BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024584
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis
GN=HNRNPF PE=2 SV=3
Length = 415
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PSAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF
PE=1 SV=3
Length = 415
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 PGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>sp|Q794E4|HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus
GN=Hnrnpf PE=1 SV=3
Length = 415
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 232
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf
PE=1 SV=3
Length = 415
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADSANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVFRCKRQDYYN 138
++ +G RRY+ + + D
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMR 232
Query: 139 AVASEVNYEG----------------IYDNDFHGSPPPSRAKRYNDKD---QMEHTEILK 179
+ A Y G ++ D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
>sp|Q5E9J1|HNRPF_BOVIN Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF
PE=2 SV=3
Length = 414
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR++MG RY+EVF+ R +E+++ + P+ A ND
Sbjct: 72 KKDRESMGHRYIEVFKSHR--------TEMDWVLKHSG-------PNSADTANDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EI+QFF +I+ + I + P+GK TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ +E R
Sbjct: 170 GKHKERIGHRYIEVFKSSQEEVR 192
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 110/265 (41%), Gaps = 63/265 (23%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL +
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 118 RQNMG---------------------------------------RRYVEVF------RCK 132
++ +G RRY+ + R +
Sbjct: 173 KERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMR 232
Query: 133 RQDYYNAVASEVNYEGIYDN----------DFHGSPPPSRAKRYNDKD---QMEHTEILK 179
Y Y G+ D D RY D + Q +
Sbjct: 233 SGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVH 292
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKM 239
MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + EEA AM KD+
Sbjct: 293 MRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 240 TIGSRYVELFPSTPDEARRAESRSR 264
+ RY+ELF ++ A S+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQ 375
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V FA + A+ +DR
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGI 149
NM RY+E+F N S +G+
Sbjct: 351 NMQHRYIELFLNSTTGASNGAYSSQMMQGM 380
>sp|Q3US41|ESRP1_MOUSE Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1
PE=2 SV=2
Length = 680
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ ++ +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 443
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 444 ---------DCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 494
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K T+ RYVE+F + +E
Sbjct: 495 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 526
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ + +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 IDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 279
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 280 LALQRHKHHMGTRYIEVYKAT 300
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 438 PPTNVRDCIRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 496
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 497 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 547
>sp|B2RYD2|ESRP1_RAT Epithelial splicing regulatory protein 1 OS=Rattus norvegicus
GN=Esrp1 PE=2 SV=2
Length = 677
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 49/223 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSP--------------- 158
L++ + +G+RY+E+FR + A+EV N F +P
Sbjct: 387 LRKHKDLLGKRYIELFR--------STAAEVQQ---VLNRFSSAPLIPLPTAPIIPVLPQ 435
Query: 159 ---PPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPD 213
PP+ + + +++RGLP++ +I+ F ++ I +H+
Sbjct: 436 QFVPPTNVR-----------DCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ 484
Query: 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
G+ +G+A+++ S + A A K K T+ RYVE+F + +E
Sbjct: 485 GRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP VRLRGLP+ T DI F D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCVRLRGLPYAATIEDILDFLGEFS-TDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQD 135
+ A Q+ ++ M RYVEVF+C ++
Sbjct: 498 TDRAFMAAQKYHKKTMKDRYVEVFQCSAEE 527
>sp|Q6NXG1|ESRP1_HUMAN Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1
PE=1 SV=2
Length = 681
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E+V FF + I ++ I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF + +L V +GR +G+AFV+FA + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSP----PPSRAKRY 166
L++ + +G+RY+E+FR + Q N +S P PP+ +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR-- 444
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEF 224
+ +++RGLP++ +I+ F ++ I +H+ G+ +G+A+++
Sbjct: 445 ---------DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 225 VSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255
S + A A K K + RYVE+F + +E
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ +++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 221 IDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 280
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + K +G+RY+E++ +T
Sbjct: 281 LALQRHKHHMGTRYIEVYKAT 301
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAG 106
PP +RLRGLP+ T DI F G D+ +++N GR SG+AF+
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFL-GEFATDIRTHGVHMVLNHQGRPSGDAFIQMKS 497
Query: 107 PIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++NM RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 ADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 548
>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMAKDKANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens
GN=HNRNPH1 PE=1 SV=4
Length = 449
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus
GN=Hnrnph1 PE=1 SV=3
Length = 449
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2
PE=2 SV=1
Length = 449
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii
GN=HNRNPH2 PE=2 SV=1
Length = 449
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens
GN=HNRNPH2 PE=1 SV=1
Length = 449
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF K EIVQFF +I+ + + + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+ MRGLP+ +++I FF + ++HI PDG+ TGEA VEF + E+A AM KD
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 238 KMTIGSRYVELF 249
K + RYVELF
Sbjct: 349 KANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ + V + + +GR +GEA V F
Sbjct: 276 YGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELF 360
>sp|Q8VHV7|HNRH1_RAT Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus
GN=Hnrnph1 PE=1 SV=2
Length = 449
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 27/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++DR+ MG RYVEVF+ ++ V + + + SP + ND
Sbjct: 72 KKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----NDG----- 111
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++RGLPF + EIVQFF +I+ + I + G++TGEA+V+F S E A++A+
Sbjct: 112 --FVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKAL 169
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K K IG RY+E+F S+ E R
Sbjct: 170 KKHKERIGHRYIEIFKSSRAEVR 192
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 165 RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAY 221
RY D Q + MRGLP+ +++I FF + ++HI PDG+ TGEA
Sbjct: 275 RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVTGEAD 332
Query: 222 VEFVSVEEAKRAMCKDKMTIGSRYVELF 249
VEF + E+A AM KDK + RYVELF
Sbjct: 333 VEFATHEDAVAAMSKDKANMQHRYVELF 360
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 46 YGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVF 104
YG GG + V +RGLP+ T+ DI FF+ L+ V V + +GR +GEA V F
Sbjct: 276 YGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEF 335
Query: 105 AGPIQVEFALQRDRQNMGRRYVEVF 129
A A+ +D+ NM RYVE+F
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELF 360
>sp|A1L1G1|ESRP1_DANRE Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1
PE=2 SV=1
Length = 714
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A + ++Q+
Sbjct: 286 HKHHMGGRYIEVYKATGEDFLKIAGGTSN---------------EVASFLSRENQI---- 326
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++QFF + D I PDG+ TG+A+V F E A+ A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ ++
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFA-GLDIVD----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPFN T + +FF+ + D +L V +GR +G+AFV+F+ + A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ + +G+RY+E+F+ + Q N +S PP+ +
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTFVPQTAAVP 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + +++RGLP+ +I+ F +Y I +H+ G+ +GEA+++ S E
Sbjct: 447 GVR--DCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSAE 504
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A + K ++ RYVE+F + E
Sbjct: 505 RAFLAAQRCHKRSMKERYVEVFACSAQE 532
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
++++ +++ RGLP+ +I +FF+ I + + G+ GEA V F S E
Sbjct: 219 ERVDDNTVIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEH 278
Query: 230 AKRAMCKDKMTIGSRYVELFPST 252
A+ + K +G RY+E++ +T
Sbjct: 279 RDLALQRHKHHMGGRYIEVYKAT 301
>sp|Q7ZY29|ESRP1_XENLA Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1
PE=2 SV=1
Length = 688
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + ++ I PD + TG+A+V F E A+ A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ ++ +G+RY+E+FR + Q N +S P P N +D
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNRYSSAPLIPLPTPPIIPVLPQPF-IPPVNVRD 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I++F ++ I +H+ G+ +G+++++ S +
Sbjct: 447 ------CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSAD 500
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 RAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 220 EMIDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEH 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 280 RDLALQRHKHHMGNRYIEVYKATGED 305
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFA 105
PP +RLRGLP+ T DI +F D+ +++N GR SG++F+
Sbjct: 439 IPPVNVRDCIRLRGLPYAATIEDILEFLGEFS-ADIRTHGVHMVLNHQGRPSGDSFIQMK 497
Query: 106 GPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 SADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 549
>sp|Q6DEZ7|ESRP1_XENTR Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis
GN=esrp1 PE=2 SV=1
Length = 687
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +D+ N A+ + ++Q+
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ E++ FF + ++ I PD + TG+A+V F E A+ A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLVN-KNGRFSGEAFVVFAGPIQVEFA 113
+VR+RGLPF T ++ FF V +L V + R +G+AFV+FA + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKD 170
L++ ++ +G+RY+E+FR + Q N +S P P N +D
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVLNRYSSAPLIPLPTPPIIPVLPQPF-IPPVNVRD 446
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVE 228
+++RGLP++ +I++F ++ I +H+ G+ +G+++++ S +
Sbjct: 447 ------CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSAD 500
Query: 229 EAKRAMCK-DKMTIGSRYVELFPSTPDE 255
A A K K T+ RYVE+F + +E
Sbjct: 501 RAYLAAQKCHKKTMKDRYVEVFQCSAEE 528
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
++ I++ RGLP+ +I +FFK I + + G+ GEA V FVS E
Sbjct: 222 IDDNTIIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRD 281
Query: 232 RAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G+RY+E++ +T ++
Sbjct: 282 LALQRHKHHMGNRYIEVYKATGED 305
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFA 105
PP +RLRGLP+ T DI +F D+ +++N GR SG++F+
Sbjct: 439 IPPVNVRDCIRLRGLPYAATIEDILEFLGEFS-ADIRTHGVHMVLNHQGRPSGDSFIQMK 497
Query: 106 GPIQVEFALQR-DRQNMGRRYVEVFRCKRQDY-YNAVASEVNYEGIYDNDFHGSPPPSR 162
+ A Q+ ++ M RYVEVF+C ++ + + +N G+ SPPP +
Sbjct: 498 SADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGL-------SPPPCK 549
>sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3
Length = 992
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + ++ ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QRELVLNPEGEVSSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E +H+ +G+ G+A V+F + ++A ++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 601
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I+K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 977 LNDRPIGSRKVKL 989
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV 140
+ V + + + N +
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI 83
>sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1
Length = 932
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMMLNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1
Length = 932
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 859 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 918
Query: 237 -DKMTIGSRYVELF 249
+ IGSR V L+
Sbjct: 919 LNDRPIGSRKVNLY 932
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1
Length = 932
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 120 NMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKD 170
M +RYVEV + + A + ++ PPP S KR +
Sbjct: 366 LMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRS 424
Query: 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
E + ++GLPF + ++ FFK I+ED I+IA P+GKATGE +VEF + +
Sbjct: 425 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 484
Query: 231 KRAMCKDKMTIGSRYVELFPST 252
K A+C+ K +G+R++++ P T
Sbjct: 485 KAALCRHKQYMGNRFIQVHPIT 506
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
V L+GLPF + + FF LDIV+ + NG+ +GE FV F + AL R
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
+Q MG R+++V ++ + + D R N + + ++
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYD-------QREMILNPEGDVNSAKV 544
Query: 178 -LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +PFS+ K +++QF + + E+ +H+ +G+ G+A V+F + ++A+++
Sbjct: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++K++ +PF+V EI+ FF Y++I + + G TGEA V F S +EA A+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 237 -DKMTIGSRYVEL 248
+ IGSR V+L
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++++GLP +I FF I + +HI G GEA++ F + E+A+ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRAESRSRQ 265
TI V L S+ E + SR+
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSRR 88
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL+GLP +DI FF+GL I D + G GEAF+VFA + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEL-GEAFIVFATDEDARLGMMRTGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAVA------SEVNYEGIYDNDFHGSPPPS 161
+ V + + + N + N + N PPPS
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPS 110
>sp|Q22708|SYM2_CAEEL RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2
SV=3
Length = 618
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 24/206 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V R RGLP+ +D + +FFAGLDIV L ++ GR +GE V F+ + AL+R
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR 241
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
R + RY+EV++ ++ + GS + A + + +
Sbjct: 242 HRNFLLSRYIEVYKAGLDEFMHVAT--------------GSS--TEAMEFVSANAI---- 281
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
I++MRGLP+ ++I FF+ K+ DKI R DG+ TG+A+V+F + E+A++ + K
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLT-DKILFITRTDGRPTGDAFVQFETEEDAQQGLLK 340
Query: 237 DKMTIGSRYVELFPSTPDEARRAESR 262
+ IG RY+ELF ST E ++ R
Sbjct: 341 HRQVIGQRYIELFKSTAAEVQQVVKR 366
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRD 117
+VR+RGLP++CTD I FF L + D +L +GR +G+AFV F + L +
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177
RQ +G+RY+E+F+ + A+EV N + SP + A ++ + +
Sbjct: 342 RQVIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVANAVEAPEEKK---KDC 390
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIE--DKIHIACRPDGKATGEAYVEFVSVEEAKRA-- 233
+++RGLP+ IV F D+ + +H+ G +GEA+++ ++ E+A A
Sbjct: 391 VRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMIN-EQAASACA 449
Query: 234 --MCKDKMTIG--SRYVELFPSTPDE 255
+ + M++G RY+E+F ++ +E
Sbjct: 450 AGVHNNFMSVGKKKRYIEVFQASAEE 475
>sp|Q7ZVR8|ESRP2_DANRE Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2
PE=2 SV=2
Length = 736
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++QM
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQM---- 325
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDK---IHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ +++ F + D + PDG+ TG+A+V F E A+ A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAG----LDIVDVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F D + LL K +GR +G+AFV+FA + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 114 LQRDRQNMGRRYVEVFR---CKRQDYYN-----AVASEVNYEGIYDNDFHGSPPPSRAKR 165
L++ +Q +G+RY+E+FR + Q N + S + P
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPFITT 445
Query: 166 YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
N +D +++RGLP++ +I++F ++ I +H+ G+ +G+A+++
Sbjct: 446 GNTRD------CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQ 499
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S + A C KM + RYVE+F + +E
Sbjct: 500 MKSADRAFMVAQKCHKKM-MKDRYVEVFQCSTEE 532
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ + ++ +++ RGLP+ +I +FFK I + + + G+ GEA V F++
Sbjct: 215 SKTEAVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIN 274
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E A+ + K +GSRY+E++ +T +E
Sbjct: 275 SEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
+++M+GLP++ +I+ FF+ Y++ D + + G+ +GEA V F S + A+RA+
Sbjct: 660 LVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAV 717
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDI-VDVLLV--NKNGRFSGEAFVVF 104
PP +VR++GLP+N DI FF G + D +LV N +G+ SGEA V F
Sbjct: 654 PPQPGALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTF 707
>sp|Q5ZLR4|ESRP2_CHICK Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2
PE=2 SV=1
Length = 701
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ N A+ + ++Q+
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQV---- 327
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
I++MRGLPF+ + +++ F + ++ + PDG+ TG+A+V F E A+ A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ K K +G RY+ELF ST E ++ +R
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIV----DVLLVNK--NGRFSGEAFVVFAGPIQVEFA 113
++R+RGLPF T D+ F V + LL K +GR +G+AFV+F+ + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP-PSRAKRYNDKDQM 172
L++ ++ +G+RY+E+FR + A+EV N + +P P+
Sbjct: 388 LKKHKEILGKRYIELFR--------STAAEVQQ---VLNRYMSTPLIPTLPTPIIPVIPP 436
Query: 173 EHT-------EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVE 223
+T + +++RGLP++ +I+ F D I +H+ G+ +G+A+++
Sbjct: 437 PYTIATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQ 496
Query: 224 FVSVEEAKRAM--CKDKMTIGSRYVELFPSTPDE 255
S ++A C KM + RYVE+F + +E
Sbjct: 497 MKSADKAFMVAQKCHKKM-MKDRYVEVFQCSGEE 529
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
+ ++ +++ RGLP+ +I +FFK I + + + G+ GEA V FV+ E+
Sbjct: 220 ETVDSETVIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQ 279
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +GSRY+E++ +T +E
Sbjct: 280 RDLALERHKHHMGSRYIEVYKATGEE 305
>sp|Q8K0G8|ESRP2_MOUSE Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2
PE=2 SV=1
Length = 717
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 348
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G D + + + + +GR +G+AF +FA +
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGL-LFVRHPDGRPTGDAFALFACEELAQA 407
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRD-- 465
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +SVE A
Sbjct: 466 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 521
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C KM + RYVE+ P + +E R
Sbjct: 522 LAAAQRCHKKM-MKERYVEVVPCSTEEMSR 550
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 167 NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + FV
Sbjct: 238 SKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVD 297
Query: 227 VEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
E+ A+ + K +G RY+E++ +T +E
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEE 326
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 467 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 525
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 526 QRCHKKMMKERYVEVVPCSTEEMSRVLMGGSLSRSGL-------SPPPCK 568
>sp|B2RYJ8|ESRP2_RAT Epithelial splicing regulatory protein 2 OS=Rattus norvegicus
GN=Esrp2 PE=2 SV=1
Length = 716
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 307 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 347
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + D + PDG+ TG+A+ F E A+ A
Sbjct: 348 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAA 407
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 408 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 19/210 (9%)
Query: 60 VVRLRGLPFNCTDIDI-------CKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEF 112
++RLRGLPF+ D+ C G+D + + + + +GR +G+AF +FA +
Sbjct: 348 ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGL-LFVRHPDGRPTGDAFALFACEELAQA 406
Query: 113 ALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQM 172
AL+R + +G+RY+E+FR + + + P P +D
Sbjct: 407 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRD-- 464
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEA 230
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ +SVE A
Sbjct: 465 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 520
Query: 231 KRAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 521 LAAAQRCHKKV-MKERYVEVVPCSTEEMSR 549
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D +++ +++ RGLP+ ++ +FFK I + + G+ GEA + F E+
Sbjct: 240 DVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQ 299
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K +G RY+E++ +T +E
Sbjct: 300 RDLALQRHKHHMGVRYIEVYKATGEE 325
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVDV------LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
VRLRGLP+ T DI F G D+ +++N+ GR SG+AF+ + A
Sbjct: 466 VRLRGLPYTATIEDILSFL-GEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAA 524
Query: 115 QR-DRQNMGRRYVEVFRCKRQDYYNAV-ASEVNYEGIYDNDFHGSPPPSR 162
QR ++ M RYVEV C ++ + ++ G+ SPPP +
Sbjct: 525 QRCHKKVMKERYVEVVPCSTEEMSRVLMGGSLSRSGL-------SPPPCK 567
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3
Length = 480
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370
Query: 149 IYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
++++ P P + D + MRGLPF +I+ FF K + +
Sbjct: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 428
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 429 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Query: 48 YGGGFPPPPSFPV--------------VRLRGLPFNCTDIDICKFFAGLDIVD-----VL 88
Y PPPP + + +R +GLP++CT D+ FF+ I +
Sbjct: 125 YLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 184
Query: 89 LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEG 148
L+N++G+ G+A + V+ AL++ R MG+RYVEV+ +D +A+ + +
Sbjct: 185 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV-DALMKSLQVKS 243
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
SP ND ++++RGLP+S + +IV FF I++ +
Sbjct: 244 --------SP------VVNDG-------VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEAR 257
R K TGEAYV+F E A +A+ K + IG+RY+E+FPS +E R
Sbjct: 283 DYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ 115
S V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 399 SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 458
Query: 116 RDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 459 KDRSHVHHRYIELF 472
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2
Length = 479
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 36/224 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQRD 117
VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL +
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----G 148
R+ +G RY+E+F +R + V S EVN +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 149 IYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205
+++D P +++ D + + MRGLPF +I+ FF K + +
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--R 427
Query: 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
I + GKATGEA V F + E+A AM KD+ + RY+ELF
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFAL 114
++R +GLP++CT D+ FF+ I + L+N++G+ G+A + V+ AL
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 115 QRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEH 174
++ R MG+RYVEV+ +D + S P P +
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVDALMKS-----------LQVKPSPVLSDG--------- 249
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++++RGLP+S + +IV FF I++ + R K TGEAYV+F E A +A+
Sbjct: 250 --VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQAL 306
Query: 235 CKDKMTIGSRYVELFPSTPDEAR 257
K + IG+RY+E+FPS +E R
Sbjct: 307 LKHREEIGNRYIEIFPSRRNEVR 329
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFAL 114
PS V +RGLPF DI FFA L V + + + +G+ +GEA V F A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 115 QRDRQNMGRRYVEVF 129
+DR ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>sp|Q9H6T0|ESRP2_HUMAN Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2
PE=1 SV=1
Length = 727
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 25/209 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ +MG RY+EV++ +++ +A + E A+ + +DQ+
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK-IAGGTSLE--------------VARFLSREDQV---- 358
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
IL++RGLPFS ++++ F + + + PDG+ TG+A+ F E A+ A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 234 MCKDKMTIGSRYVELFPSTPDEARRAESR 262
+ + K +G RY+ELF ST E ++ +R
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD-----VLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
++RLRGLPF+ D+ F V +L V + +GR +G+AF +FA + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+R + +G+RY+E+FR + + + + P P +D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRD--- 475
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAK 231
+++RGLP++ +I+ F + I +H+ G+ +G+A+++ S E A
Sbjct: 476 ---CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 232 RAM--CKDKMTIGSRYVELFPSTPDEARR 258
A C K+ + RYVE+ P + +E R
Sbjct: 533 AAAQRCHKKV-MKERYVEVVPCSTEEMSR 560
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 166 YNDK-DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEF 224
Y+ K D ++ +++ RGLP+ ++ +FFK + + + G+ GEA + F
Sbjct: 246 YSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRF 305
Query: 225 VSVEEAKRAMCKDKMTIGSRYVELFPSTPDE 255
V E+ A+ + K +G RY+E++ +T +E
Sbjct: 306 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 336
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 105 bits (263), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 29/214 (13%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116
+VR RGLP+ +D DI KFF GL++ L ++ GR +GEA + F + AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 117 DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE 176
+ ++G RY+EV+R +D+ A+A + E A+ + K
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQV--- 380
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKII-------EDKIHIACRPDGKATGEAYVEFVSVEE 229
I++MRGLP+ +++ FF + + +PDG+ATG+A+V F + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263
A +A+ + + +IG RY+ELF ST E ++ +RS
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRS 474
Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 60/254 (23%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLD-----IVD----VLLVNK-NGRFSGEAFVVFAGPIQ 109
++R+RGLP++ T + FF D ++D VL V K +GR +G+AFV+FA
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 110 VEFALQRDRQNMGRRYVEVFR---CKRQDYYNAVASEVNYE------------------- 147
AL R R+++G+RY+E+FR + Q N NYE
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 148 ------GIYD-NDFHGSPPPSRAKRYNDKDQMEHTEIL----------KMRGLPFSVKKS 190
G + + G+ P + T+ L ++RGLP+
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 191 EIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDK-----MTIGS 243
I+ F D+ II +H+ G+ +GEA+++ + +EE+ R +C + M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQ-MDLEESAR-LCAQRRHNHYMMFGK 618
Query: 244 --RYVELFPSTPDE 255
RY+E+F + D+
Sbjct: 619 KYRYIEVFQCSGDD 632
Score = 54.7 bits (130), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEE 229
D+++ I++ RGLP+ +I +FF+ + + + + P G+ GEA + FV E
Sbjct: 273 DEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEH 332
Query: 230 AKRAMCKDKMTIGSRYVELFPSTPDE 255
A+ + K IG+RY+E++ ++ ++
Sbjct: 333 RDMALKRHKHHIGTRYIEVYRASGED 358
>sp|A8WPC5|SYM2_CAEBR RNA-binding protein sym-2 OS=Caenorhabditis briggsae GN=sym-2 PE=3
SV=2
Length = 634
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 24/208 (11%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSG--EAFVVFAGPIQVEFALQ 115
+VR+RGLP++CTD I FF L + + +L +GR +G +AFV F + L
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLL 345
Query: 116 RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHT 175
+ RQ +G+RY+E+F+ + A+EV N + +P + A +D+ +
Sbjct: 346 KHRQVIGQRYIELFK--------STAAEVQQVVKRCNLINSAPVVANAVEVSDEKK---K 394
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +++RGLP+ IV F D+ + +H+ G +GEA+++ +S E+A A
Sbjct: 395 DCVRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMIS-EQAAAA 453
Query: 234 MC----KDKMTIG--SRYVELFPSTPDE 255
+ M +G RY+E+F S+ +E
Sbjct: 454 TASGVHNNFMCVGKKKRYIEVFQSSAEE 481
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATG--EAYVEFVSVEEAKRAM 234
I++MRGLP+ ++I FF+ K+ E KI R DG+ TG +A+V+F + E+A++ +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTE-KILFITRTDGRPTGNCDAFVQFETEEDAQQGL 344
Query: 235 CKDKMTIGSRYVELFPSTPDEARRAESR 262
K + IG RY+ELF ST E ++ R
Sbjct: 345 LKHRQVIGQRYIELFKSTAAEVQQVVKR 372
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens
GN=HNRNPH3 PE=1 SV=2
Length = 346
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
+++RGLPF K EIVQFF+ +I+ + I + G++TGEA+V+F S E A+ A+ K
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 237 DKMTIGSRYVELFPSTPDEAR 257
K IG RY+E+F S+ E +
Sbjct: 77 HKERIGHRYIEIFRSSRSEIK 97
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQ 109
P S VRLRGLPF C+ +I +FF GL+IV L ++ GR +GEAFV FA
Sbjct: 10 PNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEI 69
Query: 110 VEFALQRDRQNMGRRYVEVFRCKRQD 135
E AL + ++ +G RY+E+FR R +
Sbjct: 70 AENALGKHKERIGHRYIEIFRSSRSE 95
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235
+ MRGLPF +++I FF I ++HI DG+ATGEA VEFV+ E+A AM
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPI--RVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 236 KDKMTIGSRYVELF-PSTP 253
KDK + RY+ELF STP
Sbjct: 253 KDKNNMQHRYIELFLNSTP 271
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 39 SASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFS 97
++SGF +GG F V +RGLPF T+ DI FF+ L+ + V + + +GR +
Sbjct: 187 ASSGF----HGGHF--------VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRAT 234
Query: 98 GEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129
GEA V F A+ +D+ NM RY+E+F
Sbjct: 235 GEADVEFVTHEDAVAAMSKDKNNMQHRYIELF 266
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2
Length = 836
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 27/271 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121
RGLP+ + D+ FF+GL VD +LL + +GR +G+A V FA + L+ R M
Sbjct: 159 RGLPYLVNEDDVRVFFSGL-CVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 122 GRRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQM 172
G R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 218 GSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPR 274
Query: 173 EHTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
+ + ++ L + K ++ F+D + D+I + D + T A+V F +
Sbjct: 275 ARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQ 333
Query: 228 EEAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
++ A+ K + R V + P + E R
Sbjct: 334 KDYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD 237
+K+ LPF SEI+ FF YK+I D + + G GEA V + EA A KD
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEAL-AAVKD 820
Query: 238 --KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 LSGRPVGPRKVKL 833
>sp|Q5RFT7|RB12B_PONAB RNA-binding protein 12B OS=Pongo abelii GN=RBM12B PE=2 SV=1
Length = 761
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 20/229 (8%)
Query: 41 SGFQPYGYGGGF-------PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNK 92
+GF G G G P P + LRGLP+ + D+ FF+GL + V+ L +
Sbjct: 130 AGFHSNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHH 189
Query: 93 NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDN 152
+GR +G+A V FA + L+ R MG R++EV + Q + + V +
Sbjct: 190 DGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRR 249
Query: 153 DFHGSPPPSRAKRYNDKDQMEHTE-----------ILKMRGLPFSVKKSEIVQFFKDYKI 201
SPP R+ K + + ++ L S+ + ++ FF+ +
Sbjct: 250 SEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDL 309
Query: 202 IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250
+++I + D T A+V F ++++ A+ K + R V + P
Sbjct: 310 TDEQIRFLYK-DENRTRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDP 357
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSR----AKRYNDKDQMEH 174
+ R V + R+ +A Y+ GSP R +++Y+ +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-------YEKKRSGSPERDRPGHVSQKYSQEGNSGQ 398
Query: 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ +R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 399 KLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 49/231 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQDYYNAV--------------------------------------- 140
+ VE+F + + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNIIESVKEEASNSGY 122
Query: 141 ASEVNYE-GIYDNDF-HGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
S +N + G + N HG+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHSNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 226
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2
Length = 834
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 25/270 (9%)
Query: 10 GSGGVSDGYEVGSKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPV------VRL 63
G+ GV + Y + + Y + + +GF G G P + P+ + L
Sbjct: 99 GASGVGNVYHFSDALKEEESYSGYGSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFL 158
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122
RGLP+ + D+ FF+GL + V+L+ + +GR +G+A V FA + L+ R MG
Sbjct: 159 RGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG 218
Query: 123 RRYVEVFRCKRQDY--YNAVASEVNYEGIYDNDFHGSPPPSR-------AKRYNDKDQME 173
R++EV + Q + + A+E ++ H PSR KR + K
Sbjct: 219 SRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHS---PSRRINGRHFRKRSHSKSPRA 275
Query: 174 HTE-----ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228
+ + ++ L + K ++ F+D + D+I + D + T A+V F + +
Sbjct: 276 RSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKNQK 334
Query: 229 EAKRAMCKDKMTIGSRYVELFPSTPDEARR 258
+ A+ K + R V + P + E R
Sbjct: 335 DYNTALGLHKTVLQYRPVLIDPVSRKEMVR 364
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L N D+ F D+ + + V K+ R + AFV+F AL +
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R++ + YE P +++Y+ + + L
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC---YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKL 401
Query: 179 --KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R LPF V K E+ +FF D+ ++ED I++ C G GEA V F S E+A +A
Sbjct: 402 CIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKA 458
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G+ GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGKV-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVFRCKRQD------------------------------YYNAVASEVNYEGI 149
+ VE+F + + + +A+ E +Y G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 150 -----YDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED 204
D FH + + + L +RGLP+ V + ++ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 205 KIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249
+ + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVM 225
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FFK I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKD-- 237
+ LPF +EI+ FF YK+I D + I +G GEA V + EA A+ KD
Sbjct: 762 ISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAV-KDLS 820
Query: 238 KMTIGSRYVEL 248
+G R V+L
Sbjct: 821 GRPVGPRKVKL 831
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 61.6 bits (148), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P + V+LRG PFN T+ ++ +F A L V + +V N +G +G FV F+ +V+ A
Sbjct: 290 PTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173
L+ +R+ MG RY+EVFR ++ + N + G +++ +
Sbjct: 350 LKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQGRILGEN--------EEEEDLA 399
Query: 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+ L +R LP++ + ++ + F Y + + + K G A++ F+ E A +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 234 MCK-DKMTIGSRYVELFPST 252
+ D R + + PST
Sbjct: 460 YSEVDGQVFQGRMLHVLPST 479
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 60.8 bits (146), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 16/212 (7%)
Query: 56 PSFP-VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NKNGRFSGEAFVVFAGPIQVEFA 113
P+ P V+LRG PFN T+ ++ +F A L V + +V N +G +G FV + +V+ A
Sbjct: 289 PTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKA 348
Query: 114 LQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ-M 172
L+ +R MG RY+EVFR K+ +P R N++++ +
Sbjct: 349 LKCNRDYMGGRYIEVFREKQAPTARGPPKST------------TPWQGRTLGENEEEEDL 396
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKR 232
+ L +R L ++ + ++ + F Y + + + K G A+V F+ E A +
Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456
Query: 233 AMCK-DKMTIGSRYVELFPSTPDEARRAESRS 263
A + D R + + PST + E+ +
Sbjct: 457 AYAEVDGQVFQGRMLHVLPSTIKKEASQEANA 488
>sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens GN=RBM12B PE=1 SV=2
Length = 1001
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVL-LVNKNGRFSGEAFVVFAGPIQVEFALQRD 117
P + LRGLP+ + D+ FF+GL + V+ L + +GR +G+A V FA + L+
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 118 RQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTE- 176
R MG R++EV + Q + + V + SPP R+ K +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 177 ----------ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226
+ ++ L S+ + ++ FF+ + +++I + D T A+V F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYK-DENRTRYAFVMFKT 333
Query: 227 VEEAKRAMCKDKMTIGSRYVELFP 250
+++ A+ K + R V + P
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDP 357
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 61 VRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR 118
V L+ L + + D+ FF G D+ D + + K+ + AFV+F AL +
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 119 QNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEIL 178
+ R V + R+ +A YE P +++Y+ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIA---RYEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCI 402
Query: 179 KMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRA 233
+R PF V K E+ +FF D+ + ED I++ G GEA V+F S E+A +A
Sbjct: 403 YIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 49/230 (21%)
Query: 60 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQ 119
V+RL GLPF +DI FF GL I D + G GEAF++FA A+ R
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEI-GEAFIIFATDEDARRAISRSGG 62
Query: 120 NMGRRYVEVF-----------RCKRQD-------------------YYNAVASEVNYEGI 149
+ VE+F KR D + +V E + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 150 -----YDNDFH------GSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198
D FH G+ P + + ++ L +RGLP+ V + ++ FF
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPY-----LFLRGLPYLVNEDDVRVFFSG 177
Query: 199 YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248
+ D + DG+ G+A V+F S +A + + +GSR++E+
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEV 225
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236
+K+ LPF +EI+ FF Y+II D + I G TGEA V ++ EA A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 237 DKMTIGSRYVEL 248
+ +G R V+L
Sbjct: 987 NDRPVGPRKVKL 998
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236
++++ GLPF +I FF I + +HI G GEA++ F + E+A+RA+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 237 DKMTIGSRYVELFPSTPDEARRA 259
I VELF S+ E ++
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKT 82
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
+ L FN T+ ++ + F D V++ LV+++GR G A++ F E L+ + +
Sbjct: 402 KNLSFNITEDELKEVFE--DAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEID 459
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
R V + YY + ++ + G ++ L +
Sbjct: 460 GRSVSL-------YYTGEKGQRQERTGKNSTWSG-----------------ESKTLVLSN 495
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM--CKDKMT 240
L +S + + + F+ I + P GK+ G A++EF S E+AK A+ C +KM
Sbjct: 496 LSYSATEETLQEVFEKATFI----KVPQNPHGKSKGYAFIEFASFEDAKEALNSC-NKME 550
Query: 241 IGSRYVEL 248
I R + L
Sbjct: 551 IEGRTIRL 558
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
+ L FN T+ ++ + F D +++ LV+++G+ G A++ F E L+ + +
Sbjct: 400 KNLSFNITEDELKEVFE--DAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 457
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
R V + YY + + + G ++ L +
Sbjct: 458 GRSVSL-------YYTGEKGQRQERTGKTSTWSG-----------------ESKTLVLSN 493
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM--CKDKMT 240
L +S K + + F+ I + P GK G A++EF S E+AK A+ C +KM
Sbjct: 494 LSYSATKETLEEVFEKATFI----KVPQNPHGKPKGYAFIEFASFEDAKEALNSC-NKME 548
Query: 241 IGSRYVEL 248
I R + L
Sbjct: 549 IEGRTIRL 556
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
++ N+ P R D ++ L + L F++ + E+ + F+D +I +
Sbjct: 373 VFGNEIKLEKPKGR-----DSKKVRAARTLLAKNLSFNITEDELKEVFEDAM----EIRL 423
Query: 209 ACRPDGKATGEAYVEFVSVEEAKRAM-CKDKMTIGSRYVELF 249
+ DGK+ G AY+EF S +A++ + K I R V L+
Sbjct: 424 VSQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 464
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
+ L FN T+ ++ + F D +++ LV+++G+ G A++ F E L+ + +
Sbjct: 399 KNLSFNITEDELKEVFE--DALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 456
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
R V + YY + ++ + G ++ L +
Sbjct: 457 GRSVSL-------YYTGEKGQRQERTGKNSTWSG-----------------ESKTLVLSN 492
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM--CKDKMT 240
L +S + + + F+ I + GK+ G A++EF S E+AK A+ C +KM
Sbjct: 493 LSYSATEETLQEVFEKATFI----KVPQNQQGKSKGYAFIEFASFEDAKEALNSC-NKME 547
Query: 241 IGSRYVEL 248
I R + L
Sbjct: 548 IEGRTIRL 555
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 149 IYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208
++ N+ P R D ++ L + L F++ + E+ + F ED + I
Sbjct: 372 VFGNEIKLEKPKGR-----DSKKVRAARTLLAKNLSFNITEDELKEVF------EDALEI 420
Query: 209 -ACRPDGKATGEAYVEFVSVEEAKRAM-CKDKMTIGSRYVELF 249
DGK+ G AY+EF S +A++ + K I R V L+
Sbjct: 421 RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 463
>sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17H9.04c PE=1 SV=1
Length = 604
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG-KATGEAYVEFVSVEEAK 231
E ++I+ + GL V + E+ +F ++ + + P+ K+TG +V F S E+A
Sbjct: 241 ERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGTGFVLFASHEDAA 300
Query: 232 RAMCKDKMTIGSRYVELFPST 252
A+ + +G R +E+ PS+
Sbjct: 301 DALAFNGYCLGDRMLEIIPSS 321
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
+ LP+ T ++ + F D ++ LV+K+G+ G A++ F E + + +
Sbjct: 399 KNLPYKVTQDELKEVFE--DAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEID 456
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
R + ++ Y +Y G ++ + G ++ L +
Sbjct: 457 GRSISLY------YTGEKGQNQDYRGGKNSTWSG-----------------ESKTLVLSN 493
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM--CKDKMT 240
L +S + + + F+ I + +GK+ G A++EF S E+AK A+ C +K
Sbjct: 494 LSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSC-NKRE 548
Query: 241 IGSRYVEL 248
I R + L
Sbjct: 549 IEGRAIRL 556
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D + L + LP+ V + E+ + F+D +I + + DGK+ G AY+EF +
Sbjct: 386 DSKKERDARTLLAKNLPYKVTQDELKEVFEDAA----EIRLVSK-DGKSKGIAYIEFKTE 440
Query: 228 EEAKRAMCKDKMT-IGSRYVELF 249
+A++ + + T I R + L+
Sbjct: 441 ADAEKTFEEKQGTEIDGRSISLY 463
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
+ LP+ T ++ + F D ++ LV+K+G+ G A++ F E + + +
Sbjct: 400 KNLPYKVTQDELKEVFE--DAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEID 457
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
R + ++ Y +Y G ++ + G ++ L +
Sbjct: 458 GRSISLY------YTGEKGQNQDYRGGKNSTWSG-----------------ESKTLVLSN 494
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM--CKDKMT 240
L +S + + + F+ I + +GK+ G A++EF S E+AK A+ C +K
Sbjct: 495 LSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSC-NKRE 549
Query: 241 IGSRYVEL 248
I R + L
Sbjct: 550 IEGRAIRL 557
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D + L + LP+ V + E+ + F+D +I + + DGK+ G AY+EF +
Sbjct: 387 DSKKERDARTLLAKNLPYKVTQDELKEVFEDAA----EIRLVSK-DGKSKGIAYIEFKTE 441
Query: 228 EEAKRAMCKDKMT-IGSRYVELF 249
+A++ + + T I R + L+
Sbjct: 442 ADAEKTFEEKQGTEIDGRSISLY 464
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 64 RGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDR-QNMG 122
+ LP+ T ++ + F D ++ LV+K+G+ G A++ F E + + +
Sbjct: 398 KNLPYKVTQDELKEVFE--DAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEID 455
Query: 123 RRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG 182
R + ++ Y +Y G ++ + G ++ L +
Sbjct: 456 GRSISLY------YTGEKGQNQDYRGGKNSTWSG-----------------ESKTLVLSN 492
Query: 183 LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM--CKDKMT 240
L +S + + + F+ I + +GK+ G A++EF S E+AK A+ C +K
Sbjct: 493 LSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSC-NKRE 547
Query: 241 IGSRYVEL 248
I R + L
Sbjct: 548 IEGRAIRL 555
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 168 DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227
D + L + LP+ V + E+ + F+D +I + + DGK+ G AY+EF +
Sbjct: 385 DSKKERDARTLLAKNLPYKVTQDELKEVFEDAA----EIRLVSK-DGKSKGIAYIEFKTE 439
Query: 228 EEAKRAMCKDKMT-IGSRYVELF 249
+A++ + + T I R + L+
Sbjct: 440 ADAEKTFEEKQGTEIDGRSISLY 462
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 39.7 bits (91), Expect = 0.025, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT-GEAYVEFVSVE 228
DQ+ + L +R LPF+ EI+ FF+ + ++ ++HI KA+ G A+V F
Sbjct: 308 DQIMESGRLFIRNLPFAASGDEILAFFESFGTVK-QVHIPLDKQTKASKGLAFVSFSDPA 366
Query: 229 EAKRAM-CKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
A A KD T R + L P+ +A AE+ S++
Sbjct: 367 HALAAYRAKDGSTFQGRLLHLLPAVNKDA-LAETGSKK 403
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 38.9 bits (89), Expect = 0.042, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234
++ LPF EI + F Y I+ + I +P+G G +VEF++ EEAK AM
Sbjct: 799 IKNLPFESTIKEIRKLFTAYGEIQ-SVRIPKKPNGGHRGFGFVEFLTEEEAKNAM 852
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Query: 160 PSRAKRYNDK------DQMEHTE--ILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIAC 210
P+ K ND+ +Q + TE L M L F++ + ++ +FF++ ++I + +A
Sbjct: 287 PAATKSQNDEPKTPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEVGEVIS--VRLAT 344
Query: 211 RPDGKATGEAYVEFVSVEEAKRAM 234
DG + G +V+F S EEAK+A+
Sbjct: 345 HEDGSSRGFGHVQFASSEEAKKAL 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,267,849
Number of Sequences: 539616
Number of extensions: 4879754
Number of successful extensions: 12123
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 11569
Number of HSP's gapped (non-prelim): 306
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)