Query 024584
Match_columns 265
No_of_seqs 268 out of 1457
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.1E-33 4.5E-38 247.8 23.9 166 53-254 102-275 (346)
2 KOG1365 RNA-binding protein Fu 100.0 2.6E-34 5.7E-39 244.8 13.8 248 13-264 110-372 (508)
3 KOG4211 Splicing factor hnRNP- 100.0 6.8E-33 1.5E-37 243.3 17.0 182 55-260 7-188 (510)
4 TIGR01645 half-pint poly-U bin 100.0 1.9E-31 4.2E-36 247.2 18.5 173 56-253 105-283 (612)
5 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-30 7.1E-35 237.7 22.1 174 55-252 86-264 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.3E-30 1.1E-34 228.7 22.4 199 56-255 87-350 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.5E-30 1.8E-34 227.4 20.7 160 57-252 2-169 (352)
8 KOG0117 Heterogeneous nuclear 100.0 7.5E-30 1.6E-34 221.5 16.7 196 54-257 79-334 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 8.2E-29 1.8E-33 233.9 21.3 186 55-259 175-369 (562)
10 TIGR01628 PABP-1234 polyadenyl 100.0 5.9E-29 1.3E-33 234.8 19.0 160 59-252 1-165 (562)
11 KOG0148 Apoptosis-promoting RN 100.0 4.8E-28 1E-32 198.4 15.6 177 52-253 56-237 (321)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 9.4E-28 2E-32 222.4 18.1 159 55-255 55-223 (578)
13 KOG4211 Splicing factor hnRNP- 100.0 1.3E-27 2.7E-32 210.2 16.5 236 15-253 59-357 (510)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.1E-27 1.1E-31 219.3 21.2 190 56-252 173-373 (509)
15 KOG0127 Nucleolar protein fibr 100.0 1.2E-27 2.6E-32 212.2 15.1 186 59-256 6-198 (678)
16 KOG0127 Nucleolar protein fibr 99.9 8.5E-27 1.9E-31 206.8 18.3 196 58-254 117-378 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 5.2E-26 1.1E-30 210.6 20.8 193 56-253 273-479 (481)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 5.7E-26 1.2E-30 210.5 17.9 162 56-255 136-308 (578)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.3E-26 2E-30 208.9 18.6 168 57-255 1-175 (481)
20 KOG0144 RNA-binding protein CU 99.9 1.6E-26 3.5E-31 200.0 12.1 166 55-255 31-207 (510)
21 KOG0131 Splicing factor 3b, su 99.9 3.9E-26 8.4E-31 177.2 11.1 166 56-255 7-178 (203)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.3E-25 1.8E-29 204.4 22.2 195 55-257 292-505 (509)
23 KOG0145 RNA-binding protein EL 99.9 3.9E-25 8.5E-30 180.4 15.8 200 52-252 121-356 (360)
24 TIGR01622 SF-CC1 splicing fact 99.9 1.8E-23 3.9E-28 192.9 23.1 199 57-259 185-453 (457)
25 KOG4205 RNA-binding protein mu 99.9 2.6E-24 5.6E-29 185.2 8.5 174 57-260 5-182 (311)
26 KOG0145 RNA-binding protein EL 99.9 5.2E-23 1.1E-27 168.1 14.6 162 55-252 38-207 (360)
27 KOG0123 Polyadenylate-binding 99.9 1.2E-22 2.6E-27 180.5 16.9 152 59-258 2-157 (369)
28 KOG0110 RNA-binding protein (R 99.9 2.2E-23 4.9E-28 190.4 11.2 175 59-260 516-699 (725)
29 KOG0124 Polypyrimidine tract-b 99.9 2.4E-23 5.2E-28 177.2 9.7 169 58-251 113-287 (544)
30 KOG0123 Polyadenylate-binding 99.9 1.6E-21 3.4E-26 173.4 14.7 175 58-262 76-254 (369)
31 KOG0109 RNA-binding protein LA 99.9 4.3E-22 9.2E-27 165.0 9.4 144 59-253 3-149 (346)
32 KOG0147 Transcriptional coacti 99.9 8.4E-22 1.8E-26 175.7 8.2 177 54-252 175-356 (549)
33 KOG1365 RNA-binding protein Fu 99.9 1.1E-21 2.5E-26 167.8 8.0 190 55-263 57-252 (508)
34 KOG0146 RNA-binding protein ET 99.8 1.8E-19 3.9E-24 148.0 11.8 201 56-256 17-367 (371)
35 KOG0105 Alternative splicing f 99.8 7E-19 1.5E-23 137.2 14.0 169 56-241 4-175 (241)
36 KOG4212 RNA-binding protein hn 99.8 1.3E-17 2.9E-22 145.2 20.6 195 55-250 41-290 (608)
37 TIGR01645 half-pint poly-U bin 99.8 1.2E-17 2.6E-22 155.6 21.8 77 56-132 202-282 (612)
38 KOG4307 RNA binding protein RB 99.8 2.5E-18 5.5E-23 156.8 12.4 232 22-256 277-516 (944)
39 KOG0147 Transcriptional coacti 99.8 8E-18 1.7E-22 150.5 11.9 190 61-255 281-529 (549)
40 KOG1548 Transcription elongati 99.7 9.7E-17 2.1E-21 136.2 17.4 195 53-253 129-351 (382)
41 KOG0148 Apoptosis-promoting RN 99.7 6.2E-18 1.3E-22 139.2 9.7 136 56-255 4-143 (321)
42 KOG0144 RNA-binding protein CU 99.7 6.5E-18 1.4E-22 146.9 9.4 80 173-252 422-502 (510)
43 PLN03134 glycine-rich RNA-bind 99.7 2.8E-17 6.2E-22 128.0 11.0 81 173-254 32-114 (144)
44 KOG0110 RNA-binding protein (R 99.7 5.1E-17 1.1E-21 149.0 14.0 194 54-252 381-596 (725)
45 PLN03134 glycine-rich RNA-bind 99.7 5.9E-17 1.3E-21 126.3 10.2 78 56-133 32-113 (144)
46 KOG4206 Spliceosomal protein s 99.7 9.4E-16 2E-20 123.8 16.7 190 56-252 7-220 (221)
47 KOG0106 Alternative splicing f 99.7 5.3E-17 1.1E-21 132.2 8.4 167 59-254 2-171 (216)
48 PF00076 RRM_1: RNA recognitio 99.7 4.3E-16 9.4E-21 106.0 9.2 69 178-247 1-70 (70)
49 PF14259 RRM_6: RNA recognitio 99.7 8.2E-16 1.8E-20 105.0 9.8 69 178-247 1-70 (70)
50 PF00076 RRM_1: RNA recognitio 99.6 8.7E-16 1.9E-20 104.5 8.2 67 61-127 1-70 (70)
51 KOG0125 Ataxin 2-binding prote 99.6 1.2E-15 2.6E-20 128.8 7.8 86 170-257 91-177 (376)
52 KOG4307 RNA binding protein RB 99.6 1.4E-14 3.1E-19 132.5 15.0 75 176-250 868-943 (944)
53 PF14259 RRM_6: RNA recognitio 99.6 5.5E-15 1.2E-19 100.9 9.0 67 61-127 1-70 (70)
54 TIGR01659 sex-lethal sex-letha 99.6 5.3E-15 1.2E-19 131.0 10.6 81 172-253 104-186 (346)
55 PLN03120 nucleic acid binding 99.6 7.8E-15 1.7E-19 122.6 10.1 75 175-252 4-78 (260)
56 KOG0149 Predicted RNA-binding 99.6 2.2E-15 4.8E-20 122.1 6.4 77 56-132 10-89 (247)
57 KOG0149 Predicted RNA-binding 99.6 4E-15 8.7E-20 120.6 7.0 80 174-253 11-90 (247)
58 KOG1457 RNA binding protein (c 99.6 6.9E-14 1.5E-18 112.5 12.0 181 57-241 33-273 (284)
59 PLN03120 nucleic acid binding 99.5 2.7E-14 5.8E-19 119.4 9.3 74 58-132 4-78 (260)
60 PLN03121 nucleic acid binding 99.5 3.7E-14 8E-19 116.7 9.8 76 56-132 3-79 (243)
61 PLN03121 nucleic acid binding 99.5 4.8E-14 1E-18 116.1 10.4 76 174-252 4-79 (243)
62 KOG0122 Translation initiation 99.5 2.9E-14 6.3E-19 116.1 8.7 80 174-254 188-269 (270)
63 KOG0121 Nuclear cap-binding pr 99.5 1.8E-14 4E-19 106.2 6.6 76 56-131 34-113 (153)
64 COG0724 RNA-binding proteins ( 99.5 2.2E-13 4.8E-18 116.0 13.8 164 58-235 115-285 (306)
65 KOG0121 Nuclear cap-binding pr 99.5 6.1E-14 1.3E-18 103.4 7.2 80 173-253 34-115 (153)
66 KOG0125 Ataxin 2-binding prote 99.5 4.9E-14 1.1E-18 119.2 7.5 81 54-134 92-174 (376)
67 KOG1190 Polypyrimidine tract-b 99.5 6.9E-13 1.5E-17 115.2 14.5 186 58-252 297-489 (492)
68 KOG0122 Translation initiation 99.5 1.1E-13 2.5E-18 112.7 8.6 78 56-133 187-268 (270)
69 KOG0114 Predicted RNA-binding 99.5 3.9E-13 8.5E-18 95.6 10.2 86 172-260 15-101 (124)
70 smart00362 RRM_2 RNA recogniti 99.5 3.2E-13 7E-18 91.3 9.2 70 177-248 1-71 (72)
71 KOG4212 RNA-binding protein hn 99.5 5.3E-12 1.1E-16 110.6 17.4 73 173-250 534-607 (608)
72 KOG0114 Predicted RNA-binding 99.5 7.2E-13 1.6E-17 94.2 9.6 83 53-136 13-97 (124)
73 PLN03213 repressor of silencin 99.4 7.8E-13 1.7E-17 117.4 11.1 82 173-258 8-92 (759)
74 smart00362 RRM_2 RNA recogniti 99.4 7.7E-13 1.7E-17 89.4 8.6 69 60-128 1-71 (72)
75 cd00590 RRM RRM (RNA recogniti 99.4 2.3E-12 5E-17 87.5 9.8 73 177-250 1-74 (74)
76 KOG0107 Alternative splicing f 99.4 4.8E-13 1E-17 103.9 6.9 75 57-133 9-84 (195)
77 smart00360 RRM RNA recognition 99.4 1.8E-12 3.9E-17 87.2 8.4 68 180-248 1-70 (71)
78 KOG4207 Predicted splicing fac 99.4 6.1E-13 1.3E-17 105.9 6.6 79 173-252 11-91 (256)
79 PLN03213 repressor of silencin 99.4 1.1E-12 2.5E-17 116.3 8.7 75 57-133 9-87 (759)
80 KOG0120 Splicing factor U2AF, 99.4 3.4E-12 7.3E-17 115.8 11.2 189 55-255 286-493 (500)
81 KOG4207 Predicted splicing fac 99.4 9.7E-13 2.1E-17 104.8 6.4 83 50-132 5-91 (256)
82 KOG0126 Predicted RNA-binding 99.4 9.4E-14 2E-18 108.4 0.5 76 56-131 33-112 (219)
83 KOG0113 U1 small nuclear ribon 99.4 6.1E-12 1.3E-16 105.4 10.3 80 173-253 99-180 (335)
84 KOG0107 Alternative splicing f 99.3 3.2E-12 6.9E-17 99.4 7.7 76 174-254 9-85 (195)
85 KOG0126 Predicted RNA-binding 99.3 1.8E-13 3.9E-18 106.8 0.8 76 174-250 34-111 (219)
86 KOG0124 Polypyrimidine tract-b 99.3 6.2E-11 1.3E-15 101.9 16.2 75 57-131 209-287 (544)
87 KOG0120 Splicing factor U2AF, 99.3 3.8E-12 8.2E-17 115.5 8.9 187 55-254 172-369 (500)
88 smart00360 RRM RNA recognition 99.3 4.7E-12 1E-16 85.1 7.4 66 63-128 1-70 (71)
89 COG0724 RNA-binding proteins ( 99.3 6.4E-12 1.4E-16 106.9 9.8 77 175-252 115-193 (306)
90 cd00590 RRM RRM (RNA recogniti 99.3 1.5E-11 3.2E-16 83.5 8.9 70 60-129 1-73 (74)
91 KOG0113 U1 small nuclear ribon 99.3 7.1E-12 1.5E-16 105.0 8.5 76 55-130 98-177 (335)
92 KOG1190 Polypyrimidine tract-b 99.3 8.1E-12 1.8E-16 108.6 9.1 191 56-254 26-228 (492)
93 KOG0108 mRNA cleavage and poly 99.3 6.4E-12 1.4E-16 113.2 8.6 78 59-136 19-100 (435)
94 KOG1456 Heterogeneous nuclear 99.3 6.8E-11 1.5E-15 101.9 13.8 168 54-256 27-201 (494)
95 KOG0131 Splicing factor 3b, su 99.3 4.7E-12 1E-16 99.0 5.5 79 173-252 7-87 (203)
96 KOG0111 Cyclophilin-type pepti 99.3 3.2E-12 7E-17 102.7 4.6 83 173-256 8-92 (298)
97 KOG0108 mRNA cleavage and poly 99.3 1E-11 2.2E-16 112.0 8.0 77 176-253 19-97 (435)
98 KOG0117 Heterogeneous nuclear 99.3 2.8E-11 6E-16 106.4 9.8 78 173-251 81-161 (506)
99 KOG0130 RNA-binding protein RB 99.3 1.2E-11 2.6E-16 92.2 6.3 78 55-132 69-150 (170)
100 KOG0130 RNA-binding protein RB 99.3 1E-11 2.3E-16 92.5 5.9 79 173-252 70-150 (170)
101 KOG0129 Predicted RNA-binding 99.2 5E-10 1.1E-14 100.4 15.5 177 55-251 256-451 (520)
102 KOG0128 RNA-binding protein SA 99.2 9E-13 2E-17 123.6 -2.3 145 57-253 666-814 (881)
103 smart00361 RRM_1 RNA recogniti 99.2 1E-10 2.2E-15 79.8 8.4 59 189-248 2-69 (70)
104 KOG1456 Heterogeneous nuclear 99.2 2.8E-09 6.2E-14 92.0 18.2 183 55-243 284-474 (494)
105 smart00361 RRM_1 RNA recogniti 99.2 9.7E-11 2.1E-15 79.9 7.1 58 71-128 1-69 (70)
106 PF13893 RRM_5: RNA recognitio 99.2 1.3E-10 2.9E-15 75.6 7.2 55 192-251 1-56 (56)
107 KOG0226 RNA-binding proteins [ 99.2 2.8E-11 6.2E-16 99.3 4.6 172 56-257 94-273 (290)
108 KOG0111 Cyclophilin-type pepti 99.2 2.2E-11 4.7E-16 98.0 3.7 79 56-134 8-90 (298)
109 KOG4454 RNA binding protein (R 99.1 1E-11 2.2E-16 99.8 1.0 134 53-236 4-144 (267)
110 KOG0105 Alternative splicing f 99.1 1.1E-10 2.5E-15 91.6 6.7 76 174-252 5-81 (241)
111 PF13893 RRM_5: RNA recognitio 99.1 4.2E-10 9.2E-15 73.2 7.2 54 75-131 1-56 (56)
112 KOG4210 Nuclear localization s 99.1 1.4E-10 3E-15 100.0 5.4 171 57-253 87-263 (285)
113 KOG4208 Nucleolar RNA-binding 99.0 8.4E-10 1.8E-14 88.2 7.4 82 53-134 44-130 (214)
114 KOG4208 Nucleolar RNA-binding 99.0 1.7E-09 3.7E-14 86.5 8.8 86 172-257 46-133 (214)
115 KOG0146 RNA-binding protein ET 99.0 6.3E-10 1.4E-14 92.1 4.6 78 54-131 281-362 (371)
116 KOG0109 RNA-binding protein LA 98.9 1.2E-09 2.6E-14 91.5 5.2 71 176-254 3-74 (346)
117 KOG0533 RRM motif-containing p 98.9 3.3E-09 7.2E-14 88.6 7.8 82 174-256 82-164 (243)
118 KOG4206 Spliceosomal protein s 98.9 4.3E-09 9.3E-14 85.5 7.2 78 174-254 8-90 (221)
119 KOG4205 RNA-binding protein mu 98.9 6.6E-10 1.4E-14 96.3 2.6 83 174-257 5-88 (311)
120 KOG0153 Predicted RNA-binding 98.9 6.8E-09 1.5E-13 88.9 8.3 78 170-253 223-302 (377)
121 KOG0533 RRM motif-containing p 98.8 1.6E-08 3.4E-13 84.5 7.5 79 56-134 81-162 (243)
122 KOG0132 RNA polymerase II C-te 98.8 1.1E-08 2.3E-13 95.7 6.9 73 58-134 421-495 (894)
123 KOG0153 Predicted RNA-binding 98.7 3.2E-08 7E-13 84.9 7.3 78 52-133 222-302 (377)
124 KOG0132 RNA polymerase II C-te 98.7 2E-08 4.4E-13 93.9 6.4 80 173-258 419-499 (894)
125 KOG0116 RasGAP SH3 binding pro 98.7 3.5E-08 7.6E-13 88.8 7.4 75 175-250 288-363 (419)
126 KOG0116 RasGAP SH3 binding pro 98.7 4.5E-08 9.7E-13 88.1 7.8 76 56-131 286-364 (419)
127 KOG1548 Transcription elongati 98.7 6E-08 1.3E-12 83.2 7.9 80 173-252 132-219 (382)
128 KOG0415 Predicted peptidyl pro 98.6 8.4E-08 1.8E-12 82.5 6.8 81 171-252 235-317 (479)
129 KOG0415 Predicted peptidyl pro 98.6 7.6E-08 1.6E-12 82.8 5.8 78 55-132 236-317 (479)
130 KOG0226 RNA-binding proteins [ 98.6 4.6E-08 1E-12 80.6 4.3 80 55-134 187-270 (290)
131 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.7E-07 3.7E-12 85.2 8.0 80 173-253 403-484 (940)
132 KOG4209 Splicing factor RNPS1, 98.6 1.4E-07 2.9E-12 79.0 6.2 78 55-132 98-178 (231)
133 KOG4209 Splicing factor RNPS1, 98.6 1.5E-07 3.3E-12 78.7 6.5 78 173-251 99-177 (231)
134 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.1E-07 4.6E-12 84.6 6.5 79 56-134 403-485 (940)
135 PF04059 RRM_2: RNA recognitio 98.4 1.8E-06 4E-11 62.1 8.9 74 59-132 2-85 (97)
136 KOG4454 RNA binding protein (R 98.4 9.8E-08 2.1E-12 77.1 1.8 78 173-252 7-85 (267)
137 KOG0112 Large RNA-binding prot 98.4 1.9E-07 4E-12 88.9 3.4 155 55-252 369-529 (975)
138 PF04059 RRM_2: RNA recognitio 98.4 5.4E-06 1.2E-10 59.7 10.0 80 176-255 2-88 (97)
139 KOG1457 RNA binding protein (c 98.3 3.4E-06 7.3E-11 68.6 8.6 80 173-253 32-117 (284)
140 KOG4676 Splicing factor, argin 98.3 8.7E-07 1.9E-11 77.3 4.4 179 60-242 9-214 (479)
141 KOG2193 IGF-II mRNA-binding pr 98.2 2.3E-07 5E-12 81.6 -0.2 153 59-257 2-160 (584)
142 KOG1995 Conserved Zn-finger pr 98.2 5.5E-06 1.2E-10 71.8 7.8 81 54-134 62-154 (351)
143 PF08777 RRM_3: RNA binding mo 98.2 6E-06 1.3E-10 60.7 7.0 77 176-258 2-84 (105)
144 PF11608 Limkain-b1: Limkain b 98.1 1.7E-05 3.6E-10 54.8 7.3 66 59-132 3-75 (90)
145 PF11608 Limkain-b1: Limkain b 98.1 2.2E-05 4.7E-10 54.3 7.3 68 176-252 3-75 (90)
146 KOG4660 Protein Mei2, essentia 98.1 3.2E-06 7E-11 76.9 4.1 70 55-127 72-143 (549)
147 KOG1995 Conserved Zn-finger pr 98.0 5E-06 1.1E-10 72.1 4.2 83 172-254 63-154 (351)
148 KOG0106 Alternative splicing f 98.0 4.9E-06 1.1E-10 68.3 3.5 73 53-130 94-167 (216)
149 KOG4660 Protein Mei2, essentia 98.0 6.5E-06 1.4E-10 75.0 4.4 70 173-247 73-143 (549)
150 KOG0128 RNA-binding protein SA 97.9 3.7E-07 8E-12 86.6 -4.8 165 58-248 571-741 (881)
151 KOG0151 Predicted splicing reg 97.9 3.2E-05 7E-10 72.4 7.4 80 172-252 171-255 (877)
152 KOG0151 Predicted splicing reg 97.9 4.3E-05 9.3E-10 71.5 8.2 77 55-131 171-254 (877)
153 PF05172 Nup35_RRM: Nup53/35/4 97.8 3.2E-05 6.9E-10 56.1 4.0 79 174-253 5-91 (100)
154 KOG0115 RNA-binding protein p5 97.6 0.00018 3.8E-09 59.9 6.5 97 110-249 7-109 (275)
155 PF08777 RRM_3: RNA binding mo 97.5 0.00051 1.1E-08 50.5 7.5 71 58-132 1-78 (105)
156 PF08675 RNA_bind: RNA binding 97.5 0.00067 1.5E-08 46.9 7.4 57 53-115 4-60 (87)
157 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.0006 1.3E-08 49.4 7.1 75 56-131 4-89 (100)
158 KOG4849 mRNA cleavage factor I 97.5 0.00015 3.2E-09 62.8 4.6 82 173-254 78-162 (498)
159 KOG4210 Nuclear localization s 97.4 0.00013 2.8E-09 63.2 2.9 76 57-132 184-262 (285)
160 KOG4849 mRNA cleavage factor I 97.3 0.0002 4.3E-09 62.0 3.7 77 57-133 79-161 (498)
161 COG5175 MOT2 Transcriptional r 97.3 0.00073 1.6E-08 58.4 6.8 79 174-254 113-203 (480)
162 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00075 1.6E-08 43.1 4.6 51 59-114 2-53 (53)
163 COG5175 MOT2 Transcriptional r 97.2 0.001 2.2E-08 57.5 6.3 79 56-134 112-203 (480)
164 KOG2314 Translation initiation 97.1 0.00098 2.1E-08 61.2 6.1 73 56-128 56-138 (698)
165 KOG2314 Translation initiation 97.1 0.0028 6.2E-08 58.3 8.3 78 173-251 56-141 (698)
166 PF08952 DUF1866: Domain of un 97.0 0.0028 6E-08 48.9 6.8 59 190-256 51-109 (146)
167 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0019 4.2E-08 41.1 4.6 52 176-234 2-53 (53)
168 PF08952 DUF1866: Domain of un 96.9 0.0035 7.5E-08 48.3 6.7 80 56-142 25-114 (146)
169 KOG2202 U2 snRNP splicing fact 96.7 0.00074 1.6E-08 56.3 1.9 70 190-260 83-154 (260)
170 KOG3152 TBP-binding protein, a 96.7 0.001 2.2E-08 55.5 2.2 69 57-125 73-157 (278)
171 KOG0129 Predicted RNA-binding 96.7 0.0064 1.4E-07 55.5 7.3 81 52-132 364-452 (520)
172 PF10309 DUF2414: Protein of u 96.7 0.0097 2.1E-07 39.0 6.2 52 58-115 5-60 (62)
173 PF10309 DUF2414: Protein of u 96.6 0.016 3.4E-07 38.0 6.8 54 175-235 5-60 (62)
174 KOG0115 RNA-binding protein p5 96.5 0.0039 8.4E-08 52.1 4.2 72 59-130 32-110 (275)
175 PF08675 RNA_bind: RNA binding 96.2 0.023 5E-07 39.4 6.2 54 174-236 8-61 (87)
176 KOG1855 Predicted RNA-binding 96.1 0.0061 1.3E-07 54.4 4.0 63 174-237 230-306 (484)
177 KOG4676 Splicing factor, argin 96.0 0.014 3.1E-07 51.6 5.5 75 176-251 8-86 (479)
178 PF07292 NID: Nmi/IFP 35 domai 95.9 0.012 2.7E-07 41.5 3.8 72 100-197 1-74 (88)
179 KOG1996 mRNA splicing factor [ 95.8 0.037 8E-07 47.2 6.9 79 176-255 282-368 (378)
180 KOG3152 TBP-binding protein, a 95.8 0.0057 1.2E-07 51.1 2.0 71 174-245 73-157 (278)
181 KOG1855 Predicted RNA-binding 95.5 0.013 2.7E-07 52.5 3.4 61 57-117 230-306 (484)
182 KOG2193 IGF-II mRNA-binding pr 95.4 0.027 5.8E-07 50.4 5.1 76 176-257 2-79 (584)
183 KOG4285 Mitotic phosphoprotein 95.2 0.095 2.1E-06 45.0 7.6 76 175-257 197-273 (350)
184 PF07576 BRAP2: BRCA1-associat 95.2 0.31 6.8E-06 36.0 9.5 69 174-243 12-81 (110)
185 KOG2202 U2 snRNP splicing fact 95.2 0.011 2.4E-07 49.4 2.0 68 74-141 84-155 (260)
186 KOG4285 Mitotic phosphoprotein 94.9 0.051 1.1E-06 46.6 5.1 78 58-140 197-276 (350)
187 KOG2416 Acinus (induces apopto 94.9 0.061 1.3E-06 50.2 5.8 82 173-260 442-528 (718)
188 KOG2135 Proteins containing th 94.8 0.015 3.3E-07 52.6 1.8 73 175-253 372-445 (526)
189 PF11767 SET_assoc: Histone ly 94.8 0.21 4.5E-06 33.3 6.8 54 186-248 11-65 (66)
190 KOG1996 mRNA splicing factor [ 94.5 0.078 1.7E-06 45.3 5.3 71 60-130 283-363 (378)
191 KOG2416 Acinus (induces apopto 94.3 0.15 3.2E-06 47.7 6.9 83 54-139 440-527 (718)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.13 2.9E-06 41.3 4.8 69 174-242 6-81 (176)
193 KOG2591 c-Mpl binding protein, 92.4 0.31 6.7E-06 45.3 5.8 69 54-127 171-245 (684)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 92.3 0.26 5.6E-06 39.7 4.8 66 56-121 5-80 (176)
195 KOG2135 Proteins containing th 92.2 0.07 1.5E-06 48.5 1.5 75 55-133 369-445 (526)
196 KOG0804 Cytoplasmic Zn-finger 91.8 0.8 1.7E-05 41.6 7.6 68 175-243 74-142 (493)
197 KOG2591 c-Mpl binding protein, 91.8 0.66 1.4E-05 43.2 7.1 69 174-249 174-247 (684)
198 PF07576 BRAP2: BRCA1-associat 91.5 2.3 5E-05 31.4 8.6 66 58-123 13-81 (110)
199 KOG0112 Large RNA-binding prot 91.5 0.33 7.2E-06 47.6 5.1 75 54-131 451-528 (975)
200 PF11767 SET_assoc: Histone ly 91.4 1.2 2.7E-05 29.6 6.4 53 69-127 11-64 (66)
201 PF03468 XS: XS domain; Inter 90.0 0.39 8.5E-06 35.8 3.4 49 175-226 8-65 (116)
202 PF04847 Calcipressin: Calcipr 89.3 1.2 2.6E-05 36.0 6.0 61 188-254 8-71 (184)
203 KOG2253 U1 snRNP complex, subu 88.1 0.63 1.4E-05 44.2 4.0 70 54-129 36-106 (668)
204 KOG0804 Cytoplasmic Zn-finger 86.4 3.2 6.9E-05 37.9 7.3 70 53-123 69-142 (493)
205 PF04847 Calcipressin: Calcipr 85.8 2.9 6.3E-05 33.8 6.3 58 71-132 8-69 (184)
206 PF15023 DUF4523: Protein of u 85.4 6.1 0.00013 30.5 7.4 73 52-129 80-157 (166)
207 KOG2068 MOT2 transcription fac 84.7 0.44 9.6E-06 41.6 1.1 77 56-132 75-161 (327)
208 PF03880 DbpA: DbpA RNA bindin 84.6 4.5 9.7E-05 27.4 5.9 59 185-251 11-74 (74)
209 PF15023 DUF4523: Protein of u 82.8 4.8 0.0001 31.1 5.9 71 173-250 84-158 (166)
210 KOG2068 MOT2 transcription fac 81.7 0.5 1.1E-05 41.3 0.3 80 174-254 76-163 (327)
211 KOG2253 U1 snRNP complex, subu 77.7 2.4 5.2E-05 40.4 3.4 69 173-250 38-107 (668)
212 PF03880 DbpA: DbpA RNA bindin 77.2 8 0.00017 26.1 5.1 56 68-130 11-73 (74)
213 PF03468 XS: XS domain; Inter 76.7 2.2 4.7E-05 31.8 2.3 56 60-116 10-76 (116)
214 KOG4483 Uncharacterized conser 73.7 12 0.00025 33.8 6.4 57 174-236 390-446 (528)
215 KOG4483 Uncharacterized conser 72.7 6.2 0.00013 35.6 4.4 54 58-116 391-446 (528)
216 PF15513 DUF4651: Domain of un 66.8 12 0.00027 24.4 3.8 19 73-91 9-27 (62)
217 PF07292 NID: Nmi/IFP 35 domai 64.5 9.6 0.00021 26.9 3.2 31 220-250 1-33 (88)
218 KOG4574 RNA-binding protein (c 64.2 4.1 8.8E-05 40.1 1.7 76 176-257 299-377 (1007)
219 PF14111 DUF4283: Domain of un 63.1 4 8.7E-05 31.4 1.3 100 69-202 28-132 (153)
220 KOG4410 5-formyltetrahydrofola 60.4 29 0.00063 30.0 5.9 48 59-108 331-378 (396)
221 KOG4410 5-formyltetrahydrofola 59.9 25 0.00055 30.4 5.5 49 175-228 330-378 (396)
222 KOG2891 Surface glycoprotein [ 58.0 35 0.00075 29.4 6.0 103 99-210 77-195 (445)
223 KOG4574 RNA-binding protein (c 57.9 5.6 0.00012 39.2 1.5 79 58-140 298-380 (1007)
224 cd04908 ACT_Bt0572_1 N-termina 54.3 56 0.0012 21.0 6.6 51 188-241 14-64 (66)
225 KOG3424 40S ribosomal protein 52.2 38 0.00082 25.2 4.6 47 185-232 33-84 (132)
226 KOG4213 RNA-binding protein La 50.4 22 0.00048 28.6 3.5 65 176-246 112-179 (205)
227 PRK14548 50S ribosomal protein 49.3 59 0.0013 22.7 5.1 52 182-235 27-79 (84)
228 PF14893 PNMA: PNMA 44.1 18 0.00038 32.2 2.3 50 57-107 17-72 (331)
229 KOG1295 Nonsense-mediated deca 42.9 34 0.00074 30.7 3.9 67 175-241 7-77 (376)
230 PF02714 DUF221: Domain of unk 42.2 49 0.0011 29.0 4.9 16 100-115 1-16 (325)
231 PRK01178 rps24e 30S ribosomal 40.7 1.1E+02 0.0023 22.1 5.5 48 185-233 29-81 (99)
232 TIGR03636 L23_arch archaeal ri 39.7 1.2E+02 0.0026 20.7 5.4 55 178-234 16-71 (77)
233 KOG4008 rRNA processing protei 38.3 29 0.00062 29.2 2.5 31 173-203 38-68 (261)
234 KOG4008 rRNA processing protei 38.3 25 0.00054 29.5 2.2 36 53-88 35-70 (261)
235 PF00276 Ribosomal_L23: Riboso 37.2 1E+02 0.0022 21.7 5.0 48 180-227 24-83 (91)
236 PF07530 PRE_C2HC: Associated 35.3 48 0.001 22.1 2.8 61 190-252 2-63 (68)
237 PF08156 NOP5NT: NOP5NT (NUC12 33.3 17 0.00036 24.2 0.4 37 190-236 27-63 (67)
238 cd06404 PB1_aPKC PB1 domain is 31.6 1.8E+02 0.0039 20.2 7.4 68 177-250 10-82 (83)
239 KOG2891 Surface glycoprotein [ 30.7 46 0.001 28.7 2.6 46 56-101 147-212 (445)
240 KOG2295 C2H2 Zn-finger protein 30.6 8.4 0.00018 36.2 -1.9 67 56-122 229-299 (648)
241 PF01071 GARS_A: Phosphoribosy 30.0 67 0.0015 26.2 3.4 51 71-122 25-77 (194)
242 PF09707 Cas_Cas2CT1978: CRISP 29.0 88 0.0019 21.9 3.4 50 56-105 23-72 (86)
243 PRK05738 rplW 50S ribosomal pr 27.7 1.4E+02 0.003 21.1 4.3 31 179-209 23-54 (92)
244 COG5470 Uncharacterized conser 27.2 1.5E+02 0.0033 21.2 4.3 43 191-234 24-70 (96)
245 PF11411 DNA_ligase_IV: DNA li 27.0 41 0.00089 19.4 1.2 16 68-83 19-34 (36)
246 cd04883 ACT_AcuB C-terminal AC 27.0 1.8E+02 0.0038 18.6 6.8 53 188-241 14-68 (72)
247 PF01071 GARS_A: Phosphoribosy 26.7 71 0.0015 26.1 3.0 51 188-242 25-77 (194)
248 PF08002 DUF1697: Protein of u 26.5 2.9E+02 0.0063 21.0 7.6 113 59-198 4-122 (137)
249 cd04882 ACT_Bt0572_2 C-termina 26.5 1.7E+02 0.0036 18.2 6.4 51 189-240 13-63 (65)
250 COG3254 Uncharacterized conser 26.3 2.5E+02 0.0054 20.5 5.3 46 188-236 25-70 (105)
251 KOG1295 Nonsense-mediated deca 26.2 81 0.0017 28.5 3.5 66 56-121 5-77 (376)
252 PF11823 DUF3343: Protein of u 25.8 1E+02 0.0022 20.5 3.2 18 219-236 3-20 (73)
253 COG0030 KsgA Dimethyladenosine 24.3 99 0.0021 26.5 3.6 25 175-199 95-119 (259)
254 PF01282 Ribosomal_S24e: Ribos 24.3 1.3E+02 0.0028 20.9 3.6 47 185-232 11-62 (84)
255 KOG2318 Uncharacterized conser 23.8 3.6E+02 0.0079 26.0 7.3 79 172-250 171-304 (650)
256 smart00596 PRE_C2HC PRE_C2HC d 23.4 80 0.0017 21.2 2.2 61 190-252 2-63 (69)
257 PF13046 DUF3906: Protein of u 22.0 89 0.0019 20.6 2.2 34 69-102 29-63 (64)
258 PF00571 CBS: CBS domain CBS d 21.6 79 0.0017 19.2 2.0 32 67-98 13-44 (57)
259 PF10567 Nab6_mRNP_bdg: RNA-re 21.2 1.9E+02 0.0042 25.2 4.6 77 174-251 14-105 (309)
260 PRK11230 glycolate oxidase sub 21.1 3.2E+02 0.0069 25.8 6.6 61 175-236 189-253 (499)
261 cd04909 ACT_PDH-BS C-terminal 20.7 2.4E+02 0.0051 17.9 6.3 52 188-240 14-68 (69)
262 COG5193 LHP1 La protein, small 20.7 49 0.0011 30.1 1.0 61 175-235 174-244 (438)
263 PF15053 Njmu-R1: Mjmu-R1-like 20.5 6.3E+02 0.014 22.7 7.8 45 59-105 38-93 (353)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.1e-33 Score=247.79 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=142.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
......++|||+|||+++||++|+++|+.+| |++|.| .| .+++++|||||+|.++++|++||+ +|+..|.+++|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3456789999999999999999999999999 666755 45 489999999999999999999998 9999999999999
Q ss_pred eecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEE
Q 024584 129 FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i 208 (265)
..+.... ......+|||.|||+++|+++|+++|++||.+.. |.|
T Consensus 182 ~~a~p~~-----------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~-v~i 225 (346)
T TIGR01659 182 SYARPGG-----------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQ-KNI 225 (346)
T ss_pred ecccccc-----------------------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEE-EEE
Confidence 6543210 0013457999999999999999999999998774 677
Q ss_pred eeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEeCCHH
Q 024584 209 ACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELFPSTPD 254 (265)
Q Consensus 209 ~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~~~~~~ 254 (265)
+.+. +++++|+|||+|.+.++|++||+. |++.|.+ ++|.|.++...
T Consensus 226 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 226 LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 7776 899999999999999999999997 9998865 78999888654
No 2
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=244.82 Aligned_cols=248 Identities=29% Similarity=0.483 Sum_probs=194.6
Q ss_pred CCCCccccccccccccCCCCceeecCCCC-CCCCCCCCC---CC--CCCCCCCeEEEcCCCCCCCHHHHHHhhcC-----
Q 024584 13 GVSDGYEVGSKRQRMMEPNPYFAVSSSAS-GFQPYGYGG---GF--PPPPSFPVVRLRGLPFNCTDIDICKFFAG----- 81 (265)
Q Consensus 13 ~~~~~~~~~~~r~r~~~~~~~~~~~~~~~-~~~~~~~~~---~~--~~~~~~~~vfV~nLp~~~te~dL~~~F~~----- 81 (265)
+..+++++|+||||+.+..+|..+..+++ .+--+.+++ .. ....+...|.+++||+++++.|+.+||.+
T Consensus 110 ~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~ 189 (508)
T KOG1365|consen 110 VDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVT 189 (508)
T ss_pred cCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCccc
Confidence 44889999999999999999999988763 122222211 11 11244678999999999999999999973
Q ss_pred CCceeEEEEC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCC
Q 024584 82 LDIVDVLLVN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP 160 (265)
Q Consensus 82 ~giv~v~~~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (265)
.|.++|+++. ++|+.+|.|||.|..+++|+.||.+|...|+.|+|++++++..++.+...+.+..+-.... ..+..
T Consensus 190 ~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~---~sp~~ 266 (508)
T KOG1365|consen 190 GGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGL---TSPLL 266 (508)
T ss_pred CCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCC---CCCCC
Confidence 2345576665 5999999999999999999999999999999999999999999999888776543211000 00000
Q ss_pred CCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCce--eceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-C
Q 024584 161 SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII--EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D 237 (265)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~--~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~ 237 (265)
+ .-+..-.+......||.+++|||++|.+||.+||..|... ...|+++.+..|++.|.|||+|.++++|..|+.+ |
T Consensus 267 p-~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 267 P-GGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred C-CCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHH
Confidence 0 0011112223347799999999999999999999999843 3349999999999999999999999999999999 8
Q ss_pred CCeeCCeEEEEEeCCHHHHHHHHHhhc
Q 024584 238 KMTIGSRYVELFPSTPDEARRAESRSR 264 (265)
Q Consensus 238 g~~l~gr~i~V~~~~~~e~~~~~~r~r 264 (265)
++....|+|+|++++.+||+++..+++
T Consensus 346 k~~mk~RYiEvfp~S~eeln~vL~~g~ 372 (508)
T KOG1365|consen 346 KKLMKSRYIEVFPCSVEELNEVLSGGL 372 (508)
T ss_pred HhhcccceEEEeeccHHHHHHHHhcCc
Confidence 888889999999999999999988764
No 3
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=100.00 E-value=6.8e-33 Score=243.32 Aligned_cols=182 Identities=37% Similarity=0.642 Sum_probs=160.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecchh
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~~ 134 (265)
......|.+++|||++|++||.+||+.|+|..+++...+|+..|.|||+|.+.|++++||+++...|+.|+|+|+.+...
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 45677899999999999999999999999999777778899999999999999999999999999999999999998766
Q ss_pred hhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCC
Q 024584 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG 214 (265)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g 214 (265)
++...... ... .......+|.+++|||+||++||.+||+...++.+.|.++.+..+
T Consensus 87 e~d~~~~~-----------------------~g~-~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg 142 (510)
T KOG4211|consen 87 EADWVMRP-----------------------GGP-NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG 142 (510)
T ss_pred cccccccC-----------------------CCC-CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC
Confidence 54211100 000 011356789999999999999999999999999987888999999
Q ss_pred CceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 215 KATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 215 ~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
+++|.|||+|++.+.|++||.+|...|+.|.|+|+.++..|+.++.
T Consensus 143 R~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 143 RPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred CcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999876
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=1.9e-31 Score=247.21 Aligned_cols=173 Identities=16% Similarity=0.271 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...++|||+|||+++++++|+++|+.|| |.++.+ .| .+|+++|||||+|.+.++|++|++ +|+..|+||.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4578999999999999999999999999 666744 45 489999999999999999999998 9999999999999643
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
..... ..... ...........+|||+|||+++++++|+++|+.||.+.. ++|..+
T Consensus 185 ~~~p~----------a~~~~--------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~s-vrl~~D 239 (612)
T TIGR01645 185 SNMPQ----------AQPII--------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK-CQLARA 239 (612)
T ss_pred ccccc----------ccccc--------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeE-EEEEec
Confidence 21100 00000 000011124468999999999999999999999998774 788887
Q ss_pred C-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 212 P-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 212 ~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
+ +++++|||||+|.+.++|.+||+. |+..|+|+.|+|.++..
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 6 678999999999999999999998 99999999999987653
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.3e-30 Score=237.74 Aligned_cols=174 Identities=22% Similarity=0.309 Sum_probs=142.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
..+..+|||+|||+++++++|+++|+.+| |.+|.+ .+. +|+++|||||+|.+.++|++||++++..|.|++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999 666744 454 799999999999999999999999999999999999765
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
............ ..........+|||+|||+.+|+++|+++|+.||.+.. |.++.+
T Consensus 166 ~~~~~~~~~~~~-----------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~-v~~~~d 221 (457)
T TIGR01622 166 QAEKNRAAKAAT-----------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIED-VQLHRD 221 (457)
T ss_pred chhhhhhhhccc-----------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEE-EEEEEc
Confidence 432111000000 00001123679999999999999999999999998774 778777
Q ss_pred C-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 212 P-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 212 ~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
. +|+++|||||+|.+.++|.+||+. ||..|.|++|.|.++.
T Consensus 222 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 222 PETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6 569999999999999999999997 9999999999999864
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.3e-30 Score=228.73 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC--eeEEEe
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR--RYVEVF 129 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~--r~I~v~ 129 (265)
...++|||+|||.++++++|+++|+.+| ++.+.+ .+ .++.++|||||+|.+.++|++|++ +|+..+.+ ++|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3567899999999999999999999999 656544 44 478999999999999999999998 99999877 567776
Q ss_pred ecchhhh------HHHHhh---hcccCCCCC---------C------CCC---------------CCC-CC----CCCCC
Q 024584 130 RCKRQDY------YNAVAS---EVNYEGIYD---------N------DFH---------------GSP-PP----SRAKR 165 (265)
Q Consensus 130 ~~~~~~~------~~~~~~---~~~~~~~~~---------~------~~~---------------~~~-~~----~~~~~ 165 (265)
.+..... ...... ......... + ..+ ... .+ ....+
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 6543221 000000 000000000 0 000 000 00 00000
Q ss_pred -------------CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHH
Q 024584 166 -------------YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAK 231 (265)
Q Consensus 166 -------------~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~ 231 (265)
.........+.+|||+|||+++|+++|+++|++||.+.. |+|+.+. +|+++|||||+|.+.++|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~-v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQN-VKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEE-EEEeEcCCCCCccceEEEEECCHHHHH
Confidence 000001233457999999999999999999999998875 8888887 8999999999999999999
Q ss_pred HHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 232 RAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 232 ~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
+||+. ||..|+||.|+|.+.+.++
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCC
Confidence 99997 9999999999999887654
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=8.5e-30 Score=227.41 Aligned_cols=160 Identities=20% Similarity=0.273 Sum_probs=136.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
+..+|||+|||+++||+||+++|+.|| |.+|.+ .+ .+|+++|||||+|.+.++|++||+ +|+..|.|+.|.|..+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999 666755 45 479999999999999999999998 99999999999996543
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~ 212 (265)
... ......+|||.|||.++++++|+++|+.||.+.. +.++.+.
T Consensus 82 ~~~-----------------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~-~~~~~~~ 125 (352)
T TIGR01661 82 PSS-----------------------------------DSIKGANLYVSGLPKTMTQHELESIFSPFGQIIT-SRILSDN 125 (352)
T ss_pred ccc-----------------------------------cccccceEEECCccccCCHHHHHHHHhccCCEEE-EEEEecC
Confidence 211 0123457999999999999999999999997764 5666554
Q ss_pred -CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEeCC
Q 024584 213 -DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELFPST 252 (265)
Q Consensus 213 -~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~~~~ 252 (265)
++.++|+|||+|.+.++|++||+. ||..+.| ++|.|.++.
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 788999999999999999999997 9999877 678888764
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.5e-30 Score=221.52 Aligned_cols=196 Identities=20% Similarity=0.325 Sum_probs=146.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccC-CeeEEE
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG-RRYVEV 128 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~-~r~I~v 128 (265)
+++..|.|||+.||.++.|+||..||+..| |-+++| +|+ +|.++|||||+|.+.++|++|++ +|+++|. ||.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 347799999999999999999999999999 778754 574 89999999999999999999999 9999884 888888
Q ss_pred eecch---------------hhhHHHHhh---hcc----cCCCCC---CC--------CCC---------CCC-------
Q 024584 129 FRCKR---------------QDYYNAVAS---EVN----YEGIYD---ND--------FHG---------SPP------- 159 (265)
Q Consensus 129 ~~~~~---------------~~~~~~~~~---~~~----~~~~~~---~~--------~~~---------~~~------- 159 (265)
+.+.. .++.+.... .+. -..+-+ ++ .+. .+.
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 65431 122221111 000 000000 00 000 000
Q ss_pred ----CCCCC-CCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHH
Q 024584 160 ----PSRAK-RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234 (265)
Q Consensus 160 ----~~~~~-~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al 234 (265)
.|... ...+.+.+.....|||+||+.++|++.|+++|+.||.++. |+.++ -||||.|.++++|.+||
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR-Vkk~r-------DYaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVER-VKKPR-------DYAFVHFAEREDAVKAM 310 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEE-eeccc-------ceeEEeecchHHHHHHH
Confidence 12211 1223345667789999999999999999999999998874 55553 39999999999999999
Q ss_pred Hh-CCCeeCCeEEEEEeCCHHHHH
Q 024584 235 CK-DKMTIGSRYVELFPSTPDEAR 257 (265)
Q Consensus 235 ~~-~g~~l~gr~i~V~~~~~~e~~ 257 (265)
+. ||+.|.|..|+|.++++..-+
T Consensus 311 ~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHhcCceecCceEEEEecCChhhh
Confidence 98 999999999999999987643
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=8.2e-29 Score=233.87 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=150.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC----CeeEE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG----RRYVE 127 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~----~r~I~ 127 (265)
....++|||+|||+++|+++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|.+|++ +|+..+. ++.|.
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 34567899999999999999999999999 556644 46789999999999999999999998 9999999 99999
Q ss_pred EeecchhhhHHHHhhh-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceE
Q 024584 128 VFRCKRQDYYNAVASE-VNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206 (265)
Q Consensus 128 v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v 206 (265)
|..+..+.-....... .... ...........+|||+|||+++|+++|+++|+.||.+.. |
T Consensus 255 v~~a~~k~er~~~~~~~~~~~------------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~-~ 315 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEEL------------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITS-A 315 (562)
T ss_pred eecccChhhhHHHHHhhHHhh------------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEE-E
Confidence 9776544322111000 0000 000011234568999999999999999999999998774 8
Q ss_pred EEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHH
Q 024584 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRA 259 (265)
Q Consensus 207 ~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~ 259 (265)
.++.+.+|+++|||||+|.+.++|.+|+.. |++.|+|++|.|.++.+++-..+
T Consensus 316 ~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~ 369 (562)
T TIGR01628 316 KVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRA 369 (562)
T ss_pred EEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHH
Confidence 888888999999999999999999999997 99999999999999998775544
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=5.9e-29 Score=234.84 Aligned_cols=160 Identities=20% Similarity=0.306 Sum_probs=137.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
.+|||+|||+++||++|+++|+.+| |+.|++ .|. +++++|||||+|.+.++|++||+ +|+..+.|++|+|.++...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999 666755 454 69999999999999999999998 9999999999999765422
Q ss_pred hhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCC
Q 024584 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG 214 (265)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g 214 (265)
... ......+|||+|||.++|+++|+++|+.||.+.. |.++.+.+|
T Consensus 81 ~~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~-~~i~~~~~g 126 (562)
T TIGR01628 81 PSL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS-CKVATDENG 126 (562)
T ss_pred ccc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcce-eEeeecCCC
Confidence 100 0012347999999999999999999999997764 788888899
Q ss_pred CceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 215 KATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 215 ~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
+++|||||+|.+.++|.+|+++ ||..++++.|.|....
T Consensus 127 ~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 127 KSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 9999999999999999999998 9999999999986543
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.8e-28 Score=198.36 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=142.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
.+....-.-|||+.|...++.++|++.|.+|| |.+.++ .| .++++|||+||.|.+.++|+.||+ |||+=|++|.|+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 34444567899999999999999999999999 666644 45 489999999999999999999999 999999999999
Q ss_pred EeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEE
Q 024584 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207 (265)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~ 207 (265)
-.+++++... ....+..++.-+. .....+++|||+|++.-+||++|++.|++||.+-+ |+
T Consensus 136 TNWATRKp~e-----~n~~~ltfdeV~N--------------Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E-VR 195 (321)
T KOG0148|consen 136 TNWATRKPSE-----MNGKPLTFDEVYN--------------QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE-VR 195 (321)
T ss_pred ccccccCccc-----cCCCCccHHHHhc--------------cCCCCCceEEeCCcCccccHHHHHHhcccCCcceE-EE
Confidence 9888766410 0000111111111 12247789999999999999999999999996654 88
Q ss_pred EeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 208 IACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 208 i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
+.++ +|||||.|.+.|.|..||.. |+++|+|..|++++-+.
T Consensus 196 vFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 196 VFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred Eecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 8754 58999999999999999998 99999999999987643
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=9.4e-28 Score=222.36 Aligned_cols=159 Identities=22% Similarity=0.272 Sum_probs=131.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC-CeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG-RRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~-~r~I~v~~ 130 (265)
+...++|||+|||++++|++|+++|+.+| |+++.| +|.+|+++|||||+|.+.++|++||+ +|+..+. ++.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 45679999999999999999999999999 667744 57899999999999999999999999 9988875 67666632
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCc-eeceEEEe
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI-IEDKIHIA 209 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~-~~~~v~i~ 209 (265)
+. ..++|||+|||+++|+++|.++|+.++. +.+ +.+.
T Consensus 135 S~-----------------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~-vIv~ 172 (578)
T TIGR01648 135 SV-----------------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVD-VIVY 172 (578)
T ss_pred cc-----------------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceE-EEEe
Confidence 21 3468999999999999999999999863 332 3333
Q ss_pred eC--CCCCceeEEEEEECCHHHHHHHHHh-C-C-CeeCCeEEEEEeCCHHH
Q 024584 210 CR--PDGKATGEAYVEFVSVEEAKRAMCK-D-K-MTIGSRYVELFPSTPDE 255 (265)
Q Consensus 210 ~~--~~g~~~G~afV~F~s~~~A~~Al~~-~-g-~~l~gr~i~V~~~~~~e 255 (265)
.. ..++++|||||+|.++++|.+|+++ + + ..|.|+.|.|.++.+++
T Consensus 173 ~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 173 HSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred ccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 22 3568899999999999999999985 3 3 46889999999887653
No 13
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=210.23 Aligned_cols=236 Identities=40% Similarity=0.630 Sum_probs=178.1
Q ss_pred CCccccccccccccCCCCceeecCCCCCCC--CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee--E-EE
Q 024584 15 SDGYEVGSKRQRMMEPNPYFAVSSSASGFQ--PYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD--V-LL 89 (265)
Q Consensus 15 ~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~--v-~~ 89 (265)
.+.++.|+|++|+.+.+||+.|-.+..... -+.+.+ ...+.++..|.+++|||.||++||.+||+.+.|+. | ++
T Consensus 59 eedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g-~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~ 137 (510)
T KOG4211|consen 59 EEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGG-PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLP 137 (510)
T ss_pred hHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCC-CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeee
Confidence 345678999999999999999977642111 111111 11226789999999999999999999999999876 3 44
Q ss_pred ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecchhhhHHHHhhh---cccCCCCCCCCC-----------
Q 024584 90 VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASE---VNYEGIYDNDFH----------- 155 (265)
Q Consensus 90 ~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------- 155 (265)
+++.+++.|.|||+|++.+.|++||+.|...|+.|+|+|++++..++....... +.++.+++....
T Consensus 138 ~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~ 217 (510)
T KOG4211|consen 138 MDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGR 217 (510)
T ss_pred ccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCcccccccccc
Confidence 678999999999999999999999999999999999999999998887665321 111222211000
Q ss_pred -------------------------------CC--------CC----CCCCCCCCCCC-CCCCccEEEEcCCCCCCCHHH
Q 024584 156 -------------------------------GS--------PP----PSRAKRYNDKD-QMEHTEILKMRGLPFSVKKSE 191 (265)
Q Consensus 156 -------------------------------~~--------~~----~~~~~~~~~~~-~~~~~~~l~v~nLp~~~t~~d 191 (265)
.+ .+ +.+........ .......++.++||+.+++.+
T Consensus 218 ~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~d 297 (510)
T KOG4211|consen 218 DPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATEND 297 (510)
T ss_pred CCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcc
Confidence 00 00 00000000001 112237899999999999999
Q ss_pred HHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 192 L~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
|..+|+..... .|+|-..++|+.+|.|+|+|.+.++|..||.+++..++.|.|++++...
T Consensus 298 i~nfFspl~p~--~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 298 IANFFSPLNPY--RVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLNGA 357 (510)
T ss_pred hhhhcCCCCce--eEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecccCC
Confidence 99999996655 4888888999999999999999999999999999999999999998754
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=5.1e-27 Score=219.27 Aligned_cols=190 Identities=13% Similarity=0.190 Sum_probs=135.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC----c-----eeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeE
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD----I-----VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYV 126 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g----i-----v~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I 126 (265)
....+|||+|||+++|+++|++||+.+. . ...+.....++.+|||||+|.+.++|..||++|+..|.|++|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l 252 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFL 252 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCcee
Confidence 4567999999999999999999999641 0 001111113456899999999999999999999999999999
Q ss_pred EEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceE
Q 024584 127 EVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206 (265)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v 206 (265)
.|..... +................... .....+...........+|||+|||+.+|+++|+++|+.||.+.. +
T Consensus 253 ~v~r~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-~ 325 (509)
T TIGR01642 253 KIRRPHD--YIPVPQITPEVSQKNPDDNA----KNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA-F 325 (509)
T ss_pred EecCccc--cCCccccCCCCCCCCCcccc----cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE-E
Confidence 9964432 11000000000000000000 000000011112245679999999999999999999999997764 7
Q ss_pred EEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 207 HIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 207 ~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
.|+.+. +|.++|||||+|.+.++|..||+. ||..|+|+.|.|.++.
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 777775 799999999999999999999997 9999999999998874
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=212.17 Aligned_cols=186 Identities=23% Similarity=0.324 Sum_probs=146.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCcee-EEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~giv~-v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
.||||++||++++.++|.++|+.+|++. +.++ +. .+.++||+||+|+-.||++.|++ .++..|+||.|.|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999665 5554 43 56899999999999999999999 8999999999999777654
Q ss_pred hhHHHHhhhcccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC
Q 024584 135 DYYNAVASEVNYEGIYDNDFHGSPP--PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212 (265)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~ 212 (265)
.-.+.. +........ ..+..+. ......+.++|+|+||||.+.++||+.+|+.||.|.+ |.|+...
T Consensus 86 ~r~e~~----------~~~e~~~veK~~~q~~~~-k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~E-i~IP~k~ 153 (678)
T KOG0127|consen 86 ARSEEV----------EKGENKAVEKPIEQKRPT-KAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVE-IVIPRKK 153 (678)
T ss_pred ccchhc----------ccccchhhhcccccCCcc-hhhccCccceEEeecCCcccCcHHHHHHHhhcceEEE-EEcccCC
Confidence 321100 000000000 0000010 1111234689999999999999999999999998775 8899888
Q ss_pred CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHH
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEA 256 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~ 256 (265)
+|+..|||||+|....+|..||+. |+..|+||+|.|.|+-.+..
T Consensus 154 dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 154 DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 888889999999999999999998 99999999999999887643
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.5e-27 Score=206.81 Aligned_cols=196 Identities=22% Similarity=0.371 Sum_probs=146.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
...|.|+||||.+.++||..+|+.|| +++|.|- ..+|+-.|||||+|....+|.+||+ +|+..|+||+|.|.++..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 67899999999999999999999999 7888664 5678877999999999999999999 9999999999999998776
Q ss_pred hhHHHHhhh-------------ccc----CC--------CCCC---CCCCC----------C-------CC---CCCCC-
Q 024584 135 DYYNAVASE-------------VNY----EG--------IYDN---DFHGS----------P-------PP---SRAKR- 165 (265)
Q Consensus 135 ~~~~~~~~~-------------~~~----~~--------~~~~---~~~~~----------~-------~~---~~~~~- 165 (265)
+.++..+.. ... .+ ..+. ..... . .. +..++
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 655443210 000 00 0000 00000 0 00 00000
Q ss_pred ---CC---CCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhC-
Q 024584 166 ---YN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKD- 237 (265)
Q Consensus 166 ---~~---~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~- 237 (265)
.. .........+|||+||||++|+++|.++|+.||.+.+ +.|+.++ +++++|+|||.|.+..+|..||+.-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~y-a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKY-AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhcccee-EEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 00 0122234589999999999999999999999998886 4555555 9999999999999999999999852
Q ss_pred -----C-CeeCCeEEEEEeCCHH
Q 024584 238 -----K-MTIGSRYVELFPSTPD 254 (265)
Q Consensus 238 -----g-~~l~gr~i~V~~~~~~ 254 (265)
| ..|.||.|.|.++-..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEeccEEeeeeccch
Confidence 3 6789999999877644
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=5.2e-26 Score=210.56 Aligned_cols=193 Identities=17% Similarity=0.216 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLPF-NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp~-~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
++.++|||+|||+ .+|+++|+++|+.|| |..|.++.. .+|+|||+|.+.++|..||+ ||+..|.|+.|.|..+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4678999999998 699999999999999 666755421 35899999999999999998 99999999999998765
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCC-CC--CCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCc-eeceEEE
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK-RY--NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKI-IEDKIHI 208 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~-~~~~v~i 208 (265)
.....................+.. ....+.+ +. .......+..+|||+|||+++|+++|+++|+.||. ....|++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~~~-~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 350 QQNVQPPREGQLDDGLTSYKDYSS-SRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred cccccCCCCCcCcCCCcccccccC-CccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 432211100000000000000000 0000000 00 00011245678999999999999999999999996 2334666
Q ss_pred eeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeE------EEEEeCCH
Q 024584 209 ACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRY------VELFPSTP 253 (265)
Q Consensus 209 ~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~------i~V~~~~~ 253 (265)
....++ .+|+|||+|.+.++|.+||.. |++.|.++. |.|..+++
T Consensus 429 ~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 429 FPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred ecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 544433 689999999999999999997 999999985 88887754
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=5.7e-26 Score=210.52 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=131.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC--ceeEEEEC---CCCCceeEEEEEeCCHHHHHHHHH-hCC--CccCCeeEE
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVN---KNGRFSGEAFVVFAGPIQVEFALQ-RDR--QNMGRRYVE 127 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g--iv~v~~~~---~~g~~kG~afV~F~~~e~A~~Al~-~~~--~~l~~r~I~ 127 (265)
...++|||+|||+++|+++|.+.|+.++ ++++++.+ ..++++|||||+|.+.++|.+|++ ++. ..+.++.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 3578999999999999999999999885 56655543 357889999999999999999997 543 357899999
Q ss_pred EeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcC--Cceece
Q 024584 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDK 205 (265)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~--g~~~~~ 205 (265)
|.++....- .+........+|||+|||+++|+++|+++|+.| |.++.
T Consensus 216 VdwA~p~~~------------------------------~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r- 264 (578)
T TIGR01648 216 VDWAEPEEE------------------------------VDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER- 264 (578)
T ss_pred EEeeccccc------------------------------ccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE-
Confidence 976543210 001112345789999999999999999999999 87663
Q ss_pred EEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 206 v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
|.++ ++||||+|.+.++|++||+. |+..|+|+.|+|.++.+.+
T Consensus 265 V~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 265 VKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred EEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 5543 46999999999999999997 9999999999999998754
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=9.3e-26 Score=208.89 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=131.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH---hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ---RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~---~~~~~l~~r~I~v~~~~ 132 (265)
+..+|||+|||++++|++|+++|++|| |..+.++. ++|+|||+|.+.++|++|++ +++..|+|++|.|..+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 357899999999999999999999999 55666553 46899999999999999998 37788999999998775
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~ 212 (265)
.++... ... .. ..........+|+|.||++.+|+++|+++|+.||.+.. |.|..+.
T Consensus 77 ~~~~~~--------~~~--~~-------------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~-v~i~~~~ 132 (481)
T TIGR01649 77 SQEIKR--------DGN--SD-------------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR-IVTFTKN 132 (481)
T ss_pred Cccccc--------CCC--Cc-------------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE-EEEEecC
Confidence 432110 000 00 00011123457999999999999999999999998774 6666543
Q ss_pred CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEeCCHHH
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELFPSTPDE 255 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~~~~~~e 255 (265)
.+|+|||+|.+.++|.+|++. ||..|.+ +.|+|.+++...
T Consensus 133 ---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 133 ---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred ---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 247999999999999999997 9999953 689998887644
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=200.01 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=139.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCc-cC--CeeEE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLVNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQN-MG--RRYVE 127 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~-l~--~r~I~ 127 (265)
..+.-++||+.+|..++|.||+++|++|| +.+| ++.|+ ++.++|||||+|.+.++|.+|+. +|+.. |- ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35567899999999999999999999999 5566 55575 89999999999999999999998 66554 53 45788
Q ss_pred EeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEE
Q 024584 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207 (265)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~ 207 (265)
|+++..+.. ......+|||+-|+..+||.||+++|+.||.+++ +.
T Consensus 111 vk~Ad~E~e----------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied-~~ 155 (510)
T KOG0144|consen 111 VKYADGERE----------------------------------RIVEERKLFVGMLSKQCTENEVREIFSRFGHIED-CY 155 (510)
T ss_pred ecccchhhh----------------------------------ccccchhhhhhhccccccHHHHHHHHHhhCccch-hh
Confidence 876653310 1124568999999999999999999999999986 88
Q ss_pred EeeCCCCCceeEEEEEECCHHHHHHHHHh-CCC-eeCC--eEEEEEeCCHHH
Q 024584 208 IACRPDGKATGEAYVEFVSVEEAKRAMCK-DKM-TIGS--RYVELFPSTPDE 255 (265)
Q Consensus 208 i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~-~l~g--r~i~V~~~~~~e 255 (265)
|++++.+.+||||||+|.+.|-|..||+. |++ ++.| .+|.|..+.++.
T Consensus 156 ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 156 ILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred heecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 99999999999999999999999999997 764 6666 569998887653
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=3.9e-26 Score=177.24 Aligned_cols=166 Identities=13% Similarity=0.234 Sum_probs=141.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
..+.+|||+||+..++++-|.++|-+.| ++.+.+ .|. +...+|||||+|.+.|+|+-|++ +|...|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4578999999999999999999999999 667755 344 67899999999999999999999 9988899999999776
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
+... .....+..|||+||.+.+++..|.+.|+.||.....-.++++
T Consensus 87 s~~~----------------------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAHQ----------------------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred cccc----------------------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 5211 111234689999999999999999999999955433456667
Q ss_pred C-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 212 P-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 212 ~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
+ +|.++|||||.|++.+.+.+||.. ||..+++|+|+|.++.++.
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 6 689999999999999999999998 9999999999999887653
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=8.3e-25 Score=204.37 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=140.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
.....+|||+|||+.+|+++|+++|+.|| |..+.+ .+ .+|.++|||||+|.+.++|+.||+ +|+..|+++.|.|..
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999 555644 45 489999999999999999999998 999999999999977
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC----------CHHHHHHhhhcCC
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV----------KKSEIVQFFKDYK 200 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~----------t~~dL~~~F~~~g 200 (265)
+........ ........+ .. .................+.+|+|.||+..- ..++|+++|+.||
T Consensus 372 a~~~~~~~~----~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G 444 (509)
T TIGR01642 372 ACVGANQAT----IDTSNGMAP-VT--LLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG 444 (509)
T ss_pred CccCCCCCC----ccccccccc-cc--cccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC
Confidence 643211000 000000000 00 000000000000112356789999997431 2368999999999
Q ss_pred ceeceEEEeeCC----CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHH
Q 024584 201 IIEDKIHIACRP----DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEAR 257 (265)
Q Consensus 201 ~~~~~v~i~~~~----~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~ 257 (265)
.+.. |.|+.+. .+...|+|||+|.+.++|++||.. ||..|+||.|.|.+.+.....
T Consensus 445 ~v~~-v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 445 PLIN-IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred CeeE-EEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence 8874 7777542 345689999999999999999997 999999999999999887654
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.9e-25 Score=180.42 Aligned_cols=200 Identities=18% Similarity=0.209 Sum_probs=145.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCC--ee
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLVNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR--RY 125 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~--r~ 125 (265)
+.....+..|||.+||..+|..||.++|++|| |+.- +++|. +|.++|.+||.|...++|+.|+. +||+.--| .+
T Consensus 121 Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tep 200 (360)
T KOG0145|consen 121 SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEP 200 (360)
T ss_pred ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCC
Confidence 34446678899999999999999999999999 6653 45565 89999999999999999999999 99998654 57
Q ss_pred EEEeecchhhhHHHHhh--h--cccCCCCCCCCCC--------CCC-----CCCCCCC-----------CCCCCCCCccE
Q 024584 126 VEVFRCKRQDYYNAVAS--E--VNYEGIYDNDFHG--------SPP-----PSRAKRY-----------NDKDQMEHTEI 177 (265)
Q Consensus 126 I~v~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~--------~~~-----~~~~~~~-----------~~~~~~~~~~~ 177 (265)
|.|+.+.........+. . ......+...-++ ..+ ..+..|. .-.......+|
T Consensus 201 ItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~c 280 (360)
T KOG0145|consen 201 ITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWC 280 (360)
T ss_pred eEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeE
Confidence 88876643211100000 0 0000000000000 000 0011110 01122345789
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
|||.||..+++|.-|.++|.+||.+.. |++++|. +.+++|||||.+.+.++|..||.. ||+.|++|.|+|..-+
T Consensus 281 iFvYNLspd~de~~LWQlFgpFGAv~n-VKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 281 IFVYNLSPDADESILWQLFGPFGAVTN-VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred EEEEecCCCchHhHHHHHhCcccceee-EEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 999999999999999999999998874 9999998 489999999999999999999997 9999999999996543
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1.8e-23 Score=192.95 Aligned_cols=199 Identities=18% Similarity=0.226 Sum_probs=140.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
...+|||+|||+++|+++|+++|+.|| |..+.+ .+. +|+++|||||+|.+.++|.+|++ +|+..|.|++|.|..+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 378999999999999999999999999 556644 454 67999999999999999999998 99999999999998854
Q ss_pred hhhhHHHHhhhcc------cC-----------------------CC-CCCCCC----------C---C-CCC-----CC-
Q 024584 133 RQDYYNAVASEVN------YE-----------------------GI-YDNDFH----------G---S-PPP-----SR- 162 (265)
Q Consensus 133 ~~~~~~~~~~~~~------~~-----------------------~~-~~~~~~----------~---~-~~~-----~~- 162 (265)
............. .. .. .++... . . ..+ ..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 2211000000000 00 00 000000 0 0 000 00
Q ss_pred -----CCCCCCCCCCCCccEEEEcCCCCCCC----------HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCH
Q 024584 163 -----AKRYNDKDQMEHTEILKMRGLPFSVK----------KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV 227 (265)
Q Consensus 163 -----~~~~~~~~~~~~~~~l~v~nLp~~~t----------~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~ 227 (265)
..............+|+|.||....+ .+||++.|++||.+.. |.+. .....|++||+|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~-v~v~---~~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH-IYVD---TKNSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE-EEEe---CCCCceeEEEEECCH
Confidence 00000011224568999999965544 3789999999997763 5554 235679999999999
Q ss_pred HHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHH
Q 024584 228 EEAKRAMCK-DKMTIGSRYVELFPSTPDEARRA 259 (265)
Q Consensus 228 ~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~ 259 (265)
++|.+|++. ||..|+||.|.|.+.+.+.+...
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhh
Confidence 999999998 99999999999999998887654
No 25
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=2.6e-24 Score=185.22 Aligned_cols=174 Identities=20% Similarity=0.345 Sum_probs=148.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
..++|||++|+|+++|+.|+++|..+| +.++++ .|+ +++++||+||+|++++...++|....+.|.+|.|++.++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 688999999999999999999999999 667655 454 79999999999999999999999888889999999987765
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP- 212 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~- 212 (265)
.+... .........+|||++||.++++++++++|.+||.+.+ +.++.|.
T Consensus 85 r~~~~-----------------------------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~-~~~~~d~~ 134 (311)
T KOG4205|consen 85 REDQT-----------------------------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD-VVIMYDKT 134 (311)
T ss_pred ccccc-----------------------------ccccccceeEEEecCcCCCCchHHHhhhhhccceeEe-eEEeeccc
Confidence 43110 0001125679999999999999999999999997765 5555555
Q ss_pred CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
+.+++||+||+|.+++++++++...-+.|+++.++|..+.++++....
T Consensus 135 ~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 135 TSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ccccccceeeEeccccccceecccceeeecCceeeEeeccchhhcccc
Confidence 789999999999999999999999999999999999999999887644
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=5.2e-23 Score=168.05 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=135.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee-EEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-VLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~-v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
.+..+.|.|-=||.++|++||+.+|...|.++ +.+ .|+ +|.+-||+||.|.+++||++|+. +||..|..+.|+|..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45677899999999999999999999999555 655 465 89999999999999999999999 999999999999976
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEee
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
+.+.. .......|||.+||.+.|..||.++|++||-+..+ +|+.
T Consensus 118 ARPSs-----------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItS-RiL~ 161 (360)
T KOG0145|consen 118 ARPSS-----------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITS-RILV 161 (360)
T ss_pred ccCCh-----------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhh-hhhh
Confidence 65321 12345579999999999999999999999944333 4444
Q ss_pred CC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe--EEEEEeCC
Q 024584 211 RP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR--YVELFPST 252 (265)
Q Consensus 211 ~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr--~i~V~~~~ 252 (265)
|. +|.++|.|||.|+.+++|+.||+. ||..-.|+ +|.|..+.
T Consensus 162 dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 162 DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 44 899999999999999999999997 99887764 58886543
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-22 Score=180.50 Aligned_cols=152 Identities=19% Similarity=0.298 Sum_probs=134.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQD 135 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~ 135 (265)
.+|||+ +++||..|.++|+++| ++.+++ .|. + +-|||||.|.++++|++||+ +|...+.|++|++.++.+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-
Confidence 468999 9999999999999999 666744 566 5 99999999999999999999 9999999999999776532
Q ss_pred hHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCC
Q 024584 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK 215 (265)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~ 215 (265)
...|||+||+.++|..+|.++|+.||.+. +|.+..+.+|
T Consensus 76 ---------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~il-S~kv~~~~~g- 114 (369)
T KOG0123|consen 76 ---------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNIL-SCKVATDENG- 114 (369)
T ss_pred ---------------------------------------CceeeecCCCcccCcHHHHHHHHhhcCee-EEEEEEcCCC-
Confidence 11299999999999999999999999766 4899999998
Q ss_pred ceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHH
Q 024584 216 ATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARR 258 (265)
Q Consensus 216 ~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~ 258 (265)
++|+ ||+|+++++|.+||.+ ||..+.|+.|-|-+...++.+.
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999 9999999999999998 9999999999998887776543
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=2.2e-23 Score=190.35 Aligned_cols=175 Identities=20% Similarity=0.303 Sum_probs=141.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCC----CceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNG----RFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g----~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
++|||+||+|++|.++|..+|...| |..+.| ..+++ .|.|||||+|.++++|+.|++ |+|+.|.|+.|.|..+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999 666644 33333 366999999999999999999 9999999999999877
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
....-. .+. ...........|.|+|||+.++..+|+++|..||.+. +|+|+..
T Consensus 596 ~~k~~~-----~~g---------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlk-svRlPKK 648 (725)
T KOG0110|consen 596 ENKPAS-----TVG---------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLK-SVRLPKK 648 (725)
T ss_pred cCcccc-----ccc---------------------cccccccccceeeeeccchHHHHHHHHHHHhccccee-eeccchh
Confidence 621100 000 0111112357899999999999999999999999776 4888876
Q ss_pred -CCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 212 -PDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 212 -~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
..+-++|||||+|-++.+|.+|+.. ..++|.||.|.+.++....+.+++
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e~~ 699 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTMEAL 699 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchHHHHH
Confidence 3566799999999999999999997 899999999999999877665554
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.4e-23 Score=177.15 Aligned_cols=169 Identities=17% Similarity=0.304 Sum_probs=139.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
-|.|||+.+.|+..|+.|+..|.+|| |..|-+ +|+ ++++||||||+|+-+|.|+.|++ ||+..++||.|+|.+.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 68999999999999999999999999 445644 565 89999999999999999999999 999999999999965543
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~ 213 (265)
-...+..-..+.. ....-++|||..+..+.+++||+.+|+.||.+.. +.+...++
T Consensus 193 mpQAQpiID~vqe------------------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~-C~LAr~pt 247 (544)
T KOG0124|consen 193 MPQAQPIIDMVQE------------------------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK-CQLARAPT 247 (544)
T ss_pred CcccchHHHHHHH------------------------HHHhhheEEeeecCCCccHHHHHHHHHhhcceee-EEeeccCC
Confidence 2211111111100 1123468999999999999999999999997764 78888885
Q ss_pred -CCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 214 -GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 214 -g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
+.++||||++|.+..+...|+.. |-..|+|.+|+|-.+
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 46899999999999999999997 989999999999654
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-21 Score=173.38 Aligned_cols=175 Identities=19% Similarity=0.259 Sum_probs=147.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
...|||+||+.+++..+|.++|+.|| |+.|.+ .+.+| ++|| ||+|+++++|++|++ +||..+.++.|.|.....+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 33499999999999999999999999 888855 57788 9999 999999999999999 9999999999999777665
Q ss_pred hhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCC
Q 024584 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDG 214 (265)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g 214 (265)
+...+...+ ....-..+++.|++.+++++.|.++|..+|.+. ++.++.+..|
T Consensus 154 ~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~-s~~v~~~~~g 205 (369)
T KOG0123|consen 154 EEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT-SVAVMRDSIG 205 (369)
T ss_pred hhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcce-EEEEeecCCC
Confidence 543211111 112345699999999999999999999999776 4788888889
Q ss_pred CceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHHHHh
Q 024584 215 KATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAESR 262 (265)
Q Consensus 215 ~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~~~r 262 (265)
+++||+||.|.++++|..|++. |++.+++..+.|..+..+..+....+
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~ 254 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELK 254 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHh
Confidence 9999999999999999999998 99999999999988877544444433
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=4.3e-22 Score=165.02 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=127.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhhh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQDY 136 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~~ 136 (265)
..|||+|||..+++.+|+.+|++|| ++++-|+ |.||||..++...|+.|+. +|+..|.|..|.|..+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee------cccceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 4699999999999999999999999 7787544 2499999999999999999 9999999999999766532
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCc
Q 024584 137 YNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA 216 (265)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~ 216 (265)
.....+|+|.||.+.+|.++|+..|++||.+.+ +.|++
T Consensus 75 -----------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpvie-cdivk------ 112 (346)
T KOG0109|consen 75 -----------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIE-CDIVK------ 112 (346)
T ss_pred -----------------------------------CCCccccccCCCCccccCHHHhhhhcccCCcee-eeeec------
Confidence 124568999999999999999999999997765 67764
Q ss_pred eeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 217 TGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 217 ~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
+++||.|.-.++|..|++. |++.+.|+++.|.+++.
T Consensus 113 -dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 113 -DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred -ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 4999999999999999996 99999999999998875
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=8.4e-22 Score=175.74 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=143.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
+.....+||+--|+..++.-||.+||+.+| +.+|+++ |. .++++|.|||+|.+.+.+..||.+.|+.+.|-+|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 345578999999999999999999999999 6677554 54 79999999999999999999999999999999999977
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEee
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
........+......+. +....+-..|||+||.+++|+++|+..|++||.++. |.+..
T Consensus 255 sEaeknr~a~~s~a~~~---------------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~-v~l~~ 312 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQG---------------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN-VQLTK 312 (549)
T ss_pred cHHHHHHHHhccccccc---------------------cccccchhhhhhcccccCchHHHHhhhccCccccee-eeecc
Confidence 65443331111110000 011112223999999999999999999999998874 88888
Q ss_pred CC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 211 RP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 211 ~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
|. +|+++|||||+|.+.++|.+|++. ||-.|-||.|.|...+
T Consensus 313 d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 313 DSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred ccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 87 999999999999999999999887 9999999999986543
No 33
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=1.1e-21 Score=167.80 Aligned_cols=190 Identities=37% Similarity=0.653 Sum_probs=153.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee--E-EEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD--V-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~--v-~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
...+..|..++|||..++.+|..||..+.+.. + +..+..|+..|+|.|.|.++|.-+.|++.+...+++|+|+|..+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 35678899999999999999999999988775 2 33456788889999999999999999999999999999999998
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhc---CCceeceEEE
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD---YKIIEDKIHI 208 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~---~g~~~~~v~i 208 (265)
+..++........... +.. .+-...-.|.+++||+++|+.|+.+||.+ .+.-.+.|.+
T Consensus 137 ~ge~f~~iagg~s~e~---------------~~f----lsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEA---------------APF----LSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheEecCCccccC---------------CCC----CCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 8776543211110000 000 00123346888999999999999999964 2322335888
Q ss_pred eeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHHHHHHHHHhh
Q 024584 209 ACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRS 263 (265)
Q Consensus 209 ~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~e~~~~~~r~ 263 (265)
+..++|+.+|.|||.|..+++|..||.+|...|+-|+|+|+.++..|+..+..|.
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~ 252 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNRE 252 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhh
Confidence 8888999999999999999999999999999999999999999999999988764
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.8e-19 Score=147.96 Aligned_cols=201 Identities=16% Similarity=0.201 Sum_probs=141.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC---CeeEEEe
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG---RRYVEVF 129 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~---~r~I~v~ 129 (265)
-++.+|||+-|...-.|+|++.+|..|| +.++.+ ..++|.+||||||+|.+.-+|+.||. +|+..-. ...+.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4689999999999999999999999999 555644 45799999999999999999999999 9888743 3456665
Q ss_pred ecchh-hh-HHHHhhh-------------------------------cccC-CC--------------------------
Q 024584 130 RCKRQ-DY-YNAVASE-------------------------------VNYE-GI-------------------------- 149 (265)
Q Consensus 130 ~~~~~-~~-~~~~~~~-------------------------------~~~~-~~-------------------------- 149 (265)
.+... +- .+..+.. .... .+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 55322 10 0000000 0000 00
Q ss_pred --CCCC-------------------------CCCCCCCCC------------------CC--------------------
Q 024584 150 --YDND-------------------------FHGSPPPSR------------------AK-------------------- 164 (265)
Q Consensus 150 --~~~~-------------------------~~~~~~~~~------------------~~-------------------- 164 (265)
..+. +....+.+. +.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000 000000000 00
Q ss_pred ---------------C---CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECC
Q 024584 165 ---------------R---YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226 (265)
Q Consensus 165 ---------------~---~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s 226 (265)
+ .........++.|||..||...++.+|.++|-+||.+...-+++...++.++.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0 0011223567899999999999999999999999966644444544589999999999999
Q ss_pred HHHHHHHHHh-CCCeeCCeEEEEEeCCHHHH
Q 024584 227 VEEAKRAMCK-DKMTIGSRYVELFPSTPDEA 256 (265)
Q Consensus 227 ~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~ 256 (265)
+.+|..||.. ||..|+=++|.|.+-.+++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999998 99999999999988777653
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=7e-19 Score=137.23 Aligned_cols=169 Identities=20% Similarity=0.197 Sum_probs=122.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
...++|||+|||.++-|.||.++|.+|| |++|-|.++.| ...||||+|+++.+|+.|+. .++..+++..|.|..+..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 6789999999999999999999999999 88888776654 34699999999999999999 999999999999955432
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~ 213 (265)
-. ......+.+....+..... ......+.-.....|.|.+||.+.+|+||+++..+-|.+.. ..+.+|
T Consensus 83 gr------~s~~~~G~y~gggrgGgg~---gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCf-adv~rD-- 150 (241)
T KOG0105|consen 83 GR------SSSDRRGSYSGGGRGGGGG---GGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCF-ADVQRD-- 150 (241)
T ss_pred CC------cccccccccCCCCCCCCCC---CcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeee-eeeecc--
Confidence 11 0000001111111110000 00011122235678999999999999999999999996643 333332
Q ss_pred CCceeEEEEEECCHHHHHHHHHh-CCCee
Q 024584 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTI 241 (265)
Q Consensus 214 g~~~G~afV~F~s~~~A~~Al~~-~g~~l 241 (265)
|++.|+|...|+.+-|+.+ +.+.+
T Consensus 151 ----g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 ----GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ----cceeeeeeehhhHHHHHHhhccccc
Confidence 4899999999999999997 55544
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=145.20 Aligned_cols=195 Identities=18% Similarity=0.183 Sum_probs=143.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcC-CCcee-E-EEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAG-LDIVD-V-LLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~-~giv~-v-~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
...+..|||.|||+++.|+||+++|.. .|.|+ | ++.|..|+++|+|.|+|+++|.++||++ +|...+.||+|.|+.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 355667999999999999999999995 56555 5 5679999999999999999999999999 999999999999987
Q ss_pred cchhhhHHHHhhhcccCC-------------CCCCC-------CCCCCC-----CCC-------CC--------------
Q 024584 131 CKRQDYYNAVASEVNYEG-------------IYDND-------FHGSPP-----PSR-------AK-------------- 164 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-------------~~~~~-------~~~~~~-----~~~-------~~-------------- 164 (265)
....+-.+....-..... .+... .+.-+. .++ .+
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 665332111110000000 00000 000000 000 00
Q ss_pred --CC--CCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCC
Q 024584 165 --RY--NDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKM 239 (265)
Q Consensus 165 --~~--~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~ 239 (265)
-. ..-..++...++||.||.+.+....|++.|.-.|.+. .|.+-.|+.|.++|++.++|..+-+|..||.+ ++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~-~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ-SVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeee-eeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00 0001234556899999999999999999999988865 58888899999999999999999999999998 888
Q ss_pred eeCCeEEEEEe
Q 024584 240 TIGSRYVELFP 250 (265)
Q Consensus 240 ~l~gr~i~V~~ 250 (265)
-+.+++..+.+
T Consensus 280 g~~~~~~~~Rl 290 (608)
T KOG4212|consen 280 GLFDRRMTVRL 290 (608)
T ss_pred CCccccceeec
Confidence 88888887776
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=1.2e-17 Score=155.62 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|.+||+ +|+..|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3467999999999999999999999999 666755 454 68899999999999999999999 9999999999999776
Q ss_pred c
Q 024584 132 K 132 (265)
Q Consensus 132 ~ 132 (265)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 5
No 38
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.77 E-value=2.5e-18 Score=156.77 Aligned_cols=232 Identities=19% Similarity=0.115 Sum_probs=169.1
Q ss_pred cccccccCCCCceeecCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEE-ECC-CCCceeE
Q 024584 22 SKRQRMMEPNPYFAVSSSASGFQPYGYGGGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNK-NGRFSGE 99 (265)
Q Consensus 22 ~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~-~~~-~g~~kG~ 99 (265)
..|+-|+-++..-.+++-- -.++++....+-..++|++.+++++++.++.|+++||.+..+..+.| .+. .+...|-
T Consensus 277 ~~~~~mflqp~~~~v~p~~--~ns~sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~ 354 (944)
T KOG4307|consen 277 SWRDTMFLQPPRNDVKPNY--NNSYSGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGR 354 (944)
T ss_pred hhhchhhccCccCCCCccc--cCCCCCCCCCcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCc
Confidence 5677777764443444431 12233333334457899999999999999999999999988766433 343 4444789
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCC--CCCCCC---CCCCCCCCC
Q 024584 100 AFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPP--PSRAKR---YNDKDQMEH 174 (265)
Q Consensus 100 afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~ 174 (265)
++|+|....++++|++.|...+-.|+|++.+....+|.-+.....-.. +-.....+..+ ..+... .........
T Consensus 355 ~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~-~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~a 433 (944)
T KOG4307|consen 355 KTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVP-PPVIQNNHGRPIAPPRAMVRPGQNVPFPGGA 433 (944)
T ss_pred eEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCC-CCcccccCCCCCCCcccccCCCCCCCCCCCc
Confidence 999999999999999999999999999999888776643322111000 00001111111 111110 011123456
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
+.+|||..||..+++.++.++|....+|++.|.|.+-++++.++.|||.|..++++.+|+.- +..+++.|.|+|..++.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 78999999999999999999999988999889999989999999999999999999888775 99999999999999999
Q ss_pred HHH
Q 024584 254 DEA 256 (265)
Q Consensus 254 ~e~ 256 (265)
+.|
T Consensus 514 ~~m 516 (944)
T KOG4307|consen 514 YAM 516 (944)
T ss_pred HHH
Confidence 988
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=8e-18 Score=150.47 Aligned_cols=190 Identities=17% Similarity=0.161 Sum_probs=131.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCcee-EEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhhh
Q 024584 61 VRLRGLPFNCTDIDICKFFAGLDIVD-VLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQDY 136 (265)
Q Consensus 61 vfV~nLp~~~te~dL~~~F~~~giv~-v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~~ 136 (265)
|||+||.++++|++|+..|++||-++ |.+ +|. +|+++||+||+|.+.++|.+|++ +||.+|.||.|.|.......-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999555 533 464 99999999999999999999988 999999999999865442211
Q ss_pred HHHHhhhcc-----cCCCCCCC---------------CCCCCCCCC------------C--C---CCCCCCCC-------
Q 024584 137 YNAVASEVN-----YEGIYDND---------------FHGSPPPSR------------A--K---RYNDKDQM------- 172 (265)
Q Consensus 137 ~~~~~~~~~-----~~~~~~~~---------------~~~~~~~~~------------~--~---~~~~~~~~------- 172 (265)
....+.... ....++.. ....+..+. . . ......+.
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 000000000 00000000 000000000 0 0 00011111
Q ss_pred CCccEEEEcCCCCCCC----------HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee
Q 024584 173 EHTEILKMRGLPFSVK----------KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI 241 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t----------~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l 241 (265)
..+.|+.++|+-...| .+|+.+-+.+||.+ ++|..|++. -|+.||.|.+.+.|..|+.. ||.+|
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v---~hi~vd~ns--~g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKV---CHIFVDKNS--AGCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCe---eEEEEccCC--CceEEEecCcHHHHHHHHHHHhhhhh
Confidence 5667899999954433 37888999999977 466666544 39999999999999999998 99999
Q ss_pred CCeEEEEEeCCHHH
Q 024584 242 GSRYVELFPSTPDE 255 (265)
Q Consensus 242 ~gr~i~V~~~~~~e 255 (265)
.||.|++.+.....
T Consensus 516 ~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 516 AGRMITAKYLPLER 529 (549)
T ss_pred ccceeEEEEeehhh
Confidence 99999998776544
No 40
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.75 E-value=9.7e-17 Score=136.23 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=135.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee---------EEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCcc
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---------VLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM 121 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~---------v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l 121 (265)
+.+..++.|||.|||.++|.+++.++|+.||++- |.|+ +..|+.||-|.+.|-..++++.|++ +++..|
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455688899999999999999999999999542 5554 6689999999999999999999999 999999
Q ss_pred CCeeEEEeecchhhhHHHHhhhcccCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCccEEEEcCCCC----CCC----
Q 024584 122 GRRYVEVFRCKRQDYYNAVASEVNYEGIYDND-----FHGSPPPSRAKRYNDKDQMEHTEILKMRGLPF----SVK---- 188 (265)
Q Consensus 122 ~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~----~~t---- 188 (265)
.|+.|+|..+.-+--....... .......+. .+.....|+... .........++|.++||-. ..+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~-k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASK-KEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred cCcEEEEehhhhhhccCcCccc-ccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 9999999766421000000000 000000000 000000111111 1122234667999999942 233
Q ss_pred ---HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 189 ---KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 189 ---~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
.+||++-.+.||.+.. |.|.. ..+.|.+-|.|.+.++|..||+. +|..++||.|..+....
T Consensus 287 ~dlkedl~eec~K~G~v~~-vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRK-VVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHhCCcce-EEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 4677777999998874 54432 35678999999999999999998 99999999999887653
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.2e-18 Score=139.16 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=107.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
....+|||+||..++||+-|..||++.|.+ .+.+ .+ .|.|.++..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATA 50 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccC
Confidence 456799999999999999999999999955 4433 23 122322211
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP- 212 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~- 212 (265)
. .. ..++......-+||..|...++-++|++.|.+||.+.+ .+|++|.
T Consensus 51 p-------------------------~n-----Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~-akvirD~~ 99 (321)
T KOG0148|consen 51 P-------------------------GN-----QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSD-AKVIRDMN 99 (321)
T ss_pred c-------------------------cc-----CCCCccccceeEEehhcchhcchHHHHHHhcccccccc-ceEeeccc
Confidence 0 00 01122233567999999999999999999999998886 6777776
Q ss_pred CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
+++++|||||.|-+.++|+.||.. ||..|++|.|+-.++++|-
T Consensus 100 T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 100 TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 899999999999999999999998 9999999999999998764
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6.5e-18 Score=146.90 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
..+..|||.+||.+.-+.||...|.+||.|...-+++...++.++.|+||.|++.-+|..||.. ||..|+.+++.|.+.
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk 501 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLK 501 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEee
Confidence 3456799999999999999999999999877544555556999999999999999999999998 999999999999865
Q ss_pred C
Q 024584 252 T 252 (265)
Q Consensus 252 ~ 252 (265)
.
T Consensus 502 ~ 502 (510)
T KOG0144|consen 502 R 502 (510)
T ss_pred e
Confidence 4
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=2.8e-17 Score=128.04 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|++||.+.. +.|+.+. +++++|||||+|.+.++|++||+. |++.|+|+.|.|.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVD-AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE-EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678999999999999999999999998774 7777776 789999999999999999999997 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8754
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=5.1e-17 Score=149.02 Aligned_cols=194 Identities=16% Similarity=0.189 Sum_probs=133.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
....+..++|+|||..+..++|...|..||.+.-+++++.|. .|+|+|.++.+|.+|+. +....+..-++.+.++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc---eeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 346789999999999999999999999999554335565542 49999999999999999 88888888777775544
Q ss_pred hhhhHHHHhhhc---ccCCCC--C-CCCCCCCCCCC----CCC------CCCCCCCCCccEEEEcCCCCCCCHHHHHHhh
Q 024584 133 RQDYYNAVASEV---NYEGIY--D-NDFHGSPPPSR----AKR------YNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 196 (265)
Q Consensus 133 ~~~~~~~~~~~~---~~~~~~--~-~~~~~~~~~~~----~~~------~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F 196 (265)
..-+... .... ...... . +..+....... ..+ ...........+|||+||+|++|.++|..+|
T Consensus 458 ~dvf~~~-pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 458 EDVFTED-PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhccCC-ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 3322211 0000 000000 0 00000000000 000 0000111222349999999999999999999
Q ss_pred hcCCceeceEEEeeCCCCC----ceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 197 KDYKIIEDKIHIACRPDGK----ATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 197 ~~~g~~~~~v~i~~~~~g~----~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
...|.+. ++.|...++.. +.|||||+|.+.++|..|++. +|+.|.|+.|.|..+.
T Consensus 537 ~k~G~Vl-S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 537 SKQGTVL-SIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HhcCeEE-EEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999776 36666555443 559999999999999999998 9999999999999886
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=5.9e-17 Score=126.28 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...++|||+|||+++||++|+++|++|| |..+.+ .+ .+++++|||||+|.+.++|++||+ +|+..|+++.|.|..+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 5577999999999999999999999999 666644 45 489999999999999999999998 9999999999999776
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 54
No 46
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=9.4e-16 Score=123.84 Aligned_cols=190 Identities=16% Similarity=0.213 Sum_probs=133.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----hhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 56 PSFPVVRLRGLPFNCTDIDICK----FFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~----~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
.++.+|||.||+..+..++|+. +|++|| |++|.. -++.+.+|-|||.|.+.+.|..|+. ++|..+-|++++|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a-~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISA-FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEe-cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 3445999999999999999988 999999 777653 4677899999999999999999999 99999999999998
Q ss_pred ecchh-hhHHHHhhhcccCCCC---C--------CCCCCC----CCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 024584 130 RCKRQ-DYYNAVASEVNYEGIY---D--------NDFHGS----PPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIV 193 (265)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~---~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~ 193 (265)
++..+ +............... . ....+. .......+. ......+...||+.|||..++.+.|.
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHHH
Confidence 77643 2222211111000000 0 000000 000000011 12335677899999999999999999
Q ss_pred HhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC-CeEEEEEeCC
Q 024584 194 QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG-SRYVELFPST 252 (265)
Q Consensus 194 ~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~-gr~i~V~~~~ 252 (265)
.+|.+|.-... |+++.. -.+.|||+|.+...|..|... .+..|- ...+.|..++
T Consensus 165 ~lf~qf~g~ke-ir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKE-IRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccce-eEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999985553 666643 236899999999999999886 777665 6677776553
No 47
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=5.3e-17 Score=132.17 Aligned_cols=167 Identities=23% Similarity=0.305 Sum_probs=124.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhhh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQDY 136 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~~ 136 (265)
..|||++||+.+.+.||..||.++| +.++.+.+ ||+||+|.+..+|+.|+. +|+..|.+-.+.|..+....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~- 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR- 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeecccccc-
Confidence 4699999999999999999999999 66676654 799999999999999999 99999988776664333111
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCc
Q 024584 137 YNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKA 216 (265)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~ 216 (265)
... ..+... .+.. + ...........+.|+|.||+..+.+.+|.++|.++|.++. +.+ .
T Consensus 75 -----~~~--g~~~~g-~r~~---~---~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~-~~~-------~ 132 (216)
T KOG0106|consen 75 -----RGR--GRPRGG-DRRS---D---SRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTY-VDA-------R 132 (216)
T ss_pred -----ccc--CCCCCC-Cccc---h---hhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCch-hhh-------h
Confidence 110 000000 0000 0 0011222346678999999999999999999999997653 222 4
Q ss_pred eeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 217 TGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 217 ~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
.+++||+|.+.++|.+||.+ ++..|.++.|.+....+.
T Consensus 133 ~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 133 RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred ccccceeehhhhhhhhcchhccchhhcCceeeecccCcc
Confidence 56899999999999999998 999999999999655443
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=4.3e-16 Score=106.02 Aligned_cols=69 Identities=33% Similarity=0.549 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
|||+|||.++|+++|+++|+.||.+. .+.+..+..++.+|+|||+|.+.++|++|++. |+..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIE-SIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEE-EEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcc-cccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999886 47787778899999999999999999999996 99999999985
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=8.2e-16 Score=105.03 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
|+|+|||+++|+++|+++|+.+|.+. .|.+..+++++++|+|||+|.+.++|.+|++. ++..|+||.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~-~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVE-KVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEE-EEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcc-eEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999776 58898887899999999999999999999998 88999999885
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.7e-16 Score=104.50 Aligned_cols=67 Identities=24% Similarity=0.442 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCce-eEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 61 VRLRGLPFNCTDIDICKFFAGLDIV-DVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 61 vfV~nLp~~~te~dL~~~F~~~giv-~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
|||+|||.++|+++|+++|+++|.+ .+.+. +.+++++|+|||+|.+.++|++|++ +++..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999955 45544 4789999999999999999999999 999999999874
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=128.76 Aligned_cols=86 Identities=17% Similarity=0.367 Sum_probs=77.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 170 ~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
......++|+|.|+||..-+.||+.+|.+||.|.+ |.|+.++.| +||||||+|++.+||++|-++ ||+.+.||.|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld-VEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD-VEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceee-EEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 33456689999999999999999999999998875 999988777 899999999999999999988 999999999999
Q ss_pred EeCCHHHHH
Q 024584 249 FPSTPDEAR 257 (265)
Q Consensus 249 ~~~~~~e~~ 257 (265)
..++..-+.
T Consensus 169 n~ATarV~n 177 (376)
T KOG0125|consen 169 NNATARVHN 177 (376)
T ss_pred eccchhhcc
Confidence 999876443
No 52
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=132.53 Aligned_cols=75 Identities=40% Similarity=0.573 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
++|.|.|+|++++-+||.+||..|....++|.+.++++|.++|.|.|.|++.++|.+|... +++.|.+|.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999886 99999999998865
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=5.5e-15 Score=100.92 Aligned_cols=67 Identities=30% Similarity=0.453 Sum_probs=57.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 61 VRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 61 vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
|||+|||+++++++|+++|+.+| +..+.+ .+++|.++|+|||+|.++++|.+|++ .++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999 445654 45668999999999999999999999 777999999874
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=5.3e-15 Score=130.95 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+++|+++|+++|+.||.+.. |+|+.|. +++++|||||+|.++++|++||+. |+..|.+++|.|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~-v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINT-CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 346789999999999999999999999998774 7887775 899999999999999999999986 9999999999998
Q ss_pred eCCH
Q 024584 250 PSTP 253 (265)
Q Consensus 250 ~~~~ 253 (265)
++.+
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8765
No 55
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=7.8e-15 Score=122.58 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=68.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
.++|||+|||+.+|+++|++||+.||.+.+ |.|+.+. ..+|||||+|.++++|+.||.+||..|.||.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~-V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEY-VEMQSEN--ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEeecC--CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 468999999999999999999999998874 7887764 35799999999999999999889999999999999875
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.2e-15 Score=122.08 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
...++|||+||||.+..++|+++|++|| |++. +|.|+ +|+||||+||+|.+.++|.+|++--+-.|+||.-.+..+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 4578999999999999999999999999 8874 55565 8999999999999999999999987888999988775443
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=4e-15 Score=120.61 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
.-.+|||+||+|.+++++|+++|++||.+.+.|+|....+|+++|||||+|++.++|.+|++.-.-.|+||+.-+.+++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 45689999999999999999999999977766666655599999999999999999999999877899999988877654
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.55 E-value=6.9e-14 Score=112.48 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=112.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE--ECCC-CCceeEEEEEeCCHHHHHHHHH-hCCCccC---CeeEEE
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL--VNKN-GRFSGEAFVVFAGPIQVEFALQ-RDRQNMG---RRYVEV 128 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~--~~~~-g~~kG~afV~F~~~e~A~~Al~-~~~~~l~---~r~I~v 128 (265)
.-.+|||.+||.++.-.||..+|..|- -...++ .++. .-.+-+|||+|.+..+|..|+. +||..|+ +..+.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999885 333333 3343 3466899999999999999999 9999987 344555
Q ss_pred eecchhhhHHH-Hhhh--------------cccC-CC--------CCCC---CCCCCC--C---------------CCC-
Q 024584 129 FRCKRQDYYNA-VASE--------------VNYE-GI--------YDND---FHGSPP--P---------------SRA- 163 (265)
Q Consensus 129 ~~~~~~~~~~~-~~~~--------------~~~~-~~--------~~~~---~~~~~~--~---------------~~~- 163 (265)
..+....-... .... ..+. .. .++. ..+..+ + |.+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 33321111000 0000 0000 00 0000 000000 0 000
Q ss_pred ------CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-
Q 024584 164 ------KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK- 236 (265)
Q Consensus 164 ------~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~- 236 (265)
+............+|||.||..++|||+|+.+|+.|.-.. +.-+..+.|.+ .|||+|+..+.|..||..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~--~l~~~~~~g~~--vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRARGGMP--VAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCce--EEEEecCCCcc--eEeecHHHHHHHHHHHHHh
Confidence 0000011123446899999999999999999999986332 23334445544 899999999999999985
Q ss_pred CCCee
Q 024584 237 DKMTI 241 (265)
Q Consensus 237 ~g~~l 241 (265)
.|..|
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 66555
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=119.38 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
.++|||+|||+.+||++|++||+.|| |.++.|.. ++.++|||||+|.++++|+.||.+|+..|.||.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~-d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQS-ENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-cCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 57999999999999999999999999 66675542 2235799999999999999999999999999999997765
No 60
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.7e-14 Score=116.75 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
+...+|||+||++.+||+||++||+.|| |.+|.|... +..+|+|||+|.++++|+.||.++|..|.+++|.|.++.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4568999999999999999999999999 566765533 566789999999999999999999999999999997765
No 61
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.8e-14 Score=116.11 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=69.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
...+|+|+||++.+|++||++||+.||.+.+ |.|+.+ ++..|+|||+|.++++|+.||.+||..|.+++|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~-V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEH-VEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEE-EEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4579999999999999999999999998885 888876 566789999999999999999999999999999998854
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.9e-14 Score=116.10 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=74.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...+|.|.|||.+++++||+++|.+||.+.. |.|..|+ +|.++|||||.|.++++|.+||.. ||.-+.+=.|.|.++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r-vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITR-VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccce-eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 5678999999999999999999999997774 8888887 899999999999999999999998 999999999999999
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.8e-14 Score=106.17 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCcee-EEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-VLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv~-v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...++|||+||++.++|+.|.++|+.+|.+. |+| +|+ +..+-||+||+|.+.++|+.||+ +++..|..|+|.+.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 5689999999999999999999999999554 555 465 56788999999999999999999 9999999999999554
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=2.2e-13 Score=115.96 Aligned_cols=164 Identities=19% Similarity=0.259 Sum_probs=111.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCce-eEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~giv-~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
.++|||+|||+++|+++|+++|..+|.+ .+.+ .+ .+|+++|+|||+|.+.++|..|++ +++..|.++.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999944 5644 45 489999999999999999999999 999999999999977542
Q ss_pred --hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 134 --QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
....... . . ...... ................+++.|++..++..++..+|..++.+.. +.+...
T Consensus 195 ~~~~~~~~~------~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 260 (306)
T COG0724 195 ASQPRSELS------N--N----LDASFA-KKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVR-ASLPPS 260 (306)
T ss_pred ccccccccc------c--c----cchhhh-ccccccccccccccceeeccccccccchhHHHHhcccccccee-eeccCC
Confidence 0000000 0 0 000000 0000011222346678999999999999999999999996632 444333
Q ss_pred CCC-CceeEEEEEECCHHHHHHHHH
Q 024584 212 PDG-KATGEAYVEFVSVEEAKRAMC 235 (265)
Q Consensus 212 ~~g-~~~G~afV~F~s~~~A~~Al~ 235 (265)
..+ ......++.+.....+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 261 KDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred CCCcccccccccchhHHHhhhhhhc
Confidence 322 244444455555555555444
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=6.1e-14 Score=103.42 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
..+++|||+||++.+||++|.++|+.+|.+.. |.+=.|. +..+-||+||+|.+.++|+.||+. +++.|..|+|+|.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irr-iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRR-IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchhe-eEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 36689999999999999999999999998874 5554555 667899999999999999999998 99999999999977
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
--.
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 543
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.9e-14 Score=119.16 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
.......|+|.||||..-|.||+.+|.+|| |.+|.|+-...-||||+||+|++++||++|-+ +|+..+.||+|+|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345577999999999999999999999999 77885543333499999999999999999998 9999999999999887
Q ss_pred chh
Q 024584 132 KRQ 134 (265)
Q Consensus 132 ~~~ 134 (265)
+..
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 754
No 67
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.50 E-value=6.9e-13 Score=115.17 Aligned_cols=186 Identities=16% Similarity=0.164 Sum_probs=132.8
Q ss_pred CCeEEEcCC-CCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 58 FPVVRLRGL-PFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 58 ~~~vfV~nL-p~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
++.|-|.|| +..+|.+-|..+|.-|| +..|.|....+ --|.|++++...|+-|++ ++|..+.|++|+|..+...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 789999999 67889999999999999 66676654333 469999999999999999 9999999999999887755
Q ss_pred hhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCC--CCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC
Q 024584 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDK--DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212 (265)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~ 212 (265)
.+.-.. +......+..++...+...-.++.+.. .--++..+|++.|+|.+++||||+.+|.+-|.......+.
T Consensus 374 ~vqlp~--egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 374 NVQLPR--EGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred cccCCC--CCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 432111 111111122222222221111121111 1124567999999999999999999999988653322222
Q ss_pred CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe-EEEEEeCC
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR-YVELFPST 252 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr-~i~V~~~~ 252 (265)
++.+-+|.+.+.+.|+|..|+.. |.+.++.. .|+|..+.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 23444899999999999999887 99999876 89998764
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.1e-13 Score=112.67 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
.+.++|.|.|||.+++|+||+++|.+|| +..+.+ .|+ +|.++|||||.|.+.++|.+||. +||.-++.=.|.|.++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999999999999999999999 666644 565 89999999999999999999999 9999999888888666
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
.+
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 53
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.9e-13 Score=95.58 Aligned_cols=86 Identities=27% Similarity=0.486 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
++.+..|||+|||+++|.|+..++|..||.+.. |+|= .+..-+|.|||.|++..+|++|+.. +|..+.+|++.|.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQ-IRiG--~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQ-IRIG--NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEE-EEec--CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 356678999999999999999999999998763 5553 3455689999999999999999998 99999999999988
Q ss_pred CCHHHHHHHH
Q 024584 251 STPDEARRAE 260 (265)
Q Consensus 251 ~~~~e~~~~~ 260 (265)
-.+..+.+.+
T Consensus 92 yq~~~~~~~~ 101 (124)
T KOG0114|consen 92 YQPEDAFKLM 101 (124)
T ss_pred cCHHHHHHHH
Confidence 8776554433
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=3.2e-13 Score=91.31 Aligned_cols=70 Identities=30% Similarity=0.513 Sum_probs=63.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 177 ~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
+|+|+|||..+++++|+++|..||.+.. +.+..++ +.++|+|||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~-~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES-VKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE-EEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 4899999999999999999999997764 6777665 78899999999999999999997 999999999987
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=5.3e-12 Score=110.60 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=64.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++||+-|++-|..||.+.. +.|+ .+|+++| .|.|.++++|++|+.. |+..|.||.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~y-adim--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLY-ADIM--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceeh-hhhh--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34589999999999999999999999997764 5563 4688888 9999999999999998 99999999999976
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=7.2e-13 Score=94.24 Aligned_cols=83 Identities=24% Similarity=0.406 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
-+++.+..|||+|||+++|.++..++|..|| |..|++= .+...+|.|||.+++..+|.+|+. ++|..+.++++.|..
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG-~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG-NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEec-CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3567899999999999999999999999999 6677753 344567999999999999999999 999999999999977
Q ss_pred cchhhh
Q 024584 131 CKRQDY 136 (265)
Q Consensus 131 ~~~~~~ 136 (265)
....+.
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 665543
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=7.8e-13 Score=117.37 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCH--HHHHHHHHh-CCCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV--EEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~--~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....+|||+||++++|++||+.+|..||.|.. |.|+ ..+| +|||||+|.+. .++.+||.. ||..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkd-VEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDA-VEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 45678999999999999999999999998874 8888 4466 89999999987 789999997 9999999999999
Q ss_pred eCCHHHHHH
Q 024584 250 PSTPDEARR 258 (265)
Q Consensus 250 ~~~~~e~~~ 258 (265)
.+.+.=+.+
T Consensus 84 KAKP~YLeR 92 (759)
T PLN03213 84 KAKEHYLAR 92 (759)
T ss_pred eccHHHHHH
Confidence 998875443
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=7.7e-13 Score=89.40 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=61.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 60 VVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 60 ~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
+|+|+|||..+++++|+++|..+| +..+.+....+.++|+|||+|.+.++|++|++ +++..+.++.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999999999999 55565543337889999999999999999999 8989999999887
No 75
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.3e-12 Score=87.52 Aligned_cols=73 Identities=26% Similarity=0.428 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 177 ~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
+|+|+|||..+++++|+++|+.+|.+.. +.+..++.+.++|+|||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~-~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVES-VRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEE-EEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999997764 7788777778899999999999999999998 99999999999863
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.8e-13 Score=103.91 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=64.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
-++.|||+||+..+++.||...|..||.+.-+++.. ...|||||+|+++.||+.|+. |+|..|.|..|.|..++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 488999999999999999999999999655333322 456899999999999999999 999999999999977654
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.8e-12 Score=87.23 Aligned_cols=68 Identities=28% Similarity=0.494 Sum_probs=61.4
Q ss_pred EcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 180 MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 180 v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
|+|||..+++++|+++|+.||.+.. +.+..++ ++.++|+|||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~-~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIES-VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeE-EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999997764 6777666 588999999999999999999998 999999999987
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=6.1e-13 Score=105.91 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
+....|.|-||.+.+|.++|+.+|+.||-|-+ |.|+.|. ++.++|||||.|....||+.||+. +|..|.||.|.|+.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgD-VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGD-VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccc-eecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45568999999999999999999999998775 9999888 899999999999999999999998 99999999999976
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
+.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 64
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.1e-12 Score=116.35 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCH--HHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGP--IQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~--e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
...+|||+||+++++++||+.+|..|| +..+.|+..+| +|||||+|.+. .++.+||. +||..+.||.|+|..+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 467899999999999999999999999 55676666677 89999999988 78999999 99999999999998886
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.4e-12 Score=115.79 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=133.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eE-EEEC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DV-LLVN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v-~~~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+...+.+||++||...++++++++...+|.. .. ++.+ .+|.++||||.+|.++.....|++ +||..++++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4567789999999999999999999999944 44 3344 479999999999999999999999 999999999999966
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCC--CCCCC--------HHHHHHhhhcCC
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGL--PFSVK--------KSEIVQFFKDYK 200 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL--p~~~t--------~~dL~~~F~~~g 200 (265)
+-.......... + ........-...........+.+|++.|+ |.... -++++.-+..||
T Consensus 366 A~~g~~~~~~~~----~-------~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 366 AIVGASNANVNF----N-------ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred hhccchhccccC----C-------ccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 543221110000 0 00000000000001222345567777776 11111 256667788899
Q ss_pred ceeceEEEeeC-CC---CCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 201 IIEDKIHIACR-PD---GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 201 ~~~~~v~i~~~-~~---g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
.+. +|.+... .+ ....|-.||+|.+.+++++|++. +|..++||+|...+.....
T Consensus 435 ~v~-~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 435 AVR-SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred cee-EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 887 4777765 32 34588999999999999999998 9999999999998877654
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=9.7e-13 Score=104.77 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCee
Q 024584 50 GGFPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRY 125 (265)
Q Consensus 50 ~~~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~ 125 (265)
+.+|....-++|.|-||-+-++-++|+.+|+.|| +.+|.| .|. ++.++|||||.|....||+.||+ |+|..|+||.
T Consensus 5 ~~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 5 RPPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred CCCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 3366778889999999999999999999999999 778855 465 89999999999999999999999 9999999999
Q ss_pred EEEeecc
Q 024584 126 VEVFRCK 132 (265)
Q Consensus 126 I~v~~~~ 132 (265)
|.|..+.
T Consensus 85 lrVq~ar 91 (256)
T KOG4207|consen 85 LRVQMAR 91 (256)
T ss_pred eeehhhh
Confidence 9996554
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=9.4e-14 Score=108.39 Aligned_cols=76 Identities=25% Similarity=0.366 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
.+...|||+|||++.||.||..+|++|| ||+|.+ .|+ +|+|+||||+.|++..+.-.|+. +||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567899999999999999999999999 889855 464 99999999999999999999998 9999999999999544
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.1e-12 Score=105.36 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
.+-+||||.-|++.++|.+|+..|+.||.++. |+|+.+. +|+++|||||+|...-+...|.+. +|..|+||.|.|..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikr-irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKR-IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCccee-EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45679999999999999999999999998874 8999886 999999999999999999999998 99999999999976
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
...
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 543
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.2e-12 Score=99.39 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=66.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
..++|||+||+..+++.||...|..||.+. +|-|.. .+-|||||+|+++-||+.|+.. ||+.|.|..|+|.+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr-svWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLR-SVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcce-eEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 467899999999999999999999999776 365554 4567999999999999999997 9999999999999887
Q ss_pred HH
Q 024584 253 PD 254 (265)
Q Consensus 253 ~~ 254 (265)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 53
No 85
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.8e-13 Score=106.82 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....|||+|||+..||.||..+|++||.+.+ |.+++|+ +|+++||||+.|++.-+..-|+.. ||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vd-inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVD-INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEE-EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 4567999999999999999999999997775 7888877 999999999999999999999997 99999999999964
No 86
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=6.2e-11 Score=101.87 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
....|||..+.++.+|+||+..|+.|| |+.|.+. .+ .+.++||+||+|.+..+...|+. ||-..|+|.+++|-.+
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 478999999999999999999999999 8888664 45 46699999999999999999999 9999999999999665
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.8e-12 Score=115.46 Aligned_cols=187 Identities=12% Similarity=0.190 Sum_probs=134.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCc------e---eEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDI------V---DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~gi------v---~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~ 125 (265)
...+..++|+++|+.++++....||+..-. . ..++.......+.+|||+|.+.++|..|+.+++..+.|++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~ 251 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRP 251 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCC
Confidence 455788999999999999999999995310 0 1111112235567999999999999999999999999999
Q ss_pred EEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceece
Q 024584 126 VEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK 205 (265)
Q Consensus 126 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~ 205 (265)
+.+............-....+..... ..+ ...........|+|.|||...++++++++...||....
T Consensus 252 ~~~~r~~d~~~~p~~~~~~~~~~~~~-------~~~-----~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~- 318 (500)
T KOG0120|consen 252 LKIRRPHDYQPVPGITLSPSQLGKVG-------LLP-----ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA- 318 (500)
T ss_pred ceecccccccCCccchhhhccccccC-------Ccc-----cccCcccccchhhhccCcCccCHHHHHHHHHhcccchh-
Confidence 98865542211111000000000000 000 11123356678999999999999999999999996553
Q ss_pred EEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 206 IHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 206 v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
..++.+. +|.++||||.+|.+......|+.- ||+.++++.|.|..+-..
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 4566555 689999999999999999999997 999999999999877554
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=4.7e-12 Score=85.12 Aligned_cols=66 Identities=30% Similarity=0.463 Sum_probs=58.5
Q ss_pred EcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 63 LRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 63 V~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
|+|||..+++++|+++|+.+| +..+.+. ++ ++.++|+|||+|.+.++|.+|++ +++..++++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999 5566544 43 68999999999999999999998 8989999999877
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=6.4e-12 Score=106.89 Aligned_cols=77 Identities=23% Similarity=0.460 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
..+|||+|||+.+|+++|.++|..||.+. .|.+..+. +++++|+|||+|.+.++|..|+.. ++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~-~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK-RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCcee-EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999999999876 47888885 899999999999999999999998 9999999999999864
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.5e-11 Score=83.50 Aligned_cols=70 Identities=27% Similarity=0.408 Sum_probs=61.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 60 VVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 60 ~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
+|+|+|||..+++++|+++|..+| +..+.+. ++.+..+|+|||+|.+.++|..|++ +++..+.++.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999999 5556443 4555789999999999999999999 89988999999874
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7.1e-12 Score=104.96 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+-+||||.-|+++++|.+|+..|+.|| |..|.|+ | .+|+++|||||+|+++-+...|.+ .++..|+++.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36789999999999999999999999999 6667665 5 499999999999999999999999 999999999999844
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.31 E-value=8.1e-12 Score=108.60 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=121.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-h--CCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-R--DRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~--~~~~l~~r~I~v~~~ 131 (265)
.+...|.+||||++++|+||.+++.+|| ++.+++.. |++ -|||+|.+.++|-.-+. . ---.|.+++|.|..+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk--Gkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK--GKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeec--cch--hhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 5788999999999999999999999999 55554432 223 79999999998877443 1 122367888888665
Q ss_pred chhhhHHHHhhhcccCCC----CCCCCCCCCCCCC-CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceE
Q 024584 132 KRQDYYNAVASEVNYEGI----YDNDFHGSPPPSR-AKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v 206 (265)
...++.........+... +........+... .-.......+..-.+++|.|+-+.+|-|-|.++|+.||.|..-|
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 443332111100000000 0000000000000 00001222234556889999999999999999999999887544
Q ss_pred EEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee--CCeEEEEEeCCHH
Q 024584 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI--GSRYVELFPSTPD 254 (265)
Q Consensus 207 ~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l--~gr~i~V~~~~~~ 254 (265)
.+-+. ++ =-|.|+|.+.+.|..|-.. +|..| +.|.|++..+...
T Consensus 182 TF~Kn-n~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 182 TFTKN-NG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred EEecc-cc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 44322 22 2399999999999999665 88776 4588998877654
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=6.4e-12 Score=113.23 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
+.|||+|+|++++|++|.++|++.| |..+.++ |+ +|+++||||++|.+.++|++|++ +|+..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999 7777665 54 89999999999999999999999 9999999999999877654
Q ss_pred hh
Q 024584 135 DY 136 (265)
Q Consensus 135 ~~ 136 (265)
.-
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.30 E-value=6.8e-11 Score=101.85 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=119.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee-EEEECCCCCceeEEEEEeCCHHHHHHHHHh---CCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQR---DRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~~---~~~~l~~r~I~v~ 129 (265)
.+.+...|.|++|-..++|.||.+-.+.||.+- +..+..+ -.|.|+|++.+.|+.++.+ +...+.|..--+.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc----ceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 345677999999999999999999999999555 4444322 3799999999999999873 4444555544443
Q ss_pred ecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEe
Q 024584 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209 (265)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~ 209 (265)
.++.+.+.+ .. .+.........+.|-|--+.+|-|-|..+..+.|.|-. |.|.
T Consensus 103 yStsq~i~R------------------------~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR-IvIf 155 (494)
T KOG1456|consen 103 YSTSQCIER------------------------PG--DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLR-IVIF 155 (494)
T ss_pred cchhhhhcc------------------------CC--CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEE-EEEE
Confidence 333222110 00 01111123334556677789999999999999998764 5555
Q ss_pred eCCCCCceeEEEEEECCHHHHHHHHHh-CCCee--CCeEEEEEeCCHHHH
Q 024584 210 CRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI--GSRYVELFPSTPDEA 256 (265)
Q Consensus 210 ~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l--~gr~i~V~~~~~~e~ 256 (265)
+ ++| -.|.|+|++.+.|++|-.. ||..| +.++|.|.++.+.-+
T Consensus 156 k-kng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 156 K-KNG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred e-ccc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4 355 3599999999999999887 99877 678999999988643
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=4.7e-12 Score=99.02 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+||+..++++.|.++|-+.|.|.+ +++++|. +..+.|||||+|.++|+|+-|++- |...|-||+|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~-i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVN-LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceee-eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 35579999999999999999999999998874 8999888 778999999999999999999997 99999999999998
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
++
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.2e-12 Score=102.73 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||++|...+|+.-|...|-+||-+.+ |.++.|- +++++|||||+|.-.|||..||.. |..+|-||+|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~d-IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKD-IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhh-cccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45679999999999999999999999997775 8888776 789999999999999999999998 99999999999999
Q ss_pred CCHHHH
Q 024584 251 STPDEA 256 (265)
Q Consensus 251 ~~~~e~ 256 (265)
+.|.-.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 987644
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.27 E-value=1e-11 Score=111.97 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
..|||+|+|+++++++|.++|+..|.+. +++++.|. +|+++||||++|.+.++|.+|++. ||..++||+|+|.+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~-s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL-SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccc-eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999999999777 48888888 899999999999999999999998 99999999999987654
No 98
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.8e-11 Score=106.40 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCee-CCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTI-GSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l-~gr~i~V~ 249 (265)
...+-|||+.||-++.|++|.-+|+..|.+-+ ++|+.|+ +|.++|||||+|.+.++|+.|++. |+++| .|+.|.|-
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e-lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE-LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceee-EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 67889999999999999999999999997764 8999995 899999999999999999999998 98887 47777665
Q ss_pred eC
Q 024584 250 PS 251 (265)
Q Consensus 250 ~~ 251 (265)
.+
T Consensus 160 ~S 161 (506)
T KOG0117|consen 160 VS 161 (506)
T ss_pred Ee
Confidence 44
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=92.19 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+-..-.|||.++...+||+||.+.|..|| |..+.+ +| .+|-.||||+|+|++.++|++|+. +|+..|.+..|.|.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 45678999999999999999999999999 555654 44 599999999999999999999999 999999999999976
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
+-
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 64
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1e-11 Score=92.50 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...+.|||.|+...+|++||.+.|..||.+.+ +++-.|. +|-.+|||.|+|.+.++|.+|+.. ||..|-|..|.|.+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKN-ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKN-IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccc-eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 46789999999999999999999999998874 8887766 899999999999999999999998 99999999999976
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
+-
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 54
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5e-10 Score=100.38 Aligned_cols=177 Identities=20% Similarity=0.249 Sum_probs=116.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEE-C--CCC--Ccee---EEEEEeCCHHHHHHHHH-hCCCccCCee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-N--KNG--RFSG---EAFVVFAGPIQVEFALQ-RDRQNMGRRY 125 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~-~--~~g--~~kG---~afV~F~~~e~A~~Al~-~~~~~l~~r~ 125 (265)
+.-.+.|||++||++++|+.|...|..||-+.|-.- . ..+ -.+| |+|+.|+++..+..-|. +.- .-+.-+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 455789999999999999999999999995543211 1 111 2456 99999999999888776 322 122223
Q ss_pred EEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCC----CCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhh-cCC
Q 024584 126 VEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK----RYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFK-DYK 200 (265)
Q Consensus 126 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~-~~g 200 (265)
+.|....-++.. ++ . .+|... ........++.+||||++||--+|-++|..+|. -||
T Consensus 335 f~vss~~~k~k~------VQ-I-----------rPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG 396 (520)
T KOG0129|consen 335 FKVSSPTIKDKE------VQ-I-----------RPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG 396 (520)
T ss_pred EEEecCcccccc------ee-E-----------EeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcC
Confidence 333211111100 00 0 000000 000112345778999999999999999999999 599
Q ss_pred ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCee----CCeEEEEEeC
Q 024584 201 IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTI----GSRYVELFPS 251 (265)
Q Consensus 201 ~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l----~gr~i~V~~~ 251 (265)
.|.. |-|-.|+ -+-++|-|=|+|.+..+..+||..-=..| -.++|+|.+-
T Consensus 397 gV~y-aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 397 GVLY-VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred ceEE-EEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 8874 7887774 67899999999999999999998632222 2456777654
No 102
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=9e-13 Score=123.59 Aligned_cols=145 Identities=19% Similarity=0.295 Sum_probs=121.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCceeE-EE-EC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LL-VN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~giv~v-~~-~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
..+++||+||+..+.++||...|..++++++ .+ .. .+++.+|+|||+|..++++.+|+.++...+.++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK--------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK--------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh---------
Confidence 3568999999999999999999999986653 22 23 468899999999999999999999533333321
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~ 213 (265)
..|+|+|+|+..|+++|+.+|+.+|.+.. +.++....
T Consensus 737 ------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~-~~~vt~r~ 773 (881)
T KOG0128|consen 737 ------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTS-LRLVTVRA 773 (881)
T ss_pred ------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccc-cchhhhhc
Confidence 14889999999999999999999998875 66777789
Q ss_pred CCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 214 g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
|+++|-|+|.|.+..+|.++... +...+.-+.+.|..+.+
T Consensus 774 gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 774 GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999999988 88888888888877665
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=1e-10 Score=79.84 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=50.5
Q ss_pred HHHHHHhhh----cCCceeceEE-EeeCC-C--CCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 189 KSEIVQFFK----DYKIIEDKIH-IACRP-D--GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 189 ~~dL~~~F~----~~g~~~~~v~-i~~~~-~--g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
+++|+++|+ .||.+.. |. ++.++ + +.++|+|||+|.+.++|.+|+.. ||..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~-v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGK-INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeE-EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 9997764 43 44443 4 88999999999999999999997 999999999986
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.19 E-value=2.8e-09 Score=92.02 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=124.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhcCCCce-eEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPF-NCTDIDICKFFAGLDIV-DVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~-~~te~dL~~~F~~~giv-~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.+.+.|-+|.. .++-+-|.++|-.||-| .|.++ .+. |.|.|++.+..+.++|+. +|+..+-|.+|.|..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 46789999999976 56677799999999944 56554 333 699999999999999999 999999999999987
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCC-C--CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEE
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAK-R--YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~ 207 (265)
+...-+.....-......+.-..+.+ +.+.+.. + .+...-..++++|+.-|.|..+||+.|.++|...+....+|+
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~-SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSG-SKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred ccccccccCCceecCCCCcchhhccc-ccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 76543322100000000000000110 0011100 0 001111246789999999999999999999999886665677
Q ss_pred EeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC
Q 024584 208 IACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243 (265)
Q Consensus 208 i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g 243 (265)
+..-++-+ .--+.++|++.++|..||.+ |-..|.+
T Consensus 439 vFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 439 VFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eecccccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 76554333 34589999999999999998 8777754
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=9.7e-11 Score=79.92 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=49.9
Q ss_pred CHHHHHHhhc----CCC-ceeEE--EECC-C--CCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 71 TDIDICKFFA----GLD-IVDVL--LVNK-N--GRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 71 te~dL~~~F~----~~g-iv~v~--~~~~-~--g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
.+++|+++|+ .|| +..+. ++++ + ++++|+|||+|.+.++|.+|++ +|+..+.||.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3689999999 999 55563 4543 5 8999999999999999999999 9999999999876
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.17 E-value=1.3e-10 Score=75.58 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=46.7
Q ss_pred HHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 192 IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 192 L~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
|.++|++||.+.. |.+..+. +++|||+|.+.++|.+|++. |+..++|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~-i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKK-IKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEE-EEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEE-EEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6899999998764 6665432 58999999999999999997 999999999999875
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.16 E-value=2.8e-11 Score=99.31 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=128.3
Q ss_pred CCCCeEEEcCCCCCCCHHH-H--HHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 56 PSFPVVRLRGLPFNCTDID-I--CKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~d-L--~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
+.-...++.++-.++..+- | ...|+.+- .+...+ .+..+.-.+++|+.|.....-.++-. .+++.++.++|++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 4456677888877776665 3 56777665 444433 34567788999999998888888877 78888888876663
Q ss_pred ecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEe
Q 024584 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209 (265)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~ 209 (265)
..+ .|... +-..-.....+||++.|--.++++-|...|..|-..-. ..++
T Consensus 174 ~gt--swedP---------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~-akvi 223 (290)
T KOG0226|consen 174 AGT--SWEDP---------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQK-AKVI 223 (290)
T ss_pred ccc--ccCCc---------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhh-cccc
Confidence 332 11000 00112246679999999999999999999999873332 4555
Q ss_pred eCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHH
Q 024584 210 CRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEAR 257 (265)
Q Consensus 210 ~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~ 257 (265)
+++ +|+++||+||.|.+.+++..||.. ||++++.|+|.+..+.-++.+
T Consensus 224 RdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wkeRn 273 (290)
T KOG0226|consen 224 RDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKERN 273 (290)
T ss_pred ccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHhhh
Confidence 565 899999999999999999999998 999999999999988877643
No 108
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.2e-11 Score=98.01 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
....+|||++|..++||.-|...|-+|| |++|.+ +| .+++.+|||||+|.-.|||..||. ||..+|-||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 5578999999999999999999999999 888744 55 589999999999999999999999 9999999999999776
Q ss_pred chh
Q 024584 132 KRQ 134 (265)
Q Consensus 132 ~~~ 134 (265)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 543
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1e-11 Score=99.82 Aligned_cols=134 Identities=14% Similarity=0.175 Sum_probs=110.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
+.++.+.+|||.||...++|+-|.++|-+.| ++.|.|- +++++.| ||||.|.++-.+..|++ +||..+.++.|.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~- 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR- 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc-
Confidence 3457789999999999999999999999999 5566654 4678787 99999999999999999 8999999888777
Q ss_pred ecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcC----CCCCCCHHHHHHhhhcCCceece
Q 024584 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRG----LPFSVKKSEIVQFFKDYKIIEDK 205 (265)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----Lp~~~t~~dL~~~F~~~g~~~~~ 205 (265)
+++++| |...+|++.+...|+.-+.++.
T Consensus 82 -----------------------------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~- 113 (267)
T KOG4454|consen 82 -----------------------------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEG- 113 (267)
T ss_pred -----------------------------------------------ccccCCCcchhhhhcchhhheeeecccCCCCC-
Confidence 233444 5667888999999999887664
Q ss_pred EEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 206 IHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 206 v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
+++..+.+|+++-++||.+.-.-+.-.|+..
T Consensus 114 ~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 114 VRIPTDNDGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred ccccccccCCccCccchhhhhhhcCcHHhhh
Confidence 7888888899999999998776666666665
No 110
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.1e-10 Score=91.57 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=64.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
..++|||.|||.++-+.||.++|-+||.+.+ |.+... . .+-.||||+|+++-+|+.||.- +|..++|+.|+|....
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~-ieLK~r-~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIRE-IELKNR-P-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEE-EEeccC-C-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5678999999999999999999999996653 554322 2 3457999999999999999997 9999999999997653
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=4.2e-10 Score=73.17 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=46.3
Q ss_pred HHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 75 ICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 75 L~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
|+++|++|| |..+.+.... +++|||+|.+.++|++|++ +|+..+.|++|.|..+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999 5556665444 5899999999999999999 9999999999999653
No 112
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.08 E-value=1.4e-10 Score=99.97 Aligned_cols=171 Identities=21% Similarity=0.211 Sum_probs=127.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-E-CCCCCceeEEEEEeCCHHHHHHHHHhCCC-ccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-V-NKNGRFSGEAFVVFAGPIQVEFALQRDRQ-NMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~-~~~g~~kG~afV~F~~~e~A~~Al~~~~~-~l~~r~I~v~~~~ 132 (265)
..+++|++++.+++.+.++..++...| .++..+ . .....++|+++|.|+..+++..||++.+. .+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 588999999999999999999999888 555433 2 34678999999999999999999997665 4555544432221
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEE-EcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILK-MRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
.... +..............+++ |.||++++++++|+.+|..+|.+. +|++..+
T Consensus 167 ~~~~-------------------------~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~-~~r~~~~ 220 (285)
T KOG4210|consen 167 RRGL-------------------------RPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT-SVRLPTD 220 (285)
T ss_pred cccc-------------------------cccchhcccccCccccceeecccccccchHHHhhhccCcCcce-eeccCCC
Confidence 1100 000000011112334555 999999999999999999999776 4777766
Q ss_pred C-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 212 P-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 212 ~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
+ .+.++|+|+|.|.+...+..|+......+.++++.+....+
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 6 78999999999999999999988767788999988876554
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=8.4e-10 Score=88.24 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=70.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCC-Ccee-EEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGL-DIVD-VLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~-giv~-v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
+.......++|..+|+-+.+.+|..+|.++ |.+. +++ .+ ++|.|+|||||+|.+++.|+-|.+ ||++.|+++.+.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344567789999999999999999999998 4555 455 34 599999999999999999999999 999999999999
Q ss_pred Eeecchh
Q 024584 128 VFRCKRQ 134 (265)
Q Consensus 128 v~~~~~~ 134 (265)
|....+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 8665544
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=1.7e-09 Score=86.52 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=73.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
......++|..+|.-..+.+|..+|.+|+-+...+++.++. +|.++|||||+|.+.+.|+-|-+. |++.|.++.|.|+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 34556899999999999999999999996333346665555 999999999999999999999997 9999999999999
Q ss_pred eCCHHHHH
Q 024584 250 PSTPDEAR 257 (265)
Q Consensus 250 ~~~~~e~~ 257 (265)
...++.+.
T Consensus 126 vmppe~~v 133 (214)
T KOG4208|consen 126 VMPPEQKV 133 (214)
T ss_pred EeCchhhh
Confidence 99988443
No 115
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=6.3e-10 Score=92.11 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLVNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
..++.|.|||-.||.+..+.||...|-+|| |+.. +++|+ +..+|.|+||.|.++.+|+.||+ |||..|+-+.++|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 346899999999999999999999999999 7763 55665 89999999999999999999999 99999998888884
Q ss_pred ec
Q 024584 130 RC 131 (265)
Q Consensus 130 ~~ 131 (265)
..
T Consensus 361 LK 362 (371)
T KOG0146|consen 361 LK 362 (371)
T ss_pred hc
Confidence 43
No 116
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=1.2e-09 Score=91.47 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=64.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
.+|||+|||..+++.+|+.+|++||.|.+ +.|+++ ||||..++...|+.||.. |+.+|+|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlE-CDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLE-CDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEe-eeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999997775 677754 999999999999999996 999999999999988765
No 117
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.93 E-value=3.3e-09 Score=88.56 Aligned_cols=82 Identities=17% Similarity=0.399 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
...+|+|.|||+.++++||+++|..|+.+. .+.+.+++.|++.|.|-|.|...+||.+|++. |+..|+|+.+.+..+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~-r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELK-RVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccce-EEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 446899999999999999999999998444 47888899999999999999999999999998 9999999999998776
Q ss_pred HHHH
Q 024584 253 PDEA 256 (265)
Q Consensus 253 ~~e~ 256 (265)
.--+
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5443
No 118
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.90 E-value=4.3e-09 Score=85.47 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCCCHHHHHH----hhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQ----FFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~----~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
+..+|||.||+..+..++|+. +|++||.+. .|+..++.+.+|-|||.|.+.+.|-.|+.. +|..+-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il---dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL---DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeE---EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 334999999999999999998 999999664 344456889999999999999999999998 999999999999
Q ss_pred EeCCHH
Q 024584 249 FPSTPD 254 (265)
Q Consensus 249 ~~~~~~ 254 (265)
.++..+
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 988654
No 119
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=6.6e-10 Score=96.29 Aligned_cols=83 Identities=18% Similarity=0.376 Sum_probs=73.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
..++|||.+|+|.+|++.|++.|.+||.+.+++ ++.|+ +++++||+||+|++.+...++|...-++|.||.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~-vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV-VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE-EeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 567899999999999999999999999888754 55555 8999999999999999999999987789999999999888
Q ss_pred HHHHH
Q 024584 253 PDEAR 257 (265)
Q Consensus 253 ~~e~~ 257 (265)
+.+..
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 77644
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=6.8e-09 Score=88.94 Aligned_cols=78 Identities=27% Similarity=0.340 Sum_probs=67.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh--CCCeeCCeEEE
Q 024584 170 DQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK--DKMTIGSRYVE 247 (265)
Q Consensus 170 ~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~--~g~~l~gr~i~ 247 (265)
+.+..-.+|||+||-..+++.||+++|-+||.++. |.+.. .+++|||+|.+.++|+.|.++ |...|+|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirs-i~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRS-IRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeee-EEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 33455679999999999999999999999998874 66653 245999999999999999886 88899999999
Q ss_pred EEeCCH
Q 024584 248 LFPSTP 253 (265)
Q Consensus 248 V~~~~~ 253 (265)
|.+..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 121
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.6e-08 Score=84.52 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
.....|+|.|||+.++++||+++|..++.+ .+.+ +++.|++.|.|-|.|...+||..|++ +|+..++|++|.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 344789999999999999999999999733 3433 58899999999999999999999999 99999999999886655
Q ss_pred hh
Q 024584 133 RQ 134 (265)
Q Consensus 133 ~~ 134 (265)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.79 E-value=1.1e-08 Score=95.74 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=64.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
.+||||++||.+++|.||.++|+.|| |..|.+.. ++|||||++.+..+|.+||+ |++..+.++.|+|.++...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 67999999999999999999999999 44565543 56899999999999999999 9999999999999887654
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=3.2e-08 Score=84.87 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee-EEEECCCCCceeEEEEEeCCHHHHHHHHH--hCCCccCCeeEEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQ--RDRQNMGRRYVEV 128 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~--~~~~~l~~r~I~v 128 (265)
+|....-.+|||++|-..++|.||+++|.+||.++ +.+... +++|||+|.+.++|++|.+ .|...|.|+.|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45556778999999988999999999999999554 555543 3599999999999999997 7888899999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
.+...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 87665
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.72 E-value=2e-08 Score=93.95 Aligned_cols=80 Identities=16% Similarity=0.390 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...+||+|++|+.++++.||.++|+.||.+.. |.++ .++|+|||++..+.+|++||.+ +...+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqS-i~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQS-IILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhccccee-Eeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45689999999999999999999999998763 5554 4678999999999999999998 999999999999998
Q ss_pred CHHHHHH
Q 024584 252 TPDEARR 258 (265)
Q Consensus 252 ~~~e~~~ 258 (265)
..+-++.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 7665443
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.71 E-value=3.5e-08 Score=88.79 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=62.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEee-CCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC-RPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~-~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
...|||+|||.++|.++|+++|..||.+.. ..|.. ...++..+||||+|.+.+++..||+.+-..|+++.|.|..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~-~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKE-GGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccc-cceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 346999999999999999999999995553 33433 2344444999999999999999999999999999999964
No 126
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.70 E-value=4.5e-08 Score=88.11 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE--EEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV--LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v--~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
....+|||+|||+++++++|.++|..|| |.+. .+....++...||||+|.+.++++.||+.+...++++.+.|...
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 4455699999999999999999999999 5553 33344566559999999999999999998888899999999543
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.69 E-value=6e-08 Score=83.19 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceece-------EEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK-------IHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR 244 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~-------v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr 244 (265)
..+..|||.|||.++|.+++.++|+.||++... |.|..+..|..+|-|.+.|--.++.+-|++. ++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345679999999999999999999999955433 7788888999999999999999999999997 99999999
Q ss_pred EEEEEeCC
Q 024584 245 YVELFPST 252 (265)
Q Consensus 245 ~i~V~~~~ 252 (265)
.|+|..+.
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99998764
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.4e-08 Score=82.55 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
..++.++|||=-|.+-+|++||.-+|+.||.+.. +.++.|. +|.+-.||||+|.+.+++++|.=+ ++..|.+|.|.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~s-ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVS-CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhccccee-eeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 3457789999999999999999999999998775 5555554 899999999999999999999877 999999999999
Q ss_pred EeCC
Q 024584 249 FPST 252 (265)
Q Consensus 249 ~~~~ 252 (265)
..+-
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 7653
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.6e-08 Score=82.81 Aligned_cols=78 Identities=24% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEEC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLVN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
.+|...|||-.|.+-+|++||.-+|+.|| |+.+ +|.| ++|-+--||||+|.+.+++++|.= |++..|..|.|.|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 36688999999999999999999999999 6666 4455 589999999999999999999986 999999999999955
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 43
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.59 E-value=4.6e-08 Score=80.64 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCc-ee-EEEEC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDI-VD-VLLVN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~gi-v~-v~~~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+.++..||.+.|..+++++-|...|+.|-- -. -++.+ ++|+++||+||.|.++.++..|+. ||+..++.|+|.+..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 567999999999999999999999998852 22 23444 599999999999999999999999 999999999999866
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5433
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.58 E-value=1.7e-07 Score=85.19 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=68.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
.....|.|.+|...+--.||+.+|++||.|.- ..++.+. +--.+.|+||++.+.++|.+||.. |.+.|.||.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvG-AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVG-AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceec-eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 45578999999999999999999999997764 4555544 334678999999999999999997 99999999999987
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
+.-
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 753
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.4e-07 Score=79.00 Aligned_cols=78 Identities=26% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
..+...|||+|+-+.+|-+++...|+.|| +..+ +..+. .|+++|||||+|.+.+.++.|+++|+..|.++.|.|...
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 35678999999999999999999999999 4434 33454 678999999999999999999999999999999999654
Q ss_pred c
Q 024584 132 K 132 (265)
Q Consensus 132 ~ 132 (265)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 3
No 133
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.5e-07 Score=78.71 Aligned_cols=78 Identities=23% Similarity=0.255 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
.....++|+|+.+.+|.++|..+|+.||.+. .|.++.+. .+.++|||||+|.+.+.++.|+..|+..|.++.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~-~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGIN-RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCcc-ceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4567899999999999999999999999765 36787777 568999999999999999999999999999999998754
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.50 E-value=2.1e-07 Score=84.56 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
.-...|||.+|+..+--.||+.+|+.|| +|...++ + .+--.+.|+||++.+.++|.++|. +|.+.|.||.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3467899999999999999999999999 6665443 3 344467899999999999999999 9999999999999877
Q ss_pred chh
Q 024584 132 KRQ 134 (265)
Q Consensus 132 ~~~ 134 (265)
...
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 643
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=1.8e-06 Score=62.12 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=57.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC--CceeE--EEEC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccC----CeeEEE
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGL--DIVDV--LLVN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG----RRYVEV 128 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~--giv~v--~~~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~----~r~I~v 128 (265)
+||.|+|||...|.++|.+++... |-.+. +.+| .++.+.|||||.|.+++.|.+-.+ ++|..+. .+..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998854 23342 3345 588899999999999999999988 8888865 344455
Q ss_pred eecc
Q 024584 129 FRCK 132 (265)
Q Consensus 129 ~~~~ 132 (265)
..+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 4443
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=9.8e-08 Score=77.14 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
+...+|||.||-..+||+-|.++|-+-|.|.. |.|..+.+++.+ ||||.|.++....-|+++ ||..|.++.|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~k-v~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYK-VGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEE-EeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 45679999999999999999999999998764 888888888888 999999999999999998 999999999988764
Q ss_pred C
Q 024584 252 T 252 (265)
Q Consensus 252 ~ 252 (265)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.9e-07 Score=88.92 Aligned_cols=155 Identities=19% Similarity=0.111 Sum_probs=119.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eEEEECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLVNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v~~~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...+.+||++||+..+++.+|+..|..+|.+ +|-|..+ -+.-.-||||.|.+...+-.|.. +.+..|+.-.+.+...
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4458899999999999999999999999955 4665433 45556699999999998888876 7666665544333211
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
. ........+++++|+.-+....|...|..||.+.. |. -
T Consensus 449 ~-------------------------------------~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~-Id---y 487 (975)
T KOG0112|consen 449 Q-------------------------------------PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI-ID---Y 487 (975)
T ss_pred c-------------------------------------cccccceeeccCCCCCCChHHHHHHHhhccCccee-ee---c
Confidence 1 02235678999999999999999999999997652 32 3
Q ss_pred CCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEeCC
Q 024584 212 PDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELFPST 252 (265)
Q Consensus 212 ~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~~~~ 252 (265)
..|.+ ||+|.|.+...|..|+.. .|.-|++ +.|.|.++.
T Consensus 488 ~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 488 RHGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccCCc--ceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 34555 999999999999999997 8888885 678887665
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.38 E-value=5.4e-06 Score=59.71 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCC-ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeC----CeEEEE
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYK-IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIG----SRYVEL 248 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g-~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~----gr~i~V 248 (265)
++|.|+|+|...|.++|.+++...- -.-+-+-++.|. ++-+.|||||-|.+++.|.+-.+. +|+.+. .+..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5899999999999999999987632 222335566565 678899999999999999999887 888775 567788
Q ss_pred EeCCHHH
Q 024584 249 FPSTPDE 255 (265)
Q Consensus 249 ~~~~~~e 255 (265)
.++.-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8877654
No 139
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.32 E-value=3.4e-06 Score=68.60 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=62.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-C-CCceeEEEEEECCHHHHHHHHHh-CCCeeC---CeEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-D-GKATGEAYVEFVSVEEAKRAMCK-DKMTIG---SRYV 246 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~-g~~~G~afV~F~s~~~A~~Al~~-~g~~l~---gr~i 246 (265)
...++|||.+||.++...+|..+|..|---+. ..+.... . ...+-+|||+|.+..+|..|+.. ||..|+ +.+|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEg-slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEG-SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccc-eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34689999999999999999999999764443 3343322 2 23567999999999999999998 999996 6777
Q ss_pred EEEeCCH
Q 024584 247 ELFPSTP 253 (265)
Q Consensus 247 ~V~~~~~ 253 (265)
+|.+++.
T Consensus 111 hiElAKS 117 (284)
T KOG1457|consen 111 HIELAKS 117 (284)
T ss_pred Eeeehhc
Confidence 7776643
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.27 E-value=8.7e-07 Score=77.29 Aligned_cols=179 Identities=16% Similarity=0.091 Sum_probs=118.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEEC---C--CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 60 VVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVN---K--NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 60 ~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~---~--~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
.|.|.||.+++|.++++.+|.-+| |.++.|+. . -....-.|||.|.+...+..|..|.++.+-++.|.|.+...
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 899999999999999999999999 77776653 1 13345689999999999999999989998899888866543
Q ss_pred hhh--HHH---Hhh--hcccCCCCCCCCCCCCC----CCCC-----CCC-----CCCCCCCCccEEEEcCCCCCCCHHHH
Q 024584 134 QDY--YNA---VAS--EVNYEGIYDNDFHGSPP----PSRA-----KRY-----NDKDQMEHTEILKMRGLPFSVKKSEI 192 (265)
Q Consensus 134 ~~~--~~~---~~~--~~~~~~~~~~~~~~~~~----~~~~-----~~~-----~~~~~~~~~~~l~v~nLp~~~t~~dL 192 (265)
... ..+ .+. .+....+.+.......+ +... .|. .......-..+|+|.+|+..+...++
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 211 111 111 11111111100000000 0000 000 00111122368999999999999999
Q ss_pred HHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeC
Q 024584 193 VQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG 242 (265)
Q Consensus 193 ~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~ 242 (265)
.+.|..+|.+.. .++. .+...-++-|+|....+...|+..+|..+.
T Consensus 169 ~e~f~r~Gev~y-a~~a---sk~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 169 GESFERKGEVSY-AHTA---SKSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcchhhh-hhhh---ccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 999999996653 3333 344445677999999999999998887665
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.22 E-value=2.3e-07 Score=81.57 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=119.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCce---eEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCc-cCCeeEEEeecch
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLDIV---DVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQN-MGRRYVEVFRCKR 133 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~giv---~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~-l~~r~I~v~~~~~ 133 (265)
..+|++||.+.++-.||..+|....+. ..++. .|||||...+..-|.+|++ ++++. +.|+.++|..+-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 368999999999999999999976432 23332 3799999999999999999 77665 8899888854432
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD 213 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~ 213 (265)
+. ...+.+-|+|+|...-|+-|-.+...||.++.+-.+..++.
T Consensus 76 kk-------------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e 118 (584)
T KOG2193|consen 76 KK-------------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE 118 (584)
T ss_pred HH-------------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH
Confidence 21 12345889999999999999999999998886544444432
Q ss_pred CCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHH
Q 024584 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEAR 257 (265)
Q Consensus 214 g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~ 257 (265)
+-..-|+|.+.+.+..||.+ ++..|....+.|.+..-++..
T Consensus 119 ---tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 119 ---TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhh
Confidence 22345789999999999998 999999999999888766543
No 142
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=5.5e-06 Score=71.82 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee---------EEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCcc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD---------VLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM 121 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~---------v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l 121 (265)
.....-+|||-+||..+++++|.++|.+|+++. |.+. + .+++.||.|.|.|.++..|+.|+. +++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 356688999999999999999999999999763 3332 3 489999999999999999999999 999999
Q ss_pred CCeeEEEeecchh
Q 024584 122 GRRYVEVFRCKRQ 134 (265)
Q Consensus 122 ~~r~I~v~~~~~~ 134 (265)
.+..|+|..+...
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 9999999776544
No 143
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.20 E-value=6e-06 Score=60.70 Aligned_cols=77 Identities=27% Similarity=0.414 Sum_probs=46.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh---C---CCeeCCeEEEEE
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK---D---KMTIGSRYVELF 249 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~---~---g~~l~gr~i~V~ 249 (265)
..|+|.|++..++.++|+++|+.||.|.. |.+. .|.. .|+|.|.++++|+.|+.+ . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~y-VD~~---~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAY-VDFS---RGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEE-EE-----TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcce-EEec---CCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47899999999999999999999995543 4443 3433 699999999999999884 4 567888889998
Q ss_pred eCCHHHHHH
Q 024584 250 PSTPDEARR 258 (265)
Q Consensus 250 ~~~~~e~~~ 258 (265)
..+.+|-..
T Consensus 76 vLeGeeE~~ 84 (105)
T PF08777_consen 76 VLEGEEEEE 84 (105)
T ss_dssp ---HHHHHH
T ss_pred ECCCHHHHH
Confidence 888765443
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.12 E-value=1.7e-05 Score=54.82 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCCHHHHH----HhhcCCC--ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 59 PVVRLRGLPFNCTDIDIC----KFFAGLD--IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~----~~F~~~g--iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
..|+|.|||.+.+-..|+ .++.-|| ++.|. .+.|+|.|.+.+.|++|++ |+|..+-|+.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 469999999999987754 5555777 33331 2689999999999999999 9999999999999665
Q ss_pred c
Q 024584 132 K 132 (265)
Q Consensus 132 ~ 132 (265)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.09 E-value=2.2e-05 Score=54.29 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=46.2
Q ss_pred cEEEEcCCCCCCCH----HHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 176 EILKMRGLPFSVKK----SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 176 ~~l~v~nLp~~~t~----~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
..|+|.|||.+.+. .-|++++..+|-.. +.|. .+.|+|.|.+.+.|.+|++. +|...-|+.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV--l~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV--LSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E--EE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE--EEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 36999999999885 56778888999442 2332 25799999999999999998 99999999999987
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 64
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=3.2e-06 Score=76.94 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
..+..+|+|-|||.++++++|+.+|+.|| |.+|.. +-...|..||+|.+..+|+.|++ +++..|.++.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~---t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE---TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc---ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34678999999999999999999999999 555432 33456899999999999999999 999999888776
No 147
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.03 E-value=5e-06 Score=72.06 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceec-------eEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeC
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED-------KIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIG 242 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~-------~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~ 242 (265)
.....+|||-+||.++++++|.++|.+++++.. .|.|..+. +++++|.|.|.|.+...|+.|+.- +++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345678999999999999999999999985432 14455555 789999999999999999999997 999999
Q ss_pred CeEEEEEeCCHH
Q 024584 243 SRYVELFPSTPD 254 (265)
Q Consensus 243 gr~i~V~~~~~~ 254 (265)
+.+|.|+++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999887654
No 148
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=4.9e-06 Score=68.27 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
++...++.+.|.+|+..+.+.+|.++|..+|.+..... ..+++||+|++.++|.+|+. +++..+.++.|.+..
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 44678999999999999999999999999995532211 45799999999999999999 999999999999943
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=6.5e-06 Score=74.98 Aligned_cols=70 Identities=26% Similarity=0.430 Sum_probs=61.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
....+|+|-|||.++++++|+.+|+.||.+.. |+.-. ..+|..||+|-+.-+|++|++. ++.+|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~-ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE-IRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhh-hhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35678999999999999999999999998775 55433 3467999999999999999998 99999998887
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=3.7e-07 Score=86.57 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=118.2
Q ss_pred CCeEEEcCCCCCCCHH-HHHHhhcCCCcee-EEEEC-CCCCcee-EEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 58 FPVVRLRGLPFNCTDI-DICKFFAGLDIVD-VLLVN-KNGRFSG-EAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~-dL~~~F~~~giv~-v~~~~-~~g~~kG-~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
.....+.++-+...+. ..+..|.+++.++ +.+-. ......+ ++++++....+++.|....+..+.++.+.|..+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 4456777887666665 5788999999766 54432 2222223 89999999999999999989999999888866554
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEe-eCC
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA-CRP 212 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~-~~~ 212 (265)
++..... + ..........++|++||+..+.+.||...|..++.+.. |.+. .-.
T Consensus 651 ~~~~~~~-----------------------k--vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~-vqi~~h~n 704 (881)
T KOG0128|consen 651 EEKEENF-----------------------K--VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEV-VQIVIHKN 704 (881)
T ss_pred hhhhhcc-----------------------C--cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhh-HHHHHHhh
Confidence 4311000 0 00011124468999999999999999999999996653 5554 333
Q ss_pred CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
+++.+|.|||+|..+++|.+|+.. +++.++-..+.|
T Consensus 705 ~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 705 EKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred ccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 789999999999999999999998 666666444444
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=3.2e-05 Score=72.37 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC----CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP----DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYV 246 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~----~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i 246 (265)
.+.++.|||.||+.+++++.|...|..||.+. +|.|+.-. ..+.+-||||.|-+..||++||+. +|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla-svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLA-SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCccc-ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45678899999999999999999999999665 36665332 245677999999999999999998 9999999998
Q ss_pred EEEeCC
Q 024584 247 ELFPST 252 (265)
Q Consensus 247 ~V~~~~ 252 (265)
.+-+..
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 887764
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.90 E-value=4.3e-05 Score=71.55 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eEEE-ECC----CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLL-VNK----NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v~~-~~~----~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
.+..+.|||+||++.++|+.|...|..||++ .+.+ ... ..+.+-|+||-|-+..||++|++ +++..+.++.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5678899999999999999999999999954 4543 332 34567799999999999999999 999999999988
Q ss_pred Eeec
Q 024584 128 VFRC 131 (265)
Q Consensus 128 v~~~ 131 (265)
+.++
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 8655
No 153
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.76 E-value=3.2e-05 Score=56.06 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=51.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC-------CCCCceeEEEEEECCHHHHHHHHHhCCCeeCCe-E
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR-------PDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR-Y 245 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~-------~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr-~ 245 (265)
....|.|-|.|.. ....|.++|++||.+.+...+..+ +.-....+-.|+|+++.+|.+||++||+.|+|. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456889999988 556789999999965443311111 111123489999999999999999999999885 4
Q ss_pred EEEEeCCH
Q 024584 246 VELFPSTP 253 (265)
Q Consensus 246 i~V~~~~~ 253 (265)
|-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777643
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=0.00018 Score=59.92 Aligned_cols=97 Identities=25% Similarity=0.228 Sum_probs=76.1
Q ss_pred HHHHHH-hCCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCC
Q 024584 110 VEFALQ-RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVK 188 (265)
Q Consensus 110 A~~Al~-~~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t 188 (265)
|..|-. +++....+|.++|..+.. ..|+|.||+.-++
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~s 44 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGAS 44 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhhh
Confidence 455554 788888999999865442 3699999999999
Q ss_pred HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh--CCC---eeCCeEEEEE
Q 024584 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK--DKM---TIGSRYVELF 249 (265)
Q Consensus 189 ~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~--~g~---~l~gr~i~V~ 249 (265)
.|.|.+-|+.||.++..|.+ .|..+++++.++|+|...-.|.+|+.. ++- +..+++..|.
T Consensus 45 ndll~~~f~~fg~~e~av~~-vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 45 NDLLEQAFRRFGPIERAVAK-VDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hHHHHHhhhhcCccchheee-ecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999999988865544 466899999999999999999999886 333 3345555553
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.53 E-value=0.00051 Score=50.45 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECC-CCCceeEEEEEeCCHHHHHHHHH-h--C---CCccCCeeEEEee
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQ-R--D---RQNMGRRYVEVFR 130 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~-~g~~kG~afV~F~~~e~A~~Al~-~--~---~~~l~~r~I~v~~ 130 (265)
.+.|+|.+++..++.++|++.|+.++.|. .+|- .|.. .|||.|.++++|++|++ + . +..+.+..+.+..
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~--yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVA--YVDFSRGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EE--EEE--TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcc--eEEecCCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 36899999999999999999999999444 2332 2322 79999999999999997 3 2 3446677666654
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
..
T Consensus 77 Le 78 (105)
T PF08777_consen 77 LE 78 (105)
T ss_dssp --
T ss_pred CC
Confidence 43
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.52 E-value=0.00067 Score=46.92 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=44.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~ 115 (265)
+.|..+...+|+ .|..+...||.++|++||-+.|-.++.+ .|||.....+.|..|+.
T Consensus 4 ~~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT-----SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 4 PQPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT-----SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp ---SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT-----EEEEEECCCHHHHHHHH
T ss_pred CCCCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC-----cEEEEeecHHHHHHHHH
Confidence 345566777777 9999999999999999998888777665 69999999999999988
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.47 E-value=0.0006 Score=49.43 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEE-E-EC-------CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCee
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVL-L-VN-------KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~-~-~~-------~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~ 125 (265)
...+.|.|=+.|.. ....|.+.|+.|| |++.. + .+ +.-.....--|+|.++.+|.+||+.||..|.|..
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34677999999988 6677889999999 77653 0 00 1112234889999999999999999999999876
Q ss_pred EE-Eeec
Q 024584 126 VE-VFRC 131 (265)
Q Consensus 126 I~-v~~~ 131 (265)
|- |.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 65 5444
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.47 E-value=0.00015 Score=62.76 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCcee-ceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIE-DKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~-~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++||+||-|-+|++||.+.....|+-. ..+++..+. +|+++|||.|...+..+.++-|+. -.++|.|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3557899999999999999999999988321 114455444 799999999999999999999997 8899999887777
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
...+.
T Consensus 158 ~~NK~ 162 (498)
T KOG4849|consen 158 SYNKT 162 (498)
T ss_pred ccchh
Confidence 66654
No 159
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.36 E-value=0.00013 Score=63.20 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE--CCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV--NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~--~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
.....+|++|++++++++|+.+|..++ |..+.+. ..++.++|+|||.|.....+..|+......+.++++.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 344455999999999999999999999 5445443 358999999999999999999998876677889988885443
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.34 E-value=0.0002 Score=62.05 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCcee---EEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVD---VLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~giv~---v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
...++||+||-|.+|++||.+.....|+-+ +.+. + .+|.+||||+|...+....++-|+ +-.+.|.|..-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 356899999999999999999999888654 4333 4 489999999999999999999999 888889888777766
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+.+
T Consensus 159 ~NK 161 (498)
T KOG4849|consen 159 YNK 161 (498)
T ss_pred cch
Confidence 554
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.30 E-value=0.00073 Score=58.37 Aligned_cols=79 Identities=20% Similarity=0.431 Sum_probs=59.1
Q ss_pred CccEEEEcCCCCCCCHHH----H--HHhhhcCCceeceEEEeeCC-C----CCceeEEEEEECCHHHHHHHHHh-CCCee
Q 024584 174 HTEILKMRGLPFSVKKSE----I--VQFFKDYKIIEDKIHIACRP-D----GKATGEAYVEFVSVEEAKRAMCK-DKMTI 241 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~d----L--~~~F~~~g~~~~~v~i~~~~-~----g~~~G~afV~F~s~~~A~~Al~~-~g~~l 241 (265)
..+-+||-+||..+-.++ | .++|.+||.+.. |.+-+.. . ..+.| .||+|.+.+||.+||.. +|..+
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K-IvvNkkt~s~nst~~h~g-vYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK-IVVNKKTSSLNSTASHAG-VYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeE-EEecccccccccccccce-EEEEecchHHHHHHHHHhccccc
Confidence 456799999998876665 2 378999997653 4333221 1 11222 49999999999999999 99999
Q ss_pred CCeEEEEEeCCHH
Q 024584 242 GSRYVELFPSTPD 254 (265)
Q Consensus 242 ~gr~i~V~~~~~~ 254 (265)
+||.|...+-+.+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999887765
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00075 Score=43.06 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=38.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHH
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL 114 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al 114 (265)
+.|-|.|.|.+..+. +..+|..|| |+++.+- ..+-..||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 467888998777654 555888999 6665443 22348999999999999996
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.18 E-value=0.001 Score=57.51 Aligned_cols=79 Identities=13% Similarity=0.250 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCCHHHH------HHhhcCCC-ceeEEEECCC---CCceeEE--EEEeCCHHHHHHHHH-hCCCccC
Q 024584 56 PSFPVVRLRGLPFNCTDIDI------CKFFAGLD-IVDVLLVNKN---GRFSGEA--FVVFAGPIQVEFALQ-RDRQNMG 122 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL------~~~F~~~g-iv~v~~~~~~---g~~kG~a--fV~F~~~e~A~~Al~-~~~~~l~ 122 (265)
-...-|||-+||+.+-.+++ .++|.+|| |..|++-.++ ....+.+ ||+|.+.|||.+|++ .++..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34667999999988877772 57899999 6666543222 2222334 999999999999999 9999999
Q ss_pred CeeEEEeecchh
Q 024584 123 RRYVEVFRCKRQ 134 (265)
Q Consensus 123 ~r~I~v~~~~~~ 134 (265)
||-|+....+.+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999988665543
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00098 Score=61.24 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHhhcCCC-ceeE-EEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC-ee
Q 024584 56 PSFPVVRLRGLPFNCTD------IDICKFFAGLD-IVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR-RY 125 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te------~dL~~~F~~~g-iv~v-~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~-r~ 125 (265)
--+.+|+|-|+|---.. .-|.++|+.+| ++.. ...+..|.++||.|++|+++.+|+.|++ +||+.|.. ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 55789999999964322 23678899999 6665 3357777799999999999999999999 99998863 34
Q ss_pred EEE
Q 024584 126 VEV 128 (265)
Q Consensus 126 I~v 128 (265)
..|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 444
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0028 Score=58.32 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=61.8
Q ss_pred CCccEEEEcCCCCCCC------HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC-Ce
Q 024584 173 EHTEILKMRGLPFSVK------KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG-SR 244 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t------~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~-gr 244 (265)
....+|+|-|.|.--. ..-|.++|+.+|.+.. ..++.++.|..+|+.|++|.+..+|+.|++. ||+.|. +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn-~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN-MYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc-eeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4557899999996422 3456788999996653 6777788888999999999999999999998 998885 56
Q ss_pred EEEEEeC
Q 024584 245 YVELFPS 251 (265)
Q Consensus 245 ~i~V~~~ 251 (265)
+..|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6666544
No 166
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.02 E-value=0.0028 Score=48.87 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=44.1
Q ss_pred HHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHHHH
Q 024584 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEA 256 (265)
Q Consensus 190 ~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~e~ 256 (265)
++|.+.|..||.+. -|+++. +.-.|+|.+-+.|.+||.++|..++|+.|.|.+-++.-+
T Consensus 51 ~~ll~~~~~~Gevv-LvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVV-LVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-EC-EEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceE-EEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 47888899999654 355542 257999999999999999999999999999999988644
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.95 E-value=0.0019 Score=41.13 Aligned_cols=52 Identities=23% Similarity=0.497 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al 234 (265)
+.|.|.|.|.+.. +++..+|.+||.+.+ +.+. ...-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~-~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVD-IYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEE-EEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 4688899887665 456679999997653 3332 12337999999999999996
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.94 E-value=0.0035 Score=48.32 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCC------CCCH---HHHHHhhcCCCc-eeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCee
Q 024584 56 PSFPVVRLRGLPF------NCTD---IDICKFFAGLDI-VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125 (265)
Q Consensus 56 ~~~~~vfV~nLp~------~~te---~dL~~~F~~~gi-v~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~ 125 (265)
+++.||.|.=+.. ...+ .+|.+.|..||. +=++++. +.-+|+|.+-+.|-+||++++..++|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEE
Confidence 5566777766651 2222 267888889993 3345544 4689999999999999999999999999
Q ss_pred EEEeecchhhhHHHHhh
Q 024584 126 VEVFRCKRQDYYNAVAS 142 (265)
Q Consensus 126 I~v~~~~~~~~~~~~~~ 142 (265)
|.|...++ +|......
T Consensus 99 l~i~LKtp-dW~~~l~~ 114 (146)
T PF08952_consen 99 LKIRLKTP-DWLKGLEE 114 (146)
T ss_dssp EEEEE------------
T ss_pred EEEEeCCc-cHHHHHHH
Confidence 99977664 34443333
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.75 E-value=0.00074 Score=56.31 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=52.8
Q ss_pred HHHHHhhh-cCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 190 SEIVQFFK-DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 190 ~dL~~~F~-~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
+||...|+ +||.++. +.+..+-.-.-.|-++|.|...++|++|++. |+..++|++|....+.-..+.++.
T Consensus 83 Ed~f~E~~~kygEiee-~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~ 154 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEE-LNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAI 154 (260)
T ss_pred HHHHHHHHHHhhhhhh-hhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhh
Confidence 45555555 6887664 4444333445688999999999999999998 999999999999887766555543
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.69 E-value=0.001 Score=55.47 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCcee-EEEEC--CC--------CCcee----EEEEEeCCHHHHHHHHH-hCCCc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLDIVD-VLLVN--KN--------GRFSG----EAFVVFAGPIQVEFALQ-RDRQN 120 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~giv~-v~~~~--~~--------g~~kG----~afV~F~~~e~A~~Al~-~~~~~ 120 (265)
....||+++||+.++-.-|+++|+.||.|. |.+.. .. |.+++ .|+|+|.+...|..... +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 467999999999999999999999999776 44431 12 23322 48999999999999877 99999
Q ss_pred cCCee
Q 024584 121 MGRRY 125 (265)
Q Consensus 121 l~~r~ 125 (265)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 171
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0064 Score=55.52 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=61.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhc-CCCcee-EEE-EC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccC----C
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFA-GLDIVD-VLL-VN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMG----R 123 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~-~~giv~-v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~----~ 123 (265)
+.+..+..||||++||.-++-++|..+|+ -||-|- +-| .| +-+-.+|-|=|+|.+..+.-+||..--..|. .
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 45678899999999999999999999999 577444 433 34 4578999999999999999999983222221 3
Q ss_pred eeEEEeecc
Q 024584 124 RYVEVFRCK 132 (265)
Q Consensus 124 r~I~v~~~~ 132 (265)
+.|+|.+-.
T Consensus 444 KRVEIkPYv 452 (520)
T KOG0129|consen 444 KRVEIKPYV 452 (520)
T ss_pred eeeeeccee
Confidence 456665443
No 172
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.66 E-value=0.0097 Score=39.04 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----CceeEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGL----DIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~----giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~ 115 (265)
...|+|+|+ -+++.+||+.+|..+ ++..|-.+|.+ .|=|.|.+.+.|.+||.
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 357999998 568999999999988 66667666654 48899999999999996
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.56 E-value=0.016 Score=38.04 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=42.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcC--CceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHH
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~--g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~ 235 (265)
...|+|+|+ .+.+.+||+.+|..| ......|..+.|. -|=|.|.+.+.|.+||.
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHH
Confidence 457999999 457888999999998 1223358888653 28999999999999986
No 174
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.0039 Score=52.07 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCcee--EEEECCCCCceeEEEEEeCCHHHHHHHHH-hC-CCc---cCCeeEEEee
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RD-RQN---MGRRYVEVFR 130 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~giv~--v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~-~~~---l~~r~I~v~~ 130 (265)
..|+|.||+.-++-+.|..-|+.||.++ |+++|..++..+.++|.|...-.|.+|+. +. +.. ..+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6799999999999999999999999766 66678889999999999999999999998 42 222 3456655543
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.20 E-value=0.023 Score=39.39 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=40.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
...+.+|. .|......||.++|++||-+. |..+.| + -|||.+...+.|..|+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~--VsWi~d-T-----SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY--VSWIND-T-----SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE--EEEECT-T-----EEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE--EEEEcC-C-----cEEEEeecHHHHHHHHHH
Confidence 44566777 999999999999999999764 666644 3 499999999999998875
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.14 E-value=0.0061 Score=54.41 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=52.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC---C---CCCc--------eeEEEEEECCHHHHHHHHHhC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR---P---DGKA--------TGEAYVEFVSVEEAKRAMCKD 237 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~---~---~g~~--------~G~afV~F~s~~~A~~Al~~~ 237 (265)
+.++|.+.|||.+-.-+.|.++|+.+|.+. +|+|+.- + .+.+ +-+|+|+|...+.|.+|-++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~Ik-sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIK-SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhccccee-eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 678999999999988899999999999877 4888754 2 2222 456999999999999998873
No 177
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.99 E-value=0.014 Score=51.59 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=59.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC----CCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD----GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~----g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
..|-|.||..++|.++++.+|..+|.+.+ +.|..... ....-.|||.|.+...+..|-.+..+.+=+|.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~e-lrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPE-LRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccc-ccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 48999999999999999999999997764 55543221 23456899999999999999888667777888777654
No 178
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.87 E-value=0.012 Score=41.45 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=46.9
Q ss_pred EEEEeCCHHHHHHHHHh--CCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccE
Q 024584 100 AFVVFAGPIQVEFALQR--DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177 (265)
Q Consensus 100 afV~F~~~e~A~~Al~~--~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (265)
|.|+|..+.-|++-+++ +...+++..+.|....-....- .+ -.-......++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~----------------------~k----~qv~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL----------------------QK----FQVFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc----------------------eE----EEEEEcccCCE
Confidence 78999999999999984 4445677776664332111000 00 00011235678
Q ss_pred EEEcCCCCCCCHHHHHHhhh
Q 024584 178 LKMRGLPFSVKKSEIVQFFK 197 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~ 197 (265)
|.|.|||...++++|++..+
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999988553
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.78 E-value=0.037 Score=47.24 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=54.6
Q ss_pred cEEEEcCC--CCCCC---HHHHHHhhhcCCceeceEEEeeCCCC--CceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 176 EILKMRGL--PFSVK---KSEIVQFFKDYKIIEDKIHIACRPDG--KATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 176 ~~l~v~nL--p~~~t---~~dL~~~F~~~g~~~~~v~i~~~~~g--~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
..|.++|+ +-.++ ++++++-+++||.|.. |.|...+.- ..----||+|...++|.+|+-. ||.+|+||.+.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~-viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGN-VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceee-EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 34555665 22343 5688899999998875 444444321 1112379999999999999887 99999999998
Q ss_pred EEeCCHHH
Q 024584 248 LFPSTPDE 255 (265)
Q Consensus 248 V~~~~~~e 255 (265)
.-.-..+.
T Consensus 361 A~Fyn~ek 368 (378)
T KOG1996|consen 361 ACFYNLEK 368 (378)
T ss_pred heeccHHh
Confidence 75554443
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.76 E-value=0.0057 Score=51.11 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=56.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-C--------CCc----eeEEEEEECCHHHHHHHHHh-CCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-D--------GKA----TGEAYVEFVSVEEAKRAMCK-DKM 239 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~--------g~~----~G~afV~F~s~~~A~~Al~~-~g~ 239 (265)
...+||+.|+|+.....-|+++|+.||.|- .|.+.... . |.+ --.|.|+|.+...|.++... |++
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVG-RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVG-RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccc-eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999999999999999775 35554332 2 222 23488999999999998776 999
Q ss_pred eeCCeE
Q 024584 240 TIGSRY 245 (265)
Q Consensus 240 ~l~gr~ 245 (265)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999975
No 181
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.51 E-value=0.013 Score=52.46 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECC-------CCCc--------eeEEEEEeCCHHHHHHHHHhC
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNK-------NGRF--------SGEAFVVFAGPIQVEFALQRD 117 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~-------~g~~--------kG~afV~F~~~e~A~~Al~~~ 117 (265)
+..+|.+-|||.+-.-+.|.++|..+| |..|+|.++ .+.. +-+|+|+|...+.|.+|.++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 678999999999999999999999999 555766543 1222 567999999999999999944
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.43 E-value=0.027 Score=50.40 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CC-CeeCCeEEEEEeCCH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK-MTIGSRYVELFPSTP 253 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g-~~l~gr~i~V~~~~~ 253 (265)
..+|+.||...++.+||..+|...-+.-..-.++ -.|||||.+.+..-|.+|++. +| ..+.|.+++|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999998754322211222 247999999999999999997 54 588999999988877
Q ss_pred HHHH
Q 024584 254 DEAR 257 (265)
Q Consensus 254 ~e~~ 257 (265)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 6533
No 183
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=0.095 Score=45.00 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=56.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCe-EEEEEeCCH
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSR-YVELFPSTP 253 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr-~i~V~~~~~ 253 (265)
..-|.|-+.|...+. -|..+|+.||.|.+ ++. -.+| -+-+|.|.+..+|.+||.+||+.|+|. .|-|.+++-
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvk--hv~-~~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVK--HVT-PSNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeee--eec-CCCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 445788888877654 47789999997653 222 1233 489999999999999999999999874 577888665
Q ss_pred HHHH
Q 024584 254 DEAR 257 (265)
Q Consensus 254 ~e~~ 257 (265)
+.+.
T Consensus 270 ksvi 273 (350)
T KOG4285|consen 270 KSVI 273 (350)
T ss_pred HHHh
Confidence 5444
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.22 E-value=0.31 Score=35.96 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=51.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g 243 (265)
....+.+-..|+-++-++|..+.+.+-.....++|+++.. .++=.+.++|++.++|..-... ||+.++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455666677777778888777666654444577877644 3666799999999999999888 9998863
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.22 E-value=0.011 Score=49.40 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=48.7
Q ss_pred HHHHhhc-CCC-ceeEEEECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhhhHHHHh
Q 024584 74 DICKFFA-GLD-IVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQDYYNAVA 141 (265)
Q Consensus 74 dL~~~F~-~~g-iv~v~~~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~~~~~~~ 141 (265)
||...|+ .|| |.++.+-+. .-.-.|-+||.|...++|++|++ +|+..+.|++|....+.-..+..+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C 155 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAIC 155 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhh
Confidence 3444444 677 444433332 34567899999999999999999 99999999999887666555555443
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.92 E-value=0.051 Score=46.62 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCee-EEEeecchhh
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY-VEVFRCKRQD 135 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~-I~v~~~~~~~ 135 (265)
+.-|-|-+.|+.... -|..+|+.|| |++++.- .+| .+-+|.|.+.-+|+|||.+|+..|++-. |-|.+|..+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~-~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP-SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC-CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 556777788776543 5677899999 6676543 333 4899999999999999999999998764 5688888776
Q ss_pred hHHHH
Q 024584 136 YYNAV 140 (265)
Q Consensus 136 ~~~~~ 140 (265)
+....
T Consensus 272 vi~~s 276 (350)
T KOG4285|consen 272 VINGS 276 (350)
T ss_pred Hhccc
Confidence 65443
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.86 E-value=0.061 Score=50.17 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhc-CCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee---CCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKD-YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI---GSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l---~gr~i~ 247 (265)
...+.|+|.||---.|.-+|+.++.. .|+|+.. ++ |+ -+--|||.|.+.++|..-... ||... +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm-Dk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM-DK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HH-HH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 45689999999999999999999995 5566642 33 32 233599999999999998887 88765 689999
Q ss_pred EEeCCHHHHHHHH
Q 024584 248 LFPSTPDEARRAE 260 (265)
Q Consensus 248 V~~~~~~e~~~~~ 260 (265)
+.+.+..+|..++
T Consensus 516 adf~~~deld~hr 528 (718)
T KOG2416|consen 516 ADFVRADELDKHR 528 (718)
T ss_pred eeecchhHHHHHh
Confidence 9999999988654
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.80 E-value=0.015 Score=52.57 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=57.6
Q ss_pred ccEEEEcCCCCCC-CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 175 TEILKMRGLPFSV-KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 175 ~~~l~v~nLp~~~-t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
.+.|-+.-.|+.. |-.+|..+|.+||.+++ |.+-+.. --|.|+|.+..+|-.|-.-++..|++|.|.|++..+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n-~qv~~~~-----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIEN-IQVDYSS-----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCcccc-ccccCch-----hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3455565566653 57899999999997764 5554332 239999999999999988899999999999999876
No 189
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.80 E-value=0.21 Score=33.28 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=44.4
Q ss_pred CCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 186 SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 186 ~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
.++-+||+..+..|+.. .|..+.+| =||.|.+.++|++|... |++.+.+..|..
T Consensus 11 ~~~v~d~K~~Lr~y~~~----~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD----RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc----eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46889999999999854 45567676 69999999999999998 998887776543
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.55 E-value=0.078 Score=45.32 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred eEEEcCC--CCCCC---HHHHHHhhcCCC-ceeEEEE-CCC--CCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 60 VVRLRGL--PFNCT---DIDICKFFAGLD-IVDVLLV-NKN--GRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 60 ~vfV~nL--p~~~t---e~dL~~~F~~~g-iv~v~~~-~~~--g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
.|.++|+ +-.++ |+++.+-+..|| +..|+|. .++ -.-----||+|+..++|-+|+- +||.+|+||.+...
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3555555 33333 345777778899 5555443 321 1112247999999999999998 99999999987654
Q ss_pred e
Q 024584 130 R 130 (265)
Q Consensus 130 ~ 130 (265)
.
T Consensus 363 F 363 (378)
T KOG1996|consen 363 F 363 (378)
T ss_pred e
Confidence 3
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.28 E-value=0.15 Score=47.71 Aligned_cols=83 Identities=6% Similarity=0.034 Sum_probs=64.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhc-CCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCcc---CCeeEEE
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFA-GLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM---GRRYVEV 128 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~-~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l---~~r~I~v 128 (265)
.......|+|.||=.-.|.-.|+.++. .+|+|.-..+| +-|..|||.|.+.++|-.-.. |||... +++.|.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 456788999999999999999999999 45565532444 234589999999999999888 888875 5778888
Q ss_pred eecchhhhHHH
Q 024584 129 FRCKRQDYYNA 139 (265)
Q Consensus 129 ~~~~~~~~~~~ 139 (265)
......++..+
T Consensus 517 df~~~deld~h 527 (718)
T KOG2416|consen 517 DFVRADELDKH 527 (718)
T ss_pred eecchhHHHHH
Confidence 77777666544
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.61 E-value=0.13 Score=41.35 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=43.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhc-CCce--eceEEEeeCC--CC-CceeEEEEEECCHHHHHHHHHh-CCCeeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKD-YKII--EDKIHIACRP--DG-KATGEAYVEFVSVEEAKRAMCK-DKMTIG 242 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~-~g~~--~~~v~i~~~~--~g-~~~G~afV~F~s~~~A~~Al~~-~g~~l~ 242 (265)
...+|.|++||++.|++++.+.+++ ++.. -..+.-.... .. ....-|||.|.+.+++..-... +|+.+-
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4458999999999999999998777 5432 1123311221 11 1245699999999998888887 887763
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.38 E-value=0.31 Score=45.32 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC---ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-h--CCCccCCeeEE
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD---IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-R--DRQNMGRRYVE 127 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g---iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~--~~~~l~~r~I~ 127 (265)
+....|.|.|+-||.++-+|+|+.+|+.-. ++.+.+-..+ -=||+|++..||+.|.+ + .-+.|.|++|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 456688999999999999999999999632 4455432222 25999999999999976 3 33446677664
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.34 E-value=0.26 Score=39.68 Aligned_cols=66 Identities=17% Similarity=0.058 Sum_probs=42.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcC-CCce---e-EE-EEC--CCC-CceeEEEEEeCCHHHHHHHHH-hCCCcc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAG-LDIV---D-VL-LVN--KNG-RFSGEAFVVFAGPIQVEFALQ-RDRQNM 121 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~-~giv---~-v~-~~~--~~g-~~kG~afV~F~~~e~A~~Al~-~~~~~l 121 (265)
.....|-||+||++.||+++.+.+++ ++.. . +. .+. ... ....-|||.|.+.+++..-.. ++|..+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 45669999999999999999998877 5522 1 21 121 111 234579999999999888887 888765
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.24 E-value=0.07 Score=48.47 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNC-TDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~-te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
..+.+.|-+.-.|+.. +-++|..+|.+|| |..|.+.+. .-.|.|+|.+..+|-+|-..++..|++|.|+|++..
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 3568888898888877 5578999999999 666655433 336999999999999999999999999999998765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.80 E-value=0.8 Score=41.62 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=57.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g 243 (265)
...|+|-.+|...|-.||..|...+-.....++|++|... ++=...|+|++.++|..--+. ||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999999988755556899986433 455699999999999999887 9998864
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.78 E-value=0.66 Score=43.25 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=51.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhc--CCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh---CCCeeCCeEEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKD--YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK---DKMTIGSRYVEL 248 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~--~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~---~g~~l~gr~i~V 248 (265)
..+.|+|+-+|.++-.|+++.+|.. +-.+. ++.+..+. + =||+|++..||..|.+. .-++|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~i-scefa~N~-n-----WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVI-SCEFAHND-N-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCce-eeeeeecC-c-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4467788999999999999999987 33332 24444332 2 59999999999998763 567888888755
Q ss_pred E
Q 024584 249 F 249 (265)
Q Consensus 249 ~ 249 (265)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 4
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.52 E-value=2.3 Score=31.40 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=44.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-cee-EEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR 123 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~ 123 (265)
...+-+-..|+.++-++|..|.+.+- .++ ++++.....++=-+.++|.+.++|+.-.+ .||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444455566666667776666654 343 45544333355579999999999999988 99998763
No 199
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.48 E-value=0.33 Score=47.57 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=61.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC--eeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR--RYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~--r~I~v~~ 130 (265)
...+.+.+++++|+..+....|...|..||.+.++-++. | .-||||.+.+...|+.|++ +-+..|++ +.+.|..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-C--CcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 557789999999999999999999999999776543332 2 2499999999999999999 88998874 5566644
Q ss_pred c
Q 024584 131 C 131 (265)
Q Consensus 131 ~ 131 (265)
+
T Consensus 528 a 528 (975)
T KOG0112|consen 528 A 528 (975)
T ss_pred c
Confidence 4
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.38 E-value=1.2 Score=29.55 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=43.3
Q ss_pred CCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 69 NCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 69 ~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
.++-+||+..+..++-.+|+ .|++| =||.|.+..+|+++.. .++..+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~-~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIR-DDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcceEE-ecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 57789999999999887776 56665 6999999999999999 788777665544
No 201
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=90.04 E-value=0.39 Score=35.84 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=29.4
Q ss_pred ccEEEEcCCCCCC---------CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECC
Q 024584 175 TEILKMRGLPFSV---------KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS 226 (265)
Q Consensus 175 ~~~l~v~nLp~~~---------t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s 226 (265)
+.++.|.|+|... +.++|++.|..|.... |+.+.++.| ++|+++|+|.+
T Consensus 8 PwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k--v~~l~~~~g-h~g~aiv~F~~ 65 (116)
T PF03468_consen 8 PWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK--VKPLYGKQG-HTGFAIVEFNK 65 (116)
T ss_dssp S-EEEEE----EE-TTS-EE---SHHHHHHHHH---SE--EEEEEETTE-EEEEEEEE--S
T ss_pred CCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce--eEECcCCCC-CcEEEEEEECC
Confidence 3478888887643 4578999999998765 666666664 78999999996
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.34 E-value=1.2 Score=36.04 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-C--CCeeCCeEEEEEeCCHH
Q 024584 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D--KMTIGSRYVELFPSTPD 254 (265)
Q Consensus 188 t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~--g~~l~gr~i~V~~~~~~ 254 (265)
..+.|+++|..++.... ...+ ++-+-..|.|.+.++|.+|... + +..+.|..++|+.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~-~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQ-FSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-E-EEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceE-EEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 46889999999985542 3333 2233589999999999999987 8 99999999999987543
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.06 E-value=0.63 Score=44.18 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=56.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
+-++..+|||+|+...+..+-++.....||.|-...... |+|..|....-...|+. ++.-.+++..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678999999999999999999999999665322111 99999999999999998 77777877766653
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.41 E-value=3.2 Score=37.91 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC--ceeEEEECCCCC-ceeEEEEEeCCHHHHHHHHH-hCCCccCC
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLLVNKNGR-FSGEAFVVFAGPIQVEFALQ-RDRQNMGR 123 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g--iv~v~~~~~~g~-~kG~afV~F~~~e~A~~Al~-~~~~~l~~ 123 (265)
+.+.+...|+|=.+|..+|-.||..|...+- |.+++++. +|. ++=...|+|.+.++|..-.+ +||+.|..
T Consensus 69 ~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 69 KNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred ccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3344488999999999999999999999775 66776654 332 33358999999999999998 99998864
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.83 E-value=2.9 Score=33.85 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=41.5
Q ss_pred CHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hC--CCccCCeeEEEeecc
Q 024584 71 TDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RD--RQNMGRRYVEVFRCK 132 (265)
Q Consensus 71 te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~--~~~l~~r~I~v~~~~ 132 (265)
..+.|+++|..++ ++....+. +-+-..|.|.+.++|.+|.. ++ +..+.|..+.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 4578999999998 66655553 33468999999999999999 88 888999999997764
No 206
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.39 E-value=6.1 Score=30.51 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCCCCCCeEEEcCCCCCCC----HHHHHHhhcCCCcee-EEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeE
Q 024584 52 FPPPPSFPVVRLRGLPFNCT----DIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYV 126 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~t----e~dL~~~F~~~giv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I 126 (265)
.+..++-.+|-|+=|..++. -..+....+.||.++ |.+. |+ -.|.|.|.+..+|.+|+..-.....|..+
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---Gr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GR--QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CC--ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 34456677888876665553 334566677899555 4433 32 26999999999999999843445666666
Q ss_pred EEe
Q 024584 127 EVF 129 (265)
Q Consensus 127 ~v~ 129 (265)
.+.
T Consensus 155 qCs 157 (166)
T PF15023_consen 155 QCS 157 (166)
T ss_pred Eee
Confidence 664
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.72 E-value=0.44 Score=41.62 Aligned_cols=77 Identities=12% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HhhcCCC-ceeEEEE-CCC---CC-ceeEEEEEeCCHHHHHHHHH-hCCCccCCee
Q 024584 56 PSFPVVRLRGLPFNCTDIDIC---KFFAGLD-IVDVLLV-NKN---GR-FSGEAFVVFAGPIQVEFALQ-RDRQNMGRRY 125 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~---~~F~~~g-iv~v~~~-~~~---g~-~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~ 125 (265)
-....+||-+||.....+++. ++|.+|| |..|.+. +.. +. ..--++|+|...++|..||. .++..+.++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 345678999999877666653 4788888 5555443 221 11 11138999999999999999 8999999988
Q ss_pred EEEeecc
Q 024584 126 VEVFRCK 132 (265)
Q Consensus 126 I~v~~~~ 132 (265)
++....+
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 6654443
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.59 E-value=4.5 Score=27.35 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCCCHHHHHHhhhcC-Cceec---eEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 185 FSVKKSEIVQFFKDY-KIIED---KIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 185 ~~~t~~dL~~~F~~~-g~~~~---~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
..++..+|..++... |+... .|.|..+ |+||+-... .|+.+++. ++..+.|+.|.|.++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457888999988775 43333 3445432 799998655 77788887 999999999999764
No 209
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=82.82 E-value=4.8 Score=31.06 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCccEEEEcCCCCCCC-HH---HHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Q 024584 173 EHTEILKMRGLPFSVK-KS---EIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t-~~---dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V 248 (265)
.+-.+|.|+=|..+.. .+ .+....+.||.+. +|.+. |+ -.|.|.|++..+|-+|+..-....-|+.+++
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~-SVT~c----Gr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ-SVTLC----GR--QSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcc-eeeec----CC--ceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 3456788876665543 23 4445567799776 46654 32 3699999999999999998333556666666
Q ss_pred Ee
Q 024584 249 FP 250 (265)
Q Consensus 249 ~~ 250 (265)
.+
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 54
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.74 E-value=0.5 Score=41.32 Aligned_cols=80 Identities=21% Similarity=0.401 Sum_probs=55.4
Q ss_pred CccEEEEcCCCCCCCHHHHH---HhhhcCCceeceEEEeeCCC--CC--ceeEEEEEECCHHHHHHHHHh-CCCeeCCeE
Q 024584 174 HTEILKMRGLPFSVKKSEIV---QFFKDYKIIEDKIHIACRPD--GK--ATGEAYVEFVSVEEAKRAMCK-DKMTIGSRY 245 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~---~~F~~~g~~~~~v~i~~~~~--g~--~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~ 245 (265)
....+||-+|+.....+++. +.|..||.+. .|.+..+.. .. ..--++|+|...++|..||.. +|..+.|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~-ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKIN-KIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccce-EEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34567888888775544443 5688888655 355554431 11 112289999999999999999 999999998
Q ss_pred EEEEeCCHH
Q 024584 246 VELFPSTPD 254 (265)
Q Consensus 246 i~V~~~~~~ 254 (265)
|...+.+.+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777665543
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=77.70 E-value=2.4 Score=40.42 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=56.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
++..++||+|+.+.+..+-++.....+|.|... ..+. |||..|..+.-+.+|+.+ +-..++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~-kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW-KRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhh-hhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456789999999999999999999999977532 2211 899999999999999997 88888887766544
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.24 E-value=8 Score=26.09 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCCCHHHHHHhhcCC-Ccee-----EEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 68 FNCTDIDICKFFAGL-DIVD-----VLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 68 ~~~te~dL~~~F~~~-giv~-----v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..++..+|..++... |+.. |.+.+ -|+||+-... .|+.+++ +++..+.|++|.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 457788888888865 4542 33332 3899998854 7888888 999999999999865
No 213
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.70 E-value=2.2 Score=31.82 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=31.4
Q ss_pred eEEEcCCCCCC---------CHHHHHHhhcCCCceeEEE-ECCCCCceeEEEEEeCCHHH-HHHHHHh
Q 024584 60 VVRLRGLPFNC---------TDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQ-VEFALQR 116 (265)
Q Consensus 60 ~vfV~nLp~~~---------te~dL~~~F~~~giv~v~~-~~~~g~~kG~afV~F~~~e~-A~~Al~~ 116 (265)
++.|-|+|... +.++|.+.|+.|...++.. .+.. -++|++.|+|.+.-. -..|+.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETT-EEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCC-CCcEEEEEEECCChHHHHHHHHH
Confidence 45666775543 5578999999998777644 4555 477999999998654 3445544
No 214
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.69 E-value=12 Score=33.85 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=48.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
-..+|-|.|+|....-+||...|..|+..-..|.++.|. -||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 457899999999999999999999998665567777552 499999999999999976
No 215
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.71 E-value=6.2 Score=35.57 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=46.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCcee--EEEECCCCCceeEEEEEeCCHHHHHHHHHh
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVD--VLLVNKNGRFSGEAFVVFAGPIQVEFALQR 116 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~giv~--v~~~~~~g~~kG~afV~F~~~e~A~~Al~~ 116 (265)
...|-|.|+|.....+||...|..|+-.. |..++.+ .||-.|.+...|..||.+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 56889999999999999999999987554 5666655 799999999999999986
No 216
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.80 E-value=12 Score=24.40 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=15.2
Q ss_pred HHHHHhhcCCCceeEEEEC
Q 024584 73 IDICKFFAGLDIVDVLLVN 91 (265)
Q Consensus 73 ~dL~~~F~~~giv~v~~~~ 91 (265)
++||++|+.+|.++++-++
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999977765443
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.48 E-value=9.6 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=26.0
Q ss_pred EEEEECCHHHHHHHHHh--CCCeeCCeEEEEEe
Q 024584 220 AYVEFVSVEEAKRAMCK--DKMTIGSRYVELFP 250 (265)
Q Consensus 220 afV~F~s~~~A~~Al~~--~g~~l~gr~i~V~~ 250 (265)
|.|+|....-|.+-+++ +.-.++++.+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999986 77788888877654
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=64.20 E-value=4.1 Score=40.14 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee--CCeEEEEEeCC
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI--GSRYVELFPST 252 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l--~gr~i~V~~~~ 252 (265)
.+..+.|.+-+.+..-|..+|+.||.+.. ...+++.+ .|.|+|.+.+.|..|+.. +|+.+ -|-+.+|..++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s-~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVAS-AWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhh-heeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 45667777888899999999999997764 44444433 599999999999999997 88765 57778888877
Q ss_pred HHHHH
Q 024584 253 PDEAR 257 (265)
Q Consensus 253 ~~e~~ 257 (265)
..+|-
T Consensus 373 ~~~~~ 377 (1007)
T KOG4574|consen 373 TLPMY 377 (1007)
T ss_pred ccccc
Confidence 66653
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=63.12 E-value=4 Score=31.42 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=64.0
Q ss_pred CCCHHHHHHhhcC----CCceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecchhhhHHHHhhhc
Q 024584 69 NCTDIDICKFFAG----LDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV 144 (265)
Q Consensus 69 ~~te~dL~~~F~~----~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~~~~~~~~~~~~ 144 (265)
..+-..|...+.. .+-+.+..+ ..++..+.|.+.+++.+++....-.+++..+.+...++..-.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~------- 95 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNP------- 95 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccc-------
Confidence 3455555555543 333444333 236999999999999999997777788887777554421100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHHhhhcCCce
Q 024584 145 NYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFS-VKKSEIVQFFKDYKII 202 (265)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~dL~~~F~~~g~~ 202 (265)
..........=|.|.|||.. .+++-|+.+-+.+|.+
T Consensus 96 ----------------------~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 96 ----------------------SEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred ----------------------cccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 00000012234889999987 6788888888999965
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.39 E-value=29 Score=29.99 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=34.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHH
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPI 108 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e 108 (265)
.-|+|+|||.++--.||+.-+...+-+-..+ ...| ..|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~i-swkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSI-SWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeE-eeec-CCcceeEecCCcc
Confidence 3499999999999999999998776333221 1223 4468999997643
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=59.93 E-value=25 Score=30.36 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=38.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHH
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVE 228 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~ 228 (265)
..-|++.|||.++--.||+..+...+.+.-++... -+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCcc
Confidence 34599999999999999999999988665444432 35678999998743
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.98 E-value=35 Score=29.41 Aligned_cols=103 Identities=15% Similarity=0.299 Sum_probs=52.7
Q ss_pred EEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecchhhhHHHHhhhc--ccC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024584 99 EAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEV--NYE--GIYDNDFHGSPPPSRAKRYNDKDQMEH 174 (265)
Q Consensus 99 ~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (265)
.-||.|...-.-.-.++.--..++|..|.+.--. +.....+.+. ..+ ..++..+.. .+....-.+...
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfa--d~lkvka~eakidfpsrhdwdd~fm~------~kdmdemkpger 148 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFA--DILKVKAAEAKIDFPSRHDWDDFFMD------AKDMDEMKPGER 148 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccc--hHHhhhHHhhcCCCCcccchHHHHhh------hhhhhccCCCCC
Confidence 6789998665544444433344677777774322 2222222221 111 001110000 000111122345
Q ss_pred ccEEEEcCCCCC------------CCHHHHHHhhhcCCceeceEEEee
Q 024584 175 TEILKMRGLPFS------------VKKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 175 ~~~l~v~nLp~~------------~t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
+.+|++.+||-. -+++-|+..|..||.+.. |.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~-vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRN-VDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhcccee-cCCcc
Confidence 668888888732 357899999999997653 66653
No 223
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=57.87 E-value=5.6 Score=39.21 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCcc--CCeeEEEeecch
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM--GRRYVEVFRCKR 133 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l--~~r~I~v~~~~~ 133 (265)
.....+-|.+-..+...|..+|++|| +.....+... -.|.|+|.+.+.|-.|+. ++|+.+ -|-+.+|..+..
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34556777788888999999999999 4455543322 279999999999999998 888874 466778877766
Q ss_pred hhhHHHH
Q 024584 134 QDYYNAV 140 (265)
Q Consensus 134 ~~~~~~~ 140 (265)
.++++..
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 6655443
No 224
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=54.31 E-value=56 Score=21.00 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=34.2
Q ss_pred CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCee
Q 024584 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTI 241 (265)
Q Consensus 188 t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l 241 (265)
.-.+|.++|...|+-..++..... +. ++.--+.+.+.+.|.++|+.+|..+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~--~~-~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADT--SE-FGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEec--CC-CCEEEEEECCHHHHHHHHHHCCCEE
Confidence 456788999998855444544332 22 4666667778888888888877543
No 225
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=52.21 E-value=38 Score=25.22 Aligned_cols=47 Identities=36% Similarity=0.447 Sum_probs=30.1
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEeeCC----CCCceeEEEEEECCHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIACRP----DGKATGEAYVEFVSVEEAKR 232 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~s~~~A~~ 232 (265)
.+++++||++-... |-...+.|.+..-. .|+++|||.| |+|.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46778888877766 33444434333211 5789999987 677777765
No 226
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=50.45 E-value=22 Score=28.56 Aligned_cols=65 Identities=8% Similarity=0.004 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcC-CceeceEEEeeCCCC--CceeEEEEEECCHHHHHHHHHhCCCeeCCeEE
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDY-KIIEDKIHIACRPDG--KATGEAYVEFVSVEEAKRAMCKDKMTIGSRYV 246 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~-g~~~~~v~i~~~~~g--~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i 246 (265)
.+++.+ +|+++|.++-.-. |.+. .|.+-...++ ..+|--||+|.+.++|.++++.+.....-+.|
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~-nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGH-NVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccce-EeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 456666 4555444443322 3433 2444433344 56899999999999999998875544444443
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=49.31 E-value=59 Score=22.68 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHhhhc-CCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHH
Q 024584 182 GLPFSVKKSEIVQFFKD-YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC 235 (265)
Q Consensus 182 nLp~~~t~~dL~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~ 235 (265)
-++..+++.+|++.++. |+.....|..+..+.+ .=-|||++..-.+|.....
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHH
Confidence 35678999999999988 7855555666554433 2249999998888876543
No 228
>PF14893 PNMA: PNMA
Probab=44.13 E-value=18 Score=32.24 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc----CCCceeE--EEECCCCCceeEEEEEeCCH
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFA----GLDIVDV--LLVNKNGRFSGEAFVVFAGP 107 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~----~~giv~v--~~~~~~g~~kG~afV~F~~~ 107 (265)
....|.|.+||.+|++++|.+... ++|-..| .+..+.-.. --|+|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~-~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENA-KAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhccc-ceeeeecccc
Confidence 456799999999999999988776 4564444 222222222 3689999744
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=42.92 E-value=34 Score=30.75 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=45.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC---CCceeEEEEEECCHHHHHHHHHh-CCCee
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD---GKATGEAYVEFVSVEEAKRAMCK-DKMTI 241 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~---g~~~G~afV~F~s~~~A~~Al~~-~g~~l 241 (265)
...+.|.+||...|+++|.+-..+|..-.+...+..... ..-.+.|||-|.++++...--.. +|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 357889999999999999999888653322233332111 12367899999999995554444 66554
No 230
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.15 E-value=49 Score=28.97 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=15.5
Q ss_pred EEEEeCCHHHHHHHHH
Q 024584 100 AFVVFAGPIQVEFALQ 115 (265)
Q Consensus 100 afV~F~~~e~A~~Al~ 115 (265)
|||+|.+..+|+.|++
T Consensus 1 aFVtF~~~~~a~~~~q 16 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQ 16 (325)
T ss_pred CEEEECCHHHHHHHHH
Confidence 7999999999999999
No 231
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=40.66 E-value=1.1e+02 Score=22.15 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=27.7
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEeeCC----CCCceeEEEEEECCHHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIACRP----DGKATGEAYVEFVSVEEAKRA 233 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~s~~~A~~A 233 (265)
.+.+..+|++-... ++...+.|.+..-. .|+++|||.| |.|.+.|.+-
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677777766544 55444444443222 3567787776 6677666653
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.67 E-value=1.2e+02 Score=20.72 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHhhhc-CCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHH
Q 024584 178 LKMRGLPFSVKKSEIVQFFKD-YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al 234 (265)
-|+=.++..+|+.+|++.++. |+.....|..+.-+.+ .=-|||++..-..|...-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHH
Confidence 344456779999999999988 7755545665544432 224999998877776543
No 233
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.31 E-value=29 Score=29.15 Aligned_cols=31 Identities=10% Similarity=0.295 Sum_probs=27.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCcee
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIE 203 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~ 203 (265)
....+||+-|+|..+|++-|..+.+.+|++.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 3567899999999999999999999988654
No 234
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.25 E-value=25 Score=29.51 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVL 88 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~ 88 (265)
.......++|+=|+|..+|++.|..+.+.+|++...
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 344567789999999999999999999999876543
No 235
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=37.25 E-value=1e+02 Score=21.70 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=31.2
Q ss_pred EcCCCCCCCHHHHHHhhhc-CCceeceEEEeeCC-----CCCcee------EEEEEECCH
Q 024584 180 MRGLPFSVKKSEIVQFFKD-YKIIEDKIHIACRP-----DGKATG------EAYVEFVSV 227 (265)
Q Consensus 180 v~nLp~~~t~~dL~~~F~~-~g~~~~~v~i~~~~-----~g~~~G------~afV~F~s~ 227 (265)
.=-++..+|+.||++.++. ||+....|..+.-. .|...| -|+|++...
T Consensus 24 tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 3345779999999999988 78555456554433 233222 388887764
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=35.31 E-value=48 Score=22.06 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 190 SEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 190 ~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
++|.+-|...|.....|+-+... ++.+.-.-||++....+...++ +=+.|++..|.|.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCC
Confidence 57888888888554445555555 5667778889988776644443 3366888999987643
No 237
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=33.28 E-value=17 Score=24.16 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=27.5
Q ss_pred HHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 190 SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 190 ~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
++|++.|..+......|.+ .+|..|.|.++|..++..
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~a 63 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANA 63 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHH
Confidence 6888888886644333444 389999999999887764
No 238
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=31.63 E-value=1.8e+02 Score=20.25 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=40.6
Q ss_pred EEEEcCCCCCCCHHH----HHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 177 ILKMRGLPFSVKKSE----IVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 177 ~l~v~nLp~~~t~~d----L~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
-|+|..++.+++=++ ++++|+-.-...-.+.. .|..|- -|+|+|.++-+.|+.+ .-..=.+=.|.|++
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw-~DEEGD-----p~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp 82 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKW-IDEEGD-----PCTISSQMELEEAFRLYELNKDSELNIHVFP 82 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEE-ECCCCC-----ceeecCHHHHHHHHHHHHhcCcccEEEEecC
Confidence 477777888887554 45555542222211333 355673 5899999999999886 22222255666665
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.71 E-value=46 Score=28.68 Aligned_cols=46 Identities=24% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCCCeEEEcCCCCCC------------CHHHHHHhhcCCCce---eEEEECC-----CCCceeEEE
Q 024584 56 PSFPVVRLRGLPFNC------------TDIDICKFFAGLDIV---DVLLVNK-----NGRFSGEAF 101 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~------------te~dL~~~F~~~giv---~v~~~~~-----~g~~kG~af 101 (265)
....+|++.+||-.+ +|+-|+..|..||.+ +|-+.|+ +|+..|.-|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~ 212 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQF 212 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCcccccee
Confidence 455689999998432 567799999999933 3444442 566655443
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.61 E-value=8.4 Score=36.20 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=47.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEEC--CCCCceeEEEEEeCCHHHHHHHHH-hCCCccC
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVN--KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG 122 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~--~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~ 122 (265)
--.|+|||+|++++++-++|..+++.+- ...+.+.+ ...+..-+.+|+|+.--...-|.. +|+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4578999999999999999999999876 33444333 235566688999987655555554 5555543
No 241
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=29.97 E-value=67 Score=26.23 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=34.2
Q ss_pred CHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH--hCCCccC
Q 024584 71 TDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ--RDRQNMG 122 (265)
Q Consensus 71 te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~--~~~~~l~ 122 (265)
+.++..++...++..- +++..+|...|-+.+...+.++|..|+. +....++
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 5677777777665322 3344556666666777799999999998 5544554
No 242
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=28.96 E-value=88 Score=21.94 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=33.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeC
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFA 105 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~ 105 (265)
+...-|||++++..+-|.-...+.+..+.-.++++-++....||+|-+.-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 34556999999998888776666665544445444333338899998873
No 243
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.67 E-value=1.4e+02 Score=21.10 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=21.8
Q ss_pred EEcCCCCCCCHHHHHHhhhc-CCceeceEEEe
Q 024584 179 KMRGLPFSVKKSEIVQFFKD-YKIIEDKIHIA 209 (265)
Q Consensus 179 ~v~nLp~~~t~~dL~~~F~~-~g~~~~~v~i~ 209 (265)
++=-++..+|..||++.|+. |++....|..+
T Consensus 23 ~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 23 YVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 33345679999999999988 77544445544
No 244
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=27.20 E-value=1.5e+02 Score=21.17 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=25.6
Q ss_pred HHHHhhhcCCc---eece-EEEeeCCCCCceeEEEEEECCHHHHHHHH
Q 024584 191 EIVQFFKDYKI---IEDK-IHIACRPDGKATGEAYVEFVSVEEAKRAM 234 (265)
Q Consensus 191 dL~~~F~~~g~---~~~~-v~i~~~~~g~~~G~afV~F~s~~~A~~Al 234 (265)
.+...|+.||- +... |..+ .-+..++--..|+|.|.+.|..|-
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~l-EG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETL-EGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeec-cCCCCcccEEEEEcCCHHHHHHHh
Confidence 34566777772 2111 2222 112345667999999999988654
No 245
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.01 E-value=41 Score=19.41 Aligned_cols=16 Identities=6% Similarity=0.250 Sum_probs=10.3
Q ss_pred CCCCHHHHHHhhcCCC
Q 024584 68 FNCTDIDICKFFAGLD 83 (265)
Q Consensus 68 ~~~te~dL~~~F~~~g 83 (265)
.++++++|++.|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998754
No 246
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.99 E-value=1.8e+02 Score=18.62 Aligned_cols=53 Identities=8% Similarity=0.057 Sum_probs=32.5
Q ss_pred CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEEC--CHHHHHHHHHhCCCee
Q 024584 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFV--SVEEAKRAMCKDKMTI 241 (265)
Q Consensus 188 t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~--s~~~A~~Al~~~g~~l 241 (265)
.-..|.++|..+++-...+..... .+......+|.+. +.+++.++|+.+|..+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~-~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v 68 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPS-KEEDNKILVFRVQTMNPRPIIEDLRRAGYEV 68 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecc-CCCCeEEEEEEEecCCHHHHHHHHHHCCCee
Confidence 456788999998855433433222 2233445566665 6667888888777654
No 247
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=26.73 E-value=71 Score=26.08 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=34.9
Q ss_pred CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh--CCCeeC
Q 024584 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK--DKMTIG 242 (265)
Q Consensus 188 t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~--~g~~l~ 242 (265)
+.++.+++...++... ++|- .+|...|-+.+...+.++|..|+.. ....++
T Consensus 25 ~~~~A~~~l~~~~~p~--~ViK--adGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY--VVIK--ADGLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp SHHHHHHHHHHHSSSE--EEEE--ESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CHHHHHHHHHhcCCCc--eEEc--cCCCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 6788888888876432 2343 3466656667778999999999985 544443
No 248
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=26.52 E-value=2.9e+02 Score=20.98 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=52.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEE-eCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 59 PVVRLRGL----PFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVV-FAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 59 ~~vfV~nL----p~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~-F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
+.+++|++ ...+.-.||++.|..+|..++..+=.+| =...+ =.++++....|+ .-.. --|..+.|..-+
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SG----Nvvf~~~~~~~~l~~~ie~~l~~-~fG~~v~v~vrs 78 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLGFTNVRTYIQSG----NVVFESDRDPAELAAKIEKALEE-RFGFDVPVIVRS 78 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT-EEEEEETTTT----EEEEEESS-HHHHHHHHHHHHHH-H-TT---EEEEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcCCCCceEEEeeC----CEEEecCCChHHHHHHHHHHHHH-hcCCCeEEEEee
Confidence 45778887 3458899999999999988876654444 23333 223333333443 1111 124446665556
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhc
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKD 198 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~ 198 (265)
..++....+..--. + ........++|.=|....+.+.+.++-..
T Consensus 79 ~~el~~i~~~nPf~--------------~--------~~~~~~~~~~v~fl~~~~~~~~~~~l~~~ 122 (137)
T PF08002_consen 79 AEELRAIIAANPFP--------------W--------EAEADPKRLYVTFLSGPPDAEALEELAAY 122 (137)
T ss_dssp HHHHHHHHTT--GG--------------G--------GS----SEEEEEEE-TT--HHHHHHHHTS
T ss_pred HHHHHHHHHHCCCc--------------c--------cccCCcceEEEEEeCCCCCHHHHHHHhcc
Confidence 66665544432000 0 00123345666666666677766666554
No 249
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.51 E-value=1.7e+02 Score=18.16 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=31.2
Q ss_pred HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCe
Q 024584 189 KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMT 240 (265)
Q Consensus 189 ~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~ 240 (265)
-.+|.+.+.++|.-...+..... .......-.+...+.+.+.++|+.+|..
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~-~~~~~~~v~~~ve~~~~~~~~L~~~G~~ 63 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVE-KKGGKALLIFRTEDIEKAIEVLQERGVE 63 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEcc-CCCCeEEEEEEeCCHHHHHHHHHHCCce
Confidence 35677888888854333433222 1123445566667888888888887754
No 250
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.27 E-value=2.5e+02 Score=20.48 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=33.6
Q ss_pred CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 188 t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
-+.+|.++.+..|+...+|.+- .++ +.=||++++.+.+....+|..
T Consensus 25 vWPE~~a~lk~agi~nYSIfLd-e~~--n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 25 VWPELLALLKEAGIRNYSIFLD-EEE--NLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred ccHHHHHHHHHcCCceeEEEec-CCc--ccEEEEEEEcChHHHHHHHhC
Confidence 3678999999999988776553 223 456999999977766666654
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.25 E-value=81 Score=28.46 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=45.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-cee-EEEE-CC---CCCceeEEEEEeCCHHHHHHHHH-hCCCcc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVD-VLLV-NK---NGRFSGEAFVVFAGPIQVEFALQ-RDRQNM 121 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~-v~~~-~~---~g~~kG~afV~F~~~e~A~~Al~-~~~~~l 121 (265)
..-+.|.|+.||...++++|.+-..++- -+. ..+. .. ...-.+.|||.|..+++...-.. .+|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467899999999999999999888864 122 1222 11 12235789999999999766665 666553
No 252
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.84 E-value=1e+02 Score=20.48 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=15.4
Q ss_pred EEEEEECCHHHHHHHHHh
Q 024584 219 EAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 219 ~afV~F~s~~~A~~Al~~ 236 (265)
+.+|.|.|..+|.+|-+.
T Consensus 3 ~~~i~F~st~~a~~~ek~ 20 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKL 20 (73)
T ss_pred eEEEEECCHHHHHHHHHH
Confidence 689999999999988664
No 253
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.32 E-value=99 Score=26.53 Aligned_cols=25 Identities=8% Similarity=0.337 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDY 199 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~ 199 (265)
.....|.||||++|..-|..++...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhcc
Confidence 3467899999999999999988864
No 254
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=24.27 E-value=1.3e+02 Score=20.91 Aligned_cols=47 Identities=26% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEe--eCC--CCCceeEEEEEECCHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIA--CRP--DGKATGEAYVEFVSVEEAKR 232 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~--~~~--~g~~~G~afV~F~s~~~A~~ 232 (265)
.+.+..||++-+.. ++.-.+.|.+. ... .+.++|+|.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 45677788777654 55444444432 222 3556777776 667776664
No 255
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.81 E-value=3.6e+02 Score=25.98 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHhhhcCC---ceeceEEEeeCC-----------CCC---------------------
Q 024584 172 MEHTEILKMRGLPFS-VKKSEIVQFFKDYK---IIEDKIHIACRP-----------DGK--------------------- 215 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~-~t~~dL~~~F~~~g---~~~~~v~i~~~~-----------~g~--------------------- 215 (265)
...+++|-|=||.|+ +.-.||.-+|++|- -..-+|.|.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 78899999998863 122235543221 111
Q ss_pred ----------------ceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEe
Q 024584 216 ----------------ATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELFP 250 (265)
Q Consensus 216 ----------------~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~~ 250 (265)
..=||.|+|.+.+.|...-.. +|..+.. ..|.+..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 134799999999999999998 9998864 4444443
No 256
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.43 E-value=80 Score=21.16 Aligned_cols=61 Identities=23% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHhhhcCCceeceEEEeeCCC-CCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 190 SEIVQFFKDYKIIEDKIHIACRPD-GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 190 ~dL~~~F~~~g~~~~~v~i~~~~~-g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
.+|.+-|...|.....|+-+...+ +.+--.=+|+.....+-... .+=+.|+++.|+|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I--l~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI--LNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce--EeehhhCCeeEEEecCc
Confidence 468888999996655566665554 45556677887765433332 24467889999997543
No 257
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.98 E-value=89 Score=20.56 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEE
Q 024584 69 NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFV 102 (265)
Q Consensus 69 ~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV 102 (265)
..-|.+|..+|-+.- +.++.++-+..-.+|-|||
T Consensus 29 ~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 29 RLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 344567888886554 6777666555455677776
No 258
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=21.57 E-value=79 Score=19.18 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHhhcCCCceeEEEECCCCCcee
Q 024584 67 PFNCTDIDICKFFAGLDIVDVLLVNKNGRFSG 98 (265)
Q Consensus 67 p~~~te~dL~~~F~~~giv~v~~~~~~g~~kG 98 (265)
+.+.+-.++.+.|...++..+.++|.+|+..|
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G 44 (57)
T PF00571_consen 13 SPDDSLEEALEIMRKNGISRLPVVDEDGKLVG 44 (57)
T ss_dssp ETTSBHHHHHHHHHHHTSSEEEEESTTSBEEE
T ss_pred cCcCcHHHHHHHHHHcCCcEEEEEecCCEEEE
Confidence 56688889999999888777777877765543
No 259
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=21.21 E-value=1.9e+02 Score=25.24 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=55.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC--------CCCceeEEEEEECCHHHHHH----HHHh---CC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP--------DGKATGEAYVEFVSVEEAKR----AMCK---DK 238 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~--------~g~~~G~afV~F~s~~~A~~----Al~~---~g 238 (265)
.++.|.+.||..+++-..+...|-.||.++ +|.++.+. .-+..-...+-|-+.+.+.. .|++ =+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIE-SiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIE-SIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCcee-EEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 556799999999999999999999999988 48887654 22334568899999887753 2332 34
Q ss_pred CeeCCeEEEEEeC
Q 024584 239 MTIGSRYVELFPS 251 (265)
Q Consensus 239 ~~l~gr~i~V~~~ 251 (265)
+.|....|.|...
T Consensus 93 ~~L~S~~L~lsFV 105 (309)
T PF10567_consen 93 TKLKSESLTLSFV 105 (309)
T ss_pred HhcCCcceeEEEE
Confidence 5666666666443
No 260
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.12 E-value=3.2e+02 Score=25.85 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=39.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhh----cCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFK----DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~----~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
+..+.+..-..+.+--||..+|. .+|++.. +.+...+.-+.+...++.|.+.++|..|+..
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~-atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTE-VTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEE-EEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 34455543333334457777775 4676653 6665555555567889999999999998775
No 261
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.74 E-value=2.4e+02 Score=17.89 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=29.8
Q ss_pred CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCH---HHHHHHHHhCCCe
Q 024584 188 KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSV---EEAKRAMCKDKMT 240 (265)
Q Consensus 188 t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~---~~A~~Al~~~g~~ 240 (265)
.-.+|.++|..+++....+.......+ ..+...+.++.. +.+.++|+.+|..
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREG-IGGILRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecC-CcEEEEEEECCHHHHHHHHHHHHHcCCc
Confidence 456789999999855433443332212 345667778655 4444445556543
No 262
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=49 Score=30.07 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=44.5
Q ss_pred ccEEEEcCCCCCCCHH--------HHHHhhhcCC-ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHH
Q 024584 175 TEILKMRGLPFSVKKS--------EIVQFFKDYK-IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMC 235 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~--------dL~~~F~~~g-~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~ 235 (265)
.+.+|+.+.....+.+ ++..+|.+.+ .....|....+. +...+|.-|++|.....|.+++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3456777776665554 9999999954 222235555555 67789999999999999999994
No 263
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=20.55 E-value=6.3e+02 Score=22.68 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCCCHHHHHHh----------hcCCCcee-EEEECCCCCceeEEEEEeC
Q 024584 59 PVVRLRGLPFNCTDIDICKF----------FAGLDIVD-VLLVNKNGRFSGEAFVVFA 105 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~----------F~~~giv~-v~~~~~~g~~kG~afV~F~ 105 (265)
-+|--.|||.++ |.||+.| |.+.|.|. |-+.-+.+ .-|+.|--|.
T Consensus 38 LSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~pe~-~~gcYyCL~q 93 (353)
T PF15053_consen 38 LSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIPES-RVGCYYCLLQ 93 (353)
T ss_pred eeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCCCc-ceeEEEEeee
Confidence 456669999876 4456654 55677655 33322332 2455554444
Done!