHEDAVAAMSKDKANMQHRYVELF 220
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
V + + FF +I+ + I + G++TGEA+V+F S + A++A+ K K IG R
Sbjct: 11 LDVARKRLCSFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHR 70
Query: 245 YVELFPSTPDEAR 257
Y+E+F S+ E R
Sbjct: 71 YIEIFKSSRAEVR 83
>gi|148670393|gb|EDL02340.1| mCG50680 [Mus musculus]
Length = 338
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 96 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 155
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 156 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 215
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGL + +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 216 MRGLSYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 273
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 274 NMQHRYIELFLNSTTGASNGAYSSQ 298
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 22/137 (16%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RY+EVF+ R +E+++ + P+ A ND +++
Sbjct: 1 MGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG-------FVRL 38
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K K
Sbjct: 39 RGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKER 98
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ +E R
Sbjct: 99 IGHRYIEVFKSSQEEVR 115
>gi|195445396|ref|XP_002070305.1| GK11105 [Drosophila willistoni]
gi|194166390|gb|EDW81291.1| GK11105 [Drosophila willistoni]
Length = 642
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 113/212 (53%), Gaps = 36/212 (16%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F +RLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 53 PKF--IRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVASQED 110
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF ++ A+ G + N F
Sbjct: 111 VEEARKLNKASMGHRYIEVFTATPKEAKEAMRKI----GGHANAF--------------- 151
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSV 227
++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 152 -------VVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVTDRRGRATGEAFVQFESQ 204
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
++ ++A+ +++ IG RY+E+F S+ E +RA
Sbjct: 205 DDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 236
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 51 ESPKFIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVASQED 110
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 111 VEEARKLNKASMGHRYIEVFTATPKEAKEA 140
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQR 116
+ + +RGLP+ + D+ KFF + +V + NK G SG A F + A++R
Sbjct: 521 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKR 580
Query: 117 DRQNMGRRYVEVF 129
R+ MG RY+E+F
Sbjct: 581 HREQMGSRYIELF 593
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF+ I + I G +G A F + E+++ AM +
Sbjct: 524 IHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKRH 581
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 582 REQMGSRYIELF 593
>gi|431900090|gb|ELK08023.1| G-rich sequence factor 1 [Pteropus alecto]
Length = 380
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 43/247 (17%)
Query: 31 NPYFAVSSSASGFQP-YGYGGGFPPPPSFPV--------------VRLRGLPFNCTDIDI 75
+P+F + + ++ Y PP P + + +R +GLP++CT D+
Sbjct: 2 SPHFLTTQFLTLWESKTTYLEELPPLPEYELAPSKLGGEVDDVYLIRAQGLPWSCTVEDV 61
Query: 76 CKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
FF+ I + L+N++G+ G+A + V+ AL++ R MG+RYVEV+
Sbjct: 62 LSFFSDCRIHNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 121
Query: 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKS 190
+D + + N S P ND ++++RGLP+S +
Sbjct: 122 INNEDV----------DALMKNLQVKSSPV-----VNDG-------VVRLRGLPYSCNEK 159
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
+IV FF I++ + R K TGEAYV+F E A +A+ K + IG+RY+E+FP
Sbjct: 160 DIVDFFAGLNIVDITFVMDFRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFP 218
Query: 251 STPDEAR 257
S +E R
Sbjct: 219 SRRNEVR 225
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 99/213 (46%), Gaps = 36/213 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 146 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDFRGRRKTGEAYVQFEEPEMANQALLKH 205
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS------------------EVNYEGIYDND------ 153
R+ +G RY+E+F +R + V S EV +E N+
Sbjct: 206 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEVVFEEHEVNEDIQPMT 265
Query: 154 -FHGSPPPSRAKRYNDK-------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
F K ++K + MRGLPF +I+ FF K + +
Sbjct: 266 AFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 323
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
I + GKATGEA V F + E+A AM KD+
Sbjct: 324 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDR 356
>gi|428185861|gb|EKX54712.1| hypothetical protein GUITHDRAFT_57099, partial [Guillardia theta
CCMP2712]
Length = 203
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 6/202 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR+RGLPF+ + DI +FF+GL + +++GR +GEAFV+F + E AL
Sbjct: 1 IVRMRGLPFSVREEDIREFFSGLLVRPHGIFFTSSRDGRPTGEAFVIFERDDEGEKALSL 60
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVAS---EVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
DR++MG RYVEVF+ + D A V P P
Sbjct: 61 DRKHMGTRYVEVFKSNKPDLVRLCAGCVPAVAPSMPPSLPPSLPPHPHPHSHPMPGSLAA 120
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++K+RGLP+S K++++ FF + +++ G+++G+AYVE S EE RA
Sbjct: 121 KDLVVKVRGLPYSAKEADVFDFFCSSNVRPSGVNLIQNARGESSGDAYVELGSEEEVMRA 180
Query: 234 MCKDKMTIGSRYVELFPSTPDE 255
+ + G RY+E+F ++ E
Sbjct: 181 LALHRSNFGHRYLEIFRTSRAE 202
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLPFSV++ +I +FF + I DG+ TGEA+V F +E ++A+
Sbjct: 1 IVRMRGLPFSVREEDIREFFSGLLVRPHGIFFTSSRDGRPTGEAFVIFERDDEGEKALSL 60
Query: 237 DKMTIGSRYVELFPST-PDEAR 257
D+ +G+RYVE+F S PD R
Sbjct: 61 DRKHMGTRYVEVFKSNKPDLVR 82
>gi|26251966|gb|AAH40485.1| GRSF1 protein [Homo sapiens]
Length = 435
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 125 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 184
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 185 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 231
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I+ +
Sbjct: 232 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVYITFVM 282
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 283 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IV + V + R +GEA+V F P AL +
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVYITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
R+ +G RY+E+F +R + V S
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGS 335
>gi|313233607|emb|CBY09778.1| unnamed protein product [Oikopleura dioica]
Length = 425
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 33/208 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL--------LVNKNGRFSGEAFVVFAGPIQVE 111
V+RLRGLP++C ++ +FFA DIVD++ + K GR +GEA++ VE
Sbjct: 21 VIRLRGLPYSCCGAEVVEFFA--DIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVE 78
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
A+ +DR + RY+E+F+ A E++Y + + + P
Sbjct: 79 KAMIKDRTQLQDRYIEIFK--------ATTEEMDY--VLEKTERQANQPWE--------- 119
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++K+RG+P+ I QF ++ I + + G+ TGEA+V+ S E A+
Sbjct: 120 ----NVVKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHEHAE 175
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA 259
+A+ K K I RY+E+F +T E +A
Sbjct: 176 QALLKHKECIDRRYIEVFKATRAEMSQA 203
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEF 112
P VV+LRG+P+ CT I +F LDI V++ + GR +GEAFV E
Sbjct: 117 PWENVVKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHEHAEQ 176
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL + ++ + RRY+EVF+ R + A S N+ + D + S S K
Sbjct: 177 ALLKHKECIDRRYIEVFKATRAEMSQASQSLHNH---CNGDHYYSQQNSSLKGVGLDGVY 233
Query: 173 EHTEILKMRGLPFSVKKSEIVQFF-KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
H +++MRG+PF + ++ FF D++I + I D + TG A V F + E+A+
Sbjct: 234 RH--VVQMRGIPFRATEEQVRSFFGLDFEISAVQFEIGA--DHRPTGRASVAFPTHEDAE 289
Query: 232 RAMCKDKMTIGSRYVELF 249
+AM KDK +G RY+EL
Sbjct: 290 KAMKKDKECMGKRYIELM 307
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD--IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQR 116
VV++RG+PF T+ + FF GLD I V + + R +G A V F E A+++
Sbjct: 236 VVQMRGIPFRATEEQVRSFF-GLDFEISAVQFEIGADHRPTGRASVAFPTHEDAEKAMKK 294
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
D++ MG+RY+E+ Q+ +GI N E+
Sbjct: 295 DKECMGKRYIELMILSSQN--------TPIDGIGPNG-------------------EYLF 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++ MRGLPF V +IV FF I++ IH+ P G TG V F S +E A+ +
Sbjct: 328 MIHMRGLPFRVHARDIVSFFDPIPILD--IHLEMGPKG-PTGAGQVAFFSAQERSDALKR 384
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
DK IG RY+ELF P + A SRS Q
Sbjct: 385 DKENIGDRYIELFAIKPLPS--AHSRSIQ 411
>gi|348520489|ref|XP_003447760.1| PREDICTED: hypothetical protein LOC100697955 [Oreochromis
niloticus]
Length = 1432
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 32/213 (15%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L+ LPF+C+++++ +FF GL + V L+ + GR +G A V F P A++R
Sbjct: 307 VLLQNLPFSCSEVEVREFFRGLGVDAVRLMRDGQGRPTGRAMVKFFSPQDSFEAVKRGGG 366
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--- 176
MG+R++E+ + + + +N +G+ + H S S++ N+ ++H
Sbjct: 367 MMGQRFIEITPGSERQW-----ASLN-DGLAGHAPHNS---SKSNSINESQDLQHRRGNV 417
Query: 177 -------------------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 217
+ ++GLP+ K +I +FFK+ I+ED I+IA P+G+AT
Sbjct: 418 EAGGRDQRARSRSPHRQEFCVYLKGLPYEADKKQIKEFFKNLDIVEDSIYIAYGPNGRAT 477
Query: 218 GEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
GE ++EF S ++ K A+ +GSR++++ P
Sbjct: 478 GEGFLEFKSEQDYKGALGAHMQYMGSRFIQVHP 510
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 15/203 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLP+ I +FF LDIV+ + NGR +GE F+ F + AL
Sbjct: 438 VYLKGLPYEADKKQIKEFFKNLDIVEDSIYIAYGPNGRATGEGFLEFKSEQDYKGALGAH 497
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
Q MG R+++V R+ + + E ++ N
Sbjct: 498 MQYMGSRFIQVHPISRKGMLEKIDAIRKREA------------AQGDGKNQDGLKTPRNC 545
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ +P+++ K ++ F + I ED + + G G+A + + E+A++A
Sbjct: 546 AHITNIPYNISKKDVRAFLEGVGIYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKAERLH 605
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
+ + R + T D+ + E
Sbjct: 606 RQKLNGRDAFVHLVTFDQMKEIE 628
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA-MC 235
I+K++ +PF+V EI+ FF Y+++ + + G TGEA V F S EEA A M
Sbjct: 825 IVKLQNMPFTVTVDEIMDFFYGYQVLPGSVCLQFNEKGLPTGEAMVAFQSHEEATAAVMD 884
Query: 236 KDKMTIGSRYVEL 248
+ IG+R V++
Sbjct: 885 LNDRPIGARKVKI 897
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+I V L S+ E + SR+
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSRR 88
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL+GLP +DI FF+GL I D V +V G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV---GGEHGEAFIVFATDEDARLGMMRT 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV 140
++ V + + + N +
Sbjct: 61 GGSIKGSKVSLLLSSKTEMQNMI 83
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
++ LPFS + E+ +FF+ + D + + G+ TG A V+F S +++ A+ +
Sbjct: 309 LQNLPFSCSEVEVREFFRGLGV--DAVRLMRDGQGRPTGRAMVKFFSPQDSFEAVKRGGG 366
Query: 240 TIGSRYVELFPST 252
+G R++E+ P +
Sbjct: 367 MMGQRFIEITPGS 379
>gi|393909284|gb|EFO25784.2| hypothetical protein LOAG_02706 [Loa loa]
Length = 229
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 21/180 (11%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L ++ GR +GEA V F Q E AL+R R + RY+EV+R R D+ A
Sbjct: 10 LCLSPEGRRNGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAG----- 64
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD----YKIIE 203
S A R+ + I++MRGLP+ +++I++FF + K+ +
Sbjct: 65 -----------SNSEAVRFVSRGSTG-AMIVRMRGLPYDCTEAQILEFFAEGENGCKVTD 112
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
I + DG+ TG+A+V F S E ++A+ K K TIG+RY+ELF ST E ++ +R+
Sbjct: 113 GGILFVNKSDGRPTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNRN 172
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 46/204 (22%)
Query: 15 SDGYEVGSKRQRMMEPNPYFAV---------------SSSASGFQPYGYGGGFPPPPSFP 59
S+ E+ +R R N Y V +S A F G G
Sbjct: 29 SEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAGSNSEAVRFVSRGSTGAM------- 81
Query: 60 VVRLRGLPFNCTDIDICKFFA----GLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEF 112
+VR+RGLP++CT+ I +FFA G + D +L VNK +GR +G+AFV+F +
Sbjct: 82 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDSEEAGQK 141
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL + ++ +G RY+E+FR + + V N E HGS
Sbjct: 142 ALTKHKRTIGTRYIELFRSTQAEVQQVVNR--NLENDQRMIVHGSSRK------------ 187
Query: 173 EHTEILKMRGLPFSVKKSEIVQFF 196
+ +++RGLP+ IV+F
Sbjct: 188 ---DCIRLRGLPYEAHVENIVEFL 208
>gi|312070751|ref|XP_003138291.1| hypothetical protein LOAG_02706 [Loa loa]
Length = 224
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 21/180 (11%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L ++ GR +GEA V F Q E AL+R R + RY+EV+R R D+ A
Sbjct: 5 LCLSPEGRRNGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAG----- 59
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD----YKIIE 203
S A R+ + I++MRGLP+ +++I++FF + K+ +
Sbjct: 60 -----------SNSEAVRFVSRGSTG-AMIVRMRGLPYDCTEAQILEFFAEGENGCKVTD 107
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
I + DG+ TG+A+V F S E ++A+ K K TIG+RY+ELF ST E ++ +R+
Sbjct: 108 GGILFVNKSDGRPTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNRN 167
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 46/204 (22%)
Query: 15 SDGYEVGSKRQRMMEPNPYFAV---------------SSSASGFQPYGYGGGFPPPPSFP 59
S+ E+ +R R N Y V +S A F G G
Sbjct: 24 SEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAGSNSEAVRFVSRGSTGAM------- 76
Query: 60 VVRLRGLPFNCTDIDICKFFA----GLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEF 112
+VR+RGLP++CT+ I +FFA G + D +L VNK +GR +G+AFV+F +
Sbjct: 77 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDSEEAGQK 136
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL + ++ +G RY+E+FR + + V N E HGS
Sbjct: 137 ALTKHKRTIGTRYIELFRSTQAEVQQVVNR--NLENDQRMIVHGSSRK------------ 182
Query: 173 EHTEILKMRGLPFSVKKSEIVQFF 196
+ +++RGLP+ IV+F
Sbjct: 183 ---DCIRLRGLPYEAHVENIVEFL 203
>gi|195329730|ref|XP_002031563.1| GM26067 [Drosophila sechellia]
gi|194120506|gb|EDW42549.1| GM26067 [Drosophila sechellia]
Length = 563
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 38/211 (18%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 48 PKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF + P AK K
Sbjct: 106 VEEARKLNKASMGHRYIEVF---------------------------TATPKEAKEAMRK 138
Query: 170 DQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVS 226
T ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 139 ISGHGTAFVVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
++ ++A+ +++ IG RY+E+F S+ E +
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEMK 229
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 46 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 106 VEEARKLNKASMGHRYIEVFTATPKEAKEA 135
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 458 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHR 517
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 518 EQMGSRYIELF 528
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF+ + +I+ + T +AY F + E+++ AM +
Sbjct: 459 IHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAY--FDTYEDSQVAMKRH 516
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 517 REQMGSRYIELF 528
>gi|194901932|ref|XP_001980505.1| GG17187 [Drosophila erecta]
gi|190652208|gb|EDV49463.1| GG17187 [Drosophila erecta]
Length = 595
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 38/211 (18%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 48 PKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF + P AK K
Sbjct: 106 VEEARKLNKASMGHRYIEVF---------------------------TATPKEAKEAMRK 138
Query: 170 DQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVS 226
T ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 139 ISGHGTAFVVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
++ ++A+ +++ IG RY+E+F S+ E +
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEMK 229
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 46 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 106 VEEARKLNKASMGHRYIEVFTATPKEAKEA 135
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 482 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHR 541
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 542 EQMGSRYIELF 552
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF+ + +I+ + T +AY F + E+++ AM +
Sbjct: 483 IHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAY--FDTYEDSQVAMKRH 540
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 541 REQMGSRYIELF 552
>gi|195571637|ref|XP_002103809.1| GD20630 [Drosophila simulans]
gi|194199736|gb|EDX13312.1| GD20630 [Drosophila simulans]
Length = 587
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 38/211 (18%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 48 PKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF + P AK K
Sbjct: 106 VEEARKLNKASMGHRYIEVF---------------------------TATPKEAKEAMRK 138
Query: 170 DQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVS 226
T ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 139 ISGHGTAFVVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
++ ++A+ +++ IG RY+E+F S+ E +
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEMK 229
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 46 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 106 VEEARKLNKASMGHRYIEVFTATPKEAKEA 135
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 482 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHR 541
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 542 EQMGSRYIELF 552
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF+ + +I+ + T +AY F + E+++ AM +
Sbjct: 483 IHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAY--FDTYEDSQVAMKRH 540
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 541 REQMGSRYIELF 552
>gi|195501785|ref|XP_002097942.1| GE10080 [Drosophila yakuba]
gi|194184043|gb|EDW97654.1| GE10080 [Drosophila yakuba]
Length = 597
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 38/211 (18%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 49 PKF--VRLRGLPWSATHKEILDFLENVNVTNGSSGIHLVTSRVDGKNTGEAYVEVASQED 106
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF + P AK K
Sbjct: 107 VEEARKLNKASMGHRYIEVF---------------------------TATPKEAKEAMRK 139
Query: 170 DQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVS 226
T ++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 140 ISGHGTAFVVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 199
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
++ ++A+ +++ IG RY+E+F S+ E +
Sbjct: 200 QDDTEQALGRNREKIGHRYIEIFRSSIAEMK 230
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 47 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSSGIHLVTSRVDGKNTGEAYVEVASQED 106
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 107 VEEARKLNKASMGHRYIEVFTATPKEAKEA 136
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 485 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHR 544
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 545 EQMGSRYIELF 555
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP++ ++++ +FF+ + +I+ + T +AY F + E+++ AM +
Sbjct: 486 IHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAY--FDTYEDSQVAMKRH 543
Query: 238 KMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 544 REQMGSRYIELF 555
>gi|196003222|ref|XP_002111478.1| hypothetical protein TRIADDRAFT_13868 [Trichoplax adhaerens]
gi|190585377|gb|EDV25445.1| hypothetical protein TRIADDRAFT_13868, partial [Trichoplax
adhaerens]
Length = 302
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 16/210 (7%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGL-DIVD-----VLLVNKNGRFSGEAFVVFAGPIQ 109
P ++R++GLP ID+ FF G D++D +LL++ +GR +GE +V F P
Sbjct: 100 PEIALLRIKGLPSTVIAIDVVNFFKGTADVLDNEEGVLLLLSADGRTTGEGYVAFKTPEI 159
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
A+ +D + M ++E++ C D A+ ND K
Sbjct: 160 ARSAIYKDYKIMANHHIELYDCSLNDALKALQESHISSSYRKND-------KILTNLRQK 212
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSV 227
Q + +++RGLPF+ + +I F + KI + IH+ G+ +G+AY++ +S
Sbjct: 213 SQESVRDCIRLRGLPFTATEPDITNFMGELADKIALNGIHLCINDRGRPSGDAYIQMLSA 272
Query: 228 EEA-KRAMCKDKMTIGSRYVELFPSTPDEA 256
E+A K A K + +G+R++E+F + +E
Sbjct: 273 EDAIKSAEKKHREHLGTRWIEVFQCSREEV 302
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 107/210 (50%), Gaps = 22/210 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V++ LP D D+ FF GL+I+ L+++ G+ G+A+V F +Q + AL+R
Sbjct: 1 VKVCDLPTYLNDQDVASFFRGLNIIRGGISFLLSEYGKRYGQAYVKFEDTVQRDLALKRH 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
Q + ++ + +++ +N + + G+ + + ND+ ++ +
Sbjct: 61 SQYIDQKSIRIYK-------------INAGQGFIPNVGGATIVNALMKSNDRPEIA---L 104
Query: 178 LKMRGLPFSVKKSEIVQFFK---DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
L+++GLP +V ++V FFK D E+ + + DG+ TGE YV F + E A+ A+
Sbjct: 105 LRIKGLPSTVIAIDVVNFFKGTADVLDNEEGVLLLLSADGRTTGEGYVAFKTPEIARSAI 164
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESRSR 264
KD + + ++EL+ + ++A +A S
Sbjct: 165 YKDYKIMANHHIELYDCSLNDALKALQESH 194
>gi|24646105|ref|NP_650120.1| glorund, isoform A [Drosophila melanogaster]
gi|24646107|ref|NP_731639.1| glorund, isoform B [Drosophila melanogaster]
gi|7299517|gb|AAF54704.1| glorund, isoform A [Drosophila melanogaster]
gi|7299518|gb|AAF54705.1| glorund, isoform B [Drosophila melanogaster]
gi|19528177|gb|AAL90203.1| AT27789p [Drosophila melanogaster]
Length = 586
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 38/211 (18%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 48 PKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF + P AK K
Sbjct: 106 VEEARKLNKASMGHRYIEVF---------------------------TATPKEAKEAMRK 138
Query: 170 DQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVS 226
T ++K+RGLP++V + +I +FF I D+ I D G+ATGEA+V+F S
Sbjct: 139 ISGHGTAFVVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
++ ++A+ +++ IG RY+E+F S+ E +
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEMK 229
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 46 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 106 VEEARKLNKASMGHRYIEVFTATPKEAKEA 135
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 482 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHR 541
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 542 EQMGSRYIELF 552
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ MRGLP++ ++++ +FF+ I + I G +G A F + E+++ AM +
Sbjct: 482 TIHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 237 DKMTIGSRYVELF 249
+ +GSRY+ELF
Sbjct: 540 HREQMGSRYIELF 552
>gi|291232395|ref|XP_002736145.1| PREDICTED: RNA binding motif protein 12-like [Saccoglossus
kowalevskii]
Length = 983
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 15/201 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI-VDVLLVNKN--GRFSGEAFVVFAGPIQVEFALQRD 117
VRL+GLPF+ +D +I KFFAGL+I D + ++ + G+ +G+ FV F + + AL+R
Sbjct: 471 VRLQGLPFSSSDENIKKFFAGLEIDRDGIRISTDSFGKRTGDGFVKFRNQMDHQEALKRS 530
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-FHGSPPPSRAKRYNDKDQMEHTE 176
+ MG RY++V C + + + A ++E + D FH A ++ +
Sbjct: 531 MKYMGTRYIKVIPCPEKVWASCGA---DFERRHSRDAFHSDRQHQDAPNFSSRSSHRSRS 587
Query: 177 --------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ +RGLPF S I FFK + E+ I + G G YVEF +V
Sbjct: 588 RSPIRDSLCVSLRGLPFVTNTSHIFDFFKGLDVPEENIFLEVNEKGNCKGAGYVEFKTVH 647
Query: 229 EAKRAMCKDKMTIGSRYVELF 249
+ ++A+ +++ IG+R+V +
Sbjct: 648 DFRKALARNRQYIGTRFVTVM 668
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V LRGLPF I FF GLD+ + L VN+ G G +V F AL R+
Sbjct: 597 VSLRGLPFVTNTSHIFDFFKGLDVPEENIFLEVNEKGNCKGAGYVEFKTVHDFRKALARN 656
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNY-EGIYDNDFHGSPPPSRAKRYNDKDQME--- 173
RQ +G R+V V ++D + S N+ + + P S K+ +D++E
Sbjct: 657 RQYIGTRFVTVMAIAKEDMKAQIRSHPNWMRTVSQMSTAPATPTSDDKKLPLEDKIEPPK 716
Query: 174 ------------------HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
++M+ +P++ + EI+ F I+ I G
Sbjct: 717 DDVKEKGSSENAPKSITDEGTCIRMKNIPYASNRGEILHFLSGIAIVHQGIERTYNEKGL 776
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
T EAY+EF SVE+AKRA +++ I R +
Sbjct: 777 HTDEAYIEFYSVEDAKRAEARNEGKIRDRTI 807
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
T I++++GLP++ ++ FFK I + +HI G +G+A++ F EEA++AM
Sbjct: 2 TIIIRLQGLPWAASALDVRHFFKGLTIPDGGVHIV----GGESGDAFIAFGGDEEARKAM 57
Query: 235 CKDKMTIGSRYVELFPSTPDE-------ARRAESRSR 264
+ + L S+ E +R A++R R
Sbjct: 58 LITNQPLCGSKITLMLSSKSEMQNVIAASRAAQARKR 94
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++ +P+S +I+ FF Y ++ D + I G+ TG+A V F EA RA+
Sbjct: 908 VVGATNIPYSATIPDILNFFNGYGVLPDSVRIHFNDAGRPTGDALVAFDGPHEANRALRD 967
Query: 237 DKMT-IGSRYVELF 249
T +G R V+L+
Sbjct: 968 LNNTFMGPRKVQLY 981
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++RL+GLP+ + +D+ FF GL I D V +V G SG+AF+ F G + A+
Sbjct: 4 IIRLQGLPWAASALDVRHFFKGLTIPDGGVHIV---GGESGDAFIAFGGDEEARKAMLIT 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
Q + + + + + N +A+
Sbjct: 61 NQPLCGSKITLMLSSKSEMQNVIAA 85
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQR 116
VV +P++ T DI FF G ++ D + + N GR +G+A V F GP + AL R
Sbjct: 908 VVGATNIPYSATIPDILNFFNGYGVLPDSVRIHFNDAGRPTGDALVAFDGPHEANRAL-R 966
Query: 117 DRQN--MGRRYVEVF 129
D N MG R V+++
Sbjct: 967 DLNNTFMGPRKVQLY 981
>gi|341877456|gb|EGT33391.1| hypothetical protein CAEBREN_08325 [Caenorhabditis brenneri]
Length = 569
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 13/200 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V RGLP+ T+ D+ FF I + + +NGR G+A V F AL++DR++
Sbjct: 7 VSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTEIL 178
+G RY+EVF S G D+ S PP RY+D+ + I+
Sbjct: 67 LGSRYIEVF---------PFDSAPRRRGDRDDYRPRSFPPR--DRYSDRAGPRGGLDPIV 115
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
++RGLPFSV +I FF I+ D I + + + GEAYV F S+E + A +
Sbjct: 116 RLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQQARPGGEAYVCFESMESMQIAKQRHM 175
Query: 239 MTIGSRYVELFPSTPDEARR 258
IG RY+E+F ++ E R
Sbjct: 176 KNIGHRYIEVFEASNRELTR 195
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQ 115
P+VRLRGLPF+ T DI FFA L IV D +L+ + R GEA+V F ++ A Q
Sbjct: 113 PIVRLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQQARPGGEAYVCFESMESMQIAKQ 172
Query: 116 RDRQNMGRRYVEVFRC 131
R +N+G RY+EVF
Sbjct: 173 RHMKNIGHRYIEVFEA 188
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 45 PYGYG-----GGFP---PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNG 94
PYG+G G P P V+R+RG+PF T+ D+ FF + V L+ +
Sbjct: 469 PYGHGRDRDYGNHPSVAPQSQHFVLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQ 528
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
R SG+A V+F + AL +D+Q MG RY+E+
Sbjct: 529 RPSGDARVIFFNRKDYDDALMKDKQYMGERYIEMI 563
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA-----CRPDGKATGEAYVEFVSVEEAK 231
+L+MRG+PF ++++ FF + I +++ + RP +G+A V F + ++
Sbjct: 492 VLRMRGVPFRATETDVYDFF--HPIRPNQVELIRDYQFQRP----SGDARVIFFNRKDYD 545
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ KDK +G RY+E+ P
Sbjct: 546 DALMKDKQYMGERYIEMIPDN 566
>gi|146197828|dbj|BAF57627.1| hnRNP F protein [Dugesia japonica]
Length = 344
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 31/200 (15%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVD----VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
RGLP++ T+ DI F GL I + ++ +N +GR SGEA V I + + +
Sbjct: 5 RGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLNDLRDYNGK 64
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
MG R++EVF ++D++ + ++ ++
Sbjct: 65 YMGTRFIEVFPATQKDWFGEEM---------------------------RMKLSDMTYVR 97
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+RGLP+ V K +I FF I D + + PD TGEA+V+F++ E+A A+ +
Sbjct: 98 LRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQ 157
Query: 240 TIGSRYVELFPSTPDEARRA 259
I SRY+E++ S+ E RA
Sbjct: 158 CIRSRYIEIYKSSLTEVYRA 177
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 109/251 (43%), Gaps = 59/251 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLP++ T DI FF+ L I LL + +GEAFV F ALQR
Sbjct: 96 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 155
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS--EVNYEGIYDNDFH--GSPPP------------- 160
Q + RY+E+++ + Y A+ E+N E I H + PP
Sbjct: 156 NQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRPANFPPKFNADPYSHVNSY 215
Query: 161 ------------------------SRAKRYNDKDQMEHTEI-------------LKMRGL 183
+R+ Y K+ ++ + MRGL
Sbjct: 216 YTDGYSFPQNKSSQGPMRRSRESKNRSNPYGGKNSHSSVKVETQNFGEFLGPLSIHMRGL 275
Query: 184 PFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGS 243
P++ + ++ +FF ++ E KI + PDGK TGEA +F S +A +AM KD+ +
Sbjct: 276 PYTATEKDVHEFFAPLRVAEVKIQLG--PDGKNTGEAEADFYSENDAVKAMEKDRCKMSW 333
Query: 244 RYVELFPSTPD 254
RY+ELF + D
Sbjct: 334 RYIELFRGSSD 344
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 24 RQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD 83
R+ NPY +S +S G F P S + +RGLP+ T+ D+ +FFA L
Sbjct: 236 RESKNRSNPYGGKNSHSSVKVETQNFGEFLGPLS---IHMRGLPYTATEKDVHEFFAPLR 292
Query: 84 IVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
+ +V + + +G+ +GEA F A+++DR M RY+E+FR
Sbjct: 293 VAEVKIQLGPDGKNTGEAEADFYSENDAVKAMEKDRCKMSWRYIELFR 340
>gi|341879523|gb|EGT35458.1| CBN-HRPF-1 protein [Caenorhabditis brenneri]
Length = 569
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 13/200 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V RGLP+ T+ D+ FF I + + +NGR G+A V F AL++DR++
Sbjct: 7 VSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDREH 66
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTEIL 178
+G RY+EVF S G D+ S PP RY+D+ + I+
Sbjct: 67 LGSRYIEVF---------PFDSAPRRRGDRDDYRPRSFPPR--DRYSDRAGPRGGLDPIV 115
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
++RGLPFSV +I FF I+ D I + + + GEAYV F S+E + A +
Sbjct: 116 RLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQRARPGGEAYVCFESMESMQIAKQRHM 175
Query: 239 MTIGSRYVELFPSTPDEARR 258
IG RY+E+F ++ E R
Sbjct: 176 KNIGHRYIEVFEASNRELTR 195
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQVEFALQ 115
P+VRLRGLPF+ T DI FFA L IV D +L+ + R GEA+V F ++ A Q
Sbjct: 113 PIVRLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQRARPGGEAYVCFESMESMQIAKQ 172
Query: 116 RDRQNMGRRYVEVFRC 131
R +N+G RY+EVF
Sbjct: 173 RHMKNIGHRYIEVFEA 188
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 45 PYGYG-----GGFP---PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNG 94
PYG+G G P P V+R+RG+PF T+ D+ FF + V L+ +
Sbjct: 469 PYGHGRDRDYGSHPSVAPQSQHFVLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQ 528
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
R SG+A V+F + AL +D+Q MG RY+E+
Sbjct: 529 RPSGDARVIFFNRKDYDDALMKDKQYMGERYIEMI 563
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA-----CRPDGKATGEAYVEFVSVEEAK 231
+L+MRG+PF ++++ FF + I +++ + RP +G+A V F + ++
Sbjct: 492 VLRMRGVPFRATETDVYDFF--HPIRPNQVELIRDYQFQRP----SGDARVIFFNRKDYD 545
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ KDK +G RY+E+ P
Sbjct: 546 DALMKDKQYMGERYIEMIPDN 566
>gi|312065923|ref|XP_003136024.1| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 383
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 26/196 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFF--AGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQR 116
+++ RGLP++CT+ D+ +FF A I + L +++GR SGE +VVF+ +FAL +
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-FHGSP--PPSRAKRYNDKDQME 173
D++ +G+RYVE+ + E +Y+ D D +G P P+ R
Sbjct: 67 DKKYIGKRYVEL--------QQVSSMESDYD---DGDRRYGGPVADPNLPGR-------- 107
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKR 232
T I+++ GLP+ K EIV+FF+ +I + I + R GK GEA+V F + A +
Sbjct: 108 ETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFTDEDSASK 167
Query: 233 AMCKDKMTIGSRYVEL 248
A+ K+K I RY L
Sbjct: 168 ALAKNKEYIQHRYCSL 183
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
PPP + +R+RGLP+ T+ DI FF L +DVL R SGEA V F +
Sbjct: 304 PPPEY-CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTDRPSGEAIVEFRNRADFD 362
Query: 112 FALQRDRQNMGRRYVEVF 129
A+QR+R MG RYVE+
Sbjct: 363 AAMQRNRNYMGSRYVELI 380
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+ + +I+ FF+ + + D + +GEA VEF + + AM ++
Sbjct: 310 IRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQRN 368
Query: 238 KMTIGSRYVELFP 250
+ +GSRYVEL P
Sbjct: 369 RNYMGSRYVELIP 381
>gi|384253335|gb|EIE26810.1| hypothetical protein COCSUDRAFT_46239 [Coccomyxa subellipsoidea
C-169]
Length = 877
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 33/226 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
V+R+RGLP+ T D+ FF G++I +GR GEA+V F + AL
Sbjct: 323 VLRMRGLPYGATAEDVVHFFEGIEIERGSAGIAFTCTPDGRPKGEAYVEFPSEDAQKEAL 382
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP---------------- 158
+R + +G RY+E+F + + AV Y G + S
Sbjct: 383 KRHKNEIGDRYIELFVSSKANMIQAVQQSNYYLGQSQHAMGPSLLPHPLPPLPLHGPLAS 442
Query: 159 --PPSRAKRYNDKDQMEHT-----EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211
P Y M+ L++RGLP+S EI FF + + D I + +
Sbjct: 443 FGAPYGHAPYGQGAPMQSVVSADGSTLRLRGLPYSAGIDEITSFFAGFSLASDGIQVVTK 502
Query: 212 PDGK----ATGEAYVEFVSVEEAKRAMC-KDKMTIGSRYVELFPST 252
PD + TG AYV F + EEA+RA + + +G+RY+E P T
Sbjct: 503 PDKEGNQLGTGVAYVRFGNPEEAERARKERHRAQMGARYIECLPFT 548
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNK-----NGRFSGEAFVVFAGPIQVEF 112
+RLRGLP++ +I FFAG + + +V K N +G A+V F P + E
Sbjct: 468 TLRLRGLPYSAGIDEITSFFAGFSLASDGIQVVTKPDKEGNQLGTGVAYVRFGNPEEAER 527
Query: 113 AL-QRDRQNMGRRYVEVFRCKRQDYYN 138
A +R R MG RY+E Y +
Sbjct: 528 ARKERHRAQMGARYIECLPFTASHYTS 554
>gi|410041428|ref|XP_003950996.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pan troglodytes]
Length = 442
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 29/203 (14%)
Query: 60 VVRLRGLPFNCTDIDI-----CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+++GL ++C+ ++ CK G + + GR SGEAFV + + A
Sbjct: 11 VVKVQGLSWSCSADEVMHFSDCKIQNGTSGI-CFIYTGEGRPSGEAFVELESADEAKLA- 68
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 69 XKDRETMGHRYVEVFK----------SNSVEMDWVSKHTGLNSPDTA-----NDG----- 108
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ +RGLPF K EIV FF +I+ + I + G++TGEA+V+ S E A+ A+
Sbjct: 109 --FVWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVQLASQEIAEMAL 166
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG RY+E+F ++ E
Sbjct: 167 KKHRERIGHRYIEIFXNSQAEVH 189
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + RGLP+ K+ F+ ++ ++HI D + TG A
Sbjct: 272 RYGDSGSSFQSTTGHCVHTRGLPYRATKNXY-NFYSPLNLM--RVHIEIGHDDRVTGRAD 328
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RY+E+F
Sbjct: 329 VEFAAHEDAVAAMAKDKANMQHRYMEIF 356
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG G + V RGLP+ T + F++ L+++ V + + + R +G A V F
Sbjct: 273 YGDSGSSFQSTTGHCVHTRGLPYRATK-NXYNFYSPLNLMRVHIEIGHDDRVTGRADVEF 331
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RY+E+F
Sbjct: 332 AAHEDAVAAMAKDKANMQHRYMEIF 356
>gi|308453513|ref|XP_003089469.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
gi|308240262|gb|EFO84214.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
Length = 264
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 17/200 (8%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
PP VRLRGLPFN T+ DI +FF+GL + V V GR +GEA+V F A
Sbjct: 69 PPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAYVEFKTQDDAGKA 128
Query: 114 LQRDRQNMGRRYVEV-FRCKRQDYYNAVA--SEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
++ DR+ M RY+E F +Q+ + + S + EG +F P P
Sbjct: 129 MENDRKEMSNRYIESEFLIGKQENNSNILVFSVTDVEG----EFEFRPDPD--------G 176
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR--PDGKATGEAYVEFVSVE 228
E ++++RG+P+S K+ +I QFF + + +I I P + +GEA+V F +
Sbjct: 177 NGEENHVVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQA 236
Query: 229 EAKRAMCKDKMTIGSRYVEL 248
A+ AM + +G+R+V L
Sbjct: 237 AAEAAMEYNNRHMGTRWVSL 256
>gi|351714130|gb|EHB17049.1| Epithelial splicing regulatory protein 2 [Heterocephalus glaber]
Length = 719
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 25/185 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 293 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 352
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 353 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 393
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 394 ILRLRGLPFSAGPADVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 453
Query: 234 MCKDK 238
+ + K
Sbjct: 454 LRRHK 458
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +E +++ RGLP+ ++ +FFK I + + G+ GEA + F
Sbjct: 283 SKADVVESETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFTD 342
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 343 REQRDLALQRHKHHMGVRYIEVYKATGEE 371
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 469 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 527
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C +D + ++ G+ SPPP +
Sbjct: 528 QRCHKKMMKERYVEVVSCSTEDMSRVLMGGTLSRSGM-------SPPPCK 570
>gi|431912397|gb|ELK14531.1| Epithelial splicing regulatory protein 2 [Pteropus alecto]
Length = 698
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 25/185 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 272 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 331
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 332 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 372
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 373 ILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 432
Query: 234 MCKDK 238
+ + K
Sbjct: 433 LRRHK 437
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D ++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 262 SKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 321
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 322 SEQRDLALQRHKHHMGVRYIEVYKATGEE 350
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 448 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAIAAA 506
Query: 115 QR-DRQNMGRRYVEVFRCKRQD 135
QR ++ M RYVEV C ++
Sbjct: 507 QRCHKKVMKERYVEVVPCSTEE 528
>gi|351707744|gb|EHB10663.1| G-rich sequence factor 1 [Heterocephalus glaber]
Length = 455
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 69/260 (26%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG------------------------------LDIVDVLL 89
VVRLRGLP++C++ DI FFAG L+IVD+
Sbjct: 193 VVRLRGLPYSCSEKDIVDFFAGAQQFDHIWGITSPMSSFLIVLLYLRSVPTGLNIVDITF 252
Query: 90 VN--KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS----- 142
V + R +GEA+V F P AL + R+ +G RY+E+F +R + V S
Sbjct: 253 VMDYRGRRKTGEAYVQFEEPEMASQALMKHREEIGNRYIEIFPSRRNEVRTHVGSHKGRK 312
Query: 143 --------------------EVNYE----GIYDNDFHGSPPPSRAKRY---NDKDQMEHT 175
EVN + ++N+ P ++ D M
Sbjct: 313 VVSSPTAKCITEPDVVFEEHEVNEDIRPMTTFENEKEIELPKEVLEKVPEAADLGAMPSL 372
Query: 176 EILKMRGLPFSVKKSEIVQ---FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
++ MRGLPF +I+ FF + + +I + GKATGEA+V F S E+A
Sbjct: 373 HVVHMRGLPFQANAQDIINVCAFFMPLRPV--RITMEYSSSGKATGEAHVHFGSHEDAVA 430
Query: 233 AMCKDKMTIGSRYVELFPST 252
AM KD+ + RY+ELF ++
Sbjct: 431 AMLKDRSHVHHRYIELFLNS 450
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 64/271 (23%)
Query: 29 EPNPYFAVSSSASGFQPYGYGGGFPPPPS--------FPVVRLRGLPFNCTDIDICKFFA 80
E +F + S A+ + + PS ++R +GLP++CT D+ FF
Sbjct: 54 EKENFFKIESKATYLEELTVLQEYELAPSKLGEEVDDVFLIRAQGLPWSCTVEDVLNFFQ 113
Query: 81 GLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
I + L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D
Sbjct: 114 DCKIRNSEKGIHFLLNRDGKRRGDALIEMESERDVQKALEKHRLYMGQRYVEVYEINNED 173
Query: 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 195
+A+ + + SP ND ++++RGLP+S + +IV F
Sbjct: 174 V-DALMKSLQVKA--------SP------LVNDG-------VVRLRGLPYSCSEKDIVDF 211
Query: 196 FKDYKIIED--------------KIHIACRPDG---------------KATGEAYVEFVS 226
F + + +++ P G + TGEAYV+F
Sbjct: 212 FAGAQQFDHIWGITSPMSSFLIVLLYLRSVPTGLNIVDITFVMDYRGRRKTGEAYVQFEE 271
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 272 PEMASQALMKHREEIGNRYIEIFPSRRNEVR 302
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 56 PSFPVVRLRGLPF--NCTDI-DICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVE 111
PS VV +RGLPF N DI ++C FF L V + + + +G+ +GEA V F
Sbjct: 370 PSLHVVHMRGLPFQANAQDIINVCAFFMPLRPVRITMEYSSSGKATGEAHVHFGSHEDAV 429
Query: 112 FALQRDRQNMGRRYVEVF 129
A+ +DR ++ RY+E+F
Sbjct: 430 AAMLKDRSHVHHRYIELF 447
>gi|393910110|gb|EJD75743.1| RNA recognition domain-containing protein [Loa loa]
Length = 674
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 50/233 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLP++ T DI +FF+GL++ D ++ + GR SGEAFV A E AL+R +
Sbjct: 124 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 183
Query: 119 QNMGRRYVEVFRCKRQD----YYNA------VASEVNYEGIYDN-DF-----------HG 156
MG RYVEVFR + YY A + V GI DF +G
Sbjct: 184 NYMGSRYVEVFRSSADEMDNSYYAARGIPPPTSGPVPLRGISPTLDFRFRDRYADYGRYG 243
Query: 157 SP---------PPSRAKRYNDKDQ----------------MEHTEILKMRGLPFSVKKSE 191
P P + Y D+D+ + T + MRGLP+SV +
Sbjct: 244 GPIRLSSLHPRPSPYDRPYYDRDRYYRCGARYDPEFDEAMYDPTVKVFMRGLPYSVTTLD 303
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
I +FF+ +E I + + + +G+A V F ++ EA+ A+ ++K +G+R
Sbjct: 304 IEEFFRPLNCVE--IKLGYNEERRLSGDALVSFSTMAEAREALSRNKNNMGTR 354
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIV----------------DVLLVNKNGRFSGE 99
P +RLRGLPF + D+ F + I + NGR SGE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 100 AFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP 159
+V V+ A + DR + RY+EVF + + HG
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIR-------------HGVIK 109
Query: 160 PSRAKRYNDKDQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
S D D + ++++RGLP+S +I +FF ++ + I P G+ +G
Sbjct: 110 GSGG----DADSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVID--KEPGGRPSG 163
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
EA+V + E A+ A+ + K +GSRYVE+F S+ DE
Sbjct: 164 EAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADE 200
>gi|334312966|ref|XP_003339804.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Monodelphis domestica]
Length = 1253
Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
VVR RGLP+ +D DI +FF GL+I N GR +GEA V F Q + +L+
Sbjct: 779 VVRARGLPWQSSDQDIARFFKGLNIAKGGRGPCAXNAQGRRTGEALVRFVDSEQRDLSLE 838
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
R + +MG RY+EV++ +++ +A ++E A+ + +DQ+
Sbjct: 839 RHKHHMGARYIEVYKASGEEFLK-IAGGTSHE--------------VAQFLSREDQV--- 880
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKR 232
I++MRGLPF+ +++ F + + + PDG+ TG+A+ F E A+
Sbjct: 881 -IIRMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRPTGDAFALFACEELAQG 939
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESR 262
A+ K K +G RY+EL + P + +R
Sbjct: 940 ALRKHKGILGKRYIELSGAPPSGVSQVLNR 969
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 20/209 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V +L V+ +GR +G+AF +FA + A
Sbjct: 881 IIRMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRPTGDAFALFACEELAQGA 940
Query: 114 LQRDRQNMGRRYVEVFRCKRQ---DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ + +G+RY+E+ N S + P P +D
Sbjct: 941 LRKHKGILGKRYIELSGAPPSGVSQVLNRYMSSPLIPTLPAPLIPVLPAPFPLAGAGVRD 1000
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S +
Sbjct: 1001 ------CVRLRGLPYTASIDDILGFLGEAAGDIRPHGVHMVLNQQGRPSGDAFIQMKSAD 1054
Query: 229 EAKRAM--CKDKMTIGSRYVELFPSTPDE 255
A A C KM + RYVE+FP + +E
Sbjct: 1055 RALVAAQRCHKKM-MKERYVEVFPCSGEE 1082
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRPDGKATGEAYVEFVSVEEA 230
+++ +++ RGLP+ +I +FFK I + + A G+ TGEA V FV E+
Sbjct: 774 VDNETVVRARGLPWQSSDQDIARFFKGLNIAKGGRGPCAXNAQGRRTGEALVRFVDSEQR 833
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDE 255
++ + K +G+RY+E++ ++ +E
Sbjct: 834 DLSLERHKHHMGARYIEVYKASGEE 858
Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 55 PPSFPV--------VRLRGLPFNCTDIDICKFF--AGLDIVDV---LLVNKNGRFSGEAF 101
P FP+ VRLRGLP+ + DI F A DI +++N+ GR SG+AF
Sbjct: 988 PAPFPLAGAGVRDCVRLRGLPYTASIDDILGFLGEAAGDIRPHGVHMVLNQQGRPSGDAF 1047
Query: 102 VVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ + A QR ++ M RYVEVF C ++
Sbjct: 1048 IQMKSADRALVAAQRCHKKMMKERYVEVFPCSGEE 1082
>gi|344240722|gb|EGV96825.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 241
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+L GL ++ + D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 11 VVKLCGLLWSGSIEDVQNFLSNCTIHDGVSGVHFIYTSEGRQSGEAFVELQSENDVKLAL 70
Query: 115 QR--DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
++ DR++MG RY+EVF+ R + + + G +RA ND
Sbjct: 71 KKKKDRESMGHRYIEVFKSHR----TKMDWVLKHSG-----------SNRANSANDG--- 112
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+++ GLPF K EIVQFF +I+ + I + P+GK TGEA+++ S E A++
Sbjct: 113 ----FVRLPGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFIQIASQELAEK 168
Query: 233 AMCKDKMTIG 242
A+ K K IG
Sbjct: 169 ALGKHKERIG 178
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRL GLPF CT +I +FF+GL+IV L V+ G+ +GEAF+ A E AL +
Sbjct: 114 VRLPGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFIQIASQELAEKALGKH 173
Query: 118 RQNMGR 123
++ +G+
Sbjct: 174 KERIGQ 179
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+ GL +S ++ F + I + +H +G+ +GEA+VE S + K A+
Sbjct: 11 VVKLCGLLWSGSIEDVQNFLSNCTIHDGVSGVHFIYTSEGRQSGEAFVELQSENDVKLAL 70
Query: 235 CK--DKMTIGSRYVELFPS 251
K D+ ++G RY+E+F S
Sbjct: 71 KKKKDRESMGHRYIEVFKS 89
>gi|194744433|ref|XP_001954699.1| GF16612 [Drosophila ananassae]
gi|190627736|gb|EDV43260.1| GF16612 [Drosophila ananassae]
Length = 600
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 36/210 (17%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPIQ 109
P F +RLRGLP++ T +I F +++ + + LV +G+ +GEA+V +
Sbjct: 51 PKF--IRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVSTQED 108
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
VE A + ++ +MG RY+EVF ++ A+ + +
Sbjct: 109 VEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGNAF------------------- 149
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSV 227
++K+RGLP++V + +I +FF +I D+ I D G+ATGEA+V+F S
Sbjct: 150 -------VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFESQ 202
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
++ ++A+ +++ IG RY+E+F S+ E +
Sbjct: 203 DDTEQALGRNREKIGHRYIEIFRSSIAEMK 232
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE + E+
Sbjct: 49 ESPKFIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVSTQED 108
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 109 VEEARKLNKASMGHRYIEVFTATPKEAKEA 138
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 12/90 (13%)
Query: 47 GYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAF 101
G+G F VV+LRGLP+ T+ I +FF+GL+I + ++++ GR +GEAF
Sbjct: 144 GHGNAF-------VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAF 196
Query: 102 VVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
V F E AL R+R+ +G RY+E+FR
Sbjct: 197 VQFESQDDTEQALGRNREKIGHRYIEIFRS 226
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ +RGLP+ + D+ KFF + +V + NK G SG A F + A++R R
Sbjct: 487 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQMAMKRHR 546
Query: 119 QNMGRRYVEVF 129
+ MG RY+E+F
Sbjct: 547 EQMGSRYIELF 557
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ +EH I MRGLP++ ++++ +FF+ I + I G +G A F + E
Sbjct: 480 NNDIEHYTI-HMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTYE 536
Query: 229 EAKRAMCKDKMTIGSRYVELF 249
+++ AM + + +GSRY+ELF
Sbjct: 537 DSQMAMKRHREQMGSRYIELF 557
>gi|170586440|ref|XP_001897987.1| RNA recognition motif. [Brugia malayi]
gi|158594382|gb|EDP32966.1| RNA recognition motif [Brugia malayi]
Length = 573
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 110/233 (47%), Gaps = 50/233 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLP++ T DI +FF+GL++ D ++ + GR SGEAFV A E AL+R +
Sbjct: 109 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 168
Query: 119 QNMGRRYVEVFRCKRQD----YYNA------VASEVNYEGIYDN-DFH------------ 155
MG RYVEVFR + YY A + V GI DF
Sbjct: 169 NYMGSRYVEVFRSSADEMDNSYYAARGIPPPTSGPVPLRGISPTLDFRFRDRYADYGRYG 228
Query: 156 -------GSPPPS--------------RAKRYN---DKDQMEHTEILKMRGLPFSVKKSE 191
P PS RY+ D+ + T + MRGLP+SV +
Sbjct: 229 GPIRLSSLHPRPSPYDRPYYDRDRYYRYGARYDPEFDEAMYDPTVKVFMRGLPYSVTTLD 288
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
I +FF+ +E I + + + +G+A V F ++ EA+ A+ ++K +G+R
Sbjct: 289 IEEFFRPLNCVE--IKLGYNEERRLSGDALVTFSTMAEAREALSRNKNNMGTR 339
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 19/201 (9%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
P +RLRGLPF + D FF GL+ + + NGR SGE +V V+ A
Sbjct: 3 PDTNYIRLRGLPFAAKEQDFF-FFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKEAQ 61
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR + RY+EVF + + G+ + G A +
Sbjct: 62 KLDRNEINGRYIEVFSVSDAELLMMIR-----HGVIKSSGGGDADSRYASNF-------- 108
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S +I +FF ++ + I P G+ +GEA+V + E A+ A+
Sbjct: 109 --VVRLRGLPYSATIDDIKEFFSGLEVADAVID--KEPGGRPSGEAFVRLATKEYAELAL 164
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
+ K +GSRYVE+F S+ DE
Sbjct: 165 ERSKNYMGSRYVEVFRSSADE 185
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 59 PVVR--LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
P V+ +RGLP++ T +DI +FF L+ V++ L N+ R SG+A V F+ + AL
Sbjct: 271 PTVKVFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVTFSTMAEAREALS 330
Query: 116 RDRQNMGRR 124
R++ NMG R
Sbjct: 331 RNKNNMGTR 339
>gi|159486121|ref|XP_001701092.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158271986|gb|EDO97794.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 295
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 39 SASGFQPYGYGG--GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRF 96
+ G P GG G P FP VRLRGLPF+ + DI K F L+ VD+++V ++GRF
Sbjct: 6 TEEGLDPGMAGGVQGQIGPDGFPCVRLRGLPFDVMEGDI-KMFLELEPVDIVMVKRDGRF 64
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS 142
SGEAFVV QVE A+ + RQ +G+R++E+F +++DYY AVA+
Sbjct: 65 SGEAFVVVGNLQQVEAAMTKHRQFIGQRFIEIFPAQKRDYYRAVAN 110
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDY-----KIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
T LK+RGLPF+ +I+ FF D ++ ++H+ G+ TG A V+F + E
Sbjct: 197 TTWLKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTD-GGRPTGMALVQFNTPAE 255
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A KDK +G+RYVE+FP+T + + +R+
Sbjct: 256 VSMARAKDKQLMGTRYVEIFPATRGDLDKFMART 289
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAG-------LDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFA 113
++LRGLPF DI FF LD V + GR +G A V F P +V A
Sbjct: 200 LKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPAEVSMA 259
Query: 114 LQRDRQNMGRRYVEVFRCKRQDY 136
+D+Q MG RYVE+F R D
Sbjct: 260 RAKDKQLMGTRYVEIFPATRGDL 282
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF V + +I F + +E + + DG+ +GEA+V ++++ + AM K
Sbjct: 30 VRLRGLPFDVMEGDIKMFLE----LEPVDIVMVKRDGRFSGEAFVVVGNLQQVEAAMTKH 85
Query: 238 KMTIGSRYVELFPSTPDEARRA 259
+ IG R++E+FP+ + RA
Sbjct: 86 RQFIGQRFIEIFPAQKRDYYRA 107
>gi|322778928|gb|EFZ09344.1| hypothetical protein SINV_16613 [Solenopsis invicta]
Length = 565
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 25/182 (13%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L ++ GR +GEA V F + AL+R + +MG RY+EV++ +D+ V
Sbjct: 9 LCLSPMGRRNGEALVRFINKEHRDMALKRHKHHMGTRYIEVYKASGEDF-------VGVA 61
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF----KDYKII- 202
G + H SR + I++MRGLP+ ++++FF K +++
Sbjct: 62 GGTSGEAHAFL--SRGAQV----------IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLD 109
Query: 203 -EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAES 261
ED + +PDG+ATG+A+V F E+A +A+ K + IGSRY+ELF ST E ++ +
Sbjct: 110 GEDGVLFVKKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTAEVQQVLN 169
Query: 262 RS 263
R+
Sbjct: 170 RA 171
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP++C + +FF LD D VL V K +GR +G+AFV+FA
Sbjct: 79 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 138
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
AL + R +G RY+E+FR + + + + + + P ++
Sbjct: 139 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRATDPKQMILPPPPIAQLPPLLPQHIITS 198
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ +++RGLP+ I++F ++ I+ +H+ G+ +GEA+++ S
Sbjct: 199 GTR-KDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQMDS-- 255
Query: 229 EAKRAMCKDK-----MTIG--SRYVELFPSTPDE 255
EA C + M G RY+E+F + D+
Sbjct: 256 EASAYACASQRHHRYMIYGKKQRYIEVFQCSGDD 289
>gi|118090272|ref|XP_420600.2| PREDICTED: G-rich sequence factor 1 [Gallus gallus]
Length = 410
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 98/214 (45%), Gaps = 28/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VV LRGLPF+ T+ DI FFAGL I D+ V + R +GEA+V FA P V AL R ++
Sbjct: 190 VVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAPEMVAKALLRHKE 249
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--- 176
M RY+EV+ +++ ++ + E I GS R Y E +
Sbjct: 250 YMENRYIEVYISTKREMQRHLS--LRKEMIRLRRELGSTAEERELDYTRGSSAEREKEVA 307
Query: 177 ---------------------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
+ +RG P V +IV FF K +I I DG
Sbjct: 308 SEAAESSGLSSQSGSILSSLRTVHVRGFPPQVSAQDIVDFFAPLKPT--RILIEYNSDGV 365
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
ATGEA V F S ++A AM K++ + VE+F
Sbjct: 366 ATGEADVHFESYDDAVAAMAKERAQLQFGTVEVF 399
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 37/217 (17%)
Query: 53 PPPP------SFPVVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAF 101
P PP S ++R G PF CT ++ FF I + L+N++GR G+A
Sbjct: 78 PEPPKEENEDSVFLIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDAL 137
Query: 102 VVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS 161
+ V+ AL+++ + MG RYV+V I+D D G
Sbjct: 138 IELESKADVQKALEKNLRYMGTRYVKVHE------------------IHDKDVDGL---L 176
Query: 162 RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
++ RY + ++ ++ +RGLPF + +I FF +I + + R + K TGEAY
Sbjct: 177 QSLRY--ESEVMSDGVVLLRGLPFDSTEDDIADFFAGLRITD--MTFVYRGERK-TGEAY 231
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
V+F + E +A+ + K + +RY+E++ ST E +R
Sbjct: 232 VQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQR 268
>gi|390363422|ref|XP_003730367.1| PREDICTED: uncharacterized protein LOC100888204 [Strongylocentrotus
purpuratus]
Length = 1832
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 23/219 (10%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLVNKN--GRFSGEAFVVFAGPIQVEFAL 114
F VRL GLPF+CTD + F ++I D + ++++ GR +G A + GP ++ AL
Sbjct: 582 FYAVRLTGLPFDCTDRGVRLFLRDINIAPDGVQIHRDHRGRITGTANIKLQGPSDIDQAL 641
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYN--AVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
+R +Q MG+RY++V C + ++ V+S + + G P R
Sbjct: 642 KRHQQYMGKRYIDVRPCLQSEWEKEKQVSSAEPSKRRSRSPVRGRNSPLR---------- 691
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
++MRGL K S+IV FF+ + +D I++ DG +G AY+EF+ + A+R
Sbjct: 692 NCNTCIEMRGLASFTKNSDIVDFFEGLAMRQDSIYLDPNKDGSGSGIAYLEFIDPDMARR 751
Query: 233 AMCKDKMTIGSRYVE--------LFPSTPDEARRAESRS 263
A K+ R V + D RRAE RS
Sbjct: 752 ACQKNGRQFNRRTVSIRIISKEIMDAKITDMKRRAERRS 790
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
IL+++GLP++ +I Q F+ I + +HI G G+ ++ F S E+A++AM +
Sbjct: 3 ILRLQGLPWTATAKDIRQHFEGLSIPDGGVHII----GGEEGDVFIAFGSDEDARKAMQR 58
Query: 237 DKMTIGSRYVELFPSTPDEARR--AESRS 263
K + + L S+ E + AESR+
Sbjct: 59 QKQPLNGGRIMLLLSSKSEMQEVIAESRA 87
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+R +P+S + +I FF +I+ IHI +GK TG ++EF A+
Sbjct: 1496 IRNVPYSARWPDIAHFFSGLQIVPGGIHIMVNSEGKPTGHCFIEFADAHNAR 1547
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++RL+GLP+ T DI + F GL I D V ++ G G+ F+ F A+QR
Sbjct: 3 ILRLQGLPWTATAKDIRQHFEGLSIPDGGVHII---GGEEGDVFIAFGSDEDARKAMQRQ 59
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVA 141
+Q + + + + + +A
Sbjct: 60 KQPLNGGRIMLLLSSKSEMQEVIA 83
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+R +P++ DI FF+GL IV ++VN G+ +G F+ FA +R
Sbjct: 1494 AHIRNVPYSARWPDIAHFFSGLQIVPGGIHIMVNSEGKPTGHCFIEFADAHNARLTEERR 1553
Query: 118 RQNMGRRYVEVFRCKR 133
M R +++ C +
Sbjct: 1554 LHPMRDRPLQINACSK 1569
>gi|170047639|ref|XP_001851321.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870002|gb|EDS33385.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 677
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNY 146
L ++ GR +GEA V F + AL+R + ++ RY+EV+R +D+ AVA +
Sbjct: 76 ALCLSPQGRRNGEALVRFVSQEHRDMALKRHKHHISNRYIEVYRASGEDFL-AVAGGASN 134
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---- 202
E A+ + K I++MRGLP+ ++++FF + +
Sbjct: 135 E---------------AQAFLSKGAQV---IIRMRGLPYDCTAKQVLEFFANGETSCTVL 176
Query: 203 --EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
D I +PDG+ATG+A+V F +A +A+ K + +IG RY+ELF ST E ++
Sbjct: 177 DGADGILFVKKPDGRATGDAFVLFAQESDASKALSKHRESIGQRYIELFRSTTAEVQQVL 236
Query: 261 SRS 263
+RS
Sbjct: 237 NRS 239
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG-------LDIVD-VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT + +FFA LD D +L V K +GR +G+AFV+FA
Sbjct: 147 IIRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQESDA 206
Query: 111 EFALQRDRQNMGRRYVEVFRCKR---QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN 167
AL + R+++G+RY+E+FR Q N YE + PP +
Sbjct: 207 SKALSKHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYEPP-QPPLIAALPPVQMPLLP 265
Query: 168 DKDQMEHTE--ILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVE 223
TE +++RGLP+ K I+ F +D+ I+ +H+ G+ GEA+++
Sbjct: 266 QHVITSGTEKNCIRLRGLPYEAKVEHILHFLEDFAKHIVYQGVHLVYNAQGQFNGEAFIQ 325
Query: 224 F---VSVEEAKRAMCKDKMTIG--SRYVELFPSTPDE 255
V+ ++ + M G RY+E+F + D+
Sbjct: 326 MDSEVAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGDD 362
>gi|221507828|gb|EEE33415.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 510
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 17/211 (8%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFF---AGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVE 111
PSF VVRLRGLP++ + ++ FF L+ +VL+ + + R +GEA+V P E
Sbjct: 50 PSF-VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLRE 108
Query: 112 FALQRDR-QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
A++ + +G R++EVFR +++ A + D
Sbjct: 109 QAIKDLHGRLLGTRWIEVFRASEEEFQKADDRRKTVMAAISGNTDSL----------DAS 158
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ + ++K+RGLP+S ++EIV+FFK + I D + + DG+ +G A+VE S + A
Sbjct: 159 RRMNLNVVKLRGLPWSCSENEIVRFFKGFDIHSDDVVLGVTGDGRLSGIAFVELPSPDVA 218
Query: 231 KRAM-CKDKMTIGSRYVELFPSTPDEARRAE 260
++A K +G R++E++P+T ++ +RA+
Sbjct: 219 EKAREVLHKKYMGRRFIEVYPATREDMQRAK 249
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYK---IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++L++RGLP+S + IVQFF + I+ I I DG+ +GEAYV+FV EA
Sbjct: 410 AQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI----DGRPSGEAYVQFVDAAEAL 465
Query: 232 RA-MCKDKMTIGSRYVELFPSTPDE 255
RA K+ + R +ELFPS+ E
Sbjct: 466 RAFQAKNGGRMDKRMIELFPSSKQE 490
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++++RGLP+ V++ ++ FFK +E D + I D + TGEAYV+ ++A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 236 KDKM--TIGSRYVELFPSTPDEARRAESRSR 264
KD +G+R++E+F ++ +E ++A+ R +
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDRRK 142
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL--LVNKNGRFSGEAFVVFAGPIQVEFAL 114
S V+RLRGLP++ + I +FF G + +L + +GR SGEA+V F + A
Sbjct: 409 SAQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEALRAF 468
Query: 115 Q-RDRQNMGRRYVEVFRCKRQD 135
Q ++ M +R +E+F +Q+
Sbjct: 469 QAKNGGRMDKRMIELFPSSKQE 490
>gi|326918872|ref|XP_003205709.1| PREDICTED: g-rich sequence factor 1-like, partial [Meleagris
gallopavo]
Length = 343
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 98/214 (45%), Gaps = 28/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VV LRGLPF+ T+ DI FFAGL I D+ V + R +GEA+V FA P V AL R ++
Sbjct: 123 VVLLRGLPFDSTEDDIADFFAGLRITDITFVYRGERKTGEAYVQFAAPEMVAKALLRHKE 182
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--- 176
M RY+EV+ +++ ++ + E I GS R Y E +
Sbjct: 183 YMENRYIEVYISTKREMQRHLS--LRKEMIRLRRELGSTAEERESDYTRGSSAEREKEVA 240
Query: 177 ---------------------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
+ +RG P V +I+ FF + +I I DG
Sbjct: 241 SEAAESSGPSSQTGSILSSLRAVHVRGFPTQVSAQDIIDFFAPLR--PRRILIEYNSDGV 298
Query: 216 ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
ATGEA V F S ++A AM K++ + VE+F
Sbjct: 299 ATGEADVHFESYDDAVTAMAKERAQLQFGAVEVF 332
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 31/204 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R G PF CT ++ FF I + L+N++GR G+A + V+ AL
Sbjct: 24 LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIELESKADVQKAL 83
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+++ + MG RYV+V I+D D G ++ RY + Q+
Sbjct: 84 EKNLRYMGTRYVKVHE------------------IHDKDVDGLL---QSLRY--ESQVMS 120
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ +RGLPF + +I FF +I + I R + K TGEAYV+F + E +A+
Sbjct: 121 DGVVLLRGLPFDSTEDDIADFFAGLRITD--ITFVYRGERK-TGEAYVQFAAPEMVAKAL 177
Query: 235 CKDKMTIGSRYVELFPSTPDEARR 258
+ K + +RY+E++ ST E +R
Sbjct: 178 LRHKEYMENRYIEVYISTKREMQR 201
>gi|241999526|ref|XP_002434406.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497736|gb|EEC07230.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 1026
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 27/206 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VV ++GLP++C++ D+ +FF+GL+I+D+ + + NGR +G FV FA + A+ R
Sbjct: 634 VVVMKGLPYSCSETDVLQFFSGLNILDLFVEHDHNGRATGTGFVEFASKRDFDAAMNMHR 693
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI- 177
+ MG RY+E+ R + A N +G+ + P+ R +++ H+ I
Sbjct: 694 RKMGHRYIELTVGTRDSMHLA----RNADGVRPDG------PAVPPRTREEEAPHHSPIP 743
Query: 178 ---------------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
+ M GLP +V +I FF +I IHI +G TG A+
Sbjct: 744 PAPLGHGSVPLAHTCVSMLGLPDTVTDRDIADFFSTQGVIPRAIHIMLGANGVPTGHAFA 803
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVEL 248
EF + + +RA K+ ++G + L
Sbjct: 804 EFAAHADCERAFLKNGASLGPHTITL 829
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ ++ M+GLP+S +++++QFF I++ + + +G+ATG +VEF S +
Sbjct: 630 DDNTVVVMKGLPYSCSETDVLQFFSGLNILD--LFVEHDHNGRATGTGFVEFASKRDFDA 687
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAES 261
AM + +G RY+EL T D A +
Sbjct: 688 AMNMHRRKMGHRYIELTVGTRDSMHLARN 716
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++M+ LP++ +I ++F+ I E +HI G G+A++ F + E+A++AM +
Sbjct: 4 IIRMQNLPWAANSLDIRRYFQGLGIPEGGVHIV----GGDKGDAFIAFSTDEDARQAMER 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
D I ++L S+ E +R ++R
Sbjct: 60 DAGKIKEVRIKLLLSSRAEMQRVIDQAR 87
>gi|395754533|ref|XP_003779794.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Pongo abelii]
Length = 440
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 59/241 (24%)
Query: 66 LPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
LPF C+ +I +FF+ L+IV L+V+ GR +GEAFV +A E L++ ++ +
Sbjct: 113 LPFECSKEEIVQFFSWLEIVPNGITLMVDFQGRSTGEAFVQYASQEIAENVLEKHKERIR 172
Query: 123 RRYVEVFRCKRQDY-----------------------YNAVASEVNYE----GIYD---- 151
Y+++F+ R + +N+++ +E G Y
Sbjct: 173 HMYIKIFKSSRAEVRTXKKLMATQQPGPYDRPGAGKGHNSISRGDGFERMRCGAYGGSYG 232
Query: 152 --NDFHG------------------SPPPSRAKRYNDKD---QMEHTEILKMRGLPFSVK 188
ND++G S RY D Q + M GLP+
Sbjct: 233 DYNDYNGYNDGYECGSDRFGRNFNYSFLGMSDHRYEDGGSTFQSTMGHCVHMCGLPYRAT 292
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+++I FF + ++HI PDG+ TGEA VEFV+ E+A AM KDK RYVEL
Sbjct: 293 ENDIYNFFXTAQSW--RVHIVIGPDGRVTGEANVEFVTXEDAVAAMSKDKANTHHRYVEL 350
Query: 249 F 249
F
Sbjct: 351 F 351
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 32/203 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+++++ P +C + FF+ I + + ++ GR SGE F +V+ A
Sbjct: 12 IMKVQRXPXSCPANKVQGFFSECKIXNKAQRIHFIYSREGRPSGETFAELE-SXEVKSAR 70
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++D++ +G RYV VF+ ++ V +G+ H P D M +
Sbjct: 71 KKDKETIGHRYVSVFK----------SNNVEMDGVLK---HSGP---------DSSVMAN 108
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ LPF K EIVQFF +I+ + I + G++TGEA+V++ S E A+ +
Sbjct: 109 DGFV----LPFECSKEEIVQFFSWLEIVPNGITLMVDFQGRSTGEAFVQYASQEIAENVL 164
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K I Y+++F S+ E R
Sbjct: 165 EKHKERIRHMYIKIFKSSRAEVR 187
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 3 GSRGAILGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVR 62
GS G G +DGYE GS R + +S Y GG V
Sbjct: 229 GSYGDYNDYNGYNDGYECGSDRFGRNFNYSFLGMSD-----HRYEDGGSTFQSTMGHCVH 283
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+ GLP+ T+ DI FF V +++ +GR +GEA V F A+ +D+ N
Sbjct: 284 MCGLPYRATENDIYNFFXTAQSWRVHIVIGPDGRVTGEANVEFVTXEDAVAAMSKDKANT 343
Query: 122 GRRYVEVF 129
RYVE+F
Sbjct: 344 HHRYVELF 351
>gi|268529124|ref|XP_002629688.1| C. briggsae CBR-SYM-2 protein [Caenorhabditis briggsae]
Length = 613
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+RGLP++CTD I FF L + + +L +GR +G AFV F + L +
Sbjct: 273 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGCAFVQFETEEDAQQGLLKH 332
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ +G+RY+E+F+ + A+EV N + +P + A +D+ + +
Sbjct: 333 RQVIGQRYIELFK--------STAAEVQQVVKRCNLINSAPVVANAVEVSDEKK---KDC 381
Query: 178 LKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+++RGLP+ IV F D+ + +H+ G +GEA+++ +S E+A A
Sbjct: 382 VRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMIS-EQAAAATA 440
Query: 236 ----KDKMTIG--SRYVELFPSTPDE 255
+ M +G RY+E+F S+ +E
Sbjct: 441 SGVHNNFMCVGKKKRYIEVFQSSAEE 466
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLP+ ++I FF+ K+ E KI R DG+ TG A+V+F + E+A++ + K
Sbjct: 273 IVRMRGLPYDCTDTQIRAFFEPLKLTE-KILFITRTDGRPTGCAFVQFETEEDAQQGLLK 331
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ IG RY+ELF ST E ++ R
Sbjct: 332 HRQVIGQRYIELFKSTAAEVQQVVKR 357
>gi|432909266|ref|XP_004078148.1| PREDICTED: RNA-binding protein 12B-like [Oryzias latipes]
Length = 631
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 16/205 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VV L GLPF+ T+ IC+FF GL+ + VLL N G+ +G+AFV F AL+++
Sbjct: 133 VVFLNGLPFSVTENQICEFFKGLETNEIVLLKNHRGQNNGKAFVRFVTREDAMEALKKNM 192
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK-------------R 165
+ +G RYVEV ++Y A + DN G P R + R
Sbjct: 193 EYIGTRYVEVCTTTINEWYRATGRMPMGLNVDDNFERGRMPDHRQRISPHTRSRSPMMQR 252
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ + E+ +L L + ++K +I Q F+ K+ D+I P GK T A+V F
Sbjct: 253 HAPASEEEYCVLLD--NLSYGMEKEDIKQMFRGVKLDNDQILHLTDPAGKRTRSAFVLFK 310
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFP 250
S + RA+ +K + +R+V + P
Sbjct: 311 SFHDYNRAISNEKKLLYNRWVNIRP 335
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL+GL DI KFF GL I D V ++ G EAF++FA A+ R
Sbjct: 4 VIRLQGLKVTAGSEDIRKFFTGLKIPDGGVHII---GGDHEEAFIIFASDEDARRAMTRS 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG-SPPPSRAKRYNDKDQMEH-- 174
+ V + + + N + + G S P +R + + + H
Sbjct: 61 GGQIKGSPVTLLLSSKTEMQNVLERTTQIVELDQKKQVGRSVDPKVDRRSSGRTETTHPI 120
Query: 175 -------TE---ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
TE ++ + GLPFSV +++I +FFK + ++I + G+ G+A+V F
Sbjct: 121 YVKRDMDTERYFVVFLNGLPFSVTENQICEFFKGLET--NEIVLLKNHRGQNNGKAFVRF 178
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
V+ E+A A+ K+ IG+RYVE+ +T +E RA R
Sbjct: 179 VTREDAMEALKKNMEYIGTRYVEVCTTTINEWYRATGR 216
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAG--LDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L L + DI + F G LD +L L + G+ + AFV+F A+ +
Sbjct: 263 VLLDNLSYGMEKEDIKQMFRGVKLDNDQILHLTDPAGKRTRSAFVLFKSFHDYNRAISNE 322
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-FHGSPPPSRAKRYNDKDQMEHTE 176
++ + R+V + R++ + S+ G +N+ + PPS + + ++
Sbjct: 323 KKLLYNRWVNIRPISRENMLALLQSQNTAIGPPENNQSYQERPPSHPRDPYESEKA---- 378
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ ++ LPF V+K EI+ FF + + E ++ + G G+A V F S EA +C
Sbjct: 379 CVYVKNLPFDVRKVEIMDFFHGFNVSESRVSVLQDHKGAGVGQALVLFGSEAEAMEVLCL 438
Query: 237 D-KMTIGSRYV 246
+ + +GS +
Sbjct: 439 NGRRLLGSEVI 449
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GL + +I +FF KI + +HI G EA++ F S E+A+RAM +
Sbjct: 4 VIRLQGLKVTAGSEDIRKFFTGLKIPDGGVHII----GGDHEEAFIIFASDEDARRAMTR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I V L S+ E + R+ Q
Sbjct: 60 SGGQIKGSPVTLLLSSKTEMQNVLERTTQ 88
>gi|427788565|gb|JAA59734.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1011
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VV ++GLP+N ++ D+ +FF+GL+++D+L+ +++GR +G AFV F E A+ R
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQR 586
Query: 119 QNMGRRYVEVFRCKRQDYYNA-VASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ +G RY+E+ R Y A + +G+ PP + + H +
Sbjct: 587 RKIGHRYIELSVGSRDAMYAARNGDNIRPDGMPVGRRDEEPPVGHGVGPDRGPDVGHGPM 646
Query: 178 -------------------------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
+ M GLP +V +I FF +I IHI
Sbjct: 647 HGPGMGPAAPAHGAGHVLVPPGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGA 706
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+G TG A+ EF + + +RA +D +G + L
Sbjct: 707 NGVPTGHAFAEFATHADCERAFLQDGANLGPHVIAL 742
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVV-FAGPIQVEFALQRDRQ 119
V LRGL T D+ F GL I + ++ VV FA A+Q D +
Sbjct: 426 VELRGLSGAPTPRDVKDLFRGLRIFSGCIRVATSESGMKSVVVRFANKWDAREAIQGDYK 485
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ ++V +D + V+ P R D D ++
Sbjct: 486 VLCGDPIQVVPFP-EDLFEQTELLVSPSAA----------PPNQGRTRDSDM-----VVV 529
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
M+GLP++ + +++QFF +++ I + G+ATG A+VEF + + AM +
Sbjct: 530 MKGLPYNTSEQDVLQFFSGLNVLD--ILVEHDRSGRATGMAFVEFGDKRDFETAMSMQRR 587
Query: 240 TIGSRYVEL 248
IG RY+EL
Sbjct: 588 KIGHRYIEL 596
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I ++F+ I E +HI G G+A++ F S E+A++AM +
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIV----GGEKGDAFIAFGSDEDARQAMER 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
D I ++L S+ E +R ++R
Sbjct: 60 DGGKIKEVRIKLLLSSRAEMQRIIDQAR 87
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVE 111
PP V + GLP TD DI FF+ ++ +++ NG +G AF FA E
Sbjct: 666 PPGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCE 725
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG--------IYDNDFHG 156
A +D N+G + + + A+ +G YDN F G
Sbjct: 726 RAFLQDGANLGPHVIALKTIPYSEVAQALGGHHRPDGRPDGRPDNRYDNRFDG 778
>gi|427788569|gb|JAA59736.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1004
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VV ++GLP+N ++ D+ +FF+GL+++D+L+ +++GR +G AFV F E A+ R
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQR 586
Query: 119 QNMGRRYVEVFRCKRQDYYNA-VASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ +G RY+E+ R Y A + +G+ PP + + H +
Sbjct: 587 RKIGHRYIELSVGSRDAMYAARNGDNIRPDGMPVGRRDEEPPVGHGVGPDRGPDVGHGPM 646
Query: 178 -------------------------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
+ M GLP +V +I FF +I IHI
Sbjct: 647 HGPGMGPAAPAHGAGHVLVPPGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGA 706
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+G TG A+ EF + + +RA +D +G + L
Sbjct: 707 NGVPTGHAFAEFATHADCERAFLQDGANLGPHVIAL 742
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVV-FAGPIQVEFALQRDRQ 119
V LRGL T D+ F GL I + ++ VV FA A+Q D +
Sbjct: 426 VELRGLSGAPTPRDVKDLFRGLRIFSGCIRVATSESGMKSVVVRFANKWDAREAIQGDYK 485
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ ++V +D + V+ P R D D ++
Sbjct: 486 VLCGDPIQVVPFP-EDLFEQTELLVSPSAA----------PPNQGRTRDSDM-----VVV 529
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
M+GLP++ + +++QFF +++ I + G+ATG A+VEF + + AM +
Sbjct: 530 MKGLPYNTSEQDVLQFFSGLNVLD--ILVEHDRSGRATGMAFVEFGDKRDFETAMSMQRR 587
Query: 240 TIGSRYVEL 248
IG RY+EL
Sbjct: 588 KIGHRYIEL 596
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I ++F+ I E +HI G G+A++ F S E+A++AM +
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIV----GGEKGDAFIAFGSDEDARQAMER 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
D I ++L S+ E +R ++R
Sbjct: 60 DGGKIKEVRIKLLLSSRAEMQRIIDQAR 87
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVE 111
PP V + GLP TD DI FF+ ++ +++ NG +G AF FA E
Sbjct: 666 PPGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCE 725
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG--------IYDNDFHG 156
A +D N+G + + + A+ +G YDN F G
Sbjct: 726 RAFLQDGANLGPHVIALKTIPYSEVAQALGGHHRPDGRPDGRPDNRYDNRFDG 778
>gi|422294428|gb|EKU21728.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526]
Length = 572
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDI-------VDVLLVNKNGRFSGEAFVVFAGPI 108
P ++RL GLP+ C+ D+ F + + D+ +++ + SGEA V
Sbjct: 86 PGTLILRLSGLPWKCSVADVQNFLKHIGVSTRPDPAADIKILDDS---SGEALVRVGSAE 142
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDY----------YNAVASEVNYEGIYDNDFHGSP 158
+ E AL+ +G+R+V++ + + NA A+ V + G
Sbjct: 143 EEETALKLKVGRLGKRFVDIGSTTEEAFEATPATSEEAMNAPATVVPDAATATGE-AGDG 201
Query: 159 PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
A + +++MRGLP+S + +I+ FF + + E +H+ G+A+G
Sbjct: 202 TAGEASSLTVPESSTPQGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASG 261
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+AYV F +V EA+ A+ DK IG R+++LF S+ E A
Sbjct: 262 QAYVVFETVPEAQHALKLDKEKIGERWIDLFLSSKPEMLHA 302
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN 152
+GR SGEAFVV V AL +D+Q MG R++++F + ++ V +
Sbjct: 322 DGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAA--------- 372
Query: 153 DFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
A KD + + +LKMRGLPF ++ +F Y++ + I
Sbjct: 373 ----------AVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGA 422
Query: 213 DGKATGEAYVEFVSVEEAKRAM-CKDKMTIGSRYVELF 249
DG+ TGEAYV F + E+A A +K T+ +R+++L+
Sbjct: 423 DGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLY 460
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 59/207 (28%)
Query: 54 PPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPI 108
P S P VVR+RGLP++ T+ DI FF+G + + + + GR SG+A+VVF
Sbjct: 212 PESSTPQGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFETVP 271
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYND 168
+ + AL+ D++ +G R++++F +
Sbjct: 272 EAQHALKLDKEKIGERWIDLF------------------------------------LSS 295
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
K +M H FF + I R DG+++GEA+V S E
Sbjct: 296 KPEMLH------------------AHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQE 337
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDE 255
++A+ +DK +GSR++++F S P E
Sbjct: 338 AVRQALMQDKQKMGSRWLDIFESHPGE 364
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 20/183 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+++RGLPF T D+ +F + + + +GR +GEA+V+F P A +
Sbjct: 387 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREA 446
Query: 117 -DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
++Q M R+++++ + D Y + + I G P Y +
Sbjct: 447 LNKQTMNNRWIDLYLASKGDVYTSTV----HSPIVGQAHGGCP------VYANTPMT--- 493
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++RG+P +V + E+ +FF ++I ++I G+ATGEAY EF S+++ ++AM
Sbjct: 494 -CARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMS 550
Query: 236 KDK 238
+++
Sbjct: 551 RNR 553
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 50 GGFPPPPSFPVV--RLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAG 106
GG P + P+ RLRG+P T+ ++ +FFAGL ++ + + + +GR +GEA+ F
Sbjct: 482 GGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGS 541
Query: 107 PIQVEFALQRDRQNM-----GRRYVEV 128
+ A+ R+R M G R +EV
Sbjct: 542 LDDCQQAMSRNRDYMPGGGVGDRPIEV 568
>gi|401410426|ref|XP_003884661.1| GL11864, related [Neospora caninum Liverpool]
gi|325119079|emb|CBZ54631.1| GL11864, related [Neospora caninum Liverpool]
Length = 503
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 20/214 (9%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFF---AGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVE 111
P+F VVRLRGLP++ + ++ FF L+ +VL+ + + R +GEA+V P E
Sbjct: 51 PTF-VVRLRGLPWDVQEENVVAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLRE 109
Query: 112 FALQRDR-QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
A++ + +G R++EVFR +++ A + S SR N
Sbjct: 110 QAIKDLHGRLLGTRWIEVFRASEEEFQKADDRRKTVMAAISGNTD-SLDASRRMNLN--- 165
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFK---DYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
++K+RGLP+S +SEIV+FFK ++I D + + DG+ +G A+VE S
Sbjct: 166 ------VVKLRGLPWSCSESEIVRFFKAEGGFEIHNDDVVLGVTGDGRLSGIAFVELPSP 219
Query: 228 EEAKRAM-CKDKMTIGSRYVELFPSTPDEARRAE 260
E A++A K +G R++E++P+T ++ +RA+
Sbjct: 220 EVAEKAREVLHKKYMGRRFIEVYPATREDMQRAK 253
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYK---IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++L++RGLP+S + IVQFF + I+ I I DG+ +GEAYV+FV EA
Sbjct: 403 AQVLRLRGLPYSANEQHIVQFFNGFHMAAILPSTIPI----DGRPSGEAYVQFVDAAEAF 458
Query: 232 RA-MCKDKMTIGSRYVELFPSTPDE 255
RA K+ + R +ELFPS+ E
Sbjct: 459 RAFQAKNGARMDKRMIELFPSSKQE 483
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
T ++++RGLP+ V++ +V FFK +E D + I D + TGEAYV+ ++A
Sbjct: 52 TFVVRLRGLPWDVQEENVVAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQA 111
Query: 234 MCKDKM--TIGSRYVELFPSTPDEARRAESRSR 264
+ KD +G+R++E+F ++ +E ++A+ R +
Sbjct: 112 I-KDLHGRLLGTRWIEVFRASEEEFQKADDRRK 143
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 48 YGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL--LVNKNGRFSGEAFVVFA 105
+GG S V+RLRGLP++ + I +FF G + +L + +GR SGEA+V F
Sbjct: 393 HGGMDSSNWSAQVLRLRGLPYSANEQHIVQFFNGFHMAAILPSTIPIDGRPSGEAYVQFV 452
Query: 106 GPIQVEFALQ-RDRQNMGRRYVEVFRCKRQD 135
+ A Q ++ M +R +E+F +Q+
Sbjct: 453 DAAEAFRAFQAKNGARMDKRMIELFPSSKQE 483
>gi|340380887|ref|XP_003388953.1| PREDICTED: RNA-binding protein 12B-like [Amphimedon queenslandica]
Length = 746
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 93/210 (44%), Gaps = 36/210 (17%)
Query: 55 PPSFP-------VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFV 102
PP+ P VRLRGLP++ DI F + + D +GR SGEA+V
Sbjct: 123 PPTEPRPLVESYFVRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFGSDGRVSGEAYV 182
Query: 103 VFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR 162
VE AL+ DR ++G RY+EVFR + N F P +
Sbjct: 183 EVCSGGDVERALRHDRDHLGGRYIEVFRASQ------------------NQFEYECHPMK 224
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
++++RGLP+ + I FF+ I I + G+ TGEA+V
Sbjct: 225 GP----GVGGRAGGVVRLRGLPYGSTEDNIRDFFQGIAI--SHITMQLNESGRETGEAFV 278
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
E E+ RA+ + K +G RY+E+F +T
Sbjct: 279 ELFHEEDVDRALDRHKKVLGHRYIEVFRTT 308
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 8/206 (3%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEA-FVVFAGPIQVEFALQ 115
F V + G P T+ D+ KFF + + +V ++ G +G + +V E A
Sbjct: 10 FYAVVVTGSPRETTEGDVRKFFEEIAVKEVKFQTDERGWRTGNSIYVQLETSKDFELACT 69
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASE----VNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
RD Q + + V V + DY + S G Y+ G +
Sbjct: 70 RDGQLLLSQKVGVLMISKADYERSTGSTGRGATYNNGAYNQGAEGGVKIEHETPPTEPRP 129
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSVEE 229
+ + +++RGLP+S S+I+ F KD ++ E +H + DG+ +GEAYVE S +
Sbjct: 130 LVESYFVRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFGSDGRVSGEAYVEVCSGGD 189
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
+RA+ D+ +G RY+E+F ++ ++
Sbjct: 190 VERALRHDRDHLGGRYIEVFRASQNQ 215
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP+ T+ +I FF G+ I + + +N++GR +GEAFV V+ AL R ++ +
Sbjct: 238 LRGLPYGSTEDNIRDFFQGIAISHITMQLNESGRETGEAFVELFHEEDVDRALDRHKKVL 297
Query: 122 GRRYVEVFRCKRQD 135
G RY+EVFR R D
Sbjct: 298 GHRYIEVFRTTRSD 311
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+S + EI FF ++ ++ + G+A+GE VEF + E+A AM KD
Sbjct: 586 VRMRGLPYSASEREIFDFFS--PLVPFRVTLEKDTYGRASGEGEVEFCTHEDAVNAMKKD 643
Query: 238 KMTIGSRYVELF 249
+ IGSRYVELF
Sbjct: 644 RGHIGSRYVELF 655
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ ++ +I FF+ L V L GR SGE V F A+++DR
Sbjct: 586 VRMRGLPYSASEREIFDFFSPLVPFRVTLEKDTYGRASGEGEVEFCTHEDAVNAMKKDRG 645
Query: 120 NMGRRYVEVF 129
++G RYVE+F
Sbjct: 646 HIGSRYVELF 655
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+S + EI FF ++ ++ + G+A+GE VEF + E+A AM KD
Sbjct: 399 VRMRGLPYSASEREIFDFFS--PLVPFRVTLEKDTYGRASGEGEVEFCTHEDAVNAMKKD 456
Query: 238 KMTI 241
+ I
Sbjct: 457 RGHI 460
>gi|148667169|gb|EDK99585.1| mCG133010, isoform CRA_b [Mus musculus]
Length = 149
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 27/160 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG 214
+++RGLPF K EIVQFF +I+ + I + P+G
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEG 149
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED--KIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ ++G RY+E+F S
Sbjct: 72 KKDRESMGHRYIEVFKS 88
>gi|386768028|ref|NP_001246347.1| fusilli, isoform H [Drosophila melanogaster]
gi|383302505|gb|AFH08101.1| fusilli, isoform H [Drosophila melanogaster]
Length = 526
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 29/223 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-----PSRAK 164
AL R R+++G+RY+E+FR + + ++ + H PP P+
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 166
Query: 165 RYNDKDQMEH---TEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGE 219
+ + +++RGLP+ I+ F D+ II +H+ G+ +GE
Sbjct: 167 PLLPQHLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGE 226
Query: 220 AYVEFVSVEEAKRAMCKDK-----MTIGS--RYVELFPSTPDE 255
A+++ + +EE+ R +C + M G RY+E+F + D+
Sbjct: 227 AFIQ-MDLEESAR-LCAQRRHNHYMMFGKKYRYIEVFQCSGDD 267
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 26/159 (16%)
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL+R + ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGA 44
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKD-----YKIIE--DKIHIACRPDGKATGEAYVEF 224
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F
Sbjct: 45 QV---IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLF 101
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ +A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 102 ANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 140
>gi|395735012|ref|XP_002814888.2| PREDICTED: G-rich sequence factor 1 [Pongo abelii]
Length = 459
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 30/210 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V +
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVYIE--------IFPS 303
Query: 118 RQNMGRRYVEVFRCKRQDYY---------------NAVASEVNYEGIYDNDFHGSPP--- 159
R+N R +V ++ K+ + + V ++ ++++ P
Sbjct: 304 RRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEV 363
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
P + D + MRGLPF +I+ FF K + +I + GKATGE
Sbjct: 364 PEKLPEAADFGATSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGE 421
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
A V F + E+A AM KD+ + RY+ELF
Sbjct: 422 ADVHFETHEDAVAAMHKDRSHVYHRYIELF 451
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 64/229 (27%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I
Sbjct: 126 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTVEDVLNFFSDCRIRKGENGIHF 185
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ E+N E
Sbjct: 186 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY-------------EINNED 232
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+ + S + ND ++++RGLP+S + +IV FF I++ +
Sbjct: 233 V--DALMKSLQVKSSPVVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 283
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV Y+E+FPS +E R
Sbjct: 284 DYRGRRK-TGEAYV----------------------YIEIFPSRRNEVR 309
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 378 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMH 437
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 438 KDRSHVYHRYIELF 451
>gi|395510177|ref|XP_003759357.1| PREDICTED: epithelial splicing regulatory protein 2, partial
[Sarcophilus harrisii]
Length = 470
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 22/178 (12%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L +N GR +GEA V F Q + AL+R + +MG RY+EV++ +++ +A ++E
Sbjct: 6 LCLNAQGRRNGEALVRFVDSEQRDLALERHKHHMGARYIEVYKASGEEFLK-IAGGTSHE 64
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---ED 204
A+ + +DQ+ I++MRGLPF+ ++++ F + +
Sbjct: 65 --------------VAQFLSREDQV----IIRMRGLPFTATPADVLAFLGPECPVTGGHE 106
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ PDG+ TG+A+ F E A+ A+ K K +G RY+ELF ST E ++ +R
Sbjct: 107 GLLFVRYPDGRPTGDAFALFACEELAQSALRKHKGILGKRYIELFRSTAAEVQQVLNR 164
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V +L V +GR +G+AF +FA + A
Sbjct: 76 IIRMRGLPFTATPADVLAFLGPECPVTGGHEGLLFVRYPDGRPTGDAFALFACEELAQSA 135
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ + +G+RY+E+FR + Q N S + P P +D
Sbjct: 136 LRKHKGILGKRYIELFRSTAAEVQQVLNRYTSSPLIPTLPAPLIPVLPAPFPLAGAGVRD 195
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S +
Sbjct: 196 ------CVRLRGLPYTASIDDILGFLGEVAGDIRPHGVHMVLNQQGRPSGDAFIQMKSAD 249
Query: 229 EAKRAM--CKDKMTIGSRYVELFPSTPDE 255
A A C KM + RYVE+FP + +E
Sbjct: 250 RALVAAQRCHKKM-MKERYVEVFPCSGEE 277
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++M+GLP++ +I+ FF+ Y++ D + + G+ G+A V F S++ A+RA+ +
Sbjct: 396 LVRMQGLPYTAGVKDILSFFQGYQLPADSVLVLHSFSGRPRGDALVTFPSLDAARRAVAE 455
Query: 237 DK-MTIGSRYVEL 248
+ T+G ++V+L
Sbjct: 456 EHGRTLGGQHVQL 468
>gi|403301377|ref|XP_003941367.1| PREDICTED: G-rich sequence factor 1-like [Saimiri boliviensis
boliviensis]
Length = 291
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 100/223 (44%), Gaps = 36/223 (16%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRF-SGEAFVVFAGPIQVEFALQRDRQNM 121
RGLP++C DI FFAGL+ V + V + GR +GEA+V F P AL + R+ +
Sbjct: 59 RGLPYSCNKKDIVDFFAGLNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHREEI 118
Query: 122 GRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----GIYDN 152
G RY+E+F +R + V S EVN + +++
Sbjct: 119 GNRYIEIFPSRRNEGRTHVCSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIRSMAAFES 178
Query: 153 DFHGSPPPSRAKRYNDKDQMEHTEIL---KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209
+ P ++ + T L MRGLPF +I+ FF K + +I +
Sbjct: 179 EKEIELPQEMPEKLPEAVDFGTTPCLYFVHMRGLPFQANAQDIINFFAPLKPV--RITME 236
Query: 210 CRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
KATGEA V F E+A M KD + RY+ELF S+
Sbjct: 237 YSSSRKATGEAEVHFEIHEDAVAVMLKDWSHVHHRYIELFLSS 279
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLP+S K +IV FF + + R K TGEAYV+F E A +A+ K +
Sbjct: 59 RGLPYSCNKKDIVDFFAGLNTVAITFVMDYRGRQK-TGEAYVQFEEPEMANQALLKHREE 117
Query: 241 IGSRYVELFPSTPDEAR 257
IG+RY+E+FPS +E R
Sbjct: 118 IGNRYIEIFPSRRNEGR 134
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGR-FSGEAFVVFAGPIQV 110
F P V +RGLPF DI FFA L V + + + R +GEA V F
Sbjct: 198 FGTTPCLYFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSRKATGEAEVHFEIHEDA 257
Query: 111 EFALQRDRQNMGRRYVEVF 129
+ +D ++ RY+E+F
Sbjct: 258 VAVMLKDWSHVHHRYIELF 276
>gi|221483341|gb|EEE21660.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
Length = 508
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 20/214 (9%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFF---AGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVE 111
PSF VVRLRGLP++ + ++ FF L+ +VL+ + + R +GEA+V P E
Sbjct: 50 PSF-VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLRE 108
Query: 112 FALQRDR-QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
A++ + +G R++EVFR +++ A + D
Sbjct: 109 QAIKDLHGRLLGTRWIEVFRASEEEFQKADDRRKTVMAAISGNTDSL----------DAS 158
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFK---DYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++K+RGLP+S ++EIV+FFK + I D + + DG+ +G A+VE S
Sbjct: 159 RRMNLNVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLGVTGDGRLSGIAFVELPSP 218
Query: 228 EEAKRAM-CKDKMTIGSRYVELFPSTPDEARRAE 260
+ A++A K +G R++E++P+T ++ +RA+
Sbjct: 219 DVAEKAREVLHKKYMGRRFIEVYPATREDMQRAK 252
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYK---IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++L++RGLP+S + IVQFF + I+ I I DG+ +GEAYV+FV EA
Sbjct: 408 AQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI----DGRPSGEAYVQFVDAAEAL 463
Query: 232 RA-MCKDKMTIGSRYVELFPSTPDE 255
RA K+ + R +ELFPS+ E
Sbjct: 464 RAFQAKNGGRMDKRMIELFPSSKQE 488
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++++RGLP+ V++ ++ FFK +E D + I D + TGEAYV+ ++A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 236 KDKM--TIGSRYVELFPSTPDEARRAESRSR 264
KD +G+R++E+F ++ +E ++A+ R +
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDRRK 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL--LVNKNGRFSGEAFVVFAGPIQVEFAL 114
S V+RLRGLP++ + I +FF G + +L + +GR SGEA+V F + A
Sbjct: 407 SAQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEALRAF 466
Query: 115 Q-RDRQNMGRRYVEVFRCKRQD 135
Q ++ M +R +E+F +Q+
Sbjct: 467 QAKNGGRMDKRMIELFPSSKQE 488
>gi|237839439|ref|XP_002369017.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|211966681|gb|EEB01877.1| RRM domain-containing protein [Toxoplasma gondii ME49]
Length = 513
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 20/214 (9%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFF---AGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVE 111
PSF VVRLRGLP++ + ++ FF L+ +VL+ + + R +GEA+V P E
Sbjct: 50 PSF-VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLRE 108
Query: 112 FALQRDR-QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
A++ + +G R++EVFR +++ A + D
Sbjct: 109 QAIKDLHGRLLGTRWIEVFRASEEEFQKADDRRKTVMAAISGNTDSL----------DAS 158
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFK---DYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++K+RGLP+S ++EIV+FFK + I D + + DG+ +G A+VE S
Sbjct: 159 RRMNLNVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLGVTGDGRLSGIAFVELPSP 218
Query: 228 EEAKRAM-CKDKMTIGSRYVELFPSTPDEARRAE 260
+ A++A K +G R++E++P+T ++ +RA+
Sbjct: 219 DVAEKAREVLHKKYMGRRFIEVYPATREDMQRAK 252
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYK---IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++L++RGLP+S + IVQFF + I+ I I DG+ +GEAYV+FV EA
Sbjct: 413 AQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI----DGRPSGEAYVQFVDAAEAL 468
Query: 232 RA-MCKDKMTIGSRYVELFPSTPDE 255
RA K+ + R +ELFPS+ E
Sbjct: 469 RAFQAKNGGRMDKRMIELFPSSKQE 493
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++++RGLP+ V++ ++ FFK +E D + I D + TGEAYV+ ++A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 236 KDKM--TIGSRYVELFPSTPDEARRAESRSR 264
KD +G+R++E+F ++ +E ++A+ R +
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDRRK 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL--LVNKNGRFSGEAFVVFAGPIQVEFAL 114
S V+RLRGLP++ + I +FF G + +L + +GR SGEA+V F + A
Sbjct: 412 SAQVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEALRAF 471
Query: 115 Q-RDRQNMGRRYVEVFRCKRQD 135
Q ++ M +R +E+F +Q+
Sbjct: 472 QAKNGGRMDKRMIELFPSSKQE 493
>gi|422294318|gb|EKU21618.1| rna binding protein [Nannochloropsis gaditana CCMP526]
Length = 302
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 23/184 (12%)
Query: 73 IDICKFFA--GLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+D+ FFA G + V++ +GR SGEAFVV V AL +D+Q MG R++++F
Sbjct: 1 MDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIF 60
Query: 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKK 189
+ ++ V + A KD + + +LKMRGLPF
Sbjct: 61 ESHPGELFSRVGAA-------------------AVTLGAKDDVGYAGVLKMRGLPFQTTV 101
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-CKDKMTIGSRYVEL 248
++ +F Y++ + I DG+ TGEAYV F + E+A A +K T+ +R+++L
Sbjct: 102 PDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDL 161
Query: 249 FPST 252
+ ++
Sbjct: 162 YLAS 165
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+++RGLPF T D+ +F + + + +GR +GEA+V+F P A +
Sbjct: 89 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREA 148
Query: 117 -DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
++Q M R+++++ + D Y + + I G P +
Sbjct: 149 LNKQTMNNRWIDLYLASKGDVYTSTV----HSPIVGQAHGGCPVYANTP----------M 194
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++RG+P +V + E+ +FF ++I ++I G+ATGEAY EF S+++ ++AM
Sbjct: 195 TCARLRGVPSTVTEEELFRFFAGLQVI--GLYICRDSSGRATGEAYAEFGSLDDCQQAMS 252
Query: 236 K 236
+
Sbjct: 253 R 253
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
++ FF + I R DG+++GEA+V S E ++A+ +DK +GSR++++F
Sbjct: 2 DLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFE 61
Query: 251 STPDE 255
S P E
Sbjct: 62 SHPGE 66
>gi|229891743|sp|A8WPC5.2|SYM2_CAEBR RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
Length = 634
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 24/208 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSG--EAFVVFAGPIQVEFALQ 115
+VR+RGLP++CTD I FF L + + +L +GR +G +AFV F + L
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLL 345
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
+ RQ +G+RY+E+F+ + A+EV N + +P + A +D+ +
Sbjct: 346 KHRQVIGQRYIELFK--------STAAEVQQVVKRCNLINSAPVVANAVEVSDEKK---K 394
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLP+ IV F D+ + +H+ G +GEA+++ +S E+A A
Sbjct: 395 DCVRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMIS-EQAAAA 453
Query: 234 MC----KDKMTIG--SRYVELFPSTPDE 255
+ M +G RY+E+F S+ +E
Sbjct: 454 TASGVHNNFMCVGKKKRYIEVFQSSAEE 481
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG--EAYVEFVSVEEAKRAM 234
I++MRGLP+ ++I FF+ K+ E KI R DG+ TG +A+V+F + E+A++ +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTE-KILFITRTDGRPTGNCDAFVQFETEEDAQQGL 344
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESR 262
K + IG RY+ELF ST E ++ R
Sbjct: 345 LKHRQVIGQRYIELFKSTAAEVQQVVKR 372
>gi|260797907|ref|XP_002593942.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
gi|229279174|gb|EEN49953.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
Length = 678
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
+ L+GLP+ D D+ FF GL I V + ++G+ G FV F + AL+ ++
Sbjct: 307 ISLKGLPYTAKDKDVRDFFKGLGIRKVWIDFEDGKAIGSGFVEFKSYGDQKAALRMHKKY 366
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RY+EV D + + + GS P + + + + +
Sbjct: 367 MGSRYIEVTSAPSTDMQKHI------QKFHTKPKKGSKSPGKEAKTTKELDPRAKCCMHV 420
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
LP+ K EI FF I E IH+ G+ +GE +VEFVS+ + RA
Sbjct: 421 WNLPYKASKREIENFFTGSTIAERGIHMVYTKTGEFSGEVFVEFVSISDCDRAYKLRAKR 480
Query: 241 IGSRYVELFPSTPDEARRAESRSRQ 265
+G R L P + +E R +R Q
Sbjct: 481 LGGRMALLRPISREEMRDRMARPTQ 505
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 36/226 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL+GLP++ + +DI FF+GL I D V +V G +G+AF++FA A+ R
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDGGVHIV---GGDAGDAFIIFASDEDARQAMART 60
Query: 118 RQNMGRRYVEVFRCKR---QDYYNAVASEV----------NYE----------GIYDNDF 154
+ + ++ R QD N S N E + N
Sbjct: 61 GNTIHGSPITLYLSSRKEMQDRINMSRSTTFDSPAPVATGNVEKTQSPAFGSRNVAPNGS 120
Query: 155 HGSPPPSRAKRYNDKDQMEHT--------EILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
+PPP + Y+ + +++ GL +V SEI F +I D I
Sbjct: 121 SYAPPPVQESSYSSMSSSSYNSSQFSAAQTCIQLFGLNTNVTVSEIHSLFSGLEIASDGI 180
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
I P G TG+A+V+F SV + A+ K + +R++E+ T
Sbjct: 181 VIEMDPFGNKTGKAFVKFKSVRDCSAAVRTYKEYLAARHIEVMSCT 226
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 51/236 (21%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++L GL N T +I F+GL+I V+ ++ G +G+AFV F A++
Sbjct: 152 IQLFGLNTNVTVSEIHSLFSGLEIASDGIVIEMDPFGNKTGKAFVKFKSVRDCSAAVRTY 211
Query: 118 RQNMGRRYVEVFRCKRQ------DYYNAVAS-EVNY------------------------ 146
++ + R++EV C D+ AV + V+Y
Sbjct: 212 KEYLAARHIEVMSCTESQWQIAYDFAKAVQTPAVSYANTNTGMMQRMQPQPRQTQPPPQH 271
Query: 147 --------EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
G N G+ P + D M + ++GLP++ K ++ FFK
Sbjct: 272 SRSPVMPRSGAQQNRAQGTQRPRSRSPIDRTDSM----CISLKGLPYTAKDKDVRDFFKG 327
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF--PST 252
I + I DGKA G +VEF S + K A+ K +GSRY+E+ PST
Sbjct: 328 LGIRKVWIDFE---DGKAIGSGFVEFKSYGDQKAALRMHKKYMGSRYIEVTSAPST 380
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP+S +I FF I + +HI G G+A++ F S E+A++AM +
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDGGVHIV----GGDAGDAFIIFASDEDARQAMAR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
TI + L+ S+ E + + SR
Sbjct: 60 TGNTIHGSPITLYLSSRKEMQDRINMSR 87
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 156 GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215
G PP A +N + + ++I+ ++ LP + EI+ FF Y +++D +HI G
Sbjct: 587 GGPP---APAFNTNEPL--SDIVGIQNLPMTATMEEILDFFYGYPVLKDSVHIHRSDRGD 641
Query: 216 ATGEAYVEFVSVEEA 230
TG A V F + ++A
Sbjct: 642 PTGNASVAFPTPQDA 656
>gi|395737930|ref|XP_003777005.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pongo abelii]
Length = 596
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 29/196 (14%)
Query: 61 VRLRGLPFNCTDIDI-----CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
++++GLP++C+ ++ CK G + + + GR SGEAFV Q++
Sbjct: 1 MKVQGLPWSCSADEVMHFSDCKIQNGTSGI-CFIYTREGRPSGEAFVELE-SXQMKRTGF 58
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
+DR+ MG R+VEVF+ ++ V + + + SP + ND
Sbjct: 59 KDRETMGHRHVEVFK----------SNSVEMDWVSKHTGLNSPDTA-----NDG------ 97
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ +RGLPF K EIV FF +I+ + I + G++TGEA+V S E A+ A+
Sbjct: 98 -FVWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVPLASQEIAETALK 156
Query: 236 KDKMTIGSRYVELFPS 251
K + IG RY+E+ S
Sbjct: 157 KHRERIGHRYIEIXNS 172
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 95/258 (36%), Gaps = 81/258 (31%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFV--------------- 102
V LRGLPF C +I FF+GL+IV L V+ GR +GEAFV
Sbjct: 99 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVPLASQEIAETALKKH 158
Query: 103 -------------------VFAGPIQVEFALQ----RDRQNMGRRYVEVFR--------- 130
+ P Q A+Q DR GR Y + R
Sbjct: 159 RERIGHRYIEIXNSQAEVHTYCDPCQKLMAVQWPGPSDRPGAGRGYNSIGRGAGFERMRQ 218
Query: 131 -------------CKRQDYY----NAVASEVNY--EGIYDNDFHGSPPPSRAKRYNDKDQ 171
C D Y + + NY G+ D+ R Q
Sbjct: 219 GPYGGGYRDYDDYCGCNDGYGFRSDRFGKDCNYCFSGMSDH---------RXGDSGSSFQ 269
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ RGLP+ K+ F+ + ++HI PD + TG A VEF + ++A
Sbjct: 270 STTGHCVHTRGLPYRATKNXY-NFYSPLNHV--RVHIEIGPDDRVTGRADVEFAAHKDAV 326
Query: 232 RAMCKDKMTIGSRYVELF 249
AM KDK + RY+E+F
Sbjct: 327 VAMAKDKANMQHRYMEIF 344
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC--RPDGKATGEAYVEFVSVEEAKRAMC 235
+K++GLP+S E++ F D KI I +G+ +GEA+VE S + KR
Sbjct: 1 MKVQGLPWSCSADEVMHF-SDCKIQNGTSGICFIYTREGRPSGEAFVELES-XQMKRTGF 58
Query: 236 KDKMTIGSRYVELFPSTPDE 255
KD+ T+G R+VE+F S E
Sbjct: 59 KDRETMGHRHVEVFKSNSVE 78
>gi|324527735|gb|ADY48838.1| Heterogeneous nuclear ribonucleoprotein F, partial [Ascaris suum]
Length = 166
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 18/105 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRG+PF+ T DI +FF+GLD+ DV++ + GR SGEAFV A E AL+R +
Sbjct: 42 VVRLRGIPFSATVADIKEFFSGLDVADVVIDKEQGGRPSGEAFVRLASKEHAELALERSK 101
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFH---GSPPP 160
NMG RYVEVFR ++ DN F+ G PPP
Sbjct: 102 NNMGSRYVEVFRSSGEE--------------MDNSFYTSRGIPPP 132
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
M RY+EVF + V+ + + I D +G+ + ++++
Sbjct: 1 MSSRYIEVFSVSESE----VSWMIRHGVIKSADSNGT-----------STGTSNNYVVRL 45
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RG+PFS ++I +FF + + + I G+ +GEA+V S E A+ A+ + K
Sbjct: 46 RGIPFSATVADIKEFFSGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELALERSKNN 103
Query: 241 IGSRYVELFPSTPDE 255
+GSRYVE+F S+ +E
Sbjct: 104 MGSRYVEVFRSSGEE 118
>gi|302839324|ref|XP_002951219.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
gi|300263548|gb|EFJ47748.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
Length = 245
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ 115
S +++L+GLP++ T+ DI +FFA ++ V V +GR SG AF F + AL
Sbjct: 40 SSAILKLKGLPYSATENDIRQFFAPYELKGVSFVYEPDGRPSGLAFAEFVSKEEALKALS 99
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH- 174
++ + +G+RYV + R + V G + SR R ++ +
Sbjct: 100 KNGEYIGQRYVRLLHVPRAEMEEQVRL-----GTLAIPGAAAKLRSRMMRSQQRNSAVYM 154
Query: 175 -------------TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
+ +K+RGLP+ +EI+ FF+ Y + D + I G+ +GEA+
Sbjct: 155 ATGPLQLVPTTATSPTIKIRGLPYGSSPTEILAFFQTYHYLPDTLQIGLDQLGRPSGEAW 214
Query: 222 VEFVSVEEAKRAMCK-DKMTIGSRYVEL 248
+ F S +EA RA+ ++ +G+RY+EL
Sbjct: 215 LSFSSPQEALRAVRDLNRHYLGTRYLEL 242
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207
G N F G+ P +R D+ + ILK++GLP+S +++I QFF Y++ +
Sbjct: 18 GTGANSFPGAAPEVARQRQADQS----SAILKLKGLPYSATENDIRQFFAPYEL--KGVS 71
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
PDG+ +G A+ EFVS EEA +A+ K+ IG RYV L
Sbjct: 72 FVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRLL 113
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLV--NKNGRFSGEAFVVFAGPIQ 109
P + P +++RGLP+ + +I FF + D L + ++ GR SGEA++ F+ P +
Sbjct: 163 PTTATSPTIKIRGLPYGSSPTEILAFFQTYHYLPDTLQIGLDQLGRPSGEAWLSFSSPQE 222
Query: 110 VEFALQ-RDRQNMGRRYVEVFRC 131
A++ +R +G RY+E+ C
Sbjct: 223 ALRAVRDLNRHYLGTRYLELSIC 245
>gi|328874866|gb|EGG23231.1| hypothetical protein DFA_05363 [Dictyostelium fasciculatum]
Length = 939
Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V LRGLP+ ++ + +FF LD+ + + N NG+ +G+A V FA +L R +Q
Sbjct: 433 VLLRGLPWGVSEDAVREFFQPLDVSFIDIFYNSNGKQTGDASVEFATEEDANLSLDRHKQ 492
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
MG RY+EV ++ S + + + A + + ++LK
Sbjct: 493 MMGTRYIEVISRRKHPPPPPPPSPSQLQLQSSSGQNSG----SASGGSSNTTTSNGKVLK 548
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
+RGLPFS+ +I +F Y I + I + +G+ +GEAYVEF + + A+ A+
Sbjct: 549 LRGLPFSISTMDIRKFLNGYPIKSNNILMTMNDEGRFSGEAYVEFQTSDIAQAALSNLQN 608
Query: 239 MTIGSRYVELF 249
T+ SRY+E F
Sbjct: 609 KTMMSRYIEFF 619
Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V+LRGLPF T+ DI FF GLDIV + +V + R G A+V F AL R+
Sbjct: 801 VKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRDRPMGIAYVTFTNSDDYHQALSRNN 860
Query: 119 QNMGRRYVEVF 129
Q++G RY+EVF
Sbjct: 861 QHLGPRYIEVF 871
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ +K+RGLPF+ +S+I FF I++ I I + D + G AYV F + ++ +A+
Sbjct: 799 DTVKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRD-RPMGIAYVTFTNSDDYHQALS 857
Query: 236 KDKMTIGSRYVELFPSTPDEARR 258
++ +G RY+E+FPST +
Sbjct: 858 RNNQHLGPRYIEVFPSTSKSGEK 880
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V++LRGLPF+ + +DI KF G I ++ +N GRFSGEA+V F + AL
Sbjct: 546 VLKLRGLPFSISTMDIRKFLNGYPIKSNNILMTMNDEGRFSGEAYVEFQTSDIAQAALSN 605
Query: 117 -DRQNMGRRYVEVFRCKRQDYYNA 139
+ M RY+E F C R ++++
Sbjct: 606 LQNKTMMSRYIEFFTCDRFIHFHS 629
>gi|339245667|ref|XP_003374467.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972254|gb|EFV55937.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 370
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 108/271 (39%), Gaps = 80/271 (29%)
Query: 60 VVRLRGLPFNCTDIDICKFF---------------------------AGLDIVDVLL--- 89
VVR+RGLP++ + DI KFF D VD L
Sbjct: 9 VVRVRGLPWSSKEEDIRKFFHDCSDIIGIHFTYSKEGRPSGEAYLEFGSADDVDKALRHH 68
Query: 90 ------------VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQ--- 134
+ +GR SGE FV F+ E AL R + +G RY+EVFR +
Sbjct: 69 HISDSIDDIRFGQDNSGRASGEGFVRFSNKEATERALDRHMEKIGHRYIEVFRSSMEEMD 128
Query: 135 --------------------DYYNAVASEVNYEG-----IYDNDFHGSPPPSRAKRYNDK 169
D+ Y G +Y++DF S P + Y D+
Sbjct: 129 RVTRRPQHMAGWGDGGGRIVDHDRGYYDTAGYRGGGPGSMYNDDFFTSSPINPRGGYYDQ 188
Query: 170 --------DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
L MRGLP+ ++I++FF KI+ +I R + TGEA
Sbjct: 189 GASFGGRMGGRGAGFALHMRGLPYKATANDIMEFFYPIKIMNVRILFDER--NRPTGEAD 246
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
VEF +A A+ KD+ T+G RY+ELF +T
Sbjct: 247 VEFQCESDALEALKKDRKTMGERYIELFINT 277
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 41/127 (32%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV-------- 227
++++RGLP+S K+ +I +FF D I IH +G+ +GEAY+EF S
Sbjct: 8 HVVRVRGLPWSSKEEDIRKFFHDCSDII-GIHFTYSKEGRPSGEAYLEFGSADDVDKALR 66
Query: 228 --------------------------------EEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E +RA+ + IG RY+E+F S+ +E
Sbjct: 67 HHHISDSIDDIRFGQDNSGRASGEGFVRFSNKEATERALDRHMEKIGHRYIEVFRSSMEE 126
Query: 256 ARRAESR 262
R R
Sbjct: 127 MDRVTRR 133
>gi|351700500|gb|EHB03419.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
Length = 260
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 94/209 (44%), Gaps = 25/209 (11%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRL GLPF C+ +I +FF L+I+ + ++ GR +GE FV FA
Sbjct: 10 PNDASDGTVRLLGLPFGCSKEEIVQFFQWLEIMPNGITMTMDYQGRSTGETFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR--AKRYN 167
E AL + ++ +G RY+E+FR R +G YD PP R +R
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRS----------KIKGFYD-------PPRRLLGQRLG 112
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP--DGKATGEAYVEFV 225
D+ S + + Y D R DG+A GEA VEFV
Sbjct: 113 PYDRPIGGRGGYYGAGRGSYGGFDDYGGYNSYCYGNDGFGDRMRDGRDGRAKGEADVEFV 172
Query: 226 SVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
+ E+ AM KDK + RY+ELF STP
Sbjct: 173 THEDPVAAMSKDKNNMQHRYIELFLNSTP 201
>gi|241339179|ref|XP_002408443.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
gi|215497357|gb|EEC06851.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
Length = 293
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 40/215 (18%)
Query: 68 FNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127
F +++I +G+ + +++ GR SGEA++ VE LQR +++G RY+E
Sbjct: 12 FTSKEVNIKGGISGVHMT----LSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIE 67
Query: 128 VFRCKR--------------QDYYNAVASEVN--------------YEGIYDNDFHGSPP 159
VF+ KR QD N + + G + D +G
Sbjct: 68 VFKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGFVEEDGYGDFG 127
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
S RY+ H MRGLPF + +I +FF+ + +H+ G+ +GE
Sbjct: 128 GSGGARYSATGHFVH-----MRGLPFRATERDIFEFFQPMNPM--NVHLIYEDSGRPSGE 180
Query: 220 AYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTP 253
VEF + EEA +AM KDK + RY+ELF STP
Sbjct: 181 CDVEFATHEEAVKAMSKDKAHMQHRYIELFLNSTP 215
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI +FF ++ ++V L+ +GR SGE V FA + A+ +D+
Sbjct: 141 VHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKA 200
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 201 HMQHRYIELF 210
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 191 EIVQFFKDYKI-IEDKI---HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
EI+ FF ++ I+ I H+ +G+ +GEAY+E S ++ + + + IG RY+
Sbjct: 7 EILNFFTSKEVNIKGGISGVHMTLSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYI 66
Query: 247 ELFPSTPDEARRAESRS 263
E+F S E RS
Sbjct: 67 EVFKSKRSEMDWVVKRS 83
>gi|157883792|pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
gi|297787487|pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+ K
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 104
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ +E R
Sbjct: 105 KERIGHRYIEVFKSSQEEVR 124
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 38 SSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNG 94
+S +G Q G G + VRLRGLPF CT +I +FF+GL+IV L V+ G
Sbjct: 22 ASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEG 81
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
+ +GEAFV FA E AL + ++ +G RY+EVF+ +++
Sbjct: 82 KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 122
>gi|281203425|gb|EFA77625.1| hypothetical protein PPL_12232 [Polysphondylium pallidum PN500]
Length = 1794
Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V +RG+P++ + I FF + I+ +L+N +G+ SGEA++ F A
Sbjct: 1153 VLIRGMPWSTNEGQIRDFFKPVPIMPNGITILMNSHGKQSGEAYIEFVDEDAARKANDYH 1212
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN---DKDQMEH 174
R+ M RY+EV P P A D Q H
Sbjct: 1213 RKMMRHRYIEVL----------------------------PKPRAAAIAALRRDGGQHHH 1244
Query: 175 ---TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
T+I+++RGLP++V ++++ FF Y I + I I +G+ TGE +VEFV+ E A
Sbjct: 1245 VLATKIVRLRGLPYNVTPADVISFFSGYAISGNNILIEKDYNGRVTGEGFVEFVTFETAS 1304
Query: 232 RAMCK-DKMTIGSRYVELFP 250
A+ I SRY+ELFP
Sbjct: 1305 SALKHLQHKAISSRYIELFP 1324
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 159 PPSRAKRYNDKDQMEH-----TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
P R+ ND++ + + +RG+P+S + +I FFK I+ + I I
Sbjct: 1129 PKQRSLNGNDEESDDEFRSKGETFVLIRGMPWSTNEGQIRDFFKPVPIMPNGITILMNSH 1188
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
GK +GEAY+EFV + A++A + + RY+E+ P
Sbjct: 1189 GKQSGEAYIEFVDEDAARKANDYHRKMMRHRYIEVLP 1225
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
V+LRGLP++ T+ I FF GL + ++ ++ + GR SG A+V + + AL+R++ +
Sbjct: 1721 VKLRGLPYSATEDSIADFFDGLGVTNIKIIYQRGRPSGLAYVSLSSQYDYDQALKRNKNH 1780
Query: 121 MGRRYV 126
MG V
Sbjct: 1781 MGSSVV 1786
Score = 50.1 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-DVLLVNK--NGRFSGEAFVVFAGPIQVEFALQR 116
+VRLRGLP+N T D+ FF+G I + +L+ K NGR +GE FV F AL+
Sbjct: 1250 IVRLRGLPYNVTPADVISFFSGYAISGNNILIEKDYNGRVTGEGFVEFVTFETASSALKH 1309
Query: 117 -DRQNMGRRYVEVF 129
+ + RY+E+F
Sbjct: 1310 LQHKAISSRYIELF 1323
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D D E T +K+RGLP+S + I FF + KI I R G+ +G AYV S
Sbjct: 1713 DHDYSEFT--VKLRGLPYSATEDSIADFFDGLGVTNIKI-IYQR--GRPSGLAYVSLSSQ 1767
Query: 228 EEAKRAMCKDKMTIGSRYV 246
+ +A+ ++K +GS V
Sbjct: 1768 YDYDQALKRNKNHMGSSVV 1786
>gi|427792669|gb|JAA61786.1| Putative splicing factor hnrnp-f, partial [Rhipicephalus
pulchellus]
Length = 302
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 96/223 (43%), Gaps = 53/223 (23%)
Query: 75 ICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
I GL+IV L + GR +GEAFV FA E A+ + ++ +G RY+E+F+
Sbjct: 19 ILGLIEGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKS 78
Query: 132 KRQDYYNAVASEV-----------------------------------NYEGIYDND--- 153
Q+ +AV V N+ G + D
Sbjct: 79 SLQEIRSAVGMGVPKMMRPMGSARPGPYDRAERFGGGPSRYGMGRGGRNFRGFVEEDGYA 138
Query: 154 -FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
F GS R++ H MRGLPF + +I +FF+ I +H+
Sbjct: 139 DFGGS---GGGARFSATGHFVH-----MRGLPFRATERDIFEFFQPMNPI--NVHLIYED 188
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-PSTPD 254
G+ +GE VEF + EEA +AM KDK + RY+ELF STP
Sbjct: 189 SGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNSTPS 231
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 47 GYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFA 105
G GGG + V +RGLPF T+ DI +FF ++ ++V L+ +GR SGE V FA
Sbjct: 142 GSGGGARFSATGHFVHMRGLPFRATERDIFEFFQPMNPINVHLIYEDSGRPSGECDVEFA 201
Query: 106 GPIQVEFALQRDRQNMGRRYVEVF 129
+ A+ +D+ +M RY+E+F
Sbjct: 202 THEEAVKAMSKDKAHMQHRYIELF 225
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
S I+ + +I+ + I + G++TGEA+V+F + + A++AM K K IG RY+E+F
Sbjct: 17 SPILGLIEGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIF 76
Query: 250 PSTPDEARRA 259
S+ E R A
Sbjct: 77 KSSLQEIRSA 86
>gi|358253640|dbj|GAA53549.1| epithelial splicing regulatory protein 1 [Clonorchis sinensis]
Length = 1176
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VV +R +P++ T I FF GL+++ V + +GR S A V F + + AL R
Sbjct: 380 VVEVRQVPWSATPSIIAGFFTGLNLIPGGVAIRLTDGRRSNTAIVAFTSSLNAQLALARH 439
Query: 118 R-QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK------- 169
+ Q G + E + +Q V+ G D PS + Y+
Sbjct: 440 QHQFCGALFPESPQDTQQG--------VDRAGTKDKQAQTPTKPSTLQVYSASAREFIQC 491
Query: 170 ------------DQMEHTE--ILKMRGLPFSVKKSEIVQFFKDYK---IIE-DKIHIACR 211
Q+ + E ++++RGLPF+ K +I+ FFK + ++E + I++
Sbjct: 492 AGCDQPLVSEFLSQLTNGEQVVVRVRGLPFTATKQQILDFFKAVEAPVLLEANGIYLVAY 551
Query: 212 PDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
P+G+ TG+A+V F + A RA+ + K +G RYVELF ++P E
Sbjct: 552 PEGRPTGDAFVLFSDDKTATRALLRHKDYLGDRYVELFKASPSE 595
>gi|348534026|ref|XP_003454504.1| PREDICTED: RNA-binding protein 12B-A-like [Oreochromis niloticus]
Length = 634
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 20/204 (9%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
L+GLPF+ T+ +IC FF GL + +V+L+ N+ G +G FV FA L+RDR+ +
Sbjct: 142 LKGLPFSVTEKEICDFFGGLVVDEVVLIKNRQGLNNGTGFVKFATREDAMEGLKRDREYI 201
Query: 122 GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG--SPPPSR-------------AKRY 166
G RY+E+ D++ I D F SP P++ A+R
Sbjct: 202 GSRYIEISTTTLNDWHRVTGRMPT--AIIDGSFQRGRSPIPNQRDPQHRVRSRSPVAQRR 259
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ E+ +L+ L F+V+K +I + F + K+ +D+I DGK A V F S
Sbjct: 260 IAPSEGEYCVLLE--NLSFAVEKEDIKRLFHNAKLGDDQILHLIDSDGKRKRSALVLFKS 317
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+ + A+ +K +R V P
Sbjct: 318 LRDYCEALAHEKRQFFNRLVHTRP 341
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 36/229 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAG------------- 106
V+RL+GL DI +FF GL I D V+ G EAF++FA
Sbjct: 4 VIRLQGLRVTAGSEDIRRFFTGLKIPDGG-VHIIGGERDEAFIIFASDEDARRAMTRSGG 62
Query: 107 -----PIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE--------GIYDND 153
P+ + + + + QNM R ++ +D + +V + G
Sbjct: 63 VIRGSPVTLLLSSKAEMQNMLERTTKIVE---RDQKRRLEDDVGHPRRSMEPEMGRRSAS 119
Query: 154 FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
G PP +R + D + L ++GLPFSV + EI FF ++ D++ +
Sbjct: 120 RSGDTPPPLLQRAPNTDDV----FLFLKGLPFSVTEKEICDFFGG--LVVDEVVLIKNRQ 173
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
G G +V+F + E+A + +D+ IGSRY+E+ +T ++ R R
Sbjct: 174 GLNNGTGFVKFATREDAMEGLKRDREYIGSRYIEISTTTLNDWHRVTGR 222
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 13/193 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L L F DI + F + D + L++ +G+ A V+F AL +
Sbjct: 269 VLLENLSFAVEKEDIKRLFHNAKLGDDQILHLIDSDGKRKRSALVLFKSLRDYCEALAHE 328
Query: 118 RQNMGRRYVEVFRCKRQDYYNAV---ASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R V R++ + + V G +++ P S + D ++M
Sbjct: 329 KRQFFNRLVHTRPVSRENMIALLKPQGTTVRPSG--NSERFQERPASYSSDPYDSEKM-- 384
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ +R LPF V+K EI+ FF + I ED + + +G G+A V F S EA RA+
Sbjct: 385 --CVFVRNLPFDVRKVEIIDFFHGFNITEDNVCVLQDREGAGVGQALVVFGSEAEAMRAL 442
Query: 235 CKD-KMTIGSRYV 246
D + +GS+ +
Sbjct: 443 ILDGRRFLGSKVI 455
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GL + +I +FF KI + +HI G EA++ F S E+A+RAM +
Sbjct: 4 VIRLQGLRVTAGSEDIRRFFTGLKIPDGGVHII----GGERDEAFIIFASDEDARRAMTR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRS 263
I V L S+ E + R+
Sbjct: 60 SGGVIRGSPVTLLLSSKAEMQNMLERT 86
>gi|193786713|dbj|BAG52036.1| unnamed protein product [Homo sapiens]
Length = 568
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 10/141 (7%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQ 171
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 3 MIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSP 61
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + + K
Sbjct: 62 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYK 121
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+C+ K +G+R++++ P T
Sbjct: 122 AALCRHKQYMGNRFIQVHPIT 142
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + + AL R
Sbjct: 68 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKAALCRH 127
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 128 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 180
Query: 178 L-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 181 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 240
Query: 237 DKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 241 HRKKLNGREAFVHVVTLEDMREIE 264
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 493 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 552
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 553 LNDRPIGSRKVKL 565
>gi|66361862|ref|XP_627895.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
gi|46227584|gb|EAK88519.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
Length = 569
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 59 PVVRLRGLPFNCTDIDICKFF------AGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
PVVRLRGLP+ +DI FF + DI + NK+G+ +GEA+V+ E
Sbjct: 316 PVVRLRGLPWKAAVLDIIAFFNPICRISSYDI--AISYNKDGKMTGEAYVLLPSIKAYEL 373
Query: 113 ALQRDR-QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
+L + MG+R++EV +++ + ++ + + PS D+
Sbjct: 374 SLTLLHGKRMGKRWIEVLPSSTKEFL--ICLQITSLKKQNQN------PSIFNDNKIIDR 425
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKD---YKIIEDKIHIACRPDGKATGEAYVEF---V 225
+ +L++RGLP+S + EIVQFF Y + + + + +A+GEA++
Sbjct: 426 YYNRSVLRLRGLPWSTTEIEIVQFFISGGIYGLNASDVFLGITENQRASGEAWIILPHKC 485
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAES 261
+A+R + ++ IG RY+E+F S+ E A S
Sbjct: 486 DAFDAQRIL--NRRVIGKRYIEVFISSFQELTTARS 519
>gi|148233462|ref|NP_001087973.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus laevis]
gi|52138903|gb|AAH82630.1| LOC494658 protein [Xenopus laevis]
Length = 342
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 26/139 (18%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--IL 178
MG RY+EVF+ +E+ + ++N D +E +
Sbjct: 1 MGHRYIEVFKSNN--------TEMEW----------------VLKHNSTDDVETDSDGTV 36
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A+ A+ K K
Sbjct: 37 RLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKHK 96
Query: 239 MTIGSRYVELFPSTPDEAR 257
IG RY+E+F S+ E R
Sbjct: 97 ERIGHRYIEIFKSSRGEIR 115
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF+GL IV L V+ GR +GEAFV FA E AL +
Sbjct: 35 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGK 94
Query: 117 DRQNMGRRYVEVFRCKR 133
++ +G RY+E+F+ R
Sbjct: 95 HKERIGHRYIEIFKSSR 111
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +S+I FF I ++HI DG+ATGEA VEF + E+A AM
Sbjct: 211 HFVHMRGLPFRASESDIANFFSPLTPI--RVHIDVGADGRATGEADVEFATHEDAVAAMS 268
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 269 KDKNNMQHRYIELF 282
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 47 GYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFA 105
G G G S V +RGLPF ++ DI FF+ L + V + V +GR +GEA V FA
Sbjct: 199 GAGDGSAGFHSGHFVHMRGLPFRASESDIANFFSPLTPIRVHIDVGADGRATGEADVEFA 258
Query: 106 GPIQVEFALQRDRQNMGRRYVEVF 129
A+ +D+ NM RY+E+F
Sbjct: 259 THEDAVAAMSKDKNNMQHRYIELF 282
>gi|327277960|ref|XP_003223731.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Anolis carolinensis]
Length = 326
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%)
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
A ++N + +++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V
Sbjct: 4 AGKHNGPNDSSSDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFV 63
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+F S E A++A+ K K IG RY+E+F S+ E R
Sbjct: 64 QFASKEIAEKALGKHKERIGHRYIEIFKSSKSEIR 98
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAEKALGK 77
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 78 HKERIGHRYIEIFKSSKSE 96
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 181 HFVHMRGLPFRATENDIANFFSPLTPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 238
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 239 KDKNHMQHRYIELF 252
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGFQ GG F V +RGLPF T+ DI FF+ L + V + + +GR +
Sbjct: 173 ASSGFQ----GGHF--------VHMRGLPFRATENDIANFFSPLTPIRVHIDIGADGRAT 220
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ +M RY+E+F
Sbjct: 221 GEADVEFVTHEDAVAAMSKDKNHMQHRYIELF 252
>gi|209880052|ref|XP_002141466.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557072|gb|EEA07117.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 626
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 20/211 (9%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
PV+RLRGLP+ DI F + + V ++ + R SGEA+VV + ++ +
Sbjct: 305 PVIRLRGLPWKTNIGDIALFLSPVCNVPFKNIIMSYGSDNRMSGEAYVVLSSKDDMKVCI 364
Query: 115 QRDRQN-MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN-DFHGSPPPSRAKRYNDKDQM 172
+ N MG+R++EV D+ S ++ + D F +P + Y ++
Sbjct: 365 SQLHGNRMGKRWIEVLPSSYGDFLECKKSNEIFQKLSDKIRFLSNPLLDQDSEYVNR--- 421
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDY---KIIEDKIHIACRPDGKATGEAYV---EFVS 226
+L++RGLP+S + EIVQFF+ I D + + + + +GEA V E+ +
Sbjct: 422 ---PVLRLRGLPWSTTEFEIVQFFETAGVRNISVDNVFLGYTTNSRPSGEACVVLPEWCN 478
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+ E +R + ++ IG RY+E+F S+ E
Sbjct: 479 LNEVQRVL--NRRVIGKRYIEVFISSYQEVH 507
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 27/210 (12%)
Query: 59 PVVRLRGLPFNCTDIDICKFF--AGLDIVDV----LLVNKNGRFSGEAFVVFAGPIQVEF 112
PV+RLRGLP++ T+ +I +FF AG+ + V L N R SGEA VV +
Sbjct: 422 PVLRLRGLPWSTTEFEIVQFFETAGVRNISVDNVFLGYTTNSRPSGEACVVLPEWCNLN- 480
Query: 113 ALQR--DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
+QR +R+ +G+RY+EVF Q+ ++ S ++ + SR + N
Sbjct: 481 EVQRVLNRRVIGKRYIEVFISSYQEVHSFKKSAMSL----------NKGKSRHIQRN--- 527
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ L+++GL F +++ V FF ++ + K G+ Y++F + E+A
Sbjct: 528 ----FDTLRVKGLHFCNTEADFVSFFGGCQVTAIVPITSGISSTKQFGQFYIKFATHEDA 583
Query: 231 KRAM-CKDKMTIGSRYVELFPSTPDEARRA 259
+A+ K+ + I +YVELFP+ +E R A
Sbjct: 584 YKALKSKNFVLIEDQYVELFPAKEEEFRNA 613
>gi|327277958|ref|XP_003223730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Anolis carolinensis]
Length = 341
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%)
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
A ++N + +++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V
Sbjct: 4 AGKHNGPNDSSSDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFV 63
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+F S E A++A+ K K IG RY+E+F S+ E R
Sbjct: 64 QFASKEIAEKALGKHKERIGHRYIEIFKSSKSEIR 98
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAEKALGK 77
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 78 HKERIGHRYIEIFKSSKSE 96
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 196 HFVHMRGLPFRATENDIANFFSPLTPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 253
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 254 KDKNHMQHRYIELF 267
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGFQ GG F V +RGLPF T+ DI FF+ L + V + + +GR +
Sbjct: 188 ASSGFQ----GGHF--------VHMRGLPFRATENDIANFFSPLTPIRVHIDIGADGRAT 235
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ +M RY+E+F
Sbjct: 236 GEADVEFVTHEDAVAAMSKDKNHMQHRYIELF 267
>gi|167535939|ref|XP_001749642.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771790|gb|EDQ85451.1| predicted protein [Monosiga brevicollis MX1]
Length = 948
Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 30/205 (14%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI---VDVLLVNKNGRFSGEAFVVFAGPIQ 109
P S PV+RLRGL + ++ GLD+ + N+ G+ GEA+ + P
Sbjct: 471 PDVLSSPVIRLRGLKWEWAAKEVLPMLEGLDVQADSGFICYNRQGKPIGEAYFIMGSPEA 530
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK 169
+ A R +G RY+EVF Q YY A R K
Sbjct: 531 AQAAFARSGAMLGDRYIEVFVESPQTYYRA-------------------------RALSK 565
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++ L + GLP K ++ +F ++++ + + C P+G+ G+A V + E+
Sbjct: 566 DAANDSQYLSVHGLPLDTTKHDLEEFMAPAQVLD--VMLECNPEGRCEGKACVLVCTPED 623
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPD 254
A+ A+ K+K R V++ T D
Sbjct: 624 ARLALEKNKTEFKGRSVDIEMGTAD 648
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ + GLP + T D+ +F A ++DV+L N GR G+A V+ P AL++++
Sbjct: 574 LSVHGLPLDTTKHDLEEFMAPAQVLDVMLECNPEGRCEGKACVLVCTPEDARLALEKNKT 633
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD-QMEHTEIL 178
R V++ D +N + K Y D+ + T +
Sbjct: 634 EFKGRSVDI-EMGTADTWNDLL----------------------KWYQDQLLRSTDTLVA 670
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK---RAMC 235
++RGLP+S + ++ F + I + + + +G+ TG AY F ++ AM
Sbjct: 671 RLRGLPWSCSRDDVYDFLQPSGINANNVFVCHALNGRPTGTAYAVFSGSTASQCFDLAMR 730
Query: 236 KDKMTIGSRYVELFPSTPDEARR 258
+ K IG RY+E+ ST E R
Sbjct: 731 QHKSKIGDRYIEVNRSTVAEMLR 753
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 154 FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
+ P R K D D + + ++++RGL + E++ + + D I
Sbjct: 456 WSAEPSAKRKKVKIDPDVLS-SPVIRLRGLKWEWAAKEVLPMLEGLDVQADSGFICYNRQ 514
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
GK GEAY S E A+ A + +G RY+E+F +P RA + S+
Sbjct: 515 GKPIGEAYFIMGSPEAAQAAFARSGAMLGDRYIEVFVESPQTYYRARALSK 565
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFF--AGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQ---VEFA 113
V RLRGLP++C+ D+ F +G++ +V + + NGR +G A+ VF+G + A
Sbjct: 669 VARLRGLPWSCSRDDVYDFLQPSGINANNVFVCHALNGRPTGTAYAVFSGSTASQCFDLA 728
Query: 114 LQRDRQNMGRRYVEVFR 130
+++ + +G RY+EV R
Sbjct: 729 MRQHKSKIGDRYIEVNR 745
>gi|395512126|ref|XP_003760295.1| PREDICTED: RNA-binding protein 12B [Sarcophilus harrisii]
Length = 745
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 23/207 (11%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRGLP++ T+ ++ FF GL + V+L+ + GR +G+ V FA LQR R M
Sbjct: 171 LRGLPYSATEDEVRAFFPGLCVDGVILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHYM 230
Query: 122 GRRYVEVFRCKRQDYYNA-----VASEVNY--------EGIYDNDFHG-----SPPPSRA 163
G R+VEV Q + + + EV++ GI ND H S P R
Sbjct: 231 GSRFVEVSPASEQQWIDCGGSVDIKDEVHFRSEERSPQRGI--NDAHSKKRSRSKSPRRV 288
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
KR + + ++ + ++ L SV+K +I FF+D + D+I + D K TG A+V
Sbjct: 289 KRRS-RSPHKYGFYVHLKNLSLSVEKRDIKNFFRDTDLASDQIKFLYK-DQKRTGSAFVM 346
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFP 250
F ++ + A+ K + R V + P
Sbjct: 347 FKTLRDYNSALALHKFILFHRQVLIDP 373
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 95/245 (38%), Gaps = 59/245 (24%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL+I D + G GEAF++FA A+ R
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHIIGGEI-GEAFIIFATDEDARRAMSRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYN----------------------------------------- 138
+ VE+F + + N
Sbjct: 63 FIKDSPVELFLSSKTEMQNTIEMKRKRFDRGGRELISGSKRPGSSSSGASGVGSLSNLVE 122
Query: 139 AVASEVNYEGIYDND-----------FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187
A+ +N G +D HG P + R D L +RGLP+S
Sbjct: 123 AIKKGINKPGYDPSDDPEAGFHTNGTRHGITGPRKETRTFKSD----NRYLFLRGLPYSA 178
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
+ E+ FF + D + + P G+ G+ V+F + +A + + + +GSR+VE
Sbjct: 179 TEDEVRAFFPGLCV--DGVILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHYMGSRFVE 236
Query: 248 LFPST 252
+ P++
Sbjct: 237 VSPAS 241
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 13/179 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + DI FF D+ + + K+ + +G AFV+F AL +
Sbjct: 302 VHLKNLSLSVEKRDIKNFFRDTDLASDQIKFLYKDQKRTGSAFVMFKTLRDYNSALALHK 361
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + ++ + + + Y+ GS R +K+ E
Sbjct: 362 FILFHRQVLIDPISKK-------TMLKFIECYEKKRSGSVGRERPGHIPEKNYREGHSGP 414
Query: 179 KM----RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
K+ R PF V K E+ +FF + I ED +++ G GEA V+F S E+A +A
Sbjct: 415 KLCIYIRNFPFDVTKVEVQKFFAGFSIDEDDVYLLYDDKGVGLGEALVKFKSEEQAMKA 473
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+RAM +
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I VELF S+ E + R+
Sbjct: 60 SGGFIKDSPVELFLSSKTEMQNTIEMKRK 88
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y +I + + I G GEA V V+ +EA A+
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNDQGLPLGEAIVAMVNYDEAMAAINDL 730
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 731 NDRPVGPRKVKL 742
>gi|410905475|ref|XP_003966217.1| PREDICTED: RNA-binding protein 12B-B-like [Takifugu rubripes]
Length = 627
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V LRG+PF+ T++D+ FF GL ++D VLL N +G +G V F AL+R R
Sbjct: 140 VYLRGMPFSVTEMDVSNFFDGL-LIDGIVLLKNGHGSNTGNGLVKFRSSDDTYEALKRHR 198
Query: 119 QNMGRRYVEVFRCKRQDYYNAVAS-------EVNYEGI-----YDNDFHGSPPPS-RAKR 165
Q +G RYVEV + +Y S + N E D + H PS A+R
Sbjct: 199 QYIGARYVEVSKSTANYWYQHAGSLPEMVDMQANVERDRSPLRNDRNLHQQRAPSPLAQR 258
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
N D E+ +L+ L ++ +K +I F++ + D+I DG+ T ++V F
Sbjct: 259 SNPADD-EYCVLLE--NLSYTAEKEDIRNLFQNANLQNDQILHLVSSDGRRTRSSFVLFK 315
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFP 250
++ + A+ +K +R+V P
Sbjct: 316 NLHDYCEALSHEKRLFFNRWVYTRP 340
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 22/214 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GL DI KFF GL I D V+ G EAF++FA A+ R
Sbjct: 4 VIRLQGLRITAGSEDIRKFFTGLKIPDG-GVHIIGGEHDEAFILFASDEDARRAMNRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD-NDFHGSPPPSRAKRYNDKDQ------- 171
+ V++F + + N + + + F SP SR +D Q
Sbjct: 63 CIRGSPVQLFLSSQTEMQNTLERNSEITELEEMRQFEESPRCSRRSVESDVGQRLGGRLG 122
Query: 172 ---------MEHTEIL--KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
TE L +RG+PFSV + ++ FF I D I + G TG
Sbjct: 123 NSPSPEPQSSSQTEDLYVYLRGMPFSVTEMDVSNFFDGLLI--DGIVLLKNGHGSNTGNG 180
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 254
V+F S ++ A+ + + IG+RYVE+ ST +
Sbjct: 181 LVKFRSSDDTYEALKRHRQYIGARYVEVSKSTAN 214
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L L + DI F ++ + + LV+ +GR + +FV+F AL +
Sbjct: 268 VLLENLSYTAEKEDIRNLFQNANLQNDQILHLVSSDGRRTRSSFVLFKNLHDYCEALSHE 327
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
++ R+V R+ + ++ EG D++ PP++ + N + +
Sbjct: 328 KRLFFNRWVYTRPISREKMIALLETQGPDEGQGDSERPRERPPAQNRSTNSEKC-----V 382
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
L ++ LPF V+K EI+ FF + I EDK+ + G G A V F S +A RA+
Sbjct: 383 LFVQNLPFDVRKVEIMDFFHGFDITEDKVMLLHDHTGTGMGRALVVFQSEADATRALA 440
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 99/250 (39%), Gaps = 66/250 (26%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+ ++ LPF+ ++I FF G DI + +LL + G G A VVF AL
Sbjct: 382 VLFVQNLPFDVRKVEIMDFFHGFDITEDKVMLLHDHTGTGMGRALVVFQSEADATRALAL 441
Query: 117 DRQNMGRRYVE---VFRC-------------------KRQDYYNAVASEVNYEGIY---D 151
+ GRR++ + +C R+ Y+ SE G Y
Sbjct: 442 N----GRRFLGSEVMLKCISLSQMQQVGGDSPLQEPPPRKLRYSDRRSENYCSGEYPDHR 497
Query: 152 NDFHGSPPPSRAKRYN------DKD----------------------QMEHTE---ILKM 180
N G+ P S KRY D D QMEH + ++++
Sbjct: 498 NPHDGNGPMS--KRYGQPNSGWDSDSSPAGSCSQQDRGSGVCGDFGPQMEHVDGPTLVRL 555
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKM 239
LPF ++ EI F Y++I + + GK +G A F S +EA AM +
Sbjct: 556 VNLPFQIRTEEIYDFCYGYRLIPGSVSLQYEQSGKPSGSATAAFESRQEAMIAMAELSGR 615
Query: 240 TIGSRYVELF 249
IGSR V+L
Sbjct: 616 PIGSRKVQLL 625
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GL + +I +FF KI + +HI G EA++ F S E+A+RAM +
Sbjct: 4 VIRLQGLRITAGSEDIRKFFTGLKIPDGGVHII----GGEHDEAFILFASDEDARRAMNR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I V+LF S+ E + R+ +
Sbjct: 60 SGGCIRGSPVQLFLSSQTEMQNTLERNSE 88
>gi|126322103|ref|XP_001368765.1| PREDICTED: RNA-binding protein 12B-like [Monodelphis domestica]
Length = 745
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 25/208 (12%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
LRGLP++ T+ ++ FF GL VD +LL + GR +G+ V FA LQR R
Sbjct: 171 LRGLPYSATEDEVRAFFPGL-CVDGIILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHY 229
Query: 121 MGRRYVEVFRCKRQDYYNA-----VASEVNY--------EGIYDNDFHG-----SPPPSR 162
MG R+VEV Q + + + EV++ GI ND H S P R
Sbjct: 230 MGSRFVEVSPASEQQWIDCGGSADIKDEVHFRSEERSPQRGI--NDAHSKKRSRSKSPRR 287
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
KR + + ++ + ++ L SV+K +I FF+D + D+I + D K TG A+V
Sbjct: 288 MKRRS-RSPHKYGFYVHLKNLSLSVEKRDIKNFFRDTDLASDQIKFLYK-DQKRTGSAFV 345
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFP 250
F ++ + A+ K + R V + P
Sbjct: 346 MFKTLRDYNSALALHKFILFHRQVLIDP 373
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 59/245 (24%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL+I D + G GEAF++FA A+ R
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHIIGGEI-GEAFIIFATDEDARRAMSRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYN----------------------------------------- 138
+ VE+F + + N
Sbjct: 63 FIKDSPVELFLSSKTEMQNTIEMKRKRFDRGGRELISGSKRPGSSSSGTSGVGSLSNLVE 122
Query: 139 AVASEVNYEGIYDND-----------FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV 187
A+ +N G +D HG P + R D L +RGLP+S
Sbjct: 123 AIKKGINKPGYDPSDDPEAGFHTNGTRHGITGPRKETRTFKSD----NRYLFLRGLPYSA 178
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247
+ E+ FF + D I + P G+ G+ V+F + +A + + + +GSR+VE
Sbjct: 179 TEDEVRAFFPGLCV--DGIILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHYMGSRFVE 236
Query: 248 LFPST 252
+ P++
Sbjct: 237 VSPAS 241
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + DI FF D+ + + K+ + +G AFV+F AL +
Sbjct: 302 VHLKNLSLSVEKRDIKNFFRDTDLASDQIKFLYKDQKRTGSAFVMFKTLRDYNSALALHK 361
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + ++ + + + Y+ GS R +K E
Sbjct: 362 FILFHRQVLIDPISKK-------TMLKFIECYEKKRSGSVGRERPGHIPEKTYREGHSGP 414
Query: 179 KM----RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
K+ R PF V K E+ +FF + I ED +++ G GEA V+F S E+A +A
Sbjct: 415 KLCIYIRNFPFDVTKVEVQKFFAGFSIDEDDVYLLYDDKGVGLGEALVKFKSEEQAMKA 473
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+RAM +
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I VELF S+ E + R+
Sbjct: 60 SGGFIKDSPVELFLSSKTEMQNTIEMKRK 88
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y +I + + I G GEA V V+ +EA A+
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNEQGLPLGEAIVAMVNYDEAMAAINDL 730
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 731 NDRPVGPRKVKL 742
>gi|324509132|gb|ADY43846.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 192
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
P +RLRGLPF + D+ F G+ + + +GR SGE +V V+ AL
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ DR + RY+EVF + +A V + I + G A Y
Sbjct: 63 KLDRNEINGRYIEVFTVSEGE----LAMMVRHGVIRGS---GESESRYASNY-------- 107
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S +I +FFK + + + I G+ +GEA+V S E A+ A+
Sbjct: 108 --VVRLRGLPYSANVDDIKEFFKGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELAL 163
Query: 235 CKDKMTIGSRY 245
+ K +GSRY
Sbjct: 164 ERSKNNMGSRY 174
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
T +++RGLPF+ K+S++ F + I I G+A+GE YVE K A
Sbjct: 4 ETNFIRLRGLPFAAKESDVRNFLQG--ITAKSITFTLTSSGRASGECYVELNDNSAVKEA 61
Query: 234 MCKDKMTIGSRYVELFPSTPDE 255
+ D+ I RY+E+F + E
Sbjct: 62 LKLDRNEINGRYIEVFTVSEGE 83
>gi|224052108|ref|XP_002190951.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Taeniopygia guttata]
Length = 327
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
K D ++++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V
Sbjct: 5 GKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFV 64
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+F S E A+ A+ K K IG RY+E+F S+ E R
Sbjct: 65 QFASKEIAENALGKHKERIGHRYIEIFKSSKSEIR 99
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KD
Sbjct: 185 VHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 242
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 243 KNHMQHRYIELF 254
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 185 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 244
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 245 HMQHRYIELF 254
>gi|145552659|ref|XP_001462005.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429842|emb|CAK94632.1| unnamed protein product [Paramecium tetraurelia]
Length = 441
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK---NGRFSGEAFVVFAGPIQVEFALQRD 117
+++RGLPF CT D+ F + +L K NG F+GEA+V +E+
Sbjct: 230 LKIRGLPFQCTKSDLINFLEMPRLKKDMLTMKFQQNGLFTGEAYVQVNSIEDLEYLRTFH 289
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---SRAKRYNDKD--QM 172
+ M RY+E+F +Y A S N F P S N+++ Q
Sbjct: 290 KSQMDHRYLEIFNSCFDEYNKAQKS---------NQFLKKINPKITSEVGNINEENEYQC 340
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ +LK+RGLP+S + ++ FFK+ I+ I GKA G+ +V ++E A++
Sbjct: 341 QQQGVLKLRGLPWSSTEQDVRTFFKNNSKIKT-IKFLYDDTGKAKGQCFVLVKNLETAEK 399
Query: 233 AMCK-DKMTIGSRYVELF 249
K K ++GSRY+E+F
Sbjct: 400 LKQKYHKKSLGSRYIEVF 417
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%)
Query: 147 EGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206
E ++ F P + + ++ + + LK+RGLPF KS+++ F + ++ +D +
Sbjct: 199 EDEFETIFKKKENPQQKDQIQEESKPKQQFYLKIRGLPFQCTKSDLINFLEMPRLKKDML 258
Query: 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
+ + +G TGEAYV+ S+E+ + K + RY+E+F S DE +A+ ++
Sbjct: 259 TMKFQQNGLFTGEAYVQVNSIEDLEYLRTFHKSQMDHRYLEIFNSCFDEYNKAQKSNQ 316
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL--LVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
V++LRGLP++ T+ D+ FF + + L + G+ G+ FV+ E Q+
Sbjct: 345 VLKLRGLPWSSTEQDVRTFFKNNSKIKTIKFLYDDTGKAKGQCFVLVKNLETAEKLKQKY 404
Query: 117 DRQNMGRRYVEVFRCKRQDY 136
++++G RY+EVF C +++Y
Sbjct: 405 HKKSLGSRYIEVFICNQREY 424
>gi|328707990|ref|XP_001948909.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 571
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAV---ASE 143
L ++ +GR +GEA V F + A +R ++G RY+EV++ +D+ N +SE
Sbjct: 19 TLCLSAHGRCNGEAVVRFVNQEHRDMATKRHNHHIGSRYIEVYKANGEDFINVAGGNSSE 78
Query: 144 VNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII- 202
V E H I++MRGLP+ +++ FF++ +
Sbjct: 79 V--ETFLAKGAHA--------------------IVRMRGLPYYCTAKDVITFFENGEQTS 116
Query: 203 -----EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
E+ + +PDG+ATG A+V F ++A +A+ K + +G+RY+EL T E +
Sbjct: 117 SVMYGEEGVLFVKKPDGRATGYAFVLFADEDDACKALSKHRDLMGTRYIELIRCTKAEVQ 176
Query: 258 RAESR 262
+ +R
Sbjct: 177 QFLNR 181
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 37/227 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--------VLLVNK-NGRFSGEAFVVFAGPIQV 110
+VR+RGLP+ CT D+ FF + VL V K +GR +G AFV+FA
Sbjct: 90 IVRMRGLPYYCTAKDVITFFENGEQTSSVMYGEEGVLFVKKPDGRATGYAFVLFADEDDA 149
Query: 111 EFALQRDRQNMGRRYVEVFRCKR---QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN 167
AL + R MG RY+E+ RC + Q + N + D+ + + P + N
Sbjct: 150 CKALSKHRDLMGTRYIELIRCTKAEVQQFLNRGMDQSVRSTASDSIGNITIPVTTTAGVN 209
Query: 168 DKDQ--MEHTEIL----------------KMRGLPFSVKKSEIVQFFKDY--KIIEDKIH 207
+ + H +L ++RGLP+ I++F ++ I+ +H
Sbjct: 210 NSPTALLGHVPLLPLPQHVITSGIRKDCIRLRGLPYEANVEHILKFLGEHSKNIVFHGVH 269
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRA-MCKDKMTIG----SRYVELF 249
I G A+GEA+++ + A +A M K+ I RY++LF
Sbjct: 270 IVYNSVGHASGEAFIQMNNEGSAAQAVMAKNHKYISFGKKRRYIKLF 316
>gi|224052106|ref|XP_002190890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Taeniopygia guttata]
Length = 342
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%)
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
D ++++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E
Sbjct: 11 NDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKE 70
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A+ A+ K K IG RY+E+F S+ E R
Sbjct: 71 IAENALGKHKERIGHRYIEIFKSSKSEIR 99
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KD
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 257
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 258 KNHMQHRYIELF 269
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 260 HMQHRYIELF 269
>gi|326923399|ref|XP_003207924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Meleagris gallopavo]
Length = 323
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E
Sbjct: 12 DTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEI 71
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A+ A+ K K IG RY+E+F S+ E R
Sbjct: 72 AENALGKHKERIGHRYIEIFKSSKSEIR 99
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 184 PFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGS 243
PF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KDK +
Sbjct: 187 PFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQH 244
Query: 244 RYVELF 249
RY+ELF
Sbjct: 245 RYIELF 250
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 67 PFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125
PF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+ +M RY
Sbjct: 187 PFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRY 246
Query: 126 VEVF 129
+E+F
Sbjct: 247 IELF 250
>gi|449269002|gb|EMC79814.1| Heterogeneous nuclear ribonucleoprotein H3 [Columba livia]
Length = 343
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%)
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
D ++++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E
Sbjct: 11 NDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKE 70
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A+ A+ K K IG RY+E+F S+ E R
Sbjct: 71 IAENALGKHKERIGHRYIEIFKSSKSEIR 99
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KD
Sbjct: 201 VHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 258
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 259 KNHMQHRYIELF 270
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 201 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 260
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 261 HMQHRYIELF 270
>gi|60302824|ref|NP_001012610.1| heterogeneous nuclear ribonucleoprotein H3 [Gallus gallus]
gi|60099043|emb|CAH65352.1| hypothetical protein RCJMB04_21b18 [Gallus gallus]
Length = 342
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D ++++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E
Sbjct: 12 DTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEI 71
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEAR 257
A+ A+ K K IG RY+E+F S+ E R
Sbjct: 72 AENALGKHKERIGHRYIEIFKSSKSEIR 99
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ + +
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM KD
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 257
Query: 238 KMTIGSRYVELF 249
K + RY+ELF
Sbjct: 258 KNHMQHRYIELF 269
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 260 HMQHRYIELF 269
>gi|24653910|ref|NP_725483.1| fusilli, isoform B [Drosophila melanogaster]
gi|21645398|gb|AAM70984.1| fusilli, isoform B [Drosophila melanogaster]
gi|27820059|gb|AAO25059.1| GH20047p [Drosophila melanogaster]
gi|71834259|gb|AAZ41802.1| GH11127p [Drosophila melanogaster]
gi|220947106|gb|ACL86096.1| fus-PB [synthetic construct]
Length = 633
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 110 VEFALQRDRQNMGRRYVEVFRCKR---QDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR Q N NYE
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 166
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEIL----------KMRGLPFSVKKS 190
G + + G+ P + T+ L ++RGLP+
Sbjct: 167 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 226
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 227 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 284
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 285 KYRYIEVFQCSGDD 298
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 26/159 (16%)
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL+R + ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGA 44
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKD-----YKIIE--DKIHIACRPDGKATGEAYVEF 224
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F
Sbjct: 45 QV---IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLF 101
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ +A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 102 ANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 140
>gi|90018164|gb|ABD83895.1| hypothetical protein [Ictalurus punctatus]
Length = 157
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 27/154 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLP++C+ ++ +FF+ + + L + GR SGEAFV +++ AL
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLTYTREGRPSGEAFVELESEDELKIAL 67
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + P + E
Sbjct: 68 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNGP------------ETEG 105
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
++++RGLPF K EIV+FF +I+ + I +
Sbjct: 106 DGLVRLRGLPFGCSKEEIVRFFSGLEIVPNGITL 139
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED--KIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S E+ +FF D K+ + IH+ +G+ +GEA+VE S +E K A+
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLTYTREGRPSGEAFVELESEDELKIAL 67
Query: 235 CKDKMTIGSRYVELFPS 251
KD+ T+G RYVE+F S
Sbjct: 68 KKDRETMGHRYVEVFKS 84
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 14/201 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
PP+ VRLRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 283 PPTPHTVRLRGAPFNVTEKNVTEFLAPLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQA 342
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ +R+ MG RY+EVFR K NA + +G N P P R N++++ +
Sbjct: 343 LKCNREYMGGRYIEVFREK-----NAPTA----KGPLKNS--AKPWPGRTLGENEEEEDL 391
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R LP+S + ++ Q F + + + + K G A+V F+ E A +
Sbjct: 392 ADSGRLFVRNLPYSSTEEDLEQLFSRFGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 451
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A + D R + + PST
Sbjct: 452 AYAEVDGQVFQGRMLHVLPST 472
>gi|18266700|ref|NP_543172.1| heterogeneous nuclear ribonucleoprotein H [Rattus norvegicus]
gi|18104446|gb|AAL59557.1| Ratsg1 [Rattus norvegicus]
Length = 372
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 22/137 (16%)
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
MG RYVEVF+ N E + G P A ND +++
Sbjct: 1 MGHRYVEVFKSN------------NVEMDWVLKHTGPNSPDTA---NDG-------FVRL 38
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF + EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K K
Sbjct: 39 RGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKER 98
Query: 241 IGSRYVELFPSTPDEAR 257
IG RY+E+F S+ E R
Sbjct: 99 IGHRYIEIFKSSRAEVR 115
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C++ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 36 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 95
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 96 KERIGHRYIEIFKSSRAE 113
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 197 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVTGEA 254
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 255 DVEFATHEDAVAAMSKDKANMQHRYVELF 283
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + +GR +GEA V F
Sbjct: 199 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEF 258
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 259 ATHEDAVAAMSKDKANMQHRYVELF 283
>gi|24653903|ref|NP_725480.1| fusilli, isoform A [Drosophila melanogaster]
gi|7303049|gb|AAF58117.1| fusilli, isoform A [Drosophila melanogaster]
Length = 557
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-----PSRAK 164
AL R R+++G+RY+E+FR + + ++ + H PP P+
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 166
Query: 165 RYNDK---DQMEHT-------------------------------EILKMRGLPFSVKKS 190
+ + H+ +++RGLP+
Sbjct: 167 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 226
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 227 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 284
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 285 KYRYIEVFQCSGDD 298
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 26/159 (16%)
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL+R + ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGA 44
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKD-----YKIIE--DKIHIACRPDGKATGEAYVEF 224
I++MRGLP+ +++ FF +++ + + +PDG+ATG+A+V F
Sbjct: 45 QV---IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLF 101
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ +A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 102 ANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 140
>gi|290977130|ref|XP_002671291.1| predicted protein [Naegleria gruberi]
gi|284084859|gb|EFC38547.1| predicted protein [Naegleria gruberi]
Length = 666
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 23/203 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-------------------NGRFSGEA 100
++++R +PF+ T+ +I FF+GL I V N+ NG+ +GE
Sbjct: 263 ILKMRNVPFSATEDEIETFFSGLTIATVQSRNQAEQSNETRRRKVYFVLNPMNGKRTGEV 322
Query: 101 FVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP 160
FV F Q+ A +R+++ + RY+E+F + + + + P
Sbjct: 323 FVEFTCHDQMLQAAKRNKEKIRNRYIELFHSSISELRASQYYIQQQQQQNYFPYQHITRP 382
Query: 161 SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
+ N K I+K+ GLP S +++EI + F + E IH+ D +TGEA
Sbjct: 383 RISGVQNRKSNF----IVKIEGLPTSFEENEIAELFNGLSLSEAGIHLIFGEDECSTGEA 438
Query: 221 YVEFVSVEEAKRAMCKDKMTIGS 243
+VEFV+ E +A+ ++ TI S
Sbjct: 439 FVEFVNEESFAKALEQNDTTISS 461
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 39/192 (20%)
Query: 83 DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR-DRQNMGRRYVEVFRCKRQDYYNAVA 141
D+ +L++N G+ +GEA+V F ++E A + D++N+G RY+E+F+ ++ ++
Sbjct: 190 DMDIILMLNYFGKSTGEAYVRFESEEELEKARKTMDKKNLGSRYIEIFKSTIEEMEHS-- 247
Query: 142 SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI 201
R N K+ + +++ILKMR +PFS + EI FF I
Sbjct: 248 -------------------RRVLERNLKN-LNNSKILKMRNVPFSATEDEIETFFSGLTI 287
Query: 202 IE---------------DKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
K++ P +GK TGE +VEF ++ +A ++K I +RY
Sbjct: 288 ATVQSRNQAEQSNETRRRKVYFVLNPMNGKRTGEVFVEFTCHDQMLQAAKRNKEKIRNRY 347
Query: 246 VELFPSTPDEAR 257
+ELF S+ E R
Sbjct: 348 IELFHSSISELR 359
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 173 EHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR-PDGKATGEAYVEFVSVEEA 230
EH E LKMRGLPFS + EI +FF Y ED I + TG Y+ F + EA
Sbjct: 581 EHPERTLKMRGLPFSSTEKEIAEFFAGYDFEEDSIRFKMDFKRNRQTGICYIRFRTKTEA 640
Query: 231 KRAMC-KDKMTIGSRYVELFPSTP 253
+RA +++ IG RY+ELF TP
Sbjct: 641 ERAANERNRCNIGDRYIELFTITP 664
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 44 QPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI----VDVLLVNKNGRFSGE 99
QP+ Y F P +++RGLPF+ T+ +I +FFAG D + + K R +G
Sbjct: 573 QPFKYKL-FEHPER--TLKMRGLPFSSTEKEIAEFFAGYDFEEDSIRFKMDFKRNRQTGI 629
Query: 100 AFVVFAGPIQVEFAL-QRDRQNMGRRYVEVF 129
++ F + E A +R+R N+G RY+E+F
Sbjct: 630 CYIRFRTKTEAERAANERNRCNIGDRYIELF 660
>gi|312094676|ref|XP_003148104.1| hypothetical protein LOAG_12543 [Loa loa]
Length = 304
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV----------------LLVNKNGRFSGE 99
P +RLRGLPF + D+ F + I + + NGR SGE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 100 AFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP 159
+V V+ A + DR + RY+EVF + + V GS
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGV---------IKGSG- 112
Query: 160 PSRAKRYNDKDQMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
D D + ++++RGLP+S +I +FF ++ + I P G+ +G
Sbjct: 113 -------GDADSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVID--KEPGGRPSG 163
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
EA+V + E A+ A+ + K +GSRYVE+F S+ DE
Sbjct: 164 EAFVRLATKEYAELALERSKNYMGSRYVEVFRSSADE 200
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLP++ T DI +FF+GL++ D ++ + GR SGEAFV A E AL+R +
Sbjct: 124 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 183
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS 161
MG RYVEVFR + N+ + G PPP+
Sbjct: 184 NYMGSRYVEVFRSSADEMDNSYYAA-----------RGIPPPT 215
>gi|442746139|gb|JAA65229.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 206
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 42/194 (21%)
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV---------- 144
R +GEAFV FA E A+ + ++ +G RY+E+F+ Q+ +AV V
Sbjct: 1 RSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPLGTA 60
Query: 145 ------------------------NYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
N+ G + D +G S RY+ H M
Sbjct: 61 RPGPYDRGDRFGGPSRYGMGRGGRNFRGFVEEDGYGDFGGSGGARYSATGHFVH-----M 115
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
RGLPF + +I +FF+ + +H+ G+ +GE VEF + EEA +AM KDK
Sbjct: 116 RGLPFRATERDIFEFFQPMNPM--NVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAH 173
Query: 241 IGSRYVELF-PSTP 253
+ RY+ELF STP
Sbjct: 174 MQHRYIELFLNSTP 187
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI +FF ++ ++V L+ ++ GR SGE V FA + A+ +D+
Sbjct: 113 VHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKA 172
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 173 HMQHRYIELF 182
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 215 KATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
++TGEA+V+F + + A++AM K K IG RY+E+F S+ E R A
Sbjct: 1 RSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSA 45
>gi|71649626|ref|XP_813529.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878421|gb|EAN91678.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG--LDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VVRL GLP++ ++ I FFA LD D +L G G FV P VE ++++
Sbjct: 55 VVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFTEGLHRGTGFVRLKRPEDVEESIKKL 114
Query: 117 DRQNM-GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RQ++ RYVE+ ++ R + ++Q T
Sbjct: 115 HRQHIDANRYVELTASTEEE--------------------------RQRILEQQEQGCKT 148
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF+ + ++ +F + + ++ I +G+ TG+A+++ + E+ + A
Sbjct: 149 HVLRLRGLPFTSTEEDLREFVRSVPGV-TRVDICRDMEGRNTGDAFIQLATEEDVEEAKQ 207
Query: 236 KDKMTIGSRYVELFPST 252
T+GSRY+E+ PST
Sbjct: 208 LHNKTMGSRYIEVLPST 224
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 45 PYGYGGGFPPPPSFP-----------------VVRLRGLPFNCTDIDICKFFAGLDIVDV 87
PYG GG P P FP VVR+RG+P+ T+ I +FFAG+ I
Sbjct: 312 PYGVPGG--PQPLFPMFPGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQ 369
Query: 88 ---LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
++ N+ R +GEAFV + AL+R+ MG RY+EVF+
Sbjct: 370 GVHMVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 416
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG+P++ + I +FF KI +H+ + TGEA+VE + + A+ +
Sbjct: 342 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 401
Query: 237 DKMTIGSRYVELFPST 252
+ +G+RY+E+F S+
Sbjct: 402 NGGAMGNRYIEVFQSS 417
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV-- 225
D M T ++++ GLP+SV + I FF +++ +++K I +G G +V
Sbjct: 46 DIPVMIETRVVRLHGLPYSVSEETIRAFFAEFE-LDEKDPILHFTEGLHRGTGFVRLKRP 104
Query: 226 -SVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
VEE+ + + + + +RYVEL ST +E +R + Q
Sbjct: 105 EDVEESIKKLHRQHID-ANRYVELTASTEEERQRILEQQEQ 144
>gi|403372892|gb|EJY86355.1| hypothetical protein OXYTRI_15124 [Oxytricha trifallax]
Length = 635
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 21/200 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV-DVLLVNKNGR--FSGEAFVVFAGPIQVEFALQ-R 116
++LRGLPF+ +I +FF+ + V D + + + G +GE ++F + A Q R
Sbjct: 447 LKLRGLPFSIKRDEINQFFSNFNYVRDSVKLGRTGEGLLTGEGAILFHSEEDSKKAFQQR 506
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
Q++G R++E+++ DY N +E + + +Y E
Sbjct: 507 QGQSIGHRWIELYQITIADYQN-------FE-----EMQKQRRTVKLGKYITDSNRER-- 552
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K+RGLPF V+ +I +FFKDY++ + + I +GK TG V F E A++A
Sbjct: 553 IMKLRGLPFQVQPDDITRFFKDYQVTKSDVVIE-EINGKKTGFGLVFFKDQETAQQAQEN 611
Query: 237 -DKMTIGSRYVELF-PSTPD 254
++ IG+RYVE+ P+ D
Sbjct: 612 MNRKKIGNRYVEIMEPTITD 631
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
LK+RGLPFS+K+ EI QFF ++ + D + + +G TGE + F S E++K+A +
Sbjct: 447 LKLRGLPFSIKRDEINQFFSNFNYVRDSVKLGRTGEGLLTGEGAILFHSEEDSKKAFQQR 506
Query: 238 K-MTIGSRYVELFPSTPDEARRAESRSRQ 265
+ +IG R++EL+ T + + E +Q
Sbjct: 507 QGQSIGHRWIELYQITIADYQNFEEMQKQ 535
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
+++LRGLPF DI +FF + DV++ NG+ +G V F + A +
Sbjct: 553 IMKLRGLPFQVQPDDITRFFKDYQVTKSDVVIEEINGKKTGFGLVFFKDQETAQQAQENM 612
Query: 117 DRQNMGRRYVEVF 129
+R+ +G RYVE+
Sbjct: 613 NRKKIGNRYVEIM 625
>gi|395849855|ref|XP_003797528.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 51/207 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
VRLRGLPF CT +I +FF+G +SG + ++G + + D
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGAG------------YSG--YEEYSG-LSDGYGFTTDL-- 87
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD---QMEHTEI 177
GR ++ C G+YD+ RY D + Q
Sbjct: 88 FGR---DLSYC--------------LSGMYDH------------RYGDGEFAVQSTTGHC 118
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD
Sbjct: 119 VHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 176
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSR 264
+ + RY+ELF ++ A S+
Sbjct: 177 RANMQHRYIELFLNSTTGASNGAYSSQ 203
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 22/86 (25%)
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL++DR++MG +Y+EVF+ R +E+++ + P+ A ND
Sbjct: 1 MALKKDRESMGHQYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG-- 43
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFK 197
+++RGLPF K EIVQFF
Sbjct: 44 -----FVRLRGLPFGCTKEEIVQFFS 64
>gi|339253438|ref|XP_003371942.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967723|gb|EFV52113.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 505
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFA----GLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP++CT I +FF G+ + ++ VNK +GR +G+AFV+ A
Sbjct: 51 IIRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIASEEDA 110
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-----FHGSPPPSRAKR 165
+ AL + ++ +G RY+E+FR + + + I N GS PP A
Sbjct: 111 QKALSKHKEVIGSRYIELFRSTSAEVQQVINKSLEVAKIDLNTMPTVGLLGSLPPRGAIP 170
Query: 166 YNDKDQME------------HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACR 211
Q++ + +++RGLP+ + I++F ++ I+ +H+
Sbjct: 171 TPVPGQIQPILPPQAFITGCRKDCVRLRGLPYEAEVQHILEFLGEFSKHIVLQGVHMVYN 230
Query: 212 PDGKATGEAYVEFVSVEEAKRAMCKDK----MTIG--SRYVELFPSTPDE 255
G +GEA+++ S + A D+ M G RY+E+F + D+
Sbjct: 231 AQGNPSGEAFIQMDS-DIAAATTAADRHNKYMHTGKKQRYIEVFQCSADD 279
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKD----YKII--EDKIHIACRPDGKATGEAYVEFVS 226
E I++MRGLP+ I++FF+ K+ E I + DG+ATG+A+V S
Sbjct: 47 ECVAIIRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIAS 106
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
E+A++A+ K K IGSRY+ELF ST E ++ ++S +
Sbjct: 107 EEDAQKALSKHKEVIGSRYIELFRSTSAEVQQVINKSLE 145
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 157 SPPPSRAKRYNDKDQMEH--TEILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPD 213
SPP S + Q T +L +RGLPF+V ++++ FF+ + +I D IH+ P+
Sbjct: 406 SPPVSPTNYFASPGQANQPPTPVL-LRGLPFNVTPTDVLSFFQGFPEITMDCIHLQRAPN 464
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249
G+ GEA + F S EA+RA+ + + G+R +E+F
Sbjct: 465 GQLNGEAIILFQSRMEAERAVIECSRQLFGNRPIEMF 501
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN----KNGRFSGEAFVVFAGPI 108
PP P V LRGLPFN T D+ FF G + + ++ NG+ +GEA ++F +
Sbjct: 424 PPTP----VLLRGLPFNVTPTDVLSFFQGFPEITMDCIHLQRAPNGQLNGEAIILFQSRM 479
Query: 109 QVEFA-LQRDRQNMGRRYVEVFRC 131
+ E A ++ RQ G R +E+F C
Sbjct: 480 EAERAVIECSRQLFGNRPIEMFIC 503
>gi|343961567|dbj|BAK62373.1| heterogeneous nuclear ribonucleoprotein H [Pan troglodytes]
Length = 357
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 20 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 79
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 80 HKERIGHRYIEIFKSSRAEVR 100
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 21 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 80
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 81 KERIGHRYIEIFKSSRAE 98
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 183 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 240
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 241 VEFATHEDAVAAMSKDKANMQHRYVELF 268
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 184 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 243
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 244 ATHEDAVAAMSKDKANMQHRYVELF 268
>gi|426255654|ref|XP_004021463.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Ovis aries]
Length = 331
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S+E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 238 KDKNNMQHRYIELFLNSTP 256
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|426255652|ref|XP_004021462.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Ovis aries]
Length = 346
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 54/80 (67%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S+E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 266
>gi|355761375|gb|EHH61795.1| hypothetical protein EGM_19914 [Macaca fascicularis]
Length = 357
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+ K
Sbjct: 20 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 79
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E R
Sbjct: 80 HKERIGHRYIEIFKSSRAEVR 100
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 21 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 80
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 81 KERIGHRYIEIFKSSRAE 98
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 183 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 240
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 241 VEFATHEDAVAAMSKDKANMQHRYVELF 268
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 184 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 243
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 244 ATHEDAVAAMSKDKANMQHRYVELF 268
>gi|71425877|ref|XP_813187.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878047|gb|EAN91336.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 448
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG--LDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VVRL GLP++ ++ I FFA LD D +L G G FV P VE ++++
Sbjct: 53 VVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFTEGLHRGTGFVRLKRPEDVEESIKKL 112
Query: 117 DRQNM-GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RQ++ RYVE+ ++ R + ++Q T
Sbjct: 113 HRQHIDANRYVELTASTEEE--------------------------RQRILEQQEQGCKT 146
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF+ + ++ +F + ++ I +G+ TG+A+++ + E+ + A
Sbjct: 147 HVLRLRGLPFTSTEEDLREFVSSVPGV-TRVDICRDMEGRNTGDAFIQLATEEDVEEAKQ 205
Query: 236 KDKMTIGSRYVELFPST 252
T+GSRY+E+ PST
Sbjct: 206 LHNKTMGSRYIEVLPST 222
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 45 PYGYGGGFPPPPSFP-----------------VVRLRGLPFNCTDIDICKFFAGLDIVDV 87
PYG GG P P FP VVR+RG+P+ T+ I +FFAG+ I
Sbjct: 310 PYGVPGG--PQPLFPMFPGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQ 367
Query: 88 ---LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
++ N+ R +GEAFV + AL+R+ MG RY+EVF+
Sbjct: 368 GVHMVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 414
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG+P++ + I +FF KI +H+ + TGEA+VE + + A+ +
Sbjct: 340 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 399
Query: 237 DKMTIGSRYVELFPST 252
+ +G+RY+E+F S+
Sbjct: 400 NGGAMGNRYIEVFQSS 415
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV-- 225
D M T ++++ GLP+SV + I FF +++ +++K I +G G +V
Sbjct: 44 DIPVMVETRVVRLHGLPYSVSEETIRAFFAEFE-LDEKDPILHFTEGLHRGTGFVRLKRP 102
Query: 226 -SVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
VEE+ + + + + +RYVEL ST +E +R + Q
Sbjct: 103 EDVEESIKKLHRQHID-ANRYVELTASTEEERQRILEQQEQ 142
>gi|405977012|gb|EKC41485.1| Dual specificity mitogen-activated protein kinase kinase 5
[Crassostrea gigas]
Length = 672
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFF-AGLDIVDVLL------VNKNGRFSGEAFVVFAGPIQVEF 112
+ LRGLP+ T D+ +FF + VDV + V+ + R G FV +
Sbjct: 17 TIMLRGLPYKATAADVLRFFKVPVMFVDVDVLGGKDGVHLHARTMGTCFVDI-NKQDLAK 75
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
A + + + +G RY+E+ E +++ IY G PP+
Sbjct: 76 AKKYNLREIGNRYIEILE------------ETDFKRIYP----GYTPPT---------PQ 110
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
E ++K++GLPF K +I FF ++I I + TGEAYV+F S E A++
Sbjct: 111 EKGTLVKLKGLPFGCTKQDIATFFSGFEIAPHGIMKPVKRHASLTGEAYVKFASKEIAEK 170
Query: 233 AMCKDKMTIGSRYVELFPS 251
A+ + +GSRY+ ++P+
Sbjct: 171 ALTRHNEYMGSRYINVYPT 189
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 48 YGGGFPPPPSF--PVVRLRGLPFNCTDIDICKFFAGLDIVDVLL---VNKNGRFSGEAFV 102
Y G PP P +V+L+GLPF CT DI FF+G +I + V ++ +GEA+V
Sbjct: 101 YPGYTPPTPQEKGTLVKLKGLPFGCTKQDIATFFSGFEIAPHGIMKPVKRHASLTGEAYV 160
Query: 103 VFAGPIQVEFALQRDRQNMGRRYVEVF 129
FA E AL R + MG RY+ V+
Sbjct: 161 KFASKEIAEKALTRHNEYMGSRYINVY 187
>gi|149052457|gb|EDM04274.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Rattus
norvegicus]
Length = 134
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 27/142 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFF 196
+++RGLPF K EIVQFF
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFF 131
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>gi|71121745|gb|AAH99792.1| Hnrph1 protein [Rattus norvegicus]
Length = 184
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 31/158 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFF----KDYKIIEDKIHI 208
+++RGLPF K EIVQFF K + +E K+ +
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGILKYLRAVELKLEL 147
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>gi|149602744|ref|XP_001512376.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Ornithorhynchus anatinus]
Length = 332
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
++N + +++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F
Sbjct: 6 KHNGPNDTASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQF 65
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
S E A+ A+ K K IG RY+E+F S+ E +
Sbjct: 66 ASKEIAENALGKHKERIGHRYIEIFKSSRSEIK 98
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 77
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 78 HKERIGHRYIEIFKSSRSE 96
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 181 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 238
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 239 KDKNNMQHRYIELF 252
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 183 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 242
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 243 NMQHRYIELF 252
>gi|407393563|gb|EKF26660.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi marinkellei]
Length = 454
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG--LDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VVRL GLP++ ++ I FFA LD D +L G G FV P VE ++++
Sbjct: 59 VVRLHGLPYSVSEETIRAFFAEFELDENDPILHFTEGLHRGTGFVRLKKPEDVEESIKKL 118
Query: 117 DRQNM-GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RQ++ RYVE+ ++ R + ++Q T
Sbjct: 119 HRQHIDANRYVELTASTEEE--------------------------RQRILEQQEQGCKT 152
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF+ + ++ +F + + ++ I +G+ TG+A+++ + E+ + A
Sbjct: 153 HVLRLRGLPFTSTEEDLREFVRCVPGV-TRVDICRDLEGRNTGDAFIQLATEEDVEEAKQ 211
Query: 236 KDKMTIGSRYVELFPST 252
T+GSRY+E+ PST
Sbjct: 212 LHNKTMGSRYIEVLPST 228
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 18/104 (17%)
Query: 45 PYGYGGG-------FP--PP------PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-- 87
PYG GG FP PP PS VVR+RG+P+ T+ I +FFAG+ I
Sbjct: 316 PYGVSGGPQPLFPMFPGHPPMMAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGV 375
Query: 88 -LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
++ N+ R +GEAFV + AL+R+ MG RY+EVF+
Sbjct: 376 HMVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQ 419
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG+P++ + I +FF KI +H+ + TGEA+VE + + A+ +
Sbjct: 346 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 405
Query: 237 DKMTIGSRYVELFPST 252
+ +G+RY+E+F S+
Sbjct: 406 NGGAMGNRYIEVFQSS 421
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKR 232
T ++++ GLP+SV + I FF ++++ E+ +H +G G +V E+ +
Sbjct: 57 TRVVRLHGLPYSVSEETIRAFFAEFELDENDPILHFT---EGLHRGTGFVRLKKPEDVEE 113
Query: 233 AMCK--DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
++ K + +RYVEL ST +E +R + Q
Sbjct: 114 SIKKLHRQHIDANRYVELTASTEEERQRILEQQEQ 148
>gi|402910822|ref|XP_003918047.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Papio
anubis]
Length = 386
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
RYN + L +GLPF K EIVQFF +I+ + + + G++TGEA+V+F
Sbjct: 54 RYNSFSHSSNDGYLGFQGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQF 113
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
S E A++A+ K K IG RY+E+F S+ E R
Sbjct: 114 ASQEIAEKALKKHKERIGHRYIEIFKSSRAEVR 146
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 245 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 302
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 303 KANMQHRYVELF 314
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+GLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++
Sbjct: 69 FQGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKE 128
Query: 120 NMGRRYVEVFRCKRQD 135
+G RY+E+F+ R +
Sbjct: 129 RIGHRYIEIFKSSRAE 144
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 230 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 289
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 290 ATHEDAVAAMAKDKANMQHRYVELF 314
>gi|301755896|ref|XP_002913784.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Ailuropoda melanoleuca]
gi|281346969|gb|EFB22553.1| hypothetical protein PANDA_001623 [Ailuropoda melanoleuca]
Length = 346
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|395501374|ref|XP_003755070.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 [Sarcophilus
harrisii]
Length = 342
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
++N + +++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F
Sbjct: 6 KHNGPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQF 65
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
S E A+ A+ K K IG RY+E+F S+ E +
Sbjct: 66 ASKEIAENALGKHKERIGHRYIEIFKSSRSEIK 98
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 77
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 78 HKERIGHRYIEIFKSSRSE 96
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 196 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDALAAMS 253
Query: 236 KDKMTIGSRYVELFPST 252
KDK + RY+ELF ++
Sbjct: 254 KDKNNMQHRYIELFLNS 270
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 198 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDALAAMSKDKN 257
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 258 NMQHRYIELF 267
>gi|242017923|ref|XP_002429433.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514365|gb|EEB16695.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 498
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFF----AGLDIVD----VLLVNK-NGRFSGEAFVVFAGPIQV 110
++R+RGLP+ C+ + FF DI D +L V K +GR +G+AFV F +
Sbjct: 41 IIRMRGLPYECSSKQVIDFFREGEQSCDIFDGENGILFVKKPDGRSTGDAFVQFIHESEA 100
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP------------ 158
AL + ++ +G RY+E+FR A +V+ IY P
Sbjct: 101 IAALSKHKELIGTRYIELFRSTP-----AEVEQVSRNDIYIKAQESKPRVPAVQLPLVAP 155
Query: 159 -PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRPDGK 215
PP+ ++ + + +++RGLP+ + I+ F D I+ +H+ G+
Sbjct: 156 IPPAAVPQHVITSGTK-KDCIRLRGLPYEAQVEHILDFLGDNANNIVLQGVHMVYNVHGQ 214
Query: 216 ATGEAYVEF---VSVEEAKRAMCKDKMTIG--SRYVELF 249
+GEA+++ VS +A M G RYVE+F
Sbjct: 215 PSGEAFIQMDSEVSASQAANHCHHRYMNFGKKQRYVEVF 253
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFFK------DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
I++MRGLP+ +++ FF+ D E+ I +PDG++TG+A+V+F+ EA
Sbjct: 41 IIRMRGLPYECSSKQVIDFFREGEQSCDIFDGENGILFVKKPDGRSTGDAFVQFIHESEA 100
Query: 231 KRAMCKDKMTIGSRYVELFPSTPDEARR 258
A+ K K IG+RY+ELF STP E +
Sbjct: 101 IAALSKHKELIGTRYIELFRSTPAEVEQ 128
>gi|334313810|ref|XP_001369254.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Monodelphis domestica]
Length = 377
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%)
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
++N + +++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F
Sbjct: 36 KHNGPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQF 95
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
S E A+ A+ K K IG RY+E+F S+ E +
Sbjct: 96 ASKEIAENALGKHKERIGHRYIEIFKSSRSEIK 128
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 48 TVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 107
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 108 HKERIGHRYIEIFKSSRSE 126
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 226 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 283
Query: 236 KDKMTIGSRYVELF 249
KDK + RY+ELF
Sbjct: 284 KDKNNMQHRYIELF 297
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 218 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 265
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 266 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 297
>gi|344275083|ref|XP_003409343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Loxodonta africana]
Length = 335
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 181 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 238
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 239 KDKNNMQHRYIELFLNSTP 257
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 183 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 242
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 243 NMQHRYIELF 252
>gi|330864791|ref|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [Bos taurus]
Length = 317
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
+DK + RY+ELF STP
Sbjct: 253 RDKNNMQHRYIELFLNSTP 271
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ RD+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSRDKN 256
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|14141159|ref|NP_067676.2| heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens]
gi|291404273|ref|XP_002718502.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Oryctolagus cuniculus]
gi|296220548|ref|XP_002756353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Callithrix jacchus]
gi|332218215|ref|XP_003258254.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Nomascus leucogenys]
gi|332834182|ref|XP_003312632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan troglodytes]
gi|338716820|ref|XP_003363523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Equus caballus]
gi|345798943|ref|XP_860394.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Canis lupus familiaris]
gi|397520485|ref|XP_003830347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan paniscus]
gi|402880660|ref|XP_003903916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Papio anubis]
gi|403273869|ref|XP_003928720.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Saimiri boliviensis boliviensis]
gi|410975231|ref|XP_003994037.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Felis catus]
gi|426364934|ref|XP_004049546.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Gorilla gorilla gorilla]
gi|7739443|gb|AAF68849.1|AF132361_1 hnRNP 2H9A [Homo sapiens]
gi|7739440|gb|AAF68847.1| hnRNP 2H9A [Homo sapiens]
gi|24981041|gb|AAH39824.1| Heterogeneous nuclear ribonucleoprotein H3 (2H9) [Homo sapiens]
gi|119574667|gb|EAW54282.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_c
[Homo sapiens]
gi|158256526|dbj|BAF84236.1| unnamed protein product [Homo sapiens]
gi|261861160|dbj|BAI47102.1| heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
gi|296472170|tpg|DAA14285.1| TPA: heterogeneous nuclear ribonucleoprotein H3 (2H9) [Bos taurus]
gi|380812320|gb|AFE78034.1| heterogeneous nuclear ribonucleoprotein H3 isoform b [Macaca
mulatta]
gi|410221432|gb|JAA07935.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258986|gb|JAA17459.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302444|gb|JAA29822.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342071|gb|JAA39982.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
Length = 331
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 238 KDKNNMQHRYIELFLNSTP 256
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|395820624|ref|XP_003783663.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Otolemur garnettii]
Length = 331
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 238 KDKNNMQHRYIELFLNSTP 256
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|354477668|ref|XP_003501041.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Cricetulus griseus]
gi|344247616|gb|EGW03720.1| Heterogeneous nuclear ribonucleoprotein H3 [Cricetulus griseus]
Length = 325
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 238 KDKNNMQHRYIELFLNSTP 256
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|344275081|ref|XP_003409342.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Loxodonta africana]
Length = 350
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 196 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 253
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 254 KDKNNMQHRYIELFLNSTP 272
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 188 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 235
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 236 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 267
>gi|62898443|dbj|BAD97161.1| heterogeneous nuclear ribonucleoprotein H3 isoform a variant [Homo
sapiens]
Length = 346
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY++LF STP
Sbjct: 253 KDKNNMQHRYIKLFLNSTP 271
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+++F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIKLF 266
>gi|14141157|ref|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens]
gi|343780936|ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa]
gi|388452508|ref|NP_001253678.1| heterogeneous nuclear ribonucleoprotein H3 [Macaca mulatta]
gi|73952781|ref|XP_536369.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Canis lupus familiaris]
gi|149689928|ref|XP_001503654.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Equus caballus]
gi|291404271|ref|XP_002718501.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Oryctolagus cuniculus]
gi|296220546|ref|XP_002756352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Callithrix jacchus]
gi|332218213|ref|XP_003258253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Nomascus leucogenys]
gi|332834180|ref|XP_521495.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan troglodytes]
gi|397520483|ref|XP_003830346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan paniscus]
gi|402880658|ref|XP_003903915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Papio anubis]
gi|403273867|ref|XP_003928719.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Saimiri boliviensis boliviensis]
gi|410975227|ref|XP_003994035.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Felis catus]
gi|410975229|ref|XP_003994036.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Felis catus]
gi|426364932|ref|XP_004049545.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Gorilla gorilla gorilla]
gi|23503095|sp|P31942.2|HNRH3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H3;
Short=hnRNP H3; AltName: Full=Heterogeneous nuclear
ribonucleoprotein 2H9; Short=hnRNP 2H9
gi|5542020|gb|AAD45179.1|L32610_1 ribonucleoprotein [Homo sapiens]
gi|7739436|gb|AAF68843.1| hnRNP 2H9 [Homo sapiens]
gi|119574665|gb|EAW54280.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|119574670|gb|EAW54285.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|351702487|gb|EHB05406.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
gi|355562560|gb|EHH19154.1| hypothetical protein EGK_19802 [Macaca mulatta]
gi|355782891|gb|EHH64812.1| hypothetical protein EGM_18125 [Macaca fascicularis]
gi|380784275|gb|AFE64013.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|380812322|gb|AFE78035.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|410221428|gb|JAA07933.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410221430|gb|JAA07934.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258984|gb|JAA17458.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258988|gb|JAA17460.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302442|gb|JAA29821.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302446|gb|JAA29823.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342067|gb|JAA39980.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342069|gb|JAA39981.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|432106705|gb|ELK32357.1| Heterogeneous nuclear ribonucleoprotein H3 [Myotis davidii]
gi|440895821|gb|ELR47915.1| Heterogeneous nuclear ribonucleoprotein H3 [Bos grunniens mutus]
Length = 346
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 266
>gi|395820622|ref|XP_003783662.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Otolemur garnettii]
Length = 346
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 266
>gi|354477666|ref|XP_003501040.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Cricetulus griseus]
Length = 340
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 266
>gi|392355325|ref|XP_003752006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Rattus
norvegicus]
gi|148700118|gb|EDL32065.1| mCG11326, isoform CRA_b [Mus musculus]
gi|149043912|gb|EDL97363.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 331
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 238 KDKNNMQHRYIELFLNSTP 256
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|119637823|ref|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [Mus musculus]
gi|157818423|ref|NP_001102002.1| heterogeneous nuclear ribonucleoprotein H3 [Rattus norvegicus]
gi|148700117|gb|EDL32064.1| mCG11326, isoform CRA_a [Mus musculus]
gi|149043914|gb|EDL97365.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_c [Rattus norvegicus]
gi|182887935|gb|AAI60206.1| Heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
Length = 346
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 266
>gi|148700119|gb|EDL32066.1| mCG11326, isoform CRA_c [Mus musculus]
gi|149043913|gb|EDL97364.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 314
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTI 241
KDK +
Sbjct: 253 KDKNNM 258
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 120 NM 121
NM
Sbjct: 257 NM 258
>gi|431904171|gb|ELK09593.1| Heterogeneous nuclear ribonucleoprotein H3 [Pteropus alecto]
Length = 405
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 76 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 135
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 136 HKERIGHRYIEIFRSSRSEIK 156
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 76 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 135
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 136 HKERIGHRYIEIFRSSRSE 154
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 254 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 311
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 312 KDKNNMQHRYIELFLNSTP 330
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 256 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 315
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 316 NMQHRYIELF 325
>gi|348575706|ref|XP_003473629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Cavia
porcellus]
Length = 372
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 43 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 102
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 103 HKERIGHRYIEIFRSSRSEIK 123
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 43 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 102
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 103 HKERIGHRYIEIFRSSRSE 121
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 221 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 278
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 279 KDKNNMQHRYIELFLNSTP 297
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 213 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 260
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 261 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 292
>gi|159163272|pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + + K A+C+ K
Sbjct: 30 LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQ 89
Query: 240 TIGSRYVELFPST 252
+G+R++++ P T
Sbjct: 90 YMGNRFIQVHPIT 102
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 28 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 87
Query: 118 RQNMGRRYVEV 128
+Q MG R+++V
Sbjct: 88 KQYMGNRFIQV 98
>gi|395530818|ref|XP_003767484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Sarcophilus harrisii]
Length = 344
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 100/244 (40%), Gaps = 57/244 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFA----------- 105
++ +RGLPF CT I FF+ L++V +L ++ G+ +G A V FA
Sbjct: 20 LLCIRGLPFGCTKETIRHFFSELEMVPSGIILPMDFQGKSTGTALVQFASQEAAEIAIRK 79
Query: 106 ------------------------GPIQVEFALQR----DRQNMGRRYVEVFRCKRQDYY 137
GP Q QR D Q +G R ++ R K D
Sbjct: 80 HKGRPAPSHLGNLKPVSIQMPTHWGPFQAFMVRQRPGPYDTQGLGLR-LKTIRGKSSDKG 138
Query: 138 NAVASEVNYEGIYD-----NDFHGSPPPSRAKRYNDKDQMEHT-------EILKMRGLPF 185
G YD N+ H +R D E + MRGLP+
Sbjct: 139 IRPRVCERVHGNYDCKNRSNNNHNIDVNISTRRIADNRYGEFIFHNATCHHWVHMRGLPY 198
Query: 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
++I FF + ++HI DGKATGEA V+FV+ E+A AM K+K + RY
Sbjct: 199 KATVNDIYHFFS--PLCPLRVHIEIGQDGKATGEADVDFVTHEDAVAAMAKEKTYMQHRY 256
Query: 246 VELF 249
+ELF
Sbjct: 257 IELF 260
>gi|149043915|gb|EDL97366.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 186
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
>gi|449666027|ref|XP_002162990.2| PREDICTED: probable RNA-binding protein 19-like [Hydra
magnipapillata]
Length = 914
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
DQ + +KMRG+PF + E+++FFK +I D I DGK++G A+V+F ++E+
Sbjct: 299 DQDIKSMTVKMRGIPFKCSEKEVIEFFK--PLIIDDIRFPKNKDGKSSGYAFVDFKTIED 356
Query: 230 AKRAMCKDKMTIGSRYVELFP 250
K A+ KDK I RY+ELFP
Sbjct: 357 VKSALKKDKQKIQGRYIELFP 377
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V++RG+PF C++ ++ +FF L I D+ NK+G+ SG AFV F V+ AL++D+Q
Sbjct: 307 VKMRGIPFKCSEKEVIEFFKPLIIDDIRFPKNKDGKSSGYAFVDFKTIEDVKSALKKDKQ 366
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK-----DQMEH 174
+ RY+E+F + E + NDF+ K++ K + +
Sbjct: 367 KIQGRYIELFPVN------------DLENLKQNDFN--------KKWTQKGDEADEDISD 406
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
T L +R L ++ + + F + ++E + I + K TG A+V F+ + A +A
Sbjct: 407 TGRLFVRNLSYTCTEDSLTNLFSQFGPLVEINLPID-KNSNKTTGFAFVTFMMADHAIKA 465
Query: 234 MCK-DKMTIGSRYVELFPSTPDEARRAES 261
M K D R + + P + + ++
Sbjct: 466 MSKLDGSIFEGRILHILPGKSKKVKEEDN 494
Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 159 PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
P KR N+K+Q+ ++ R +PF E+ + F + I+ + + + G G
Sbjct: 777 PKVSRKRANEKNQVSSKMVV--RNIPFEATVKELQELFSTFGHIK-SLRLPKKITGTHRG 833
Query: 219 EAYVEFVSVEEAKR---AMCKDKMTIGSRYV 246
A+++F + ++AKR A+C+ G R V
Sbjct: 834 FAFIDFTTKQDAKRAFKALCQSTHLYGRRLV 864
>gi|390475715|ref|XP_003735008.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Callithrix jacchus]
Length = 421
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 20/106 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L+++ GR +GEAFV FA E AL +
Sbjct: 107 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLMMDYQGRSTGEAFVQFASKEITENALGK 166
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR 162
++ +G RY+E+FR R + EG YD PP R
Sbjct: 167 HKERIGHRYIEIFRSSRNE----------IEGFYD-------PPKR 195
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E + A+ K
Sbjct: 108 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLMMDYQGRSTGEAFVQFASKEITENALGKH 167
Query: 238 KMTIGSRYVELFPSTPDE 255
K IG RY+E+F S+ +E
Sbjct: 168 KERIGHRYIEIFRSSRNE 185
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 270 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 327
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + +Y+ELF STP
Sbjct: 328 KDKNNMQHQYIELFLNSTP 346
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 262 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 309
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM +Y+E+F
Sbjct: 310 GEADVEFVTHEDAVAAMSKDKNNMQHQYIELF 341
>gi|395741721|ref|XP_003780739.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H3 [Pongo abelii]
Length = 346
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-CK 236
+ MRGLPF +++I FF E +HI DG+ATGEA VEFV+ E+A AM +
Sbjct: 205 VHMRGLPFRATENDIANFFSPLNQYE--VHIDIGADGRATGEADVEFVTHEDAVAAMFXR 262
Query: 237 DKMTIGSRYVELF-PSTP 253
K+ + RY+ELF STP
Sbjct: 263 IKINMQHRYIELFLNSTP 280
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ +V + + +GR +
Sbjct: 195 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNQYEVHIDIGADGRAT 242
Query: 98 GEAFVVFAGPIQVEFAL-QRDRQNMGRRYVEVF 129
GEA V F A+ R + NM RY+E+F
Sbjct: 243 GEADVEFVTHEDAVAAMFXRIKINMQHRYIELF 275
>gi|148700120|gb|EDL32067.1| mCG11326, isoform CRA_d [Mus musculus]
Length = 186
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
>gi|159163318|pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In
Heterogeneous Nuclear Ribonucleoprotein H
Length = 104
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 77
Query: 238 KMTIGSRYVELFPSTPDEARRA 259
K IG RY+E+F S+ E R +
Sbjct: 78 KERIGHRYIEIFKSSRAEVRTS 99
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 77
Query: 118 RQNMGRRYVEVFRCKRQD 135
++ +G RY+E+F+ R +
Sbjct: 78 KERIGHRYIEIFKSSRAE 95
>gi|301609834|ref|XP_002934460.1| PREDICTED: RNA-binding protein 12B-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 659
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L GLP+ ++D+ +FF G ++VD+ V +NG G A+V F + AL RD +
Sbjct: 159 VFLYGLPYTAGELDVKEFFHGFNVVDLHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNE 218
Query: 120 NMGRRYVEVFRCKRQDYYNA----------VASEVNYEGIYDNDFHG---SPPPSRAKRY 166
+G RY+ V C Q + A V + + + H SP R +
Sbjct: 219 YIGHRYICVKLCNEQKWIEAGGPTDERNESVRKNRQWSPRFPSKNHSRSRSPKIHRTRSR 278
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ +Q + +L M +SV+K++I FF D I + +I + +G T E +V +
Sbjct: 279 SPHNQQFYLHLLNM---SYSVQKTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKN 335
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP-STPDEARRAESRSRQ 265
+ ++ + K + R V ++P + D ES RQ
Sbjct: 336 EKFYQKCLGLHKGLLNGREVWVYPIARKDMLELIESSERQ 375
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP DI FF+GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHITGGKI-GEAFIIFATDEDARRAMSRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN------------ 167
+ + +E+F + + + + E+N +G D P P +K N
Sbjct: 63 FIKKSRIELFLSSKAEMQHTL--EMNRKGNKD----LGPTPDISKLLNVMKKGIYQKNMA 116
Query: 168 ---------DKDQMEHTE-------------ILKMR----------GLPFSVKKSEIVQF 195
D ++TE I ++ GLP++ + ++ +F
Sbjct: 117 NKSNVEAGFDSSGAKYTEENMPRPKYQGKKDIWPLKDNGYGYVFLYGLPYTAGELDVKEF 176
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
F + +++ +H + R +G G AYV+F SV++A+ A+ +D IG RY+
Sbjct: 177 FHGFNVVD--LHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYI 225
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ L + ++ DI FF DI D LL+++NG + E FV+ + L
Sbjct: 287 LHLLNMSYSVQKTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKNEKFYQKCLGLH 346
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ + R V V+ R+D + S + + + S PS K++ D+ ++
Sbjct: 347 KGLLNGREVWVYPIARKDMLELIESSERQQL----ERNTSEDPSPKKKFRDRSNLK--RY 400
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ +R PF+V KSE+ +FF + + E I + G GEA V F S +A
Sbjct: 401 MYLRNFPFNVSKSEVQKFFAGFPVDEQDIFLLYDSRGVGLGEALVTFPSEHQA 453
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP ++I FF I + +HI G GEA++ F + E+A+RAM +
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHIT----GGKIGEAFIIFATDEDARRAMSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + +R+
Sbjct: 60 SGGFIKKSRIELFLSSKAEMQHTLEMNRK 88
>gi|195583688|ref|XP_002081648.1| GD25607 [Drosophila simulans]
gi|194193657|gb|EDX07233.1| GD25607 [Drosophila simulans]
Length = 628
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 22/140 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQ---V 380
Query: 177 ILKMRGLPFSVKKSEIVQFF 196
I++MRGLP+ +++ FF
Sbjct: 381 IIRMRGLPYDATAKQVLDFF 400
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELF 249
A+ + K IG+RY+E++
Sbjct: 333 RDMALKRHKHHIGTRYIEVY 352
>gi|407866924|gb|EKG08457.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG--LDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
VVRL GLP++ ++ I FFA LD D +L G G FV VE ++++
Sbjct: 55 VVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFTEGLHRGTGFVRLKRTEDVEESIKKL 114
Query: 117 DRQNM-GRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RQ++ RYVE+ ++ R + ++Q T
Sbjct: 115 HRQHIDANRYVELTASTEEE--------------------------RQRILEQQEQGCKT 148
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF+ + ++ +F + + ++ I +G+ TG+A+++ + E+ + A
Sbjct: 149 HVLRLRGLPFTSTEEDLREFVRSVPGV-TRVDICRDMEGRNTGDAFIQLATEEDVEEAKQ 207
Query: 236 KDKMTIGSRYVELFPST 252
T+GSRY+E+ PST
Sbjct: 208 LHNKTMGSRYIEVLPST 224
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 45 PYGYGGGFPPPPSFP-----------------VVRLRGLPFNCTDIDICKFFAGLDIVDV 87
PYG GG P P FP VVR+RG+P+ T+ I +FFAG+ I
Sbjct: 312 PYGVPGG--PQPLFPMFPGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQ 369
Query: 88 ---LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
++ N+ R +GEAFV + AL+R+ MG RY+EVF+
Sbjct: 370 GVHMVYNEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 416
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG+P++ + I +FF KI +H+ + TGEA+VE + + A+ +
Sbjct: 342 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 401
Query: 237 DKMTIGSRYVELFPST 252
+ +G+RY+E+F S+
Sbjct: 402 NGGAMGNRYIEVFQSS 417
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D M T ++++ GLP+SV + I FF +++ +++K I +G G +V
Sbjct: 46 DIPVMIETRVVRLHGLPYSVSEETIRAFFAEFE-LDEKDPILHFTEGLHRGTGFVRLKRT 104
Query: 228 EEAKRAMCK--DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
E+ + ++ K + +RYVEL ST +E +R + Q
Sbjct: 105 EDVEESIKKLHRQHIDANRYVELTASTEEERQRILEQQEQ 144
>gi|119574668|gb|EAW54283.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_d
[Homo sapiens]
Length = 149
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 78 KERIGHRYIEIFRSSRSEIK 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA E AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 117 DRQNMGRRYVEVFRCKRQD 135
++ +G RY+E+FR R +
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
>gi|24646109|ref|NP_731640.1| glorund, isoform C [Drosophila melanogaster]
gi|23171055|gb|AAN13533.1| glorund, isoform C [Drosophila melanogaster]
Length = 179
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IH-IACRPDGKATGEAYVEFVSVEE 229
E + +++RGLP+S EI+ F ++ + IH + R DGK TGEAYVE S E+
Sbjct: 46 ESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+ A +K ++G RY+E+F +TP EA+ A
Sbjct: 106 VEEARKLNKASMGHRYIEVFTATPKEAKEA 135
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 36/149 (24%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNK--NGRFSGEAFVVFAGPI 108
P F VRLRGLP++ T +I F +++ + + LV +G+ +GEA+V A
Sbjct: 47 SPKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQE 104
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYND 168
VE A + ++ +MG RY+EVF + P AK
Sbjct: 105 DVEEARKLNKASMGHRYIEVF---------------------------TATPKEAKEAMR 137
Query: 169 KDQMEHTE-ILKMRGLPFSVKKSEIVQFF 196
K T ++K+RGLP++V + +I +FF
Sbjct: 138 KISGHGTAFVVKLRGLPYAVTEQQIEEFF 166
>gi|301609832|ref|XP_002934459.1| PREDICTED: RNA-binding protein 12B-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 683
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V L GLP+ ++D+ +FF G ++VD+ V +NG G A+V F + AL RD +
Sbjct: 183 VFLYGLPYTAGELDVKEFFHGFNVVDLHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNE 242
Query: 120 NMGRRYVEVFRCKRQDYYNA----------VASEVNYEGIYDNDFHG---SPPPSRAKRY 166
+G RY+ V C Q + A V + + + H SP R +
Sbjct: 243 YIGHRYICVKLCNEQKWIEAGGPTDERNESVRKNRQWSPRFPSKNHSRSRSPKIHRTRSR 302
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ +Q + +L M +SV+K++I FF D I + +I + +G T E +V +
Sbjct: 303 SPHNQQFYLHLLNM---SYSVQKTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKN 359
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP-STPDEARRAESRSRQ 265
+ ++ + K + R V ++P + D ES RQ
Sbjct: 360 EKFYQKCLGLHKGLLNGREVWVYPIARKDMLELIESSERQ 399
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP DI FF+GL I D + G+ GEAF++FA A+ R
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHITGGKI-GEAFIIFATDEDARRAMSRSGG 86
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN------------ 167
+ + +E+F + + + + E+N +G D P P +K N
Sbjct: 87 FIKKSRIELFLSSKAEMQHTL--EMNRKGNKD----LGPTPDISKLLNVMKKGIYQKNMA 140
Query: 168 ---------DKDQMEHTE-------------ILKMR----------GLPFSVKKSEIVQF 195
D ++TE I ++ GLP++ + ++ +F
Sbjct: 141 NKSNVEAGFDSSGAKYTEENMPRPKYQGKKDIWPLKDNGYGYVFLYGLPYTAGELDVKEF 200
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
F + +++ +H + R +G G AYV+F SV++A+ A+ +D IG RY+
Sbjct: 201 FHGFNVVD--LHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYI 249
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ L + ++ DI FF DI D LL+++NG + E FV+ + L
Sbjct: 311 LHLLNMSYSVQKTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKNEKFYQKCLGLH 370
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ + R V V+ R+D + S + + + S PS K++ D+ ++
Sbjct: 371 KGLLNGREVWVYPIARKDMLELIESSERQQL----ERNTSEDPSPKKKFRDRSNLK--RY 424
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ +R PF+V KSE+ +FF + + E I + G GEA V F S +A
Sbjct: 425 MYLRNFPFNVSKSEVQKFFAGFPVDEQDIFLLYDSRGVGLGEALVTFPSEHQA 477
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP ++I FF I + +HI G GEA++ F + E+A+RAM +
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHIT----GGKIGEAFIIFATDEDARRAMSR 83
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + +R+
Sbjct: 84 SGGFIKKSRIELFLSSKAEMQHTLEMNRK 112
>gi|339253436|ref|XP_003371941.1| RNA-binding protein 35B [Trichinella spiralis]
gi|316967724|gb|EFV52114.1| RNA-binding protein 35B [Trichinella spiralis]
Length = 564
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFA 113
S V+R RGLP+ +D D+ +FF GL+I L ++ GR +GEA V F E A
Sbjct: 390 SSTVIRARGLPWQSSDQDVARFFVGLNIARGGVALCLSPQGRRNGEALVRFENAEHRELA 449
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
L+R R MG RY+EV+R +D+ N A + ++E
Sbjct: 450 LKRHRHFMGSRYIEVYRSTGEDFLNIAAVQYSFE 483
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 138 NAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFK 197
NA SE Y +N P +R +D +E + +++ RGLP+ ++ +FF
Sbjct: 364 NAAISEHTYTRTANN----LPLHTR------QDVVESSTVIRARGLPWQSSDQDVARFFV 413
Query: 198 DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
I + + P G+ GEA V F + E + A+ + + +GSRY+E++ ST ++
Sbjct: 414 GLNIARGGVALCLSPQGRRNGEALVRFENAEHRELALKRHRHFMGSRYIEVYRSTGED 471
>gi|194214277|ref|XP_001492007.2| PREDICTED: probable RNA-binding protein 19 [Equus caballus]
Length = 962
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 292 PTTPHTVKLRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKA 351
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K N +E PP + AK + + E
Sbjct: 352 LKCNREYMGGRYIEVFREK-----NIPTAE-------------GPPKNSAKPWQGRTLGE 393
Query: 174 HTE--------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ E L +R LP++ + E+ Q F Y + + + K G A+V F+
Sbjct: 394 NEEEEDLADSGRLFVRNLPYTSTEEELEQLFSRYGPLSELHYPIDGLTKKPKGFAFVTFM 453
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A RA + D R + + PST
Sbjct: 454 FPEHAVRAYAEVDGQVFQGRMLHVLPST 481
>gi|113931466|ref|NP_001039182.1| RNA binding motif protein 12B [Xenopus (Silurana) tropicalis]
gi|89271935|emb|CAJ81954.1| novel protein containing five RNA recognition motifs. (a.k.a. RRM,
RBD, or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 641
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 10/254 (3%)
Query: 6 GAILGSGGVSDGYEVGSKRQRMMEP-NPYFAVSSSASGFQPYGYG-GGFPPPPSFPVVRL 63
G L + V ++ QR +E N F+ +SASG Y + P V +
Sbjct: 61 GRPLKNSSVHLSISSQAEMQRALEEINSRFSSVNSASGNGTPSYKETSYFRKPDTLYVYV 120
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
G+P N T ++I FF GL + D + + +G +G A V F A++R Q MG
Sbjct: 121 HGMPLNTTKVEIKSFFVGLTVEDAIFLKYPSGLRNGNAIVKFTTSGDAHEAVKRSGQQMG 180
Query: 123 RRYVEVFRCKRQDYYN-----AVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
V + ++ A E++ E +D D S P SR + + + + E
Sbjct: 181 STPVSLMLSDEAEWIKVGGVRARKRELSPEVSFD-DRKKSVPHSRHELIKTRARSPYEER 239
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ + LP+ V K +I F + + + +I C GK T E +V+F S+ + + A +
Sbjct: 240 FVHLINLPYDVSKRDIKVHFGNLAMKDSQITFLCDWSGKRTREGFVKFTSINQYRDACAQ 299
Query: 237 DKMTIGSRYVELFP 250
+ SR V++ P
Sbjct: 300 HRKEFCSRLVDVLP 313
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 12/199 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V++L+GL IDI +FF+ LDI + G++ GEAF++F+ A+ +
Sbjct: 4 VIKLQGLSIEANSIDIRQFFSNLDIPKGYIYITGGKY-GEAFIIFSSYEDARRAISYSGR 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVN--YEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ V + + + A+ E+N + + +G+P + D T
Sbjct: 63 PLKNSSVHLSISSQAEMQRAL-EEINSRFSSVNSASGNGTPSYKETSYFRKPD----TLY 117
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + G+P + K EI FF +ED I + P G G A V+F + +A A+ +
Sbjct: 118 VYVHGMPLNTTKVEIKSFFVGL-TVEDAIFLKY-PSGLRNGNAIVKFTTSGDAHEAVKRS 175
Query: 238 KMTIGSRYVELFPSTPDEA 256
+GS V L S DEA
Sbjct: 176 GQQMGSTPVSLMLS--DEA 192
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L LP++ + DI F L + D L + +G+ + E FV F Q A +
Sbjct: 241 VHLINLPYDVSKRDIKVHFGNLAMKDSQITFLCDWSGKRTREGFVKFTSINQYRDACAQH 300
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA------KRYNDKDQ 171
R+ R V+V +D + +A G P R+ K+ + +
Sbjct: 301 RKEFCSRLVDVLPISERDMMDLIART------------GKKPRERSLRKDSPKKCSQESN 348
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA- 230
+ + + +R +V K +I FF + + E+ I + +G GEA V F + +EA
Sbjct: 349 LGKGKCIYLRNFASNVTKPDIQNFFSGFSLKEEDIFLLYDNNGIGLGEALVVFSTEKEAE 408
Query: 231 --KRAMCK 236
K+ CK
Sbjct: 409 STKKLHCK 416
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++GL +I QFF + I + I+I G GEA++ F S E+A+RA+
Sbjct: 4 VIKLQGLSIEANSIDIRQFFSNLDIPKGYIYIT----GGKYGEAFIIFSSYEDARRAISY 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
+ + V L S+ E +RA
Sbjct: 60 SGRPLKNSSVHLSISSQAEMQRA 82
>gi|39644691|gb|AAH04511.2| HNRPH3 protein, partial [Homo sapiens]
Length = 207
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 56 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 113
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 114 KDKNNMQHRYIELFLNSTP 132
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 58 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 117
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 118 NMQHRYIELF 127
>gi|349605437|gb|AEQ00674.1| Heteroproteinous nuclear ribonucleoprotein H3-like protein, partial
[Equus caballus]
Length = 200
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 49 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 106
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 107 KDKNNMQHRYIELFLNSTP 125
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 51 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 110
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 111 NMQHRYIELF 120
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 297 PTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKA 356
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
LQ +R+ MG RY+EVFR K A PP + K + + E
Sbjct: 357 LQCNREYMGGRYIEVFREKSIPTAKA------------------PPKNSTKAWQGRTLGE 398
Query: 174 HTE--------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
H E L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 399 HEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFM 458
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 459 FPEHAVKAYAEVDGQVFQGRMLHVLPST 486
>gi|332022470|gb|EGI62777.1| RNA-binding protein 12 [Acromyrmex echinatior]
Length = 883
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ L LP ++DI K F I D+ + N + G A+V FA
Sbjct: 555 ILLTDLPSFTKEMDIAKLFHDWKINDLFITNSKETGTIQYMAYVQFA------------- 601
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+E + + +V I + F ++AKR +++ M T+ +
Sbjct: 602 ------RLEDAKSSLSTPLKIGSKQVTATAISEEKF------AQAKREHEQASMNQTDCV 649
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
MRGLPF +I FF D I+ IH+ GK GE + EF S E+A+RA+ K+
Sbjct: 650 LMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAITKNG 709
Query: 239 MTIGSRY--VELFP 250
+ +G +EL P
Sbjct: 710 LPLGKNIPTIELVP 723
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 22/189 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P + T D+ F G+ I + ++N N G G A++ F E AL
Sbjct: 452 VEVRNMPLSATYADLRHAFHGIYIRKDGMKIINDNHGNRVGIAYIKFGKAEGKELALSTT 511
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV E I+D + P +R + D D I
Sbjct: 512 RYVRGSE-VEVLDLD--------------ESIFDKAVNSYSPENR-EDGTDGDVRNSMCI 555
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
L + LP K+ +I + F D+K I D + G AYV+F +E+AK ++
Sbjct: 556 L-LTDLPSFTKEMDIAKLFHDWK-INDLFITNSKETGTIQYMAYVQFARLEDAKSSLST- 612
Query: 238 KMTIGSRYV 246
+ IGS+ V
Sbjct: 613 PLKIGSKQV 621
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L + +PF +EI++FF D+ + + + G TG+A V F S EA+RA+
Sbjct: 808 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 865
>gi|119574671|gb|EAW54286.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_e
[Homo sapiens]
Length = 177
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 26 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 83
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 84 KDKNNMQHRYIELFLNSTP 102
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 28 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 87
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 88 NMQHRYIELF 97
>gi|5911913|emb|CAB55897.1| hypothetical protein [Homo sapiens]
gi|7739441|gb|AAF68848.1| hnRNP 2H9C [Homo sapiens]
gi|119574666|gb|EAW54281.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574669|gb|EAW54284.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574672|gb|EAW54287.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574673|gb|EAW54288.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|193787147|dbj|BAG52353.1| unnamed protein product [Homo sapiens]
Length = 215
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 64 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 121
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 122 KDKNNMQHRYIELFLNSTP 140
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 66 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 125
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 126 NMQHRYIELF 135
>gi|328717324|ref|XP_001952255.2| PREDICTED: hypothetical protein LOC100163028 [Acyrthosiphon pisum]
Length = 819
Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 37/216 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV--------LLVNKNGRFSGEAFVVFAGPIQVE 111
VVR+RGL ++ T I KF + V + GR +G+A+V ++
Sbjct: 563 VVRMRGLSWSATTDAIIKFLSTSGEAKVKDGASRVHFTMTTEGRPNGQAYVDMESEENLK 622
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL++D + M RY+ VF R + + +GS +
Sbjct: 623 AALKQDGEYMRDRYINVFPSNRSEMEQDIKE------------NGS-------------K 657
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +RGLPF K +IV+FF+ ++I + I I+ G+ A+V+FV+ E +
Sbjct: 658 LDSDNCVHIRGLPFDFTKDDIVEFFQGLEMIPNGITISNSSAGRIG--AFVQFVNRENVE 715
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRA--ESRSRQ 265
+A+ K I RY+E+F S+ E + R RQ
Sbjct: 716 KALKKHMKKIRQRYIEVFRSSLTEINNQALQRRPRQ 751
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +RGLPF+ T DI +FF GL+++ + + N + GR AFV F VE AL++
Sbjct: 664 VHIRGLPFDFTKDDIVEFFQGLEMIPNGITISNSSAGRIG--AFVQFVNRENVEKALKKH 721
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD 151
+ + +RY+EVFR + N + YD
Sbjct: 722 MKKIRQRYIEVFRSSLTEINNQALQRRPRQTPYD 755
>gi|442746051|gb|JAA65185.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 141
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 31/157 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFA--------GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE 111
V+R+RGLP++ T +I FF G+ V + L ++ GR SGEA++ VE
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTL-SREGRPSGEAYIELESEQDVE 65
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
LQR +++G RY+EVF+ KR + V G + D ND
Sbjct: 66 VGLQRHNEHIGHRYIEVFKSKRSEMDWVVKR----SGAHQQD-----------SLNDG-- 108
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
+++RGLPF K EI QFF +I+ + I +
Sbjct: 109 -----CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITL 140
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKI-IEDKI---HIACRPDGKATGEAYVEFVSVEEAKR 232
+L++RGLP+S K EI+ FF ++ I+ I H+ +G+ +GEAY+E S ++ +
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTLSREGRPSGEAYIELESEQDVEV 66
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
+ + IG RY+E+F S E RS
Sbjct: 67 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKRS 97
>gi|194379882|dbj|BAG58293.1| unnamed protein product [Homo sapiens]
Length = 238
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 87 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 144
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 145 KDKNNMQHRYIELFLNSTP 163
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L+ + V + + +GR +GEA V F A+ +D+
Sbjct: 89 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 148
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 149 NMQHRYIELF 158
>gi|7739445|gb|AAF68850.1|AF132362_1 hnRNP 2H9B [Homo sapiens]
gi|7739437|gb|AAF68844.1| hnRNP 2H9B [Homo sapiens]
Length = 297
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 146 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 203
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 204 KDKNNMQHRYIELFLNSTP 222
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 138 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 185
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 186 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 217
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
G++TGEA+V+F S E A+ A+ K K IG RY+E+F S+ E +
Sbjct: 5 GRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIK 48
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 90 VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
++ GR +GEAFV FA E AL + ++ +G RY+E+FR R +
Sbjct: 1 MDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSE 46
>gi|307179523|gb|EFN67837.1| RNA-binding protein 12 [Camponotus floridanus]
Length = 873
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ L LP ++DI K F I D+ + N ++G A+V FA
Sbjct: 545 ILLTELPSFTKEMDIAKLFHDWKINDLFITNTKESGTTQYMAYVQFA------------- 591
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+E + + +V I + F ++AKR +++ + T+ +
Sbjct: 592 ------RLEDAKSSLNTTLKIGSKQVTATAISEEKF------AQAKREHEQVSLNQTDCI 639
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
MRGLPF +I FF D I+ IH+ GK GE + EF S E+A+RA+ K+
Sbjct: 640 LMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAIAKNG 699
Query: 239 MTIGSRY--VELFP 250
+ +G +EL P
Sbjct: 700 LPLGKNVPTIELVP 713
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 33/193 (17%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P T D+ F G+ I + ++N N G G A++ F E AL
Sbjct: 445 VEVRNMPLTATYADLRHAFQGIYIRKDGMKIINDNHGNRVGIAYIKFGKAEGKEQAL--- 501
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNY----EGIYDNDFHGSPPPSRAKRYNDKDQME 173
G RYV SEV E I+D + P D +
Sbjct: 502 ---TGTRYVR-------------NSEVEVLHLDESIFDKAVNSYSPDKE-----DDGDLR 540
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++ + + LP K+ +I + F D+K I D + G AYV+F +E+AK +
Sbjct: 541 NSMCILLTELPSFTKEMDIAKLFHDWK-INDLFITNTKESGTTQYMAYVQFARLEDAKSS 599
Query: 234 MCKDKMTIGSRYV 246
+ + IGS+ V
Sbjct: 600 L-NTTLKIGSKQV 611
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L + +PF +EI++FF D+ + + + G TG+A V F S EA+RA+
Sbjct: 798 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 855
>gi|449284118|gb|EMC90699.1| RNA-binding protein 12B [Columba livia]
Length = 698
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPI 108
G P P + LRG+P++ T+ ++ FF+G+ + V+L+ ++NG +G+ V FA P
Sbjct: 165 GSHPFNPDDLYLYLRGIPYSATEDEVRAFFSGIHVDGVILIKHRNGLSNGDCLVKFATPG 224
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDYYN-----AVASEVNY----------EGIYDND 153
LQR RQ MG+R++E+ + + + +E+++ G +
Sbjct: 225 DALEGLQRHRQYMGQRFIEISPSTEERWIEYGGTVDMPNEMDHFLCEDRSPRSSGYMHSR 284
Query: 154 FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
H R +R + + +R L +V+K ++ FF D I +I +
Sbjct: 285 KHSHSRSPRRQRTRSRSPPTQEYYIHLRNLSTNVEKRDLRDFFPDLDICSKQIKLLTDKH 344
Query: 214 GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
+ T +A+V S + + A+ + + +R V +FP
Sbjct: 345 QRRTRDAFVLLRSERDYQAALECHRKVLLNRPVYIFP 381
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 7/183 (3%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQV 110
PP + LR L N D+ FF LDI LL +K+ R + +AFV+
Sbjct: 302 PPTQEYYIHLRNLSTNVEKRDLRDFFPDLDICSKQIKLLTDKHQRRTRDAFVLLRSERDY 361
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
+ AL+ R+ + R V +F ++ + S D D G P + R
Sbjct: 362 QAALECHRKVLLNRPVYIFPISKKSMLKIIDS-CERRRSQDRDHPGQAIPEKGYREGHSG 420
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ +R PF V K E+ +FF + I ED I++ C G GEA V+F S E+A
Sbjct: 421 P---KTCVYVRNFPFDVSKIEVQKFFVRFDIDEDDIYLLCDDKGVGLGEALVKFKSEEQA 477
Query: 231 KRA 233
+A
Sbjct: 478 MKA 480
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 58/248 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVF--------------- 104
V+RL+GLP DI +FF GL+I D + G GEAF++F
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHIIGGEI-GEAFIIFATDEDARRAMSCSGG 62
Query: 105 -----------AGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASE---------- 143
+ +++ ++ R+ GR E+ R+ N +
Sbjct: 63 FIKDSRIELFLSSKAEMQNTIEMSRRQFGRGGREMMSGSRRTGTNGSGASGVGDFPHVVP 122
Query: 144 VNYEGIYDND----------FH---------GSPPPSRAKRYNDKDQMEHTEILKMRGLP 184
V +G+ D FH G P S R L +RG+P
Sbjct: 123 VFPKGMSKPDYGPPNHPEAGFHTNGTRHGDMGMPKSSYQSRKGSHPFNPDDLYLYLRGIP 182
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR 244
+S + E+ FF + D + + +G + G+ V+F + +A + + + +G R
Sbjct: 183 YSATEDEVRAFFSGIHV--DGVILIKHRNGLSNGDCLVKFATPGDALEGLQRHRQYMGQR 240
Query: 245 YVELFPST 252
++E+ PST
Sbjct: 241 FIEISPST 248
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP ++I +FF I + +HI G GEA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + SR+
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSRR 88
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
EH ++++ LPF +EI+ FF Y++I + + + G +G+A + + EEA
Sbjct: 619 EHGVPIRLKNLPFKATPNEILDFFYGYRVIPESVCVQYNKQGLPSGDAIIAMTNYEEAMA 678
Query: 233 AMCK-DKMTIGSRYVEL 248
A+ + + IG R V+L
Sbjct: 679 AINELNDRPIGPRKVKL 695
>gi|226487868|emb|CAX75599.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HIACRPDGKATGEAYVE 223
Y+D Q ++MRGLP+S K +I +F + + ++ + A RP TGEA V+
Sbjct: 110 YDDHPQSSTGHSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRP----TGEAIVD 165
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELF-PSTPD 254
F S +EAK AM KD+ IGSRY+ELF STP+
Sbjct: 166 FASHDEAKEAMKKDREKIGSRYIELFLASTPN 197
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ T DI +F A L V++ + N R +GEA V FA + + A+++DR+
Sbjct: 122 VRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDRE 181
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 182 KIGSRYIELF 191
>gi|226487878|emb|CAX75604.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HIACRPDGKATGEAYVE 223
Y+D Q ++MRGLP+S K +I +F + + ++ + A RP TGEA V+
Sbjct: 110 YDDHPQSSTGHSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRP----TGEAIVD 165
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELF-PSTPD 254
F S +EAK AM KD+ IGSRY+ELF STP+
Sbjct: 166 FASHDEAKEAMKKDREKIGSRYIELFLASTPN 197
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ T DI +F A L V++ + N R +GEA V FA + + A+++DR+
Sbjct: 122 VRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDRE 181
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 182 KIGSRYIELF 191
>gi|344252227|gb|EGW08331.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 185
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 44 HRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 101
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
VEF + EEA AM KD+ + RY+ELF ++ A S+
Sbjct: 102 DVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQ 145
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 60 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 119
Query: 119 QNMGRRYVEVF 129
NM RY+E+F
Sbjct: 120 ANMQHRYIELF 130
>gi|76155975|gb|AAX27224.2| SJCHGC06533 protein [Schistosoma japonicum]
Length = 249
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI--HIACRPDGKATGEAYVE 223
Y+D Q ++MRGLP+S K +I +F + + ++ + A RP TGEA V+
Sbjct: 67 YDDHPQSSTGHSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRP----TGEAIVD 122
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELF-PSTPD 254
F S +EAK AM KD+ IGSRY+ELF STP+
Sbjct: 123 FASHDEAKEAMKKDREKIGSRYIELFLASTPN 154
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
VR+RGLP++ T DI +F A L V++ + N R +GEA V FA + + A+++DR+
Sbjct: 79 VRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDRE 138
Query: 120 NMGRRYVEVF 129
+G RY+E+F
Sbjct: 139 KIGSRYIELF 148
>gi|301779826|ref|XP_002925333.1| PREDICTED: probable RNA-binding protein 19-like [Ailuropoda
melanoleuca]
Length = 963
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ + +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 292 PTTPYTVKLRGAPFNVTEKSVTEFLAPLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQA 351
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ R+ MG RY+EVFR K N ++ PP + AK + + E
Sbjct: 352 LKCHREYMGGRYIEVFREK-----NVTTAK-------------GPPKNSAKPWQGRTLGE 393
Query: 174 HTEI--------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ E L +R LP++ + ++ Q F + + + + K G A+V F+
Sbjct: 394 NEEEEDLADSGRLFIRNLPYTSTEEDLEQLFSKFGPLSELHYPIDSLTKKPKGFAFVTFM 453
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A RA + D R + + PST
Sbjct: 454 FPEHAVRAYAEVDGQVFQGRMLHVLPST 481
>gi|18605870|gb|AAH23162.1| Hnrpf protein, partial [Mus musculus]
Length = 188
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 47 HRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 104
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
VEF + EEA AM KD+ + RY+ELF ++ A S+
Sbjct: 105 DVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQ 148
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 64 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 123
Query: 120 NMGRRYVEVF 129
NM RY+E+F
Sbjct: 124 NMQHRYIELF 133
>gi|296480483|tpg|DAA22598.1| TPA: mCG11326-like [Bos taurus]
Length = 290
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 139 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 196
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 197 KDKNNMQHRYIELFLNSTP 215
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 131 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 178
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 179 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 210
>gi|156402343|ref|XP_001639550.1| predicted protein [Nematostella vectensis]
gi|156226679|gb|EDO47487.1| predicted protein [Nematostella vectensis]
Length = 862
Score = 70.1 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 54 PPPSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVE 111
P P+ P ++RGLPF D I +FF+ L V + V NK G+ SG AFV F+ +E
Sbjct: 247 PKPTTPWTCKMRGLPFKAKDKHILEFFSPLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLE 306
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
AL+R++ + RY+E+F+ +D +DN+ G S ++ +K
Sbjct: 307 KALKRNKDYLQGRYIELFKDTNRD--------------FDNNKQGDGEKSWMRKLQEKGD 352
Query: 172 MEHTEI------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
E E L +R L +S + +I F+ + + + + K G +V F+
Sbjct: 353 DEEEEPIGESGRLFLRNLAYSCSEEDIQHLFEKFGPLSEVNLPLDKHTNKTIGIGFVTFL 412
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
E A +A + D R + + P+ +A++ ES +
Sbjct: 413 MPEHAVKAFNELDGTVFQGRLLHILPA---KAKKEESNDNE 450
>gi|322790727|gb|EFZ15471.1| hypothetical protein SINV_06272 [Solenopsis invicta]
Length = 933
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ L LP ++DI K F I D+ + N + G A+V FA
Sbjct: 601 ILLTDLPSFTKEMDIAKLFHDWKINDLFITNSKETGTTQYMAYVQFA------------- 647
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+E + + +V I + F ++AKR +++ + T+ +
Sbjct: 648 ------RLEDAKSSLSTPLKIGSKQVTATAISEEKF------AQAKREHEQASINQTDCI 695
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
MRGLPF +I FF D I+ IH+ GK GE + EF S E+A+RA+ K+
Sbjct: 696 LMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAITKNG 755
Query: 239 MTIGSRY--VELFP 250
+ +G +EL P
Sbjct: 756 LPLGKNIPTIELVP 769
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 21/189 (11%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P + T D+ F G+ I + ++N N G G A++ F E AL
Sbjct: 497 VEVRNMPLSATYADLRHAFHGIYIRKDGMKIINDNHGNRVGMAYIKFGKSEGKELALSTT 556
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV E I+D + P +R + D I
Sbjct: 557 RYVRGSE-VEVLDLD--------------ESIFDKAVNSYSPENREDGIDGGDVRNSMCI 601
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
L + LP K+ +I + F D+K I D + G AYV+F +E+AK ++
Sbjct: 602 L-LTDLPSFTKEMDIAKLFHDWK-INDLFITNSKETGTTQYMAYVQFARLEDAKSSLST- 658
Query: 238 KMTIGSRYV 246
+ IGS+ V
Sbjct: 659 PLKIGSKQV 667
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L + +PF +EI++FF D+ + + + G TG+A V F S EA+RA+
Sbjct: 858 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 915
>gi|74214262|dbj|BAE40375.1| unnamed protein product [Mus musculus]
Length = 512
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDY 136
+ +MG RY+EV++ +++
Sbjct: 308 HKHHMGVRYIEVYKATGEEF 327
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
>gi|417409638|gb|JAA51317.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 315
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 164 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 221
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 222 KDKNNMQHRYIELFLNSTP 240
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 156 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 203
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 204 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 235
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 75 ICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
IC + GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+FR
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 132 KRQD 135
R +
Sbjct: 61 SRSE 64
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
I + + +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 252 TPDEAR 257
+ E +
Sbjct: 61 SRSEIK 66
>gi|417409472|gb|JAA51238.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 300
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 149 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 206
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 207 KDKNNMQHRYIELFLNSTP 225
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 141 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 188
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 189 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 220
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 75 ICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131
IC + GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+FR
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 132 KRQD 135
R +
Sbjct: 61 SRSE 64
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
I + + +I+ + I + G++TGEA+V+F S E A++A+ K K IG RY+E+F S
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 252 TPDEAR 257
+ E +
Sbjct: 61 SRSEIK 66
>gi|94536671|ref|NP_001035439.1| uncharacterized protein LOC678601 [Danio rerio]
gi|92096562|gb|AAI15345.1| Zgc:136953 [Danio rerio]
gi|190338538|gb|AAI63730.1| Zgc:136953 [Danio rerio]
Length = 209
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 167 NDKDQMEHT-EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
ND + H+ + MRGLPF +S++ FF + ++HI P+GK+TGEA VEF
Sbjct: 93 NDSNSGFHSGHFVHMRGLPFRATESDVAHFFGPLTPV--RVHIDMGPNGKSTGEADVEFR 150
Query: 226 SVEEAKRAMCKDKMTIGSRYVELF 249
S E+A AM KDK + RY+ELF
Sbjct: 151 SHEDAVSAMSKDKNHMQHRYIELF 174
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ D+ FF L V V + + NG+ +GEA V F A+ +D+
Sbjct: 105 VHMRGLPFRATESDVAHFFGPLTPVRVHIDMGPNGKSTGEADVEFRSHEDAVSAMSKDKN 164
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 165 HMQHRYIELF 174
>gi|358342654|dbj|GAA27695.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 295
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
L++ GLPFSV K++I FF+ ++I++D I + G+ TGEA+V+FVS E A+ A K
Sbjct: 15 LRLFGLPFSVTKAQIQAFFEGFEIVKDGIGLLTDHHGRPTGEAFVQFVSPEVARLAAGKH 74
Query: 238 KMTIGSRYVELFPSTPDEARRAESR 262
K I RYVE+ ST A +A R
Sbjct: 75 KHLIDGRYVEISFSTLKAANQAIER 99
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLPF+ ++I+ FF+ + + + + +GK G A V F +VE+ K AM +
Sbjct: 220 IRMRGLPFAATVNDILDFFRPIQPL--TVTMRTHKNGKPNGMADVYFATVEDTKEAMKRH 277
Query: 238 KMTIGSRYVELFPS 251
K +G RY+ELF S
Sbjct: 278 KAPMGFRYIELFSS 291
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+RL GLPF+ T I FF G +IV LL + +GR +GEAFV F P A +
Sbjct: 14 TLRLFGLPFSVTKAQIQAFFEGFEIVKDGIGLLTDHHGRPTGEAFVQFVSPEVARLAAGK 73
Query: 117 DRQNMGRRYVEV 128
+ + RYVE+
Sbjct: 74 HKHLIDGRYVEI 85
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+R+RGLPF T DI FF + + V + +KNG+ +G A V FA + A++R +
Sbjct: 220 IRMRGLPFAATVNDILDFFRPIQPLTVTMRTHKNGKPNGMADVYFATVEDTKEAMKRHKA 279
Query: 120 NMGRRYVEVF 129
MG RY+E+F
Sbjct: 280 PMGFRYIELF 289
>gi|428180638|gb|EKX49505.1| hypothetical protein GUITHDRAFT_105029 [Guillardia theta CCMP2712]
Length = 374
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
+K+RGLPF +++ F K Y +E I DG+ +GEA+V F +EEAKR +
Sbjct: 287 TVKLRGLPFGATSLDVMGFLKGYNAVESSIRFGNNQDGRPSGEAWVSFNRLEEAKRVVRE 346
Query: 236 KDKMTIGSRYVELF 249
KD+ +G+RYVELF
Sbjct: 347 KDRHHLGNRYVELF 360
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL---VNKNGRFSGEAFVVFAGPIQVEFAL-Q 115
V+LRGLPF T +D+ F G + V+ + N++GR SGEA+V F + + + +
Sbjct: 287 TVKLRGLPFGATSLDVMGFLKGYNAVESSIRFGNNQDGRPSGEAWVSFNRLEEAKRVVRE 346
Query: 116 RDRQNMGRRYVEVF 129
+DR ++G RYVE+F
Sbjct: 347 KDRHHLGNRYVELF 360
>gi|344295376|ref|XP_003419388.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
19-like [Loxodonta africana]
Length = 1089
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNSHGNKTGYIFVDFSSEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQ- 171
L+ +R+ MG RY+EVFR K S +G HG+ P R N++++
Sbjct: 350 LKCNREYMGGRYIEVFREK---------SSPTAKGPLK---HGAKPWQGRTLGENEEEED 397
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + L +R LP++ + E+ + F Y + + + K G A++ F+ E A
Sbjct: 398 LADSGRLFVRNLPYTSTEEELEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 232 RAMCK-DKMTIGSRYVELFPST 252
+A + D R + + PST
Sbjct: 458 KAYAEVDGQVFQGRMLHVLPST 479
>gi|224046497|ref|XP_002200032.1| PREDICTED: RNA-binding protein 12B isoform 1 [Taeniopygia guttata]
gi|449494411|ref|XP_004175301.1| PREDICTED: RNA-binding protein 12B isoform 2 [Taeniopygia guttata]
Length = 699
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 18/205 (8%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
LRG+P++ T++++ F +G+ + V+L+ ++NG +G+ + A P L+R RQ M
Sbjct: 178 LRGIPYSATEVEVRAFLSGIRVDGVILIKHRNGLNNGDCLIKCATPSDALEGLKRHRQYM 237
Query: 122 GRRYVEV--------FRCKRQ-------DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRY 166
G+R++E+ C Q D++ G + H R +R
Sbjct: 238 GQRFIEISPTTEERWIECGGQIDMPDEMDHFLCEDHSPRSSGYVHSRKHSHSRSPRRQRT 297
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ + + +R L F+V+K ++ FF + I +I I K T +A+V +
Sbjct: 298 HSRSSPGQEYYIHLRNLCFNVEKRDLRDFFPELDIHSKQIKILTDKHQKRTRDAFVMLRN 357
Query: 227 VEEAKRAM-CKDKMTIGSRYVELFP 250
E + A+ C K+ I +R V +FP
Sbjct: 358 EREYQAALECHRKVLI-NRPVYIFP 381
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ LR L FN D+ FF LDI +L +K+ + + +AFV+ + + AL+
Sbjct: 309 IHLRNLCFNVEKRDLRDFFPELDIHSKQIKILTDKHQKRTRDAFVMLRNEREYQAALECH 368
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R+ + R V +F R+ + S + D D G ++ R +
Sbjct: 369 RKVLINRPVYIFPISRKSMLKIIDSCERKRSL-DRDHLGQAISEKSYR---EGHSSPRNC 424
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ +R PF V K E+ +FF + I ED I++ G GEA V+F S E+A +A +
Sbjct: 425 VYVRNFPFDVSKIEVRKFFARFDIDEDDIYLLYDEKGVGLGEALVKFKSEEQAMKAENLN 484
Query: 238 KMT 240
+ T
Sbjct: 485 RQT 487
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I +FF I + +HI G GEA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPVVAGPPDIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + SR+
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSRK 88
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+ ++ LPF +EI+ FF Y++I + + + G +G+A V + EEA A+ +
Sbjct: 625 ILLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMAAINEL 684
Query: 237 DKMTIGSRYVEL 248
+ IG R V+L
Sbjct: 685 NDRPIGPRKVKL 696
>gi|84043632|ref|XP_951606.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma brucei
TREU927]
gi|33348520|gb|AAQ15845.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62359177|gb|AAX79621.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei]
Length = 487
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV--LLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
V+RL GLP++ + I +FF + D ++ G G FV A+ R
Sbjct: 25 VLRLYGLPYSIKEEKIREFFGSFSLADEEPIVFFVEGLHRGTGFVRLRNAEDAALAINRL 84
Query: 117 DRQNMGR-RYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RQN+ RYVE+ ++ R + ++Q
Sbjct: 85 HRQNIDETRYVEISTSSEEE--------------------------RQRIMEQQEQSNKA 118
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF+ + ++ F + + + I I DG+ TG+A++E S E+ KR
Sbjct: 119 CVLRLRGLPFAATEDDVRTFIESMEGVL-SIDICRDMDGRNTGDAFIELASEEDVKRVKL 177
Query: 236 KDKMTIGSRYVELFPST 252
+G+RY+E+ PST
Sbjct: 178 LHSKAMGNRYIEVLPST 194
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG+P+S + I +FF KI +H+ + TGEA+VE + A+ +
Sbjct: 387 VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERNRLTGEAFVEVEDRNDVLLALDR 446
Query: 237 DKMTIGSRYVELFPSTPDEARR 258
+ +G+RY+E+F S+P +R
Sbjct: 447 NGAMMGTRYIEVFESSPAAMQR 468
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDI----VDVLLVNKNGRFSGEAFVVFAGPIQVE 111
PS VVR+RG+P++ ++ I +FFAG+ I V ++ +N R +GEAFV V
Sbjct: 383 PSPFVVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERN-RLTGEAFVEVEDRNDVL 441
Query: 112 FALQRDRQNMGRRYVEVF 129
AL R+ MG RY+EVF
Sbjct: 442 LALDRNGAMMGTRYIEVF 459
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 15/202 (7%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFA 113
P F VR+ GLPF + +I FF L +DV LL +K R SG AFV FA + + A
Sbjct: 424 PERFFTVRVLGLPFKAREPEIVGFFKPLKPIDVRLLFDKRKRSSGRAFVDFATKPEWKKA 483
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++ + MG+RY+EV + ++ E D+ P P R + D+D E
Sbjct: 484 LEKHKSKMGKRYIEVTAAIPERNIMQQIEKLEPEDKPKKDY---PAPLRPE---DEDIGE 537
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG---KATGEAYVEFVSVEEA 230
+ +R LP++ ++ E+ + F+ + + + +H+ DG K G A++ FV E A
Sbjct: 538 SGRLF-VRNLPYACREDELRELFEAFGPLSE-LHMPI--DGETKKPKGFAFITFVLPEHA 593
Query: 231 KRAMCK-DKMTIGSRYVELFPS 251
+A D R + + P+
Sbjct: 594 SQAFQNLDNTIFQGRLLHVLPA 615
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++ GLPF ++ EIV FFK K I+ ++ R +++G A+V+F + E K+A+ K
Sbjct: 429 TVRVLGLPFKAREPEIVGFFKPLKPIDVRLLFDKR--KRSSGRAFVDFATKPEWKKALEK 486
Query: 237 DKMTIGSRYVELFPSTPD 254
K +G RY+E+ + P+
Sbjct: 487 HKSKMGKRYIEVTAAIPE 504
>gi|444525890|gb|ELV14185.1| RNA-binding protein 12B [Tupaia chinensis]
Length = 1012
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAV--------ASEVNYEGIYDNDF----HGSPPPS 161
R MG R++EV + Q + NAV + E + +GI D F H P S
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIDLGGNAVKEGDVPVRSEEQSPKGINDRHFRKWSHSKSPRS 274
Query: 162 RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
R + ++ LP S+ K ++ FF+D + ++I + D + T A+
Sbjct: 275 TRSR------SPLGFYVHLKNLPLSINKRDLRNFFRDTDLANEQIRFLYK-DERRTRYAF 327
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
V F ++++ A+ K + R V + P
Sbjct: 328 VTFKTLKDYNTALSLHKTVLQYRPVHVDP 356
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ LP + D+ FF D+ + + + K+ R + AFV F AL +
Sbjct: 285 VHLKNLPLSINKRDLRNFFRDTDLANEQIRFLYKDERRTRYAFVTFKTLKDYNTALSLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V V R+ +A YE P ++Y+ ++ +
Sbjct: 345 TVLQYRPVHVDPVSRKQMLKFIAC---YEKKRPGSVEKERPGHLLQKYSQQNYSGQKLCI 401
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + E+ I++ G GEA V+F S E+A +A
Sbjct: 402 YIRNFPFDVTKVEVQKFFADFSLAEEDIYLLYDDKGVGLGEALVKFKSEEQAVKA 456
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 53/232 (22%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +D+ FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII---GGEVGEAFIIFATDEDARRAISRS 60
Query: 118 RQNMGRRYVEVFRCKR------------------------------QDYYNAVASEVNYE 147
+ VE+F + ++ A+ E +
Sbjct: 61 GGLIKNSSVELFLSSKAEMQKTIEMKRSGHIGRGRLGSGASGVGSLSNFIEAIKEETSNS 120
Query: 148 GI-----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 196
G D F HG P + + ++ L +RGLP+ V + ++ FF
Sbjct: 121 GYGPSINQDAGFHTNGTGHGDLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFF 175
Query: 197 KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 176 SGLCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+I+ D + I G TGEA V ++ EA A+
Sbjct: 938 IKIMNLPFKANVNEILDFFHGYRIVPDSVSIQYNDQGLPTGEAIVAMINYNEAMAAIKDL 997
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 998 NDRPVGPRKVKL 1009
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF ++ FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I + VELF S+ E ++
Sbjct: 60 SGGLIKNSSVELFLSSKAEMQKT 82
>gi|148701751|gb|EDL33698.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Mus
musculus]
Length = 311
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 113 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 170
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 171 DVEFATHEDAVAAMSKDKANMQHRYVELF 199
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 115 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 174
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 175 ATHEDAVAAMSKDKANMQHRYVELF 199
>gi|261326510|emb|CBH09471.1| heterogeneous nuclear ribonucleoprotein H/F,putative [Trypanosoma
brucei gambiense DAL972]
Length = 488
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV--LLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
V+RL GLP++ + I +FF + D ++ G G FV A+ R
Sbjct: 26 VLRLYGLPYSIKEEKIREFFGSFSLADEEPIVFFVEGLHRGTGFVRLRNAEDAALAINRL 85
Query: 117 DRQNMGR-RYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
RQN+ RYVE+ ++ R + ++Q
Sbjct: 86 HRQNIDETRYVEISTSSEEE--------------------------RQRIMEQQEQSNKV 119
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF+ + ++ F + + + I I DG+ TG+A++E S E+ KR
Sbjct: 120 CVLRLRGLPFAATEDDVRTFIESMEGVL-SIDICRDMDGRNTGDAFIELASEEDVKRVKL 178
Query: 236 KDKMTIGSRYVELFPST 252
+G+RY+E+ PST
Sbjct: 179 LHSKAMGNRYIEVLPST 195
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG+P+S + I +FF KI +H+ + TGEA+VE + A+ +
Sbjct: 388 VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERNRLTGEAFVEVEDRNDVLLALDR 447
Query: 237 DKMTIGSRYVELFPSTPDEARR 258
+ +G+RY+E+F S+P +R
Sbjct: 448 NGAMMGTRYIEVFESSPAAMQR 469
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDI----VDVLLVNKNGRFSGEAFVVFAGPIQVE 111
PS VVR+RG+P++ ++ I +FFAG+ I V ++ +N R +GEAFV V
Sbjct: 384 PSPFVVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERN-RLTGEAFVEVEDRNDVL 442
Query: 112 FALQRDRQNMGRRYVEVF 129
AL R+ MG RY+EVF
Sbjct: 443 LALDRNGAMMGTRYIEVF 460
>gi|148228969|ref|NP_001088073.1| RNA binding motif protein 19 [Xenopus laevis]
gi|52354760|gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
Length = 920
Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F L V + + N G +G FV + +V+ A
Sbjct: 275 PTTSYTVKLRGAPFNVTEQNVKEFLVPLKPVAIRIARNTYGNKTGYVFVDLSSEEEVQKA 334
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R++ MG RY+EVF R +Y + + + E P R K+ ++ +
Sbjct: 335 LKRNKDYMGGRYIEVF---RDNYTKSPSVQSKAE--------SRPWEQRDKQELQQEDLS 383
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKR 232
+ L +R LP+S + ++ + F Y I + IH K G A+V F+ E A +
Sbjct: 384 ESGRLFVRNLPYSCTEDDLDKLFSKYGPISE-IHFPIDSLTKKPKGFAFVTFLITEHAVK 442
Query: 233 AMCK-DKMTIGSRYVELFPSTPDEARRAES 261
A + D R + + PS + ES
Sbjct: 443 AYAEVDGQIFQGRLLHVLPSAAKKEEVNES 472
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG PF+V + + +F K + I IA G TG +V+ S EE ++A+ ++
Sbjct: 281 VKLRGAPFNVTEQNVKEFLVPLKPV--AIRIARNTYGNKTGYVFVDLSSEEEVQKALKRN 338
Query: 238 KMTIGSRYVELF----PSTPDEARRAESR 262
K +G RY+E+F +P +AESR
Sbjct: 339 KDYMGGRYIEVFRDNYTKSPSVQSKAESR 367
>gi|348551182|ref|XP_003461409.1| PREDICTED: probable RNA-binding protein 19-like [Cavia porcellus]
Length = 961
Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K+ A PP + +K + + E
Sbjct: 350 LKCNREYMGGRYIEVFREKQAPVAKA------------------PPKNSSKAWQGRTLGE 391
Query: 174 HTE--------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ E L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 392 NEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSAYGPLSELHYPIDTLTKKPKGFAFVTFL 451
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 452 FPEHAVKAYAEVDGQVFQGRMLHVLPST 479
>gi|148701753|gb|EDL33700.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Mus
musculus]
Length = 288
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 113 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 170
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 171 DVEFATHEDAVAAMSKDKANMQHRYVELF 199
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 115 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 174
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 175 ATHEDAVAAMSKDKANMQHRYVELF 199
>gi|383276062|dbj|BAM09220.1| heterogenous nuclear ribonucleoprotein F, partial [Ursus thibetanus
japonicus]
Length = 150
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D + Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 52 HRYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 109
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256
VEF + EEA AM KD+ + RY+ELF ++ A
Sbjct: 110 DVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 145
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 36 VSSSASGFQPYGYGGG--FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNK 92
+S SG + YG G + V +RGLP+ T+ DI FF+ L+ V V + +
Sbjct: 42 LSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGP 101
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
+GR +GEA V FA + A+ +DR NM RY+E+F
Sbjct: 102 DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 138
>gi|194389894|dbj|BAG60463.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 21 VHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 78
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 79 KANMQHRYVELF 90
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 6 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 65
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 66 ATHEDAVAAMSKDKANMQHRYVELF 90
>gi|74222440|dbj|BAE38120.1| unnamed protein product [Mus musculus]
Length = 272
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 97 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 154
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 155 DVEFATHEDAVAAMSKDKANMQHRYVELF 183
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 99 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 158
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 159 ATHEDAVAAMSKDKANMQHRYVELF 183
>gi|47218706|emb|CAG05678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 488
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 14/95 (14%)
Query: 177 ILKMRGLPFSVKKSEIVQFF--------------KDYKIIEDKIHIACRPDGKATGEAYV 222
L++RGLPF K EIVQFF + +I+ + I + G++TGEA+V
Sbjct: 20 TLRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNGITLPVDYQGRSTGEAFV 79
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+F S E A++A+ K K IG RY+E+F S+ +E R
Sbjct: 80 QFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIR 114
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 60 VVRLRGLPFNC--------------TDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFV 102
+RLRGLPF C T + +C + GL IV L V+ GR +GEAFV
Sbjct: 20 TLRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNGITLPVDYQGRSTGEAFV 79
Query: 103 VFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
FA E AL + ++ +G RY+E+F+ R +
Sbjct: 80 QFASKEIAEKALGKHKERIGHRYIEIFKSSRNE 112
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I +FF + ++HI P+GK+TGEA VEF S E+A AM
Sbjct: 360 HFVHMRGLPFRATENDIAKFFSPLNPL--RVHIDFAPNGKSTGEADVEFRSHEDAVAAMS 417
Query: 236 KDK 238
KDK
Sbjct: 418 KDK 420
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 40 ASGFQPYGYGG---GFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGR 95
ASG +GY G P S V +RGLPF T+ DI KFF+ L+ + V + NG+
Sbjct: 338 ASGMGGHGYSSQSDGGPGFHSGHFVHMRGLPFRATENDIAKFFSPLNPLRVHIDFAPNGK 397
Query: 96 FSGEAFVVFAGPIQVEFALQRDRQNMGR 123
+GEA V F A+ +D+ +M R
Sbjct: 398 STGEADVEFRSHEDAVAAMSKDKNHMRR 425
>gi|417409228|gb|JAA51131.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 271
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 96 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 153
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 154 DVEFATHEDAVAAMSKDKANMQHRYVELF 182
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 98 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 157
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 158 ATHEDAVAAMSKDKANMQHRYVELF 182
>gi|417409033|gb|JAA51043.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 251
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 96 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 153
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 154 DVEFATHEDAVAAMSKDKANMQHRYVELF 182
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 98 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 157
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 158 ATHEDAVAAMSKDKANMQHRYVELF 182
>gi|67971142|dbj|BAE01913.1| unnamed protein product [Macaca fascicularis]
Length = 286
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 111 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 168
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 169 DVEFATHEDAVAAMSKDKANMQHRYVELF 197
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 113 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 172
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 173 ATHEDAVAAMSKDKANMQHRYVELF 197
>gi|440804101|gb|ELR24980.1| Znfinger in Ran binding protein [Acanthamoeba castellanii str.
Neff]
Length = 732
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
E T+++ MRGLP+S +++ FF I+ IH+ G+ +G AYVEF S EE
Sbjct: 241 EETKVIVMRGLPWSATDADVGMFFSGLDIVPGGIHLIHDHTGRPSGVAYVEFSSAEEVNN 300
Query: 233 AMCKDKMTIGSRYVELFPS 251
A+ + IGSRY+E++PS
Sbjct: 301 ALQRHNGFIGSRYIEVYPS 319
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+ +RGLP++ TD D+ FF+GLDIV L+ + GR SG A+V F+ +V ALQR
Sbjct: 245 VIVMRGLPWSATDADVGMFFSGLDIVPGGIHLIHDHTGRPSGVAYVEFSSAEEVNNALQR 304
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEV 144
+G RY+EV+ +AS+
Sbjct: 305 HNGFIGSRYIEVYPSDANSLTAILASQA 332
>gi|349605885|gb|AEQ00971.1| Heteroproteinous nuclear ribonucleoprotein H2-like protein, partial
[Equus caballus]
Length = 270
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 95 HRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEA 152
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 153 DVEFATHEDAVAAMAKDKANMQHRYVELF 181
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 97 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 156
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 157 ATHEDAVAAMAKDKANMQHRYVELF 181
>gi|159164063|pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein F Homolog
Length = 118
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 78
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++DR++MG RY+EVF+ R +
Sbjct: 79 KKDRESMGHRYIEVFKSHRTE 99
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED--KIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 78
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ ++G RY+E+F S E
Sbjct: 79 KKDRESMGHRYIEVFKSHRTE 99
>gi|112491340|pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F
gi|297787485|pdb|2KFY|A Chain A, Nmr Structure Of The First Qrrm Of Hnrnp F In Complex With
Agggau G- Tract Rna
Length = 136
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 32 PYFAVSSSASGFQPYGYGGGFPPPPSFP--VVRLRGLPFNCTDIDICKFFAGLDIVD--- 86
P + +S +G Q G G P VV+LRGLP++C+ D+ F + I D
Sbjct: 16 PRGSHMASMTGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA 75
Query: 87 --VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
+ + GR SGEAFV V+ AL++DR++MG RY+EVF+ R +
Sbjct: 76 GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE 126
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S ++ F D I + +H +G+ +GEA+VE S ++ K A+
Sbjct: 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 105
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ ++G RY+E+F S E
Sbjct: 106 KKDRESMGHRYIEVFKSHRTE 126
>gi|112491343|pdb|2HGN|A Chain A, Nmr Structure Of The Third Qrrm Domain Of Human Hnrnp F
gi|297787489|pdb|2KG1|A Chain A, Structure Of The Third Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 139
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD
Sbjct: 49 VHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 106
Query: 238 KMTIGSRYVELFPSTPDEA 256
+ + RY+ELF ++ A
Sbjct: 107 RANMQHRYIELFLNSTTGA 125
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 49 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 108
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 109 NMQHRYIELFLNSTTGASNGAYSSQVMQGM 138
>gi|281343470|gb|EFB19054.1| hypothetical protein PANDA_014807 [Ailuropoda melanoleuca]
Length = 947
Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ + +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 280 PTTPYTVKLRGAPFNVTEKSVTEFLAPLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQA 339
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ R+ MG RY+EVFR K N ++ PP + AK + + E
Sbjct: 340 LKCHREYMGGRYIEVFREK-----NVTTAK-------------GPPKNSAKPWQGRTLGE 381
Query: 174 HTE--------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ E L +R LP++ + ++ Q F + + + + K G A+V F+
Sbjct: 382 NEEEEDLADSGRLFIRNLPYTSTEEDLEQLFSKFGPLSELHYPIDSLTKKPKGFAFVTFM 441
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A RA + D R + + PST
Sbjct: 442 FPEHAVRAYAEVDGQVFQGRMLHVLPST 469
>gi|159164103|pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Hypothetical Protein Flj201171
Length = 123
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEE 229
E+ I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E
Sbjct: 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEY 80
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
A+ A+ K K +G RY+ELF ST E ++ +R
Sbjct: 81 AQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 113
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84
Query: 114 LQRDRQNMGRRYVEVFR 130
L++ + +G+RY+E+FR
Sbjct: 85 LRKHKDLLGKRYIELFR 101
>gi|51476543|emb|CAH18256.1| hypothetical protein [Homo sapiens]
Length = 194
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 164 KRYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEA 220
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 96 HRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEA 153
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 154 DVEFATHEDAVAAMSKDKANMQHRYVELF 182
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 98 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 157
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 158 ATHEDAVAAMSKDKANMQHRYVELF 182
>gi|431914230|gb|ELK15488.1| Putative RNA-binding protein 19 [Pteropus alecto]
Length = 949
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
PS P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 294 PSTPHTVKLRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEEVKKA 353
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R MG RY+EVFR K N ++ PP + K + + E
Sbjct: 354 LKCNRDYMGGRYIEVFREK-----NVPTTK-------------GPPKNSTKAWQGRTLGE 395
Query: 174 HTEI--------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ E L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 396 NEEEEDLADSGRLFVRNLPYTSSEEDLEKIFSRYGPLSELHYPIDSLTKKPKGFAFVTFM 455
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 456 FPEHAVKAYAEVDGQVFQGRMLHVLPST 483
>gi|380806715|gb|AFE75233.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 112
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM
Sbjct: 25 HCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMS 82
Query: 236 KDKMTIGSRYVELF 249
KDK + RYVELF
Sbjct: 83 KDKANMQHRYVELF 96
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 12 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 71
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 72 ATHEDAVAAMSKDKANMQHRYVELF 96
>gi|340716874|ref|XP_003396916.1| PREDICTED: hypothetical protein LOC100648364 [Bombus terrestris]
Length = 885
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFAL 114
S + L LP ++DI K F I D+ + + ++G A+V FA
Sbjct: 552 SSACILLTDLPSFTKEMDIAKLFHDWKINDLFITSTKESGSVQCMAYVQFA--------- 602
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+E + V I ++ F ++AKR ++++ M
Sbjct: 603 ----------RIEDAKASVNTSLKIGNKPVTATAITEDKF------AQAKRDHEQNSMNQ 646
Query: 175 T---EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
T + + MRGLPF +I+ FF D I+ +IH+ +GK GE + EF + +EA
Sbjct: 647 TASSDCIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEAL 706
Query: 232 RAMCKDKMTIGSRY--VELFP 250
RA K+ + G +EL P
Sbjct: 707 RATAKNGLPFGKNVPTIELVP 727
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 41/215 (19%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ +RGLPF D DI FF+ + IV +L+N+NG+ +GE F F + A ++
Sbjct: 653 IIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAKN 712
Query: 118 RQNMGRRY--VEVF-RCKRQDYYNAVASEV------NYEGIYDNDFHGSPPPSRAKRYND 168
G+ +E+ R K + V ++ ++ + + S P + R+ +
Sbjct: 713 GLPFGKNVPTIELVPRAKMLETLGMVDPQIMETQQQHFPPLQEQRPRFSGPMNHLPRFGN 772
Query: 169 KD----------------------QMEHTE-------ILKMRGLPFSVKKSEIVQFFKDY 199
M++ E +L + +PF +EI++FF D+
Sbjct: 773 SGFGPRCPPGLMGIPRHMLGRHLGSMDYVEGFGKPGCVLSLENVPFKADINEIIEFFGDF 832
Query: 200 KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ + + G TG+A V F S EA+RA+
Sbjct: 833 DVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 867
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P + T D+ F G+ I + L+N N G G A+V F+ E AL
Sbjct: 450 VEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTT 509
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV + AV S SP R + + + + +
Sbjct: 510 RFVRGSE-VEVLHLDESIFDKAVDSY-------------SPEKERDRGEDGIEDVRSSAC 555
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + LP K+ +I + F D+K I D + + G AYV+F +E+AK A
Sbjct: 556 ILLTDLPSFTKEMDIAKLFHDWK-INDLFITSTKESGSVQCMAYVQFARIEDAK-ASVNT 613
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG++ V T D+ +A+ Q
Sbjct: 614 SLKIGNKPVTATAITEDKFAQAKRDHEQ 641
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
>gi|403281594|ref|XP_003932266.1| PREDICTED: probable RNA-binding protein 19 [Saimiri boliviensis
boliviensis]
Length = 960
Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 28/208 (13%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V V +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAVRIVRNAHGNKTGYIFVDFSNEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK---- 169
L+ +R+ MG RY+EVFR K N ++ PP + AK + +
Sbjct: 350 LKCNREYMGGRYIEVFREK-----NVPTTK-------------GPPKNSAKSWQGRMLGE 391
Query: 170 ----DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ + + L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 392 NEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFM 451
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 452 FPEHAVKAYSEVDGQVFQGRMLHVLPST 479
>gi|350396590|ref|XP_003484604.1| PREDICTED: hypothetical protein LOC100745803 [Bombus impatiens]
Length = 885
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFAL 114
S + L LP ++DI K F I D+ + + ++G A+V FA
Sbjct: 552 SSTCILLTDLPSFTKEMDIAKLFHDWKINDLFITSTKESGSVQCMAYVQFA--------- 602
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+E + V I ++ F ++AKR ++++ M
Sbjct: 603 ----------RIEDAKASVNTSLKIGNKPVTATAITEDKF------AQAKRDHEQNSMNQ 646
Query: 175 T---EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
T + + MRGLPF +I+ FF D I+ +IH+ +GK GE + EF + +EA
Sbjct: 647 TASSDCIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEAL 706
Query: 232 RAMCKDKMTIGSRY--VELFP 250
RA K+ + G +EL P
Sbjct: 707 RATAKNGLPFGKNVPTIELVP 727
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 41/215 (19%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ +RGLPF D DI FF+ + IV +L+N+NG+ +GE F F + A ++
Sbjct: 653 IIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAKN 712
Query: 118 RQNMGRRY--VEVF-RCKRQDYYNAVASEV------NYEGIYDNDFHGSPPPSRAKRYND 168
G+ +E+ R K + V ++ ++ + + S P + R+ +
Sbjct: 713 GLPFGKNVPTIELVPRAKMLETLGMVDPQIMETQQQHFPPLQEQRPRFSGPMNHLPRFGN 772
Query: 169 KD----------------------QMEHTE-------ILKMRGLPFSVKKSEIVQFFKDY 199
M++ E +L + +PF +EI++FF D+
Sbjct: 773 SGFGPRCPPGLMGIPRHMLGRHLGSMDYVEGFGKPGCVLSLENVPFKADINEIIEFFGDF 832
Query: 200 KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ + + G TG+A V F S EA+RA+
Sbjct: 833 DVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 867
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P + T D+ F G+ I + L+N N G G A+V F+ E AL
Sbjct: 450 VEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTT 509
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV + AV S SP R + + + + +
Sbjct: 510 RFVRGSE-VEVLHLDESIFDKAVDSY-------------SPEKERDRGEDGIEDVRSSTC 555
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + LP K+ +I + F D+K I D + + G AYV+F +E+AK A
Sbjct: 556 ILLTDLPSFTKEMDIAKLFHDWK-INDLFITSTKESGSVQCMAYVQFARIEDAK-ASVNT 613
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG++ V T D+ +A+ Q
Sbjct: 614 SLKIGNKPVTATAITEDKFAQAKRDHEQ 641
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
>gi|428180581|gb|EKX49448.1| hypothetical protein GUITHDRAFT_104977 [Guillardia theta CCMP2712]
Length = 443
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
T +K+RGLP+ ++++ FFK ++E+ I +G+ +GEA+V F +E+A++A+
Sbjct: 354 TTKVKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRIEDARKAV 413
Query: 235 -CKDKMTIGSRYVELF 249
KD+ +G RYVELF
Sbjct: 414 REKDRHHMGDRYVELF 429
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL---VNKNGRFSGEAFVVFAGPIQVEFAL-QR 116
V+LRGLP+ T D+ FF GL +++ + +N GR SGEA+V F A+ ++
Sbjct: 357 VKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRIEDARKAVREK 416
Query: 117 DRQNMGRRYVEVF 129
DR +MG RYVE+F
Sbjct: 417 DRHHMGDRYVELF 429
>gi|384253302|gb|EIE26777.1| hypothetical protein COCSUDRAFT_64653 [Coccomyxa subellipsoidea
C-169]
Length = 472
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR-AMC 235
+K+RG+PF++ K +I FF ++ EDK+ + PDG+ TGEAYVE R A+
Sbjct: 379 IKLRGIPFTITKPDICSFFSTCGQMSEDKVKLVVGPDGRPTGEAYVEISGAGAKLRLALA 438
Query: 236 KDK--MTIGSRYVELFPSTPDEARR 258
KD+ M SRY+E+F ST DE R
Sbjct: 439 KDRQIMPGSSRYIEIFTSTRDEVDR 463
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNKNGRFSGEAFVVFAGP-IQVEFALQ 115
++LRG+PF T DIC FF+ + L+V +GR +GEA+V +G ++ AL
Sbjct: 379 IKLRGIPFTITKPDICSFFSTCGQMSEDKVKLVVGPDGRPTGEAYVEISGAGAKLRLALA 438
Query: 116 RDRQNM--GRRYVEVFRCKRQD 135
+DRQ M RY+E+F R +
Sbjct: 439 KDRQIMPGSSRYIEIFTSTRDE 460
>gi|149412787|ref|XP_001509129.1| PREDICTED: RNA-binding protein 12B-like [Ornithorhynchus anatinus]
Length = 692
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 18/205 (8%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
L G+P++ T+ ++ FF+GL + V+L+ + NGR +G+ FV FA LQR R M
Sbjct: 167 LHGMPYSVTEGEVHAFFSGLRVDGVILLKHHNGRNNGDGFVKFATSHDALGGLQRHRHYM 226
Query: 122 GRRYVEVFRCKRQDYYNAVAS-EVNYEGIYDNDFHGSPPPS----RAKRYNDKDQME--- 173
G R+VE+ +Q + ++ E SPP R K+ +
Sbjct: 227 GPRFVEISPASQQQWVECGGGPDLEMEVGRIRSKERSPPRGMNDLRLKKRSRSRSPRRLR 286
Query: 174 --------HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
H + ++ L S +K +I FF++ + ++I + D K T A+V F
Sbjct: 287 TRSRSPRGHGFYVHLKNLSLSTEKKDIKAFFRNIDLTSNQIKFLYK-DQKRTRSAFVMFK 345
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFP 250
+ + A+C K + R V + P
Sbjct: 346 TPRDYNEALCLHKAVLRQRPVHIDP 370
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 47/237 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL+I D + G GEAF++FA A+
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDGGVHIIGGEI-GEAFIIFATDEDARRAMSCSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA---------------- 163
+ +E+F + + N + D G P
Sbjct: 63 FIKDSLIELFLSSKTEMQNTIEMSRKRFDRGGRDLAGCKRPGAGASGAAGLSSLSNLVEA 122
Query: 164 -KRYNDKDQMEHTEI---------------------------LKMRGLPFSVKKSEIVQF 195
K+ K +H E L + G+P+SV + E+ F
Sbjct: 123 IKKGMSKAGADHPEAGFHTNGTRHGDSGARKEARTFQSDDRYLFLHGMPYSVTEGEVHAF 182
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
F ++ D + + +G+ G+ +V+F + +A + + + +G R+VE+ P++
Sbjct: 183 FSGLRV--DGVILLKHHNGRNNGDGFVKFATSHDALGGLQRHRHYMGPRFVEISPAS 237
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + SR+
Sbjct: 60 SGGFIKDSLIELFLSSKTEMQNTIEMSRK 88
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 6/176 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + DI FF +D+ + + K+ + + AFV+F P AL +
Sbjct: 299 VHLKNLSLSTEKKDIKAFFRNIDLTSNQIKFLYKDQKRTRSAFVMFKTPRDYNEALCLHK 358
Query: 119 QNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ +R V + ++ + A E G D + PP + R +
Sbjct: 359 AVLRQRPVHIDPISKKTMLKFIDAYEGRGLGAADRE---RPPQAVPDRSYREGYPGPRLC 415
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF + + E+ +++ G GEA V F S +A A
Sbjct: 416 IYIRNFPFDVTKIEVQKFFAGFSVEEEDVYLLYDDKGVGLGEALVRFRSEGQALEA 471
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+R LPF +EI+ FF Y++I + + I G +G+A V +EA A+ +
Sbjct: 618 IKIRNLPFKATVNEILDFFHGYRVIPESVSIQLNEQGLPSGDAIVAMTDYDEAVAAVDEL 677
Query: 237 DKMTIGSRYVELF 249
+ +G R V+L
Sbjct: 678 NDRPVGPRKVKLI 690
>gi|380806713|gb|AFE75232.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 118
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM
Sbjct: 25 HCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEDAVAAMS 82
Query: 236 KDKMTIGSRYVELFPST 252
KDK + RYVELF ++
Sbjct: 83 KDKANMQHRYVELFLNS 99
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 12 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 71
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 72 ATHEDAVAAMSKDKANMQHRYVELF 96
>gi|28279187|gb|AAH45946.1| Zgc:56148 [Danio rerio]
Length = 314
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 40/233 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GL DI FF GL I D + G EAF++FA A+ R
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHIIGGELE-EAFIIFASDEDARRAMSRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA-----SEVNYEGIYDN---------------------- 152
+ V +F + + + + SE+ +Y
Sbjct: 63 CIKGSTVNLFLSSKSEMQSVLEESTRRSELKNRAMYKEPAKRASAEQGPLPFSKDTRPDV 122
Query: 153 ------DFHGSPPPS---RAKRYNDKDQMEHTEI-LKMRGLPFSVKKSEIVQFFKDYKII 202
+ G P S A+R D D E E+ LK+ G+PFS K + FF K+
Sbjct: 123 RRADHPEMRGRPASSTFSEARRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFAGLKV- 181
Query: 203 EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
D I P G +G + V F + E+A + +D+ +GSRY+++ T +E
Sbjct: 182 -DDILFLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEE 233
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++L G+PF+ T ++ FFAGL + D+L L N G FSG + V F L+RDRQ
Sbjct: 158 LKLTGMPFSATKDNVHNFFAGLKVDDILFLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQ 217
Query: 120 NMGRRYVEVFRCKRQDYY 137
MG RY+++ RC +++
Sbjct: 218 YMGSRYIQITRCTEEEWL 235
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GL + +I FF +I + +HI G EA++ F S E+A+RAM +
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 237 DKMTIGSRYVELFPSTPDE--------ARRAESRSR 264
I V LF S+ E RR+E ++R
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVLEESTRRSELKNR 95
>gi|194389792|dbj|BAG60412.1| unnamed protein product [Homo sapiens]
Length = 355
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 181 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 238
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 239 VEFATHEDAVAAMAKDKANMQHRYVELF 266
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAK--- 231
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S EE K
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 232 -RAMCKDKMTIGSRYVELFPSTPDEAR 257
+A+ K K IG RY+E+F S+ E R
Sbjct: 72 EKALKKHKERIGHRYIEIFKSSRAEVR 98
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 182 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 241
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 242 ATHEDAVAAMAKDKANMQHRYVELF 266
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QR----DRQNMGRRYVEVFRCKRQD 135
++ ++ +G RY+E+F+ R +
Sbjct: 72 EKALKKHKERIGHRYIEIFKSSRAE 96
>gi|402585392|gb|EJW79332.1| hypothetical protein WUBG_09760 [Wuchereria bancrofti]
Length = 236
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 25/195 (12%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKF----FAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQV 110
P +RLRGLPF + D+ F F GL+ + + NGR SGE +V V
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQVFFFGLNAKSITFTLTSNGRASGECYVELDDQEAV 62
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
+ A + DR + RY+EVF + + HG S D D
Sbjct: 63 KEAQKLDRNEINGRYIEVFSVSDAELLMMIR-------------HGVIKGSGG----DAD 105
Query: 171 QMEHTE-ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++++RGLP+S +I +FF ++ + I P G+ +GEA+V + E
Sbjct: 106 SRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVID--KEPGGRPSGEAFVRLATKEY 163
Query: 230 AKRAMCKDKMTIGSR 244
A+ A+ + K +GSR
Sbjct: 164 AELALERSKNYMGSR 178
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDR 118
VVRLRGLP++ T DI +FF+GL++ D ++ + GR SGEAFV A E AL+R +
Sbjct: 113 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 172
Query: 119 QNMG-RRYVEVF 129
MG R+ EVF
Sbjct: 173 NYMGSRKESEVF 184
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
T +++RGLPF+ K+ ++ F + + + I +G+A+GE YVE E K
Sbjct: 5 TNYIRLRGLPFAAKEQDVRDFLQVFFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKE 64
Query: 233 AMCKDKMTIGSRYVELFPSTPDE 255
A D+ I RY+E+F + E
Sbjct: 65 AQKLDRNEINGRYIEVFSVSDAE 87
>gi|159163284|pdb|1WEZ|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein H'
Length = 102
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 75
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 76 KANMQHRYVELF 87
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V FA A+ +D+
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 77
Query: 120 NMGRRYVEVF 129
NM RYVE+F
Sbjct: 78 NMQHRYVELF 87
>gi|194376648|dbj|BAG57470.1| unnamed protein product [Homo sapiens]
Length = 404
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 246 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 303
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 304 KANMQHRYVELF 315
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+++FF D KI I +G+ +GEA+VE S EE K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 235 CKDKMTIGSRYVELFPSTPDE 255
KD+ T+G RYVE+F S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCK 132
++DR+ MG RYVEVF+
Sbjct: 72 KKDRETMGHRYVEVFKSN 89
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 231 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 290
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 291 ATHEDAVAAMAKDKANMQHRYVELF 315
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R +
Sbjct: 97 TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 145
>gi|432106419|gb|ELK32212.1| RNA-binding protein 12B [Myotis davidii]
Length = 954
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 28/241 (11%)
Query: 33 YFAVSSSASGFQPYGYGGG-------FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV 85
Y + + +GF G G G P P + LRGLP+ + D+ FF+GL +
Sbjct: 122 YGSPMNQDAGFHANGTGHGDLRPRKTRPLKAVNPYLFLRGLPYVVNEDDVRVFFSGLCVD 181
Query: 86 DVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV 144
V+ L + +GR +G A V FA I L+ R MG R++EV + Q + + S V
Sbjct: 182 GVIFLKHDDGRNNGHAMVKFASCIDASGGLKCHRSYMGSRFIEVMQGSEQQWIDFGGSSV 241
Query: 145 NYEGIYDNDFHGSPPPSRAKRYNDKD--QMEHTE-------------ILKMRGLPFSVKK 189
I SPP + ND+ + H++ + ++ L S+ K
Sbjct: 242 TESDIPVRTEEHSPP----REINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSINK 297
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
++ FF+D + ++I + D + T A+V F ++++ A+ K + R V +
Sbjct: 298 RDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKTLKDYNSALGLHKTVLQYRPVLVD 356
Query: 250 P 250
P
Sbjct: 357 P 357
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNSALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V V R+ + YE +++Y+ + +
Sbjct: 346 TVLQYRPVLVDPISRKQMLKFIEY---YEKKRPASIEKEKLGRVSQKYSQEGYSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K+E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKAEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 43/228 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +D+ FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII---GGEMGEAFIIFATDEDARRAVSRS 60
Query: 118 RQNMGRRYVEVF-----------RCKRQDYY-----NAVASEV--------NYEGIYDND 153
+ VE+F KR D+ + AS V + + N
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKILEMKRTDHIGRERPGSGASRVGCLSNFVEDVKEEASNS 120
Query: 154 FHGSPPPSRAKRYNDKD-----QMEHTEILK-------MRGLPFSVKKSEIVQFFKDYKI 201
+GSP A + + + T LK +RGLP+ V + ++ FF +
Sbjct: 121 GYGSPMNQDAGFHANGTGHGDLRPRKTRPLKAVNPYLFLRGLPYVVNEDDVRVFFSGLCV 180
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
D + DG+ G A V+F S +A + + +GSR++E+
Sbjct: 181 --DGVIFLKHDDGRNNGHAMVKFASCIDASGGLKCHRSYMGSRFIEVM 226
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 880 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYTEQGLPTGEAIVAMINYNEAMAAIKDL 939
Query: 237 DKMTIGSRYVEL 248
+ +G R V L
Sbjct: 940 NDRPVGPRKVRL 951
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF ++ FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII----GGEMGEAFIIFATDEDARRAVSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARR 258
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQK 81
>gi|213514986|ref|NP_001135185.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
gi|209149642|gb|ACI32984.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
Length = 204
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF + +I FF + ++HI P+GK+TGEA VEF S E+A AM KD
Sbjct: 100 VHMRGLPFRATEGDIANFFSPLTPV--RVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKD 157
Query: 238 KMTIGSRYVELFPST 252
K + RY+ELF ++
Sbjct: 158 KNHMQHRYIELFLNS 172
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLPF T+ DI FF+ L V V + NG+ +GEA V F A+ +D+
Sbjct: 100 VHMRGLPFRATEGDIANFFSPLTPVRVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKDKN 159
Query: 120 NMGRRYVEVF 129
+M RY+E+F
Sbjct: 160 HMQHRYIELF 169
>gi|432094975|gb|ELK26383.1| Putative RNA-binding protein 19 [Myotis davidii]
Length = 966
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 29/208 (13%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
PS P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 296 PSTPHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKA 355
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK---- 169
L+ +R+ MG RY+EVFR K VA PP S +K + +
Sbjct: 356 LKCNREYMGGRYIEVFREKTV----PVAK--------------GPPKSSSKPWQGRTLGE 397
Query: 170 ----DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ + + L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 398 DEEEEDLADSGRLFVRNLPYTSTEEDLEKIFSKYGPLSELHYPIDSLTKKPKGFAFVSFM 457
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 458 FPEHAVKAYAEVDGQVFQGRMLHVLPST 485
>gi|148233440|ref|NP_001079497.1| uncharacterized protein LOC379184 [Xenopus laevis]
gi|27694912|gb|AAH43858.1| MGC53694 protein [Xenopus laevis]
gi|80477878|gb|AAI08882.1| MGC53694 protein [Xenopus laevis]
Length = 658
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 30 PNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-L 88
P P + + + GYG V L GLP+ + D+ +FF G D+ D+
Sbjct: 133 PRPKYQGNEGTMPLKENGYG----------YVFLNGLPYTADEHDVKEFFHGFDVEDINF 182
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYE 147
V +NG G+A+V FA + +L R ++ +G RY+ + + AV+ + E
Sbjct: 183 CVRQNGDKDGKAYVKFATFQDAKASLSRHKEYIGHRYIFLKLSNEHAWIEAVSKTNRREE 242
Query: 148 GIYDNDF---------------HGSPPPS--RAKRYNDKDQMEHTEILKMRGLPFSVKKS 190
+++N HGS P R + + +Q H +L M P+SV K
Sbjct: 243 SVHNNREWSPRFSSKNHSRSPGHGSRSPKMHRTRSRSPHNQQFHLHLLNM---PYSVDKK 299
Query: 191 EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
+I +F D I + ++ G T E +V + + ++ + K + R V ++P
Sbjct: 300 DIKLYFGDPDIPDSQVKFLLDRKGVRTREGFVSVKNEKFYQKCLGLHKGLLNGREVWVYP 359
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP ++I FF I E +HI G GEA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPLVAGSTDIRHFFSGLHIPEGGVHIT----GGKHGEAFIIFPTDEDARRAMSC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I ++LF S+ E + +R+
Sbjct: 60 SGGFIKKSQIDLFLSSKAEMQHTLEMNRK 88
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 9/183 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ L +P++ DI +F DI D L+++ G + E FV + L
Sbjct: 287 LHLLNMPYSVDKKDIKLYFGDPDIPDSQVKFLLDRKGVRTREGFVSVKNEKFYQKCLGLH 346
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ + R V V+ +D + S + N S P +++ D+
Sbjct: 347 KGLLNGREVWVYPIAGKDMSELIES-TERPQLERNTSEDSSPKRKSR-----DRSNLKRC 400
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ +R PF+V KSE+ +FF + + E I + G GEA V F S A A +
Sbjct: 401 MYLRNFPFNVGKSEVQKFFAGFPVDERDIFLLYDSRGVGLGEALVIFPSEHHAILAEGLN 460
Query: 238 KMT 240
+ T
Sbjct: 461 QQT 463
>gi|444727895|gb|ELW68371.1| Heterogeneous nuclear ribonucleoprotein H2 [Tupaia chinensis]
Length = 236
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM
Sbjct: 88 HCVHMRGLPYRATENDIYNFFLLLNPM--RVHIEIGPDGRVTGEADVEFDTHEDAVAAMA 145
Query: 236 KDKMTIGSRYVELFPST 252
KDK+ + RYVELF ++
Sbjct: 146 KDKVNMQHRYVELFLNS 162
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
+G GG + V +RGLP+ T+ DI FF L+ + V + + +GR +GEA V F
Sbjct: 75 HGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFLLLNPMRVHIEIGPDGRVTGEADVEF 134
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A+ +D+ NM RYVE+F
Sbjct: 135 DTHEDAVAAMAKDKVNMQHRYVELF 159
>gi|324501689|gb|ADY40749.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 152
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD--IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQR 116
VV+ RGLP++CT+ +I FF D IV + L N++ R SGEAFV F E+AL R
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 117 DRQNMGRRYVEVF 129
D+Q+MG+RY+EV+
Sbjct: 116 DKQHMGKRYIEVW 128
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFK--DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K RGLP+S + EI FF+ D I+ KI + D + +GEA+V F + E+ + A+
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIV--KITLTKNRDARPSGEAFVAFNNNEDYEYAL 113
Query: 235 CKDKMTIGSRYVELF 249
+DK +G RY+E++
Sbjct: 114 TRDKQHMGKRYIEVW 128
>gi|47226618|emb|CAG07777.1| unnamed protein product [Tetraodon nigroviridis]
Length = 183
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+V+++GLP++CT D+ KFF+ I D L VN+ GR SG AF+ V AL
Sbjct: 7 IVQVKGLPWSCTADDLLKFFSECRIRDGVKGIHLTVNRMGRPSGRAFIEMEHEEDVNKAL 66
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ RQ +G RYVE SPP + + Y E
Sbjct: 67 EKHRQYLGPRYVEGL---------------------------SPPKAASTCY----MYEV 95
Query: 175 TEILKMRGLPFSVKKSEIVQ-----FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
TE R +KK+ Q FF + K+ I PDG+ +GEA V F ++
Sbjct: 96 TE----RDAEAIIKKAAEAQADDGVFFSPLPV--SKMLIEFGPDGRPSGEADVYFTRHQD 149
Query: 230 AKRAMCKDKMTIGSRYVELFPSTP 253
A AM +D+ IG P++P
Sbjct: 150 AVAAMSRDRQHIGQTDGPAKPASP 173
>gi|307197792|gb|EFN78921.1| RNA-binding protein 12 [Harpegnathos saltator]
Length = 885
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ L LP ++DI K F I D+ + N + G A+V FA
Sbjct: 554 ILLTDLPSFTKEMDIAKLFHDWKINDLFITNSKEGGTTQYMAYVQFA------------- 600
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT--- 175
+E + V I ++ F S+AKR +++ M T
Sbjct: 601 ------RLEDAKSSITASLKIGNKPVTATAISEDAF------SQAKREHEQASMNQTTSS 648
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ + MRGLPF +I+ FF D I+ +IH+ +GK GE + EF + +EA RA
Sbjct: 649 DCIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMMLNQNGKPAGECFCEFDTTDEALRATA 708
Query: 236 KDKMTIGSRY--VELFP 250
K+ + G +EL P
Sbjct: 709 KNGLPFGKNVPTMELVP 725
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P N T D+ F G+ I + ++N N G G A+V F E AL
Sbjct: 449 VEIRNMPLNATYSDLRHAFQGIYIRKDGMKIINDNHGNRVGIAYVKFGKAEGKELALSTT 508
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV E I+D + P N + + ++
Sbjct: 509 RYVRGSE-VEVLHLD--------------ESIFDKTVNSYSPDKERSEENAESDLRNSTC 553
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG-EAYVEFVSVEEAKRAMCK 236
+ + LP K+ +I + F D+KI + + I +G T AYV+F +E+AK ++
Sbjct: 554 ILLTDLPSFTKEMDIAKLFHDWKI--NDLFITNSKEGGTTQYMAYVQFARLEDAKSSITA 611
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG++ V + D +A+ Q
Sbjct: 612 -SLKIGNKPVTATAISEDAFSQAKREHEQ 639
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L + +PF +EI+ FF D+ + D + G TG+A V F S EA+RA+
Sbjct: 810 VLSLENVPFKADVNEIIDFFGDFDVKRDDVIRRYNDRGMPTGDARVAFASPSEAQRAL 867
>gi|334327209|ref|XP_001378263.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Monodelphis domestica]
Length = 231
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLP+ V +++I FF + + + I I PDG+ TGE VEF + E+A AM
Sbjct: 91 HCVHMRGLPYRVTENDIYNFFSPFNPVREHIEIG--PDGRVTGEVDVEFATHEDAVAAMS 148
Query: 236 KDKMTIGSRYVELF 249
KDK + RYV+LF
Sbjct: 149 KDKANMQHRYVKLF 162
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLVNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ + V + + + +GR +GE V F
Sbjct: 78 YGDGGSTFQRTTDHCVHMRGLPYRVTENDIYNFFSPFNPVREHIEIGPDGRVTGEVDVEF 137
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYV++F
Sbjct: 138 ATHEDAVAAMSKDKANMQHRYVKLF 162
>gi|351713473|gb|EHB16392.1| RNA-binding protein 12B [Heterocephalus glaber]
Length = 959
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + V I SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIECGGDAVKKGEIPMRAEEHSPPRGLNDRHFRKRTHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L +V K ++ FF+D + ++I + D K T A+V F +
Sbjct: 275 RTRSRSPVGFYVHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYK-DEKRTRYAFVTFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R + + P
Sbjct: 334 LKDYNTALGFHKTVLQHRPIHIDP 357
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N + D+ FF +D+ + + + K+ + + AFV F AL +
Sbjct: 286 VHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKRTRYAFVTFKTLKDYNTALGFHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYE-----GIYDNDFHGSPPPSRAKRYNDKDQME 173
+ R + + ++ + YE G D + G +++Y+ +
Sbjct: 346 TVLQHRPIHIDPVSKKQMLKFIEC---YEKKRPGGSIDKERSGH----VSQKYSQEGYSG 398
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 399 QKLCIYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 458
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 45/228 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +DI FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII---GGDIGEAFIIFATDEDARRAISRS 60
Query: 118 RQNMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYE 147
+ VE+F KR D Y A+ + N
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRIDRIGRGRPGSGASGVGSLSNYIEAMKEDENNS 120
Query: 148 GI-----YDNDFH--GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK 200
G D FH G+ R + E+ + +RGLP+ V + ++ FF
Sbjct: 121 GYGSSVNQDAGFHTNGTGLDDLRPRKTRPSKAENPYLF-LRGLPYLVNEDDVRVFFSGLC 179
Query: 201 IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 180 V--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 885 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 944
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 945 NDRPVGPRKVKL 956
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|51593298|gb|AAH80741.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
RGLP+ D D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R MG
Sbjct: 159 RGLPYLVNDDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG 218
Query: 123 RRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQME 173
R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 219 SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPRA 275
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + ++ L + K ++ F+D + D+I + D + T A+V F + +
Sbjct: 276 RSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQK 334
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
+ A+ K + R V + P + E R
Sbjct: 335 DYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNDDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD-- 237
+ LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 762 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAV-KDLS 820
Query: 238 KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 GRPVGPRKVKL 831
>gi|327282636|ref|XP_003226048.1| PREDICTED: probable RNA-binding protein 19-like isoform 2 [Anolis
carolinensis]
Length = 938
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 29/213 (13%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPI 108
GG P + V+LRG PFN T+ ++ +F L V + +V N +G +G FV F
Sbjct: 283 GGANEPTTSYTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNKTGYVFVDFNNEE 342
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS----RAK 164
+V+ AL+R+ + MG RY+E+F YE S P+ R K
Sbjct: 343 EVQKALKRNHEYMGGRYIELF----------------YEEHSKKTKPSSKDPARTWQRTK 386
Query: 165 RYNDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG---KATGEA 220
+ +++D+ + + L +R LP++ + ++ + F Y + + IH DG K G A
Sbjct: 387 KVDEEDEDLSDSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE-IHFPI--DGLTKKPKGFA 443
Query: 221 YVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252
+V ++ E A +A + D R + + PST
Sbjct: 444 FVTYMFPEHAVKAFAEVDGQVFQGRMLHVLPST 476
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG PF+V + + +F + + I I G TG +V+F + EE ++A+ ++
Sbjct: 294 VKLRGAPFNVTEQNVREFLVPLRPV--AIRIVRNAHGNKTGYVFVDFNNEEEVQKALKRN 351
Query: 238 KMTIGSRYVELF---------PSTPDEAR 257
+G RY+ELF PS+ D AR
Sbjct: 352 HEYMGGRYIELFYEEHSKKTKPSSKDPAR 380
>gi|56753603|gb|AAW25004.1| SJCHGC02919 protein [Schistosoma japonicum]
gi|226487876|emb|CAX75603.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 137
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 66/144 (45%), Gaps = 28/144 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ E A+
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++MGRRY+EVF ++ NA+ GS P S R EH
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAM---------------GSRPFSSPNR------REH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFKD 198
++++RGLP+ +K EI FF D
Sbjct: 103 --VVRLRGLPYDTEKKEIYAFFND 124
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPFS +I+ FFKD I K I+ P+G++ GEA++E S ++ ++AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 235 CKDKMTIGSRYVELFPSTPDEARRA 259
+G RY+E+F S +E A
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNA 88
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 17/211 (8%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F L V + + N G +G FV +V+ A
Sbjct: 275 PTTSYTVKLRGAPFNVTEQNVREFLVPLKPVAIRIARNTYGNKTGYVFVDLNSEEEVQKA 334
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R++ MG RY+EVFR D Y S P R K+ ++ +
Sbjct: 335 LKRNKDYMGGRYIEVFR----DNYTKSPS-------VPQKTQSRPWEQRDKQEELQEDVS 383
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKR 232
+ L +R LP++ + ++ + F Y I + IH K G A+V F+ E A +
Sbjct: 384 ESGRLFVRNLPYTCNEDDLEKLFSKYGPISE-IHFPIDSLTKKPKGFAFVTFLITEHAVK 442
Query: 233 AMCK-DKMTIGSRYVELFPSTP--DEARRAE 260
A + D R + + PS DE +E
Sbjct: 443 AYAEVDGQIFQGRMLHVLPSAAKKDEVNESE 473
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+K+RG PF+V + + +F K + I IA G TG +V+ S EE ++A+ +
Sbjct: 280 TVKLRGAPFNVTEQNVREFLVPLKPV--AIRIARNTYGNKTGYVFVDLNSEEEVQKALKR 337
Query: 237 DKMTIGSRYVELF-------PSTPD--EARRAESRSRQ 265
+K +G RY+E+F PS P ++R E R +Q
Sbjct: 338 NKDYMGGRYIEVFRDNYTKSPSVPQKTQSRPWEQRDKQ 375
>gi|431917851|gb|ELK17082.1| RNA-binding protein 12B [Pteropus alecto]
Length = 965
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 33 YFAVSSSASGFQPYGYGGG-------FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV 85
Y + + SGF G G G P P + LRGLP+ + D+ FF+GL +
Sbjct: 162 YGSPINQDSGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNENDVRVFFSGLCVD 221
Query: 86 DVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV 144
V+ L + +GR +G+A V FA I L+ R MG R++EV + Q + S +
Sbjct: 222 GVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGSAI 281
Query: 145 N-------------YEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSE 191
G+ D F +R + + + ++ L S+ K +
Sbjct: 282 KEGDIPLRTEEHSPLRGVNDRHFRKRSHSKSPRRTRSRSPLGF--YVHLKNLSLSINKRD 339
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251
+ FFKD + ++I + D + T A+V F ++++ A+ K + R V + P
Sbjct: 340 LKNFFKDTDLTNEQIRFLYK-DERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPVLVDPV 398
Query: 252 T 252
+
Sbjct: 399 S 399
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 42/226 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +DI FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII---GGDVGEAFIIFATDEDARRAISRS 101
Query: 118 RQNMGRRYVEVF-----------RCKRQDYY---------NAVASEVNY-EGIY--DNDF 154
+ VE+F KR D + V N+ EGI N
Sbjct: 102 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGVGCLSNFVEGIKAASNSG 161
Query: 155 HGSPPPSRAKRYNDKD-----QMEHTEILK-------MRGLPFSVKKSEIVQFFKDYKII 202
+GSP + + + + T LK +RGLP+ V ++++ FF +
Sbjct: 162 YGSPINQDSGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNENDVRVFFSGLCV- 220
Query: 203 EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 221 -DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 265
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 326 VHLKNLSLSINKRDLKNFFKDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 385
Query: 119 QNMGRRYVEVFRCKRQDYYNAVAS-EVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R V V R+ + E + + G ++ Y+ +
Sbjct: 386 TVLQYRPVLVDPVSRKQMLKFIECYEKKRPASIEKERLGHVSQKYSQGYSGQKL-----C 440
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 441 IYIRNFPFDVTKVEVQKFFADFSLEEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 496
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 891 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 950
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 951 NDRPVGPRKVKL 962
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDVGEAFIIFATDEDARRAISR 100
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 101 SGGFIKDSSVELFLSSKAEMQKT 123
>gi|148231978|ref|NP_001083138.1| RNA binding motif protein 12B [Xenopus laevis]
gi|37805207|gb|AAH60345.1| MGC68792 protein [Xenopus laevis]
Length = 654
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 49/235 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP DI FF+GL I D + G+++ EAF++FA A++
Sbjct: 4 VIRLQGLPVTAGSNDIRHFFSGLHIPDGGVHITGGKYA-EAFIIFATDEDARRAMRCSGG 62
Query: 120 NMGRRYVEVFRCKRQD--------------------------------YYNAVASEVNYE 147
+ + +E+F + + Y VAS+ N E
Sbjct: 63 FIKKSQIELFLSSKAEMQHTLEMNRKGNKDLGPSPNISKLLNVINKGIYQKNVASKSNVE 122
Query: 148 GIYDNDFHGSPPPSRAK-----RYNDKDQMEHTE-----ILKMRGLPFSVKKSEIVQFFK 197
D GS + K +Y K + + + + GLP+S + ++ FF
Sbjct: 123 AGSD----GSGAKHKEKNVPRPKYQGKKETRPIKDNSYGYVFLCGLPYSTSELDVKDFFH 178
Query: 198 DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
+ +++ +H + R +G G AYV+F SV++AK ++ +D IG R + + ST
Sbjct: 179 GFHVVD--VHFSVRSNGARDGNAYVKFASVQDAKASLSRDYEYIGHRRIAVKLST 231
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 18/224 (8%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S+ V L GLP++ +++D+ FF G +VDV V NG G A+V FA + +L
Sbjct: 155 SYGYVFLCGLPYSTSELDVKDFFHGFHVVDVHFSVRSNGARDGNAYVKFASVQDAKASLS 214
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVA-SEVNYEGIYDNDFHGS------------PPPSR 162
RD + +G R + V + A ++ E + S P R
Sbjct: 215 RDYEYIGHRRIAVKLSTEHKWIEAGGPTDEMQESAHKTRERSSRFSSKNHSSSRSPKTHR 274
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYV 222
+ + +Q + +L M +SV++ +I FF D I + +I +G T E ++
Sbjct: 275 TRSRSPHNQQFYLHLLNM---SYSVERRDIKLFFGDPDIPDSQIKFLLDRNGDRTREGFM 331
Query: 223 EFVSVEEAKRAMCKDKMTIGSRYVELFP-STPDEARRAESRSRQ 265
+ + ++ + K + V ++P + D ES RQ
Sbjct: 332 LVKNEKFYQKCLGLHKGLLNGCEVWVYPIARKDMLELIESTERQ 375
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ L + ++ DI FF DI D L+++NG + E F++ + L
Sbjct: 287 LHLLNMSYSVERRDIKLFFGDPDIPDSQIKFLLDRNGDRTREGFMLVKNEKFYQKCLGLH 346
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ + V V+ R+D + S + + + P R R D+
Sbjct: 347 KGLLNGCEVWVYPIARKDMLELIESTERQQ--LERNTKEDPFQKRKSR----DRSNLKRC 400
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ +R PF+V KSE+ +FF +++ E I + G GEA V F S +A
Sbjct: 401 MHLRNFPFNVNKSEVQKFFAGFQVDERDIFLLYDSIGVGLGEALVIFPSEHQA 453
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP + ++I FF I + +HI G EA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPVTAGSNDIRHFFSGLHIPDGGVHIT----GGKYAEAFIIFATDEDARRAMRC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + +R+
Sbjct: 60 SGGFIKKSQIELFLSSKAEMQHTLEMNRK 88
>gi|326674797|ref|XP_003200207.1| PREDICTED: RNA-binding protein 12B-A [Danio rerio]
Length = 685
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++L G+PF+ T ++ FFAGL + D+L L N G FSG + V F L+RDRQ
Sbjct: 158 LKLTGMPFSATKDNVHNFFAGLKVDDILFLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQ 217
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEG--IYDNDFHGSPPPSRA------KRYNDKDQ 171
MG RY+++ RC +++ EG I D P R +
Sbjct: 218 YMGSRYIQITRCTEEEWLK--------EGGLIVAADMRKRTPVERVRSRSPISYRSRSRS 269
Query: 172 MEHTEILKM-RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
H E M LP V+K ++ F + + +D+I I + A V F S+ +
Sbjct: 270 PSHEEYCIMFENLPPLVEKRDVRVFLQPVALKDDQIIIFSSKKDDKSKSAVVVFRSLTDY 329
Query: 231 KRAMCKDKMTIGSRYVELFP 250
+ +K + ++ V + P
Sbjct: 330 CAGLAHNKEMMYNKVVYVSP 349
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 100 AFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP 159
A VVF L +++ M + V V ++ + S ++ G + S
Sbjct: 319 AVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKMVTMLESSIDARG-EEKGSRRSAE 377
Query: 160 PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE 219
S+++R Q+ L +R LPF V+K EI+ FF Y + ED++ + G GE
Sbjct: 378 ASQSQRNTPDSQLR---CLYVRNLPFDVRKVEIMDFFHGYALTEDRVILLRDERGAGLGE 434
Query: 220 AYVEFVSVEEA 230
A V F + +EA
Sbjct: 435 ALVIFQTEKEA 445
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GL + +I FF +I + +HI G EA++ F S E+A+RAM +
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 237 DKMTIGSRYVELFPSTPDE--------ARRAESRSR 264
I V LF S+ E RR+E ++R
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVLEESTRRSEFKNR 95
>gi|327282634|ref|XP_003226047.1| PREDICTED: probable RNA-binding protein 19-like isoform 1 [Anolis
carolinensis]
Length = 945
Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 29/213 (13%)
Query: 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPI 108
GG P + V+LRG PFN T+ ++ +F L V + +V N +G +G FV F
Sbjct: 283 GGANEPTTSYTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNKTGYVFVDFNNEE 342
Query: 109 QVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS----RAK 164
+V+ AL+R+ + MG RY+E+F YE S P+ R K
Sbjct: 343 EVQKALKRNHEYMGGRYIELF----------------YEEHSKKTKPSSKDPARTWQRTK 386
Query: 165 RYNDKDQ-MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG---KATGEA 220
+ +++D+ + + L +R LP++ + ++ + F Y + + IH DG K G A
Sbjct: 387 KVDEEDEDLSDSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE-IHFPI--DGLTKKPKGFA 443
Query: 221 YVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252
+V ++ E A +A + D R + + PST
Sbjct: 444 FVTYMFPEHAVKAFAEVDGQVFQGRMLHVLPST 476
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG PF+V + + +F + + I I G TG +V+F + EE ++A+ ++
Sbjct: 294 VKLRGAPFNVTEQNVREFLVPLRPV--AIRIVRNAHGNKTGYVFVDFNNEEEVQKALKRN 351
Query: 238 KMTIGSRYVELF---------PSTPDEAR 257
+G RY+ELF PS+ D AR
Sbjct: 352 HEYMGGRYIELFYEEHSKKTKPSSKDPAR 380
>gi|321446634|gb|EFX60905.1| hypothetical protein DAPPUDRAFT_122743 [Daphnia pulex]
Length = 169
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
++ MRGLPF+ S+I+QFF + ++ D I I DG+ +GEA V F + EA+RA+
Sbjct: 93 LVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEAVVNFPNRAEAERAIA 152
Query: 236 -KDKMTIGSRYVELF 249
K++ IG+RY+ELF
Sbjct: 153 EKNRQNIGTRYIELF 167
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV--DVLLVNKN--GRFSGEAFVVFAGPIQVEFAL- 114
+V +RGLPF + DI +FF+G + D + +++N GR SGEA V F + E A+
Sbjct: 93 LVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEAVVNFPNRAEAERAIA 152
Query: 115 QRDRQNMGRRYVEVF 129
+++RQN+G RY+E+F
Sbjct: 153 EKNRQNIGTRYIELF 167
>gi|301762464|ref|XP_002916650.1| PREDICTED: RNA-binding protein 12B-like [Ailuropoda melanoleuca]
gi|281349037|gb|EFB24621.1| hypothetical protein PANDA_004747 [Ailuropoda melanoleuca]
Length = 985
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAVASEVNY----------EGIYDNDFHGSPPPSRA 163
R MG R++EV + Q + NAV EV+ GI D F
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAV-KEVDIPMRTEEHSPPRGINDRHFRKRSHSKSP 273
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
+R + + + ++ L S+ K ++ FF+D + ++I + D + T A+V
Sbjct: 274 RRTRSRSPLGF--YVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVT 330
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFP 250
F ++++ A+ K + R V + P
Sbjct: 331 FKTLKDYNTALGLHKTVLQYRPVHIDP 357
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + AV E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGAGSLSNFVEAVKEETSNSGY 122
Query: 150 -----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D F HG P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVTFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + ++ + YE +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPVSKKQMLKFIEC---YEKKRPVSVEKERLGHISQKYSQEGYPGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F + E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKTEEQAVKA 457
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y++I D + I G TGEA V ++ EA A+
Sbjct: 911 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 970
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 971 NDRPVGPRKVKL 982
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|255077464|ref|XP_002502372.1| predicted protein [Micromonas sp. RCC299]
gi|226517637|gb|ACO63630.1| predicted protein [Micromonas sp. RCC299]
Length = 202
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK--RAM 234
IL++R +P+ K+++V FF + EDK+ I + +TGEA+VEF S ++A +A+
Sbjct: 111 ILRLRSVPYEATKTDVVNFFYGMGVTEDKVKIVLDANSASTGEAFVEF-SGDDANISQAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEARR 258
KD+ +GSR VE+F S+ +E +R
Sbjct: 170 MKDRAVLGSRCVEMFRSSLEEVQR 193
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAG-PIQVEFALQ 115
++RLR +P+ T D+ FF G+ + + ++++ N +GEAFV F+G + AL
Sbjct: 111 ILRLRSVPYEATKTDVVNFFYGMGVTEDKVKIVLDANSASTGEAFVEFSGDDANISQALM 170
Query: 116 RDRQNMGRRYVEVFR 130
+DR +G R VE+FR
Sbjct: 171 KDRAVLGSRCVEMFR 185
>gi|417405465|gb|JAA49443.1| Putative rna-binding protein rrm superfamily [Desmodus rotundus]
Length = 968
Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L + +V N +G +G FV F+ +V+ A
Sbjct: 292 PTTPHTVKLRGAPFNVTEKNVLEFLAPLKPAAIRIVRNAHGNKTGYVFVDFSSEEEVKKA 351
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR E N I S P + + + ++ E
Sbjct: 352 LKCNREYMGGRYIEVFR------------EQNVP-IAKGTLKTSAKPWQGRTLGENEEEE 398
Query: 174 ---HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+ L +R LP++ + ++ Q F + + + + K G A+V F+ E A
Sbjct: 399 DLADSGRLFVRNLPYTSTEEDLEQLFSKFGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 458
Query: 231 KRAMCK-DKMTIGSRYVELFPST 252
+A + D R + + PST
Sbjct: 459 VKAYAEVDGQVFQGRMLHVLPST 481
>gi|345793203|ref|XP_544177.3| PREDICTED: RNA-binding protein 12B [Canis lupus familiaris]
Length = 994
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAVASEVNY----------EGIYDNDFHGSPPPSRA 163
R MG R++EV + Q + NAV EV+ GI D F
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAV-KEVDIPMRTEEHSPPRGINDRHFRKRSHSKSP 273
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
+R + + + ++ L S+ K ++ FF+D + ++I + D + T A+V
Sbjct: 274 RRTRSRSPLGF--YVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVM 330
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFP 250
F ++++ A+ K + R V + P
Sbjct: 331 FKTLKDYNSALGLHKTVLQYRPVHIDP 357
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV--------------------ASEVNY-EGIYD---NDFH 155
+ VE+F + + + S N+ E I + N +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMRRTDRIGRERPGSGASGAGSLSNFVEAIKEEASNSGY 122
Query: 156 GSPPPSRAKRYNDKD-----QMEHTEILK-------MRGLPFSVKKSEIVQFFKDYKIIE 203
GSP A + + + T LK +RGLP+ V + ++ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNSALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIEC---YEKKRPVSVEKERLGHVSQKYSQEGYPGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F + E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFSLGEDDIYLLYDDKGVGLGEALVKFKTEEQAVKA 457
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+I+ D + I G TGEA V ++ EA A+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 979
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 980 NDRPVGPRKVKL 991
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|226487872|emb|CAX75601.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 153
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 28/143 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVR+RGLPF+ DI FF I NGR +GEAF+ E A+
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++MGRRY+EVF ++ NA+ S + ++ ++ EH
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAMGS---------------------RPFSSPNRREH 102
Query: 175 TEILKMRGLPFSVKKSEIVQFFK 197
++++RGLP+ +K EI FF+
Sbjct: 103 --VVRLRGLPYDTEKKEIYAFFQ 123
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLPFS +I+ FFKD I K I+ P+G++ GEA++E S ++ ++AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 235 CKDKMTIGSRYVELFPSTPDEARRA 259
+G RY+E+F S +E A
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNA 88
>gi|226487874|emb|CAX75602.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 150
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 41/157 (26%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL------------------VNKNGRFSGEAF 101
VVR+RGLPF+ DI FF G + V NGR +GEAF
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 102 VVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS 161
+ E A+ ++MGRRY+EVF ++ NA+ GS P S
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDSCSEELNNAM---------------GSRPFS 108
Query: 162 RAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
R EH ++++RGLP+ +K EI FF D
Sbjct: 109 SPNR------REH--VVRLRGLPYDTEKKEIYAFFND 137
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKD-------YKIIED--------KIHIACRPDGKATGEAY 221
++++RGLPFS +I+ FFK + + D I+ P+G++ GEA+
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRA 259
+E S ++ ++AM +G RY+E+F S +E A
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDSCSEELNNA 101
>gi|71896463|ref|NP_001026115.1| RNA-binding protein 12B [Gallus gallus]
gi|53136630|emb|CAG32644.1| hypothetical protein RCJMB04_31o3 [Gallus gallus]
Length = 698
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 18/231 (7%)
Query: 36 VSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNG 94
V SG+Q F P + + LRG+P++ T+ + F +G+ + V+L+ ++NG
Sbjct: 153 VGMPKSGYQSRKDSHAFNPDDLY--LFLRGIPYSATEDAVRDFLSGIRVDGVILIKHRNG 210
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQ---------------DYYNA 139
+G V FA P L+R RQ MG+R++E+ + D++
Sbjct: 211 LNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEISPTTEERWIEYGGRVDMPNEMDHFLC 270
Query: 140 VASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY 199
G H R +R + + +R L +V+K ++ +FF D
Sbjct: 271 KEHSPRSSGYMHARKHSHSRSPRRQRTRSQSPSGQEYYIHLRNLSTNVEKRDLREFFPDL 330
Query: 200 KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
I +I I + T +A+V + + + A+ + + +R V +FP
Sbjct: 331 DISNKQIKILSEKHQRRTRDAFVMLKNERDYQAALECHRKVLLNRSVYIFP 381
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ LR L N D+ +FF LDI + +L K+ R + +AFV+ + AL+
Sbjct: 309 IHLRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLKNERDYQAALECH 368
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R+ + R V +F R+ + S YE + G P + +K E
Sbjct: 369 RKVLLNRSVYIFPISRKSMLKMLDS---YERKRSQE-RGHP----GQAITEKSYREGHSG 420
Query: 178 LKM----RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
LKM R PF V K E+ +FF+ + I ED I++ G GEA V+F S E+A +A
Sbjct: 421 LKMCAYVRNFPFDVTKVEVQRFFERFDIDEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 480
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP ++I +FF I + +HI G GEA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEMGEAFIIFATDEDARRAMSC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + SR+
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSRK 88
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
++++ LPF +EI+ FF Y++I + + + G +G+A V + EEA A+ +
Sbjct: 624 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 683
Query: 237 DKMTIGSRYVEL 248
+ IG R V+L
Sbjct: 684 NDRPIGPRKVKL 695
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP DI +FF GL+I D + G GEAF++FA A+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHIIGGEM-GEAFIIFATDEDARRAMSCSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ +E+F + + N +
Sbjct: 63 FIKDSRIELFLSSKAEMQNTI 83
>gi|326917887|ref|XP_003205226.1| PREDICTED: RNA-binding protein 12B-like [Meleagris gallopavo]
Length = 671
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 18/231 (7%)
Query: 36 VSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNG 94
V SG+Q F P + + LRG+P++ T+ + F +G+ + V+L+ ++NG
Sbjct: 153 VGMPKSGYQSRKDSHAFNPDDLY--LFLRGIPYSATEDAVRDFLSGIRVDGVILIKHRNG 210
Query: 95 RFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQ---------------DYYNA 139
+G V FA P L+R RQ MG+R++E+ + D++
Sbjct: 211 LNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEISPTTEERWIEYGGRVDMPNEMDHFFC 270
Query: 140 VASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY 199
G H R +R + + +R L +V+K ++ +FF D
Sbjct: 271 KEHSPRSSGYMHARKHSHSRSPRRQRTRSRSPSGQEYYIHLRNLSTNVEKRDLREFFPDL 330
Query: 200 KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
I +I I + T +A+V + + + A+ + + +R V +FP
Sbjct: 331 DISNKQIKILSEKHQRRTRDAFVMLRNERDYQAALECHRKVLLNRSVYIFP 381
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+ LR L N D+ +FF LDI + +L K+ R + +AFV+ + AL+
Sbjct: 309 IHLRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLRNERDYQAALECH 368
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R+ + R V +F R+ + S YE + P +A +K E
Sbjct: 369 RKVLLNRSVYIFPISRKSMLKMLDS---YERKRSQE---RAHPGQA--ITEKSYREGHSG 420
Query: 178 LKM----RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
LK+ R PF V K E+ +FF+ + I ED I++ G GEA V+F S E+A +A
Sbjct: 421 LKICAYVRNFPFDVTKVEVRRFFERFDIDEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 480
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP ++I +FF I + +HI G GEA++ F + E+A+RAM
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I +ELF S+ E + SR+
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSRK 88
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
++++ LPF +EI+ FF Y++I + + + G +G+A V + EEA A+ +
Sbjct: 597 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 656
Query: 237 DKMTIGSRYVEL 248
+ IG R V+L
Sbjct: 657 NDRPIGPRKVKL 668
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP DI +FF GL+I D + G GEAF++FA A+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHIIGGEI-GEAFIIFATDEDARRAMSCSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ +E+F + + N +
Sbjct: 63 FIKDSRIELFLSSKAEMQNTI 83
>gi|390468249|ref|XP_002753088.2| PREDICTED: probable RNA-binding protein 19 [Callithrix jacchus]
Length = 1066
Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 396 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKKA 455
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K + +G+ N + ++D E
Sbjct: 456 LKCNREYMGGRYIEVFREK---------NVTTTKGLPKNSAKSWQGRMLGENEEEEDLAE 506
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LP++ + ++ + F Y + + + K G A+V F+ E A +A
Sbjct: 507 SGRLF-VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 565
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 566 YSEVDGQVFQGRMLHVLPST 585
>gi|440906208|gb|ELR56498.1| Putative RNA-binding protein 19 [Bos grunniens mutus]
Length = 947
Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L + +V N +G +G FV F+ +V A
Sbjct: 293 PTTPHTVKLRGAPFNVTEKNVMEFLAPLKPAAIRVVRNAHGNKTGYVFVDFSSEEEVRKA 352
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPS--RAKRYNDKDQ 171
L+ +R+ MG RY+EVFR + N A++ + +G+ P + +++
Sbjct: 353 LKCNREYMGGRYIEVFRER-----NVPAAKAPLK-------NGAKPWQGWTLGEHEEEED 400
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + L +R LP++ + ++ + F Y + + + K G A+V F+ E A
Sbjct: 401 LADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAV 460
Query: 232 RAMCK-DKMTIGSRYVELFPST 252
+A + D R + + PST
Sbjct: 461 KAYAEVDGQVFQGRMLHVLPST 482
>gi|379642961|ref|NP_001243849.1| RNA-binding protein 12B [Equus caballus]
Length = 976
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGKAVKESDVPMRTEKHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ K ++ FF+D + ++I + D + T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPST 252
+++ A+ K + R V + P +
Sbjct: 334 LKDYNTALGLHKTVLQYRPVHIDPVS 359
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------------RCKRQ-------------DYYNAVASEVNYEGI 149
+ VE+F R R+ D+ A+ E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGVGSFSDFVEAIKEEASNSGY 122
Query: 150 -----------YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
+ HG P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSPINQGAGFHTNGTGHGDLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVAS-EVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R V + R+ + E + D G +++Y+
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIECYEKKRPVSIEKDRLGH----VSQKYSQGGYSGQKLC 401
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 402 IYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAVAAIKDL 961
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 962 NDRPVGPRKVKL 973
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|354466972|ref|XP_003495945.1| PREDICTED: probable RNA-binding protein 19 [Cricetulus griseus]
gi|344237019|gb|EGV93122.1| putative RNA-binding protein 19 [Cricetulus griseus]
Length = 954
Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 289 PTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 348
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K HG PP S + + E
Sbjct: 349 LKCNREYMGGRYIEVFREKAPSA------------------HG-PPKSSTTPWQGRTLGE 389
Query: 174 HTE--------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
H E L +R L ++ + ++ + F Y + + + K G A++ F+
Sbjct: 390 HEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFITFM 449
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 450 FPEHAVKAYAEVDGQVFQGRMLHVLPST 477
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 62 RLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
+L+GLPF CT+ + +FF+ L +VD+ L+++ R G AFV FA + AL++ RQ
Sbjct: 399 KLQGLPFRCTEQQVREFFSPLSVVDIRFLLDRRKRGKGVAFVDFATKRDYKAALKKHRQT 458
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
+G R+VEV K + +E +Y P P D ++ T + +
Sbjct: 459 LGPRFVEVLPSKTRKLPALKPTEGREAKVY-------PAPLG----EDDKGLDETGRIFV 507
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA-TGEAYVEFVSVEEAKRAMCK-DK 238
R L + + +I F+ + + + +H+ K G A+V F+ E A +A + D
Sbjct: 508 RNLAYVCTEDDIRALFEKFGPLSE-VHMPLDTQTKKPKGIAFVTFLHPENAVKAFTQLDA 566
Query: 239 MTIGSRYVELFPS 251
R + L P+
Sbjct: 567 SVFKGRLLHLLPA 579
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
K++GLPF + ++ +FF +++ + + R GK G A+V+F + + K A+ K +
Sbjct: 399 KLQGLPFRCTEQQVREFFSPLSVVDIRFLLDRRKRGK--GVAFVDFATKRDYKAALKKHR 456
Query: 239 MTIGSRYVELFPS--------TPDEARRAE 260
T+G R+VE+ PS P E R A+
Sbjct: 457 QTLGPRFVEVLPSKTRKLPALKPTEGREAK 486
>gi|345790896|ref|XP_543410.3| PREDICTED: probable RNA-binding protein 19 [Canis lupus familiaris]
Length = 970
Score = 64.3 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 15/201 (7%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F +++ A
Sbjct: 293 PTTPYTVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNAHGNKTGYIFVDFRSEEEIKQA 352
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ +R+ MG RY+E+FR K +G N P R N++++ +
Sbjct: 353 LKCNREYMGGRYIEIFREKNVP---------TTKGPLKNS--AKPWQGRTLGENEEEEDL 401
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R LP++ + ++ + F + + + + K G A+V F+ E A R
Sbjct: 402 ADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVR 461
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A + D R + + PST
Sbjct: 462 AYAEVDGQVFQGRMLHVLPST 482
>gi|410987464|ref|XP_004000021.1| PREDICTED: RNA-binding protein 12B [Felis catus]
Length = 999
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 168 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 227
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAVASEVNY----------EGIYDNDFHGSPPPSRA 163
R MG R++EV + Q + NA+ EV+ GI D F
Sbjct: 228 RSFMGSRFIEVMQGSEQQWIEFGGNAI-KEVDIPMRIEEHSPPRGINDRHFRKRSHSKSP 286
Query: 164 KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVE 223
+R + + + ++ L S+ K ++ FF+D + ++I + D + T A+V
Sbjct: 287 RRTRSRSPLGF--YVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVM 343
Query: 224 FVSVEEAKRAMCKDKMTIGSRYVELFP 250
F ++++ A+ K + R V + P
Sbjct: 344 FKTLKDYNTALGLHKTVLQYRPVHIDP 370
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 299 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 358
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE +++Y+ + +
Sbjct: 359 TVLQYRPVHIDPVSRKQMLKFIEC---YEKKRPVSIEKERLGHISQKYSQEGYPGQKLCI 415
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 416 YIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 470
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A KD
Sbjct: 925 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAM-AAIKD 983
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 984 LSDRPVGPRKVKL 996
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 89/242 (36%), Gaps = 60/242 (24%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD------------VLLVNKNGRFSGEAFVVFAGP 107
V+RL GLPF +DI FF GL I D ++ AF++FA
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEVGEAFIIFCXXXXXXXAFIIFATD 63
Query: 108 IQVEFALQRDRQNMGRRYVEVF-----------RCKRQD-------------------YY 137
A+ R + VE+F KR D +
Sbjct: 64 EDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGAGSLSNFV 123
Query: 138 NAVASEVNYEGI-----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFS 186
A+ E + G D FH G P + + ++ L +RGLP+
Sbjct: 124 EALKEEASNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPY-----LFLRGLPYL 178
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
V + ++ FF + D + DG+ G+A V+F S +A + + +GSR++
Sbjct: 179 VNEDDVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFI 236
Query: 247 EL 248
E+
Sbjct: 237 EV 238
>gi|390332535|ref|XP_001184447.2| PREDICTED: probable RNA-binding protein 19-like [Strongylocentrotus
purpuratus]
Length = 513
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+++RG+PFN + D+ KFFA L + + +N+ G+ +G FV FA + A++R+R
Sbjct: 373 TIKMRGVPFNVKEEDVVKFFAPLSMKTIRAPLNEKGQRTGVIFVEFASEDDITKAMKRNR 432
Query: 119 QNMGRRYVEVFR 130
+ MGRRYVE+FR
Sbjct: 433 EYMGRRYVELFR 444
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+KMRG+PF+VK+ ++V+FF + I G+ TG +VEF S ++ +AM +
Sbjct: 373 TIKMRGVPFNVKEEDVVKFFAPLSM--KTIRAPLNEKGQRTGVIFVEFASEDDITKAMKR 430
Query: 237 DKMTIGSRYVELF 249
++ +G RYVELF
Sbjct: 431 NREYMGRRYVELF 443
>gi|380818506|gb|AFE81126.1| putative RNA-binding protein 19 [Macaca mulatta]
gi|383412169|gb|AFH29298.1| putative RNA-binding protein 19 [Macaca mulatta]
Length = 960
Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K N N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFREKNVPTTNVAPK--NTTKSWQGRMLGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A+V F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|355786561|gb|EHH66744.1| hypothetical protein EGM_03792 [Macaca fascicularis]
Length = 960
Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K N N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFREKNVPTTNVAPK--NTTKSWQGRMLGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A+V F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|355564713|gb|EHH21213.1| hypothetical protein EGK_04225 [Macaca mulatta]
Length = 960
Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K N N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFREKNVPTTNVAPK--NTTKSWQGRMLGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A+V F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|327269511|ref|XP_003219537.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
+RG+P+ T+ DI FF GL + ++++ NG +G+ V FA P LQRDRQ M
Sbjct: 181 IRGMPYTATEGDILAFFDGLQVDGIIMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQYMR 240
Query: 123 RRYVEVFRCKRQDYYNAVASE 143
R++ ++R + + ++ +
Sbjct: 241 NRFIRIYRSNEETWIKSMGKK 261
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 89/242 (36%), Gaps = 58/242 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V +R P++ T ++ FFAG +I + LL + G GE V F A +
Sbjct: 490 VYVRNFPYDVTKREVRTFFAGFNISNYDIHLLYDDKGIGLGETLVKFRTEDDARKAESLN 549
Query: 118 RQNMGRRYV---EVFRC-------------------KRQDYYNAVASEVNYEGIYDNDFH 155
R RR++ + RC K QD+ + + +D+
Sbjct: 550 R----RRFLGTEVLLRCISEKQMKEFGVNVPPVSDGKMQDHIRSYERGQQGNRKHPSDYR 605
Query: 156 GSPPPSRAKRYNDKDQMEHTE----------------------------ILKMRGLPFSV 187
P + N KD TE ++K++ +PF
Sbjct: 606 HPPSDLISTSDNFKDSAPFTEFGEGARGNFPGGRFMSDSNVRGSSNCFTLIKLKNIPFQA 665
Query: 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYV 246
+EI+ FF YKII + + I G +GEA + V+ EA + + + +G R +
Sbjct: 666 TPNEILDFFHGYKIIPESLSIQHNQYGLPSGEAVIALVNYNEAMAVVNELNDRPLGQRKI 725
Query: 247 EL 248
L
Sbjct: 726 RL 727
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 20/189 (10%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
PP + ++ LPF ++ FF LDI D L + R + +A V+F
Sbjct: 369 PPHNGEHYIHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKIPDNRPNKDAVVMFRSMRD 428
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-----FHGSPPPSRAK 164
AL + + + + +F ++ + + G +N+ +H +
Sbjct: 429 YYSALGYHKYPLRGQEILLFPISKE-------AVMQLAGFSENEKSPERYHIANEKGDWD 481
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
RY+D + +R P+ V K E+ FF + I IH+ G GE V+F
Sbjct: 482 RYSDPKT-----CVYVRNFPYDVTKREVRTFFAGFNISNYDIHLLYDDKGIGLGETLVKF 536
Query: 225 VSVEEAKRA 233
+ ++A++A
Sbjct: 537 RTEDDARKA 545
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ ++ LPF ++K E+ FF+D I + I PD + +A V F S+ + A+
Sbjct: 377 IHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKIPDNRPNKDAVVMFRSMRDYYSALGYH 436
Query: 238 KMTIGSRYVELFP 250
K + + + LFP
Sbjct: 437 KYPLRGQEILLFP 449
>gi|109098882|ref|XP_001106082.1| PREDICTED: probable RNA-binding protein 19 [Macaca mulatta]
Length = 998
Score = 64.3 bits (155), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 328 PTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK---- 169
L+ +R+ MG RY+EVFR K N P + K + +
Sbjct: 388 LKCNREYMGGRYIEVFREKNVPTTNVA------------------PKNTTKSWQGRMLGE 429
Query: 170 ----DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ + + L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 430 NEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFM 489
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A + D R + + PST
Sbjct: 490 FPEHAVKAYSEVDGQVFQGRMLHVLPST 517
>gi|402580830|gb|EJW74779.1| hypothetical protein WUBG_14313, partial [Wuchereria bancrofti]
Length = 292
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKR 232
T I+++ GLP+ K EIV+FF+ +I + I + R GK GEA+V F+ E A +
Sbjct: 25 ETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASK 84
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRA 259
A+ K+K I RYV+++PS+ E RA
Sbjct: 85 ALAKNKEYIQHRYVDIYPSSYGEMLRA 111
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 48 YGGGFPPPPSFP-----VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFS----G 98
YGG P + P +VRL GLP+ CT +I +FF L+I D +V R+S G
Sbjct: 12 YGGSLADP-NLPGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKG 70
Query: 99 EAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
EAFV F AL ++++ + RYV+++
Sbjct: 71 EAFVAFIDDESASKALAKNKEYIQHRYVDIY 101
>gi|172088112|ref|NP_082502.2| RNA-binding protein 12B-A [Mus musculus]
gi|124020998|sp|Q80YR9.2|R12BA_MOUSE RecName: Full=RNA-binding protein 12B-A; AltName: Full=RNA-binding
motif protein 12B-A
Length = 836
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 27/271 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
RGLP+ + D+ FF+GL VD +LL + +GR +G+A V FA + L+ R M
Sbjct: 159 RGLPYLVNEDDVRVFFSGL-CVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 122 GRRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQM 172
G R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 218 GSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPR 274
Query: 173 EHTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++ L + K ++ F+D + D+I + D + T A+V F +
Sbjct: 275 ARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQ 333
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
++ A+ K + R V + P + E R
Sbjct: 334 KDYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A KD
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 820
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 LSGRPVGPRKVKL 833
>gi|75071008|sp|Q5RFT7.1|RB12B_PONAB RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
gi|55725003|emb|CAH89370.1| hypothetical protein [Pongo abelii]
Length = 761
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 20/229 (8%)
Query: 41 SGFQPYGYGGGF-------PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNK 92
+GF G G G P P + LRGLP+ + D+ FF+GL + V+ L +
Sbjct: 130 AGFHSNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHH 189
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN 152
+GR +G+A V FA + L+ R MG R++EV + Q + + V +
Sbjct: 190 DGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRR 249
Query: 153 DFHGSPPPSRAKRYNDKDQMEHTE-----------ILKMRGLPFSVKKSEIVQFFKDYKI 201
SPP R+ K + + ++ L S+ + ++ FF+ +
Sbjct: 250 SEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDL 309
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
+++I + D T A+V F ++++ A+ K + R V + P
Sbjct: 310 TDEQIRFLYK-DENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDP 357
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR----AKRYNDKDQMEH 174
+ R V + R+ +A Y+ GSP R +++Y+ +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-------YEKKRSGSPERDRPGHVSQKYSQEGNSGQ 398
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 399 KLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 49/231 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV--------------------------------------- 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNIIESVKEEASNSGY 122
Query: 141 ASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
S +N + G + N HG+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHSNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 226
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|148673677|gb|EDL05624.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673678|gb|EDL05625.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673679|gb|EDL05626.1| mCG123728, isoform CRA_a [Mus musculus]
Length = 834
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
RGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R MG
Sbjct: 159 RGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG 218
Query: 123 RRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQME 173
R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 219 SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPRA 275
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + ++ L + K ++ F+D + D+I + D + T A+V F + +
Sbjct: 276 RSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQK 334
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
+ A+ K + R V + P + E R
Sbjct: 335 DYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A KD
Sbjct: 760 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 818
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 819 LSGRPVGPRKVKL 831
>gi|187953621|gb|AAI37621.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
RGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R MG
Sbjct: 159 RGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG 218
Query: 123 RRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQME 173
R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 219 SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPRA 275
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + ++ L + K ++ F+D + D+I + D + T A+V F + +
Sbjct: 276 RSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQK 334
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
+ A+ K + R V + P + E R
Sbjct: 335 DYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD-- 237
+ LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 762 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAV-KDLS 820
Query: 238 KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 GRPVGPRKVKL 831
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 27/218 (12%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 290 PTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK-------RY 166
L+ +R+ MG RY+EVFR K+ A A+ G+P S A +
Sbjct: 350 LKCNREYMGGRYIEVFREKQ-----ASAAR------------GAPKSSSAPWQGRTLGEH 392
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+++ + + L +R L ++ + ++ + F Y + + + K G A+V F+
Sbjct: 393 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 452
Query: 227 VEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAESRS 263
E A +A + D R + + PST + E+ +
Sbjct: 453 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEANQEANA 490
>gi|29747798|gb|AAH50844.1| RNA binding motif protein 12B [Mus musculus]
Length = 836
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 27/271 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
RGLP+ + D+ FF+GL VD +LL + +GR +G+A V FA + L+ R M
Sbjct: 159 RGLPYLVNEDDVRVFFSGL-CVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 122 GRRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQM 172
G R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 218 GSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPR 274
Query: 173 EHTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++ L + K ++ F+D + D+I + D + T A+V F +
Sbjct: 275 ARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQ 333
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
++ A+ K + R V + P + E R
Sbjct: 334 KDYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A KD
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 820
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 LSGRPVGPRKVKL 833
>gi|71067349|ref|NP_945195.1| RNA-binding protein 12B-B [Mus musculus]
gi|341941784|sp|Q66JV4.2|R12BB_MOUSE RecName: Full=RNA-binding protein 12B-B; AltName: Full=RNA-binding
motif protein 12B-B
gi|26348891|dbj|BAC38085.1| unnamed protein product [Mus musculus]
Length = 834
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
RGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R MG
Sbjct: 159 RGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG 218
Query: 123 RRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQME 173
R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 219 SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPRA 275
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + ++ L + K ++ F+D + D+I + D + T A+V F + +
Sbjct: 276 RSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQK 334
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
+ A+ K + R V + P + E R
Sbjct: 335 DYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD-- 237
+ LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 762 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAV-KDLS 820
Query: 238 KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 GRPVGPRKVKL 831
>gi|355715636|gb|AES05391.1| RNA binding motif protein 19 [Mustela putorius furo]
Length = 823
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 15/201 (7%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 294 PTTPYTVKLRGAPFNVTEKNVTEFLAPLRPVAIRIVRNAHGNKTGYIFVDLSSEEEVKQA 353
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ R+ MG RY+EVFR K N ++ + P R N++++ +
Sbjct: 354 LRCHREYMGGRYIEVFREK-----NVPTAQAPLKS------SARPWQGRTLGENEEEEDL 402
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R LP++ + ++ Q F + + + + K G A+V F+ E A R
Sbjct: 403 ADSGRLFIRNLPYTSTEEDLEQLFSKFGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVR 462
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A + D R + + PST
Sbjct: 463 AYAEVDGQVFQGRMLHVLPST 483
>gi|311253626|ref|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scrofa]
Length = 986
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 17/208 (8%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAVASE---------VNYEGIYDNDFHGSPPPSRAK 164
R MG R++EV + Q + NA+ + GI D F +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPR 274
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
R + + + ++ L S+ K ++ FF+D + ++I + D + T A+V F
Sbjct: 275 RTRSRSPLGF--YVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMF 331
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPST 252
++++ A+ K + R V + P +
Sbjct: 332 KTLKDYNTALGLHKTVLQYRPVHIDPVS 359
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIEC---YEKKRPASIEKEKLGHISQKYSQEGYSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKA 457
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 43/227 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +DI FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII---GGEVGEAFIIFATDEDARRAISRS 60
Query: 118 RQNMGRRYVEVF-----------RCKRQDYYN---------AVASEVNY-EGIYD---ND 153
+ VE+F KR D V S N+ E + + N
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRMGRDRPGSGAPGVGSLSNFVEALKEEASNS 120
Query: 154 FHGSPPPSRAKRYNDKD-----QMEHTEILK-------MRGLPFSVKKSEIVQFFKDYKI 201
+GSP A + + + T LK +RGLP+ V + ++ FF +
Sbjct: 121 GYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV 180
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 --DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y++I D + I G TGEA V ++ EA A+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 972 NDRPVGPRKVKL 983
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|307110461|gb|EFN58697.1| hypothetical protein CHLNCDRAFT_20050, partial [Chlorella
variabilis]
Length = 81
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+++RGLPF+ +++QFF+ + + E + C PDG+ TGEAYV E A+
Sbjct: 1 VRLRGLPFTSTAQDVLQFFEGVETVGGEAGVVFTCTPDGRPTGEAYVALPDAEALAGAVA 60
Query: 236 KDKMTIGSRYVELFPST 252
+ K IG+RY+E+F S+
Sbjct: 61 RHKDKIGTRYIEIFESS 77
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
VRLRGLPF T D+ +FF G++ V V +GR +GEA+V + A+
Sbjct: 1 VRLRGLPFTSTAQDVLQFFEGVETVGGEAGVVFTCTPDGRPTGEAYVALPDAEALAGAVA 60
Query: 116 RDRQNMGRRYVEVFRCKRQD 135
R + +G RY+E+F + D
Sbjct: 61 RHKDKIGTRYIEIFESSKGD 80
>gi|395818217|ref|XP_003782532.1| PREDICTED: RNA-binding protein 12B isoform 3 [Otolemur garnettii]
Length = 996
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 165 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 224
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAVA-------SEVNY--EGIYDNDFHGSPPPSRAK 164
R MG R++EV + Q + NAV SE + GI D F +
Sbjct: 225 RSFMGSRFIEVMQGSEQQWIEFGGNAVKELDVPVRSEEHSPPRGINDRHFRKRSHSKSPR 284
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
R + + + ++ L S+ K +I FF D + ++I + D + T A+V F
Sbjct: 285 RTRSRSPLGF--YVHLKNLSLSINKRDIRNFFSDIDLTNEQIRFLYK-DERRTRYAFVMF 341
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFP 250
++++ A+ K + R V + P
Sbjct: 342 KTLKDYNTALGLHKTVLQYRPVYIDP 367
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + DI FF+ +D+ + + + K+ R + AFV+F AL +
Sbjct: 296 VHLKNLSLSINKRDIRNFFSDIDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 355
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE P A++Y+++ +
Sbjct: 356 TVLQYRPVYIDPVSRKQMLKFIEC---YEKKRPGSVEKERPGHVAQKYSEEGHSSQKLCI 412
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 413 YIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 467
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGKI-GEAFIIFATDEDARRAISRSGG 72
Query: 120 NMGRRYVEVFRC------------------------------KRQDYYNAVASEVNYEGI 149
+ VE+F R D+ V E + G
Sbjct: 73 FIKDSSVELFLSSKAEMQKTIDVKRTDRVGRGRPGSGASGVGSRSDFIEPVKEEASNSGY 132
Query: 150 -----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D F HG P + + ++ L +RGLP+ V + ++ FF
Sbjct: 133 GSSINQDAGFHTNGTGHGELRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 187
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 188 LCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 235
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 922 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 981
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 982 NDRPVGPRKVKL 993
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGKIGEAFIIFATDEDARRAISR 69
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 70 SGGFIKDSSVELFLSSKAEMQKT 92
>gi|345479719|ref|XP_001600826.2| PREDICTED: epithelial splicing regulatory protein 2-like [Nasonia
vitripennis]
Length = 746
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK--NGRFSGEAFVVFAGPIQVE 111
P PS V + LP ++DI K F I D+ + +K NG A+V FA +
Sbjct: 390 PTPS-SCVLVSDLPSFVKEMDIAKMFQDWKINDLFITSKKENGGMQYYAYVQFARLDDAK 448
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
A Q Q MG + V V + + A + +E ++ D
Sbjct: 449 LA-QSKPQKMGSKIVMVSSISEEKFEQA---KNEHEQLH-----------LGSGGGGGDG 493
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + MRGLP+ +I+ ++ D ++ +IH+ +GK GE + EF S EEA
Sbjct: 494 GASFDCIIMRGLPYQTIDRDILDYYSDIGLVPHRIHMLLNQNGKPAGECFCEFNSCEEAV 553
Query: 232 RAMCKDKMTIG 242
RA K+ + +G
Sbjct: 554 RATAKNGVPLG 564
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 55/233 (23%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFA 113
SF + +RGLP+ D DI +++ + +V +L+N+NG+ +GE F F + A
Sbjct: 496 SFDCIIMRGLPYQTIDRDILDYYSDIGLVPHRIHMLLNQNGKPAGECFCEFNSCEEAVRA 555
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYD---------------------- 151
++ +G+ + R + +A + + D
Sbjct: 556 TAKNGVPLGKNVPSIELVNRNKMLDTLAMVDSTSKMIDGHSQPKQLFMGDPRPRFSPMHH 615
Query: 152 ---------NDF-------HGSPP-------PSRAKRYNDKDQMEHTE-------ILKMR 181
N+F G PP P+ A H E +L +
Sbjct: 616 PSMRFPPGMNNFGMRGPPMMGMPPRHMMGRHPAAAMSGPPGPPGPHLEGFGKPGCVLSLE 675
Query: 182 GLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+PF EI+ FF D+++ +++ G TG+A V F S EA+RA+
Sbjct: 676 NVPFKADIDEIIDFFGDFQVSREQVIRRYNDKGMPTGDARVAFTSPLEAQRAL 728
>gi|383853070|ref|XP_003702047.1| PREDICTED: uncharacterized protein LOC100882770 [Megachile
rotundata]
Length = 886
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGE--AFVVFAGPIQVEFAL 114
S + L LP ++DI K F I D+ + + S + A+V FA
Sbjct: 553 SSACILLTDLPSFTKEMDIAKLFHDWKINDLFITSSKESGSAQYMAYVQFA--------- 603
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+E + V I + F ++AKR +++ M
Sbjct: 604 ----------RIEDAKASVNASLKIGNKPVTATAITEEKF------AQAKRDHEQASMNQ 647
Query: 175 T---EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
T + + MRGLPF +I+ FF D I+ +IH+ GK GE + EF + +EA
Sbjct: 648 TASSDCVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQSGKPAGECFCEFDTTDEAL 707
Query: 232 RAMCKDKMTIGSRY--VELFP 250
RA K+ + G +EL P
Sbjct: 708 RATAKNGLPFGKNVPTIELVP 728
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 43/216 (19%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V +RGLPF D DI FF+ + IV +L+N++G+ +GE F F + A ++
Sbjct: 654 VIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQSGKPAGECFCEFDTTDEALRATAKN 713
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP----------PPSRAKRYN 167
G+ + R + V+ + I H P P + R+
Sbjct: 714 GLPFGKNVPTIELVPRAKMLETLGM-VDPQAIETQQQHFPPLQEQRPRFSGPMNHLHRFG 772
Query: 168 DKD----------------------QMEHTE-------ILKMRGLPFSVKKSEIVQFFKD 198
+ M++ E +L + +PF +EI++FF D
Sbjct: 773 NSTFGPRCPPGPMGIPRHLLSRHPGSMDYVEGFGKPGCVLSLENVPFKADINEIIEFFGD 832
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ + + + G TG+A V F S EA+RA+
Sbjct: 833 FDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 868
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 106/270 (39%), Gaps = 47/270 (17%)
Query: 1 MYGSRGAILGSGGVSDGYEVGSKRQRMM-EPNPY-FAVSSSASGF--------------- 43
MYGS G+I G+ SK Q + NP+ F +SS GF
Sbjct: 377 MYGSNGSINYRPGIRPNNPFMSKVQELEGRRNPHAFQANSSQFGFDNDRQASRAATGNSR 436
Query: 44 ----QPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRF 96
G G G V +R +P + T D+ F G+ I + L+N N G
Sbjct: 437 FSNESKSGSGTGH-------CVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNR 489
Query: 97 SGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHG 156
G A+V F+ E AL R G VEV + AV S
Sbjct: 490 VGIAYVKFSKAEGKELALSTPRYVRGSE-VEVLHLDESIFDKAVDSY------------- 535
Query: 157 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA 216
SP R + + + + + + + LP K+ +I + F D+K I D + + G A
Sbjct: 536 SPEKERDRSEDGVEDVRSSACILLTDLPSFTKEMDIAKLFHDWK-INDLFITSSKESGSA 594
Query: 217 TGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246
AYV+F +E+AK A + IG++ V
Sbjct: 595 QYMAYVQFARIEDAK-ASVNASLKIGNKPV 623
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
>gi|395818213|ref|XP_003782530.1| PREDICTED: RNA-binding protein 12B isoform 1 [Otolemur garnettii]
gi|395818215|ref|XP_003782531.1| PREDICTED: RNA-binding protein 12B isoform 2 [Otolemur garnettii]
Length = 986
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 17/206 (8%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYY----NAVA-------SEVNY--EGIYDNDFHGSPPPSRAK 164
R MG R++EV + Q + NAV SE + GI D F +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKELDVPVRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
R + + + ++ L S+ K +I FF D + ++I + D + T A+V F
Sbjct: 275 RTRSRSPLGF--YVHLKNLSLSINKRDIRNFFSDIDLTNEQIRFLYK-DERRTRYAFVMF 331
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFP 250
++++ A+ K + R V + P
Sbjct: 332 KTLKDYNTALGLHKTVLQYRPVYIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + DI FF+ +D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDIRNFFSDIDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE P A++Y+++ +
Sbjct: 346 TVLQYRPVYIDPVSRKQMLKFIEC---YEKKRPGSVEKERPGHVAQKYSEEGHSSQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGKI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRC------------------------------KRQDYYNAVASEVNYEGI 149
+ VE+F R D+ V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDVKRTDRVGRGRPGSGASGVGSRSDFIEPVKEEASNSGY 122
Query: 150 -----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D F HG P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGELRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 912 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 972 NDRPVGPRKVKL 983
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGKIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|410562529|pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition
Motif, Rrm1, From The Heterogeneous Nuclear
Ribonucleoprotein H From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8614a
Length = 108
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 115 QRDRQNMGRRYVEVFR 130
++DR+ MG RYVEVF+
Sbjct: 69 KKDRETMGHRYVEVFK 84
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 235 CKDKMTIGSRYVELFPST 252
KD+ T+G RYVE+F S
Sbjct: 69 KKDRETMGHRYVEVFKSN 86
>gi|395833986|ref|XP_003789998.1| PREDICTED: probable RNA-binding protein 19 [Otolemur garnettii]
Length = 959
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 15/201 (7%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F +V+ A
Sbjct: 290 PTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFNSEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ +R+ MG RY+EVFR K + +A G +P R N++++ +
Sbjct: 350 LKCNREYMGGRYIEVFREKS----SPMAKGPQKRGT-------TPWQGRTLGDNEEEEDL 398
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R LP++ + ++ + F + + + + K G A+V F+ E A +
Sbjct: 399 ADSGRLFVRNLPYTSTEEDLEKLFSKFGPLSEIHYPIDSLIKKPKGFAFVTFMFPEHAVK 458
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A + D R + + PST
Sbjct: 459 AYTEVDGQVFQGRMLHVLPST 479
>gi|74199513|dbj|BAE41443.1| unnamed protein product [Mus musculus]
Length = 618
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 69 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 128
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTE 176
+ R V + R++ + YE P +++Y+ +
Sbjct: 129 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 185
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LPF V K E+ +FF D+ ++ED IH+ C G GEA V F S E+A +A
Sbjct: 186 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIHLLCDDKGVGLGEALVRFKSEEQAMKA 242
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 182 GLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK--M 239
LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 548 NLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAV-KDLSGR 606
Query: 240 TIGSRYVEL 248
+G R V+L
Sbjct: 607 PVGPRKVKL 615
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 28/208 (13%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 285 PTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEEVKKA 344
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN------ 167
L+ +R+ MG RY+EVFR K+ +A E P S K +
Sbjct: 345 LKCNREYMGGRYIEVFREKQV----PMAKE--------------PLKSSTKAWQGRMLGE 386
Query: 168 --DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+++ + + L +R LP++ + ++ + F Y + + K G A+V F+
Sbjct: 387 NEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSTYGPLSELHFPIDSLTKKPKGFAFVTFL 446
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E A +A D R + + PST
Sbjct: 447 FPEHAVKAYSAVDGQVFQGRMLHVLPST 474
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 155 HGSPPPSRAKRYNDKDQMEHT--EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
HG P SRA+ +Q E T +K+RG PF+V + + +F K + I I
Sbjct: 266 HGRPQDSRAESEKPTNQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPV--AIRIVRNA 323
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
G TG +V+F S EE K+A+ ++ +G RY+E+F
Sbjct: 324 HGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVF 360
>gi|348588498|ref|XP_003480003.1| PREDICTED: RNA-binding protein 12B-like [Cavia porcellus]
Length = 850
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + + + + I SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSERQWIEFGGDAIEKGEIPMRTEGHSPPRGVNDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L +V K ++ FF+D + ++I + D K T A+V F +
Sbjct: 275 RTRSRSPVGFYVHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYK-DEKRTRYAFVTFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
++ K A+ K + R V + P
Sbjct: 334 QKDYKTALGFHKTILQHRPVHVDP 357
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N + D+ FF +D+ + + + K+ + + AFV F + AL +
Sbjct: 286 VHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKRTRYAFVTFKTQKDYKTALGFHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVAS-EVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R V V ++ + S E G + + G +++Y+ +
Sbjct: 346 TILQHRPVHVDPVSKKQMLKFIESYEKKRPGSIEKERSGHV----SQKYSQEGYSGQKLC 401
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 402 IYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQATKA 457
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 45/228 (19%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +DI FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII---GGDIGEAFIIFATDEDARRAICRS 60
Query: 118 RQNMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYE 147
+ VE+F KR D Y A+ + N
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRIERGRPGSGASGVGNLSNYIEAMKEDENNS 120
Query: 148 GI-----YDNDFH--GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK 200
G D FH G+ R + E+ + +RGLP+ V + ++ FF
Sbjct: 121 GYGSSINQDAGFHTNGTGLDDLRPRKTRPSKAENPYLF-LRGLPYLVNEDDVRVFFSGLC 179
Query: 201 IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 180 V--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+C+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDIGEAFIIFATDEDARRAICR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 776 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 835
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 836 NDRPVGPRKVKL 847
>gi|402583247|gb|EJW77191.1| hypothetical protein WUBG_11899 [Wuchereria bancrofti]
Length = 82
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKD----YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
I++MRGLP+ +++I++FF + K+ + I + DG+ TG+A+V F + E ++
Sbjct: 2 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 61
Query: 233 AMCKDKMTIGSRYVELF 249
A+ K K TIG+RY+ELF
Sbjct: 62 ALTKHKRTIGTRYIELF 78
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 7/78 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFA----GLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEF 112
+VR+RGLP++CT+ I +FFA G + D +L VNK +GR +G+AFV+F +
Sbjct: 2 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 61
Query: 113 ALQRDRQNMGRRYVEVFR 130
AL + ++ +G RY+E+FR
Sbjct: 62 ALTKHKRTIGTRYIELFR 79
>gi|328697641|ref|XP_003240396.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like isoform 2 [Acyrthosiphon pisum]
Length = 854
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + L F T++++ + + +VLLV GR G +V+F P VE AL++DR+
Sbjct: 615 VFVSNLDFAVTELEVKDALSSVGHCEVLLVRDFKGRSKGFGYVLFEKPEMVEEALKKDRE 674
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
++ R + V +C+ SR+ ++E ++
Sbjct: 675 SVNNRPMFVSKCQPDK------------------------QSRSSGLRFPTELEKNKLF- 709
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
++GLPF+ K++I FK Y ++D + + +G + G AYV+F A +A+ K D
Sbjct: 710 VKGLPFTCTKTDIENIFKPYGALKD-VRVVTFRNGHSKGLAYVDFEDEVSAAQALLKTDN 768
Query: 239 MTIGSRYVELFPSTPDEAR 257
I R + + S P E R
Sbjct: 769 TIIKDRTISVALSRPPERR 787
>gi|328697639|ref|XP_001946245.2| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like isoform 1 [Acyrthosiphon pisum]
Length = 854
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + L F T++++ + + +VLLV GR G +V+F P VE AL++DR+
Sbjct: 615 VFVSNLDFAVTELEVKDALSSVGHCEVLLVRDFKGRSKGFGYVLFEKPEMVEEALKKDRE 674
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
++ R + V +C+ SR+ ++E ++
Sbjct: 675 SVNNRPMFVSKCQPDK------------------------QSRSSGLRFPTELEKNKLF- 709
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
++GLPF+ K++I FK Y ++D + + +G + G AYV+F A +A+ K D
Sbjct: 710 VKGLPFTCTKTDIENIFKPYGALKD-VRVVTFRNGHSKGLAYVDFEDEVSAAQALLKTDN 768
Query: 239 MTIGSRYVELFPSTPDEAR 257
I R + + S P E R
Sbjct: 769 TIIKDRTISVALSRPPERR 787
>gi|380019192|ref|XP_003693498.1| PREDICTED: uncharacterized protein LOC100871735 [Apis florea]
Length = 879
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFAL 114
S + L LP ++DI K F I D+ + + ++G A+V FA
Sbjct: 546 SSACILLTDLPSFTKEMDIAKLFHDWKINDLFITSTKESGSIQCMAYVQFA--------- 596
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+E + V I + F ++AKR ++++ M
Sbjct: 597 ----------RIEDAKASVNTSLKIGNKPVTATAITEEKF------AQAKRDHEQNSMNQ 640
Query: 175 T---EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
T + + MRGLPF +I+ FF D I+ +IH+ +GK GE + EF + +EA
Sbjct: 641 TASSDCVIMRGLPFQTIDRDILDFFSDIGIVPHRIHM-LHQNGKPAGECFCEFDTADEAL 699
Query: 232 RAMCKDKMTIGSRY--VELFP 250
RA K+ + G +EL P
Sbjct: 700 RATAKNGLPFGKNVPTIELVP 720
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P + T D+ F G+ I + L+N N G G A+V F+ E AL
Sbjct: 444 VEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTT 503
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV + AV S SP R + + D + +
Sbjct: 504 RFVRGSE-VEVLHLDESIFDKAVDSY-------------SPEKERDRGEDGIDDVRSSAC 549
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + LP K+ +I + F D+K I D + + G AYV+F +E+AK A
Sbjct: 550 ILLTDLPSFTKEMDIAKLFHDWK-INDLFITSTKESGSIQCMAYVQFARIEDAK-ASVNT 607
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG++ V T ++ +A+ Q
Sbjct: 608 SLKIGNKPVTATAITEEKFAQAKRDHEQ 635
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L + +PF +EI++FF D+ + + + G TG+A V F S EA+RA+
Sbjct: 804 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 861
>gi|449268059|gb|EMC78930.1| putative RNA-binding protein 19, partial [Columba livia]
Length = 922
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG+P N T+ I +FF L V + + K G+ SG FV ++ AL+R ++
Sbjct: 301 VKLRGVPSNITEQKIREFFLPLKPVAIRIGKKARGKNSGYVFVDLKSEADMQRALKRKKE 360
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+G R +EVFRC A A N P + +++ + + L
Sbjct: 361 YLGGRCIEVFRCSNTPKETAPAKPDN-----------QPWQRIMRDDEEEEDLAESGRLF 409
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAMCK-D 237
+R LPF+ + ++ + F Y + D IH R K G A+V ++ E A +A + D
Sbjct: 410 VRNLPFTSTEEDLEKIFSKYGPLSD-IHFPIDRLTKKPKGFAFVTYMIPEHAVKAYAELD 468
Query: 238 KMTIGSRYVELFPST 252
R + L PST
Sbjct: 469 GQVFQGRMMHLLPST 483
>gi|313244026|emb|CBY14896.1| unnamed protein product [Oikopleura dioica]
Length = 407
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+KM GLP+ + + EI +FF + + +I I DG+ TG A+ F S ++ AM K
Sbjct: 266 IVKMSGLPYRITRGEIREFFSPIDLTDVRIEIGK--DGRTTGNAFAAFFSDDDVWNAMQK 323
Query: 237 DKMTIGSRYVELF 249
+K +G+RYVEL+
Sbjct: 324 NKQMLGTRYVELY 336
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+V++ GLP+ T +I +FF+ +D+ DV + + K+GR +G AF F V A+Q+++
Sbjct: 266 IVKMSGLPYRITRGEIREFFSPIDLTDVRIEIGKDGRTTGNAFAAFFSDDDVWNAMQKNK 325
Query: 119 QNMGRRYVEVFR 130
Q +G RYVE++
Sbjct: 326 QMLGTRYVELYN 337
>gi|291388277|ref|XP_002710735.1| PREDICTED: RNA binding motif protein 12-like [Oryctolagus
cuniculus]
Length = 864
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + + + + + + + SP + + + +
Sbjct: 215 RSFMGSRFIEVMQGSEEQWIELGGNTIKEDDVPMRSEEHSPARGIDRHFRKRSHSKSPRR 274
Query: 177 ---------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ ++ L S+ K ++ FF+D + ++I + D + T A+V F ++
Sbjct: 275 TRSRSPLGFYVHLKNLSLSINKKDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKTL 333
Query: 228 EEAKRAMCKDKMTIGSRYVELFP 250
++ A+ K + R V + P
Sbjct: 334 KDYNTALGLHKTVLQYRPVHVDP 356
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLSINKKDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVAS-EVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R V V R+ + E G+ + + G +++Y+ +
Sbjct: 345 TVLQYRPVHVDPISRKQMLKFIECYEKKRPGLIEKERSGHV----SQKYSQEGYSGQKLC 400
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 401 IYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQATKA 456
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 92/227 (40%), Gaps = 43/227 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +DI FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII---GGDVGEAFIIFATDEDARRAISRS 60
Query: 118 RQNMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYE 147
+ VE+F + KR D + A+ + N
Sbjct: 61 GGYIKDSSVELFLSSRAEMQKTIQMKRTDRVGRGRPGSGASGVGSMSNFIEAIKEDANNS 120
Query: 148 GI-----YDNDFHGSPPPSRAKRYNDKDQME-HTEILKMRGLPFSVKKSEIVQFFKDYKI 201
G D FH + R ++ L +RGLP+ V + ++ FF +
Sbjct: 121 GYGSSINQDAGFHANGTGHNDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV 180
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 --DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 790 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAVVAMINYNEAMAAIKDL 849
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 850 NDRPVGPRKVKL 861
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGYIKDSSVELFLSSRAEMQKT 82
>gi|328790346|ref|XP_003251410.1| PREDICTED: hypothetical protein LOC100578631 [Apis mellifera]
Length = 878
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFAL 114
S + L LP ++DI K F I D+ + + ++G A+V FA
Sbjct: 545 SSACILLTDLPTFTKEMDIAKLFHDWKINDLFITSTKESGSVQCMAYVQFA--------- 595
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+E + V I + F ++AKR ++++ M
Sbjct: 596 ----------RIEDAKASVNTSLKIGNKPVTATAITEEKF------AQAKRDHEQNSMNQ 639
Query: 175 T---EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
T + + MRGLPF +I+ FF D I+ +IH+ +GK GE + EF + +EA
Sbjct: 640 TASSDCVIMRGLPFQTIDRDILDFFSDIGIVPHRIHM-LHQNGKPAGECFCEFDTADEAL 698
Query: 232 RAMCKDKMTIGSRY--VELFP 250
RA K+ + G +EL P
Sbjct: 699 RATAKNGLPFGKNVPTIELVP 719
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKN-GRFSGEAFVVFAGPIQVEFALQRD 117
V +R +P + T D+ F G+ I + L+N N G G A+V F+ E AL
Sbjct: 443 VEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTT 502
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R G VEV + AV S SP R + + D + +
Sbjct: 503 RFVRGSE-VEVLHLDESIFDKAVDSY-------------SPEKERDRGEDGMDDVRSSAC 548
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + LP K+ +I + F D+K I D + + G AYV+F +E+AK A
Sbjct: 549 ILLTDLPTFTKEMDIAKLFHDWK-INDLFITSTKESGSVQCMAYVQFARIEDAK-ASVNT 606
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG++ V T ++ +A+ Q
Sbjct: 607 SLKIGNKPVTATAITEEKFAQAKRDHEQ 634
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ L +S +I QFF+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I ++L S+ E ++ +RQ
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAARQ 88
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+L + +PF +EI++FF D+ + + + G TG+A V F S EA+RA+
Sbjct: 803 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 860
>gi|402887773|ref|XP_003907256.1| PREDICTED: probable RNA-binding protein 19 [Papio anubis]
Length = 998
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 28/208 (13%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 328 PTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK---- 169
L+ +R+ MG RY+EVFR K N P + K + +
Sbjct: 388 LKCNREYMGGRYIEVFREKNIPTTNVA------------------PKNTTKSWQGRMLGE 429
Query: 170 ----DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
+ + + L +R LP++ + ++ + F Y + + + K G A+V F+
Sbjct: 430 NEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFM 489
Query: 226 SVEEAKRAMCK-DKMTIGSRYVELFPST 252
E +A + D R + + PST
Sbjct: 490 FPEHGVKAYSEVDGQVFQGRMLHVLPST 517
>gi|354491414|ref|XP_003507850.1| PREDICTED: RNA-binding protein 12B-A-like [Cricetulus griseus]
Length = 850
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 27/248 (10%)
Query: 27 MMEPNPYFAVSSSA---SGFQPYGYGGGFPPPPSFPV------VRLRGLPFNCTDIDICK 77
M E Y SS +GF G G P + P+ + LRGLP+ + D+
Sbjct: 123 MKEEESYSGYGSSINQDAGFHTNGTGLDIRPRKTRPLKAENPYLFLRGLPYLVNEDDVRV 182
Query: 78 FFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY 136
FF+GL + V+ L + +GR +G+A V FA I L+ R MG R++EV + Q +
Sbjct: 183 FFSGLCVDGVIFLKHHDGRNNGDAVVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQW 242
Query: 137 Y----NAV---------ASEVN-YEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
NA A E + G+ D F +R + + L ++
Sbjct: 243 IEFGGNAAKGGDVPCMRAEEHSPSRGMNDRYFRKRTHSKSPRRTRSRSPLGF--YLHLKN 300
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG 242
L S+ K ++ FFKD + ++I + D + T A+V F ++++ A+ K +
Sbjct: 301 LSLSIDKRDLRNFFKDTDLTNEQIKFLYK-DERRTRYAFVMFKNLKDYNTALGLHKTVLQ 359
Query: 243 SRYVELFP 250
R V + P
Sbjct: 360 YRPVFIDP 367
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+ L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 296 LHLKNLSLSIDKRDLRNFFKDTDLTNEQIKFLYKDERRTRYAFVMFKNLKDYNTALGLHK 355
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ + YE P ++++ ++ +
Sbjct: 356 TVLQYRPVFIDPISRKQMVKFIEC---YEKKRPGSVEKGRPGRVSQKFFEEGYSGQKLYI 412
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ ++E+ I++ G GEA V F S E+A +A
Sbjct: 413 YIRNFPFDVTKVEVQKFFVDFSLVENDIYLLYDDKGVGLGEALVRFKSEEQAMKA 467
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+ GLPF EI FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 17 LLGLPFIAGPGEIPHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISRSGG 72
Query: 240 TIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 73 FIKDSSVELFLSSKAEMQKT 92
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 38/221 (17%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
L GLPF +I FF GL I D + G+ GEAF++FA A+ R +
Sbjct: 17 LLGLPFIAGPGEIPHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGGFIK 75
Query: 123 RRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI--- 149
VE+F + + + +A+ E +Y G
Sbjct: 76 DSSVELFLSSKAEMQKTIEMKRTARGGRGRLGSGASGASSLYHFIDAMKEEESYSGYGSS 135
Query: 150 --YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207
D FH + + + L +RGLP+ V + ++ FF + D +
Sbjct: 136 INQDAGFHTNGTGLDIRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVI 193
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 194 FLKHHDGRNNGDAVVKFASCIDASGGLKCHRSFMGSRFIEV 234
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF YK+I D + I G GEA + ++ EA A+ +
Sbjct: 776 VKIMNLPFKANANEILDFFHGYKVIPDSVSIQYNEQGLPIGEAIIAMINYNEAIAAIKEL 835
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 836 NGRPVGPRKVKL 847
>gi|213511062|ref|NP_001133976.1| probable RNA-binding protein 19 [Salmo salar]
gi|209156026|gb|ACI34245.1| Probable RNA-binding protein 19 [Salmo salar]
Length = 912
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 12/201 (5%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEF 112
P P F V+LRG PFN + + +F L + ++ N G +G +V +VE
Sbjct: 275 PTPEF-TVKLRGCPFNVKEQQVREFMTPLKPAAIRIIKNATGNKTGYIYVDMRSEEEVEK 333
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL++++ MG RY+EVFR + AV E E + + K +++ +
Sbjct: 334 ALKKNKDYMGGRYIEVFRTSVKGEGRAVRREKGSERSFTREL---------KDDEEEEDV 384
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R LP++ + E+ F + + + + K G A+V ++ E A
Sbjct: 385 AESGRLFIRNLPYTCTEEELQDLFSKHGPLAEVVFPIDNLTKKPKGYAFVSYMIPENAVT 444
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A+ + D R + L PST
Sbjct: 445 ALAQLDGHIFQGRMLHLLPST 465
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG PF+VK+ ++ +F K I I G TG YV+ S EE ++A+ K+
Sbjct: 281 VKLRGCPFNVKEQQVREFMTPLK--PAAIRIIKNATGNKTGYIYVDMRSEEEVEKALKKN 338
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSR 264
K +G RY+E+F ++ RA R +
Sbjct: 339 KDYMGGRYIEVFRTSVKGEGRAVRREK 365
>gi|119612105|gb|EAW91699.1| RNA binding motif protein 12B [Homo sapiens]
Length = 707
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 20/237 (8%)
Query: 33 YFAVSSSASGFQPYGYGGGF-------PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV 85
Y + + +GF G G G P P + LRGLP+ + D+ FF+GL +
Sbjct: 122 YGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVD 181
Query: 86 DVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV 144
V+ L + +GR +G+A V FA + L+ R MG R++EV + Q + + V
Sbjct: 182 GVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAV 241
Query: 145 NYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE-----------ILKMRGLPFSVKKSEIV 193
+ SPP R+ K + + ++ L S+ + ++
Sbjct: 242 KEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLR 301
Query: 194 QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
FF+ + +++I + D T A+V F ++++ A+ K + R V + P
Sbjct: 302 NFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDP 357
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|26343509|dbj|BAC35411.1| unnamed protein product [Mus musculus]
Length = 521
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 289 PTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 348
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ +R MG RY+EVFR K+ +P R N++++ +
Sbjct: 349 LKCNRDYMGGRYIEVFREKQAPTARGPPKST------------TPWQGRTLGENEEEEDL 396
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R L ++ + ++ + F Y + + + K G A+V F+ E A +
Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A + D R + + PST
Sbjct: 457 AYAEVDGQVFQGRMLHVLPST 477
>gi|403295801|ref|XP_003938814.1| PREDICTED: RNA-binding protein 12B [Saimiri boliviensis
boliviensis]
Length = 1001
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V I SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDILRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVRFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVRFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRC-----------KRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDMKRTDRVGRGRPRSGASGVGSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D F HG+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|296226920|ref|XP_002759119.1| PREDICTED: RNA-binding protein 12B isoform 1 [Callithrix jacchus]
gi|296226922|ref|XP_002759120.1| PREDICTED: RNA-binding protein 12B isoform 2 [Callithrix jacchus]
gi|390475792|ref|XP_003735019.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475794|ref|XP_003735020.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475796|ref|XP_003735021.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
Length = 1001
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V I SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDILRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVRFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVRFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I + G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDICLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRC-----------KRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDMKRTDRVGRGRPRSGASGVGSLSHFIESVKEEASNSGY 122
Query: 150 -----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D F HG+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|226533389|ref|NP_001034357.2| RNA binding motif protein 19 [Gallus gallus]
Length = 957
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG P N T+ I +FF+ L + + + N G+ +G FV +V+ AL+R ++
Sbjct: 309 VKLRGAPLNVTEQKIREFFSPLKPLAIRMGKNTQGKSTGFIFVDLKSEAEVQKALKRKKE 368
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKR-YNDKDQMEHTEIL 178
+G +YVEV RC+ NA V + P R KR +++ + + L
Sbjct: 369 YIGGQYVEVSRCE-----NAPKETVTAKT-------DDQPWQRMKRDDEEEEDLSESGRL 416
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAMCK- 236
+R LPF+ + ++ + F Y + + IH R K G A++ ++ E A +A +
Sbjct: 417 FVRNLPFTSTEEDLEKIFSKYGPLSE-IHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEM 475
Query: 237 DKMTIGSRYVELFPST 252
D R + L PST
Sbjct: 476 DGQVFQGRMMHLLPST 491
>gi|226497574|ref|NP_057280.2| probable RNA-binding protein 19 [Homo sapiens]
gi|226497654|ref|NP_001140170.1| probable RNA-binding protein 19 [Homo sapiens]
gi|226497734|ref|NP_001140171.1| probable RNA-binding protein 19 [Homo sapiens]
gi|308153566|sp|Q9Y4C8.3|RBM19_HUMAN RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
Length = 960
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens]
Length = 960
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|158256324|dbj|BAF84133.1| unnamed protein product [Homo sapiens]
gi|189054403|dbj|BAG37176.1| unnamed protein product [Homo sapiens]
Length = 960
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|327269587|ref|XP_003219575.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
+R +P+ T+ DI FF GL + ++++ NG +G+ V FA P LQRDRQ M
Sbjct: 181 IRSMPYTATEDDIIAFFDGLQVDGMIMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQYMR 240
Query: 123 RRYVEVFRCKRQDYYNAVASE 143
R++ ++R + + ++ +
Sbjct: 241 HRFIRIYRSNEETWIKSMGKK 261
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 89/243 (36%), Gaps = 60/243 (24%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V +R P++ T +I FFAG +I + LL + G GE V F R
Sbjct: 490 VYVRNFPYDVTKREIHTFFAGFNINNYDIHLLYDDKGIGLGETLVKFRTEDDA-----RK 544
Query: 118 RQNMGRRY---VEVF-RC-------------------KRQDYYNAVASEVNYEGIYDNDF 154
+N+ RR EV RC K QD+ + + +D+
Sbjct: 545 AENLNRRRFLGTEVLLRCISEKQMKEFGVNVPPVSDGKMQDHIRSYERGQQGNQKHPSDY 604
Query: 155 HGSPPPSRAKRYNDKDQMEHTE----------------------------ILKMRGLPFS 186
P + N KD TE ++K++ +PF
Sbjct: 605 RHPPSDLISTSDNFKDSAPFTEFGEDVRGNFPGGRFMSDSNVSGSSNCFTLIKLKNIPFR 664
Query: 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRY 245
+EI+ FF YKII + + I G +GEA + V+ EA + + + IG R
Sbjct: 665 ATPNEILDFFHGYKIIPESLSIQHNQYGLPSGEAVIALVNYNEAMAVVNELNDRPIGQRK 724
Query: 246 VEL 248
+ L
Sbjct: 725 IRL 727
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ ++ LPF ++K E+ FF+D I + I PD + +A V F S+ + A+
Sbjct: 377 IHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKIPDNRPNKDAVVMFRSMRDYYSALGYH 436
Query: 238 KMTIGSRYVELFPSTPDEA 256
K + + + LFP P EA
Sbjct: 437 KYPLRGQEILLFP-IPKEA 454
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 20/189 (10%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
PP + ++ LPF ++ FF LDI D L + R + +A V+F
Sbjct: 369 PPHNGEHYIHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKIPDNRPNKDAVVMFRSMRD 428
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-----FHGSPPPSRAK 164
AL + + + + +F ++ + + G +N+ +H +
Sbjct: 429 YYSALGYHKYPLRGQEILLFPIPKE-------AVMQLAGFSENEKSPERYHIANEKGDWD 481
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
RY+D + +R P+ V K EI FF + I IH+ G GE V+F
Sbjct: 482 RYSDP-----KTCVYVRNFPYDVTKREIHTFFAGFNINNYDIHLLYDDKGIGLGETLVKF 536
Query: 225 VSVEEAKRA 233
+ ++A++A
Sbjct: 537 RTEDDARKA 545
>gi|334321772|ref|XP_001372905.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 362
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ ++I FF + ++HI DGKATGEA V+FV+ E+A AM K+
Sbjct: 213 VHMRGLPYKATVNDIYHFFS--PLCPLRVHIEIGEDGKATGEADVDFVTHEDAVAAMVKE 270
Query: 238 KMTIGSRYVELFPSTPDEAR 257
K + RY+ELF + + R
Sbjct: 271 KTYMQHRYIELFLYSTAKGR 290
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+L +RGLPF K I FF + + I + GK+TG A V+F S E A+ A+ K
Sbjct: 42 LLCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQGKSTGTALVQFASQEAAEIAIRK 101
Query: 237 DKMTIGSRYVE 247
K RY+E
Sbjct: 102 HKGRPEPRYLE 112
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++ +RGLPF C I FF+GL+ V +L V+ G+ +G A V FA E A+++
Sbjct: 42 LLCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQGKSTGTALVQFASQEAAEIAIRK 101
Query: 117 DRQNMGRRYVEVFR 130
+ RY+E +
Sbjct: 102 HKGRPEPRYLENLK 115
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T DI FF+ L + V + + ++G+ +GEA V F A+ +++
Sbjct: 213 VHMRGLPYKATVNDIYHFFSPLCPLRVHIEIGEDGKATGEADVDFVTHEDAVAAMVKEKT 272
Query: 120 NMGRRYVEVF 129
M RY+E+F
Sbjct: 273 YMQHRYIELF 282
>gi|345325737|ref|XP_003430953.1| PREDICTED: G-rich sequence factor 1-like [Ornithorhynchus anatinus]
Length = 224
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLPF +IV FF K + +I + GKATGEA V F S E+A AM KD
Sbjct: 147 VRMRGLPFQANAQDIVNFFSPLKPV--RITMEYSSSGKATGEADVHFESHEDAVAAMAKD 204
Query: 238 KMTIGSRYVELF 249
+ + RY+ELF
Sbjct: 205 RSHVQHRYIELF 216
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 43 FQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAF 101
+P +G PSF VR+RGLPF DI FF+ L V + + + +G+ +GEA
Sbjct: 133 LEPVEFGTA----PSFHFVRMRGLPFQANAQDIVNFFSPLKPVRITMEYSSSGKATGEAD 188
Query: 102 VVFAGPIQVEFALQRDRQNMGRRYVEVF 129
V F A+ +DR ++ RY+E+F
Sbjct: 189 VHFESHEDAVAAMAKDRSHVQHRYIELF 216
>gi|426374260|ref|XP_004053996.1| PREDICTED: probable RNA-binding protein 19 [Gorilla gorilla
gorilla]
Length = 960
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K +G N + ++D E
Sbjct: 350 LKCNREYMGGRYIEVFREKNVP---------TTKGAPKNTTRSWQGRILGENEEEEDLAE 400
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 401 SGRLF-VRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|13279134|gb|AAH04289.1| RBM19 protein [Homo sapiens]
gi|13544005|gb|AAH06137.1| RBM19 protein [Homo sapiens]
gi|190689379|gb|ACE86464.1| RNA binding motif protein 19 protein [synthetic construct]
gi|190690741|gb|ACE87145.1| RNA binding motif protein 19 protein [synthetic construct]
Length = 960
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|40788328|dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
Length = 973
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 303 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 362
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 363 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 412
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 413 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 472
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 473 YSEVDGQVFQGRMLHVLPST 492
>gi|397525018|ref|XP_003832476.1| PREDICTED: probable RNA-binding protein 19 [Pan paniscus]
Length = 961
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|168278697|dbj|BAG11228.1| RNA binding motif protein 19 [synthetic construct]
Length = 960
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|114647138|ref|XP_522578.2| PREDICTED: probable RNA-binding protein 19 [Pan troglodytes]
gi|410216396|gb|JAA05417.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410216398|gb|JAA05418.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263956|gb|JAA19944.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263958|gb|JAA19945.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292596|gb|JAA24898.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292598|gb|JAA24899.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339181|gb|JAA38537.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339183|gb|JAA38538.1| RNA binding motif protein 19 [Pan troglodytes]
Length = 961
Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>gi|312384421|gb|EFR29153.1| hypothetical protein AND_02121 [Anopheles darlingi]
Length = 285
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 17/202 (8%)
Query: 63 LRGLPFNCTDIDICKFFA--GLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
LR + + ++ D+ +FFA G +V LV ++ G +GEA V F P + A + Q
Sbjct: 70 LRNVKASASERDVYEFFAEDGFRAKNVQLVTDEWGCRTGEAVVQFDSPSEAAHAESKSSQ 129
Query: 120 NMGRRYVEVFRCKR------QDYYNAVASEVNYEGIYDNDFHGSPPPSRAK----RYNDK 169
+G + V R ++A + + GSPP SR+ ND
Sbjct: 130 MLGNQTVFASHLDRGQVAQLMQRFDAQNQKRQEHQQRHSRGEGSPPRSRSNGGRGSENDD 189
Query: 170 DQMEH-TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
D +H + + + L + ++ +FF+DY++ + I +GKATGEA V F +
Sbjct: 190 DGDDHRSATVGLLNLAYKTTVEDVQRFFRDYRLPLENIQRLFMDNGKATGEALVRFRNPR 249
Query: 229 EAKRAM--CKDKMTIGSRYVEL 248
EA+RA+ C ++ G R V L
Sbjct: 250 EARRAIRECNNQRMFG-RNVRL 270
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 167 NDKDQM-EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV 225
ND ++ + T L +R + S + ++ +FF + + + G TGEA V+F
Sbjct: 56 NDSSELFQRTNCLLLRNVKASASERDVYEFFAEDGFRAKNVQLVTDEWGCRTGEAVVQFD 115
Query: 226 SVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260
S EA A K +G++ V F S D + A+
Sbjct: 116 SPSEAAHAESKSSQMLGNQTV--FASHLDRGQVAQ 148
>gi|126324467|ref|XP_001378428.1| PREDICTED: probable RNA-binding protein 19 [Monodelphis domestica]
Length = 969
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 12/236 (5%)
Query: 19 EVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKF 78
E K + P P + + Q G P + V+LRG PFN T+ ++ +F
Sbjct: 241 EGSDKEEEQPTPGPRGSKTGPKQPSQAQGEVRNVTAPTTAYTVKLRGAPFNVTEQNVREF 300
Query: 79 FAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYY 137
L + + +V N +G +G FV F VE AL+R++ MG RY+EVFR K
Sbjct: 301 LLPLKPMAIRIVRNAHGNKTGYVFVDFNSEGDVEKALKRNKDYMGGRYIEVFREK----- 355
Query: 138 NAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFK 197
++ + G + + D L +R LP++ + ++ + F
Sbjct: 356 -GTQGTPTHQKGNQKAWQGRELKEDEEEEDLADSGR----LFVRNLPYTSTEEDLEKLFA 410
Query: 198 DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252
Y + + + K G A++ F+ E A +A + D R + L PST
Sbjct: 411 KYGPLSEVHYPIDGLTKKPKGFAFITFMFPEHAVKAYAEVDGQIFQGRMLHLLPST 466
>gi|12851402|dbj|BAB29027.1| unnamed protein product [Mus musculus]
Length = 723
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 27/240 (11%)
Query: 41 SGFQPYGYGGGFPPPPSFPV------VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNK 92
+GF G G P + P+ + LRGLP+ + D+ FF+GL VD +LL +
Sbjct: 17 AGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGL-CVDGVILLKHH 75
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY--YNAVASEVNYEGIY 150
+GR +G+A V FA + L+ R MG R++EV + Q + + A+E
Sbjct: 76 DGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRM 135
Query: 151 DNDFHGSPPPSR-------AKRYNDKDQMEHTE-----ILKMRGLPFSVKKSEIVQFFKD 198
++ H PSR KR + K + + ++ L + K ++ F+D
Sbjct: 136 RSEEHS---PSRRINGRHFRKRSHSKSPRARSRSPLGFYVHLKNLSLNTNKRDLRNLFRD 192
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
+ D+I + D + T A+V F + ++ A+ K + R V + P + E R
Sbjct: 193 TDLTNDQIKFVYK-DERRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLIDPVSRKEMVR 251
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 172 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 231
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTE 176
+ R V + R++ + YE P +++Y+ +
Sbjct: 232 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 288
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 289 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 345
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A KD
Sbjct: 649 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 707
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 708 LSGRPVGPRKVKL 720
>gi|380786971|gb|AFE65361.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENP-----FLFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|402878712|ref|XP_003903017.1| PREDICTED: RNA-binding protein 12B isoform 1 [Papio anubis]
gi|402878714|ref|XP_003903018.1| PREDICTED: RNA-binding protein 12B isoform 2 [Papio anubis]
Length = 1001
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENP-----FLFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|355698096|gb|EHH28644.1| RNA-binding motif protein 12B [Macaca mulatta]
gi|355779824|gb|EHH64300.1| RNA-binding motif protein 12B [Macaca fascicularis]
gi|383409041|gb|AFH27734.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENP-----FLFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|170057361|ref|XP_001864450.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167876772|gb|EDS40155.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 1174
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
IL M LPF + +IV FFK Y I D + PDG++TG+A V F S ++A RA+
Sbjct: 1098 ILSMGNLPFRARNEDIVDFFKQYNITLDDVKRRYLPDGRSTGDAMVRFQSPQDAHRALET 1157
Query: 236 KDKMTIGSRYVELFPS 251
+M IG R + ++ S
Sbjct: 1158 HQQMRIGGRELRMWIS 1173
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 85/182 (46%), Gaps = 28/182 (15%)
Query: 74 DICKFFAGLDIVD--VLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130
+I +FF+G I + ++N NG+ +G A+V F +A+ R+ QNM R V+V
Sbjct: 365 EIRRFFSGQAISSNGIKMINDPNGKRTGVAYVRFLRKDAKRYAMSRNGQNMRRSAVKVES 424
Query: 131 CKRQDYYNAVASEVNYEGIYDN------DFHGSPPPSRAKR-------------YNDKDQ 171
+++ +A+ S Y+ +D + +G + +R ND+D
Sbjct: 425 ISDREFDDAIDS---YQPGFDERKPYWVESYGGRNEKKNERGEDAGVIEIGDESLNDRDN 481
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ ++ + LP + ++++ F D+ I+E + I + YV+F +++A+
Sbjct: 482 GKCGHLM-VWNLPTGTTELDLMRIFSDFTIVE--VLIIKNYKNPKQQDGYVKFCRLQDAR 538
Query: 232 RA 233
RA
Sbjct: 539 RA 540
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 164 KRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEA 220
RY+ + D E T + + L FS+++ + F K+ I +G+++GE
Sbjct: 817 NRYDQQMPDGNERTAFVLISNLEFSMREETVQTFLDREGFTPKKLQIIRNAFNGRSSGEC 876
Query: 221 YVEFVSVEEAKRAMCKDKMTIGSR 244
VEF SV+EA ++ K+ IG+R
Sbjct: 877 LVEFESVQEAGDSLIKNAAVIGNR 900
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 156 GSPPPSRAKRYNDK---DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212
G PP + R D+M+ I K+ L + EI +FF I + I + P
Sbjct: 328 GGPPNQQHYRQQSSIYDDEMDGQSI-KISNLETATGYGEIRRFFSGQAISSNGIKMINDP 386
Query: 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTI 241
+GK TG AYV F+ + + AM ++ +
Sbjct: 387 NGKRTGVAYVRFLRKDAKRYAMSRNGQNM 415
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 40/226 (17%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F L V + +V N +G +G FV F+ VE A
Sbjct: 281 PTTAYTVKLRGAPFNVTEQNVREFLVPLKPVAIRIVRNAHGNKTGYVFVDFSSEGDVEKA 340
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-- 171
L+ +++ MG RY+EVFR K P P K + ++
Sbjct: 341 LKHNKEYMGGRYIEVFREKGPRV--------------------GPKPQDKKVWQGRELKE 380
Query: 172 ------MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG---KATGEAYV 222
+ + L +R LP++ + ++ + F Y + + IH DG K G A+V
Sbjct: 381 GEEEEDLADSGRLFVRNLPYTSTEEDLEKIFAKYGPLSE-IHYPI--DGLTKKPKGFAFV 437
Query: 223 EFVSVEEAKRAMCK-DKMTIGSRYVELFPST----PDEARRAESRS 263
++ E A +A + D R + + PST P E+ AE S
Sbjct: 438 TYMFPEHAVKAFAEVDGQVFQGRMLHVLPSTIKKEPSESSDAEPAS 483
>gi|397500945|ref|XP_003821163.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B [Pan
paniscus]
Length = 1001
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|109476157|ref|XP_001054639.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 29/246 (11%)
Query: 33 YFAVSSSASGFQPYGYGGGFPPPPSFPV------VRLRGLPFNCTDIDICKFFAGLDIVD 86
Y + + +GF G G P + P+ + LRGLP+ + D+ FF+GL +
Sbjct: 122 YGSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVDG 181
Query: 87 VLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY--YNAVASE 143
V+L+ + +GR +G+A V FA + L+ R MG R++EV + Q + + AS+
Sbjct: 182 VILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTASK 241
Query: 144 VNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--------------ILKMRGLPFSVKK 189
D S S ++R ND+ + + + +R L K
Sbjct: 242 GG-----DTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTRSRSPLGFYVHLRNLSLHTNK 296
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
++ F+D + D+I + D + T A+V F + ++ A+ K + R V +
Sbjct: 297 RDLRYLFRDTDLSNDQIKFLYK-DDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLID 355
Query: 250 PSTPDE 255
P + E
Sbjct: 356 PISRKE 361
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLPF +DI FF GL I D + G+ +GEAF++FA A+ R
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIDMKRSARVGRGRPGPEASGVGNMYHFIDALKEEERYSGY 122
Query: 150 Y-----DNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V LR L + D+ F D+ + + + K+ R + AFV+F AL +
Sbjct: 285 VHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD--QMEHTE 176
+ R V + R++ + YE P +++Y+++
Sbjct: 345 TVLQYRPVLIDPISRKEMVKIIEC---YEKKRPESLEEERPGRVSQKYSEEGFPGSGQKL 401
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LPF V K E+ +FF D+ ++ED I++ G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQAMKA 458
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLPF +I FFK I + +H+ G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF +EI+ FF YK+I + + G GEA V + EA A KD
Sbjct: 769 VKISNLPFKANSNEILDFFHGYKVIPGSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 827
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 828 LSGRPVGPRKVKL 840
>gi|297299765|ref|XP_002808531.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like
[Macaca mulatta]
Length = 1001
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENP-----FLFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 60.8 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 16/212 (7%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 289 PTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 348
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ +R MG RY+EVFR K+ +P R N++++ +
Sbjct: 349 LKCNRDYMGGRYIEVFREKQAPTARGPPKST------------TPWQGRTLGENEEEEDL 396
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R L ++ + ++ + F Y + + + K G A+V F+ E A +
Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456
Query: 233 AMCK-DKMTIGSRYVELFPSTPDEARRAESRS 263
A + D R + + PST + E+ +
Sbjct: 457 AYAEVDGQVFQGRMLHVLPSTIKKEASQEANA 488
>gi|426360209|ref|XP_004047340.1| PREDICTED: RNA-binding protein 12B isoform 1 [Gorilla gorilla
gorilla]
gi|426360211|ref|XP_004047341.1| PREDICTED: RNA-binding protein 12B isoform 2 [Gorilla gorilla
gorilla]
gi|426360213|ref|XP_004047342.1| PREDICTED: RNA-binding protein 12B isoform 3 [Gorilla gorilla
gorilla]
gi|426360215|ref|XP_004047343.1| PREDICTED: RNA-binding protein 12B isoform 4 [Gorilla gorilla
gorilla]
gi|426360217|ref|XP_004047344.1| PREDICTED: RNA-binding protein 12B isoform 5 [Gorilla gorilla
gorilla]
gi|426360219|ref|XP_004047345.1| PREDICTED: RNA-binding protein 12B isoform 6 [Gorilla gorilla
gorilla]
Length = 1001
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAVKA 457
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFTESVKEEASNSGY 122
Query: 150 -----YDNDF------HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D F HG+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +GSR V+L
Sbjct: 987 NDRPVGSRKVKL 998
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|62648675|ref|XP_232819.3| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
gi|109476143|ref|XP_001053414.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 29/246 (11%)
Query: 33 YFAVSSSASGFQPYGYGGGFPPPPSFPV------VRLRGLPFNCTDIDICKFFAGLDIVD 86
Y + + +GF G G P + P+ + LRGLP+ + D+ FF+GL +
Sbjct: 122 YGSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVDG 181
Query: 87 VLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY--YNAVASE 143
V+L+ + +GR +G+A V FA + L+ R MG R++EV + Q + + AS+
Sbjct: 182 VILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGTASK 241
Query: 144 VNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--------------ILKMRGLPFSVKK 189
D S S ++R ND+ + + + +R L K
Sbjct: 242 GG-----DTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTRSRSPLGFYVHLRNLSLHTNK 296
Query: 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
++ F+D + D+I + D + T A+V F + ++ A+ K + R V +
Sbjct: 297 RDLRYLFRDTDLSNDQIKFLYK-DDRRTRYAFVMFKNQKDYNTALGLHKTVLQYRPVLID 355
Query: 250 PSTPDE 255
P + E
Sbjct: 356 PISRKE 361
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLPF +DI FF GL I D + G+ +GEAF++FA A+ R
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIDMKRSARVGRGRPGPEASGVGNMYHFIDALKEEERYSGY 122
Query: 150 Y-----DNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V LR L + D+ F D+ + + + K+ R + AFV+F AL +
Sbjct: 285 VHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD--QMEHTE 176
+ R V + R++ + YE P +++Y+++
Sbjct: 345 TVLQYRPVLIDPISRKEMVKIIEC---YEKKRPESLEEERPGRVSQKYSEEGFPGSGQKL 401
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LPF V K E+ +FF D+ ++ED I++ G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQAMKA 458
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLPF +I FFK I + +H+ G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD-- 237
+ LPF +EI+ FF YK+I D + I +G GEA V + EA A KD
Sbjct: 771 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEAL-AAVKDLS 829
Query: 238 KMTIGSRYVEL 248
+G R V+L
Sbjct: 830 GRPVGPRKVKL 840
>gi|118722349|ref|NP_976324.2| RNA-binding protein 12B [Homo sapiens]
gi|215273872|sp|Q8IXT5.2|RB12B_HUMAN RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
Length = 1001
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|332830801|ref|XP_003311886.1| PREDICTED: RNA-binding protein 12B isoform 1 [Pan troglodytes]
gi|332830803|ref|XP_003339206.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|332830805|ref|XP_003311887.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pan troglodytes]
gi|332830807|ref|XP_003311889.1| PREDICTED: RNA-binding protein 12B isoform 4 [Pan troglodytes]
gi|332830809|ref|XP_003311890.1| PREDICTED: RNA-binding protein 12B isoform 5 [Pan troglodytes]
gi|410041995|ref|XP_003951348.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|410222496|gb|JAA08467.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410266932|gb|JAA21432.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410301828|gb|JAA29514.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410338931|gb|JAA38412.1| RNA binding motif protein 12B [Pan troglodytes]
Length = 1001
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|297683295|ref|XP_002819319.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pongo abelii]
gi|297683297|ref|XP_002819320.1| PREDICTED: RNA-binding protein 12B isoform 3 [Pongo abelii]
gi|395739892|ref|XP_003777333.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
gi|395739895|ref|XP_003777334.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
Length = 1001
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR----AKRYNDKDQMEH 174
+ R V + R+ +A Y+ GSP R +++Y+ +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-------YEKKRSGSPERDRPGHVSQKYSQEGNSGQ 398
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 399 KLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV--------------------------------------- 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNIIESVKEEASNSGY 122
Query: 141 ASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
S +N + G + N HG+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHSNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|194673041|ref|XP_881008.3| PREDICTED: RNA-binding protein 12B isoform 4 [Bos taurus]
gi|297482529|ref|XP_002692866.1| PREDICTED: RNA-binding protein 12B [Bos taurus]
gi|296480442|tpg|DAA22557.1| TPA: RNA binding motif protein 12-like [Bos taurus]
Length = 984
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + + + + + + I +PP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ K ++ FF+D + ++I + D + T A+V F +
Sbjct: 275 RTCSRSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDP 357
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAVSRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQDYY---------NAVASEVNY-EGIYD---NDFH 155
+ VE+F KR D + V S N+ E I + N +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERPGSGASGVGSLSNFVEAIKEEGSNSGY 122
Query: 156 GSPPPSRAKRYND------------KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE 203
GSP A + + + L +RGLP+ V + ++ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASE--VNYEGIYDNDFHGSPPPSRAKRYNDKDQME--- 173
+ R V Y + V+ E + + Y+ S R + + K E
Sbjct: 346 TVLQYRPV---------YIDPVSREQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYS 396
Query: 174 -HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ +R PF V K E+ +FF D+ + ED I + G GEA V+F S E+A +
Sbjct: 397 GQKLCIYIRNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVK 456
Query: 233 A 233
A
Sbjct: 457 A 457
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 970 NDRPVGPRKVKL 981
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|332238333|ref|XP_003268351.1| PREDICTED: RNA-binding protein 12B isoform 1 [Nomascus leucogenys]
gi|332238335|ref|XP_003268352.1| PREDICTED: RNA-binding protein 12B isoform 2 [Nomascus leucogenys]
gi|332238337|ref|XP_003268353.1| PREDICTED: RNA-binding protein 12B isoform 3 [Nomascus leucogenys]
gi|441647142|ref|XP_004090789.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
gi|441647145|ref|XP_004090790.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
Length = 1001
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR----AKRYNDKDQMEH 174
+ R V + R+ +A Y+ GSP R +++Y+ +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-------YEKKRSGSPERERPGHVSQKYSQEGNSGQ 398
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 399 KLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLKPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAVINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|440906243|gb|ELR56528.1| RNA-binding protein 12B [Bos grunniens mutus]
Length = 977
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + + + + + + I +PP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ K ++ FF+D + ++I + D + T A+V F +
Sbjct: 275 RTCSRSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDP 357
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAVSRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQDYY---------NAVASEVNY-EGIYD---NDFH 155
+ VE+F KR D + V S N+ E I + N +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERPGSGASGVGSLSNFVEAIKEEGSNSGY 122
Query: 156 GSPPPSRAKRYND------------KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE 203
GSP A + + + L +RGLP+ V + ++ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASE--VNYEGIYDNDFHGSPPPSRAKRYNDKDQME--- 173
+ R V Y + V+ E + + Y+ S R + + K E
Sbjct: 346 TVLQYRPV---------YIDPVSREQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYS 396
Query: 174 -HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ +R PF V K E+ +FF D+ + ED I + G GEA V+F S E+A +
Sbjct: 397 GQKLCIYIRNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFTSEEQAVK 456
Query: 233 A 233
A
Sbjct: 457 A 457
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 903 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 962
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 963 NDRPVGPRKVKL 974
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|344273251|ref|XP_003408437.1| PREDICTED: RNA-binding protein 12B-like [Loxodonta africana]
Length = 971
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN-KNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FFAGL + V+ + +GR +G+A V FA I L+
Sbjct: 150 PYLFLRGLPYLVNEDDVRVFFAGLCVDGVIFLKLHDGRNNGDAIVKFASCIDASGGLKCH 209
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNY----------EGIYDNDFHGSPPPSRAKRYN 167
R MG R++EV + Q + + + + GI D +R
Sbjct: 210 RSFMGSRFIEVMQSSEQQWIHCGGKQDDVPMRTEEHSPARGINDRHSRKRSHSKSPRRTR 269
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + H + ++ L + K ++ FF+D + ++I + + K T A V F ++
Sbjct: 270 SRSPVGH--YVHLKNLSLGISKRDLKSFFRDTDLSNEQITFLYK-NEKRTRYALVMFKTL 326
Query: 228 EEAKRAMCKDKMTIGSRYVELFP 250
++ A+ K I R + + P
Sbjct: 327 KDFYTALALHKTIIQYRPIHIDP 349
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 98/239 (41%), Gaps = 64/239 (26%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V+RL GLPF +DI FF GL I D V ++ G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII---GGEVGEAFIIFATDEDARRAISRS 60
Query: 118 RQNMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYE 147
+ YVE+F KR D + AV E +
Sbjct: 61 GGLIKDSYVELFLSSKAEMQKTIEMKRTDRTGRERPESGGSGAGSLSNFAGAVKEEASNS 120
Query: 148 GIYDNDFHG-----------SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 196
D +FH S P+RAK L +RGLP+ V + ++ FF
Sbjct: 121 EYQDAEFHTNGTGRGDLKPRSTRPARAK----------NPYLFLRGLPYLVNEDDVRVFF 170
Query: 197 KDY---KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
+I K+H DG+ G+A V+F S +A + + +GSR++E+ S+
Sbjct: 171 AGLCVDGVIFLKLH-----DGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQSS 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I YVELF S+ E ++
Sbjct: 60 SGGLIKDSYVELFLSSKAEMQKT 82
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + KN + + A V+F AL +
Sbjct: 278 VHLKNLSLGISKRDLKSFFRDTDLSNEQITFLYKNEKRTRYALVMFKTLKDFYTALALHK 337
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R + + R+ + YE P +++Y+++ +
Sbjct: 338 TIIQYRPIHIDPISRKRVLRLMEY---YETKRPGSVEKERPGHVSQKYSEEGYSGQKVCI 394
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 395 YIRNFPFDVTKVEVQKFFADFSLEEDDIYLLYDGKGVGLGEALVKFRSEEQAVKA 449
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF YK+I D + I G GEA V ++ EA A+
Sbjct: 897 IKIMNLPFKANVNEILDFFHGYKVIPDSVSIQYNEKGLPIGEAIVTMINYNEAVAAIKDL 956
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 957 NDRPVGPRKVKL 968
>gi|426235843|ref|XP_004023424.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like [Ovis
aries]
Length = 983
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA I L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 118 RQNMGRRYVEVFR-------------CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK 164
R MG R++EV + K D + GI D F +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGTLIKEGDISMRTEEHTSPRGINDRHFRKRSHSKSPR 274
Query: 165 RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
R + + + ++ L S+ K ++ FF+D + ++I + D + T A+V F
Sbjct: 275 RACSRSPLGF--YVHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMF 331
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFP 250
++++ A+ K + R V + P
Sbjct: 332 KTLKDYNTALGLHKTVLQYRPVYIDP 357
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAVSRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQDYY---------NAVASEVNY-EGIYD---NDFH 155
+ VE+F KR D + V S N+ E I + N +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERPGSGASGVGSLSNFVEAIKEEGSNSGY 122
Query: 156 GSPPPSRAKRYND------------KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE 203
GSP A + + + L +RGLP+ V + ++ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEV 225
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 33/218 (15%)
Query: 24 RQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD 83
R+R +P A S S GF V L+ L + D+ FF D
Sbjct: 265 RKRSHSKSPRRACSRSPLGF----------------YVHLKNLSVSINKRDLRNFFRDTD 308
Query: 84 IVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 141
+ + + + K+ R + AFV+F AL + + R V Y + V+
Sbjct: 309 LTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHKTVLQYRPV---------YIDPVS 359
Query: 142 SE--VNYEGIYDNDFHGSPPPSRAKRYNDKDQME----HTEILKMRGLPFSVKKSEIVQF 195
E + + Y+ S R + + K E + +R PF V K E+ +F
Sbjct: 360 REQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYSGQKLCIYIRNFPFDVTKVEVQKF 419
Query: 196 FKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
F D+ + ED I + G GEA V+F S E+A +A
Sbjct: 420 FADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVKA 457
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 909 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 968
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 969 NDRPVGPRKVKL 980
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 160 PSRAKRYNDKDQMEHTEI-LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG 218
PS+AK+ ++ TE +K+RG+PFSVK+ +I +F + I I G+ TG
Sbjct: 271 PSKAKKTATQEMEPATEFTVKLRGVPFSVKEQQIKEFMTPLR--PAAIRIGKNESGQRTG 328
Query: 219 EAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
YV+ S EE +A+ K+K IG RY+E+F
Sbjct: 329 YVYVDLHSEEEVNKALKKNKDYIGGRYIEVF 359
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 10/200 (5%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG+PF+ + I +F L + + N++G+ +G +V +V A
Sbjct: 284 PATEFTVKLRGVPFSVKEQQIKEFMTPLRPAAIRIGKNESGQRTGYVYVDLHSEEEVNKA 343
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++++ +G RY+EVF+ D+ A + + D +F + K +++ +
Sbjct: 344 LKKNKDYIGGRYIEVFKV---DHSGGKAKKDPKDKEPDFNF-----TRKLKEDEEEEDVS 395
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
T L +R LP++ + +I + F + + + + K G A+V ++ E A A
Sbjct: 396 ETGRLFVRNLPYTCTEEDIRELFSKHGPLSEVLFPIDNLTKKPKGFAFVTYMIPENAVTA 455
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ + D+ R + L PST
Sbjct: 456 LAQLDRHVFQGRMLHLLPST 475
>gi|343470599|emb|CCD16749.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 473
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVE 111
PPS VVR+RG PF+ T+ I +FF+G+ I ++ N+ R +GEAFV V
Sbjct: 368 PPSAYVVRIRGAPFSATEEAIAEFFSGVRIPTQGVHMVYNEQNRLTGEAFVEVESKDDVL 427
Query: 112 FALQRDRQNMGRRYVEVF 129
AL+++ MG RY+EVF
Sbjct: 428 LALRKNGGMMGTRYIEVF 445
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++RG PFS + I +FF +I +H+ + TGEA+VE S ++ A+ K
Sbjct: 373 VVRIRGAPFSATEEAIAEFFSGVRIPTQGVHMVYNEQNRLTGEAFVEVESKDDVLLALRK 432
Query: 237 DKMTIGSRYVELFPSTPDEARR 258
+ +G+RY+E+F S+P +R
Sbjct: 433 NGGMMGTRYIEVFESSPAAMQR 454
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 31/197 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFAL-QR 116
V+RL GLP++ + I FF+ ++ D ++ G G F+ + Q
Sbjct: 16 VLRLHGLPYSIEEDKIRDFFSDFNLADEDAIVFFVEGLHRGTGFIRLRNAGDAPLVIRQL 75
Query: 117 DRQNMGR-RYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
+R+++ RY+E+ ++ A+ + +Q
Sbjct: 76 NRRHIDESRYIEISYSSEEELQRAIGQQ--------------------------EQSSKA 109
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+L++RGLPF ++ F + + +I + DG+ G+A++E S E R
Sbjct: 110 LVLRLRGLPFLSTADDVKAFIESMDGVL-RIDMCRDMDGRCAGDAFIELASEEGVARIKT 168
Query: 236 KDKMTIGSRYVELFPST 252
K +G+RY+E+ PST
Sbjct: 169 LHKKMMGARYIEVLPST 185
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D+ + E T +L++ GLP+S+++ +I FF D+ + D+ I +G G ++ +
Sbjct: 7 DQHREEGTTVLRLHGLPYSIEEDKIRDFFSDFN-LADEDAIVFFVEGLHRGTGFIRLRNA 65
Query: 228 EEAKRAM--CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+A + + SRY+E+ S+ +E +RA + Q
Sbjct: 66 GDAPLVIRQLNRRHIDESRYIEISYSSEEELQRAIGQQEQ 105
>gi|32449726|gb|AAH54081.1| Rbm12b protein, partial [Mus musculus]
Length = 602
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 51 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 110
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTE 176
+ R V + R++ + YE P +++Y+ +
Sbjct: 111 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 167
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 168 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 224
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A KD
Sbjct: 528 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 586
Query: 238 K--MTIGSRYVEL 248
+G R V+L
Sbjct: 587 LSGRPVGPRKVKL 599
>gi|149063465|gb|EDM13788.1| RNA binding motif protein 19 (predicted) [Rattus norvegicus]
Length = 451
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 290 PTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKR 133
L+ +R+ MG RY+EVFR K+
Sbjct: 350 LKCNREYMGGRYIEVFREKQ 369
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+K+RG PF+V + +++F K + I I G TG +V+ S EE K+A+
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAPLKPV--AIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 352
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRS 263
++ +G RY+E+F A R +S
Sbjct: 353 NREYMGGRYIEVFREKQASAARGAPKS 379
>gi|417405481|gb|JAA49451.1| Putative conserved secreted protein precursor [Desmodus rotundus]
Length = 976
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
R MG R++EV + Q + S I SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGSTSKEGDIPMRTEEHSPPRGINDRHFRKRSHSRSPR 274
Query: 178 -----------LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ K ++ FF+D + ++I + D + T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYK-DERRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALGLHKTVLQYRPVLVDP 357
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQDYY---------NAVASEVNY-EGIYD---NDFH 155
+ VE+F KR D+ + V N+ EGI + N +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDHKGRERPGSGASGVGCLSNFVEGIKEEASNSGY 122
Query: 156 GSPPPSRAKRYNDKD-----QMEHTEILK-------MRGLPFSVKKSEIVQFFKDYKIIE 203
GSP A+ + + + T LK +RGLP+ V + ++ FF +
Sbjct: 123 GSPINQDAEFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 204 DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + D+ FF D+ + + + K+ R + AFV+F AL +
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V V R+ + YE +++Y+ + +
Sbjct: 346 TVLQYRPVLVDPISRKQMLKFIEC---YEKKRPASVEKERLGHVSQKYSQEGYSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
MR PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YMRNFPFDVTKVEVQKFFADFSLNEDDIYLLYDDKGVGLGEALVKFTSEEQAMKA 457
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V V+ EA A+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYNEQGLPTGEAIVAMVNYNEAMAAIKDL 961
Query: 237 DKMTIGSRYVEL 248
+ +G R V L
Sbjct: 962 NDRPVGPRKVRL 973
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF ++I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>gi|156401535|ref|XP_001639346.1| predicted protein [Nematostella vectensis]
gi|156226474|gb|EDO47283.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEF 224
N +DQ + I++M GLPF K ++ +FF KI I+ H + + GK TG A+V F
Sbjct: 7 NSQDQEATSTIVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVF 66
Query: 225 VSVEEAKRAMCKDKMTIGSRYVEL 248
S +A +A+ D+ IG RY+EL
Sbjct: 67 KSNNDASKALKMDRSYIGHRYIEL 90
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGE----AFVVFAGPIQVEFA 113
+VR+ GLPF + D+ KFF GL I + LL +K+G+ G+ AFVVF A
Sbjct: 16 TIVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKSNNDASKA 75
Query: 114 LQRDRQNMGRRYVEV 128
L+ DR +G RY+E+
Sbjct: 76 LKMDRSYIGHRYIEL 90
>gi|432101444|gb|ELK29626.1| Cysteine desulfurase, mitochondrial [Myotis davidii]
Length = 815
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 23/206 (11%)
Query: 65 GLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
GL + + LDIV+ + NG+ +GE FV F + AL R +Q M
Sbjct: 379 GLTWPLLLVKKIHLLFYLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYM 438
Query: 122 GRRYVEVFRCKRQ------DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
G R+++V ++ D NY+ R N + + T
Sbjct: 439 GNRFIQVHPITKKGMLEKIDMIRKRLQNFNYD-------------QREMMLNPEGDVSST 485
Query: 176 EIL-KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ + +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 486 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE 545
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAE 260
+ + R + T ++ R E
Sbjct: 546 RLHRKKLNGREAFVHVVTLEDMREIE 571
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 740 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 799
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 800 LNDRPIGSRKVKL 812
>gi|390465839|ref|XP_003733475.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Callithrix jacchus]
Length = 573
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 29/203 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-----VDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
V++LRGLP+ C+ D + I + G S EAFV ++ A
Sbjct: 185 VIKLRGLPWPCSTEDAPNLLSSCTIHHPAAXRAPATLERGGQSSEAFVELGSEDDIKMAX 244
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
+ M +EVF+ R +EV++ P P+ A N + H
Sbjct: 245 GK---AMVHWLIEVFKSHR--------TEVSWV------LRKHPGPNSASSSNYRFVHXH 287
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+GLP K E +QFF + + + D I ++ P ++ E V S E A++ +
Sbjct: 288 ------QGLPSGXHKQETIQFFSELETVPDGITLSVDPR-ESLQEKLVLLASQELAEKVL 340
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K G R +E+F S +E R
Sbjct: 341 XKPKERTGHRNMEVFKSGQEEVR 363
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRG + S+I F + ++HI PDG+ T +A VEF + EEA AM KD+
Sbjct: 457 MRGCHAAETNSDIYNLFSPLNPV--RVHIEMGPDGRLTCKADVEFATWEEAGAAMSKDRA 514
Query: 240 TIGSRYVEL 248
+ RY+EL
Sbjct: 515 NMQHRYIEL 523
>gi|355694925|gb|AER99832.1| heteroproteinous nuclear ribonucleoprotein H3 [Mustela putorius
furo]
Length = 108
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 46 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 103
Query: 236 KDK 238
KDK
Sbjct: 104 KDK 106
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 38 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 85
Query: 98 GEAFVVFAGPIQVEFALQRDRQN 120
GEA V F A+ +D+ N
Sbjct: 86 GEADVEFVTHEDAVAAMSKDKNN 108
>gi|196011702|ref|XP_002115714.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
gi|190581490|gb|EDV21566.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
Length = 341
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RGLPF V + EI +FF K+ + + GK G A+V+F + E+A +AM +
Sbjct: 213 IKLRGLPFDVNEEEIKEFFHPTKL--ENTRLMTNHKGKPNGVAFVDFTNEEDACKAMKSN 270
Query: 238 KMTIGSRYVELFPSTPDEARRAE 260
K I +RY+ELF PDE + E
Sbjct: 271 KDYIRNRYIELF---PDEGKHLE 290
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEF 112
P + ++LRGLPF+ + +I +FF + + L+ N G+ +G AFV F
Sbjct: 206 PAKNIITIKLRGLPFDVNEEEIKEFFHPTKLENTRLMTNHKGKPNGVAFVDFTNEEDACK 265
Query: 113 ALQRDRQNMGRRYVEVF 129
A++ ++ + RY+E+F
Sbjct: 266 AMKSNKDYIRNRYIELF 282
>gi|147898530|ref|NP_001089482.1| uncharacterized protein LOC734533 [Xenopus laevis]
gi|66910772|gb|AAH97695.1| MGC115235 protein [Xenopus laevis]
Length = 668
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 22/204 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVN-KNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ + G+P N T ++I FFAGL + DV+ + +G +G A V FA AL+R
Sbjct: 145 IYVHGMPLNTTKVEIKPFFAGLSVEDVIFLKYPSGLRNGNAIVRFATSGDAHEALKRSGH 204
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
MG V + ++ A G SP S R H E+ +
Sbjct: 205 LMGSTPVSLMLSDETEWTKA-------GGTRARKRESSPVTSSDDRKKSVSHSRH-ELSR 256
Query: 180 MRG-------------LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
R LP+ V K +I F + + + +I GK T E +V+ S
Sbjct: 257 ARARSPYEERFVHLINLPYDVNKRDIKAHFGNLAMKDSQITFLRDWSGKRTREGFVKLTS 316
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+ + + A + SR V++ P
Sbjct: 317 LSQYRDACAQHGRVFCSRLVDVLP 340
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 10/202 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V++L GL + +DI FF+GL+I + G++ GEAF++FA A+ +
Sbjct: 31 VIKLHGLSTEASSLDIRHFFSGLNIPKGYIYITGGQY-GEAFIIFANYEDARQAINYSGR 89
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVN--YEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ V++ + A+ E++ Y +G+P + +D T
Sbjct: 90 PLKNSCVQLSFSSEAEMQQAL-DEISRRYNAANPASTNGTPIYKETGYFKKRD----TSY 144
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + G+P + K EI FF +ED I + P G G A V F + +A A+ +
Sbjct: 145 IYVHGMPLNTTKVEIKPFFAGLS-VEDVIFLKY-PSGLRNGNAIVRFATSGDAHEALKRS 202
Query: 238 KMTIGSRYVELFPSTPDEARRA 259
+GS V L S E +A
Sbjct: 203 GHLMGSTPVSLMLSDETEWTKA 224
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L LP++ DI F L + D L + +G+ + E FV Q A +
Sbjct: 268 VHLINLPYDVNKRDIKAHFGNLAMKDSQITFLRDWSGKRTREGFVKLTSLSQYRDACAQH 327
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+ R V+V +D + +A G + SP K+ + + +
Sbjct: 328 GRVFCSRLVDVLPISERDMLDLIARSEKKPGRDRSSRKDSP-----KKCSQESHSGRGKC 382
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA---KRAM 234
+ +R V K++I FF + + E+ I + +G GEA V F + +EA K+
Sbjct: 383 IYLRNFASDVSKTDIQSFFSGFSLKEEDIFLLYDDNGIGLGEALVLFSTEKEAESTKKLH 442
Query: 235 CK 236
CK
Sbjct: 443 CK 444
>gi|332250675|ref|XP_003274476.1| PREDICTED: probable RNA-binding protein 19 [Nomascus leucogenys]
Length = 997
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G F F+ +V+ A
Sbjct: 327 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFADFSNEEEVKQA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR K + G + +++ +
Sbjct: 387 LKCNREYMGGRYIEVFREKNIPTTKGAPKNTT------KSWQGRI----LRENEEEEDLA 436
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G +V F+ E A +A
Sbjct: 437 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFGFVTFMFPEHAVKA 496
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 497 YSEVDGQVFQGRMLHVLPST 516
>gi|301632397|ref|XP_002945272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Xenopus (Silurana) tropicalis]
Length = 218
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +S+I FF I ++HI DG+ATGEA VEF + E+A AM
Sbjct: 155 HFVHMRGLPFRATESDIANFFSPLTPI--RVHIDVGADGRATGEADVEFATHEDAVAAMS 212
Query: 236 KDKMTI 241
KDK +
Sbjct: 213 KDKNNM 218
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 200 KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
+I+ + I + G++TGEA+V+F S E A+ A+ K K IG RY+E+F S+ E R
Sbjct: 2 RIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEIR 59
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 48 YGGGFPPPPSFP---VVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVV 103
YGGG F V +RGLPF T+ DI FF+ L + V + V +GR +GEA V
Sbjct: 141 YGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVE 200
Query: 104 FAGPIQVEFALQRDRQNM 121
FA A+ +D+ NM
Sbjct: 201 FATHEDAVAAMSKDKNNM 218
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 87 VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 135
L V+ GR +GEAFV FA E AL + ++ +G RY+E+F+ R +
Sbjct: 9 TLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSE 57
>gi|156401533|ref|XP_001639345.1| predicted protein [Nematostella vectensis]
gi|156226473|gb|EDO47282.1| predicted protein [Nematostella vectensis]
Length = 75
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++KM+GLPF +I FF + E IH+A DGKA+G ++ F ++A++AM +
Sbjct: 4 VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR 63
Query: 237 DKMTIGSRYVEL 248
+G RY+EL
Sbjct: 64 TGKYMGKRYIEL 75
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI--VDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V++++GLPF T DI FF GL + D+ L NK+G+ SG +F VF A+ R
Sbjct: 4 VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR 63
Query: 117 DRQNMGRRYVEV 128
+ MG+RY+E+
Sbjct: 64 TGKYMGKRYIEL 75
>gi|300120417|emb|CBK19971.2| unnamed protein product [Blastocystis hominis]
Length = 378
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIED---KIHIACRPDG--KATGEAYVEFVSVEEAK 231
LK+RGLP++ K EI FF ++ D ++ I D + +GEA+V F SVE++
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 232 RAMCKDKMTIGSRYVELFPS-TPDEARRAESRSRQ 265
+ + +G RY+E+FP D RR+E R R+
Sbjct: 318 KGLEYHLKNLGKRYIEIFPLFNKDYYRRSEWRGRR 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI-------VDVLLVNKN-GRFSGEAFVVFAGPIQVE 111
++LRGLP+ T +I FFA L++ + +++ N R SGEAFV F+
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYY 137
L+ +N+G+RY+E+F +DYY
Sbjct: 318 KGLEYHLKNLGKRYIEIFPLFNKDYY 343
>gi|242022416|ref|XP_002431636.1| RNA-binding protein, putative [Pediculus humanus corporis]
gi|212516944|gb|EEB18898.1| RNA-binding protein, putative [Pediculus humanus corporis]
Length = 966
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V ++ LP D DIC FF+ + +V L+++ +G+ SG+AF F+ Q E A ++
Sbjct: 785 VLMKNLPLEANDRDICDFFSDIGLVPNKIHLMLDTSGQPSGDAFCEFSDLNQAEKACTKN 844
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
++G+ V V + + + A+ N + PS + + +
Sbjct: 845 SAHLGKNIVSVTKVHQSEMMEALGVSKNEKNKI---------PSLMESFG-----RPQCV 890
Query: 178 LKMRGLPFSVKKSEIVQFF-KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ + +PF + +I+ FF Y + E I G+ TG+ V F + E+A RA+
Sbjct: 891 VTLENIPFRAEIFDIINFFGWSYNLTESDIFRRYNDKGQPTGDGKVCFKTPEDALRAI 948
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 10/202 (4%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115
P +++ LP + + DI F + + ++L N S A+V F + + AL
Sbjct: 655 PKEAYLQVSDLPSDVEEKDINNLFPNMALDKIILEMSNDGKSKVAYVKFQKAVDAKVALG 714
Query: 116 RDRQNMGRRYVEVFRCKR---QDYYNAVA-SEVNYEGIYDNDFHGSPPPSRAKRYND--- 168
+ +G V + + D+ N ++ Y + + D + + +
Sbjct: 715 TPNRTIGESPVVLTSLPQYAFNDHLNKFKKTKKEYSEVMEVDLSKAEEEEEEEEESSSSS 774
Query: 169 --KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
KD + T +L M+ LP +I FF D ++ +KIH+ G+ +G+A+ EF
Sbjct: 775 IGKDVNKSTCVL-MKNLPLEANDRDICDFFSDIGLVPNKIHLMLDTSGQPSGDAFCEFSD 833
Query: 227 VEEAKRAMCKDKMTIGSRYVEL 248
+ +A++A K+ +G V +
Sbjct: 834 LNQAEKACTKNSAHLGKNIVSV 855
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP+S +I +F+ I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLPWSANSLDIRHYFRGLSIPEGGVHIV----GGEMGDAFIAFSTDEDARQAMML 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
I + L S+ E ++ +RQ
Sbjct: 60 AGGKIKEVQISLMLSSRSEMQKIIEAARQ 88
>gi|118401869|ref|XP_001033254.1| hypothetical protein TTHERM_00419990 [Tetrahymena thermophila]
gi|89287602|gb|EAR85591.1| hypothetical protein TTHERM_00419990 [Tetrahymena thermophila SB210]
Length = 1468
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI-HIACRPDGKATGEAYVEF 224
+ K ++ IL++RGLP+S K EI +FFKD++I++D + + + K TGE+++
Sbjct: 1274 FKSKRVLQQYGILRIRGLPYSCKTKEIYEFFKDFEIVQDGVKRVYNYQEQKQTGESFIIL 1333
Query: 225 VS---VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+ V EAK+ + ++ I RY+E+F S P+E
Sbjct: 1334 KNKDQVREAKQKLHGER--IFQRYIEVFQSDPNE 1365
Score = 40.4 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVD----VLLVNKNGRFSGEAFVVFAGPIQVEFA 113
+ ++R+RGLP++C +I +FF +IV + + + +GE+F++ QV A
Sbjct: 1283 YGILRIRGLPYSCKTKEIYEFFKDFEIVQDGVKRVYNYQEQKQTGESFIILKNKDQVREA 1342
Query: 114 LQR-DRQNMGRRYVEVFRCKRQDYYNAVASEV 144
Q+ + + +RY+EVF+ ++ + + ++
Sbjct: 1343 KQKLHGERIFQRYIEVFQSDPNEFLDYLIDKI 1374
>gi|449016117|dbj|BAM79519.1| similar to heterogeneous nuclear ribonucleoprotein H3, isoform a
[Cyanidioschyzon merolae strain 10D]
Length = 642
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 9 LGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPF 68
LG G G E+ P SS+AS P P VVRLRGLP+
Sbjct: 267 LGIGTPFAGGELLGTASTARAPQSVVIPSSTASAASTVA-----PATPVGSVVRLRGLPW 321
Query: 69 NCTDIDICKFF----------AGLDIVD--------------VLLVNKNGRFSGEAFVVF 104
+ T D+ ++ A +++ V + N GR +GE FV F
Sbjct: 322 SATTRDVAEWIRQPPAKATMGADSSLLEDFIRRPLQVLPGGIVFVYNHQGRKTGEVFVQF 381
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 141
A P L + MG RY+EVF QD +N ++
Sbjct: 382 ASPEDASRCLHKHEDRMGHRYIEVFLSSHQDMWNLLS 418
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 27/111 (24%)
Query: 176 EILKMRGLPFSVKKSEIVQFFK----------DYKIIEDKIHIACRP------------- 212
++++RGLP+S ++ ++ + D ++ED I RP
Sbjct: 312 SVVRLRGLPWSATTRDVAEWIRQPPAKATMGADSSLLEDFIR---RPLQVLPGGIVFVYN 368
Query: 213 -DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESR 262
G+ TGE +V+F S E+A R + K + +G RY+E+F S+ + SR
Sbjct: 369 HQGRKTGEVFVQFASPEDASRCLHKHEDRMGHRYIEVFLSSHQDMWNLLSR 419
>gi|74355899|gb|AAI03655.1| Grsf1 protein, partial [Rattus norvegicus]
Length = 142
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLPF +I+ FF K + +I + GKATGEA V F + E+A AM KD
Sbjct: 65 VHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 122
Query: 238 KMTIGSRYVELF 249
+ + RY+ELF
Sbjct: 123 RSHVQHRYIELF 134
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 60 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 119
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 120 LKDRSHVQHRYIELF 134
>gi|159164096|pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Rna-Binding Protein 19
Length = 91
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ AL+ +R
Sbjct: 12 TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNR 71
Query: 119 QNMGRRYVEVFRCK 132
+ MG RY+EVFR K
Sbjct: 72 EYMGGRYIEVFREK 85
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
HT +K+RG PF+V + +++F K + I I G TG +V+F + EE K+A
Sbjct: 11 HT--VKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQA 66
Query: 234 MCKDKMTIGSRYVELF 249
+ ++ +G RY+E+F
Sbjct: 67 LKCNREYMGGRYIEVF 82
>gi|432117035|gb|ELK37602.1| Heterogeneous nuclear ribonucleoprotein H [Myotis davidii]
Length = 188
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252
++HIA PDG+ TGEA VEF + E+A AM KDK + RYVEL ST
Sbjct: 65 RVHIAISPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELLNST 112
>gi|410923148|ref|XP_003975044.1| PREDICTED: probable RNA-binding protein 19-like [Takifugu rubripes]
Length = 941
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 13/201 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG+PFN ++ I +F L + + N +G +G +V QVE A
Sbjct: 300 PATAFTVKLRGVPFNVKELQIREFMTPLKPAAIRIGKNDSGNRTGYVYVDLHSAEQVEAA 359
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++++ +G RY+EVFR + A + D +F + K +++ +
Sbjct: 360 LKKNKDYIGGRYIEVFRVDNSEK----AKRDKRDREVDRNFTRT-----LKEDEEEEDVA 410
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT-GEAYVEFVSVEEAKR 232
+ L +R LP++ + E+ + F + + + +H K T G A++ ++ E A
Sbjct: 411 ESGRLFVRNLPYTCTEEELKELFAKHGPLSE-LHFPIDSLTKKTKGFAFITYMIPENAVA 469
Query: 233 AMCK-DKMTIGSRYVELFPST 252
A+ + D R + L PST
Sbjct: 470 ALAQLDGHVFQGRMLHLLPST 490
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG+PF+VK+ +I +F K I I G TG YV+ S E+ + A+ K+
Sbjct: 306 VKLRGVPFNVKELQIREFMTPLK--PAAIRIGKNDSGNRTGYVYVDLHSAEQVEAALKKN 363
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
K IG RY+E+F E + + R R+
Sbjct: 364 KDYIGGRYIEVFRVDNSEKAKRDKRDRE 391
>gi|7739447|gb|AAF68851.1|AF132363_2 hnRNP 2H9D [Homo sapiens]
gi|7739438|gb|AAF68845.1| hnRNP 2H9D [Homo sapiens]
gi|119574674|gb|EAW54289.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_f
[Homo sapiens]
Length = 145
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 64 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 121
Query: 236 KDK 238
KDK
Sbjct: 122 KDK 124
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 56 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 103
Query: 98 GEAFVVFAGPIQVEFALQRDRQNM 121
GEA V F A+ +D+ NM
Sbjct: 104 GEADVEFVTHEDAVAAMSKDKNNM 127
>gi|328715828|ref|XP_001946054.2| PREDICTED: hypothetical protein LOC100165002 [Acyrthosiphon pisum]
Length = 1148
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ L + GLP +V ++I QFF D ++ DKIHI G+ TGE+Y EF + ++A A+
Sbjct: 895 SNCLYVYGLPTTVTNTDITQFFSD-SVLPDKIHIMLSKFGRPTGESYCEFGTAQQASAAI 953
Query: 235 CKDKMTIGSRYVELFP 250
K++ +G V + P
Sbjct: 954 VKNQTFMGQNLVCVEP 969
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ ++I Q+F+ I E +HI G G+ ++ F + E+A++AM
Sbjct: 4 IIRLQNLPWAANAADIRQYFQGLSIPEGGVHIV----GGEKGDVFISFSTDEDARQAMLS 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D I + L S+ +E ++ +RQ
Sbjct: 60 DGGCIKDVQIRLLLSSRNEMQKVIDAARQ 88
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 59 PVVR-----LRGLPFNCTDIDICKFFAGLDIVDVL--LVNKNGRFSGEAFVVFAGPIQVE 111
PVVR + GLP T+ DI +FF+ + D + +++K GR +GE++ F Q
Sbjct: 891 PVVRSNCLYVYGLPTTVTNTDITQFFSDSVLPDKIHIMLSKFGRPTGESYCEFGTAQQAS 950
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYYNAVA 141
A+ +++ MG+ V V R A+
Sbjct: 951 AAIVKNQTFMGQNLVCVEPINRSLMIQAIT 980
>gi|428672286|gb|EKX73200.1| conserved hypothetical protein [Babesia equi]
Length = 900
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAG-PIQVEFALQRDRQN 120
L+GLPF T+ +I + DIV ++L+ N+ G F+G+A+V A I+ A + D +
Sbjct: 167 LKGLPFETTEDEIFNWLKNYDIVSIILIKNEKGLFTGDAYVRCANIAIRDTVAKEMDNKE 226
Query: 121 MGRRYVEVFRCKR----QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-MEHT 175
+G RY+++FR + YY+ E D P R K+ K+Q M H
Sbjct: 227 LGVRYIQIFRVNENAYLEYYYSGYRKEPAKRNFVDISLLVVPESKRKKQMESKEQKMYHI 286
Query: 176 EILK 179
+ +K
Sbjct: 287 DEIK 290
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV---EEAKRA 233
+L ++GLPF + EI + K+Y I+ I + G TG+AYV ++ + +
Sbjct: 164 LLYLKGLPFETTEDEIFNWLKNYDIVS--IILIKNEKGLFTGDAYVRCANIAIRDTVAKE 221
Query: 234 MCKDKMTIGSRYVELF 249
M D +G RY+++F
Sbjct: 222 M--DNKELGVRYIQIF 235
>gi|7739449|gb|AAF68852.1|AF132364_1 hnRNP 2H9E [Homo sapiens]
gi|7739439|gb|AAF68846.1| hnRNP 2H9E [Homo sapiens]
Length = 139
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 58 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 115
Query: 236 KDK 238
KDK
Sbjct: 116 KDK 118
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 50 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 97
Query: 98 GEAFVVFAGPIQVEFALQRDRQNM 121
GEA V F A+ +D+ NM
Sbjct: 98 GEADVEFVTHEDAVAAMSKDKNNM 121
>gi|348528569|ref|XP_003451789.1| PREDICTED: probable RNA-binding protein 19 [Oreochromis niloticus]
Length = 926
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 13/211 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG+PFN + I +F L V + N++G +G +V +VE A
Sbjct: 285 PTTEFTVKLRGVPFNVKEKQIREFMTPLKPAAVRIGKNESGNRTGYVYVDLHSEEEVEKA 344
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++++ +G RY+EVFR D + E D +F + K +++ +
Sbjct: 345 LKKNKDYIGGRYIEVFRV---DAFAGKNKRDGKEKETDRNF-----SRKLKEDEEEEDVS 396
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + +I + F + + D + + G A+V ++ E A A
Sbjct: 397 ESGRLFIRNLPYTCTEEDIKELFSKHGPLSDVLFPIDTLTKRPKGFAFVTYMIPENAVTA 456
Query: 234 MCK-DKMTIGSRYVELFPSTPDEARRAESRS 263
+ + D R + L PST A++ +S S
Sbjct: 457 LAQLDGHIFQGRMLHLLPST---AKKEKSDS 484
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN + + +F L V + N +GR SG +V +VE A
Sbjct: 286 PTTEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERA 345
Query: 114 LQRDRQNMGRRYVEVFRCK--RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L+ D+ MG RY+EVFR + D +A SE+ + + K +++
Sbjct: 346 LRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRE-----------LKDDEEEED 394
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + L +R +P++ + ++ + F + + + + K G A+V ++ E A
Sbjct: 395 VAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 454
Query: 232 RAMCK-DKMTIGSRYVELFPS 251
A+ + D T R + + S
Sbjct: 455 SALAQLDGHTFQGRVLHVMAS 475
>gi|149052455|gb|EDM04272.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Rattus
norvegicus]
Length = 96
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVE 127
++DR+ MG RYVE
Sbjct: 72 KKDRETMGHRYVE 84
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++K+RGLP+S E+ +FF D KI I +G+ +GEA+VE S +E K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 235 CKDKMTIGSRYVE 247
KD+ T+G RYVE
Sbjct: 72 KKDRETMGHRYVE 84
>gi|365812823|pdb|2LMI|A Chain A, Nmr Structure Of The Protein Bc040485 From Homo Sapiens
Length = 107
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++ +GLP+S +++ FF D +I E+ IH DGK G+A +E S ++ ++A+
Sbjct: 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 72
Query: 235 CKDKMTIGSRYVELF 249
K +M +G RYVE++
Sbjct: 73 EKHRMYMGQRYVEVY 87
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 72
Query: 115 QRDRQNMGRRYVEVFRCKRQD 135
++ R MG+RYVEV+ +D
Sbjct: 73 EKHRMYMGQRYVEVYEINNED 93
>gi|190337757|gb|AAI63877.1| RNA binding motif protein 19 [Danio rerio]
Length = 926
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN + + +F L V + N +GR SG +V +VE A
Sbjct: 285 PTTEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERA 344
Query: 114 LQRDRQNMGRRYVEVFRCK--RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L+ D+ MG RY+EVFR + D +A SE+ + + K +++
Sbjct: 345 LRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRE-----------LKDDEEEED 393
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + L +R +P++ + ++ + F + + + + K G A+V ++ E A
Sbjct: 394 VAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 453
Query: 232 RAMCK-DKMTIGSRYVELFPS 251
A+ + D T R + + S
Sbjct: 454 SALAQLDGHTFQGRVLHVMAS 474
>gi|328909179|gb|AEB61257.1| heterogeneous nuclear ribonucleoprotein F-like protein, partial
[Equus caballus]
Length = 113
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+ + RY+EL
Sbjct: 1 ENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 58
Query: 249 FPSTPDEARRAESRSR 264
F ++ A S+
Sbjct: 59 FLNSTTGASNGAYSSQ 74
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 74 DICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR NM RY+E+F
Sbjct: 3 DIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 62
Query: 133 RQDYYNAVASEVNYEGI 149
N S +G+
Sbjct: 63 TTGASNGAYSSQMMQGM 79
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 290 PTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 349
Query: 114 LQRDRQNMGRRYVEVFRCKR 133
L+ +R+ MG RY+EVFR K+
Sbjct: 350 LKCNREYMGGRYIEVFREKQ 369
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG PF+V + +++F K + I I G TG +V+ S EE K+A+ +
Sbjct: 296 VKLRGAPFNVTEKNVLEFLAPLKPV--AIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 353
Query: 238 KMTIGSRYVELFPSTPDEARRAESRS 263
+ +G RY+E+F A R +S
Sbjct: 354 REYMGGRYIEVFREKQASAARGAPKS 379
>gi|350592780|ref|XP_003483535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Sus
scrofa]
Length = 161
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF-P 250
+ QFF I ++HI DG+ATGEA VEFV+ E+A AM KDK + RY+ELF
Sbjct: 26 LQQFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLN 83
Query: 251 STP 253
STP
Sbjct: 84 STP 86
>gi|221129839|ref|XP_002156393.1| PREDICTED: epithelial splicing regulatory protein 2-like [Hydra
magnipapillata]
Length = 489
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D + ++ + +R LP+ V EI+QFF+++ +I D + I DG+ +G+A + F
Sbjct: 405 DVNDIKMGRAVGIRNLPYEVTPDEILQFFRNFPVIADSVRIHYLEDGRCSGDAIISFRGS 464
Query: 228 EEAKRAM-CKDKMTIGSRYVELF 249
+A+ A+ ++ +G R VELF
Sbjct: 465 RDARDAVQALNRKNLGRRKVELF 487
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-DVLLVN--KNGRFSGEAFVVFAGPIQVEFALQR 116
V +R LP+ T +I +FF ++ D + ++ ++GR SG+A + F G A+Q
Sbjct: 414 AVGIRNLPYEVTPDEILQFFRNFPVIADSVRIHYLEDGRCSGDAIISFRGSRDARDAVQA 473
Query: 117 -DRQNMGRRYVEVF 129
+R+N+GRR VE+F
Sbjct: 474 LNRKNLGRRKVELF 487
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+L++ LP + +I + FKD+ + IH+ DGK G A++ F + +A +
Sbjct: 9 VLRVDRLPLNATPGDIRRHFKDHGARPEDIHLVLEADGKHNGSAFLTFTNQGDAAHGLNA 68
Query: 237 DKMTIGSRYVELFPSTPDE 255
+ + + + + S P E
Sbjct: 69 NDSLLKDKRLAVNESNPAE 87
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 66 LPFNCTDIDICKFFAGLDIVDVLLV-NKNGRF----SGEAFVVFAGPIQVEFALQRDRQN 120
LP+N T++DI FF + D+ L+ NK G++ +G A V F L+ D +
Sbjct: 232 LPYNATEVDIQDFFRPVLTRDIFLIRNKVGKYIGKPNGNAVVEFFSESDAREVLKCDGKR 291
Query: 121 MGRRYVEVFRCKRQDYYNAV 140
G+R V R ++++ +A+
Sbjct: 292 FGQRNAVVQRARKEEIISAI 311
>gi|38707995|ref|NP_944597.1| probable RNA-binding protein 19 [Danio rerio]
gi|32450902|gb|AAP82506.1| nil per os [Danio rerio]
Length = 926
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN + + +F L V + N +GR SG +V +VE A
Sbjct: 285 PTTEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERA 344
Query: 114 LQRDRQNMGRRYVEVFRCK--RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L+ D+ MG RY+EVFR + D ++ SE+ + + K +++
Sbjct: 345 LRLDKDYMGGRYIEVFRANNFKNDRRSSKRSEMEKNFVRE-----------LKDDEEEED 393
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + L +R +P++ + ++ + F + + + + K G A+V ++ E A
Sbjct: 394 VAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 453
Query: 232 RAMCK-DKMTIGSRYVELFPS 251
A+ + D T R + + S
Sbjct: 454 SALAQLDGQTFQGRVLHVMAS 474
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG PF+VK+ ++ +F K + I A DG+ +G YV+ S E +RA+ D
Sbjct: 291 VKLRGAPFNVKEQQVKEFMMPLKPV--AIRFAKNSDGRNSGYVYVDLRSEAEVERALRLD 348
Query: 238 KMTIGSRYVELFPSTP-DEARRAESRS 263
K +G RY+E+F + RR+ RS
Sbjct: 349 KDYMGGRYIEVFRANNFKNDRRSSKRS 375
>gi|300122335|emb|CBK22907.2| unnamed protein product [Blastocystis hominis]
Length = 546
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIED---KIHIACRPDGKA--TGEAYVEFVSVEEAKR 232
LK+RGLP++ K EI FF ++ D ++ I D K +GEA+V F SVE++ +
Sbjct: 436 LKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSAK 495
Query: 233 AMCKDKMTIGSRYVELFP 250
+ +G RY+E+FP
Sbjct: 496 GLEYHLKNLGKRYIEIFP 513
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDI--------VDVLLVNKNGRFSGEAFVVFAGPIQVE 111
++LRGLP+ T +I FFA L++ V+ + R SGEAFV F+
Sbjct: 435 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSA 494
Query: 112 FALQRDRQNMGRRYVEVFRCKRQDYY 137
L+ +N+G+RY+E+F +DYY
Sbjct: 495 KGLEYHLKNLGKRYIEIFPLFNKDYY 520
>gi|357631743|gb|EHJ79212.1| hypothetical protein KGM_15640 [Danaus plexippus]
Length = 895
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 11/198 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFA-GLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDR 118
V +R P + + D+ +FF +D + ++N N GR +G FV F + ALQR
Sbjct: 320 VAIRNAPNHTSYGDVRRFFPFMIDKRGIKMINDNMGRRTGNIFVRFCDSRAKQLALQRKP 379
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ V V Y A S + Y DND S ++K Q +L
Sbjct: 380 NELKGAQVIVESLDDDTYDAATDSFLPYR--EDNDEEESTLTVSDTGDDNKTQFS---VL 434
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-CKD 237
K+ LP V++ +I++ F D+ ++ ++ + CR + T AYVEFV ++AK A+ KD
Sbjct: 435 KLIDLPHFVQEQDIMKAFSDFSLLSIQL-VDCRHN--RTKNAYVEFVKPDDAKIALERKD 491
Query: 238 KMTIGSRYVELFPSTPDE 255
G R+ + P T +E
Sbjct: 492 SYVFGRRHPAITPLTDEE 509
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
E + + M+GLP IV F D + +IH+ +G +G+ + EF + +EA++
Sbjct: 622 ESLDCVLMKGLPREATDRTIVNFLSDTGAVPARIHLMLDNNGLPSGDCFCEFRTSQEARQ 681
Query: 233 AMCK 236
A K
Sbjct: 682 ASTK 685
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+L M +PF +I+ FF D+++ +D + G+ TG+A V F + +AKRA
Sbjct: 820 VLSMENVPFRATIDDILAFFSDFELTQDDVIRRYNERGQPTGDARVSFRTPFDAKRAQSS 879
Query: 237 DKM-TIGSRYVEL 248
+ +I R + L
Sbjct: 880 HNLSSIFDRRITL 892
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR- 116
F V++L LP + DI K F+ ++ + LV+ + A+V F P + AL+R
Sbjct: 431 FSVLKLIDLPHFVQEQDIMKAFSDFSLLSIQLVDCRHNRTKNAYVEFVKPDDAKIALERK 490
Query: 117 DRQNMGRRYVEVFRCKRQDYYN 138
D GRR+ + ++Y N
Sbjct: 491 DSYVFGRRHPAITPLTDEEYKN 512
>gi|47226530|emb|CAG08546.1| unnamed protein product [Tetraodon nigroviridis]
Length = 944
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG+PFN + I +F L + + N +G +G +V QVE A
Sbjct: 301 PATGFTVKLRGVPFNVKEQQIREFMTPLKPAAIRIGKNDSGNRTGYVYVDLHSEEQVEKA 360
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L++++ +G RY+EVFR D A + D F K +++ +
Sbjct: 361 LKKNKDYIGGRYIEVFRV---DNSGGKARRDKRDKDIDRSF-----TRNLKEGEEEEDVA 412
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + E+ + F + + + K+ G A++ ++ E A A
Sbjct: 413 ESGRLFVRNLPYTCTEEELKELFTKHGPLSEMHFPIDSLTKKSKGFAFITYMIPENAVAA 472
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ + D R + L PST
Sbjct: 473 LAQLDGHIFQGRMLHLLPST 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RG+PF+VK+ +I +F K I I G TG YV+ S E+ ++A+ K+
Sbjct: 307 VKLRGVPFNVKEQQIREFMTPLK--PAAIRIGKNDSGNRTGYVYVDLHSEEQVEKALKKN 364
Query: 238 KMTIGSRYVELF--PSTPDEARR 258
K IG RY+E+F ++ +ARR
Sbjct: 365 KDYIGGRYIEVFRVDNSGGKARR 387
>gi|91086239|ref|XP_972538.1| PREDICTED: similar to Squamous cell carcinoma antigen recognized by
T-cells 3 (SART-3) (mSART-3) (Tumor-rejection antigen
SART3) [Tribolium castaneum]
Length = 758
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 39/183 (21%)
Query: 77 KFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY 136
KFF + V+++ V+K G+ +V FA V AL RDR+ + R + + CK
Sbjct: 555 KFFPNCENVEIV-VDKRGKSRCYGYVQFALEESVMAALARDRELLDGRPIFISNCK---- 609
Query: 137 YNAVASEVNYEGIYDNDFHGSPPPSRAKR-----YNDKDQMEHTEILKMRGLPFSVKKSE 191
P+R +R Y+++ + T L ++GLP+ + E
Sbjct: 610 -----------------------PNREERKAGFKYSNEPE---TNKLFVKGLPYDKSQEE 643
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250
I F+ + + + CR DGK G AYVEF AK+AM K D MT+G + +
Sbjct: 644 IEAIFRPFGA--KTVRLVCRRDGKPKGLAYVEFEDDASAKKAMEKTDGMTVGDFTISVAI 701
Query: 251 STP 253
S P
Sbjct: 702 SAP 704
>gi|270009865|gb|EFA06313.1| hypothetical protein TcasGA2_TC009182 [Tribolium castaneum]
Length = 748
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 39/183 (21%)
Query: 77 KFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY 136
KFF + V+++ V+K G+ +V FA V AL RDR+ + R + + CK
Sbjct: 545 KFFPNCENVEIV-VDKRGKSRCYGYVQFALEESVMAALARDRELLDGRPIFISNCK---- 599
Query: 137 YNAVASEVNYEGIYDNDFHGSPPPSRAKR-----YNDKDQMEHTEILKMRGLPFSVKKSE 191
P+R +R Y+++ + T L ++GLP+ + E
Sbjct: 600 -----------------------PNREERKAGFKYSNEPE---TNKLFVKGLPYDKSQEE 633
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250
I F+ + + + CR DGK G AYVEF AK+AM K D MT+G + +
Sbjct: 634 IEAIFRPFGA--KTVRLVCRRDGKPKGLAYVEFEDDASAKKAMEKTDGMTVGDFTISVAI 691
Query: 251 STP 253
S P
Sbjct: 692 SAP 694
>gi|440797920|gb|ELR18994.1| fibronectin type III domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 740
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VV++RGLP+ T DI +FFA LDI + +N +GR +G+ FV FA ALQR
Sbjct: 681 VVKMRGLPWEVTPEDIARFFATLDIAPEGVSIALNFDGRPTGDGFVCFASADHATLALQR 740
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++KMRGLP+ V +I +FF I + + IA DG+ TG+ +V F S + A A+ +
Sbjct: 681 VVKMRGLPWEVTPEDIARFFATLDIAPEGVSIALNFDGRPTGDGFVCFASADHATLALQR 740
>gi|60416093|gb|AAH90711.1| Rbm19 protein, partial [Danio rerio]
Length = 802
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN + + +F L V + N +GR SG +V +VE A
Sbjct: 286 PTTEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERA 345
Query: 114 LQRDRQNMGRRYVEVFRCK--RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
L+ D+ MG RY+EVFR + D +A SE+ + + K +++
Sbjct: 346 LRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRE-----------LKDDEEEED 394
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ + L +R +P++ + ++ + F + + + + K G A+V ++ E A
Sbjct: 395 VAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 454
Query: 232 RAMCK-DKMTIGSRYVELFPS 251
A+ + D T R + + S
Sbjct: 455 SALAQLDGHTFQGRVLHVMAS 475
>gi|71026370|ref|XP_762861.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349813|gb|EAN30578.1| hypothetical protein TP03_0737 [Theileria parva]
Length = 968
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 52 FPPPPSF------PVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVF 104
P PP ++ L+G+PF T+ D+ + DIV V+ + N+NG F+G+A+V
Sbjct: 166 LPTPPGIYSPSYDALLYLKGIPFKATEKDVFDWLKNYDIVSVIFIKNENGFFTGDAYVRC 225
Query: 105 AGPIQVEFALQRDRQN--MGRRYVEVFRCKRQDY 136
IQV + ++ +N +G RY++VFR Y
Sbjct: 226 VN-IQVRDKVAKEMENKRIGARYIQVFRVSENAY 258
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE-EAKRAMC 235
+L ++G+PF + ++ + K+Y I+ + +G TG+AYV V+++ K A
Sbjct: 180 LLYLKGIPFKATEKDVFDWLKNYDIVS--VIFIKNENGFFTGDAYVRCVNIQVRDKVAKE 237
Query: 236 KDKMTIGSRYVELF 249
+ IG+RY+++F
Sbjct: 238 MENKRIGARYIQVF 251
>gi|326512460|dbj|BAJ99585.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN---KNGRFSGEAFVVFAGPIQVEFALQR 116
V+++G P T+ +I +FF GL + + + + NGR E FV F P V AL++
Sbjct: 245 TVKVKGQPAETTEDEIREFFEGLSVGKISMHSLEIPNGRTVTEVFVTFNDPADVNAALEK 304
Query: 117 DRQNMGRRYVEVFRCKRQD 135
DRQ +G R+V + R ++
Sbjct: 305 DRQKIGSRWVSIKRSSAKE 323
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVE-FALQRDR 118
VV L +PF T+ + + F G DV + + G+A++ + + + F
Sbjct: 164 VVVLPKIPFAFTESQLAEVFPGYQFADVSVGH------GKAYIKLSPAQEADKFLADAAS 217
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+G+ V F+ + +D D H P +
Sbjct: 218 ATIGKYSVNAFKSIQ----------------FDMDKHKKTP---------------VNTV 246
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK 238
K++G P + EI +FF+ + + +H P+G+ E +V F + A+ KD+
Sbjct: 247 KVKGQPAETTEDEIREFFEGLSVGKISMHSLEIPNGRTVTEVFVTFNDPADVNAALEKDR 306
Query: 239 MTIGSRYVELFPSTPDEARRAESRSR 264
IGSR+V + S+ E R+ R R
Sbjct: 307 QKIGSRWVSIKRSSAKEVRKLIQRKR 332
>gi|256073174|ref|XP_002572907.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan) [Schistosoma mansoni]
gi|350645108|emb|CCD60169.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan), putative [Schistosoma mansoni]
Length = 923
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP S S I +FF I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLPISANASNIRRFFSGLSIPEGGVHIV----GGTEGDAFIAFATDEDARKAMLL 59
Query: 237 DKMTIGSRYVELFPST 252
D+ TI V LF S+
Sbjct: 60 DRQTINGASVRLFLSS 75
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++RL+ LP + +I +FF+GL I + V +V G G+AF+ FA A+ D
Sbjct: 4 IIRLQNLPISANASNIRRFFSGLSIPEGGVHIV---GGTEGDAFIAFATDEDARKAMLLD 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
RQ + V +F + + + + S
Sbjct: 61 RQTINGASVRLFLSSKAEMQSIIES 85
>gi|402594752|gb|EJW88678.1| hypothetical protein WUBG_00416 [Wuchereria bancrofti]
Length = 154
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP++ T +DI +FF L+ V++ L N+ R SG+A V F+ + AL R++
Sbjct: 90 VFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVTFSTMAEAREALSRNKN 149
Query: 120 NMGRR 124
NMG R
Sbjct: 150 NMGTR 154
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D+ + T + MRGLP+SV +I +FF+ +E I + + + +G+A V F ++
Sbjct: 80 DEAMYDPTVKVFMRGLPYSVTTLDIEEFFRPLNCVE--IKLGYNEERRLSGDALVTFSTM 137
Query: 228 EEAKRAMCKDKMTIGSR 244
EA+ A+ ++K +G+R
Sbjct: 138 AEAREALSRNKNNMGTR 154
>gi|340382975|ref|XP_003389993.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 866
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 93/195 (47%), Gaps = 15/195 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+R+RGLP++ ++ + KFF+ + + ++ LL + R SG AFV ++ A++R++
Sbjct: 248 IRMRGLPYDASEKHVHKFFSPIQLSNIRLLKDDRERCSGLAFVDVMSETDLKEAMKRNKG 307
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
MGRRY+E+ V + + + + P + + + + +
Sbjct: 308 RMGRRYIEL----------VVDTGSKEKTVKEKS---KRPWEEKEDEETVESIADSGRIF 354
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
+R LP++ + E+ + F++Y + + + + G + G YV F+ E A +A + D
Sbjct: 355 IRNLPYTTTEEELTELFEEYGQLSEINLLVDKSTGSSIGLGYVTFMFPEHAVKAFSELDG 414
Query: 239 MTIGSRYVELFPSTP 253
R + L PS P
Sbjct: 415 QVFQGRLLHLLPSKP 429
Score = 44.7 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
++MRGLP+ + + +FF ++ I + + +G A+V+ +S + K AM ++
Sbjct: 248 IRMRGLPYDASEKHVHKFFSPIQL--SNIRLLKDDRERCSGLAFVDVMSETDLKEAMKRN 305
Query: 238 KMTIGSRYVELFPSTPDEARRAESRSRQ 265
K +G RY+EL T + + + +S++
Sbjct: 306 KGRMGRRYIELVVDTGSKEKTVKEKSKR 333
>gi|49903191|gb|AAH76429.1| Rbm19 protein, partial [Danio rerio]
Length = 275
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN + + +F L V + N +GR SG +V +VE A
Sbjct: 179 PTTEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERA 238
Query: 114 LQRDRQNMGRRYVEVFRC 131
L+ D+ MG RY+EVFR
Sbjct: 239 LRLDKDYMGGRYIEVFRA 256
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+K+RG PF+VK+ ++ +F K + I A DG+ +G YV+ S E +RA+
Sbjct: 184 TVKLRGAPFNVKEQQVKEFMMPLKPV--AIRFAKNSDGRNSGYVYVDLRSEAEVERALRL 241
Query: 237 DKMTIGSRYVELF 249
DK +G RY+E+F
Sbjct: 242 DKDYMGGRYIEVF 254
>gi|307102453|gb|EFN50727.1| hypothetical protein CHLNCDRAFT_142539 [Chlorella variabilis]
Length = 515
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG---LDIVDVLLVNKNG-RFSGEAFVVFAGPIQVEFALQ 115
+V LRGLP + D+ F G L + LV G R EAFV F+ + + A +
Sbjct: 9 IVVLRGLPTKASKEDVLAFLEGCGPLQQEQIHLVKPGGGRSHAEAFVAFSNMEEAQRACE 68
Query: 116 RDRQ----NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171
D+ G RYV V A+A ++ + + SR++R N K +
Sbjct: 69 NDKNFFSPKFGERYVRV----------AIAEDMVPGNLPTLGAAVAAKASRSRRTNQKVE 118
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++K+ GLP + E++Q F ++ +I D + EA+VEF E A
Sbjct: 119 ----SVVKVTGLPHGITPPEVLQLFWGWQAKVTGTYIRSV-DHEKRLEAFVEFEVREHAT 173
Query: 232 RAMCK 236
+A+ +
Sbjct: 174 QAVSQ 178
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++I+ +RGLP K +++ F + + +++IH+ G++ EA+V F ++EEA+RA
Sbjct: 7 SKIVVLRGLPTKASKEDVLAFLEGCGPLQQEQIHLVKPGGGRSHAEAFVAFSNMEEAQRA 66
Query: 234 MCKDKM----TIGSRYVEL 248
DK G RYV +
Sbjct: 67 CENDKNFFSPKFGERYVRV 85
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 43/197 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVNKNGRFSGEAFVVFAGPIQV-EFALQR 116
VV++ GLP T ++ + F G + + + + EAFV F +V E A Q
Sbjct: 120 VVKVTGLPHGITPPEVLQLFWGWQAKVTGTYIRSVDHEKRLEAFVEF----EVREHATQA 175
Query: 117 DRQNMGRRY--------VEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYND 168
Q G + + + + ++ VA+E +GI
Sbjct: 176 VSQRHGTTITMAAGQFSLGMQKATKGEWDAVVAAEQGRDGI------------------- 216
Query: 169 KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
++++GLP +++ F Y+I +H+ + + + A V F + E
Sbjct: 217 ---------VRLKGLPTKATTGDVMAFLDGYRIKLGGVHVQPFSENRHSKIALVVFETAE 267
Query: 229 EAKRAMCKDKMTIGSRY 245
EA RA+ KD+ G +
Sbjct: 268 EATRALEKDRQPFGEAF 284
>gi|156082065|ref|XP_001608525.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148801096|gb|EDL42501.1| RNA binding protein, putative [Plasmodium vivax]
Length = 181
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 9/119 (7%)
Query: 139 AVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI----LKMRGLPFSVKKSEIVQ 194
+ S + G + H SP S + ++D ++ ++ LK+RGLPF + EI
Sbjct: 35 TLVSTAHMRGTPLREGHHSPTQSVRRFFSDYQHVQEEKVNLPRLKLRGLPFDASEEEIKT 94
Query: 195 FFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK--DKMTIGSRYVELF 249
FFK++++ + IHI K TG+A+V F EEA++A C+ ++ + +RY+E++
Sbjct: 95 FFKNFQLAKVGYPIHIIRGVKNKPTGQAHVYFDDEEEARKA-CETLNRKFLRNRYIEIY 152
>gi|449477354|ref|XP_002196178.2| PREDICTED: probable RNA-binding protein 19 [Taeniopygia guttata]
Length = 944
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 15/195 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+LRG P + T+ I +FF L V + + K G+ SG FV +++ AL+R ++
Sbjct: 298 VKLRGAPSSITEEKIREFFFPLKPVAIRMGKKAQGKNSGYIFVDLKSEAEMQRALKRKKE 357
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+G R VEV RC R V ++ ++ P + +++ + + L
Sbjct: 358 FLGGRCVEVSRC-RNTPKEPVPAKPEHQ----------PWQRTLRDDEEEEDLSESGRLF 406
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAMCK-D 237
+R LPF+ + ++ + F Y + + IH + K G A++ ++ E A +A+ + D
Sbjct: 407 VRNLPFTSTEEDLEKIFSKYGPLSE-IHFPIDKLTKKPKGFAFITYMIPEHAVKALAELD 465
Query: 238 KMTIGSRYVELFPST 252
R + L PST
Sbjct: 466 GQVFQGRMMHLLPST 480
>gi|74096255|ref|NP_001027771.1| swan [Ciona intestinalis]
gi|31324620|gb|AAP48572.1| swan [Ciona intestinalis]
Length = 1075
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+ PFNCT+ + KFF+ I + V K GR SG FV F+ A RD
Sbjct: 630 LVRIANSPFNCTEEAVRKFFSDFSIPHDGIQFVYKGGRRSGHIFVKFSNADDAVKAALRD 689
Query: 118 RQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
Q M R V V + + ++ ++ ++ E + F +P + K + +
Sbjct: 690 NQRMMGRNVLVGQSSVAQMKEIHHRISGEHWFP-----QFSVTPDIKEQGLLSKKIKENN 744
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+ + L S++ ++++ ED + + G GEA VE S E+ RA
Sbjct: 745 LTCVCIGNLHSRTITSDVKNCLLNHELSEDGVTVLMDKSGLCIGEACVELRSTEDCIRAT 804
Query: 235 CKD-KMTIGSRYVELFPSTPDE 255
D + I + ++++P + E
Sbjct: 805 DLDSNVKILNNSIQVWPLSKQE 826
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
++++ GR +G + F + E ALQ+DR+ +G R++ + + + + S + E
Sbjct: 96 FMLDEKGRNNGTCLIKFKTVVDKEDALQKDRKYLGGRFIRITTSSERQWL--LVSTQSCE 153
Query: 148 GIYDNDFHG-----SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII 202
I + + + KR +++ +++RGLP + + FF I+
Sbjct: 154 TIRPGESRKRSKTITSSENTPKRSRALSPLKNENCVEVRGLPQNADYHIMSGFFSGLNIV 213
Query: 203 EDKIHIACRPDGK-ATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + I DGK G A+VEF + + K A+ +D I + V +
Sbjct: 214 DGGLFIEN--DGKICKGRAFVEFAAYADYKNALVRDGDMIDGKQVRVI 259
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRF-SGEAFVVFAGPIQVEFALQRDR 118
V +RGLP N + FF+GL+IVD L + +G+ G AFV FA + AL RD
Sbjct: 189 VEVRGLPQNADYHIMSGFFSGLNIVDGGLFIENDGKICKGRAFVEFAAYADYKNALVRDG 248
Query: 119 QNMGRRYVEVFRCKRQDYYNAV 140
+ + V V RQ+ + +
Sbjct: 249 DMIDGKQVRVIGLSRQNMIDQI 270
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++ LP + +I QFF +I + +HI G G A++ F + E+A++AM +
Sbjct: 6 VIRLKHLPLAAGTFDIRQFFSGLRIPDGGVHII----GGTDGTAFILFSTDEDARQAMMR 61
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D + + ++L S+ E + S++
Sbjct: 62 DGQHVRATAIKLMLSSHTEMKTVIEHSQR 90
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+KM L + + + ++++FF + + D + + GK TG+ + F +E A+ A+ +
Sbjct: 1001 VKMSNLSYDITREDLLEFFSGFDPLPDSVQLMYSQGGKPTGDGVISFPHIEPARAAIAQ 1059
>gi|298710382|emb|CBJ25446.1| G-rich sequence factor 1 [Ectocarpus siliculosus]
Length = 503
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 31/194 (15%)
Query: 63 LRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
L+G P + I + G V+V +V R G AF+ F P AL D N+
Sbjct: 216 LQGFP-ESEVVAIFEEAVGAAPVEVKIVENPNRSRGLAFIKFEMPDLARAALHLDGTNIQ 274
Query: 123 RRYVEV-FRCKRQDYYNAVASEVNYEGIYDNDFH---GSPPPSRAKRYNDKDQMEHTEIL 178
++V+V +Q N+F GS PP + D+M ++
Sbjct: 275 NQWVDVSLHVMKQS---------------SNEFRLGTGSQPPFGP---DVPDEM----VV 312
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA----TGEAYVEFVSVEEAKRAM 234
++GLPFS+ + EI F +++I ED+I P TG A + F S E RA+
Sbjct: 313 MLKGLPFSLLEDEIKAFILNHEIAEDEIVAINVPKFNETQFNTGIAMIHFKSDESVARAL 372
Query: 235 CKDKMTIGSRYVEL 248
IG R+V++
Sbjct: 373 ELKGTHIGERWVDV 386
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 52/179 (29%)
Query: 46 YGYGGGFPPP--PSFP---VVRLRGLPFNCTDIDICKFFAGLDI-------VDVLLVNKN 93
+ G G PP P P VV L+GLPF+ + +I F +I ++V N+
Sbjct: 292 FRLGTGSQPPFGPDVPDEMVVMLKGLPFSLLEDEIKAFILNHEIAEDEIVAINVPKFNET 351
Query: 94 GRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND 153
+G A + F V AL+ ++G R+V+V R ++ N
Sbjct: 352 QFNTGIAMIHFKSDESVARALELKGTHIGERWVDVSRWNERNKPN--------------- 396
Query: 154 FHGSPPPSRAKRYNDKDQMEHTE---------------ILKMRGLPFSVKKSEIVQFFK 197
+R + +DQME T ++ + GLPF + E+++F +
Sbjct: 397 ----------QRKSHRDQMEETRSAVKTSLKEKHPSLPVVSISGLPFHKTEEEVIEFLE 445
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 157 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--- 213
+PPP+ + E ++++ GLPF++ E+ Q+F++ K+ + P+
Sbjct: 110 TPPPAESP--------EPLYLIQVDGLPFTMATEELEQWFEEAGCSPPKVTVPLWPERSI 161
Query: 214 --GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
G+ G+AY+ F E+ ++A+ +IG R++ +
Sbjct: 162 RAGQNKGKAYLHFSGEEDVRKALSLSGRSIGERWINI 198
>gi|340382973|ref|XP_003389992.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 660
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
+R+RGLP++ ++ + KFF+ + + ++ LL + R SG AFV ++ A++R++
Sbjct: 272 TIRMRGLPYDASEKHVHKFFSPIQLSNIRLLKDDRERCSGLAFVDVMSKTDLKEAMKRNK 331
Query: 119 QNMGRRYVEV 128
MGRRY+E+
Sbjct: 332 GRMGRRYIEL 341
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
HT ++MRGLP+ + + +FF ++ I + + +G A+V+ +S + K A
Sbjct: 271 HT--IRMRGLPYDASEKHVHKFFSPIQL--SNIRLLKDDRERCSGLAFVDVMSKTDLKEA 326
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
M ++K +G RY+EL T + + + +S++
Sbjct: 327 MKRNKGRMGRRYIELVVDTGSKEKTVKEKSKR 358
>gi|124802582|ref|XP_001347519.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23495101|gb|AAN35432.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 160
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRA-M 234
LK+RGLPF + EI FF+D+++ + IHI K TG AYV F EEA+ A
Sbjct: 57 LKLRGLPFDASEEEIKNFFRDFQLTKQAYPIHIIKGIKNKPTGHAYVYFDDEEEARNACQ 116
Query: 235 CKDKMTIGSRYVELF 249
++ I R+VE++
Sbjct: 117 AMNRKYIRDRFVEIY 131
>gi|226482640|emb|CAX73919.1| RNA-binding protein 12 [Schistosoma japonicum]
Length = 922
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP S + I +FF I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIV----GGTEGDAFIAFATDEDARKAMLL 59
Query: 237 DKMTIGSRYVELFPST 252
D+ TI V LF S+
Sbjct: 60 DRQTINGASVRLFLSS 75
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++RL+ LP + +I +FF+GL I + V +V G G+AF+ FA A+ D
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIV---GGTEGDAFIAFATDEDARKAMLLD 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
RQ + V +F + + + + S
Sbjct: 61 RQTINGASVRLFLSSKAEMQSIIES 85
>gi|47226485|emb|CAG08501.1| unnamed protein product [Tetraodon nigroviridis]
Length = 909
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 94 GRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDND 153
G F G ++ F V AL+ DRQ M R V V C ++
Sbjct: 688 GTFKGYCYIQFESVASVAEALKLDRQEMENRPVFVSPCVDKN------------------ 729
Query: 154 FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213
P + +YN ME +I + GLPFS K ++ + K Y I+D + +
Sbjct: 730 ---KNPDFKVFKYN--TSMEKQKIF-ISGLPFSCTKEQLKEVCKSYGTIKD-VRLVTYRS 782
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253
GK G AYVEF A +A+ K D M I + + S P
Sbjct: 783 GKPKGLAYVEFTEETHASQAVLKMDGMVIDGNTISVAISNP 823
>gi|321463278|gb|EFX74295.1| hypothetical protein DAPPUDRAFT_307392 [Daphnia pulex]
Length = 929
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP+S ++I QFF I E +HI G G+A++ F + E+A++ M
Sbjct: 4 IIRLQNLPWSANAADIRQFFHGLSIPEGGVHIV----GGQLGDAFIAFSTDEDARQGMAS 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D + V+L+ S+ E ++ +RQ
Sbjct: 60 DGGMLKDSRVKLYLSSRTEMQKIIEETRQ 88
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+ GLP S + +I FF D +I I I + G AY +F S++EA+RA+ K+
Sbjct: 641 ITGLPPSALERDIGDFFSDVGVIPQIIEIVYDEERMPVGNAYCQFASMQEAERALDKNGG 700
Query: 240 TIGSRYVEL-FPSTPDEA 256
+G V + PD A
Sbjct: 701 FMGGHTVSVTLVENPDAA 718
>gi|194864880|ref|XP_001971153.1| GG14589 [Drosophila erecta]
gi|190652936|gb|EDV50179.1| GG14589 [Drosophila erecta]
Length = 995
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 35/225 (15%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDI----VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+R+ G+ N + DI K+F GL I + +++VN G +G A+V F+ + ALQR
Sbjct: 360 IRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMVN--GSRTGVAYVEFSRVSSAQKALQR 417
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAV--ASEVNYEGIYDNDFHGS------------PPPSR 162
+ R V++ ++ A A+ ++G ++ H PPP
Sbjct: 418 NNTMFRDRLVQIAPVGDDEFELAEERANRQLHDGSRNHSNHNGGERGERGGGGAIPPPKP 477
Query: 163 AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFK-DYKIIEDKIHIACRPDGKATGEAY 221
T +L + LP + + +I++ F Y I++ I ++ P+ + A+
Sbjct: 478 V-----------TNVLYIEDLPQTTTEQDIMKMFSASYTIVD--ILLSPSPNNRRESVAF 524
Query: 222 VEFVSVEEAKRAMC-KDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
V F EA+ A+ K IG R + + PS+ ++ + A+ + R+
Sbjct: 525 VLFAREAEAESALQDTTKHYIGFRQLRVSPSSEEDMQNAKEKQRR 569
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFF-AGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQV 110
PP P V+ + LP T+ DI K F A IVD+LL + N R AFV+FA +
Sbjct: 474 PPKPVTNVLYIEDLPQTTTEQDIMKMFSASYTIVDILLSPSPNNRRESVAFVLFAREAEA 533
Query: 111 EFALQRDRQN-MGRRYVEVFRCKRQDYYNA 139
E ALQ ++ +G R + V +D NA
Sbjct: 534 ESALQDTTKHYIGFRQLRVSPSSEEDMQNA 563
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I FF I E +HI G G+A++ F + E+A+ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D+ + V L S+ E ++ +R+
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETARK 88
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++ MR +PF + +I++FF DYK+ D I +GK TG+ V F S EA+ A
Sbjct: 920 VVAMRNVPFKAELKDILRFFGDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSA 976
>gi|358393451|gb|EHK42852.1| hypothetical protein TRIATDRAFT_78790 [Trichoderma atroviride IMI
206040]
Length = 398
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKR 232
I+K++ +PF+ ++E++ F ++ KI+ D +HI T +AYVEFVS+E+A R
Sbjct: 47 IIKLKNIPFATTRAEVIAFLGRNSKILNDSDEGVHIIMDKVTSKTMDAYVEFVSLEDAMR 106
Query: 233 AMCKDKMTIGS-RYVEL 248
A+ + ++ + + RY L
Sbjct: 107 AVERHRLNVAAGRYARL 123
>gi|76154254|gb|AAX25744.2| SJCHGC00921 protein [Schistosoma japonicum]
Length = 805
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP S + I +FF I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIV----GGTEGDAFIAFATDEDARKAMLL 59
Query: 237 DKMTIGSRYVELFPST 252
D+ TI V LF S+
Sbjct: 60 DRQTINGASVRLFLSS 75
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++RL+ LP + +I +FF+GL I + V +V G G+AF+ FA A+ D
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIV---GGTEGDAFIAFATDEDARKAMLLD 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
RQ + V +F + + + + S
Sbjct: 61 RQTINGASVRLFLSSKAEMQSIIES 85
>gi|405971235|gb|EKC36082.1| RNA-binding protein 12 [Crassostrea gigas]
Length = 487
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNG-----------RFSGEAFVVFAGPI 108
+++++GL N +D+ +FF G +I KNG R +G AF+ +
Sbjct: 75 IIQMKGLGINGKKVDVVEFFKGCEIA------KNGEGIHIEYDIKNRCTGTAFIEMSTLS 128
Query: 109 QVEFALQRDRQNMGRRYVEV-----------FRCKRQDYYNAVASEVNYEGIYDNDFHGS 157
+ AL D + R + V R+ N + E + + N +
Sbjct: 129 DFQTALTFDGKMFNSRLIRVSAGSLRDVEQLHERMREMMANKQSEEPDKRPLLPNPTNIE 188
Query: 158 PPPSRAKRYNDKDQME-HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA 216
P A ++++ + + ++GLP V +I + F I + IHI +G+
Sbjct: 189 PNRILAPDGEYRNRITTNLHCVHLQGLPPHVVAKDIAKLFDGIDIAQRGIHIVHDSNGRP 248
Query: 217 TGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
GEA+VEF E ++A+ I V L P
Sbjct: 249 LGEAFVEFSDNSECEKALNMPDRCIADHEVSLKP 282
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 126 VEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE-ILKMRGLP 184
+E+ +C +D+ N + + +P +KR + ++ I++M+GL
Sbjct: 32 IEILKCSNKDFDNCDPA---------SKLQQTPEQEDSKRLKVGVALRTSQYIIQMKGLG 82
Query: 185 FSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG 242
+ KK ++V+FFK +I ++ IHI + TG A++E ++ + + A+ D
Sbjct: 83 INGKKVDVVEFFKGCEIAKNGEGIHIEYDIKNRCTGTAFIEMSTLSDFQTALTFDGKMFN 142
Query: 243 SRYVELFPSTPDEARRAESRSRQ 265
SR + + + + + R R+
Sbjct: 143 SRLIRVSAGSLRDVEQLHERMRE 165
>gi|70945353|ref|XP_742505.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521527|emb|CAH76146.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 139
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDK--IHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+K+RGLPF V + EI FF +K+ K IHI K TG AYV F EEA+ A C
Sbjct: 36 IKLRGLPFDVSEDEIKNFFSSFKLSNQKNPIHIIKGIKDKPTGHAYVYFDDSEEARNA-C 94
Query: 236 K--DKMTIGSRYVELF 249
+ ++ + +RY+E++
Sbjct: 95 QHLNRKFLRNRYIEIY 110
>gi|302121706|gb|ADK92872.1| hnRNP [Hypericum perforatum]
Length = 477
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 65 GLPFNCTDIDICKFFAGL-DIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
G+ ++ + + ++F D+V+ +++ GR G F+VFA P V + +++ N+
Sbjct: 12 GISWDTNEERLKEYFGSFGDVVEAVIMKDRTTGRARGFGFIVFADP-SVADRVIKEKHNI 70
Query: 122 GRRYVEVFRCKRQD-----YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R VE R +D N+V+S HGSP P +HT
Sbjct: 71 DGRMVEAKRAIPRDDQNIPSRNSVSS-----------MHGSPGP------------DHTR 107
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ + GL +V +S+ +F + II D + + + G ++ + S E + + K
Sbjct: 108 KIFVGGLASTVTESDFKNYFDQFGIIIDAVVMYDHNTQRPRGFGFITYDSDEAVDKVLTK 167
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRS 263
+ + VE+ + P E +RS
Sbjct: 168 TFHELNGKMVEVKRAVPKELSPGPTRS 194
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 63 LRGLPFNCTDIDICKFFAGL-DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
+ GLP++ T+ ++ + FAG ++ + +NGR SG AFV FA E AL D Q+
Sbjct: 253 IAGLPWSATEDEVKEHFAGCGEVTGARIPLQNGRSSGTAFVTFATSEAAEAALAMDGQDF 312
Query: 122 GRRYVEVFRCKRQDYYN 138
G R++++ ++++ ++
Sbjct: 313 GGRWMKIRTAEKKNMFD 329
>gi|76155549|gb|AAX26841.2| SJCHGC06966 protein [Schistosoma japonicum]
Length = 106
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR---------------PDGKATGEAY 221
++++RGLPFS +I+ FFK + +++ P+G++ GEA+
Sbjct: 9 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVSTDCTIRGGKRGIYFPQGPNGRSNGEAF 68
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
+E S ++ ++AM +G RY+E +PD
Sbjct: 69 IELDSKDDKEKAMAHHNEHMGRRYIEGNLQSPDN 102
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 18/86 (20%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL------------------VNKNGRFSGEAF 101
VVR+RGLPF+ DI FF G + V NGR +GEAF
Sbjct: 9 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVSTDCTIRGGKRGIYFPQGPNGRSNGEAF 68
Query: 102 VVFAGPIQVEFALQRDRQNMGRRYVE 127
+ E A+ ++MGRRY+E
Sbjct: 69 IELDSKDDKEKAMAHHNEHMGRRYIE 94
>gi|356501604|ref|XP_003519614.1| PREDICTED: uncharacterized protein LOC100814628 [Glycine max]
Length = 477
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 63 LRGLPFNCTDIDICKFFA--GLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ G+ ++ D + ++F G I V++ ++ GR G FVVFA P E + D+
Sbjct: 10 IGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIM-DKH 68
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ R VE + +D + + HGSP P R K+ +
Sbjct: 69 IIDGRTVEAKKAVPRDDQQTINRQT-------GSIHGSPSPGRTKK------------IF 109
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+ GLP ++ +S+ ++F + I D + + + G ++ + S E R + K
Sbjct: 110 VGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH 169
Query: 240 TIGSRYVELFPSTPDEARRAESRS 263
+ + VE+ + P E +RS
Sbjct: 170 ELNGKMVEVKRAVPKELSPGPTRS 193
>gi|347968945|ref|XP_001237407.3| AGAP002959-PA [Anopheles gambiae str. PEST]
gi|333467769|gb|EAU77058.3| AGAP002959-PA [Anopheles gambiae str. PEST]
Length = 913
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + L F T+ DI + F L I + LV + +G+ G ++ A +V AL DR+
Sbjct: 671 VFVSNLSFEVTETDIREIFPDLAIESIELVASSSGKSRGFGYMQLASAEEVPKALSFDRR 730
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ R V + R +R ++ E ++
Sbjct: 731 PLNGRPVFISNVARDK------------------------TTRPHQFKYSSSFEPNKLF- 765
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
++GLPF++ + E+ + F+ + I+D I I C GK+ G AY+E+ + AK A+ K D+
Sbjct: 766 IKGLPFNLGQEELRRLFEPFGSIKD-IRIVCFRSGKSKGLAYLEYETETSAKNAVLKMDQ 824
Query: 239 MTIGSRYVELFPSTP 253
I + + S+P
Sbjct: 825 HVIDGFTITVAISSP 839
>gi|17510849|ref|NP_492671.1| Protein Y106G6D.7 [Caenorhabditis elegans]
gi|5824657|emb|CAA20980.2| Protein Y106G6D.7 [Caenorhabditis elegans]
Length = 948
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP + S++ FF KI + +HI G GE +V F S ++A+ AM K
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGAVHII----GGDEGEVFVGFSSDDDARLAMTK 59
Query: 237 DKMTIGSRYVELFPSTPDE 255
D++ I V LF S+ E
Sbjct: 60 DRLMIHGAEVRLFLSSKSE 78
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++RL+ LP D+ FF GL I D V+ G GE FV F+ A+ +DR
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDG-AVHIIGGDEGEVFVGFSSDDDARLAMTKDRL 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVN 145
+ V +F + + + +A+ N
Sbjct: 63 MIHGAEVRLFLSSKSEQNSVIAARKN 88
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+L G P V ++V+FF DY+ + I I DG TGE + + E A+RA
Sbjct: 873 VLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQENARRA 929
>gi|91094045|ref|XP_968644.1| PREDICTED: similar to CG7879 CG7879-PA [Tribolium castaneum]
gi|270003124|gb|EEZ99571.1| hypothetical protein TcasGA2_TC001555 [Tribolium castaneum]
Length = 779
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
F + + LP + DI K F+ ++ + L K R A+V F + + AL+ +
Sbjct: 451 FSCLTVDDLPTYVKEQDILKLFSPRPLLALFLTPK-PRGGHIAYVKFGSVEEAKKALEEN 509
Query: 118 -RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ + V + C +++ N ++ + D + SP P Q++ T+
Sbjct: 510 INHKVEGKPVTIKPCDDREFEN-----ISQQHNVDLECKPSPLP----------QLD-TD 553
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+ + LP EI FF D + KIH+ G TG+A+ EF + E+A +A+ K
Sbjct: 554 CINLTRLPLQTNNIEIADFFSDIGVRPTKIHLMSNRMG-FTGQAFCEFKTKEDAAQALKK 612
Query: 237 DKMTIGSRYVELFP 250
D + G V + P
Sbjct: 613 DNSSFGPNIVSVQP 626
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP+S +I QFF I E +HI G G+A++ F + E+A++A +
Sbjct: 4 IIRLQNLPWSANALDIRQFFHGLSIPEGGVHIV----GGEQGDAFIAFSTDEDARQAFAR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
+ I + L S+ E ++ +R
Sbjct: 60 NNGKIKEIQISLMLSSRTEMQKVIEAAR 87
>gi|428185555|gb|EKX54407.1| hypothetical protein GUITHDRAFT_99887 [Guillardia theta CCMP2712]
Length = 1076
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 56 PSFPV----VRLRGLPFNCTDIDICKFFA---GLDIVDV-LLVNKNGRFSGEAFVVFAGP 107
P FP V RGLPF+ T+ DI FF L+ DV +L++ R SGEA V
Sbjct: 681 PVFPSSSYEVTCRGLPFSSTEDDIVTFFGECKNLEAGDVSILLDARQRPSGEATVKLRSV 740
Query: 108 IQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYN 167
+ AL +R MG RYVEVF +++ A E + + DF PP + + Y+
Sbjct: 741 EDLHAALSCNRNMMGERYVEVFEHRKRRAEEEEAVEESIKKRARKDF-AMPPRTGGRHYD 799
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 181 RGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
RGLPFS + +IV FF + K +E + I + +GEA V+ SVE+ A+ ++
Sbjct: 693 RGLPFSSTEDDIVTFFGECKNLEAGDVSILLDARQRPSGEATVKLRSVEDLHAALSCNRN 752
Query: 240 TIGSRYVELF 249
+G RYVE+F
Sbjct: 753 MMGERYVEVF 762
>gi|211827892|gb|AAH27810.2| Rbm12 protein [Mus musculus]
Length = 368
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 293 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 352
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 353 LNDRPIGSRKVKL 365
>gi|392346882|ref|XP_003749658.1| PREDICTED: RNA-binding protein 12-like [Rattus norvegicus]
Length = 475
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 400 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 459
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 460 LNDRPIGSRKVKL 472
>gi|358385024|gb|EHK22621.1| hypothetical protein TRIVIDRAFT_29142 [Trichoderma virens Gv29-8]
Length = 398
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKR 232
I+K+R +PFS ++E++ F ++ K++ D +HI T +AYVEFVS+E+A R
Sbjct: 47 IIKLRNIPFSSTRAEVIAFLGRNSKVLNDTDEGVHIIMDKVTSKTMDAYVEFVSLEDAMR 106
Query: 233 AMCKDKMTIGS-RYVEL 248
A+ + + + + RY L
Sbjct: 107 AVDRHRANVAAGRYSRL 123
>gi|426247328|ref|XP_004017438.1| PREDICTED: probable RNA-binding protein 19 [Ovis aries]
Length = 916
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 74 DICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
++ +F A L V + +V N +G +G FV F+ +V AL+ +R+ MG RY+EVFR +
Sbjct: 267 NVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRER 326
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--------ILKMRGLP 184
N A++ +P + AK + + EH E L +R LP
Sbjct: 327 -----NVPAAK-------------APLKNGAKPWQGRTLGEHEEEEDLADSGRLFVRNLP 368
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243
++ + ++ + F Y + + + K G A+V F+ E A +A + D
Sbjct: 369 YTSSEEDLEKLFSRYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 428
Query: 244 RYVELFPST 252
R + + PST
Sbjct: 429 RMLHVLPST 437
>gi|350036612|dbj|GAA34386.1| RNA-binding protein 12 [Clonorchis sinensis]
Length = 964
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP S S I +FF I E +HI G G+A++ F + E+A++AM
Sbjct: 4 IIRLQNLPMSANASNIRRFFGGLAIPEGGVHIV----GGTDGDAFIAFATDEDARKAMLL 59
Query: 237 DKMTIGSRYVELF 249
D+ I V LF
Sbjct: 60 DRQAINGAPVRLF 72
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
++RL+ LP + +I +FF GL I + V +V G G+AF+ FA A+ D
Sbjct: 4 IIRLQNLPMSANASNIRRFFGGLAIPEGGVHIV---GGTDGDAFIAFATDEDARKAMLLD 60
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS 142
RQ + V +F + + + + S
Sbjct: 61 RQAINGAPVRLFLSSKTEMQSVIES 85
>gi|12856908|dbj|BAB30825.1| unnamed protein product [Mus musculus]
Length = 408
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 333 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 392
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 393 LNDRPIGSRKVKL 405
>gi|356552729|ref|XP_003544715.1| PREDICTED: uncharacterized protein LOC100788515 [Glycine max]
Length = 478
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 63 LRGLPFNCTDIDICKFFA--GLDIVDVLLVNKN-GRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ G+ ++ D + ++F G I V++ ++ GR G FVVFA P E + D+
Sbjct: 10 IGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIM-DKH 68
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ R VE + +D + + HGSP P R K+ +
Sbjct: 69 IIDGRTVEAKKAVPRDDQQTINRQ-------SGSIHGSPSPGRTKK------------IF 109
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+ GLP ++ +S+ ++F + I D + + + G ++ + S E R + K
Sbjct: 110 VGGLPSTITESDFKKYFDQFGTIADVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH 169
Query: 240 TIGSRYVELFPSTPDEARRAESRS 263
+ + VE+ + P E +RS
Sbjct: 170 ELNGKMVEVKRAVPKELSPGPTRS 193
>gi|303275530|ref|XP_003057059.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461411|gb|EEH58704.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 386
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 13/94 (13%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI----------ACRPDGKATGEAYVEFVS 226
IL++RG+P K+++V FF EDK+ I P +TGEA+VEF S
Sbjct: 285 ILRVRGMPPEATKADVVNFFYGMGAEEDKVKIIIAPGMANLAGSHPGAMSTGEAFVEF-S 343
Query: 227 VEEA--KRAMCKDKMTIGSRYVELFPSTPDEARR 258
++A ++A KD+ +G + V +F S+ +E +R
Sbjct: 344 GDDANIQQAALKDRAVLGGKPVSVFRSSLEEVQR 377
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGL----DIVDVL----LVNKNGRF-----SGEAFVVFAG 106
++R+RG+P T D+ FF G+ D V ++ + N G +GEAFV F+G
Sbjct: 285 ILRVRGMPPEATKADVVNFFYGMGAEEDKVKIIIAPGMANLAGSHPGAMSTGEAFVEFSG 344
Query: 107 -PIQVEFALQRDRQNMGRRYVEVFRCKRQDY 136
++ A +DR +G + V VFR ++
Sbjct: 345 DDANIQQAALKDRAVLGGKPVSVFRSSLEEV 375
>gi|312371631|gb|EFR19765.1| hypothetical protein AND_21838 [Anopheles darlingi]
Length = 823
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + L F T+ +I F L I + L+++ +G+ G +++ + V AL DR+
Sbjct: 576 VFISNLSFEATEQEIRSAFPELSIESIELVLSSSGKSRGFGYMLLSSESDVAQALSFDRR 635
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ R + + R +R ++ +E ++
Sbjct: 636 PLAGRPMFISNVARDK------------------------ANRQHQFKYASSVEPNKLF- 670
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK 238
++GLPF + K E+ + F+ + I D I I C +G++ G AY+E+ S AKRA+ K D+
Sbjct: 671 IKGLPFELGKDELQRLFEPFGTIRD-IRIVCFRNGRSKGLAYLEYESEAAAKRAVLKMDQ 729
Query: 239 MTIGSRYVELFPSTP 253
I + + S P
Sbjct: 730 HVIDGFTITVAISAP 744
>gi|401395936|ref|XP_003879715.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
gi|325114122|emb|CBZ49680.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
Length = 246
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEE 229
E L++RGL + +I QFF+ Y + E+ I + R DG+ TG A V F + +E
Sbjct: 136 EKPATLRLRGLSYRATTDDIAQFFEGYSLAGPPEEAIQLHRRMDGRPTGWASVYFETEQE 195
Query: 230 AKRA-MCKDKMTIGSRYVELF 249
A+RA K + + RY+E+F
Sbjct: 196 ARRAKQDKHRSYLHGRYIEIF 216
>gi|395730677|ref|XP_003775769.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Pongo abelii]
Length = 352
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 165 RYNDKDQMEHTEIL---KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
+Y D + H+ GLP+ KS+I F + ++H P + TG+A
Sbjct: 218 KYGDSEVTGHSTTAIASGXEGLPYKATKSDIYNLFSPPNLA--RVHTEMGPHERVTGKAD 275
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSR 264
V+F + EEA A +D++++ RY+ELF + A SR
Sbjct: 276 VKFATQEEAVAATSRDRVSMWHRYMELFLNLTTGASNGAYSSR 318
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV-----DVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VVRL G + C+ D + + + ++ GR SGEAFV ++ AL
Sbjct: 12 VVRLHGPSWPCSVEDAQDVLSNCTMPHRAAGEFHPHHRXGRQSGEAFVELGXEENIKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG R + VF+ +EV++ + H P + + Y
Sbjct: 72 EKDRESMGHRRIAVFKSH--------XTEVSW--VLKK--HRGPNSAGSANYGF------ 113
Query: 175 TEILKMRGLPFSVKKSEIVQFF 196
L++RGL K EIVQFF
Sbjct: 114 --ALELRGLASGCXKEEIVQFF 133
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 65 GLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGR 123
GLP+ T DI F+ ++ V + + R +G+A V FA + A RDR +M
Sbjct: 238 GLPYKATKSDIYNLFSPPNLARVHTEMGPHERVTGKADVKFATQEEAVAATSRDRVSMWH 297
Query: 124 RYVEVF 129
RY+E+F
Sbjct: 298 RYMELF 303
>gi|221054023|ref|XP_002261759.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808219|emb|CAQ38922.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 163
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKI--IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
LK+RGLPF V + EI FFK++++ + IHI K TG+A+V F EEA++A C
Sbjct: 60 LKLRGLPFDVGEEEIKSFFKNFQLAKVGYPIHIIRGVKNKPTGQAHVYFDDEEEARKA-C 118
Query: 236 K--DKMTIGSRYVELF 249
+ ++ + +RY+E++
Sbjct: 119 ETLNRKFLRNRYIEIY 134
>gi|3970860|dbj|BAA34794.1| HRIHFB2091 [Homo sapiens]
Length = 376
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 301 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 360
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 361 LNDRPIGSRKVKL 373
>gi|322694151|gb|EFY85988.1| hypothetical protein MAC_07940 [Metarhizium acridum CQMa 102]
Length = 582
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKR 232
++K++ +PF+ K+SE++ F ++ KI+ D +HI T +AYVEFV++++A +
Sbjct: 212 VVKLKNIPFATKRSEVIAFLGRNSKILNDADEPVHIIMERVTSKTMDAYVEFVTLDDANK 271
Query: 233 AMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A+ K + I S V P E + S
Sbjct: 272 AVEKHQQNILSGRVSRLGDRPVEVELSSQES 302
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 83 DIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 141
+IVDV LV K GR G FV F+ P + AL DRQ + R + V
Sbjct: 713 NIVDVRLVRKPTGRSRGYGFVEFSSPEAAQKALALDRQPVLNRPMYV------------- 759
Query: 142 SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI 201
+ + D D P PSR +D ++ + L +R L ++ ++V F+ +
Sbjct: 760 -SPSVDKPKDGD---GPAPSRYA----QDGVD-PKTLFVRNLSSLCRRDDLVTTFEKFAK 810
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTI 241
+ D + + DG+ TG AYVEF + E+AK A+ D +
Sbjct: 811 VVD-VRMTRHRDGRFTGRAYVEFANEEDAKLALAADGTVV 849
>gi|443682493|gb|ELT87074.1| hypothetical protein CAPTEDRAFT_222846 [Capitella teleta]
Length = 841
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 63 LRGLPFNCTDIDICKFFAGL-DIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQN 120
+ L ++ + + + F+ L ++++V LV N G+ G A++ F + + AL DR
Sbjct: 608 VSNLSYDVDEQRLQEIFSKLGEVINVRLVTNFKGQSKGFAYIEFKDELLAQKALTLDRMM 667
Query: 121 MGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKM 180
+ R + V C + S PS+ ++ +E ++ +
Sbjct: 668 VNNRPMFVSECNK-----------------------SRDPSQ--KFKFATSLEKNKLF-V 701
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKM 239
+GLP + + + FK Y I+D + + +G + G AYVEFVS EA +A+ K D +
Sbjct: 702 KGLPRTTGRDAVENIFKQYGAIKD-VRLVTYRNGVSKGLAYVEFVSESEAAQAVMKADGL 760
Query: 240 TIGSRYVELFPSTPDEARRA 259
+G + + S P E +++
Sbjct: 761 MVGDHEISVAISNPPERQQS 780
>gi|322703613|gb|EFY95219.1| hypothetical protein MAA_09295 [Metarhizium anisopliae ARSEF 23]
Length = 595
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKR 232
++K++ +PF+ K+SE++ F ++ KI+ D +HI T +AYVEFV++++A +
Sbjct: 244 VVKLKNIPFATKRSEVIAFLGRNSKILNDADEPVHIIMERVTSKTMDAYVEFVTLDDANK 303
Query: 233 AMCKDKMTI 241
A+ K + I
Sbjct: 304 AVEKHQQNI 312
>gi|85001419|ref|XP_955428.1| RNA-binding protein [Theileria annulata strain Ankara]
gi|65303574|emb|CAI75952.1| RNA-binding protein, putative [Theileria annulata]
Length = 959
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 52 FPPPPSF------PVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFV-- 102
P PP ++ ++G+PF T+ D+ + D+V V+ + N+NG F+G+A+V
Sbjct: 166 LPSPPGIYSPSYDALLYIKGIPFKATEKDVFDWLKNYDVVSVVFIKNENGFFTGDAYVRC 225
Query: 103 VFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY 136
V G ++ + A + + + +G RY++VFR Y
Sbjct: 226 VNIG-VRDKVAKEMENKTIGGRYIQVFRVSENAY 258
Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 157 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA 216
SPP + Y+ +L ++G+PF + ++ + K+Y ++ + +G
Sbjct: 168 SPPGIYSPSYD--------ALLYIKGIPFKATEKDVFDWLKNYDVVS--VVFIKNENGFF 217
Query: 217 TGEAYVEFVSVE-EAKRAMCKDKMTIGSRYVELF 249
TG+AYV V++ K A + TIG RY+++F
Sbjct: 218 TGDAYVRCVNIGVRDKVAKEMENKTIGGRYIQVF 251
>gi|159468195|ref|XP_001692268.1| hypothetical protein CHLREDRAFT_189395 [Chlamydomonas reinhardtii]
gi|158278454|gb|EDP04218.1| predicted protein [Chlamydomonas reinhardtii]
Length = 913
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+RGLP+ SEI+ FF+ Y + D + I G+ +GEA++ F + +EA RA
Sbjct: 818 IKIRGLPYGSSPSEILAFFQTYHFLPDTLQIGLDQLGRPSGEAWLSFTNPQEALRAT--- 874
Query: 238 KMTIGSRYVELFPSTPDEA 256
G R P TP E
Sbjct: 875 TTVFGGRG----PQTPSEG 889
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245
S+ + +I QFF Y + I PDG+ +G A+ EFVS EEA +A+ K+ IG RY
Sbjct: 628 SLVEDDIRQFFAPYDL--KGISFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRY 685
Query: 246 VELF 249
V L
Sbjct: 686 VRLL 689
>gi|195127149|ref|XP_002008031.1| GI13280 [Drosophila mojavensis]
gi|193919640|gb|EDW18507.1| GI13280 [Drosophila mojavensis]
Length = 1101
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+ T +K+ G+ S S++ ++F I + I I P+G TG AY+EF V A+
Sbjct: 421 IAETCYIKISGMCPSTSYSDLRKYFAGLYIPHNGIKIVSGPNGTRTGVAYIEFSRVSSAQ 480
Query: 232 RAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+A+ ++ R V++ P + +E + + RS +
Sbjct: 481 KALLRNNTLFRDRLVQIVPISDEEFEQVDERSHR 514
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++ MR +PF +I++FF DYK+ D I +GK TG+A V F S EA+ A
Sbjct: 1026 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDEGKPTGDARVAFESPAEARSA 1082
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I FF I E +HI G G+A++ F + E+A+ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D+ + V L S+ E ++ +R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETARN 88
>gi|397502356|ref|XP_003821827.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan paniscus]
Length = 268
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
+RLRGLP+ T DI F G D+ +++N GR SG+AF+ + A
Sbjct: 38 IRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 96
Query: 115 QR-DRQNMGRRYVEVFRCKRQD 135
Q+ ++NM RYVEVF+C ++
Sbjct: 97 QKCHKKNMKDRYVEVFQCSAEE 118
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++ S + A A
Sbjct: 36 DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMA 95
Query: 234 MCK-DKMTIGSRYVELFPSTPDE 255
K K + RYVE+F + +E
Sbjct: 96 AQKCHKKNMKDRYVEVFQCSAEE 118
>gi|18027358|gb|AAL55761.1|AF289577_1 unknown [Homo sapiens]
gi|119603621|gb|EAW83215.1| RNA binding motif protein 35B, isoform CRA_b [Homo sapiens]
Length = 303
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 53 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAA 111
Query: 115 QR-DRQNMGRRYVEVFRCKRQD 135
QR ++ M RYVEV C ++
Sbjct: 112 QRCHKKVMKERYVEVVPCSTEE 133
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A A
Sbjct: 51 DCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAA 110
Query: 234 M--CKDKMTIGSRYVELFPSTPDEARR 258
C K+ + RYVE+ P + +E R
Sbjct: 111 AQRCHKKV-MKERYVEVVPCSTEEMSR 136
>gi|114051910|ref|NP_001039420.1| probable RNA-binding protein 19 [Bos taurus]
gi|88954099|gb|AAI14030.1| RNA binding motif protein 19 [Bos taurus]
Length = 920
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 74 DICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
++ +F A L V + +V N +G +G FV F+ +V AL+ +R+ MG RY+EVFR +
Sbjct: 270 NVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRER 329
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--------ILKMRGLP 184
A P + AK + + EH E L +R LP
Sbjct: 330 NIPVAKA------------------PLKNGAKPWQGRTLGEHEEEEDLADSGRLFVRNLP 371
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243
++ + ++ + F Y + + + K G A+V F+ E A +A + D
Sbjct: 372 YTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 431
Query: 244 RYVELFPST 252
R + + PST
Sbjct: 432 RMLHVLPST 440
>gi|195021602|ref|XP_001985427.1| GH14505 [Drosophila grimshawi]
gi|193898909|gb|EDV97775.1| GH14505 [Drosophila grimshawi]
Length = 1049
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
++ MR +PF +I++FF DYK+ D I DGK TG+A V F SV EA+ A
Sbjct: 974 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESVVEARSA 1030
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I FF I E +HI G G+A++ F + E+A+ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLAIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D+ + V L S+ E ++ +R+
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETARK 88
>gi|291407017|ref|XP_002719829.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Oryctolagus cuniculus]
Length = 1025
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 74 DICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
++ +F A L V + +V N +G +G FV F+ +V+ AL+ +R+ MG RY+EVFR K
Sbjct: 283 NVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREK 342
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-MEHTEILKMRGLPFSVKKSE 191
V + + + G R N++++ + + L +R LP++ + +
Sbjct: 343 ------PVPATKGPQKSSTRPWQG-----RTLGENEEEEDLADSGRLFVRNLPYTSTEED 391
Query: 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250
+ + F Y + + + K G A+V F+ E A +A D R + + P
Sbjct: 392 LEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMMPEHAVKAYAGVDGQVFQGRMLHVLP 451
Query: 251 ST 252
ST
Sbjct: 452 ST 453
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 181 RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240
R P + + +++F K + I I G TG +V+F S EE K+A+ ++
Sbjct: 273 RRAPEARAQKNVLEFLAPLKPV--AIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCNREY 330
Query: 241 IGSRYVELFPSTPDEARRAESRS 263
+G RY+E+F P A + +S
Sbjct: 331 MGGRYIEVFREKPVPATKGPQKS 353
>gi|296478475|tpg|DAA20590.1| TPA: RNA binding motif protein 19 [Bos taurus]
Length = 825
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 74 DICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132
++ +F A L V + +V N +G +G FV F+ +V AL+ +R+ MG RY+EVFR +
Sbjct: 270 NVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRER 329
Query: 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE--------ILKMRGLP 184
A P + AK + + EH E L +R LP
Sbjct: 330 NIPVAKA------------------PLKNGAKPWQGRTLGEHEEEEDLADSGRLFVRNLP 371
Query: 185 FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243
++ + ++ + F Y + + + K G A+V F+ E A +A + D
Sbjct: 372 YTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 431
Query: 244 RYVELFPST 252
R + + PST
Sbjct: 432 RMLHVLPST 440
>gi|224061141|ref|XP_002300356.1| predicted protein [Populus trichocarpa]
gi|222847614|gb|EEE85161.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 63 LRGLPFNCTDIDICKFFAGL-DIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ G+ ++ + + ++F+ ++V+ +++ GR G FVVFA PI E + ++
Sbjct: 10 IGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVAERVIM-EKH 68
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
+ R VE + +D + ++ + HGSP P R K+ +
Sbjct: 69 VVDGRTVEAKKAVPRDDQHILSRNTS-------SIHGSPGPGRTKK------------IF 109
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKI----HIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ GL +V +++ ++F+ + II D + H RP G ++ + S E R +
Sbjct: 110 VGGLASTVTENDFKKYFEQFGIITDVVVMYDHNTLRPRGF----GFITYDSEEAVDRVLH 165
Query: 236 KDKMTIGSRYVELFPSTPDEARRAESRS 263
K + + VE+ + P E SRS
Sbjct: 166 KTFHELNGKMVEVKRAVPKELSPGPSRS 193
>gi|224084344|ref|XP_002307266.1| predicted protein [Populus trichocarpa]
gi|222856715|gb|EEE94262.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ L + G+P+ + + Q+ + +ED I + R G++ G YV FVS E+AK A+
Sbjct: 2 SQKLVILGIPWEIDTEGLRQYMSKFGELEDCIVMKERSSGRSRGFGYVTFVSAEDAK-AV 60
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESR 262
+ +G R +E+ +TP E RA ++
Sbjct: 61 LSGEHFLGKRMLEIKVATPKEEMRAPTK 88
>gi|242003014|ref|XP_002422579.1| squamous cell carcinoma antigen, putative [Pediculus humanus
corporis]
gi|212505369|gb|EEB09841.1| squamous cell carcinoma antigen, putative [Pediculus humanus
corporis]
Length = 858
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 83 DIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVA 141
+I D+ LV + GR G +V F ++ AL++DR+ + R + V +C
Sbjct: 627 EITDLRLVRDYKGRSKGYCYVEFEKSVEAARALKKDRELINGRPMFVSKC---------- 676
Query: 142 SEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI 201
D D +R+ + ME ++ +RGLPFS ++ F +
Sbjct: 677 ---------DPD-----KETRSGGFKYSSGMEKNKLF-VRGLPFSTTVEDLKTLFSKFGS 721
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRA-MCKDKMTIGSRYVELFPSTPDEARRAE 260
++D + + +G + G AYVEF A +A + D TI ++ + + S P E R+ E
Sbjct: 722 LKD-VRLVTYRNGHSKGLAYVEFEDEASAAQAVLSTDGTTIENKQISVAISNPPE-RKGE 779
Query: 261 S 261
+
Sbjct: 780 T 780
>gi|268566957|ref|XP_002639856.1| Hypothetical protein CBG12209 [Caenorhabditis briggsae]
Length = 965
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP + +++ FF KI + +HI G GE +V F S E+A+ AM +
Sbjct: 4 IIRLKNLPMTAAAADVRTFFSGLKIPDGAVHII----GGDEGEVFVGFASDEDARLAMAR 59
Query: 237 DKMTIGSRYVELFPSTPDE 255
D+ I + LF S+ E
Sbjct: 60 DRAKIHGAEIRLFLSSKSE 78
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
++RL+ LP D+ FF+GL I D V+ G GE FV FA A+ RDR
Sbjct: 4 IIRLKNLPMTAAAADVRTFFSGLKIPDG-AVHIIGGDEGEVFVGFASDEDARLAMARDRA 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVN 145
+ + +F + + + +A+ N
Sbjct: 63 KIHGAEIRLFLSSKSEQSSVIAARKN 88
>gi|159164255|pdb|2DNN|A Chain A, Solution Structure Of Rna Binding Domain In Rna-Binding
Protein 12
Length = 109
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQV 110
P P V + G+PF+ + D+ FF GL + V LL + GR +G V F P
Sbjct: 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDT 69
Query: 111 EFALQRDRQNMGRRYVEVFRCKRQDYYNA 139
AL+R+R M +RYVEV + + A
Sbjct: 70 FEALKRNRMLMIQRYVEVSPATERQWVAA 98
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ + G+PFS ++++ FF ++ D +H+ G+ G V+F+S ++ A+ ++
Sbjct: 19 VSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 76
Query: 238 KMTIGSRYVELFPST 252
+M + RYVE+ P+T
Sbjct: 77 RMLMIQRYVEVSPAT 91
>gi|356551592|ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795907 [Glycine max]
Length = 479
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 89/204 (43%), Gaps = 23/204 (11%)
Query: 63 LRGLPFNCTDIDICKFFAGL-DIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ G+ ++ + + ++F+ ++V+ +++ GR G FVVF+ P E + +++
Sbjct: 10 IGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVI-KEKH 68
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK 179
N+ R VE + +D N ++ HGSP P R ++ +
Sbjct: 69 NIDGRMVEAKKAVPRDDQNILSRN-------SGSIHGSPGPGRTRK------------IF 109
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
+ GL +V +S+ ++F + I D + + + G ++ + S E + + K
Sbjct: 110 VGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH 169
Query: 240 TIGSRYVELFPSTPDEARRAESRS 263
+ + VE+ + P E SR+
Sbjct: 170 ELNGKMVEVKRAVPKELSPGPSRT 193
>gi|195175076|ref|XP_002028289.1| GL16722 [Drosophila persimilis]
gi|194117421|gb|EDW39464.1| GL16722 [Drosophila persimilis]
Length = 1044
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
++ MR +PF + +I++FF DYK+ D I DGK TG+ V F S EA+ A
Sbjct: 969 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1028
Query: 236 KDKMTIGSRYVEL 248
+ + I SR V L
Sbjct: 1029 RRRKQIFSRTVHL 1041
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I FF I E +HI G G+A++ F + E+A+ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
D+ + V L S+ E ++ +R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 13/210 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V++ G+ N + D+ K+F GL I + ++ NG +G A++ F+ + ALQR+
Sbjct: 393 VKISGMCQNTSYSDLRKYFQGLYIPHNGIKIMTVNGSRTGVAYIEFSRVSSAQKALQRNN 452
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTE 176
R V++ ++ A + + H P + D+ +
Sbjct: 453 TMFRDRQVQIVPIGDAEFEQADEKSRSQQ-------HQPPQDVVGRNAGDRGGGSLPSFN 505
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
+L + LP + +I++ F I D I +A P+ + A+V F EA A+
Sbjct: 506 VLYVEDLPQLTTEQDIMKMFSATCTIVD-ILLAPSPNNRREFVAFVLFARETEALSALED 564
Query: 236 KDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG R + + PS+ E +A+ + R+
Sbjct: 565 TSRHYIGFRQLRVRPSSQAEMLQAKEKQRR 594
>gi|389646193|ref|XP_003720728.1| hypothetical protein MGG_02972 [Magnaporthe oryzae 70-15]
gi|86196705|gb|EAQ71343.1| hypothetical protein MGCH7_ch7g750 [Magnaporthe oryzae 70-15]
gi|351638120|gb|EHA45985.1| hypothetical protein MGG_02972 [Magnaporthe oryzae 70-15]
gi|440468564|gb|ELQ37720.1| hypothetical protein OOU_Y34scaffold00581g20 [Magnaporthe oryzae
Y34]
gi|440482297|gb|ELQ62803.1| hypothetical protein OOW_P131scaffold01045g7 [Magnaporthe oryzae
P131]
Length = 655
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 177 ILKMRGLPFSVKKSEIVQFF-KDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKR 232
++K++ +PF+ ++ EI+ F ++ KI+ D +HI T +AYVEFV++++A +
Sbjct: 294 VVKLKNIPFATRRVEIIAFLGRNSKILNDNLEPVHIIMERVTSKTMDAYVEFVTLQDAIK 353
Query: 233 AMCKDKMTI 241
A+ K + TI
Sbjct: 354 AVDKHQATI 362
>gi|380012874|ref|XP_003690499.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Apis florea]
Length = 902
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 88 LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYE 147
++ + GR G +V + ++ ALQ DR + R + V +C
Sbjct: 691 MIRDYKGRSKGYCYVQLSNIEAIDKALQLDRTPIRGRPMFVSKC---------------- 734
Query: 148 GIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207
P +R + +E ++ ++GLP S K E+ + FK + +++ +
Sbjct: 735 ---------DPNRTRGSGFKYSCSLEKNKLF-VKGLPVSTTKEELEEIFKVHGALKE-VR 783
Query: 208 IACRPDGKATGEAYVEFVSVEEAKRA-MCKDKMTIGSRYVELFPSTPDEARRAE 260
I +G + G AYVEF+ A +A + D M I + + + S P E ++ E
Sbjct: 784 IVTYRNGHSKGLAYVEFMDENSAAKALLATDGMKIADKVISVAISQPPERKKVE 837
>gi|198465484|ref|XP_001353649.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
gi|198150179|gb|EAL31163.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
Length = 1043
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
++ MR +PF + +I++FF DYK+ D I DGK TG+ V F S EA+ A
Sbjct: 968 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1027
Query: 236 KDKMTIGSRYVEL 248
+ + I SR V L
Sbjct: 1028 RRRKQIFSRTVHL 1040
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I FF I E +HI G G+A++ F + E+A+ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSR 264
D+ + V L S+ E ++ +R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 13/210 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V++ G+ N + D+ K+F GL I + ++ NG +G A++ F+ + ALQR+
Sbjct: 393 VKISGMCQNTSYSDLRKYFQGLYIPHNGIKIMTVNGSRTGVAYIEFSRVSSAQKALQRNN 452
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTE 176
R V++ ++ A + + H P + D+ +
Sbjct: 453 TMFRDRQVQIVPIGDAEFEQAEEKSRSQQ-------HQPPQDVVGRNAGDRGGGSLPSFN 505
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
+L + LP + +I++ F I D I +A P+ + A+V F EA A+
Sbjct: 506 VLYVEDLPQLTTEQDIMKMFSATCTIVD-ILLAPSPNNRREFVAFVLFARETEALSALED 564
Query: 236 KDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
+ IG R + + PS+ E +A+ + R+
Sbjct: 565 TSRHYIGFRQLRVRPSSQAEMLQAKEKQRR 594
>gi|118150456|ref|NP_001071207.1| uncharacterized protein LOC777631 [Danio rerio]
gi|116487941|gb|AAI25860.1| Zgc:153215 [Danio rerio]
Length = 523
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 21/186 (11%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV---LLVNKNGRFSGEAFVVFAGPIQ 109
P P V + L N T +I F I + L+NK G + AF+ F
Sbjct: 324 PSPQKEYSVIVNNLSRNITKTEIKNIFGCHAIQNYRIKHLLNKWGERTSTAFITFDNSED 383
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGS--PPPSRAKRYN 167
A++ + N+G + +EV +++ + ++ N F S PPP +
Sbjct: 384 QASAMKMNGMNVGLKNIEVLSITKEEILDILSK---------NRFVKSWRPPPYGNTHLS 434
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ R P V+K E+ FF Y I +D + + G GEA VEF
Sbjct: 435 -------MSCIYARNFPADVRKEEVKGFFMPYNIGDDAVRLLVDNQGNGIGEAIVEFRFQ 487
Query: 228 EEAKRA 233
AK+A
Sbjct: 488 NIAKQA 493
>gi|312091561|ref|XP_003147025.1| hypothetical protein LOAG_11458 [Loa loa]
Length = 88
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
+ GLP++ T +DI +FF L+ V++ L N+ R SG+A V F+ + AL R++
Sbjct: 1 MHFSGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVSFSTMAEAREALSRNKN 60
Query: 120 NMGRRYV 126
NMG R +
Sbjct: 61 NMGTRTI 67
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ GLP+SV +I +FF+ +E I + + + +G+A V F ++ EA+ A+ ++
Sbjct: 1 MHFSGLPYSVTTLDIEEFFRPLNCVE--IKLGYNEERRLSGDALVSFSTMAEAREALSRN 58
Query: 238 KMTIGSRYV 246
K +G+R +
Sbjct: 59 KNNMGTRTI 67
>gi|195376909|ref|XP_002047235.1| GJ12048 [Drosophila virilis]
gi|194154393|gb|EDW69577.1| GJ12048 [Drosophila virilis]
Length = 1091
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM-C 235
++ MR +PF +I++FF DYK+ D I DGK TG+A V F S EA+ A
Sbjct: 1016 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESPSEARSAFES 1075
Query: 236 KDKMTIGSRYVEL 248
K + I +R V L
Sbjct: 1076 KRRKQIFNRTVYL 1088
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++++ LP++ +I FF I E +HI G G+A++ F + E+A+ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
D+ + V L S+ E ++ +R+
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETARK 88
>gi|159163875|pdb|2CQP|A Chain A, Solution Structure Of The Rna Binding Domain Of
Rna-Binding Protein 12
Length = 98
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 77 LNDRPIGSRKVKL 89
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,571,094,882
Number of Sequences: 23463169
Number of extensions: 201789769
Number of successful extensions: 439574
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 796
Number of HSP's that attempted gapping in prelim test: 428998
Number of HSP's gapped (non-prelim): 5600
length of query: 265
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 125
effective length of database: 9,074,351,707
effective search space: 1134293963375
effective search space used: 1134293963375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)