Query 024584
Match_columns 265
No_of_seqs 268 out of 1457
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.4E-37 1.2E-41 255.5 22.0 173 53-260 10-187 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 1.6E-36 5.6E-41 247.2 20.7 178 53-260 8-189 (196)
3 3md3_A Nuclear and cytoplasmic 100.0 2.8E-35 9.6E-40 233.2 19.8 161 59-253 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 3E-34 1E-38 228.0 19.7 159 57-251 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 5E-34 1.7E-38 226.2 20.3 159 57-251 1-167 (167)
6 2cjk_A Nuclear polyadenylated 100.0 3.5E-35 1.2E-39 233.3 12.5 161 57-254 2-166 (167)
7 2qfj_A FBP-interacting repress 100.0 4.6E-34 1.6E-38 236.1 18.5 174 56-254 26-205 (216)
8 1fje_B Nucleolin RBD12, protei 100.0 4.9E-35 1.7E-39 234.5 11.6 164 53-254 8-174 (175)
9 3nmr_A Cugbp ELAV-like family 100.0 1.1E-33 3.9E-38 226.0 19.4 161 57-252 2-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 1.6E-34 5.3E-39 230.7 13.7 160 56-252 2-172 (172)
11 2yh0_A Splicing factor U2AF 65 100.0 9.4E-34 3.2E-38 231.1 15.1 183 56-254 2-194 (198)
12 3smz_A Protein raver-1, ribonu 100.0 1.4E-32 4.9E-37 236.8 21.4 171 56-259 93-269 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 1.4E-31 4.8E-36 230.4 20.5 194 53-252 4-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 2.5E-32 8.5E-37 224.9 14.9 191 56-251 2-204 (205)
15 3smz_A Protein raver-1, ribonu 100.0 1.6E-31 5.5E-36 230.2 20.3 154 56-255 20-176 (284)
16 3sde_A Paraspeckle component 1 100.0 1.3E-31 4.3E-36 228.6 17.4 156 53-254 17-179 (261)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-31 6E-36 230.9 15.6 160 52-255 35-198 (292)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.6E-31 8.9E-36 229.8 14.6 169 57-254 116-291 (292)
19 2adc_A Polypyrimidine tract-bi 100.0 4.3E-31 1.5E-35 221.1 15.4 189 54-253 30-227 (229)
20 1qm9_A Polypyrimidine tract-bi 100.0 3.1E-31 1.1E-35 216.7 13.3 186 57-253 2-196 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 9.2E-24 3.1E-28 166.5 11.8 137 95-254 11-150 (158)
22 4f25_A Polyadenylate-binding p 99.9 2.6E-23 8.7E-28 155.5 8.3 109 56-191 3-113 (115)
23 2dha_A FLJ20171 protein; RRM d 99.9 9.4E-23 3.2E-27 153.9 9.8 92 174-265 22-116 (123)
24 2i2y_A Fusion protein consists 99.9 4.8E-22 1.6E-26 155.4 10.4 135 94-253 10-147 (150)
25 2db1_A Heterogeneous nuclear r 99.9 1.4E-21 4.6E-26 146.8 12.3 91 173-264 15-108 (118)
26 1wez_A HnRNP H', FTP-3, hetero 99.9 1.3E-21 4.4E-26 143.1 10.1 81 53-133 10-91 (102)
27 2hgl_A HNRPF protein, heteroge 99.9 2E-21 6.7E-26 149.2 11.3 89 173-262 42-133 (136)
28 1wel_A RNA-binding protein 12; 99.9 4.8E-21 1.6E-25 144.9 11.4 92 172-263 22-113 (124)
29 2dnn_A RNA-binding protein 12; 99.8 5.6E-21 1.9E-25 141.2 11.2 87 173-261 14-100 (109)
30 2dnn_A RNA-binding protein 12; 99.8 1.9E-21 6.3E-26 143.8 8.6 88 54-141 12-100 (109)
31 2lmi_A GRSF-1, G-rich sequence 99.8 2.2E-21 7.7E-26 143.0 9.0 92 172-264 8-102 (107)
32 2hgm_A HNRPF protein, heteroge 99.8 1.7E-21 5.7E-26 147.4 7.5 85 173-257 40-124 (126)
33 2cpy_A RNA-binding protein 12; 99.8 9E-21 3.1E-25 141.4 11.2 90 173-262 13-102 (114)
34 1wg5_A Heterogeneous nuclear r 99.8 2.5E-21 8.6E-26 142.0 7.8 87 173-259 13-99 (104)
35 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-20 4.2E-25 137.1 11.1 80 173-253 17-98 (99)
36 2hgm_A HNRPF protein, heteroge 99.8 4.9E-21 1.7E-25 144.9 7.4 85 52-136 36-123 (126)
37 2dha_A FLJ20171 protein; RRM d 99.8 1.7E-20 5.7E-25 141.5 10.1 88 56-143 21-114 (123)
38 1wez_A HnRNP H', FTP-3, hetero 99.8 7.1E-21 2.4E-25 139.1 7.1 81 173-255 13-93 (102)
39 2db1_A Heterogeneous nuclear r 99.8 9.5E-20 3.3E-24 136.6 13.2 89 53-141 12-105 (118)
40 1wg5_A Heterogeneous nuclear r 99.8 3E-20 1E-24 136.2 10.1 84 53-136 10-96 (104)
41 2hgl_A HNRPF protein, heteroge 99.8 5.6E-20 1.9E-24 141.0 11.2 87 53-139 39-130 (136)
42 4fxv_A ELAV-like protein 1; RN 99.8 4.4E-20 1.5E-24 134.1 10.1 76 57-132 18-97 (99)
43 3s8s_A Histone-lysine N-methyl 99.8 1.3E-19 4.3E-24 134.2 12.5 83 174-257 5-89 (110)
44 2cpy_A RNA-binding protein 12; 99.8 1.3E-19 4.3E-24 135.1 11.3 87 54-140 11-100 (114)
45 2lxi_A RNA-binding protein 10; 99.8 1.6E-20 5.4E-25 134.4 5.7 78 176-254 2-83 (91)
46 1wel_A RNA-binding protein 12; 99.8 2.8E-19 9.5E-24 135.2 12.8 90 53-142 20-112 (124)
47 2lkz_A RNA-binding protein 5; 99.8 6.5E-20 2.2E-24 132.1 8.2 79 174-252 8-93 (95)
48 3s8s_A Histone-lysine N-methyl 99.8 3.6E-19 1.2E-23 131.8 11.8 81 56-136 4-88 (110)
49 2hgn_A Heterogeneous nuclear r 99.8 1.1E-20 3.7E-25 145.5 3.7 82 54-135 42-124 (139)
50 2lmi_A GRSF-1, G-rich sequence 99.8 1.1E-19 3.7E-24 133.9 8.8 89 53-141 6-99 (107)
51 2dgw_A Probable RNA-binding pr 99.8 3.6E-19 1.2E-23 127.1 11.2 81 53-133 5-86 (91)
52 2cpz_A CUG triplet repeat RNA- 99.8 5.5E-19 1.9E-23 131.7 11.6 81 53-133 20-104 (115)
53 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.1E-19 2.4E-23 124.3 10.9 81 173-254 4-86 (87)
54 2do4_A Squamous cell carcinoma 99.8 9.4E-19 3.2E-23 127.1 11.8 81 173-254 15-96 (100)
55 3lqv_A PRE-mRNA branch site pr 99.8 2.2E-19 7.5E-24 133.8 8.6 105 54-202 4-110 (115)
56 3s7r_A Heterogeneous nuclear r 99.8 9.2E-19 3.2E-23 123.8 11.4 78 173-251 9-87 (87)
57 2dgw_A Probable RNA-binding pr 99.8 6.5E-19 2.2E-23 125.7 10.7 80 173-254 8-87 (91)
58 2hgn_A Heterogeneous nuclear r 99.8 1.1E-20 3.8E-25 145.4 1.5 84 173-258 44-127 (139)
59 3n9u_C Cleavage and polyadenyl 99.8 1.1E-18 3.7E-23 137.1 12.7 85 174-259 54-142 (156)
60 3md1_A Nuclear and cytoplasmic 99.8 6.2E-19 2.1E-23 123.5 10.2 78 176-254 2-81 (83)
61 1s79_A Lupus LA protein; RRM, 99.8 2.2E-19 7.7E-24 131.3 8.1 80 173-253 9-88 (103)
62 2dng_A Eukaryotic translation 99.8 9E-19 3.1E-23 127.9 11.0 82 52-133 9-92 (103)
63 3s7r_A Heterogeneous nuclear r 99.8 9.4E-19 3.2E-23 123.8 10.7 79 53-131 6-87 (87)
64 2la6_A RNA-binding protein FUS 99.8 1.8E-18 6.3E-23 125.4 12.0 80 52-131 7-98 (99)
65 2ywk_A Putative RNA-binding pr 99.8 1.3E-18 4.4E-23 125.1 11.0 79 173-252 14-93 (95)
66 2do4_A Squamous cell carcinoma 99.8 2.1E-18 7.3E-23 125.2 12.3 80 54-133 13-95 (100)
67 2cqp_A RNA-binding protein 12; 99.8 1.9E-18 6.5E-23 124.9 11.9 81 173-253 13-94 (98)
68 2lkz_A RNA-binding protein 5; 99.8 5.8E-19 2E-23 127.1 9.0 78 55-132 6-93 (95)
69 2cqc_A Arginine/serine-rich sp 99.8 2.1E-18 7.3E-23 123.9 11.9 81 171-252 11-93 (95)
70 3p5t_L Cleavage and polyadenyl 99.8 2.5E-19 8.7E-24 127.7 6.6 79 176-255 2-84 (90)
71 2ek1_A RNA-binding protein 12; 99.8 1.3E-18 4.3E-23 125.1 10.2 80 174-253 14-94 (95)
72 2cqc_A Arginine/serine-rich sp 99.8 1.7E-18 5.9E-23 124.3 10.9 81 52-132 9-93 (95)
73 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-18 6.2E-23 126.7 11.1 81 173-254 13-97 (105)
74 4f25_A Polyadenylate-binding p 99.8 5.8E-19 2E-23 131.7 8.5 78 175-254 5-83 (115)
75 2dgv_A HnRNP M, heterogeneous 99.8 1E-18 3.4E-23 124.9 9.4 81 53-133 3-85 (92)
76 2dgs_A DAZ-associated protein 99.8 1.2E-18 4.1E-23 126.3 9.9 82 173-255 8-90 (99)
77 3ulh_A THO complex subunit 4; 99.8 2.7E-18 9.1E-23 126.2 11.6 80 172-252 26-106 (107)
78 2dgs_A DAZ-associated protein 99.8 2.1E-18 7.2E-23 125.0 10.9 81 53-133 5-88 (99)
79 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-18 4.4E-23 121.8 9.3 80 175-260 7-87 (89)
80 2cq0_A Eukaryotic translation 99.8 2.8E-18 9.5E-23 125.3 11.3 82 172-254 12-95 (103)
81 2dnh_A Bruno-like 5, RNA bindi 99.8 3.8E-18 1.3E-22 124.9 12.1 80 54-133 11-96 (105)
82 1x5u_A Splicing factor 3B subu 99.8 1.5E-18 5.2E-23 127.1 9.9 82 53-134 10-95 (105)
83 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-18 4E-23 127.0 9.2 82 52-133 6-91 (102)
84 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.7E-18 5.8E-23 121.8 9.8 79 173-252 5-85 (85)
85 2ywk_A Putative RNA-binding pr 99.8 1.2E-18 4.2E-23 125.2 9.1 80 53-132 11-93 (95)
86 1whw_A Hypothetical protein ri 99.8 1.7E-18 5.9E-23 125.4 9.9 82 173-255 6-89 (99)
87 2cq3_A RNA-binding protein 9; 99.8 3.9E-18 1.3E-22 124.5 11.9 82 53-134 10-93 (103)
88 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-18 5.3E-23 122.5 9.4 79 55-133 3-85 (87)
89 2dgo_A Cytotoxic granule-assoc 99.8 3.9E-18 1.3E-22 127.0 12.0 82 172-254 12-95 (115)
90 2dhg_A TRNA selenocysteine ass 99.8 1.1E-18 3.8E-23 127.6 8.9 82 52-133 3-89 (104)
91 2d9p_A Polyadenylate-binding p 99.8 3.4E-18 1.1E-22 124.8 11.4 80 54-133 11-92 (103)
92 2do0_A HnRNP M, heterogeneous 99.8 4.2E-18 1.4E-22 126.6 12.1 80 53-132 10-92 (114)
93 2cpz_A CUG triplet repeat RNA- 99.8 3.5E-18 1.2E-22 127.3 11.6 81 173-254 23-105 (115)
94 2la6_A RNA-binding protein FUS 99.8 3.6E-18 1.2E-22 123.8 11.3 81 172-252 10-99 (99)
95 2dng_A Eukaryotic translation 99.8 3.6E-18 1.2E-22 124.7 11.3 81 172-254 12-93 (103)
96 1s79_A Lupus LA protein; RRM, 99.8 8.3E-19 2.8E-23 128.3 7.8 78 55-132 8-87 (103)
97 2cq0_A Eukaryotic translation 99.8 3.4E-18 1.2E-22 124.8 11.0 80 54-133 11-94 (103)
98 2d9p_A Polyadenylate-binding p 99.8 2.5E-18 8.7E-23 125.5 10.3 82 172-255 12-94 (103)
99 2e5h_A Zinc finger CCHC-type a 99.8 4E-18 1.4E-22 122.2 11.1 79 173-252 14-94 (94)
100 3ns6_A Eukaryotic translation 99.8 5.1E-19 1.7E-23 128.7 6.4 82 174-256 5-95 (100)
101 2cqp_A RNA-binding protein 12; 99.8 3.8E-18 1.3E-22 123.3 11.0 78 55-132 12-93 (98)
102 3ulh_A THO complex subunit 4; 99.8 2.6E-18 9E-23 126.2 10.2 80 53-132 24-106 (107)
103 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.8E-18 1.3E-22 124.5 11.0 81 53-133 10-92 (103)
104 2dnz_A Probable RNA-binding pr 99.8 2.1E-18 7.1E-23 124.0 9.3 80 174-254 4-85 (95)
105 1x5t_A Splicing factor 3B subu 99.8 1.8E-18 6.1E-23 124.6 8.9 81 174-255 4-87 (96)
106 1whw_A Hypothetical protein ri 99.8 2.3E-18 7.8E-23 124.8 9.6 81 54-134 4-88 (99)
107 2cq3_A RNA-binding protein 9; 99.8 5.6E-18 1.9E-22 123.6 11.7 82 172-255 12-94 (103)
108 2ek1_A RNA-binding protein 12; 99.8 2.2E-18 7.6E-23 123.8 9.3 78 55-132 12-93 (95)
109 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.1E-18 7.3E-23 136.7 10.1 84 173-257 70-155 (165)
110 3md1_A Nuclear and cytoplasmic 99.8 2.9E-18 1E-22 120.0 9.6 76 58-133 1-80 (83)
111 2x1f_A MRNA 3'-END-processing 99.8 2.4E-18 8.3E-23 124.0 9.4 81 175-256 2-84 (96)
112 2lea_A Serine/arginine-rich sp 99.8 3.3E-19 1.1E-23 136.8 5.1 119 99-254 6-127 (135)
113 1x5u_A Splicing factor 3B subu 99.8 2.5E-18 8.6E-23 125.9 9.6 82 173-255 13-96 (105)
114 2do0_A HnRNP M, heterogeneous 99.8 7.9E-18 2.7E-22 125.1 12.3 80 173-253 13-93 (114)
115 2lxi_A RNA-binding protein 10; 99.8 3.5E-19 1.2E-23 127.3 4.7 76 58-133 1-82 (91)
116 2wbr_A GW182, gawky, LD47780P; 99.8 2.6E-18 8.8E-23 120.3 9.0 78 56-137 5-84 (89)
117 3p5t_L Cleavage and polyadenyl 99.8 1E-18 3.6E-23 124.5 7.2 75 59-133 2-82 (90)
118 2jrs_A RNA-binding protein 39; 99.8 6.6E-18 2.2E-22 124.5 11.6 82 172-254 23-106 (108)
119 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.4E-18 8.2E-23 125.4 9.2 81 53-133 7-91 (102)
120 2e5h_A Zinc finger CCHC-type a 99.8 5.1E-18 1.7E-22 121.7 10.7 78 54-131 12-93 (94)
121 2dnz_A Probable RNA-binding pr 99.8 4.7E-18 1.6E-22 122.1 10.5 79 55-133 2-84 (95)
122 2cph_A RNA binding motif prote 99.8 4E-18 1.4E-22 125.2 10.3 81 53-133 10-96 (107)
123 2fc8_A NCL protein; structure 99.8 5.2E-18 1.8E-22 123.5 10.8 80 53-133 10-91 (102)
124 2div_A TRNA selenocysteine ass 99.8 3E-18 1E-22 124.1 9.4 81 52-132 3-92 (99)
125 2fy1_A RNA-binding motif prote 99.8 2.3E-18 7.9E-23 128.6 9.0 82 173-255 5-87 (116)
126 2fc9_A NCL protein; structure 99.8 4E-18 1.4E-22 124.0 10.1 80 53-133 10-90 (101)
127 2cqg_A TDP-43, TAR DNA-binding 99.8 7.8E-18 2.7E-22 122.9 11.3 82 172-255 12-94 (103)
128 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.6E-18 9E-23 125.1 8.8 81 173-254 10-92 (102)
129 2mss_A Protein (musashi1); RNA 99.8 1E-18 3.4E-23 120.1 6.1 74 177-251 1-75 (75)
130 2cpe_A RNA-binding protein EWS 99.8 5E-18 1.7E-22 126.0 10.4 82 173-254 13-103 (113)
131 2dnm_A SRP46 splicing factor; 99.8 2.9E-18 9.9E-23 125.2 8.9 81 53-133 8-92 (103)
132 1wi8_A EIF-4B, eukaryotic tran 99.8 3.7E-18 1.3E-22 124.8 9.4 80 54-133 11-93 (104)
133 2dhg_A TRNA selenocysteine ass 99.8 2.2E-18 7.4E-23 126.0 8.1 81 173-254 7-90 (104)
134 3ucg_A Polyadenylate-binding p 99.8 5.4E-18 1.9E-22 120.2 9.9 79 174-253 5-84 (89)
135 2dgo_A Cytotoxic granule-assoc 99.8 6.2E-18 2.1E-22 125.9 10.6 83 52-134 9-95 (115)
136 2dh8_A DAZ-associated protein 99.8 2.1E-18 7.3E-23 126.3 7.9 83 172-255 13-96 (105)
137 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.8E-18 1.3E-22 120.0 8.9 77 55-131 4-84 (85)
138 2hvz_A Splicing factor, argini 99.7 2.3E-18 7.8E-23 125.3 7.9 72 59-133 1-74 (101)
139 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.7E-22 123.4 11.6 80 53-133 17-98 (109)
140 1x4h_A RNA-binding protein 28; 99.7 5E-18 1.7E-22 125.5 9.8 81 173-254 13-101 (111)
141 2khc_A Testis-specific RNP-typ 99.7 1.1E-17 3.8E-22 125.1 11.7 79 172-251 37-117 (118)
142 2cpf_A RNA binding motif prote 99.7 4.4E-18 1.5E-22 123.0 9.1 80 174-254 4-88 (98)
143 2dnm_A SRP46 splicing factor; 99.7 2.6E-18 8.8E-23 125.5 7.9 81 173-254 11-93 (103)
144 2kt5_A RNA and export factor-b 99.7 1.9E-17 6.4E-22 125.0 12.7 81 53-133 30-113 (124)
145 1wi8_A EIF-4B, eukaryotic tran 99.7 5.5E-18 1.9E-22 123.9 9.4 80 173-254 13-94 (104)
146 2krb_A Eukaryotic translation 99.7 1.4E-18 4.7E-23 121.4 5.9 71 58-128 1-80 (81)
147 1p27_B RNA-binding protein 8A; 99.7 6E-18 2E-22 124.1 9.6 81 173-254 21-103 (106)
148 3r27_A HnRNP L, heterogeneous 99.7 4E-18 1.4E-22 123.2 8.5 78 172-255 18-98 (100)
149 2jrs_A RNA-binding protein 39; 99.7 1.2E-17 4E-22 123.2 11.1 82 52-133 20-105 (108)
150 2dgv_A HnRNP M, heterogeneous 99.7 6.6E-18 2.3E-22 120.6 9.5 80 173-254 6-86 (92)
151 2div_A TRNA selenocysteine ass 99.7 7.5E-18 2.6E-22 122.0 9.8 81 173-253 7-93 (99)
152 1x5s_A Cold-inducible RNA-bind 99.7 2.5E-18 8.4E-23 125.3 7.2 81 173-254 10-92 (102)
153 2fy1_A RNA-binding motif prote 99.7 6.1E-18 2.1E-22 126.3 9.5 80 55-134 4-86 (116)
154 1p1t_A Cleavage stimulation fa 99.7 2.3E-18 8E-23 125.8 7.1 85 174-259 7-93 (104)
155 2kxn_B Transformer-2 protein h 99.7 5.4E-18 1.8E-22 129.0 9.3 82 52-133 40-125 (129)
156 1x5t_A Splicing factor 3B subu 99.7 4.6E-18 1.6E-22 122.4 8.4 78 56-133 3-85 (96)
157 1p27_B RNA-binding protein 8A; 99.7 7.4E-18 2.5E-22 123.6 9.6 79 55-133 20-102 (106)
158 2cq4_A RNA binding motif prote 99.7 7.3E-18 2.5E-22 125.3 9.6 83 173-256 23-106 (114)
159 2fc9_A NCL protein; structure 99.7 9.6E-18 3.3E-22 121.9 10.0 78 173-254 13-91 (101)
160 2cpe_A RNA-binding protein EWS 99.7 8.7E-18 3E-22 124.7 9.9 80 54-133 11-102 (113)
161 1sjq_A Polypyrimidine tract-bi 99.7 2.2E-18 7.4E-23 125.8 6.4 78 173-256 14-94 (105)
162 2err_A Ataxin-2-binding protei 99.7 5.3E-18 1.8E-22 125.2 8.6 81 53-133 24-106 (109)
163 2cqg_A TDP-43, TAR DNA-binding 99.7 1.9E-17 6.6E-22 120.8 11.6 81 53-134 10-93 (103)
164 2cqd_A RNA-binding region cont 99.7 1.5E-17 5.2E-22 124.0 11.2 81 172-254 14-96 (116)
165 2mss_A Protein (musashi1); RNA 99.7 3.4E-18 1.2E-22 117.4 7.0 72 60-131 1-75 (75)
166 1x4h_A RNA-binding protein 28; 99.7 1.3E-17 4.6E-22 123.2 10.7 81 53-133 10-100 (111)
167 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-17 5.7E-22 121.1 11.1 80 173-254 13-93 (103)
168 2dgx_A KIAA0430 protein; RRM d 99.7 9.5E-18 3.2E-22 121.0 9.5 79 173-254 7-90 (96)
169 2kt5_A RNA and export factor-b 99.7 3.3E-17 1.1E-21 123.7 12.9 83 171-254 31-114 (124)
170 2rs2_A Musashi-1, RNA-binding 99.7 5.8E-18 2E-22 125.0 8.5 82 172-254 22-104 (109)
171 2err_A Ataxin-2-binding protei 99.7 4.4E-18 1.5E-22 125.7 7.8 81 172-254 26-107 (109)
172 1oo0_B CG8781-PA, drosophila Y 99.7 8.4E-18 2.9E-22 124.2 9.2 81 173-254 24-106 (110)
173 3ns6_A Eukaryotic translation 99.7 2.6E-18 9E-23 124.9 6.4 80 56-135 4-94 (100)
174 2x1f_A MRNA 3'-END-processing 99.7 8.3E-18 2.9E-22 121.2 9.0 79 57-135 1-83 (96)
175 3q2s_C Cleavage and polyadenyl 99.7 1E-17 3.6E-22 139.7 10.9 85 174-259 67-155 (229)
176 3r27_A HnRNP L, heterogeneous 99.7 7.2E-18 2.5E-22 121.8 8.5 76 55-134 18-97 (100)
177 3n9u_C Cleavage and polyadenyl 99.7 1.3E-17 4.5E-22 131.0 10.7 80 57-136 54-139 (156)
178 1x4c_A Splicing factor, argini 99.7 1.6E-17 5.5E-22 122.4 10.5 77 52-133 9-92 (108)
179 2dgx_A KIAA0430 protein; RRM d 99.7 7.6E-18 2.6E-22 121.5 8.5 79 52-132 3-88 (96)
180 1sjq_A Polypyrimidine tract-bi 99.7 3.9E-18 1.3E-22 124.4 7.0 76 55-134 13-92 (105)
181 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.4E-18 8.2E-23 125.1 5.8 81 53-133 14-97 (100)
182 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.7E-18 5.8E-23 125.9 5.0 80 173-254 17-98 (100)
183 2cqd_A RNA-binding region cont 99.7 2E-17 6.9E-22 123.3 11.0 80 53-133 12-95 (116)
184 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-17 5.5E-22 127.8 10.7 83 171-254 38-122 (139)
185 2kxn_B Transformer-2 protein h 99.7 5.1E-18 1.7E-22 129.1 7.8 81 172-253 43-125 (129)
186 2cq1_A PTB-like protein L; RRM 99.7 2.2E-17 7.6E-22 120.1 10.7 76 55-134 12-91 (101)
187 2dgp_A Bruno-like 4, RNA bindi 99.7 7E-18 2.4E-22 123.7 8.2 81 173-254 11-96 (106)
188 3ucg_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 118.5 9.0 77 57-133 5-84 (89)
189 1fj7_A Nucleolin RBD1, protein 99.7 1E-18 3.4E-23 127.2 3.5 79 55-133 14-94 (101)
190 2nlw_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 124.4 7.4 77 56-132 13-98 (105)
191 1x4b_A Heterogeneous nuclear r 99.7 8.5E-18 2.9E-22 125.4 8.6 82 173-255 25-107 (116)
192 2dh8_A DAZ-associated protein 99.7 9.8E-18 3.3E-22 122.8 8.7 80 54-133 12-94 (105)
193 2cpf_A RNA binding motif prote 99.7 1E-17 3.5E-22 121.1 8.6 78 56-133 3-87 (98)
194 2cph_A RNA binding motif prote 99.7 1.3E-17 4.5E-22 122.4 9.3 81 173-254 13-97 (107)
195 1x4e_A RNA binding motif, sing 99.7 4.2E-18 1.4E-22 119.9 6.4 76 55-130 2-81 (85)
196 2khc_A Testis-specific RNP-typ 99.7 2E-17 6.8E-22 123.7 10.3 80 52-131 34-117 (118)
197 1iqt_A AUF1, heterogeneous nuc 99.7 1.7E-18 5.9E-23 118.9 4.1 74 177-251 1-75 (75)
198 4a8x_A RNA-binding protein wit 99.7 8.9E-18 3.1E-22 118.8 7.9 79 174-253 3-84 (88)
199 2m2b_A RNA-binding protein 10; 99.7 5E-18 1.7E-22 129.5 7.0 81 173-254 21-108 (131)
200 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.4E-18 1.5E-22 117.4 6.0 74 176-251 1-76 (77)
201 2cpi_A CCR4-NOT transcription 99.7 1.9E-17 6.6E-22 122.6 9.5 81 54-134 11-101 (111)
202 1x4e_A RNA binding motif, sing 99.7 3.2E-18 1.1E-22 120.5 5.0 78 174-252 4-83 (85)
203 1p1t_A Cleavage stimulation fa 99.7 8.7E-18 3E-22 122.7 7.5 81 56-136 6-90 (104)
204 1x4a_A Splicing factor, argini 99.7 5.1E-17 1.7E-21 119.8 11.7 80 172-254 19-99 (109)
205 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-17 4.3E-22 122.4 8.3 80 54-133 9-95 (106)
206 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.6E-22 123.3 8.4 78 173-254 26-105 (111)
207 2fc8_A NCL protein; structure 99.7 3.6E-17 1.2E-21 119.0 10.6 78 173-254 13-92 (102)
208 2a3j_A U1 small nuclear ribonu 99.7 1.6E-17 5.5E-22 125.9 9.0 80 54-134 25-110 (127)
209 2cq1_A PTB-like protein L; RRM 99.7 1.7E-17 5.7E-22 120.8 8.7 78 173-256 13-93 (101)
210 3pgw_S U1-70K; protein-RNA com 99.7 2.5E-18 8.6E-23 156.2 5.4 82 173-255 100-183 (437)
211 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.8E-17 1.3E-21 128.2 11.4 81 172-253 36-118 (156)
212 1x5o_A RNA binding motif, sing 99.7 5.5E-17 1.9E-21 120.5 11.7 80 173-253 23-111 (114)
213 1wex_A Hypothetical protein (r 99.7 2.8E-17 9.6E-22 120.2 9.9 76 55-134 12-91 (104)
214 2f3j_A RNA and export factor b 99.7 6.2E-17 2.1E-21 129.7 12.7 82 53-134 83-167 (177)
215 2cpi_A CCR4-NOT transcription 99.7 1.8E-17 6.2E-22 122.7 8.8 81 173-254 13-101 (111)
216 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-17 4.1E-22 123.6 7.5 78 54-133 24-104 (111)
217 1oo0_B CG8781-PA, drosophila Y 99.7 1.6E-17 5.3E-22 122.7 8.2 80 54-133 22-105 (110)
218 1x4c_A Splicing factor, argini 99.7 7.8E-18 2.7E-22 124.1 6.4 76 173-255 13-94 (108)
219 2dnq_A RNA-binding protein 4B; 99.7 2.9E-17 9.9E-22 116.9 9.1 75 53-133 3-79 (90)
220 2jwn_A Embryonic polyadenylate 99.7 2.9E-17 1E-21 123.9 9.6 79 174-253 35-114 (124)
221 2krb_A Eukaryotic translation 99.7 6.4E-18 2.2E-22 117.9 5.5 71 176-248 2-80 (81)
222 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.7E-17 2E-21 124.6 11.3 80 171-251 59-140 (140)
223 2nlw_A Eukaryotic translation 99.7 1.7E-17 5.9E-22 121.6 8.0 78 174-253 14-99 (105)
224 1u6f_A Tcubp1, RNA-binding pro 99.7 3.4E-17 1.2E-21 126.0 10.0 81 53-133 37-121 (139)
225 3ex7_B RNA-binding protein 8A; 99.7 1.5E-17 5.2E-22 125.8 7.8 81 173-254 20-102 (126)
226 1x5o_A RNA binding motif, sing 99.7 6.6E-17 2.3E-21 120.1 11.1 78 55-132 22-110 (114)
227 2ad9_A Polypyrimidine tract-bi 99.7 1.5E-17 5.1E-22 124.2 7.4 78 173-256 29-109 (119)
228 2ytc_A PRE-mRNA-splicing facto 99.7 4.7E-17 1.6E-21 114.4 9.6 76 52-131 6-84 (85)
229 2xs2_A Deleted in azoospermia- 99.7 1.4E-17 4.9E-22 121.2 7.1 80 173-254 7-86 (102)
230 2ad9_A Polypyrimidine tract-bi 99.7 2.5E-17 8.7E-22 123.0 8.4 77 54-134 27-107 (119)
231 2e5j_A Methenyltetrahydrofolat 99.7 3.3E-17 1.1E-21 118.3 8.8 78 54-133 15-93 (97)
232 2cq4_A RNA binding motif prote 99.7 2.9E-17 9.8E-22 122.1 8.6 80 56-135 23-105 (114)
233 3ex7_B RNA-binding protein 8A; 99.7 2.5E-17 8.6E-22 124.6 8.4 80 54-133 18-101 (126)
234 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.7E-17 1.6E-21 125.1 10.1 79 52-130 57-139 (140)
235 2m2b_A RNA-binding protein 10; 99.7 1.3E-17 4.5E-22 127.2 6.8 78 55-133 20-107 (131)
236 1x4f_A Matrin 3; structural ge 99.7 4.3E-17 1.5E-21 120.4 9.3 75 55-133 22-101 (112)
237 2cpj_A Non-POU domain-containi 99.7 7.7E-17 2.6E-21 116.7 10.3 76 54-133 11-88 (99)
238 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.9E-17 6.6E-22 114.1 6.8 72 59-131 1-76 (77)
239 2ki2_A SS-DNA binding protein 99.7 6.9E-18 2.4E-22 120.0 4.5 79 176-256 2-82 (90)
240 1x4d_A Matrin 3; structural ge 99.7 3.2E-17 1.1E-21 119.3 8.1 75 55-133 12-91 (102)
241 2rs2_A Musashi-1, RNA-binding 99.7 3.5E-17 1.2E-21 120.8 8.4 80 54-133 21-103 (109)
242 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.1E-22 127.6 6.5 82 52-133 41-126 (135)
243 1fjc_A Nucleolin RBD2, protein 99.7 2.1E-17 7.3E-22 118.9 7.0 78 54-133 12-90 (96)
244 1fj7_A Nucleolin RBD1, protein 99.7 2.9E-18 9.7E-23 124.8 2.4 81 173-254 15-95 (101)
245 1iqt_A AUF1, heterogeneous nuc 99.7 8.8E-18 3E-22 115.3 4.7 71 60-130 1-74 (75)
246 4a8x_A RNA-binding protein wit 99.7 3.2E-17 1.1E-21 115.9 7.7 77 56-132 2-83 (88)
247 2dgt_A RNA-binding protein 30; 99.7 8E-17 2.7E-21 115.0 9.6 75 53-133 5-81 (92)
248 1x4b_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 121.5 8.6 79 55-133 24-105 (116)
249 2cpx_A Hypothetical protein FL 99.7 3.8E-17 1.3E-21 121.5 8.2 79 55-133 22-104 (115)
250 2dis_A Unnamed protein product 99.7 3.6E-17 1.2E-21 120.5 7.8 81 174-255 7-93 (109)
251 1why_A Hypothetical protein ri 99.7 1.4E-16 4.7E-21 114.9 10.7 75 55-133 14-92 (97)
252 1nu4_A U1A RNA binding domain; 99.7 2E-17 6.8E-22 119.3 5.9 81 53-134 3-89 (97)
253 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.6E-21 125.7 10.6 80 54-133 35-118 (156)
254 1x4d_A Matrin 3; structural ge 99.7 4.5E-17 1.5E-21 118.5 7.7 75 173-253 13-91 (102)
255 2cpx_A Hypothetical protein FL 99.7 4.4E-17 1.5E-21 121.2 7.8 82 173-254 23-105 (115)
256 1fjc_A Nucleolin RBD2, protein 99.7 4.3E-17 1.5E-21 117.3 7.3 77 173-254 14-91 (96)
257 2la4_A Nuclear and cytoplasmic 99.7 5.4E-17 1.9E-21 117.9 7.8 74 55-132 24-99 (101)
258 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-16 4.7E-21 118.6 10.1 80 173-255 6-86 (115)
259 2dgu_A Heterogeneous nuclear r 99.7 8E-17 2.7E-21 117.5 8.6 74 54-133 7-82 (103)
260 1wex_A Hypothetical protein (r 99.7 6.2E-17 2.1E-21 118.4 7.9 77 173-255 13-92 (104)
261 2xs2_A Deleted in azoospermia- 99.7 1.9E-17 6.4E-22 120.6 5.1 79 55-134 6-86 (102)
262 2xnq_A Nuclear polyadenylated 99.7 1E-16 3.6E-21 115.7 9.0 75 52-132 16-93 (97)
263 2a3j_A U1 small nuclear ribonu 99.7 6.3E-17 2.2E-21 122.6 8.1 80 173-255 27-111 (127)
264 2e5j_A Methenyltetrahydrofolat 99.7 9.8E-17 3.3E-21 115.8 8.8 77 173-254 17-94 (97)
265 2dnp_A RNA-binding protein 14; 99.7 6.9E-17 2.4E-21 114.9 7.8 75 53-133 4-80 (90)
266 3q2s_C Cleavage and polyadenyl 99.7 8.8E-17 3E-21 134.1 9.6 81 57-137 67-153 (229)
267 2jwn_A Embryonic polyadenylate 99.7 7.4E-17 2.5E-21 121.6 8.3 76 57-132 35-113 (124)
268 1wg1_A KIAA1579 protein, homol 99.7 1E-16 3.5E-21 113.6 8.5 74 56-133 3-77 (88)
269 2dnq_A RNA-binding protein 4B; 99.7 1E-16 3.5E-21 114.0 8.4 74 173-254 6-80 (90)
270 2cqh_A IGF-II mRNA-binding pro 99.7 4.2E-17 1.5E-21 116.7 6.3 76 54-133 4-82 (93)
271 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.8E-21 126.2 9.8 81 54-134 68-152 (165)
272 3egn_A RNA-binding protein 40; 99.7 8.4E-17 2.9E-21 124.4 8.1 81 173-253 43-129 (143)
273 3egn_A RNA-binding protein 40; 99.7 5E-17 1.7E-21 125.7 6.8 79 55-133 42-129 (143)
274 1whx_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 120.7 6.2 76 55-134 7-84 (111)
275 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4E-21 117.8 8.4 76 171-254 27-103 (108)
276 1why_A Hypothetical protein ri 99.7 1.8E-16 6.2E-21 114.3 9.1 76 173-254 15-93 (97)
277 2la4_A Nuclear and cytoplasmic 99.7 8.5E-17 2.9E-21 116.9 7.4 75 173-253 25-100 (101)
278 2cqh_A IGF-II mRNA-binding pro 99.7 7.8E-17 2.7E-21 115.3 7.1 76 173-254 6-83 (93)
279 2xnq_A Nuclear polyadenylated 99.7 2.3E-16 7.9E-21 113.9 9.6 74 172-253 19-94 (97)
280 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-16 5.3E-21 117.1 8.8 75 53-133 26-102 (108)
281 2kn4_A Immunoglobulin G-bindin 99.7 1.1E-16 3.6E-21 125.8 8.4 80 54-133 66-149 (158)
282 2cpj_A Non-POU domain-containi 99.7 1.2E-16 4.2E-21 115.6 8.0 77 172-254 12-89 (99)
283 1nu4_A U1A RNA binding domain; 99.7 3.3E-17 1.1E-21 118.1 4.8 80 173-255 6-90 (97)
284 2f3j_A RNA and export factor b 99.7 1.1E-16 3.8E-21 128.2 8.3 82 172-254 85-167 (177)
285 1l3k_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 126.7 11.2 83 172-255 10-93 (196)
286 2dgt_A RNA-binding protein 30; 99.7 3.9E-16 1.3E-20 111.4 10.2 75 172-254 7-82 (92)
287 2cpd_A Apobec-1 stimulating pr 99.7 4.2E-16 1.4E-20 112.8 10.4 76 171-254 11-89 (99)
288 2e5g_A U6 snRNA-specific termi 99.7 1.8E-16 6.3E-21 113.6 8.5 75 54-132 4-80 (94)
289 1x4f_A Matrin 3; structural ge 99.7 9.8E-17 3.4E-21 118.5 6.8 77 172-254 22-102 (112)
290 2dgu_A Heterogeneous nuclear r 99.7 2.4E-16 8.4E-21 114.9 8.9 75 173-255 9-84 (103)
291 4f02_A Polyadenylate-binding p 99.7 3.7E-16 1.3E-20 128.8 11.0 82 173-255 13-96 (213)
292 1x4g_A Nucleolysin TIAR; struc 99.7 2E-16 6.9E-21 116.6 8.4 76 173-254 23-99 (109)
293 2ki2_A SS-DNA binding protein 99.7 4E-17 1.4E-21 116.1 4.3 75 59-134 2-80 (90)
294 2ytc_A PRE-mRNA-splicing facto 99.7 5.1E-16 1.7E-20 109.0 9.9 74 173-252 10-85 (85)
295 2kvi_A Nuclear polyadenylated 99.7 1.5E-16 5.2E-21 114.5 7.3 74 54-133 6-82 (96)
296 2j8a_A Histone-lysine N-methyl 99.7 3.9E-16 1.3E-20 116.4 9.4 80 176-256 3-98 (136)
297 1wg1_A KIAA1579 protein, homol 99.7 3.6E-16 1.2E-20 110.7 8.6 73 174-253 4-77 (88)
298 1fxl_A Paraneoplastic encephal 99.7 7E-16 2.4E-20 121.3 11.2 79 175-254 2-82 (167)
299 2hvz_A Splicing factor, argini 99.7 9.1E-17 3.1E-21 116.7 5.6 75 176-255 1-76 (101)
300 2cpd_A Apobec-1 stimulating pr 99.7 8.3E-16 2.8E-20 111.2 10.6 73 55-133 12-88 (99)
301 2dnl_A Cytoplasmic polyadenyla 99.7 3.2E-16 1.1E-20 116.5 8.6 73 55-129 5-83 (114)
302 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-16 9.2E-21 115.9 8.1 75 55-133 22-98 (109)
303 2dis_A Unnamed protein product 99.7 2.6E-16 9E-21 115.8 7.9 79 55-133 5-91 (109)
304 2lcw_A RNA-binding protein FUS 99.5 9.3E-18 3.2E-22 125.2 0.0 83 173-255 5-96 (116)
305 2dnp_A RNA-binding protein 14; 99.6 4.3E-16 1.5E-20 110.8 8.6 74 173-254 7-81 (90)
306 2diu_A KIAA0430 protein; struc 99.6 4.3E-16 1.5E-20 110.0 8.2 69 56-132 6-82 (96)
307 1wf1_A RNA-binding protein RAL 99.6 3.6E-16 1.2E-20 115.4 8.2 72 55-132 24-98 (110)
308 3beg_B Splicing factor, argini 99.6 2.2E-16 7.6E-21 117.6 6.9 73 55-132 13-92 (115)
309 2voo_A Lupus LA protein; RNA-b 99.6 9.8E-16 3.3E-20 124.4 11.2 79 174-253 108-186 (193)
310 3d2w_A TAR DNA-binding protein 99.6 5.4E-16 1.9E-20 110.2 8.6 77 173-255 9-85 (89)
311 1wf1_A RNA-binding protein RAL 99.6 7.2E-16 2.5E-20 113.8 9.4 73 173-253 25-99 (110)
312 2e5g_A U6 snRNA-specific termi 99.6 6.9E-16 2.4E-20 110.6 8.6 77 174-255 7-83 (94)
313 1whx_A Hypothetical protein ri 99.6 3E-16 1E-20 116.1 6.8 74 174-253 9-83 (111)
314 3md3_A Nuclear and cytoplasmic 99.6 7.3E-16 2.5E-20 121.0 9.3 77 176-253 1-78 (166)
315 1b7f_A Protein (SXL-lethal pro 99.6 5.5E-16 1.9E-20 122.2 8.6 80 174-254 2-83 (168)
316 2lcw_A RNA-binding protein FUS 99.4 1.8E-17 6.3E-22 123.6 0.0 80 55-134 4-95 (116)
317 2pe8_A Splicing factor 45; RRM 99.6 2.8E-15 9.5E-20 109.8 11.6 84 173-257 6-97 (105)
318 2e44_A Insulin-like growth fac 99.6 8.6E-16 3E-20 110.4 8.6 79 53-134 10-92 (96)
319 2i2y_A Fusion protein consists 99.6 6.7E-16 2.3E-20 120.3 8.7 78 53-133 68-147 (150)
320 3d2w_A TAR DNA-binding protein 99.6 6.3E-16 2.1E-20 109.8 7.4 75 54-134 7-84 (89)
321 3beg_B Splicing factor, argini 99.6 1.2E-16 4.2E-21 119.0 3.9 75 174-255 15-95 (115)
322 1x5p_A Negative elongation fac 99.6 2.1E-15 7.1E-20 108.7 10.1 74 54-133 11-86 (97)
323 2kvi_A Nuclear polyadenylated 99.6 3.2E-16 1.1E-20 112.8 5.7 74 173-254 8-83 (96)
324 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.5E-20 107.3 8.2 72 173-250 4-86 (87)
325 1sjr_A Polypyrimidine tract-bi 99.6 1.7E-15 5.9E-20 118.8 9.5 79 173-255 44-125 (164)
326 2hzc_A Splicing factor U2AF 65 99.6 7E-16 2.4E-20 108.7 6.4 72 55-130 3-86 (87)
327 2e44_A Insulin-like growth fac 99.6 7.7E-16 2.6E-20 110.7 6.7 79 173-255 13-93 (96)
328 2e5i_A Heterogeneous nuclear r 99.6 5.4E-15 1.8E-19 111.2 11.1 73 58-134 25-102 (124)
329 3zzy_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 112.7 10.2 78 173-255 26-107 (130)
330 2g4b_A Splicing factor U2AF 65 99.6 2.7E-15 9.3E-20 118.7 10.0 77 55-131 91-171 (172)
331 1x5p_A Negative elongation fac 99.6 4.5E-15 1.5E-19 107.0 10.0 74 173-254 13-87 (97)
332 2cq2_A Hypothetical protein LO 99.6 6.5E-16 2.2E-20 114.2 5.6 74 56-133 23-105 (114)
333 2e5i_A Heterogeneous nuclear r 99.6 6.5E-15 2.2E-19 110.7 11.2 77 173-255 23-103 (124)
334 2voo_A Lupus LA protein; RNA-b 99.6 3.2E-15 1.1E-19 121.4 10.1 75 58-132 109-185 (193)
335 1sjr_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 118.3 8.4 78 55-134 43-124 (164)
336 1fje_B Nucleolin RBD12, protei 99.6 2.2E-15 7.5E-20 119.8 8.5 78 54-133 95-173 (175)
337 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.4E-20 113.2 6.6 61 174-236 7-71 (114)
338 2qfj_A FBP-interacting repress 99.6 5.9E-15 2E-19 121.0 10.6 78 56-133 123-204 (216)
339 2cjk_A Nuclear polyadenylated 99.6 1.6E-15 5.6E-20 119.4 6.8 78 56-133 85-165 (167)
340 3nmr_A Cugbp ELAV-like family 99.6 5.2E-15 1.8E-19 117.2 9.8 77 55-131 92-174 (175)
341 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.3E-20 111.5 6.9 74 173-252 23-104 (114)
342 3pgw_S U1-70K; protein-RNA com 99.6 3.6E-15 1.2E-19 135.4 9.6 80 55-134 99-182 (437)
343 1wf0_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.5E-20 107.8 4.9 75 174-254 4-78 (88)
344 2yh0_A Splicing factor U2AF 65 99.6 6.7E-15 2.3E-19 119.1 9.6 79 55-133 111-193 (198)
345 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-15 6.9E-20 106.8 5.6 74 56-133 3-77 (88)
346 2j8a_A Histone-lysine N-methyl 99.6 4.7E-15 1.6E-19 110.6 7.4 75 59-133 3-95 (136)
347 2bz2_A Negative elongation fac 99.6 1E-14 3.5E-19 109.6 9.1 75 54-134 35-111 (121)
348 3zzy_A Polypyrimidine tract-bi 99.6 7.5E-15 2.5E-19 111.0 8.3 77 55-134 25-106 (130)
349 2diu_A KIAA0430 protein; struc 99.6 7.1E-15 2.4E-19 103.8 7.5 68 176-253 10-83 (96)
350 3tyt_A Heterogeneous nuclear r 99.6 9.2E-15 3.2E-19 119.8 9.2 75 174-253 3-79 (205)
351 2dit_A HIV TAT specific factor 99.6 2E-14 6.7E-19 106.4 10.1 79 53-133 10-101 (112)
352 2pe8_A Splicing factor 45; RRM 99.5 2.4E-14 8.2E-19 104.7 9.6 82 56-137 6-97 (105)
353 2bz2_A Negative elongation fac 99.5 1.4E-14 4.8E-19 108.8 8.1 75 173-255 37-112 (121)
354 3pgw_A U1-A; protein-RNA compl 99.5 2.6E-14 8.7E-19 122.4 10.5 79 173-254 7-90 (282)
355 3v4m_A Splicing factor U2AF 65 99.5 3.4E-14 1.1E-18 104.0 8.6 83 174-257 4-100 (105)
356 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.7E-18 102.4 9.9 78 173-254 13-102 (112)
357 1jmt_A Splicing factor U2AF 35 99.5 1.2E-14 4E-19 106.3 4.3 72 180-252 20-104 (104)
358 3u1l_A PRE-mRNA-splicing facto 99.5 5.3E-14 1.8E-18 117.3 7.9 76 55-134 131-229 (240)
359 2adc_A Polypyrimidine tract-bi 99.5 5.8E-14 2E-18 116.8 7.8 76 173-253 32-109 (229)
360 3ue2_A Poly(U)-binding-splicin 99.5 1.7E-13 5.9E-18 102.2 9.4 83 174-257 19-112 (118)
361 3u1l_A PRE-mRNA-splicing facto 99.5 6.9E-14 2.3E-18 116.6 7.3 78 173-256 132-231 (240)
362 3sde_A Paraspeckle component 1 99.5 1.9E-13 6.4E-18 116.0 9.8 75 172-252 19-94 (261)
363 1qm9_A Polypyrimidine tract-bi 99.4 7.8E-14 2.7E-18 113.1 5.9 74 175-253 3-78 (198)
364 3v4m_A Splicing factor U2AF 65 99.4 4.4E-13 1.5E-17 98.0 7.4 82 56-137 3-100 (105)
365 1jmt_A Splicing factor U2AF 35 99.4 8.1E-14 2.8E-18 101.8 2.9 69 63-131 20-103 (104)
366 3s6e_A RNA-binding protein 39; 99.4 2.2E-12 7.7E-17 95.5 10.1 86 173-262 5-101 (114)
367 3ue2_A Poly(U)-binding-splicin 99.4 2.7E-12 9.2E-17 95.7 8.9 80 57-136 19-111 (118)
368 3s6e_A RNA-binding protein 39; 99.4 7.9E-12 2.7E-16 92.5 11.3 86 55-142 4-101 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.1E-11 3.7E-16 89.6 10.4 71 58-132 10-88 (100)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 6.7E-12 2.3E-16 90.7 9.3 74 175-254 10-90 (100)
371 3tht_A Alkylated DNA repair pr 99.3 7.3E-12 2.5E-16 109.7 8.1 74 172-251 15-96 (345)
372 3tht_A Alkylated DNA repair pr 99.3 9.8E-12 3.4E-16 108.9 8.3 73 55-131 15-96 (345)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 4.1E-15 86.5 10.0 83 171-259 14-101 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 6.5E-10 2.2E-14 77.7 8.5 72 174-253 6-85 (91)
375 1owx_A Lupus LA protein, SS-B, 98.9 7.9E-09 2.7E-13 76.7 10.6 78 52-133 12-95 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.9 3.1E-09 1.1E-13 74.2 7.7 72 56-133 5-85 (91)
377 3dxb_A Thioredoxin N-terminall 98.9 7.6E-09 2.6E-13 85.2 10.4 82 175-257 124-216 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 1.9E-09 6.6E-14 75.7 4.7 73 173-253 13-94 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 7.7E-09 2.6E-13 72.6 5.9 70 56-131 13-92 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.8 6.5E-08 2.2E-12 69.3 9.5 80 173-260 19-104 (117)
381 3dxb_A Thioredoxin N-terminall 98.7 4.7E-08 1.6E-12 80.4 8.9 80 58-137 124-216 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.5 7.4E-07 2.5E-11 63.3 9.8 71 56-132 6-82 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.3 5.5E-06 1.9E-10 59.4 8.8 73 56-132 19-98 (117)
384 1whv_A Poly(A)-specific ribonu 98.1 1.6E-05 5.6E-10 55.7 7.8 57 53-115 11-67 (100)
385 2dhx_A Poly (ADP-ribose) polym 98.0 1.7E-05 5.9E-10 56.3 7.6 72 174-253 7-83 (104)
386 3p3d_A Nucleoporin 53; structu 98.0 7.5E-06 2.6E-10 60.8 4.8 86 175-261 7-106 (132)
387 1wwh_A Nucleoporin 35, nucleop 97.8 0.00014 4.7E-09 53.3 9.0 80 173-259 22-103 (119)
388 1wwh_A Nucleoporin 35, nucleop 97.6 0.00018 6E-09 52.7 6.9 79 55-138 21-101 (119)
389 3ctr_A Poly(A)-specific ribonu 97.6 8.8E-05 3E-09 52.2 4.7 52 58-115 6-57 (101)
390 1whv_A Poly(A)-specific ribonu 97.5 0.00034 1.1E-08 49.1 7.5 55 173-236 14-68 (100)
391 3ctr_A Poly(A)-specific ribonu 97.2 0.00036 1.2E-08 49.1 3.9 54 174-236 5-58 (101)
392 3p3d_A Nucleoporin 53; structu 97.1 0.00073 2.5E-08 50.1 5.2 80 56-136 5-101 (132)
393 1uw4_A UPF3X; nonsense mediate 97.0 0.0038 1.3E-07 43.5 8.0 66 176-242 2-71 (91)
394 1wey_A Calcipressin 1; structu 97.0 0.0011 3.7E-08 47.2 5.2 73 174-252 4-82 (104)
395 1uw4_A UPF3X; nonsense mediate 96.8 0.0057 1.9E-07 42.6 7.7 64 59-122 2-71 (91)
396 1wey_A Calcipressin 1; structu 96.6 0.0041 1.4E-07 44.2 5.6 71 58-132 5-82 (104)
397 3pq1_A Poly(A) RNA polymerase; 95.6 0.0082 2.8E-07 54.3 4.0 60 58-121 53-113 (464)
398 2l08_A Regulator of nonsense t 95.5 0.018 6.1E-07 40.4 4.7 64 58-121 9-78 (97)
399 2l08_A Regulator of nonsense t 95.4 0.016 5.6E-07 40.6 4.1 65 174-242 8-79 (97)
400 3d45_A Poly(A)-specific ribonu 94.8 0.089 3E-06 48.2 8.3 54 56-115 438-491 (507)
401 3pq1_A Poly(A) RNA polymerase; 94.1 0.036 1.2E-06 50.1 3.9 63 175-243 53-115 (464)
402 3d45_A Poly(A)-specific ribonu 90.4 0.89 3E-05 41.6 8.3 55 173-236 438-492 (507)
403 4e8u_A Putative uncharacterize 85.5 2.1 7.2E-05 33.0 6.3 50 174-226 11-71 (172)
404 4eyt_A Telomerase associated p 73.0 19 0.00066 24.4 8.3 56 54-115 8-64 (129)
405 4e8u_A Putative uncharacterize 71.1 9 0.00031 29.5 5.8 56 60-116 14-82 (172)
406 2hiy_A Hypothetical protein; C 55.4 23 0.00079 27.4 5.6 129 58-224 6-143 (183)
407 2kpo_A Rossmann 2X2 fold prote 53.7 39 0.0013 22.3 5.6 60 187-260 33-93 (110)
408 2v94_A RPS24, 30S ribosomal pr 46.2 32 0.0011 24.2 4.6 48 185-233 37-89 (107)
409 1xn9_A 30S ribosomal protein S 45.3 26 0.0009 24.3 4.0 50 185-235 28-82 (101)
410 2xzm_P RPS24E; ribosome, trans 38.5 56 0.0019 24.3 5.1 48 185-233 31-83 (149)
411 2g0c_A ATP-dependent RNA helic 38.5 72 0.0025 20.2 5.3 63 185-252 11-75 (76)
412 1ywx_A 30S ribosomal protein S 37.7 60 0.002 22.5 4.9 47 185-232 28-79 (102)
413 3u5c_Y RP50, 40S ribosomal pro 35.9 58 0.002 23.9 4.8 48 185-233 33-85 (135)
414 1vd2_A Protein kinase C, IOTA 35.1 1E+02 0.0035 20.7 6.2 68 178-250 17-88 (89)
415 2g1d_A 30S ribosomal protein S 34.6 29 0.00099 24.0 2.8 48 185-233 29-81 (98)
416 4bby_A Alkyldihydroxyacetoneph 22.5 78 0.0027 29.6 4.3 55 181-236 349-407 (658)
417 3lpe_A Putative transcription 21.0 1.9E+02 0.0065 19.2 6.5 39 216-260 49-90 (92)
418 3fut_A Dimethyladenosine trans 20.5 74 0.0025 26.1 3.4 23 176-198 111-133 (271)
419 3j21_T 50S ribosomal protein L 20.3 2E+02 0.0068 19.1 5.3 51 182-234 29-80 (86)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.4e-37 Score=255.47 Aligned_cols=173 Identities=20% Similarity=0.282 Sum_probs=144.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
.+..+.++|||+|||+++||++|+++|+.|| |+.|.+ .+. +|+++|||||+|.+.++|++||+ +|+..+.++.|.+
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 3456788999999999999999999999999 666755 454 79999999999999999999998 9999999999999
Q ss_pred eecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEE
Q 024584 129 FRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHI 208 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i 208 (265)
..+........ ....+|||+|||+++|+++|+++|+.||.+.. |.|
T Consensus 90 ~~~~~~~~~~~---------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-~~i 135 (213)
T 4f02_A 90 MWSQRDPSLRK---------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILS-CKV 135 (213)
T ss_dssp EECCCCTHHHH---------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEE
T ss_pred ccccccccccc---------------------------------cccccceECCcccccHHHHHHHHHhhcCCeEE-EEe
Confidence 76653322110 13358999999999999999999999998774 788
Q ss_pred eeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 209 ACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 209 ~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
+.+. +.++|||||+|.+.++|.+||+. ||..|+||+|.|.++.+++.+...
T Consensus 136 ~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 136 VCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp EEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHHH
T ss_pred eccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccchh
Confidence 8775 44899999999999999999997 999999999999999877655444
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.6e-36 Score=247.17 Aligned_cols=178 Identities=19% Similarity=0.293 Sum_probs=144.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
+.+.+.++|||+|||+++|+++|+++|+.|| |.++.+ .++ +|+++|||||+|.+.++|++||+.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 3456789999999999999999999999999 666654 454 7999999999999999999999999999999999998
Q ss_pred ecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEe
Q 024584 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209 (265)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~ 209 (265)
.+....... .........+|||+|||+++|+++|+++|+.||.+.. |.++
T Consensus 88 ~~~~~~~~~-----------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~ 137 (196)
T 1l3k_A 88 RAVSREDSQ-----------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIM 137 (196)
T ss_dssp ECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE-EEEE
T ss_pred cccCccccc-----------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEE-EEEe
Confidence 765432110 0011234579999999999999999999999998874 7788
Q ss_pred eCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 210 CRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 210 ~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
.+. +|+++|||||+|.+.++|.+||..++..|+|+.|.|.++.+++.....
T Consensus 138 ~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 138 TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--------
T ss_pred ecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhccc
Confidence 776 899999999999999999999998999999999999999887655433
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=233.20 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=140.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQD 135 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~ 135 (265)
++|||+|||+++|+++|+++|+.|| |.++.+ .+++++++|||||+|.+.++|++|++ +|+..+.++.|.|..+....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 4799999999999999999999999 556755 46788999999999999999999997 99999999999997664221
Q ss_pred hHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CC
Q 024584 136 YYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DG 214 (265)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g 214 (265)
........+|||+|||+++|+++|+++|+.||.+.. +.++.+. +|
T Consensus 81 ---------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~ 126 (166)
T 3md3_A 81 ---------------------------------QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS-GHVMWDMQTG 126 (166)
T ss_dssp ---------------------------------CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE-EEEEECTTTC
T ss_pred ---------------------------------CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeE-EEEEecCCCC
Confidence 012235679999999999999999999999998874 7787774 89
Q ss_pred CceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 215 KATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 215 ~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
.++|+|||+|.+.++|.+|++. ||..|+||+|.|.++++
T Consensus 127 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 127 SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999997 99999999999998863
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3e-34 Score=228.01 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
+.++|||+|||+++++++|+++|+.+| |.++.+. + .+|+++|||||+|.+.++|++|++ +++..+.|+.|.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 478999999999999999999999999 5566543 4 489999999999999999999998 99999999999997664
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~ 212 (265)
... ......+|+|+|||+++|+++|+++|++||.+.. +.++.++
T Consensus 82 ~~~-----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~~ 125 (168)
T 1b7f_A 82 PGG-----------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ-KNILRDK 125 (168)
T ss_dssp CCS-----------------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE-EEEEECT
T ss_pred CCc-----------------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE-EEEEEcC
Confidence 221 1124578999999999999999999999998774 7888777
Q ss_pred -CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEEeC
Q 024584 213 -DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELFPS 251 (265)
Q Consensus 213 -~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~~~ 251 (265)
+|+++|+|||+|.+.++|.+|++. ||..|.| ++|.|.++
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 899999999999999999999997 9999977 99999875
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5e-34 Score=226.18 Aligned_cols=159 Identities=21% Similarity=0.277 Sum_probs=138.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
+.++|||+|||+++++++|+++|+.+| |.++.+ .++ +|+++|||||+|.+.++|++|++ +|+..+.+++|.|..+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 368999999999999999999999999 556644 455 89999999999999999999998 99999999999997654
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP 212 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~ 212 (265)
... ......+|||+|||+++|+++|+++|+.||.+.. +.++.+.
T Consensus 81 ~~~-----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~-~~i~~~~ 124 (167)
T 1fxl_A 81 PSS-----------------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT-SRILVDQ 124 (167)
T ss_dssp CCC-----------------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECT
T ss_pred CCc-----------------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeE-EEEEecC
Confidence 221 1124568999999999999999999999998775 7777776
Q ss_pred -CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeE--EEEEeC
Q 024584 213 -DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRY--VELFPS 251 (265)
Q Consensus 213 -~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~--i~V~~~ 251 (265)
+|+++|+|||+|.+.++|.+|++. ||..|+|+. |.|.++
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 889999999999999999999997 999999975 777654
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.5e-35 Score=233.35 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=140.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
+.++|||+|||+++|+++|+++|+.|| |.++.++ + .+|+++|||||+|.+.++|++|++. +..+.|+.|.|..+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999 5567554 5 3799999999999999999999993 5789999999877654
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP- 212 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~- 212 (265)
.... ....+|||+|||+++|+++|+++|+.||.+.. |.++.++
T Consensus 81 ~~~~-----------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~i~~~~~ 124 (167)
T 2cjk_A 81 RDEQ-----------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID-AQLMLDKD 124 (167)
T ss_dssp HHHH-----------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE-EECCCSSS
T ss_pred hhhc-----------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEE-EEEEEcCC
Confidence 3211 13458999999999999999999999997764 7887775
Q ss_pred CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHH
Q 024584 213 DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 213 ~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~ 254 (265)
+|+++|+|||+|.+.++|.+|+++|+..|+||+|.|.++.++
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 799999999999999999999998999999999999998764
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.6e-34 Score=236.07 Aligned_cols=174 Identities=16% Similarity=0.290 Sum_probs=143.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
.+.++|||+|||+++|+++|+++|+.|| |.++.++ +. +|+++|||||+|.+.++|++||+ +|+..|.++.|.|..+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4578999999999999999999999999 6667654 54 89999999999999999999999 9999999999999776
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
............... ......+|||+|||+++|+++|+++|+.||.+.. |.++.+
T Consensus 106 ~~~~~~~~~~~~~~~------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~ 160 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAE------------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS-ATLARD 160 (216)
T ss_dssp SCCGGGHHHHHHHHH------------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE-EEEEEC
T ss_pred CCccccchhhhhhhc------------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE-EEEEec
Confidence 543322111110000 0124579999999999999999999999998874 788877
Q ss_pred C-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 212 P-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 212 ~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
. +|+++|+|||+|.+.++|.+|++. |+..|+||+|.|.++.+.
T Consensus 161 ~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred CCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 5 889999999999999999999997 999999999999988654
No 8
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.9e-35 Score=234.54 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=140.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
+.+.+.++|||+|||+++|+++|+++|+.+| +..+.+. ..+|+++|||||+|.+.++|++||++|+..+.|++|.|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3457789999999999999999999999998 4443333 3578999999999999999999999999999999999977
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEee
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
+.... ........+|||+|||+++|+++|+++|+.||.+ .++
T Consensus 88 ~~~~~---------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v----~~~- 129 (175)
T 1fje_B 88 PKGRD---------------------------------SKKVRAARTLLAKNLSFNITEDELKEVFEDALEI----RLV- 129 (175)
T ss_dssp CCCSS---------------------------------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE----EEE-
T ss_pred CCCcc---------------------------------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE----EEe-
Confidence 65321 0112356799999999999999999999999854 344
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 211 RPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 211 ~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
..+++++|+|||+|.+.++|.+||+. ||..|+||.|.|.++.++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 66899999999999999999999997 999999999999998754
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.1e-33 Score=225.98 Aligned_cols=161 Identities=15% Similarity=0.185 Sum_probs=136.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CC--CceeEEEEEeCCHHHHHHHHH-hCCCccC---CeeEE
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NG--RFSGEAFVVFAGPIQVEFALQ-RDRQNMG---RRYVE 127 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g--~~kG~afV~F~~~e~A~~Al~-~~~~~l~---~r~I~ 127 (265)
+.++|||+|||+++|+++|+++|++|| |.++.+ .+. +| +++|||||+|.+.++|++|++ +|+..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 467999999999999999999999999 556644 455 43 899999999999999999998 9998765 56777
Q ss_pred EeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEE
Q 024584 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207 (265)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~ 207 (265)
+..+.... .......+|||+|||+++|+++|+++|+.||.+. .|.
T Consensus 82 ~~~~~~~~----------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~ 126 (175)
T 3nmr_A 82 MKPADSEK----------------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE-ECR 126 (175)
T ss_dssp EEECGGGC----------------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEE
T ss_pred Eccccccc----------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEE-EEE
Confidence 75544221 1123567899999999999999999999999877 488
Q ss_pred EeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC---CeEEEEEeCC
Q 024584 208 IACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG---SRYVELFPST 252 (265)
Q Consensus 208 i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~---gr~i~V~~~~ 252 (265)
++.+++|+++|+|||+|.+.++|.+||+. ||..+. +|+|.|.++.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 127 ILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 98888999999999999999999999987 988776 4999998863
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.6e-34 Score=230.68 Aligned_cols=160 Identities=16% Similarity=0.281 Sum_probs=136.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCC----Cce-----eEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeE
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGL----DIV-----DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYV 126 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~----giv-----~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I 126 (265)
++.++|||+|||+++|+++|+++|+.+ |++ .+ .....++++|||||+|.++++|++|+++|+..+.|+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v-~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV-LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE-EEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCce-eeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 357899999999999999999999999 521 11 11123566899999999999999999999999999999
Q ss_pred EEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceE
Q 024584 127 EVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI 206 (265)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v 206 (265)
.|..+... .......+|||+|||+++|+++|+++|++||.+.. |
T Consensus 81 ~v~~~~~~-----------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-v 124 (172)
T 2g4b_A 81 KIRRPHDY-----------------------------------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKA-F 124 (172)
T ss_dssp EEECCSSC-----------------------------------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEE-E
T ss_pred eecCCccc-----------------------------------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceE-E
Confidence 99654321 01124678999999999999999999999998874 8
Q ss_pred EEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 207 HIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 207 ~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
.++.++ +|+++|+|||+|.+.++|.+|++. ||..|+||+|.|.+++
T Consensus 125 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 125 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 888886 899999999999999999999997 9999999999999875
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=9.4e-34 Score=231.14 Aligned_cols=183 Identities=14% Similarity=0.229 Sum_probs=140.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-cee-------EEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEE
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVD-------VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~-------v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~ 127 (265)
...++|||+|||+++|+++|+++|+.+| +.. .+.....++++|||||+|.+.++|++||++|+..|.|++|.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 3578999999999999999999999994 211 11112246778999999999999999999999999999999
Q ss_pred EeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEE
Q 024584 128 VFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIH 207 (265)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~ 207 (265)
|..+...... ..... . ..................+|||+|||+++|+++|+++|+.||.+.. |.
T Consensus 82 v~~~~~~~~~---------~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~ 145 (198)
T 2yh0_A 82 IRRPHDYQPL---------PGMSE-----N-PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA-FN 145 (198)
T ss_dssp EECCCCCCCC---------CCSSS-----C-SSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE-EE
T ss_pred EeCCCCCCCC---------CCCcC-----C-CcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE-EE
Confidence 9766532100 00000 0 0000000011122356689999999999999999999999998764 88
Q ss_pred EeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 208 IACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 208 i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
++.+. +|+++|+|||+|.+.++|.+|++. |+..|+|+.|.|.++.++
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 88886 899999999999999999999997 999999999999998764
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-32 Score=236.83 Aligned_cols=171 Identities=18% Similarity=0.247 Sum_probs=148.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
+..++|||+|||+++|+++|+++|+.+| |..+.+ .+. +|+++|||||+|.+.++|.+|++ +|+..++|+.|.|..+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3467999999999999999999999999 555644 454 89999999999999999999997 9999999999999877
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC-CHHHHHHhhhcCCceeceEEEee
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSV-KKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~-t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
..... ........+|||+|||+++ |+++|+++|+.||.+.. |.|+.
T Consensus 173 ~~~~~--------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~-v~i~~ 219 (284)
T 3smz_A 173 DAGQL--------------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTF-CQLAC 219 (284)
T ss_dssp CGGGC--------------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE-EEEEE
T ss_pred CCCCC--------------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEE-EEEEE
Confidence 64321 0112356789999999995 99999999999997764 88888
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHH
Q 024584 211 RPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRA 259 (265)
Q Consensus 211 ~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~ 259 (265)
+++|+++|+|||+|.+.++|.+|+.. ||..|+||+|.|.++.+++..+.
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 269 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHH
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccc
Confidence 88999999999999999999999997 99999999999999987755443
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.4e-31 Score=230.37 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=140.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDIC----KFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYV 126 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~----~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I 126 (265)
+...+.++|||+|||+++|+++|+ ++|+.|| |.+|.+. .+|+++|||||+|.+.++|++|++ +|+..|.|+.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc-CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 345779999999999999999977 8999999 5566554 488999999999999999999997 99999999999
Q ss_pred EEeecchhhhHHHH-hhh---------c-------------ccC-CCCCC---CCCCC----------------------
Q 024584 127 EVFRCKRQDYYNAV-ASE---------V-------------NYE-GIYDN---DFHGS---------------------- 157 (265)
Q Consensus 127 ~v~~~~~~~~~~~~-~~~---------~-------------~~~-~~~~~---~~~~~---------------------- 157 (265)
.|..+......... ... . ... ..... .....
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99877543210000 000 0 000 00000 00000
Q ss_pred ----CC---CCCC--------------------CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEee
Q 024584 158 ----PP---PSRA--------------------KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 158 ----~~---~~~~--------------------~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
+. .... ............++|||+|||+++|+++|+++|+.||.+.. |.++.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~-v~~~~ 241 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE-VRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE-EEEec
Confidence 00 0000 00001122345689999999999999999999999998774 77774
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC-CeEEEEEeCC
Q 024584 211 RPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG-SRYVELFPST 252 (265)
Q Consensus 211 ~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~-gr~i~V~~~~ 252 (265)
+. +|+|||+|.+.++|.+||+. ||..|+ |+.|.|.++.
T Consensus 242 ~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 43 58999999999999999997 999999 9999999875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.5e-32 Score=224.91 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=135.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLP-FNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp-~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
.+.++|||+||| +++|+++|+++|+.|| |.++.++.. ++|||||+|.+.++|++|++ +|+..|.|++|.|..+.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 457899999999 8999999999999999 666766532 47999999999999999999 99999999999998775
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCC---CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCce-eceEEE
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKR---YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII-EDKIHI 208 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~-~~~v~i 208 (265)
.....................+... ...+... ........+..+|||+|||+++|+++|+++|++||.+ ...|++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSES-RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTC-TTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred CCccCCCcccccccCCccccccCCC-ccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 4321000000000000000000000 0000000 0000112356789999999999999999999999976 235777
Q ss_pred eeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe----EEEEEeC
Q 024584 209 ACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR----YVELFPS 251 (265)
Q Consensus 209 ~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr----~i~V~~~ 251 (265)
+.+. +.++|+|||+|.+.++|.+||.. |++.|.|+ ++.|.++
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 7665 56679999999999999999997 99999886 5666543
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=1.6e-31 Score=230.23 Aligned_cols=154 Identities=18% Similarity=0.325 Sum_probs=138.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
.+.++|||+|||+++|+++|+++|+.|||+.+.+ ++++|||||+|.+.++|++|++ +|+..+.|++|.|..+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 4578999999999999999999999999666665 6788999999999999999998 99999999999995421
Q ss_pred hhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-C
Q 024584 135 DYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-D 213 (265)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~ 213 (265)
...+|||+|||+++|+++|+++|+.||.+.. +.++.+. +
T Consensus 94 ---------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~ 133 (284)
T 3smz_A 94 ---------------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLER-CFLVYSERT 133 (284)
T ss_dssp ---------------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTT
T ss_pred ---------------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE-EEEEeeCCC
Confidence 3358999999999999999999999998774 7777765 8
Q ss_pred CCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 214 GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 214 g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
|+++|+|||+|.+.++|.+|+.. |+..|+|+.|.|.++.++.
T Consensus 134 g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 134 GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999976 9999999999999988764
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=1.3e-31 Score=228.63 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=137.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....+.++|||+|||+++|+++|+++|+.|| |..+.+. +++|||||+|.+.++|++|++ +|+..+.|+.|.|..
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 3456788999999999999999999999999 6667663 457999999999999999998 999999999999966
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEee
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIAC 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~ 210 (265)
+. ...+|||+|||+.+|+++|+++|+.||.+.. |.++.
T Consensus 93 a~-----------------------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-v~i~~ 130 (261)
T 3sde_A 93 AT-----------------------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEK-AVVVV 130 (261)
T ss_dssp CC-----------------------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEE
T ss_pred cc-----------------------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEE-EEeee
Confidence 43 2458999999999999999999999998774 78888
Q ss_pred CCCCCceeEEEEEECCHHHHHHHHHh--CCCeeC---CeEEEEEeCCHH
Q 024584 211 RPDGKATGEAYVEFVSVEEAKRAMCK--DKMTIG---SRYVELFPSTPD 254 (265)
Q Consensus 211 ~~~g~~~G~afV~F~s~~~A~~Al~~--~g~~l~---gr~i~V~~~~~~ 254 (265)
+++|+++|+|||+|.+.++|.+||.. ++..+. +|+|.|.++.+.
T Consensus 131 ~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 131 DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp ETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 88999999999999999999999997 566665 999999988654
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.8e-31 Score=230.87 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=131.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
...+++.++|||+|||+++|+++|+++|+.|| |..+.+. +..+ ++|||||+|.+.++|++||++|+..++|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 34567899999999999999999999999999 6667554 5554 5899999999999999999999999999999995
Q ss_pred ecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCC-ceeceEEE
Q 024584 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK-IIEDKIHI 208 (265)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g-~~~~~v~i 208 (265)
.+ ...+|||+|||+++|+++|+++|+.|| .+. .|.+
T Consensus 114 ~~------------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~-~v~i 150 (292)
T 2ghp_A 114 HL------------------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVAL-SIRL 150 (292)
T ss_dssp EC------------------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCC-EEEC
T ss_pred EC------------------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeE-EEEE
Confidence 42 245899999999999999999999999 666 4888
Q ss_pred eeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHH
Q 024584 209 ACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDE 255 (265)
Q Consensus 209 ~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e 255 (265)
+.+..|.++|||||+|.+.++|.+|++. |+..|+|+.|.|.++.+..
T Consensus 151 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 151 PSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp C-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 8888889999999999999999999996 9999999999999987654
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.6e-31 Score=229.82 Aligned_cols=169 Identities=11% Similarity=0.169 Sum_probs=137.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ce-eEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IV-DVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv-~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
..++|||+|||+++++++|+++|+.+| .+ .+.+ .+..|.++|||||+|.+.++|.+|++ +|+..+.|+.|.|..+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999998 55 4544 35678899999999999999999999 99999999999998765
Q ss_pred hhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHHhhhcCCceeceEEEeeC
Q 024584 133 RQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFS-VKKSEIVQFFKDYKIIEDKIHIACR 211 (265)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~t~~dL~~~F~~~g~~~~~v~i~~~ 211 (265)
....... .........+|||+|||++ +|+++|+++|+.||.+.. |.++.+
T Consensus 196 ~~~~~~~----------------------------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~-v~i~~~ 246 (292)
T 2ghp_A 196 PLEKSKR----------------------------TDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK-INIPAG 246 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE-EECCSC
T ss_pred CCccccc----------------------------ccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE-EEEEec
Confidence 4321100 0012245679999999999 999999999999998874 888888
Q ss_pred CC--CCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCHH
Q 024584 212 PD--GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 212 ~~--g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~~ 254 (265)
.+ |+++|+|||+|.+.++|.+||.+||..|+||+|.|.++.++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 76 99999999999999999999933999999999999998764
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.3e-31 Score=221.10 Aligned_cols=189 Identities=16% Similarity=0.211 Sum_probs=137.6
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPF-NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~-~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+.++.++|||+|||+ ++++++|+++|+.|| |.++.+.... +|||||+|.+.++|++|++ +|+..+.|+.|.|..
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999999999 999999999999999 6667654322 7899999999999999998 999999999999987
Q ss_pred cchhhhHHHHhhhcccCCCCCCCCCCCCCCCCC---CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCC-ceeceE
Q 024584 131 CKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRA---KRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK-IIEDKI 206 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g-~~~~~v 206 (265)
+............ ........+.... ..+. ..........+..+|||+|||+.+|+++|+++|+.|| .+. .|
T Consensus 107 a~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~-~v 182 (229)
T 2adc_A 107 SKHQNVQLPREGQ--EDQGLTKDYGNSP-LHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GF 182 (229)
T ss_dssp CSCCCCCCCCSSS--STTTTEEECTTCS-SCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE-EE
T ss_pred ecCccccCccccc--cccccccccccCc-ccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee-EE
Confidence 7533211000000 0000000000000 0000 0000011234568999999999999999999999999 666 47
Q ss_pred EEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC-CeEEEEEeCCH
Q 024584 207 HIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG-SRYVELFPSTP 253 (265)
Q Consensus 207 ~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~-gr~i~V~~~~~ 253 (265)
.++.+ .+|+|||+|.+.++|.+||+. ||..|+ ||.|.|.++.+
T Consensus 183 ~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 183 KFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 77542 367999999999999999996 999999 99999999865
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.1e-31 Score=216.67 Aligned_cols=186 Identities=17% Similarity=0.221 Sum_probs=135.8
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 57 SFPVVRLRGLPF-NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 57 ~~~~vfV~nLp~-~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
..++|||+|||+ ++++++|+++|+.|| |.++.+.... +|||||+|.+.++|++|++ +|+..+.|+.|.|..+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 368999999999 999999999999999 6667654322 7899999999999999998 999999999999987754
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCC-C--CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCC-ceeceEEEe
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAK-R--YNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYK-IIEDKIHIA 209 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g-~~~~~v~i~ 209 (265)
......... .........+... ...+.. + ........+..+|||+|||+.+|+++|+++|+.|| .+. .|.++
T Consensus 79 ~~~~~~~~~--~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~-~v~i~ 154 (198)
T 1qm9_A 79 QNVQLPREG--QEDQGLTKDYGNS-PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFF 154 (198)
T ss_dssp CSCCCSSSS--SSSSSCEEESSCC-CTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC-EEEES
T ss_pred CCcCCCCcC--CccccccccccCC-chhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce-EEEEE
Confidence 321000000 0000000000000 000000 0 00111224578999999999999999999999999 665 47775
Q ss_pred eCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC-CeEEEEEeCCH
Q 024584 210 CRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG-SRYVELFPSTP 253 (265)
Q Consensus 210 ~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~-gr~i~V~~~~~ 253 (265)
.+ .+|+|||+|.+.++|.+|++. ||..|+ |++|.|.++.+
T Consensus 155 ~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 155 QK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred eC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 43 368999999999999999997 999999 99999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=9.2e-24 Score=166.48 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=102.5
Q ss_pred CceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024584 95 RFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQME 173 (265)
Q Consensus 95 ~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (265)
+++|||||+|.+.++|++|++ +++.......+.+........ .... . ..........
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------~--~~~~~~~~~~ 68 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT-------VTEG-------------S--HHHHHHMDVE 68 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEE-------EECC-------------C--CCSSCCCCCC
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccc-------cccc-------------c--cccccccCCC
Confidence 699999999999999999998 665443333333321111000 0000 0 0000112234
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +|+++|||||+|.+.++|++||+. |+..|+|++|.|.++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD-VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEE-EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999998764 7888775 899999999999999999999997 999999999999988
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.+.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.6e-23 Score=155.50 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
....+|||+|||+++|+++|+++|+.|| |..+.+....+.++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3466899999999999999999999999 66675543345689999999999999999998 999999999999977653
Q ss_pred hhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHH
Q 024584 134 QDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSE 191 (265)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~d 191 (265)
+...... .........+|||+|||+++|++-
T Consensus 83 ~~~~~~~---------------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAE---------------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------------------------
T ss_pred ccccccc---------------------------cccccCCCCceEeCCCCCCccccc
Confidence 2210000 001112335799999999999863
No 23
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=9.4e-23 Score=153.89 Aligned_cols=92 Identities=39% Similarity=0.636 Sum_probs=84.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCce---eceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~---~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
...+|||+|||+++|++||+++|++||.+ ...|+|+.+.+|+++|||||+|.+.++|++||++|+..|+||+|+|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 56799999999999999999999999965 245899988899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcC
Q 024584 251 STPDEARRAESRSRQ 265 (265)
Q Consensus 251 ~~~~e~~~~~~r~r~ 265 (265)
++++||.+++.+.++
T Consensus 102 a~~~e~~~~~~~~~~ 116 (123)
T 2dha_A 102 STAAEVQQVLNRFSS 116 (123)
T ss_dssp ECHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhccC
Confidence 999999999887653
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=4.8e-22 Score=155.39 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=105.5
Q ss_pred CCceeEEEEEeCCHHHHHHHHH-h-CCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024584 94 GRFSGEAFVVFAGPIQVEFALQ-R-DRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQ 171 (265)
Q Consensus 94 g~~kG~afV~F~~~e~A~~Al~-~-~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (265)
...+|+++|+|.+.++|++|++ + |+..+.| .|.+..+...... ...... .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~--------~~~~~~-----------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTV--------TEGSHH-----------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEE--------ECSSSS-----------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccc--------cccccc-----------ccccccccC
Confidence 4678999999999999999998 8 9999999 9998665432110 000000 000011122
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.++.+ ++|||||+|.+.++|.+||.. |+..|+|++|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~-v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRS-VWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE-EEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE-EEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346689999999999999999999999998764 777765 688999999999999999996 99999999999998
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
+.+
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 25
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.87 E-value=1.4e-21 Score=146.76 Aligned_cols=91 Identities=32% Similarity=0.589 Sum_probs=84.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCc---eeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKI---IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~---~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~ 249 (265)
...++|||+|||+++|+++|+++|+.||. +. .|+|+.+.+|+++|||||+|.+.++|++||++|+..|+||+|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA-GVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG-GEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce-eEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45689999999999999999999999997 45 589998888999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHhhc
Q 024584 250 PSTPDEARRAESRSR 264 (265)
Q Consensus 250 ~~~~~e~~~~~~r~r 264 (265)
+++++++..++.+.+
T Consensus 94 ~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 94 KSHRTEMDWVLKHSG 108 (118)
T ss_dssp EECHHHHHHHHHTTS
T ss_pred ECCHHHHHHHHHHhC
Confidence 999999999988765
No 26
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=143.06 Aligned_cols=81 Identities=36% Similarity=0.565 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
..+...++|||+|||+++||+||+++|++||++.+.+ .+++|+++|||||+|.+.++|++||++|+..|++|.|.|..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4456788999999999999999999999999878744 578999999999999999999999999999999999999876
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 27
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.86 E-value=2e-21 Score=149.19 Aligned_cols=89 Identities=31% Similarity=0.577 Sum_probs=82.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCc---eeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKI---IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~---~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~ 249 (265)
....+|||+|||+++|++||+++|+.||. +. .|.|+.+++|+++|||||+|.+.++|++||++|+..|+||+|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~-~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA-GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST-TEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45689999999999999999999999997 44 589998888999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHh
Q 024584 250 PSTPDEARRAESR 262 (265)
Q Consensus 250 ~~~~~e~~~~~~r 262 (265)
+++++++.+++.+
T Consensus 121 ~a~~~e~~~~~~~ 133 (136)
T 2hgl_A 121 KSHRTEMDWVLKH 133 (136)
T ss_dssp ECCHHHHHHHHTT
T ss_pred ECChHHHHHHHhh
Confidence 9999999988765
No 28
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=144.94 Aligned_cols=92 Identities=35% Similarity=0.637 Sum_probs=83.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
.....+|||+|||+++|+++|+++|+.||.+...+.+..+.+|+++|||||+|.+.++|++||++|+..|+||+|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34668999999999999999999999999887656777777999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q 024584 252 TPDEARRAESRS 263 (265)
Q Consensus 252 ~~~e~~~~~~r~ 263 (265)
+++++...+.+.
T Consensus 102 ~~~~~~~~~~~~ 113 (124)
T 1wel_A 102 TKKGMLEKIDMI 113 (124)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999987766543
No 29
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=141.19 Aligned_cols=87 Identities=24% Similarity=0.497 Sum_probs=78.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|++||+++|++|+ +. .|.|+.+++|+++|||||+|.+.++|++||++|++.|+||.|.|.+++
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~~-v~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGLR-VD-AVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTSC-CC-EEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCC-ee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 3457999999999999999999999994 33 489998889999999999999999999999779999999999999999
Q ss_pred HHHHHHHHH
Q 024584 253 PDEARRAES 261 (265)
Q Consensus 253 ~~e~~~~~~ 261 (265)
++++..+..
T Consensus 92 ~~~~~~~~g 100 (109)
T 2dnn_A 92 ERQWVAAGG 100 (109)
T ss_dssp HHHHHHHHC
T ss_pred ccchhhcCC
Confidence 999877653
No 30
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=143.76 Aligned_cols=88 Identities=33% Similarity=0.487 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
...+.++|||+|||+++|++||+++|++|.|.+|.| .+++|+++|||||+|.+.++|++||++|+..|++|.|.|..+.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 345578999999999999999999999998878755 4778999999999999999999999999999999999999999
Q ss_pred hhhhHHHHh
Q 024584 133 RQDYYNAVA 141 (265)
Q Consensus 133 ~~~~~~~~~ 141 (265)
..+|..+..
T Consensus 92 ~~~~~~~~g 100 (109)
T 2dnn_A 92 ERQWVAAGG 100 (109)
T ss_dssp HHHHHHHHC
T ss_pred ccchhhcCC
Confidence 888876543
No 31
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=143.00 Aligned_cols=92 Identities=27% Similarity=0.567 Sum_probs=84.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCc---eeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKI---IEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~---~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V 248 (265)
.....+|||+|||+++|+++|+++|+.||. +. .|.|+.+..|+++|||||+|.+.++|++||++|+..|+||+|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN-GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT-TEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc-eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 346789999999999999999999999997 55 48898888899999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHhhc
Q 024584 249 FPSTPDEARRAESRSR 264 (265)
Q Consensus 249 ~~~~~~e~~~~~~r~r 264 (265)
.+++++++.+++.+.+
T Consensus 87 ~~a~~~~~~~~~~~~~ 102 (107)
T 2lmi_A 87 YEINNEDVDALMKSLQ 102 (107)
T ss_dssp EECCHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHhhc
Confidence 9999999999887764
No 32
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.85 E-value=1.7e-21 Score=147.42 Aligned_cols=85 Identities=45% Similarity=0.806 Sum_probs=78.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|++|+++...|.|+.+++|+++|||||+|.+.++|++||++++..|+||+|.|.+++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 45678999999999999999999999976644588998888999999999999999999999998899999999999999
Q ss_pred HHHHH
Q 024584 253 PDEAR 257 (265)
Q Consensus 253 ~~e~~ 257 (265)
++||.
T Consensus 120 ~~e~~ 124 (126)
T 2hgm_A 120 QEEVR 124 (126)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99875
No 33
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9e-21 Score=141.36 Aligned_cols=90 Identities=20% Similarity=0.410 Sum_probs=82.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|+.||.+...|.|+.+++|+++|||||+|.+.++|++||+.|+..|+||+|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 45689999999999999999999999998833589998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 024584 253 PDEARRAESR 262 (265)
Q Consensus 253 ~~e~~~~~~r 262 (265)
++++.....+
T Consensus 93 ~~~~~~~~~~ 102 (114)
T 2cpy_A 93 LEDMREIEKN 102 (114)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9998877653
No 34
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-21 Score=142.00 Aligned_cols=87 Identities=40% Similarity=0.727 Sum_probs=80.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|+.||.+...|.|+.+.+|+++|||||+|.+.++|++||++|+..|+||+|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45689999999999999999999999998876688888889999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 024584 253 PDEARRA 259 (265)
Q Consensus 253 ~~e~~~~ 259 (265)
+++|.++
T Consensus 93 ~~~~~~~ 99 (104)
T 1wg5_A 93 RAEVRTS 99 (104)
T ss_dssp TTTSCCS
T ss_pred HHHHHHh
Confidence 8887543
No 35
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=137.07 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
..+.+|||+|||+++|+++|+++|++||.+.. |.++.++ +|+++|||||+|.+.++|++||+. ||..|+||+|.|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVES-AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE-EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35678999999999999999999999998774 8888776 799999999999999999999997 99999999999999
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
+.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 36
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.83 E-value=4.9e-21 Score=144.85 Aligned_cols=85 Identities=42% Similarity=0.790 Sum_probs=75.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCce--eEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV--DVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEV 128 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv--~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v 128 (265)
++++.+.++|||+|||+++||+||+++|++|+|+ +|.| .+++|+++|||||+|.++++|++||++++..|+||+|.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 3455678999999999999999999999999988 6755 467799999999999999999999998889999999999
Q ss_pred eecchhhh
Q 024584 129 FRCKRQDY 136 (265)
Q Consensus 129 ~~~~~~~~ 136 (265)
.++..+++
T Consensus 116 ~~a~~~e~ 123 (126)
T 2hgm_A 116 FKSSQEEV 123 (126)
T ss_dssp EEECHHHH
T ss_pred EECCHHHh
Confidence 99887664
No 37
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=141.52 Aligned_cols=88 Identities=31% Similarity=0.558 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCc-----eeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDI-----VDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~gi-----v~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
.+.++|||+|||+++|++||++||++||. ..|.| .+.+|+++|||||+|.+.++|++||++|++.|++|+|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 55789999999999999999999999984 35644 5789999999999999999999999999999999999999
Q ss_pred ecchhhhHHHHhhh
Q 024584 130 RCKRQDYYNAVASE 143 (265)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (265)
.+..+++.......
T Consensus 101 ~a~~~e~~~~~~~~ 114 (123)
T 2dha_A 101 RSTAAEVQQVLNRF 114 (123)
T ss_dssp EECHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhc
Confidence 99998887766554
No 38
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.1e-21 Score=139.12 Aligned_cols=81 Identities=41% Similarity=0.707 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|++||+++|++||++ .|.|+.+++|+++|||||+|.+.++|++||++|+..|+||.|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 456799999999999999999999999965 589998889999999999999999999999779999999999999887
Q ss_pred HHH
Q 024584 253 PDE 255 (265)
Q Consensus 253 ~~e 255 (265)
+.+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 39
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=9.5e-20 Score=136.63 Aligned_cols=89 Identities=38% Similarity=0.659 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCc----eeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI----VDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~gi----v~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~ 127 (265)
++..+.++|||+|||+++|+++|+++|+.||. ..+.+ .+++|+++|||||+|.+.++|++||++|+..|++|.|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 34567899999999999999999999999996 45644 57789999999999999999999999999999999999
Q ss_pred EeecchhhhHHHHh
Q 024584 128 VFRCKRQDYYNAVA 141 (265)
Q Consensus 128 v~~~~~~~~~~~~~ 141 (265)
|..+..+++.....
T Consensus 92 V~~a~~~~~~~~~~ 105 (118)
T 2db1_A 92 VFKSHRTEMDWVLK 105 (118)
T ss_dssp EEEECHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 99998877655443
No 40
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=136.21 Aligned_cols=84 Identities=44% Similarity=0.831 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-e-EEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-D-VLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~-v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
++..+.++|||+|||+++|+++|+++|++||.+ + +.+ .+.+|+++|||||+|.+.++|++||+.|+..|++|.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 445678999999999999999999999999944 4 544 4678999999999999999999999999999999999998
Q ss_pred ecchhhh
Q 024584 130 RCKRQDY 136 (265)
Q Consensus 130 ~~~~~~~ 136 (265)
.+...++
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 8876543
No 41
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=5.6e-20 Score=141.05 Aligned_cols=87 Identities=39% Similarity=0.670 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCc---e-eEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI---V-DVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~gi---v-~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~ 127 (265)
++..+.++|||+|||+++|++||+++|++||. + .|.+ .+++|+++|||||+|.+.++|++||++|+..|++|+|.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 45567899999999999999999999999995 3 4644 57779999999999999999999999999999999999
Q ss_pred EeecchhhhHHH
Q 024584 128 VFRCKRQDYYNA 139 (265)
Q Consensus 128 v~~~~~~~~~~~ 139 (265)
|..+...++...
T Consensus 119 V~~a~~~e~~~~ 130 (136)
T 2hgl_A 119 VFKSHRTEMDWV 130 (136)
T ss_dssp EEECCHHHHHHH
T ss_pred EEECChHHHHHH
Confidence 999988776543
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=134.13 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
..++|||+|||+++|+++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++|++ +|+..|+||+|.|..+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467899999999999999999999999 666744 454 79999999999999999999998 99999999999997764
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=134.23 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=75.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
+..+|||+|||+++|+++|+++|++||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |++.|.||.|.|..+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~-v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEE-VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeE-EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999998874 7888887 699999999999999999999997 999999999999998
Q ss_pred CHHHHH
Q 024584 252 TPDEAR 257 (265)
Q Consensus 252 ~~~e~~ 257 (265)
...+-.
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 866533
No 44
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=135.11 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCcee--EEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVD--VLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~--v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
.+.+.++|||+|||+++|+++|+++|+.||+++ +.+ .+++|+++|||||+|.+.++|++||++|+..|+||.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 356789999999999999999999999999663 755 46799999999999999999999999999999999999999
Q ss_pred cchhhhHHHH
Q 024584 131 CKRQDYYNAV 140 (265)
Q Consensus 131 ~~~~~~~~~~ 140 (265)
+..++.....
T Consensus 91 a~~~~~~~~~ 100 (114)
T 2cpy_A 91 VTLEDMREIE 100 (114)
T ss_dssp ECHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9887765544
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=134.37 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCC-ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh--CCCeeCCeEEEEEeC
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYK-IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK--DKMTIGSRYVELFPS 251 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g-~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~--~g~~l~gr~i~V~~~ 251 (265)
++|||+|||+++|+++|+++|++|| .+. .|+|+.++ +|+++|||||+|.+.++|++||+. |+..|+||+|.|.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~-~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAR-EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCS-BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeE-EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 5899999999999999999999999 555 48888776 789999999999999999999985 567899999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 46
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=135.18 Aligned_cols=90 Identities=32% Similarity=0.579 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-e-EEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-D-VLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~-v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
++..+.++|||+|||+++|+++|+++|+.||.+ . +++ .+.+|+++|||||+|.+.++|++||++|+..|+||.|.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 345667999999999999999999999999944 4 344 4579999999999999999999999999999999999999
Q ss_pred ecchhhhHHHHhh
Q 024584 130 RCKRQDYYNAVAS 142 (265)
Q Consensus 130 ~~~~~~~~~~~~~ 142 (265)
.+..+++......
T Consensus 100 ~a~~~~~~~~~~~ 112 (124)
T 1wel_A 100 PITKKGMLEKIDM 112 (124)
T ss_dssp EECHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 9998887655443
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=132.11 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCc-eeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCC----eeCCeEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKI-IEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKM----TIGSRYV 246 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~-~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~----~l~gr~i 246 (265)
.-.+|||+|||+++|+++|+++|++||. ....|+++.|+ +|+++|||||+|.+.++|++||+. |+. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4568999999999999999999999994 23358888887 799999999999999999999997 876 5999999
Q ss_pred EEEeCC
Q 024584 247 ELFPST 252 (265)
Q Consensus 247 ~V~~~~ 252 (265)
.|.++.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999875
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=131.76 Aligned_cols=81 Identities=10% Similarity=0.053 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
++.++|||+|||++++|++|+++|++|| |.++.+ .|+ +|+++|||||+|.+.++|++|++ +|+..|.||.|.|..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999 666744 565 69999999999999999999999 9999999999999888
Q ss_pred chhhh
Q 024584 132 KRQDY 136 (265)
Q Consensus 132 ~~~~~ 136 (265)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 65443
No 49
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=1.1e-20 Score=145.54 Aligned_cols=82 Identities=37% Similarity=0.595 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
.+...++|||+|||+++||+||+++|++||+++|.| .+++|+++|||||+|.+.++|++||++|+..|++|+|.|..+.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 446678999999999999999999999999878755 4778999999999999999999999999999999999998876
Q ss_pred hhh
Q 024584 133 RQD 135 (265)
Q Consensus 133 ~~~ 135 (265)
..+
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 50
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=133.94 Aligned_cols=89 Identities=29% Similarity=0.562 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCc----eeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDI----VDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVE 127 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~gi----v~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~ 127 (265)
+.....++|||+|||+++|+++|+++|+.||. ..+.+ .++.|+++|||||+|.+.++|++||++|+..|++|.|.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 34567899999999999999999999999886 34654 46679999999999999999999999999999999999
Q ss_pred EeecchhhhHHHHh
Q 024584 128 VFRCKRQDYYNAVA 141 (265)
Q Consensus 128 v~~~~~~~~~~~~~ 141 (265)
|..+...++.....
T Consensus 86 V~~a~~~~~~~~~~ 99 (107)
T 2lmi_A 86 VYEINNEDVDALMK 99 (107)
T ss_dssp CEECCHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 99998877655443
No 51
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=127.07 Aligned_cols=81 Identities=38% Similarity=0.614 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
+++...++|||+|||+++++++|+++|+.+.|..+.+ .+.+|+++|||||+|.+.++|++||++|+..|+||.|.|..+
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3456789999999999999999999999997777754 567899999999999999999999999999999999999877
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=5.5e-19 Score=131.69 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++||+ +|+..|.++.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999 667744 455 89999999999999999999997 9999999999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
..+..
T Consensus 100 ~~a~~ 104 (115)
T 2cpz_A 100 QLKRS 104 (115)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 77653
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=124.30 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.++.+. +++++|||||+|.+.++|++|++. |+..|+|+.|.|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISD-ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeE-EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35679999999999999999999999998774 8888875 899999999999999999999997 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=127.11 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.++.+.+|+++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE-EEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE-EEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999998764 8888888999999999999999999999987 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 55
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=2.2e-19 Score=133.81 Aligned_cols=105 Identities=19% Similarity=0.341 Sum_probs=89.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
++.+.++|||+|||+++|+++|+++|+.|| |..+.+. .++.++|||||+|.+.++|.+|++ +|+..++|+.|.|..+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 356688999999999999999999999999 5556554 356679999999999999999999 9999999999999877
Q ss_pred chhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCce
Q 024584 132 KRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII 202 (265)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~ 202 (265)
..... -++++...++++|.++|+.||+.
T Consensus 83 ~~~~~-------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 83 NANRA-------------------------------------------FQKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp CHHHH-------------------------------------------TTTSCHHHHHHHHHHHHHHHCCC
T ss_pred cCChh-------------------------------------------hhhhhHhHhHHHHHHHHHHhCCC
Confidence 64421 05677788999999999999964
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.2e-19 Score=123.81 Aligned_cols=78 Identities=15% Similarity=0.392 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|++||.+.. |.++.++ +|+++|||||+|.+.++|++||+.++..|+|+.|.|..+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD-CTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEE-EEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE-EEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46679999999999999999999999998774 7888776 699999999999999999999988889999999999865
No 57
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=125.71 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|+.| .+. .|.|+.+.+|+++|+|||+|.+.++|.+||++|+..|+||.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce-EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 466899999999999999999999999 444 488888889999999999999999999999999999999999999887
Q ss_pred HH
Q 024584 253 PD 254 (265)
Q Consensus 253 ~~ 254 (265)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 58
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=1.1e-20 Score=145.42 Aligned_cols=84 Identities=39% Similarity=0.695 Sum_probs=74.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|++||+++|++||++ .|.|+.+++|+++|||||+|.+.++|++||++|+..|+||+|.|.+++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 355789999999999999999999999954 589998889999999999999999999999669999999999999998
Q ss_pred HHHHHH
Q 024584 253 PDEARR 258 (265)
Q Consensus 253 ~~e~~~ 258 (265)
+.++..
T Consensus 122 ~~~~~~ 127 (139)
T 2hgn_A 122 TTGASN 127 (139)
T ss_dssp CSCC--
T ss_pred CCCCCC
Confidence 876543
No 59
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=137.15 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=76.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCC--ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g--~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
...+|||+|||+++|+++|+++|+.|| .+. .|.|+.++ +|+++|||||+|.+.++|++||+. ||..|+||.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~-~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV-ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999999999 666 48888876 899999999999999999999998 9999999999999
Q ss_pred eCCHHHHHHH
Q 024584 250 PSTPDEARRA 259 (265)
Q Consensus 250 ~~~~~e~~~~ 259 (265)
++.++.+...
T Consensus 133 ~a~~~~~~~~ 142 (156)
T 3n9u_C 133 PATRQNLSQF 142 (156)
T ss_dssp ECCHHHHHHH
T ss_pred EcCCCcchhh
Confidence 9998865543
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=6.2e-19 Score=123.48 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
.+|||+|||+++|+++|+++|+.||.+.. +.++.++ +++++|+|||+|.+.++|++|++. ||..|+|+.|.|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLS-GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEE-EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999999999999999999998774 7788774 899999999999999999999997 99999999999999876
Q ss_pred H
Q 024584 254 D 254 (265)
Q Consensus 254 ~ 254 (265)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=131.30 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=73.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|++||.+.. |.|+.+..|+++|||||+|.+.++|.+||..|+..|+|+.|.|.+..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~-v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEE-EEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEE-EEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 35679999999999999999999999998774 88988888999999999999999999999999999999999998765
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=9e-19 Score=127.93 Aligned_cols=82 Identities=28% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
..+..+.++|||+|||+++++++|+++|+.|||..+.+ .++ +|+++|||||+|.+.++|++||++|+..|.|+.|.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 34456789999999999999999999999999777755 454 7999999999999999999999999999999999997
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 89 ~a~~ 92 (103)
T 2dng_A 89 IAEG 92 (103)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7653
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.4e-19 Score=123.78 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
+...+.++|||+|||+++++++|+++|++|| |..+.+ .++ +|+++|||||+|.+.++|++|+++++..|.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457789999999999999999999999999 556654 454 7999999999999999999999988889999999996
Q ss_pred ec
Q 024584 130 RC 131 (265)
Q Consensus 130 ~~ 131 (265)
.+
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 64
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=125.37 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-cee--------EEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCC
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVD--------VLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQ 119 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~--------v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~ 119 (265)
++++.+.++|||+|||+++++++|+++|+.|| |.. +.+ .+ .+|+++|||||+|.+.++|++|++ +|+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34567789999999999999999999999999 555 644 45 479999999999999999999998 9999
Q ss_pred ccCCeeEEEeec
Q 024584 120 NMGRRYVEVFRC 131 (265)
Q Consensus 120 ~l~~r~I~v~~~ 131 (265)
.|+|+.|.|..+
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999765
No 65
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=125.05 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+.+|+++|+++|+.||.+.. |.|+.+++++++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTK-VTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE-EEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 46789999999999999999999999998774 8899888899999999999999999999996 999999999999987
Q ss_pred C
Q 024584 252 T 252 (265)
Q Consensus 252 ~ 252 (265)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=125.20 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346678999999999999999999999999 666654 46789999999999999999999998 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 93 a~~ 95 (100)
T 2do4_A 93 SNS 95 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=124.95 Aligned_cols=81 Identities=35% Similarity=0.571 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|+.||.+...+.+....+|+++|||||+|.+.++|++||+. |+..|+||.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568999999999999999999999999876544455556899999999999999999999987 999999999999987
Q ss_pred CH
Q 024584 252 TP 253 (265)
Q Consensus 252 ~~ 253 (265)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=127.11 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCc---eeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCc----cCCe
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDI---VDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQN----MGRR 124 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~gi---v~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~----l~~r 124 (265)
...-.+|||+|||+++|+++|+++|++||. .+|.+ .|+ +|+++|||||+|.+.++|++||+ +|+.. |+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456779999999999999999999999993 35655 454 79999999999999999999999 88874 8999
Q ss_pred eEEEeecc
Q 024584 125 YVEVFRCK 132 (265)
Q Consensus 125 ~I~v~~~~ 132 (265)
+|.|..+.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99997764
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=123.86 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=73.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
......+|||+|||+++|+++|+++|+.||.+.. |.++.++ +++++|+|||+|.+.++|.+||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD-VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEE-EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeE-EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3457789999999999999999999999998774 7888776 689999999999999999999997 999999999999
Q ss_pred EeCC
Q 024584 249 FPST 252 (265)
Q Consensus 249 ~~~~ 252 (265)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9875
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=2.5e-19 Score=127.71 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCC--ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g--~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
.+|||+|||+++|+++|+++|+.|| .+. .|.++.++ +|+++|||||+|.+.++|++||+. ||..|+||.|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~-~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC-CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE-EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 666 48888876 899999999999999999999986 999999999999988
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 7754
No 71
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.3e-18 Score=125.14 Aligned_cols=80 Identities=34% Similarity=0.576 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
...+|||+|||+++|+++|+++|+.||.+.....+....+++++|||||+|.+.++|++||+. |+..|+||+|.|..++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457999999999999999999999999877544444455889999999999999999999996 9999999999999876
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 72
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=124.34 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
...+.+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34557789999999999999999999999999 556644 454 68999999999999999999999 999999999999
Q ss_pred Eeecc
Q 024584 128 VFRCK 132 (265)
Q Consensus 128 v~~~~ 132 (265)
|..+.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97654
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.8e-18 Score=126.67 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC---eEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS---RYVEL 248 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g---r~i~V 248 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.+++++++|||||+|.+.++|++||+. |+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE-CTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE-EEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 46789999999999999999999999998774 8898888999999999999999999999996 9999988 99999
Q ss_pred EeCCHH
Q 024584 249 FPSTPD 254 (265)
Q Consensus 249 ~~~~~~ 254 (265)
.++.++
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998764
No 74
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=5.8e-19 Score=131.71 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=70.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
..+|||+|||+++|+++|+++|+.||.+.. |.|+.+. +.++|||||+|.+.++|++||+. |+..|+||.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~-v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILS-CKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEE-EEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457999999999999999999999998774 8888775 45899999999999999999987 99999999999998765
Q ss_pred H
Q 024584 254 D 254 (265)
Q Consensus 254 ~ 254 (265)
+
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1e-18 Score=124.88 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
++..+.++|||+|||+++++++|+++|+.|| |..+.+...+|+++|||||+|.+.++|++|++ +|+..++|+.|.|..
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999 55676655689999999999999999999999 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 83 a~~ 85 (92)
T 2dgv_A 83 DRN 85 (92)
T ss_dssp CSC
T ss_pred cCC
Confidence 653
No 76
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=126.31 Aligned_cols=82 Identities=15% Similarity=0.378 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||++|+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTE-VVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEE-EEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46689999999999999999999999998774 7888775 689999999999999999999999999999999999998
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 77
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.7e-18 Score=126.21 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
.....+|||+|||+.+|+++|+++|+.||.+. .|.|+.+.+|+++|+|||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35678999999999999999999999999876 48898888999999999999999999999997 99999999999988
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 78
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=125.01 Aligned_cols=81 Identities=20% Similarity=0.418 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
+...+.++|||+|||+++++++|+++|+.|| |.++.+. ++ +|+++|||||+|.+.++|++||++|+..|.|+.|.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999 5567554 43 7999999999999999999999999999999999997
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 85 ~a~~ 88 (99)
T 2dgs_A 85 RAEP 88 (99)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7654
No 79
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.3e-18 Score=121.76 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
..-|+|+||++.+|+++|+++|.+||.+.. +++.. ++|||||+|.++++|++|++. |+..|.||+|+|..++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~-~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVS-FHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEE-EEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEE-EEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 457999999999999999999999998875 66653 789999999999999999997 99999999999999998
Q ss_pred HHHHHHH
Q 024584 254 DEARRAE 260 (265)
Q Consensus 254 ~e~~~~~ 260 (265)
.|+....
T Consensus 81 ~~~~~~~ 87 (89)
T 2wbr_A 81 NEVQSIM 87 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877543
No 80
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=125.28 Aligned_cols=82 Identities=17% Similarity=0.351 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISR-IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEE-EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE-EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346789999999999999999999999998774 8888875 889999999999999999999996 9999999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.++
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98764
No 81
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=3.8e-18 Score=124.94 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC---eeEE
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR---RYVE 127 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~---r~I~ 127 (265)
...+.++|||+|||+++++++|+++|+.|| |..+.+ .+++|+++|||||+|.+.++|++||+ +|+..+.+ +.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345689999999999999999999999999 666754 56789999999999999999999998 99999988 9999
Q ss_pred Eeecch
Q 024584 128 VFRCKR 133 (265)
Q Consensus 128 v~~~~~ 133 (265)
|..+..
T Consensus 91 V~~a~~ 96 (105)
T 2dnh_A 91 VKFADT 96 (105)
T ss_dssp EEESCS
T ss_pred EEECcc
Confidence 977654
No 82
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=127.06 Aligned_cols=82 Identities=16% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
+...+.++|||+|||+++++++|+++|+.|| |..+.+. ++ +++++|||||+|.+.++|++|++ +|+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456789999999999999999999999999 5567553 54 89999999999999999999999 9999999999999
Q ss_pred eecchh
Q 024584 129 FRCKRQ 134 (265)
Q Consensus 129 ~~~~~~ 134 (265)
..+...
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 877543
No 83
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=126.99 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=72.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
+....+.++|||+|||+++++++|+++|+.|| |..+.+. + .+++++|||||+|.+.++|++|++ +|+..|.++.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34557789999999999999999999999999 6667654 4 378999999999999999999997 999999999999
Q ss_pred Eeecch
Q 024584 128 VFRCKR 133 (265)
Q Consensus 128 v~~~~~ 133 (265)
|..+..
T Consensus 86 v~~a~~ 91 (102)
T 1x5s_A 86 VDQAGK 91 (102)
T ss_dssp EEEEEC
T ss_pred EEECCC
Confidence 977654
No 84
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.7e-18 Score=121.78 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeC-CCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACR-PDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~-~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|++||.+.. |.++.+ .+++++|+|||+|.+.++|++|++. |+..|+|+.|.|.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD-IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE-EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEE-EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36689999999999999999999999998774 777776 4889999999999999999999987 99999999999988
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=125.18 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+ .+++|+++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3456789999999999999999999999999 556644 56789999999999999999999999 99999999999997
Q ss_pred ecc
Q 024584 130 RCK 132 (265)
Q Consensus 130 ~~~ 132 (265)
.+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 654
No 86
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=125.40 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE-LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEE-EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE-EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46689999999999999999999999998764 8888777 899999999999999999999976 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87754
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=124.46 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+....+.++|||||+|.+.++|++|++ +|+..|+|+.|.|..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999 55676654334499999999999999999998 999999999999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 7643
No 88
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=122.53 Aligned_cols=79 Identities=27% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.++|||+|||+++++++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++|++ +|+..++|+.|.|..
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999 656654 45 489999999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 654
No 89
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=3.9e-18 Score=126.98 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+.+|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD-ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356789999999999999999999999998774 8888875 899999999999999999999997 9999999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.++
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98754
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=127.56 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcC-CC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCc-cCCeeE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAG-LD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQN-MGRRYV 126 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~-~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~-l~~r~I 126 (265)
.+.+.+.++|||+|||+++|+++|+++|+. || |..+.+ .+.+|+++|||||+|.+.++|++||+ +|+.. |+|+.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 455677899999999999999999999999 99 666744 56799999999999999999999999 99999 999999
Q ss_pred EEeecch
Q 024584 127 EVFRCKR 133 (265)
Q Consensus 127 ~v~~~~~ 133 (265)
.|..+..
T Consensus 83 ~v~~a~~ 89 (104)
T 2dhg_A 83 RLSVAIP 89 (104)
T ss_dssp CCCBCCC
T ss_pred EEEEccC
Confidence 9976653
No 91
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=124.83 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+...+|+++|||||+|.+.++|++|++ +|+..|.++.|.|..+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346789999999999999999999999999 66675542389999999999999999999999 9999999999999876
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 91 ~~ 92 (103)
T 2d9p_A 91 QR 92 (103)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 92
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=126.59 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+ .+++|+++|||||+|.+.++|++|++ +|+..|.++.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3446688999999999999999999999999 666644 56789999999999999999999999 99999999999997
Q ss_pred ecc
Q 024584 130 RCK 132 (265)
Q Consensus 130 ~~~ 132 (265)
.+.
T Consensus 90 ~a~ 92 (114)
T 2do0_A 90 MDE 92 (114)
T ss_dssp ECS
T ss_pred Ecc
Confidence 765
No 93
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=3.5e-18 Score=127.31 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS-AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSE-EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999997764 7888877 899999999999999999999987 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8764
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=123.78 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=72.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceece-------EEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeC
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK-------IHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIG 242 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~-------v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~ 242 (265)
.....+|||+|||+++|+++|+++|+.||.+... |.++.++ +|+++|||||+|.+.++|.+||+. ||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3567899999999999999999999999977631 7788775 799999999999999999999996 999999
Q ss_pred CeEEEEEeCC
Q 024584 243 SRYVELFPST 252 (265)
Q Consensus 243 gr~i~V~~~~ 252 (265)
||.|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3.6e-18 Score=124.74 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.|| +. .|.|+.+. +++++|||||+|.+.++|++||++|+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR-SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce-EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 34678999999999999999999999998 44 48888876 68999999999999999999995599999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8764
No 96
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=128.26 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
..+..+|||+|||+++|+++|+++|++|| |..|.+. ++.|+++|||||+|.+.++|++||++++..|+|+.|.|....
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 35678999999999999999999999999 6667554 567999999999999999999999999999999999997654
No 97
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=124.81 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++++++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++||+ +|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 456789999999999999999999999999 556654 45 489999999999999999999999 99999999999997
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 7654
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=125.49 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.+ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITS-AKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEE-EEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999998774 888887 899999999999999999999997 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 87653
No 99
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=122.22 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++.++ +++++|||||+|.+.++|++|++. |+..|+|+.|.|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK-VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEE-EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE-EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 46679999999999999999999999998774 7888776 589999999999999999999986 99999999999988
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
+.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 100
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=5.1e-19 Score=128.70 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=74.8
Q ss_pred CccEEEEcCCCC------CCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC-e
Q 024584 174 HTEILKMRGLPF------SVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS-R 244 (265)
Q Consensus 174 ~~~~l~v~nLp~------~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g-r 244 (265)
..++|||+|||+ ++++++|+++|++||.+.. |.|+.++ +|+++|||||+|.+.++|++||+. ||..|.| |
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~-v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN-MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE-EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE-EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 567999999999 9999999999999998774 8888777 599999999999999999999986 9999999 9
Q ss_pred EEEEEeCCHHHH
Q 024584 245 YVELFPSTPDEA 256 (265)
Q Consensus 245 ~i~V~~~~~~e~ 256 (265)
.|.|.++.+.+-
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987653
No 101
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=123.34 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eE-EEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DV-LLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v-~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....++|||+|||+++++++|+++|+.||.+ .+ ++. +.+|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4567899999999999999999999999944 33 333 5689999999999999999999997 999999999999977
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
+.
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=2.6e-18 Score=126.22 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
++..+.++|||+|||+++|+++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4457789999999999999999999999999 556644 56799999999999999999999999 99999999999997
Q ss_pred ecc
Q 024584 130 RCK 132 (265)
Q Consensus 130 ~~~ 132 (265)
.+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=124.53 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+....+.++|||||+|.+.++|++|++ +|+..|.|+.|.|..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999 55676654444579999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 104
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=123.97 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=73.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
..++|||+|||+++|+++|+++|+.||.+.. |.++.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDN-IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE-EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE-EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5679999999999999999999999998774 7787776 689999999999999999999996 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 105
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=124.58 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceE-EEeeC-CCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI-HIACR-PDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v-~i~~~-~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
..++|||+|||+++|+++|+++|+.||.+.. | .|+.+ .+++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSS-CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 5679999999999999999999999998775 5 88877 4899999999999999999999996 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87653
No 106
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=124.77 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++||+ +|+..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 346788999999999999999999999999 556655 354 89999999999999999999997 99999999999998
Q ss_pred ecchh
Q 024584 130 RCKRQ 134 (265)
Q Consensus 130 ~~~~~ 134 (265)
.+..+
T Consensus 84 ~a~~~ 88 (99)
T 1whw_A 84 PSTIK 88 (99)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 77643
No 107
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=123.63 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=73.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.+..+ ++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD-VEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEE-EEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346789999999999999999999999998774 888877654 899999999999999999997 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 87653
No 108
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=2.2e-18 Score=123.82 Aligned_cols=78 Identities=26% Similarity=0.434 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCce-eE-EEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIV-DV-LLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv-~v-~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
.++.++|||+|||+++++++|+++|+.||.+ .+ ++. +.+|+++|||||+|.+.++|++||+ +|+..|.||.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999944 34 333 4689999999999999999999999 999999999999976
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
++
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.1e-18 Score=136.75 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+.+|+++|+++|+.||.+.. |.|+.+. +|+++|||||+|.+.++|.+||.. |+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN-IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE-EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999998774 7888775 899999999999999999999996 99999999999999
Q ss_pred CCHHHHH
Q 024584 251 STPDEAR 257 (265)
Q Consensus 251 ~~~~e~~ 257 (265)
+.++.-.
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 8765433
No 110
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.9e-18 Score=120.00 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
.++|||+|||+++++++|+++|+.+| |..+.+ .+ .+|+++|||||+|.+.++|++|++ +|+..++|+.|.|..+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999 566644 45 489999999999999999999999 999999999999987764
No 111
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.4e-18 Score=123.99 Aligned_cols=81 Identities=17% Similarity=0.445 Sum_probs=73.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
.++|||+|||+++|+++|+++|+.||.+.. |.++.++ +|+++|||||+|.+.++|.+|++. ||..|+|+.|.|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVIN-LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE-EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEE-EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 468999999999999999999999998774 7888775 689999999999999999999987 9999999999999988
Q ss_pred HHHH
Q 024584 253 PDEA 256 (265)
Q Consensus 253 ~~e~ 256 (265)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7643
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=3.3e-19 Score=136.82 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=74.4
Q ss_pred EEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccE
Q 024584 99 EAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEI 177 (265)
Q Consensus 99 ~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (265)
++|+++++...+.+||+ +++...+++.- .. .. ..........+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~-------------------------~~----------~~~~~~~~~~~ 49 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS-------------------------YG----------RPPPDVEGMTS 49 (135)
T ss_dssp ------------------------------CC-------------------------SC----------CSCSSGGGCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CC-------------------------cC----------CCCCCCCCCCE
Confidence 67788888888888888 77665544320 00 00 01112235678
Q ss_pred EEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 178 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
|||+|||+++|+++|+++|+.||.+.. |.|+.+. +++++|||||+|.+.++|++||+. |+..|+|+.|.|.++.++
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYGRVGD-VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGSCCSE-EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 999999999999999999999997764 7887775 789999999999999999999997 999999999999998753
No 113
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=125.90 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEE-EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 46789999999999999999999999998774 7888776 899999999999999999999997 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 87653
No 114
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-18 Score=125.06 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.+++++++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR-ADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE-EEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 45679999999999999999999999998774 8888888999999999999999999999996 999999999999987
Q ss_pred CH
Q 024584 252 TP 253 (265)
Q Consensus 252 ~~ 253 (265)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 115
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-19 Score=127.33 Aligned_cols=76 Identities=26% Similarity=0.235 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC--ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-h-CCCccCCeeEEEeec
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-R-DRQNMGRRYVEVFRC 131 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g--iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~-~~~~l~~r~I~v~~~ 131 (265)
..+|||+|||+++||+||+++|++|| |.+|.+ .++ +|+++|||||+|.+.++|++||+ + ++..++||+|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999998 445654 454 79999999999999999999998 5 456799999999776
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.6e-18 Score=120.27 Aligned_cols=78 Identities=8% Similarity=-0.052 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
.....|||+||++.+||++|+++|.++| |+.+.+.. ++|||||+|.++++|++|++ +|+..+.||+|.|..++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 3467899999999999999999999999 55666643 78999999999999999999 999999999999998876
Q ss_pred hhhH
Q 024584 134 QDYY 137 (265)
Q Consensus 134 ~~~~ 137 (265)
.++.
T Consensus 81 ~~~~ 84 (89)
T 2wbr_A 81 NEVQ 84 (89)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 117
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=1e-18 Score=124.49 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC---ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD---IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g---iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
.+|||+|||+++|+++|+++|+.|| +.++.+ .++ +|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 445644 454 89999999999999999999998 99999999999997765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 118
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=124.54 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=74.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+.+|+++|+++|+.||.+.. |.++.++ +|+++|||||+|.+.++|++||+. ||..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIES-IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE-EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 346689999999999999999999999998774 7787775 789999999999999999999996 9999999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 88754
No 119
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=125.36 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+. + .+++++|||||+|.+.++|++|++ +|+..|.|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999 6667553 4 478999999999999999999998 9999999999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
..+..
T Consensus 87 ~~a~~ 91 (102)
T 2cqb_A 87 NLAKP 91 (102)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 77654
No 120
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=121.68 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
.+++.++|||+|||+++++++|+++|+.|| |..+.+. ++ +++++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346788999999999999999999999999 5566554 43 68999999999999999999998 99999999999997
Q ss_pred ec
Q 024584 130 RC 131 (265)
Q Consensus 130 ~~ 131 (265)
.+
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 121
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=122.12 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+.+.++|||+|||+++++++|+++|+.|| |..+.+. ++ +++++|||||+|.+.++|++|++ +|+..|.|+.|.|..
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999 6667554 43 69999999999999999999999 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 82 a~~ 84 (95)
T 2dnz_A 82 VTE 84 (95)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 122
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=125.18 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C--CCCCceeEEEEEeCCHHHHHHHHH-h-CCCccCCeeE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N--KNGRFSGEAFVVFAGPIQVEFALQ-R-DRQNMGRRYV 126 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~--~~g~~kG~afV~F~~~e~A~~Al~-~-~~~~l~~r~I 126 (265)
+...+.++|||+|||+++++++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ + |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456789999999999999999999999999 5567554 4 289999999999999999999999 8 9999999999
Q ss_pred EEeecch
Q 024584 127 EVFRCKR 133 (265)
Q Consensus 127 ~v~~~~~ 133 (265)
.|..+..
T Consensus 90 ~v~~a~~ 96 (107)
T 2cph_A 90 VLEWADS 96 (107)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9987764
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=123.54 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEEC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+.+.+.++|||+|||+++|+++|+++|++++.+. ++.+ .+++++|||||+|.+.++|++||+ +|+..|.++.|.|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~-~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRAR-IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEE-EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEE-EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4457789999999999999999999999874322 3344 589999999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 754
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=124.14 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ce-eEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCee-
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IV-DVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRY- 125 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv-~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~- 125 (265)
+....+.++|||+|||+++++++|+++|+.|| |+ .+.+ .++ +|+++|||||+|.+.++|++|++ +|+..+.++.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 34456789999999999999999999999999 67 7744 454 89999999999999999999999 9999999999
Q ss_pred ---EEEeecc
Q 024584 126 ---VEVFRCK 132 (265)
Q Consensus 126 ---I~v~~~~ 132 (265)
|.|..+.
T Consensus 83 ~~~l~v~~a~ 92 (99)
T 2div_A 83 AKRFKLNYAT 92 (99)
T ss_dssp CEECCEEETT
T ss_pred ceeEEEeecC
Confidence 8886654
No 125
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=128.65 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|+.||.+. .|.|+.+.+|+++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS-EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3567999999999999999999999999876 48888888999999999999999999999997 999999999999998
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.+..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7643
No 126
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=123.96 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
..+.+.++|||+|||+++|+++|+++|+.||.+.+ +.+.+|+++|||||+|.+.++|++||+ +|+..|.++.|.|..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV-PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEEC-CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEE-EECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 34567899999999999999999999999995532 345789999999999999999999999 9999999999999876
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 89 ~~ 90 (101)
T 2fc9_A 89 GP 90 (101)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.8e-18 Score=122.86 Aligned_cols=82 Identities=17% Similarity=0.387 Sum_probs=73.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
.....+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM-VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEE-EEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE-EEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 346678999999999999999999999998774 7888876 69999999999999999999999 57899999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.+++
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 88754
No 128
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=125.12 Aligned_cols=81 Identities=25% Similarity=0.297 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD-IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCC-EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEE-EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 46679999999999999999999999998774 7887774 789999999999999999999986 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 129
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1e-18 Score=120.12 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 177 ~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
+|||+|||+++|+++|+++|++||.+.. |.++.++ +|+++|||||+|.+.++|++|+++|+..|+|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD-AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE-ECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE-EEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 4899999999999999999999998764 7888776 789999999999999999999998999999999999864
No 130
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=126.01 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceec-------eEEEeeC-CCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIED-------KIHIACR-PDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~-------~v~i~~~-~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g 243 (265)
...++|||+|||+++|+++|+++|+.||.+.. .|.|+.+ .+++++|||||+|.+.++|++||+. |+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 46789999999999999999999999997763 3788877 4899999999999999999999997 9999999
Q ss_pred eEEEEEeCCHH
Q 024584 244 RYVELFPSTPD 254 (265)
Q Consensus 244 r~i~V~~~~~~ 254 (265)
+.|.|.++.++
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999998764
No 131
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=125.18 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
+...+.++|||+|||+++++++|+++|+.|| |..+.+. ++ +++++|||||+|.+.++|++||+ +|+..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4456789999999999999999999999999 5566553 44 69999999999999999999999 9999999999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
..+..
T Consensus 88 ~~a~~ 92 (103)
T 2dnm_A 88 QVARY 92 (103)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 77653
No 132
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=124.85 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEE-CC-C-CCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NK-N-GRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~-~~-~-g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
+..+.++|||+|||+++++++|+++|+.|||..+.+. ++ + |+++|||||+|.+.++|++||.+|+..|.++.|.|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 3456799999999999999999999999996667554 44 4 8999999999999999999999999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=126.03 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhc-CCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCe-eCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKD-YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMT-IGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~-l~gr~i~V~ 249 (265)
....+|||+|||+++|+++|+++|+. ||.+.. |.|+.+.+|+++|||||+|.+.++|.+||+. |+.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~-v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG-GKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE-EEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE-EEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45678999999999999999999999 997764 8888888999999999999999999999997 9999 999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88654
No 134
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=5.4e-18 Score=120.23 Aligned_cols=79 Identities=18% Similarity=0.418 Sum_probs=72.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
..++|||+|||+++|+++|+++|+.||.+.. |.++.+. +++++|+|||+|.+.++|++|+..|+..|+|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNR-VTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEE-EEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE-EEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999998774 8888876 8999999999999999999999449999999999999886
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 135
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=6.2e-18 Score=125.90 Aligned_cols=83 Identities=25% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
.....+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34457789999999999999999999999999 666654 454 89999999999999999999998 999999999999
Q ss_pred Eeecchh
Q 024584 128 VFRCKRQ 134 (265)
Q Consensus 128 v~~~~~~ 134 (265)
|..+...
T Consensus 89 V~~a~~~ 95 (115)
T 2dgo_A 89 TNWATRK 95 (115)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9877643
No 136
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=126.34 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=75.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+.|+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVD-CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEE-EEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 356789999999999999999999999998774 7888775 78999999999999999999999999999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87654
No 137
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.8e-18 Score=119.97 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.++|||+|||+++++++|+++|++|| |..+.+ .+ .+|+++|||||+|.+.++|++|++ +|+..++|+.|.|..
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999 556644 44 589999999999999999999997 999999999999976
Q ss_pred c
Q 024584 131 C 131 (265)
Q Consensus 131 ~ 131 (265)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=125.27 Aligned_cols=72 Identities=21% Similarity=0.169 Sum_probs=64.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
++|||+|||+++|+++|+++|+.|| |..+.+... ++|||||+|.+.++|++|++ +|+..+.|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 5899999999999999999999999 666766533 78999999999999999999 999999999999987764
No 139
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=123.44 Aligned_cols=80 Identities=24% Similarity=0.182 Sum_probs=69.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+...+.++|||+|||+++|+++|+++|+.|| |..+.+ ..+++++|||||+|.+.++|++||+ +|+..|.++.|.|..
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999 445554 4466789999999999999999997 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 96 a~~ 98 (109)
T 1x4a_A 96 PRS 98 (109)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 140
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=125.51 Aligned_cols=81 Identities=12% Similarity=0.346 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-C------CCeeCCe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-D------KMTIGSR 244 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~------g~~l~gr 244 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|.+||+. | +..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKY-VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE-EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 46679999999999999999999999998764 7888776 689999999999999999999997 8 9999999
Q ss_pred EEEEEeCCHH
Q 024584 245 YVELFPSTPD 254 (265)
Q Consensus 245 ~i~V~~~~~~ 254 (265)
.|.|.++.++
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998764
No 141
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1.1e-17 Score=125.10 Aligned_cols=79 Identities=11% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS-AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEE-EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999999999999999999997774 7887775 789999999999999999999997 9999999999998
Q ss_pred eC
Q 024584 250 PS 251 (265)
Q Consensus 250 ~~ 251 (265)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 142
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=123.02 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC--C--CceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--G--KATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~--g--~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
..++|||+|||+++|+++|+++|+.||.+.. |.|+.+.. | +++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKS-CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE-EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5578999999999999999999999998764 77776553 3 8999999999999999999997 999999999999
Q ss_pred EeCCHH
Q 024584 249 FPSTPD 254 (265)
Q Consensus 249 ~~~~~~ 254 (265)
.++.++
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998764
No 143
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=125.45 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=73.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD-VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE-EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 46689999999999999999999999998774 7787776 589999999999999999999996 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8753
No 144
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-17 Score=125.02 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
+...+.++|||+|||+++++++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|++|++ +|+..|+|+.|.|.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4557789999999999999999999999999 667755 46689999999999999999999999 99999999999998
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7764
No 145
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=123.94 Aligned_cols=80 Identities=18% Similarity=0.391 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCC--CCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPD--GKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~--g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.|| +. .|.|+.++. ++++|||||+|.+.++|++||.+|+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE-EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce-EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 55 488887763 8999999999999999999994499999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8765
No 146
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=121.38 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=64.5
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCe-eEEE
Q 024584 58 FPVVRLRGLPFNC------TDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRR-YVEV 128 (265)
Q Consensus 58 ~~~vfV~nLp~~~------te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r-~I~v 128 (265)
+++|||+|||+++ ++++|+++|++|| |..+.+.+.+|+++|||||+|.+.++|++|++ +|+..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4689999999999 7899999999999 55676666789999999999999999999999 999999999 8876
No 147
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=124.10 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++.+. +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN-IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45689999999999999999999999998774 7887776 689999999999999999999996 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8653
No 148
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=123.19 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCe--eCCeEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMT--IGSRYVEL 248 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~--l~gr~i~V 248 (265)
..++.+|||+|||+++|+++|+++|++||.+.. |.++. .+|+|||+|.+.++|.+|++. |+.. |+||+|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~-v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISY-VVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE-EEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 346789999999999999999999999998874 66663 468999999999999999997 7664 89999999
Q ss_pred EeCCHHH
Q 024584 249 FPSTPDE 255 (265)
Q Consensus 249 ~~~~~~e 255 (265)
.+++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998765
No 149
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=123.18 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
++...+.++|||+|||+++++++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++|++ +|+..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456788999999999999999999999999 556644 44 479999999999999999999998 999999999999
Q ss_pred Eeecch
Q 024584 128 VFRCKR 133 (265)
Q Consensus 128 v~~~~~ 133 (265)
|..+..
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 977653
No 150
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=6.6e-18 Score=120.58 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++. .+++++|||||+|.+.++|++|++. |+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLY-ADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEE-EEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999998774 77776 4889999999999999999999997 999999999999988
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.+.
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 151
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=122.03 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeE----E
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRY----V 246 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~----i 246 (265)
...++|||+|||+++|+++|+++|+.||.+...|.++.++ +++++|||||+|.+.++|++||+. |+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4668999999999999999999999999766348888876 889999999999999999999997 999999999 9
Q ss_pred EEEeCCH
Q 024584 247 ELFPSTP 253 (265)
Q Consensus 247 ~V~~~~~ 253 (265)
.|.++++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998865
No 152
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-18 Score=125.29 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE-VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCE-EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE-EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46789999999999999999999999998764 7887765 788999999999999999999986 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 7654
No 153
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=126.32 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. +.+|+++|||||+|.+.++|++|++ +|+..|.|+.|.|..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35678999999999999999999999999 6677554 6689999999999999999999998 9999999999999877
Q ss_pred chh
Q 024584 132 KRQ 134 (265)
Q Consensus 132 ~~~ 134 (265)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 154
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=125.80 Aligned_cols=85 Identities=13% Similarity=0.291 Sum_probs=75.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
..++|||+|||+.+|+++|+++|+.||.+.. |.++.+. +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE-EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE-EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 5578999999999999999999999997764 7777775 889999999999999999999986 999999999999999
Q ss_pred CHHHHHHH
Q 024584 252 TPDEARRA 259 (265)
Q Consensus 252 ~~~e~~~~ 259 (265)
.++.....
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 87765443
No 155
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.4e-18 Score=129.02 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=72.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
...+.+.++|||+|||+++++++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++||+ +|+..|.|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44567789999999999999999999999999 6667554 53 78999999999999999999999 999999999999
Q ss_pred Eeecch
Q 024584 128 VFRCKR 133 (265)
Q Consensus 128 v~~~~~ 133 (265)
|..+..
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 976653
No 156
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-18 Score=122.38 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
.+.++|||+|||+++++++|+++|+.|| |..+ .+. + .+|+++|||||+|.+.++|++|++ +|+..|.|+.|.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 5678999999999999999999999999 5566 554 5 589999999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 654
No 157
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=123.59 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999 556654 454 69999999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 653
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=125.34 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||.+|+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRD-VRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEE-EEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeE-EEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 35579999999999999999999999998774 7888776 589999999999999999999944999999999999998
Q ss_pred CHHHH
Q 024584 252 TPDEA 256 (265)
Q Consensus 252 ~~~e~ 256 (265)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 77653
No 159
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=121.95 Aligned_cols=78 Identities=27% Similarity=0.473 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||. |.++.+.+++++|||||+|.+.++|++||+. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~----v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATF----IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSE----EECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCE----EEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 46789999999999999999999999984 4666677899999999999999999999996 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 160
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-18 Score=124.69 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ce--------eEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCcc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IV--------DVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM 121 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv--------~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l 121 (265)
...+.++|||+|||+++|+++|+++|+.|| |. .+.+ .+ .+|+++|||||+|.+.++|++||+ +|+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 346789999999999999999999999999 44 3654 45 589999999999999999999999 999999
Q ss_pred CCeeEEEeecch
Q 024584 122 GRRYVEVFRCKR 133 (265)
Q Consensus 122 ~~r~I~v~~~~~ 133 (265)
.|+.|.|..+..
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999977654
No 161
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=125.79 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-C--CCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D--KMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~--g~~l~gr~i~V~ 249 (265)
....+|||+|||+++|+++|+++|++||.+.+ |.|+.+ +|||||+|.+.++|++|++. + +..|.||+|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~-v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN-LLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE-EEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46689999999999999999999999998874 777753 68999999999999999994 4 589999999999
Q ss_pred eCCHHHH
Q 024584 250 PSTPDEA 256 (265)
Q Consensus 250 ~~~~~e~ 256 (265)
++.++++
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9887653
No 162
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=125.23 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+....+.++|||||+|.+.++|++|++ +|+..|+|+.|.|..
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456789999999999999999999999999 66776654345699999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 163
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=120.75 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
....+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++||+ ++..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEE
Confidence 3456788999999999999999999999999 556644 454 79999999999999999999999 5778999999997
Q ss_pred ecchh
Q 024584 130 RCKRQ 134 (265)
Q Consensus 130 ~~~~~ 134 (265)
.+..+
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 76643
No 164
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=123.98 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+ .|.|+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE-AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE-EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE-EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 346789999999999999999999999998774 8888776 689999999999999999999998 77 8999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.++
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98653
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3.4e-18 Score=117.40 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=64.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 60 VVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 60 ~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
+|||+|||+++++++|+++|+.+| |..+.+ .++ +|+++|||||+|.+.++|++|+++|+..++|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999 666744 454 799999999999999999999999999999999999653
No 166
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=123.19 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hC------CCccC
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RD------RQNMG 122 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~------~~~l~ 122 (265)
+...+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ +| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456788999999999999999999999999 5566553 5 378999999999999999999999 99 99999
Q ss_pred CeeEEEeecch
Q 024584 123 RRYVEVFRCKR 133 (265)
Q Consensus 123 ~r~I~v~~~~~ 133 (265)
|+.|.|..+..
T Consensus 90 g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 GRQLKVDLAVT 100 (111)
T ss_dssp SCEEEEECCCC
T ss_pred CEEEEEEECCC
Confidence 99999977654
No 167
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=121.09 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+.+|+++|+++|+.||.+.. |.|+.+..+ ++|||||+|.+.++|++||+. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS-CKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEE-EEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeE-EEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 46689999999999999999999999998774 788877544 789999999999999999996 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.+.
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 168
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=120.97 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIV----QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
....+|||+|||+++|+++|+ ++|++||.+.. |.|+.+..+ +|||||+|.+.++|++||+. |+..|+||.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~-v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS-VELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE-EEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE-EEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999998774 888877765 88999999999999999996 99999999999
Q ss_pred EEeCCHH
Q 024584 248 LFPSTPD 254 (265)
Q Consensus 248 V~~~~~~ 254 (265)
|.++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9988653
No 169
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=3.3e-17 Score=123.66 Aligned_cols=83 Identities=20% Similarity=0.367 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
.....++|||+|||+.+|+++|+++|+.||.+. .|.|+.+.+|+++|||||+|.+.++|++|++. |+..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCS-EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999776 48888888999999999999999999999996 9999999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.+.
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 88653
No 170
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=5.8e-18 Score=125.03 Aligned_cols=82 Identities=11% Similarity=0.309 Sum_probs=71.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.+. +|+++|||||+|.+.++|++||+.++..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKE-CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEE-EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEE-EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 346689999999999999999999999998874 8888776 69999999999999999999999966999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 171
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=125.69 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.++.+.. .++|||||+|.+.++|++|++. |+..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD-VEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC-EEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE-EEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999998774 88887754 4899999999999999999997 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 172
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=8.4e-18 Score=124.18 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+.+|+++|+++|+.||.+.. |.++.+. +|+++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN-IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEE-EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 46689999999999999999999999998774 7887775 789999999999999999999996 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8653
No 173
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=2.6e-18 Score=124.91 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCC-e
Q 024584 56 PSFPVVRLRGLPF------NCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR-R 124 (265)
Q Consensus 56 ~~~~~vfV~nLp~------~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~-r 124 (265)
..+++|||+|||+ ++++++|+++|++|| |..+.+ .++ +|+++|||||+|.+.++|++|++ +|+..|.| |
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 999999999999999 666654 454 69999999999999999999998 99999999 9
Q ss_pred eEEEeecchhh
Q 024584 125 YVEVFRCKRQD 135 (265)
Q Consensus 125 ~I~v~~~~~~~ 135 (265)
.|.|..+...+
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99998886543
No 174
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=8.3e-18 Score=121.16 Aligned_cols=79 Identities=20% Similarity=0.386 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
+.++|||+|||+++++++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++|++ +|+..++|+.|.|..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 468999999999999999999999999 5567554 43 79999999999999999999998 99999999999998887
Q ss_pred hhh
Q 024584 133 RQD 135 (265)
Q Consensus 133 ~~~ 135 (265)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 175
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=1e-17 Score=139.69 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCC--ceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYK--IIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g--~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
...+|||+|||+++|+++|+++|+.|| .+. .|.|+.++ +|+++|||||+|.+.++|++||+. |++.|.||.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~-~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE-EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999999999 666 48888886 899999999999999999999997 9999999999999
Q ss_pred eCCHHHHHHH
Q 024584 250 PSTPDEARRA 259 (265)
Q Consensus 250 ~~~~~e~~~~ 259 (265)
++.+..+...
T Consensus 146 ~a~~~~~~~~ 155 (229)
T 3q2s_C 146 PVNKQFLSQF 155 (229)
T ss_dssp ECCHHHHHHH
T ss_pred ECCCCccchh
Confidence 9998876544
No 176
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=7.2e-18 Score=121.85 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCc--cCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQN--MGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~--l~~r~I~v~~ 130 (265)
.+++.+|||+|||+++|+++|+++|++|| |..+.++. +||+|||+|.+.++|.+|++ +++.. +.||+|.|..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 35688999999999999999999999999 56676653 57899999999999999999 88775 7899999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 7654
No 177
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=130.95 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC---ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD---IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g---iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..++|||+|||+++|+++|+++|+.|| |.++.+ .| .+|+++|||||+|.+.++|++||+ +|+..|+||.|.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 445644 46 489999999999999999999999 899999999999998
Q ss_pred cchhhh
Q 024584 131 CKRQDY 136 (265)
Q Consensus 131 ~~~~~~ 136 (265)
+..+..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 876544
No 178
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=122.38 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC-----e
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR-----R 124 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~-----r 124 (265)
+++....++|||+|||+++|+++|+++|+.|| |..+.+... |||||+|.+.++|++||+ +|+..|.+ +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 34456789999999999999999999999999 666765532 899999999999999999 99999999 9
Q ss_pred eEEEeecch
Q 024584 125 YVEVFRCKR 133 (265)
Q Consensus 125 ~I~v~~~~~ 133 (265)
.|.|..+..
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999987664
No 179
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.6e-18 Score=121.47 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=69.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH----HhhcCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCe
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDIC----KFFAGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRR 124 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~----~~F~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r 124 (265)
+.+..+.++|||+|||+++++++|+ ++|+.|| |.++.+. ++.+ +|||||+|.+.++|++|++ +|+..|+||
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3445678899999999999999999 9999999 6667664 4444 8999999999999999999 999999999
Q ss_pred eEEEeecc
Q 024584 125 YVEVFRCK 132 (265)
Q Consensus 125 ~I~v~~~~ 132 (265)
.|.|..+.
T Consensus 81 ~l~V~~a~ 88 (96)
T 2dgx_A 81 KILVSLAT 88 (96)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99997765
No 180
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-18 Score=124.44 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hC--CCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RD--RQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~--~~~l~~r~I~v~~ 130 (265)
+.+.++|||+|||+++||+||+++|++|| |.++.++. .+|||||+|.+.++|++|++ ++ +..|.||+|.|..
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 46789999999999999999999999999 66776664 27999999999999999998 75 4789999999977
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6543
No 181
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=125.08 Aligned_cols=81 Identities=26% Similarity=0.371 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEE-CC--CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NK--NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~-~~--~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
......++|||+|||+++++++|+++|+.|||..+.+. +. +|+++|||||+|.+.++|++||.+|+..|+|+.|.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 34567899999999999999999999999995566553 43 7999999999999999999999999999999999997
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 7653
No 182
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=125.86 Aligned_cols=80 Identities=19% Similarity=0.395 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC--CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP--DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.|| +. .|.|+.+. +|+++|||||+|.+.++|.+||.+|+..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EE-EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 4678999999999999999999999999 65 48888775 79999999999999999999994499999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8653
No 183
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=123.33 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
....+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+++++|||||+|.+.++|++||+ +++ .|.++.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456789999999999999999999999999 6667654 4 379999999999999999999999 777 899999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
..+..
T Consensus 91 ~~a~~ 95 (116)
T 2cqd_A 91 NLAYL 95 (116)
T ss_dssp EESTT
T ss_pred EEccc
Confidence 87653
No 184
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=127.81 Aligned_cols=83 Identities=20% Similarity=0.375 Sum_probs=74.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
.....++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIES-VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEE-EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999999999999999999998774 7787775 689999999999999999999997 999999999999
Q ss_pred EeCCHH
Q 024584 249 FPSTPD 254 (265)
Q Consensus 249 ~~~~~~ 254 (265)
.++.++
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998764
No 185
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=5.1e-18 Score=129.14 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=73.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD-VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEE-EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456789999999999999999999999998774 7888775 689999999999999999999997 9999999999998
Q ss_pred eCCH
Q 024584 250 PSTP 253 (265)
Q Consensus 250 ~~~~ 253 (265)
++.+
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 8765
No 186
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=120.11 Aligned_cols=76 Identities=12% Similarity=0.176 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-h--CCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-R--DRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~--~~~~l~~r~I~v~~ 130 (265)
.++.++|||+|||+++++++|+++|++|| |.++.++. .+|||||+|.+.++|++|++ + ++..+.||+|.|..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 46688999999999999999999999999 66676654 27999999999999999998 5 56789999999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 7643
No 187
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=7e-18 Score=123.71 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCee---CCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTI---GSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l---~gr~i~ 247 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+. |+..+ .|+.|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE-LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCE-EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46689999999999999999999999997764 7888776 689999999999999999999996 99888 899999
Q ss_pred EEeCCHH
Q 024584 248 LFPSTPD 254 (265)
Q Consensus 248 V~~~~~~ 254 (265)
|.++.++
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9998764
No 188
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.2e-17 Score=118.50 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++|+.+|+..+.|+.|.|..+..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 357999999999999999999999999 556644 454 89999999999999999999999999999999999977653
No 189
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-18 Score=127.20 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEEC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
+.+.++|||+|||+++|+++|+++|+.|| +..+++.+ .+|+++|||||+|.+.++|++||++|+..|.|+.|.|..+.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35678999999999999999999999999 44433344 47899999999999999999999999999999999997765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 190
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=124.37 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCe-eE
Q 024584 56 PSFPVVRLRGLPFNC------TDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRR-YV 126 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~------te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r-~I 126 (265)
...++|||+|||+.+ |+++|+++|+.|| |..+.+...+|+++|||||+|.+.++|++|++ +|+..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 447899999999999 7899999999999 66676666689999999999999999999999 999999999 99
Q ss_pred EEeecc
Q 024584 127 EVFRCK 132 (265)
Q Consensus 127 ~v~~~~ 132 (265)
.|..+.
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 997765
No 191
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=125.38 Aligned_cols=82 Identities=23% Similarity=0.395 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.++ +++++|||||+|.+.++|++||+.|+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTD-CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSE-EEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 35589999999999999999999999997764 7888775 689999999999999999999999999999999999998
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.+++
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7653
No 192
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.8e-18 Score=122.77 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
...+.++|||+|||+++++++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++||+.|+..|.|+.|.|..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 456789999999999999999999999999 556644 45 479999999999999999999999999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 653
No 193
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=121.09 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC----CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK----NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~----~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
.+.++|||+|||+++++++|+++|+.|| |..+.+. +. +++++|||||+|.+.++|++|++ +|+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999 5566443 32 44899999999999999999999 9999999999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
..+..
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 77653
No 194
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=122.42 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC--CCCceeEEEEEECCHHHHHHHHHh--CCCeeCCeEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP--DGKATGEAYVEFVSVEEAKRAMCK--DKMTIGSRYVEL 248 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~s~~~A~~Al~~--~g~~l~gr~i~V 248 (265)
....+|||+|||+.+|+++|+++|+.||.+.. |.|+.+. +++++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKT-VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE-EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEE-EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 46689999999999999999999999998774 7888773 889999999999999999999985 899999999999
Q ss_pred EeCCHH
Q 024584 249 FPSTPD 254 (265)
Q Consensus 249 ~~~~~~ 254 (265)
.++.++
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998765
No 195
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-18 Score=119.85 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+.+.++|||+|||+++++++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +|+..+.++.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35688999999999999999999999999 5566554 5 479999999999999999999999 999999999988754
No 196
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=2e-17 Score=123.68 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=70.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
.....+.++|||+|||+++++++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +|+..|+|+.|.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999999999999999999999 6667554 4 478999999999999999999999 999999999999
Q ss_pred Eeec
Q 024584 128 VFRC 131 (265)
Q Consensus 128 v~~~ 131 (265)
|..+
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9654
No 197
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=1.7e-18 Score=118.88 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeC
Q 024584 177 ILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPS 251 (265)
Q Consensus 177 ~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~ 251 (265)
+|||+|||+++|+++|+++|++||.+.. |.++.++ +|+++|||||+|.+.++|++||+.++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES-IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE-ECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999998764 7787775 689999999999999999999999999999999999764
No 198
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=118.78 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CC-CceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DG-KATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g-~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...+|||+|||+++|+++|+++|+.||.+.. |.++.+. ++ +++|+|||+|.+.++|++|++. ||..|+|+.|.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM-IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEE-EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE-EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4568999999999999999999999998774 7777666 33 3899999999999999999997 99999999999998
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
+.+
T Consensus 82 a~~ 84 (88)
T 4a8x_A 82 VLA 84 (88)
T ss_dssp ECC
T ss_pred CCC
Confidence 764
No 199
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=129.49 Aligned_cols=81 Identities=12% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceec-eEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCC----eeCCeE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIED-KIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKM----TIGSRY 245 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~-~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~----~l~gr~ 245 (265)
....+|||+|||+++|+++|+++|+.||.+.. .|+|+.++ +|+++|||||+|.+. +|.+||.. |+. .|+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46679999999999999999999999997753 27888888 899999999999999 99999997 999 999999
Q ss_pred EEEEeCCHH
Q 024584 246 VELFPSTPD 254 (265)
Q Consensus 246 i~V~~~~~~ 254 (265)
|.|.++.+.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999988764
No 200
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-18 Score=117.36 Aligned_cols=74 Identities=11% Similarity=0.324 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
++|||+|||+++|+++|+++|++||.+.. |.++.++ +|+++|+|||+|.+.++|++|++. + ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE-CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC-EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 36999999999999999999999998764 7888776 689999999999999999999998 7 9999999999875
No 201
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=122.58 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HhhcCCC-ceeEEEE-CC----CCCceeEEEEEeCCHHHHHHHHH-hCCCccCC
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDIC---KFFAGLD-IVDVLLV-NK----NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR 123 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~---~~F~~~g-iv~v~~~-~~----~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~ 123 (265)
.....++|||+|||+++++++|+ ++|+.|| |.++.+. +. .++++|||||+|.+.++|++||+ +|+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34568899999999999999999 9999999 6667654 33 23677999999999999999999 89999999
Q ss_pred eeEEEeecchh
Q 024584 124 RYVEVFRCKRQ 134 (265)
Q Consensus 124 r~I~v~~~~~~ 134 (265)
+.|.|..+..+
T Consensus 91 r~l~V~~a~~k 101 (111)
T 2cpi_A 91 RTLKASLGTTK 101 (111)
T ss_dssp EEEEEESCCCC
T ss_pred EEEEEEecccc
Confidence 99999776643
No 202
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-18 Score=120.46 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=70.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...+|||+|||+++|+++|+++|+.||.+.. |.++.++ +++++|||||+|.+.++|++|++. |+..|.|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS-TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEE-EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5679999999999999999999999998774 7787775 789999999999999999999997 999999999988654
Q ss_pred C
Q 024584 252 T 252 (265)
Q Consensus 252 ~ 252 (265)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 203
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.7e-18 Score=122.74 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
.+.++|||+|||+++++++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++|++ +|+..+.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568999999999999999999999999 666654 45 489999999999999999999998 9999999999999888
Q ss_pred chhhh
Q 024584 132 KRQDY 136 (265)
Q Consensus 132 ~~~~~ 136 (265)
.....
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 76543
No 204
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=119.78 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|.. +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD-IDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346689999999999999999999999998764 66643 466899999999999999999986 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.+.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8753
No 205
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.3e-17 Score=122.35 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCcc---CCeeE
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNM---GRRYV 126 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l---~~r~I 126 (265)
+..+.++|||+|||+++++++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++|++ +|+..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456789999999999999999999999999 6677554 44 69999999999999999999998 999987 89999
Q ss_pred EEeecch
Q 024584 127 EVFRCKR 133 (265)
Q Consensus 127 ~v~~~~~ 133 (265)
.|..+..
T Consensus 89 ~v~~a~~ 95 (106)
T 2dgp_A 89 QVKPADS 95 (106)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9977754
No 206
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.3e-17 Score=123.29 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCC-ceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYK-IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g-~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.|| .+.. +.+.. .+++|||||+|.+.++|++||+. ||..|+||.|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~-v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTF-SSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE-EECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE-EEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 6653 55542 35889999999999999999997 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 207
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=119.02 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=70.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.|+ .|.++.+. +++++|||||+|.+.++|++||+. |+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4668999999999999999999999874 36677665 889999999999999999999996 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8764
No 208
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=125.86 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDIC----KFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~----~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
..++.++|||+|||+.+++++|+ ++|++|| |++|.+ ..+++++|||||+|.+.++|++|++ +|+..|.|++|.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i-~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV-DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe-ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 34668899999999999999876 6999999 556654 4678999999999999999999998 999999999999
Q ss_pred Eeecchh
Q 024584 128 VFRCKRQ 134 (265)
Q Consensus 128 v~~~~~~ 134 (265)
|..+..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9887654
No 209
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=120.76 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh---CCCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK---DKMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~---~g~~l~gr~i~V~ 249 (265)
.+.++|||+|||+.+|+++|+++|++||.+.. |.++.+ +|||||+|.+.++|.+|++. ++..|.||+|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~-v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN-ILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE-EEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46689999999999999999999999998774 666643 78999999999999999984 5788999999999
Q ss_pred eCCHHHH
Q 024584 250 PSTPDEA 256 (265)
Q Consensus 250 ~~~~~e~ 256 (265)
++..+++
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987654
No 210
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.5e-18 Score=156.19 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+.+|+++|.++|+.||.|.. |.|+.+. +|+++|||||+|.+.++|.+||.. |+..|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKR-IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE-EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999998774 7888775 899999999999999999999987 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 87643
No 211
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3.8e-17 Score=128.24 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.|+.+. +++++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKK-IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 346789999999999999999999999998774 8888776 689999999999999999999997 9999999999999
Q ss_pred eCCH
Q 024584 250 PSTP 253 (265)
Q Consensus 250 ~~~~ 253 (265)
++.+
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 8865
No 212
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=120.51 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee--------CC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI--------GS 243 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l--------~g 243 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.+.+++++|||||+|.+.++|++||+. ||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEE-EEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999999999999999999998774 8888888999999999999999999999997 99999 68
Q ss_pred eEEEEEeCCH
Q 024584 244 RYVELFPSTP 253 (265)
Q Consensus 244 r~i~V~~~~~ 253 (265)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899998864
No 213
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=120.23 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCC--CccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDR--QNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~--~~l~~r~I~v~~ 130 (265)
.++.++|||+|||+++++++|+++|++|| |..+.++. .+|||||+|.+.++|++|++ +++ ..|.|++|.|..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 46688999999999999999999999999 66676654 37899999999999999998 754 459999999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 7643
No 214
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=6.2e-17 Score=129.74 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
..+.+.++|||+|||+++++++|+++|+.|| |+.+.+ .+.+|+++|||||+|.+.++|++|++ +|+..|.|+.|.|.
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999 666755 46689999999999999999999999 99999999999998
Q ss_pred ecchh
Q 024584 130 RCKRQ 134 (265)
Q Consensus 130 ~~~~~ 134 (265)
.+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 77643
No 215
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=122.73 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHH---HhhhcCCceeceEEEeeCCC----CCceeEEEEEECCHHHHHHHHHh-CCCeeCCe
Q 024584 173 EHTEILKMRGLPFSVKKSEIV---QFFKDYKIIEDKIHIACRPD----GKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR 244 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~---~~F~~~g~~~~~v~i~~~~~----g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr 244 (265)
....+|||+|||+++|+++|+ ++|+.||.+.. |.|+.+.. ++++|||||+|.+.++|++||+. |+..|+||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~-v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK-VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE-EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE-EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 356789999999999999999 99999998774 77776652 36779999999999999999997 99999999
Q ss_pred EEEEEeCCHH
Q 024584 245 YVELFPSTPD 254 (265)
Q Consensus 245 ~i~V~~~~~~ 254 (265)
+|.|.++.++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998765
No 216
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.2e-17 Score=123.57 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=67.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-cee-EEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+++..++|||+|||+++++++|+++|+.|| .+. +.+. .++++|||||+|.+.++|++|++ +|+..|+||.|.|..
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN--TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345688999999999999999999999999 554 4442 23588999999999999999998 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 217
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=1.6e-17 Score=122.71 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++|++ +|+..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 346678999999999999999999999999 556655 35 479999999999999999999999 99999999999998
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 102 ~a~~ 105 (110)
T 1oo0_B 102 WCFV 105 (110)
T ss_dssp ESEE
T ss_pred Eccc
Confidence 7653
No 218
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.8e-18 Score=124.08 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC-----eEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS-----RYV 246 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g-----r~i 246 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.|+.+ |||||+|.+.++|++||+. |++.|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCY-ADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEE-EEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE-EEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999997764 777754 8999999999999999997 9999999 999
Q ss_pred EEEeCCHHH
Q 024584 247 ELFPSTPDE 255 (265)
Q Consensus 247 ~V~~~~~~e 255 (265)
.|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999988754
No 219
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=116.86 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=66.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+++.+.++|||+|||+++++++|+++|+.|| |..+.+. +|||||+|.+.++|++|++ +|+..+.++.|.|..
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456789999999999999999999999999 5567665 6899999999999999998 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 77 a~~ 79 (90)
T 2dnq_A 77 SKN 79 (90)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 220
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.9e-17 Score=123.86 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
..++|||+|||+++|+++|+++|+.||.+.. |.++.++ +|+++|||||+|.+.++|++||++|+..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINR-ITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEE-EEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999998774 7787774 8999999999999999999999559999999999999876
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 221
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-18 Score=117.93 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=64.5
Q ss_pred cEEEEcCCCCCC------CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe-EEE
Q 024584 176 EILKMRGLPFSV------KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR-YVE 247 (265)
Q Consensus 176 ~~l~v~nLp~~~------t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr-~i~ 247 (265)
++|||+|||+.+ |+++|+++|++||.+.. |.++ ..+|+++|||||+|.+.++|.+||+. ||..|+|| +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~-v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN-DFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE-EECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE-EEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 77999999999998774 6666 56889999999999999999999997 99999999 887
Q ss_pred E
Q 024584 248 L 248 (265)
Q Consensus 248 V 248 (265)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 222
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=124.62 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=71.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVEL 248 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V 248 (265)
......+|||+|||+++|+++|+++|+.||.+.. |.++.++ +++++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD-IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEE-EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE-EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999998774 7887774 789999999999999999999987 999999999999
Q ss_pred EeC
Q 024584 249 FPS 251 (265)
Q Consensus 249 ~~~ 251 (265)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 864
No 223
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=121.62 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCC------CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe-E
Q 024584 174 HTEILKMRGLPFSV------KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR-Y 245 (265)
Q Consensus 174 ~~~~l~v~nLp~~~------t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr-~ 245 (265)
..++|||+|||+.+ |+++|+++|+.||.+.. |.|+ ..+|+++|||||+|.+.++|.+||.. ||..|+|| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~-v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN-DFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE-EECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE-EEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46799999999999 78999999999998774 6776 56889999999999999999999997 99999999 9
Q ss_pred EEEEeCCH
Q 024584 246 VELFPSTP 253 (265)
Q Consensus 246 i~V~~~~~ 253 (265)
|.|.+++.
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99998764
No 224
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=125.96 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
+...+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|++|++ +|+..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999 556644 454 78999999999999999999999 9999999999999
Q ss_pred eecch
Q 024584 129 FRCKR 133 (265)
Q Consensus 129 ~~~~~ 133 (265)
..+..
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 87654
No 225
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=1.5e-17 Score=125.77 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.|+.+. +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN-IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEE-EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45689999999999999999999999998764 7887776 889999999999999999999986 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8643
No 226
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=120.09 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCcc--------CC
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM--------GR 123 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l--------~~ 123 (265)
..+.++|||+|||+++++++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|++||+ +|+..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45678999999999999999999999999 666644 56799999999999999999999999 999999 57
Q ss_pred eeEEEeecc
Q 024584 124 RYVEVFRCK 132 (265)
Q Consensus 124 r~I~v~~~~ 132 (265)
++|.|..+.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 778886654
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=124.23 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-C--CCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D--KMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~--g~~l~gr~i~V~ 249 (265)
.+..+|||+|||+++|+++|+++|++||.+.. |.|+.+ +|||||+|.+.++|.+|++. + +..|.||+|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~-v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN-LLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE-EEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 46689999999999999999999999998774 777753 78999999999999999995 5 578999999999
Q ss_pred eCCHHHH
Q 024584 250 PSTPDEA 256 (265)
Q Consensus 250 ~~~~~e~ 256 (265)
++.++++
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987654
No 228
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=114.35 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-h-CCCccCCeeEEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-R-DRQNMGRRYVEV 128 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~-~~~~l~~r~I~v 128 (265)
++...+.++|||+|||+++++++|+++|+.|| |..+.+.. ++|||||+|.+.++|++|++ + ++..+.|++|.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 34456789999999999999999999999999 55676653 57999999999999999999 7 999999999999
Q ss_pred eec
Q 024584 129 FRC 131 (265)
Q Consensus 129 ~~~ 131 (265)
..+
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 229
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.4e-17 Score=121.24 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=73.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++.+.+|+++|||||+|.+.++|++||+ ++..|+|+.|.|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKE-VKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE-EEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 35679999999999999999999999998874 888888899999999999999999999999 9999999999988776
Q ss_pred HH
Q 024584 253 PD 254 (265)
Q Consensus 253 ~~ 254 (265)
++
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 230
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=122.98 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=66.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hC--CCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RD--RQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~--~~~l~~r~I~v~ 129 (265)
..++.++|||+|||+++||++|+++|++|| |.++.++. .+|||||+|.+.++|++|++ ++ +..|.||+|.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345688999999999999999999999999 67776653 37999999999999999998 66 468999999998
Q ss_pred ecchh
Q 024584 130 RCKRQ 134 (265)
Q Consensus 130 ~~~~~ 134 (265)
.+..+
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 77644
No 231
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=118.29 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
..+..++|||+|||+++++++|+++|+.||.+.+.++ .++++|||||+|.+.++|++|++ +|+..|+|+.|.|..+.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLT--WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEE--EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEE--cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3456789999999999999999999999995544333 24788999999999999999998 99999999999997765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=122.10 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
...++|||+|||+++++++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++||.+|+..|+|+.|.|..+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 4568999999999999999999999999 6667554 54 6899999999999999999999999999999999998776
Q ss_pred hhh
Q 024584 133 RQD 135 (265)
Q Consensus 133 ~~~ 135 (265)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 233
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.5e-17 Score=124.57 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+ .+. +|.++|||||+|.+.++|++||+ +|+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 346688999999999999999999999999 556755 454 89999999999999999999998 99999999999998
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 98 ~a~~ 101 (126)
T 3ex7_B 98 WCFV 101 (126)
T ss_dssp ESEE
T ss_pred EecC
Confidence 7754
No 234
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=125.10 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
.....+.++|||+|||+++++++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +|+..|+|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999 5566553 4 479999999999999999999998 999999999999
Q ss_pred Eee
Q 024584 128 VFR 130 (265)
Q Consensus 128 v~~ 130 (265)
|..
T Consensus 137 v~~ 139 (140)
T 2ku7_A 137 VNL 139 (140)
T ss_dssp EEC
T ss_pred EEe
Confidence 964
No 235
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=127.18 Aligned_cols=78 Identities=19% Similarity=0.119 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-cee--EEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCC----ccCCe
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVD--VLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQ----NMGRR 124 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~--v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~----~l~~r 124 (265)
..+..+|||+|||+++||++|+++|+.|| |.. |.+ .++ +|+++|||||+|.+. +|.+|+. +|+. .|.||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 46678999999999999999999999999 533 644 465 899999999999999 9999999 9999 99999
Q ss_pred eEEEeecch
Q 024584 125 YVEVFRCKR 133 (265)
Q Consensus 125 ~I~v~~~~~ 133 (265)
.|.|..+..
T Consensus 99 ~l~V~~a~~ 107 (131)
T 2m2b_A 99 TINVEFAKG 107 (131)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999977653
No 236
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=120.40 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hC--CCccCCeeEEEe
Q 024584 55 PPSFPVVRLRGLPFN-CTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RD--RQNMGRRYVEVF 129 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~-~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~--~~~l~~r~I~v~ 129 (265)
.++.++|||+|||++ ++++||+++|++|| |.++.++ +++|||||+|.+.++|++|++ +| +..|.||.|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456889999999998 99999999999999 7778765 357999999999999999998 64 556999999998
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 7654
No 237
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-17 Score=116.73 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+.. ++|||||+|.+.++|++|++ +|+..|.|+.|.|..+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 446788999999999999999999999999 66676653 47899999999999999998 9999999999999776
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 238
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=114.09 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=64.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
++|||+|||+++++++|+++|+++| +..+.+. ++ +|+++|||||+|.+.++|++|++ ++ ..++|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999 6567554 44 79999999999999999999999 76 9999999999654
No 239
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.9e-18 Score=120.04 Aligned_cols=79 Identities=15% Similarity=0.327 Sum_probs=68.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
++|||+|||+++|+++|+++|+.||.+.. |.++.++ +|+++|||||+|.+.+ |.+|+.. |+..|+|+.|.|.++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN-VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE-EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE-EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 47999999999999999999999997764 7888776 6899999999999999 9999997 99999999999999987
Q ss_pred HHH
Q 024584 254 DEA 256 (265)
Q Consensus 254 ~e~ 256 (265)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=119.31 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCC--ccCCeeEEEe
Q 024584 55 PPSFPVVRLRGLPF-NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQ--NMGRRYVEVF 129 (265)
Q Consensus 55 ~~~~~~vfV~nLp~-~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~--~l~~r~I~v~ 129 (265)
+.+.++|||+|||+ ++|++||+++|++|| |.++.++. .+|||||+|.+.++|++|++ +|+. .|.||+|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 45789999999999 999999999999999 66776653 35899999999999999998 7754 5999999997
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7763
No 241
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3.5e-17 Score=120.82 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=66.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
.+.+.++|||+|||+++|+++|+++|+.|| |..+.+. +. +|+++|||||+|.+.++|++||+.++..|+|+.|.|..
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 346789999999999999999999999999 5567554 44 69999999999999999999999556899999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 242
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.5e-17 Score=127.57 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 52 FPPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
++...+.++|||+|||+++|+++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++||+ +|+..|.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556788999999999999999999999999 6677554 43 79999999999999999999998 999999999999
Q ss_pred Eeecch
Q 024584 128 VFRCKR 133 (265)
Q Consensus 128 v~~~~~ 133 (265)
|..+..
T Consensus 121 V~~a~~ 126 (135)
T 2lea_A 121 VQMARY 126 (135)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 977653
No 243
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=118.91 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
...+.++|||+|||+++++++|+++|+.||.+.++ ..+|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34668899999999999999999999999844433 5688999999999999999999999 99999999999997765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 90 ~ 90 (96)
T 1fjc_A 90 E 90 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 244
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-18 Score=124.76 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|+.||.+.. +.+....+|+++|||||+|.+.++|++||++|+..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35679999999999999999999999997765 33444447899999999999999999999889999999999999887
Q ss_pred HH
Q 024584 253 PD 254 (265)
Q Consensus 253 ~~ 254 (265)
++
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 245
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=8.8e-18 Score=115.30 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEee
Q 024584 60 VVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFR 130 (265)
Q Consensus 60 ~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~ 130 (265)
+|||+|||+++++++|+++|+.+| |..+.+ .+ .+|+++|||||+|.+.++|++|+++++..+.|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 599999999999999999999999 556644 34 369999999999999999999999999999999998865
No 246
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=115.87 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CC-CceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NG-RFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g-~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
...++|||+|||+++|+++|+++|+.|| |..+.+ .+. ++ +++|||||+|.+.++|++|++ +|+..++|+.|.|..
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3468999999999999999999999999 556644 343 34 489999999999999999999 999999999999976
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
+.
T Consensus 82 a~ 83 (88)
T 4a8x_A 82 VL 83 (88)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 247
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8e-17 Score=115.04 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+...+.++|||+|||+++++++|+++|+.|| |..+.+. ++||||+|.+.++|++|++ +|+..|.|+.|.|..
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4457789999999999999999999999999 6667654 3599999999999999998 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 79 a~~ 81 (92)
T 2dgt_A 79 STS 81 (92)
T ss_dssp SSC
T ss_pred ccC
Confidence 753
No 248
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=121.48 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+.++..|+|+.|.|..+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34568999999999999999999999999 6677554 5 4799999999999999999999999999999999999776
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 249
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=121.52 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE--EEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV--LLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v--~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.++|||+|||+++|+++|+++|+.|| |..+ .+...+|+++|||||+|.+.++|++||+ +|+..|.|+.|.|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45689999999999999999999999999 4221 1112289999999999999999999998 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 102 a~~ 104 (115)
T 2cpx_A 102 GKN 104 (115)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 250
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=120.53 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCc-eeceEEEe-eCC-CCCceeEEEEEECCHHHHHHHHHh-C--CCeeCCeEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKI-IEDKIHIA-CRP-DGKATGEAYVEFVSVEEAKRAMCK-D--KMTIGSRYVE 247 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~-~~~~v~i~-~~~-~g~~~G~afV~F~s~~~A~~Al~~-~--g~~l~gr~i~ 247 (265)
..++|||+|||+++|+++|+++|+.||. +.. |.++ .+. +|+++|||||+|.+.++|.+||+. | +..|+|+.|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~-v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLD-VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE-EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE-EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 5679999999999999999999999996 664 6776 444 679999999999999999999996 6 5999999999
Q ss_pred EEeCCHHH
Q 024584 248 LFPSTPDE 255 (265)
Q Consensus 248 V~~~~~~e 255 (265)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99987653
No 251
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=114.92 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC--CeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG--RRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~--~r~I~v~~ 130 (265)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+.. .+|||||+|.+.++|++|++ +|+..|. ++.|.|..
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK----GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS----SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC----CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35678999999999999999999999999 55565543 27899999999999999999 9999999 99999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 252
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=2e-17 Score=119.26 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDIC----KFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYV 126 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~----~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I 126 (265)
+..++.++|||+|||+++++++|+ ++|+.|| |..+.+. .+|+++|||||+|.+.++|++|++ +|+..+.|+.|
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 345678999999999999999999 9999999 5555543 467889999999999999999998 99999999999
Q ss_pred EEeecchh
Q 024584 127 EVFRCKRQ 134 (265)
Q Consensus 127 ~v~~~~~~ 134 (265)
.|..+...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99877643
No 253
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=1.1e-16 Score=125.67 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++|+++|+++|+.|| |..|.+ .++ +++++|||||+|.+.++|++||+ +|+..|.++.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999999999 556754 454 79999999999999999999999 99999999999998
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 7754
No 254
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=118.54 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=65.6
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-C--CCeeCCeEEEE
Q 024584 173 EHTEILKMRGLPF-SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D--KMTIGSRYVEL 248 (265)
Q Consensus 173 ~~~~~l~v~nLp~-~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~--g~~l~gr~i~V 248 (265)
.+..+|||+|||+ ++|++||+++|++||.+.. |.|+.+ +|||||+|.+.++|.+|++. | +..|.||+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~-v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN-HLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE-EEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE-EEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999998874 777643 47999999999999999995 5 45699999999
Q ss_pred EeCCH
Q 024584 249 FPSTP 253 (265)
Q Consensus 249 ~~~~~ 253 (265)
.++.+
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98874
No 255
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=121.19 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|+.||.+...+..+...+++++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4668999999999999999999999999653211111122789999999999999999999997 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 256
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=117.30 Aligned_cols=77 Identities=27% Similarity=0.472 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|+.||.+. ++ ..+++++|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~----~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR----LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC----CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE----Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 4678999999999999999999999998554 22 45789999999999999999999996 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 257
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.4e-17 Score=117.91 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
+...++|||+|||+++++++|+++|+.|| |..+.+. +++|||||+|.+.++|++|+. +|+..++|+.|.|..+.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 45578999999999999999999999999 6667665 567999999999999999998 99999999999997654
No 258
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=1.4e-16 Score=118.56 Aligned_cols=80 Identities=25% Similarity=0.485 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.++.+ +.++|||||+|.+.++|.+|++. ||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ-IRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE-EEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999998774 777754 56689999999999999999996 999999999999999
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8743
No 259
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=8e-17 Score=117.53 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+. +|||||+|.+.++|++|++ +|+..|.++.|.|..+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 346678999999999999999999999999 5566554 5699999999999999999 9999999999999877
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 260
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.2e-17 Score=118.37 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=66.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-C--CCeeCCeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-D--KMTIGSRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~--g~~l~gr~i~V~ 249 (265)
.+..+|||+|||+++|+++|+++|++||.+.. |.++. .+|||||+|.+.++|.+|++. | +..|.||+|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~-v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICY-VMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE-EEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE-EEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999998774 66663 368999999999999999985 4 456999999999
Q ss_pred eCCHHH
Q 024584 250 PSTPDE 255 (265)
Q Consensus 250 ~~~~~e 255 (265)
++..++
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997654
No 261
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=1.9e-17 Score=120.63 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
..+.++|||+|||+++++++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|++|++ ++..|+|+.|.|..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 35678999999999999999999999999 556644 56799999999999999999999999 9999999999997765
Q ss_pred hh
Q 024584 133 RQ 134 (265)
Q Consensus 133 ~~ 134 (265)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 262
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1e-16 Score=115.74 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 52 FPPPPSFPVVRLRGLPF-NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~-~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
....++.++|||+|||+ ++++++|+++|+.|| |..+.+ ++|||||+|.+.++|++|++ +|+..++|+.|.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557789999999998 999999999999999 556665 37999999999999999999 9999999999999
Q ss_pred eecc
Q 024584 129 FRCK 132 (265)
Q Consensus 129 ~~~~ 132 (265)
..+.
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 7765
No 263
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=122.58 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIV----QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
.+..+|||+|||+.+++++|+ ++|++||.+.. |.+. .+++++|||||+|.+.++|.+|+.. ||..|.||+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~-v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILD-IVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE-EEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE-EEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456799999999999999876 69999997763 5553 4788999999999999999999997 99999999999
Q ss_pred EEeCCHHH
Q 024584 248 LFPSTPDE 255 (265)
Q Consensus 248 V~~~~~~e 255 (265)
|.++..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987654
No 264
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=115.76 Aligned_cols=77 Identities=9% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|||+.+|+++|+++|+.||.+. +.++. ++++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP--LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4567999999999999999999999999775 34443 47889999999999999999987 999999999999988
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 265
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.9e-17 Score=114.90 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=66.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.+.++|||+|||+++|+++|+++|+.|| |..+.+. ++||||+|.+.++|++|++ +|+..|.|+.|.|..
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999 5566654 3599999999999999999 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 266
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=8.8e-17 Score=134.05 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC---ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD---IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g---iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..++|||+|||+++||++|+++|+.|| |++|.| .++ +|+++|||||+|.+.++|++||+ +|+..|.+|.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 555644 564 89999999999999999999999 999999999999998
Q ss_pred cchhhhH
Q 024584 131 CKRQDYY 137 (265)
Q Consensus 131 ~~~~~~~ 137 (265)
+......
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 8765543
No 267
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=7.4e-17 Score=121.61 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 57 SFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 57 ~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
+.++|||+|||+++|+++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++||++|+..|+|+.|.|..+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999 556654 45 48999999999999999999999999999999999997664
No 268
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1e-16 Score=113.61 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecch
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~ 133 (265)
...++|||+|||+++++++|+++|+++.|..+.+. +++|||||+|.+.++|++|++ +|+..++|+.|.|..+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46789999999999999999999999966566653 788999999999999999999 999999999999977653
No 269
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=114.00 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++ +|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLE-CDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEE-EEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE-EEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 46689999999999999999999999998764 6665 57999999999999999986 999999999999988
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 270
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-17 Score=116.68 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=65.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCc-eeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCC-CccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDI-VDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDR-QNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~gi-v~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~-~~l~~r~I~v~~ 130 (265)
.+.+.++|||+|||+++|+++|+++|+.||. +..+.+ .++|||||+|.+.++|++|++ +|+ ..|+|+.|.|..
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4467889999999999999999999999994 653222 357899999999999999998 999 999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 80 a~~ 82 (93)
T 2cqh_A 80 SVS 82 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 271
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.4e-16 Score=126.22 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++++++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|++||+ +|+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 556654 45 489999999999999999999998 99999999999998
Q ss_pred ecchh
Q 024584 130 RCKRQ 134 (265)
Q Consensus 130 ~~~~~ 134 (265)
.+...
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 77543
No 272
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=124.41 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceece-----EEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK-----IHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYV 246 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~-----v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i 246 (265)
....+|||+|||+++|+++|+++|+.||.+... +.+....+|+++|||||+|.+.++|.+||.. ||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 456899999999999999999999999966532 1122234789999999999999999999996 9999999999
Q ss_pred EEEeCCH
Q 024584 247 ELFPSTP 253 (265)
Q Consensus 247 ~V~~~~~ 253 (265)
.|.++.+
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998854
No 273
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=125.71 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-------EEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-------LLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRY 125 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-------~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~ 125 (265)
..+.++|||+|||+++|+++|+++|+.|| |..+ +....+|+++|||||+|.+.++|.+||+ +|+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 46689999999999999999999999999 5442 2223589999999999999999999999 9999999999
Q ss_pred EEEeecch
Q 024584 126 VEVFRCKR 133 (265)
Q Consensus 126 I~v~~~~~ 133 (265)
|.|..+..
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99987653
No 274
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.4e-17 Score=120.68 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
.++.++|||+|||+++++++|+++|+.|| |..+.+. .++|||||+|.+.++|++|++ +|+..|.|+.|.|..+.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34578999999999999999999999999 5556554 367899999999999999998 99999999999998776
Q ss_pred hh
Q 024584 133 RQ 134 (265)
Q Consensus 133 ~~ 134 (265)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 275
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.2e-16 Score=117.77 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=67.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
......+|||+|||+++|+++|+++|+.||.+.. |.+. +|||||+|.+.++|++|++. ||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKE-VKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCE-EEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE-EEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999997764 6665 68999999999999999997 9999999999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.+.
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 88764
No 276
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=114.29 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeC--CeEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIG--SRYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~--gr~i~V~ 249 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.+..+ +|||||+|.+.++|++|++. |+..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRT-IDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE-EEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45679999999999999999999999998764 666532 78999999999999999996 999999 9999999
Q ss_pred eCCHH
Q 024584 250 PSTPD 254 (265)
Q Consensus 250 ~~~~~ 254 (265)
++.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98753
No 277
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.5e-17 Score=116.89 Aligned_cols=75 Identities=11% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.+. +++|||||+|.+.++|++|+.. |+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILD-FKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSE-EEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEE-EEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 35679999999999999999999999997764 6766 5678999999999999999987 999999999999887
Q ss_pred CH
Q 024584 252 TP 253 (265)
Q Consensus 252 ~~ 253 (265)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 278
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.8e-17 Score=115.28 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=66.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CC-CeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DK-MTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g-~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+...+.+. ++|||||+|.+.++|++||+. |+ ..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3567899999999999999999999999733334442 478999999999999999996 99 999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8764
No 279
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=2.3e-16 Score=113.91 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 172 MEHTEILKMRGLPF-SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 172 ~~~~~~l~v~nLp~-~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
....++|||+|||+ ++|+++|+++|+.||.+.. |.+ ++|||||+|.+.++|.+|++. |+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ-INI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE-EEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE-EEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999998 9999999999999997764 666 278999999999999999996 9999999999999
Q ss_pred eCCH
Q 024584 250 PSTP 253 (265)
Q Consensus 250 ~~~~ 253 (265)
++.+
T Consensus 91 ~a~~ 94 (97)
T 2xnq_A 91 VSSS 94 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8864
No 280
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.6e-16 Score=117.13 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=66.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....+.++|||+|||+++|+++|+++|+.|| |..+.+. +|||||+|.+.++|++|++ +|+..++|+.|.|..
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999 6667665 6899999999999999998 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 653
No 281
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=1.1e-16 Score=125.82 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
...+.++|||+|||+++|+++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++||+ +|+..|+|++|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999999999 5567554 53 89999999999999999999998 99999999999998
Q ss_pred ecch
Q 024584 130 RCKR 133 (265)
Q Consensus 130 ~~~~ 133 (265)
.+..
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7653
No 282
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=115.63 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+.+|+++|+++|+.||.+.. |.+.. ++|||||+|.+.++|++|++. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE-VFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE-EEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE-EEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346689999999999999999999999997764 77763 378999999999999999987 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8764
No 283
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=3.3e-17 Score=118.07 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIV----QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
.+..+|||+|||+++|+++|+ ++|+.||.+.. |.+. .+|+++|||||+|.+.++|.+|++. ||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~-v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD-ILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE-EECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE-EEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 466799999999999999999 99999997764 5555 3577889999999999999999997 99999999999
Q ss_pred EEeCCHHH
Q 024584 248 LFPSTPDE 255 (265)
Q Consensus 248 V~~~~~~e 255 (265)
|.++.++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987653
No 284
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=128.24 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+.+|+++|+++|+.||.+. .|.|+.+.+++++|||||+|.+.++|.+||+. |+..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCS-EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999776 48888888899999999999999999999997 99999999999998
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 285
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=3.3e-16 Score=126.70 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.++.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTD-CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE-EEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 346789999999999999999999999998774 7788776 68999999999999999999999999999999999998
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+...+
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 286
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-16 Score=111.44 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.++ ++||||+|.+.++|.+|++. |+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIE-CDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE-EEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 346789999999999999999999999997764 6665 34999999999999999987 99999999999999
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8754
No 287
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-16 Score=112.82 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=66.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhhcC--CceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 171 QMEHTEILKMRGLPFSVKKSEIVQFFKDY--KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~~t~~dL~~~F~~~--g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
.....++|||+|||+++|+++|+++|+.| |.+.. |.+ ++|||||+|.+.++|.+||.. |+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~-~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER-VKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE-EEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE-EEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 76653 444 367999999999999999996 99999999999
Q ss_pred EEeCCHH
Q 024584 248 LFPSTPD 254 (265)
Q Consensus 248 V~~~~~~ 254 (265)
|.++.++
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9988764
No 288
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=113.64 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=65.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECC-CCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNK-NGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~-~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~ 131 (265)
......+|||+|||+++|+++|+++|+.|| |.+| +.+. +|+ ||||+|.+.++|++||++|+..|+|+.|.|..+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 345678999999999999999999999999 5556 5554 555 999999999999999999999999999999655
Q ss_pred c
Q 024584 132 K 132 (265)
Q Consensus 132 ~ 132 (265)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.8e-17 Score=118.49 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=66.4
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh---CCCeeCCeEEE
Q 024584 172 MEHTEILKMRGLPFS-VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK---DKMTIGSRYVE 247 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~-~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~---~g~~l~gr~i~ 247 (265)
..+..+|||+|||++ +|+++|+++|++||.+.. |.|+ +++|||||+|.+.++|++|++. ++..|.||+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~-v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN-YILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE-EEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE-EEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999998 999999999999997774 6665 3578999999999999999984 45679999999
Q ss_pred EEeCCHH
Q 024584 248 LFPSTPD 254 (265)
Q Consensus 248 V~~~~~~ 254 (265)
|.++.++
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9988643
No 290
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=2.4e-16 Score=114.92 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=66.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++ +|||||+|.+.++|++||+. |+..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~-v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLER-VKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE-EEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 45679999999999999999999999998764 6665 45999999999999999997 999999999999998
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7643
No 291
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=3.7e-16 Score=128.78 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
.+..+|||+|||+++|+++|+++|+.||.+.. |.|+.+. +++++|||||+|.+.++|.+||+. |+..+.|+.|.|..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE-EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35579999999999999999999999998774 8888876 799999999999999999999997 99999999999988
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 76544
No 292
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=116.56 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+.+|+++|+++|+.||.+.. |.|+.+ +|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~-v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEE-EEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35679999999999999999999999997764 777654 78999999999999999987 999999999999988
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 293
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=4e-17 Score=116.06 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=65.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-CC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecchh
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-NK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCKRQ 134 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~~~ 134 (265)
++|||+|||+++++++|+++|+.+| |..+.+. ++ +|+++|||||+|.+.+ |++|+. +|+..++|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999 6677554 44 6999999999999999 999999 9999999999999887654
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=109.00 Aligned_cols=74 Identities=16% Similarity=0.278 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHH-h-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC-K-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~-~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+++|+++|+++|+.||.+.. |.++. ++|+|||+|.+.++|.+|++ + |+..|+|++|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~-~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT-ITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE-EEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE-EEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45679999999999999999999999998764 77764 47899999999999999999 5 99999999999988
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
+.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 295
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-16 Score=114.54 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPF-NCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~-~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..++.++|||+|||+ ++++++|+++|+.|| |..+.+ ++|||||+|.+.++|++|++ +|+..+.|+.|.|..
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 346788999999999 999999999999999 666765 37899999999999999999 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 653
No 296
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.9e-16 Score=116.44 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=69.0
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECC----HHH----HHHHHH--h-CCC
Q 024584 176 EILKMRGL----PFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVS----VEE----AKRAMC--K-DKM 239 (265)
Q Consensus 176 ~~l~v~nL----p~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s----~~~----A~~Al~--~-~g~ 239 (265)
..|||+|| |+++++++|+++|++||.|.. +.++.|+ +|+++|||||+|.+ +++ |.+|+. . |+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~-~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH-FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE-EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 999999999999999998774 7888888 89999999999996 433 889988 5 999
Q ss_pred eeCCeEEEEEeCCHHHH
Q 024584 240 TIGSRYVELFPSTPDEA 256 (265)
Q Consensus 240 ~l~gr~i~V~~~~~~e~ 256 (265)
.|+||.|+|.+..-...
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999998775444
No 297
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=3.6e-16 Score=110.73 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=65.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
...+|||+|||+++|+++|+++|++| .+.. +.+. +++|||||+|.+.++|++|++. |+..++||+|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~-~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY-CYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC-EEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE-EEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45689999999999999999999999 5553 6663 6889999999999999999997 9999999999999876
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 298
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=7e-16 Score=121.28 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
.++|||+|||+++|+++|+++|+.||.+.. |.++.++ +|+++|+|||+|.+.++|.+|++. |+..++|++|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES-CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE-EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEE-EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999998774 7888877 899999999999999999999996 9999999999999876
Q ss_pred HH
Q 024584 253 PD 254 (265)
Q Consensus 253 ~~ 254 (265)
+.
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 299
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=9.1e-17 Score=116.72 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPD 254 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~ 254 (265)
++|||+|||+++|+++|+++|+.||.+. .|.++.+ ++|||||+|.+.++|++|++. |+..|+|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR-TVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS-EEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 3799999999999999999999999776 4777765 789999999999999999997 999999999999998765
Q ss_pred H
Q 024584 255 E 255 (265)
Q Consensus 255 e 255 (265)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 300
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.3e-16 Score=111.23 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCC--C-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGL--D-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~--g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.++|||+|||+++|+++|+++|+.| | |..+.+ .+|||||+|.+.++|++|++ +|+..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4568899999999999999999999999 7 444543 36899999999999999999 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 86 a~~ 88 (99)
T 2cpd_A 86 AKP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 301
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=116.50 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEE-CC-C---CCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLV-NK-N---GRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~-~~-~---g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
....++|||+|||+++|+++|+++|+.||.+.+.++ +. + |+++|||||+|.+.++|++||+ ++ .++|+.|.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 456789999999999999999999999995545443 33 3 7999999999999999999998 62 256666655
Q ss_pred e
Q 024584 129 F 129 (265)
Q Consensus 129 ~ 129 (265)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 4
No 302
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=115.89 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
....++|||+|||+++++++|+++|+.|| |..+.+... +|||||+|.+.++|++|++ +|+..|.|+.|.|..+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 35688999999999999999999999999 556766543 7899999999999999997 99999999999997765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 98 ~ 98 (109)
T 1x4g_A 98 E 98 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 303
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=115.83 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC--ceeEEEE--CC-CCCceeEEEEEeCCHHHHHHHHH-hC--CCccCCeeE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD--IVDVLLV--NK-NGRFSGEAFVVFAGPIQVEFALQ-RD--RQNMGRRYV 126 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g--iv~v~~~--~~-~g~~kG~afV~F~~~e~A~~Al~-~~--~~~l~~r~I 126 (265)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. +. +|+++|||||+|.+.++|++|++ +| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45688999999999999999999999997 4456554 33 67999999999999999999999 85 589999999
Q ss_pred EEeecch
Q 024584 127 EVFRCKR 133 (265)
Q Consensus 127 ~v~~~~~ 133 (265)
.|..+..
T Consensus 85 ~V~~a~~ 91 (109)
T 2dis_A 85 AVDWAEP 91 (109)
T ss_dssp EEEESCS
T ss_pred EEEEcCC
Confidence 9987754
No 304
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-18 Score=125.21 Aligned_cols=83 Identities=24% Similarity=0.307 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceece-------EEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDK-------IHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~-------v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g 243 (265)
....+|||+|||+++|+++|+++|+.||.+... |.|+.++ +++++|||||+|.+.++|++||+. |+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 356789999999999999999999999977531 6677764 789999999999999999999996 9999999
Q ss_pred eEEEEEeCCHHH
Q 024584 244 RYVELFPSTPDE 255 (265)
Q Consensus 244 r~i~V~~~~~~e 255 (265)
+.|.|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999988765
No 305
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=110.76 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...++|||+|||+++|+++|+++|+.||.+.. |.++ ++||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIE-CDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEE-EEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE-EEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46678999999999999999999999998764 6665 34999999999999999997 999999999999998
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 306
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=110.03 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=60.0
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHhhcCCC--ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 56 PSFPV-VRLRGLPFNCTDID----ICKFFAGLD--IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 56 ~~~~~-vfV~nLp~~~te~d----L~~~F~~~g--iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
++..+ |||+|||+.+++++ |+++|+.|| |++| +| |+|||+|.+.++|++|++ ||+..|.||+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 44445 99999999999998 558999994 6676 34 999999999999999998 999999999999
Q ss_pred Eeecc
Q 024584 128 VFRCK 132 (265)
Q Consensus 128 v~~~~ 132 (265)
|..+.
T Consensus 78 v~~A~ 82 (96)
T 2diu_A 78 VSFTP 82 (96)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 97665
No 307
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=3.6e-16 Score=115.43 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 55 PPSFPVVRLRGLPFN-CTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~-~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
....++|||+|||++ +++++|+++|+.|| |..+.+ ++|||||+|.+.++|++|++ +|+..|.|+.|.|..+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345689999999999 99999999999999 666766 67999999999999999997 9999999999999776
Q ss_pred c
Q 024584 132 K 132 (265)
Q Consensus 132 ~ 132 (265)
.
T Consensus 98 ~ 98 (110)
T 1wf1_A 98 G 98 (110)
T ss_dssp C
T ss_pred C
Confidence 5
No 308
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2.2e-16 Score=117.59 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCee-----EE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRY-----VE 127 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~-----I~ 127 (265)
....++|||+|||+++++++|+++|+.|| |..+.+... |||||+|.+.++|++||+ +|+..|+|+. |.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 35679999999999999999999999999 556665432 899999999999999999 9999999998 66
Q ss_pred Eeecc
Q 024584 128 VFRCK 132 (265)
Q Consensus 128 v~~~~ 132 (265)
|....
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65544
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=9.8e-16 Score=124.44 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
..++|||+|||+++|+++|+++|++||.+.. |.|+.+.+++++|||||+|.+.++|++||+..+..|+||.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEE-EEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEE-EEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 3579999999999999999999999998774 889988899999999999999999999999866799999999987653
No 310
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=5.4e-16 Score=110.15 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=60.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 252 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~ 252 (265)
....+|||+|||+++|+++|+++|++||.+.. |.|+.+ ++|||||+|.+.++|+++ ......+.|+.|.|..+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~-v~i~~~----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVD-VFIPKP----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEE-EECCSS----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEE-EEEeeC----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcC
Confidence 46689999999999999999999999998774 777653 789999999999999842 222334569999999998
Q ss_pred HHH
Q 024584 253 PDE 255 (265)
Q Consensus 253 ~~e 255 (265)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 765
No 311
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=7.2e-16 Score=113.78 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFS-VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~-~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+. +|+++|+++|+.||.+.. |.+ ++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAG-CSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE-EEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE-EEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35579999999999 999999999999997764 666 578999999999999999986 99999999999999
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
+.+
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=110.59 Aligned_cols=77 Identities=16% Similarity=0.336 Sum_probs=66.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
...+|||+|||+++|+++|+++|+.||.+.. | +....+++ ||||+|.+.++|.+||++|+..|+|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS-V-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEE-E-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE-E-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 4569999999999999999999999998774 4 33333554 99999999999999999999999999999988765
Q ss_pred HH
Q 024584 254 DE 255 (265)
Q Consensus 254 ~e 255 (265)
++
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 313
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3e-16 Score=116.12 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
..++|||+|||+.+|+++|+++|++||.+.. |.|+ +++|||||+|.+.++|++||+. |+..|+||+|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR-VLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE-EECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE-EEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999997763 6654 3678999999999999999997 9999999999998875
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 314
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.3e-16 Score=121.04 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCH
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTP 253 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~ 253 (265)
++|||+|||+++|+++|+++|+.||.+. .|.++.+++++++|+|||+|.+.++|.+|++. |+..+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA-NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE-EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE-EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4799999999999999999999999877 48898888899999999999999999999976 99999999999988754
No 315
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=5.5e-16 Score=122.20 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=72.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
+.++|||+|||+++|+++|+++|+.||.+.. |.++.++ +|+++|+|||+|.+.++|.+|++. |+..++|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT-CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE-EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4578999999999999999999999998764 7777765 789999999999999999999986 999999999999987
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 81 ~~~ 83 (168)
T 1b7f_A 81 RPG 83 (168)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 316
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-17 Score=123.57 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-cee--------EEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccC
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVD--------VLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG 122 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~--------v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~ 122 (265)
..+.++|||+|||+++++++|+++|+.|| |.. +.+ .+ .+|+++|||||+|.+.++|++|++ +|+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35678999999999999999999999999 555 534 35 479999999999999999999999 9999999
Q ss_pred CeeEEEeecchh
Q 024584 123 RRYVEVFRCKRQ 134 (265)
Q Consensus 123 ~r~I~v~~~~~~ 134 (265)
|+.|.|..+..+
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999776644
No 317
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=2.8e-15 Score=109.76 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCC-----CCCHHHHHHhhhcCCceeceEEEeeCC--CCCceeEEEEEECCHHHHHHHHHh-CCCeeCCe
Q 024584 173 EHTEILKMRGLPF-----SVKKSEIVQFFKDYKIIEDKIHIACRP--DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSR 244 (265)
Q Consensus 173 ~~~~~l~v~nLp~-----~~t~~dL~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr 244 (265)
.++.+|+|+||.. +.+++||+++|++||.+.. |.|+.++ +++++|+|||+|.+.++|.+|++. ||+.|+||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~-v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK-CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE-EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE-EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3567999999963 2478999999999998874 7888775 368999999999999999999997 99999999
Q ss_pred EEEEEeCCHHHHH
Q 024584 245 YVELFPSTPDEAR 257 (265)
Q Consensus 245 ~i~V~~~~~~e~~ 257 (265)
.|.|.++.+..+.
T Consensus 85 ~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 85 VVKACFYNLDKFR 97 (105)
T ss_dssp ECEEEECCHHHHH
T ss_pred EEEEEEcCHHHhh
Confidence 9999999986654
No 318
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.6e-16 Score=110.40 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=66.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeE-EEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDV-LLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEV 128 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v-~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v 128 (265)
++....++|||+|||+++++++|+++|+.|| |..+ .+. ++. .|.|||+|.+.++|++|++ +|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999 5566 343 322 2449999999999999998 9999999999999
Q ss_pred eecchh
Q 024584 129 FRCKRQ 134 (265)
Q Consensus 129 ~~~~~~ 134 (265)
..+..+
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 877644
No 319
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=6.7e-16 Score=120.27 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
....+.++|||+|||+++|+++|+++|+.|| |..+.+... ++|||||+|.+.++|++|++ +|+..|.|++|.|..
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999 556765432 68999999999999999999 999999999999977
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 320
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=6.3e-16 Score=109.82 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCc--cCCeeEEEee
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQN--MGRRYVEVFR 130 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~--l~~r~I~v~~ 130 (265)
.+.+.++|||+|||+++||++|+++|++|| |.++.+.. .++|||||+|.+.++|++ +++.. +.++.|.|..
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEE
Confidence 346788999999999999999999999999 66676543 388999999999999984 33444 5699999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 7643
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=1.2e-16 Score=119.00 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=63.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeE-----EE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRY-----VE 247 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~-----i~ 247 (265)
..++|||.|||+++|+++|+++|+.||.+.. |.|+.+ |||||+|.+.++|++||+. |++.|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY-ADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEE-EEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE-EEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4578999999999999999999999997764 677654 8999999999999999996 999999988 88
Q ss_pred EEeCCHHH
Q 024584 248 LFPSTPDE 255 (265)
Q Consensus 248 V~~~~~~e 255 (265)
|....+..
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 88877643
No 322
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=108.72 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=64.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...+.++|||+|| ++|+++|+++|+.|| |..+.+ ++++|||||+|.+.++|++||+ +|+..|.|+.|.|..+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i----~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe----cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 3456889999996 999999999999999 556665 3678999999999999999997 9999999999999776
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 85 ~~ 86 (97)
T 1x5p_A 85 RK 86 (97)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 323
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.2e-16 Score=112.83 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=65.5
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPF-SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~-~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
.+..+|||+|||+ ++|+++|+++|+.||.+.. |.+. +|||||+|.+.++|.+||+. |+..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~-v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ-INIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE-EEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE-EEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999999 9999999999999997764 6663 68999999999999999997 99999999999988
Q ss_pred CCHH
Q 024584 251 STPD 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.+.
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 7543
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.3e-15 Score=107.30 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=62.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcC----C-------ceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCee
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDY----K-------IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTI 241 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~----g-------~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l 241 (265)
...++|||+|||+++|+++|+++|++| | .+. .+.+.. ++|||||+|.+.++|.+|+.+|+..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~-~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL-AVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE-EEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce-EEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999 7 444 356553 37999999999999999994499999
Q ss_pred CCeEEEEEe
Q 024584 242 GSRYVELFP 250 (265)
Q Consensus 242 ~gr~i~V~~ 250 (265)
+||.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999963
No 325
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.7e-15 Score=118.76 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCC--eEEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS--RYVELF 249 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V~ 249 (265)
....+|||+|||+.+|+++|+++|++||.+.. |.|..+ +++|||||+|.+.++|++|++. ||..|.| |.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~-V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLK-IITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEE-EEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEE-EEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 35568999999999999999999999998874 666543 3679999999999999999997 9999955 999999
Q ss_pred eCCHHH
Q 024584 250 PSTPDE 255 (265)
Q Consensus 250 ~~~~~e 255 (265)
++.++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998763
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=7e-16 Score=108.73 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCC----C-------ce-eEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccC
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGL----D-------IV-DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMG 122 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~----g-------iv-~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~ 122 (265)
..+.++|||+|||+++++++|+++|+.+ | .+ .+.+. +++|||||+|.+.++|++|+.+|+..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 3567899999999999999999999998 6 33 34443 3479999999999999999999999999
Q ss_pred CeeEEEee
Q 024584 123 RRYVEVFR 130 (265)
Q Consensus 123 ~r~I~v~~ 130 (265)
|+.|.|.+
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999854
No 327
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.7e-16 Score=110.67 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=68.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceE-EEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKI-HIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v-~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
...++|||+|||+++|+++|+++|+.||.+.. | .++.++ .+|.|||+|.+.++|.+||+. |+..|+||+|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~-~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVES-CEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEE-EEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE-EEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999998774 6 466553 234599999999999999996 99999999999999
Q ss_pred CCHHH
Q 024584 251 STPDE 255 (265)
Q Consensus 251 ~~~~e 255 (265)
+.+++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 328
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.4e-15 Score=111.18 Aligned_cols=73 Identities=8% Similarity=0.112 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeE-EEEEeCCHHHHHHHHH-hCCCccCC--eeEEEeecc
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGE-AFVVFAGPIQVEFALQ-RDRQNMGR--RYVEVFRCK 132 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~-afV~F~~~e~A~~Al~-~~~~~l~~--r~I~v~~~~ 132 (265)
-..|||+|||+.+|+++|+++|++|| |.+|.+.++ .|| |||+|.+.++|.+|++ |||..|.+ +.|.|..+.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34578999999999999999999999 666766543 286 9999999999999999 99999987 689997665
Q ss_pred hh
Q 024584 133 RQ 134 (265)
Q Consensus 133 ~~ 134 (265)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 329
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=3.6e-15 Score=112.70 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeE-EEEEECCHHHHHHHHHh-CCCeeCC--eEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE-AYVEFVSVEEAKRAMCK-DKMTIGS--RYVEL 248 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~-afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V 248 (265)
.....|||+||++.+|+++|+++|+.||.+.. |.+..+ .+|+ |||+|.+.++|++|++. ||..|.| ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~-V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLK-IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEE-EEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 35567889999999999999999999998874 666643 3577 99999999999999997 9999987 99999
Q ss_pred EeCCHHH
Q 024584 249 FPSTPDE 255 (265)
Q Consensus 249 ~~~~~~e 255 (265)
.++.++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9997653
No 330
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.7e-15 Score=118.73 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+....+|||+|||+++|+++|+++|++|| |..+.+ .++ +|+++|||||+|.+.++|.+|++ +|+..++|+.|.|..
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999 555644 464 89999999999999999999999 999999999999976
Q ss_pred c
Q 024584 131 C 131 (265)
Q Consensus 131 ~ 131 (265)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 5
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.5e-15 Score=106.96 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|| ++|+++|+++|+.||.+.. |.|. +++|||||+|.+.++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~-v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID-LSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEE-EEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEE-EEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45679999996 8999999999999997764 6663 6788999999999999999987 999999999999988
Q ss_pred CHH
Q 024584 252 TPD 254 (265)
Q Consensus 252 ~~~ 254 (265)
.++
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 332
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.5e-16 Score=114.24 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=62.6
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHhhcCCCce-eEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCcc-----CCeeE
Q 024584 56 PSFPVVRL--RGLPFNCTDIDICKFFAGLDIV-DVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM-----GRRYV 126 (265)
Q Consensus 56 ~~~~~vfV--~nLp~~~te~dL~~~F~~~giv-~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l-----~~r~I 126 (265)
.+..+||| +|||+++++++|+++|++||.+ .+.+.. .+|||||+|.+.++|++|++ +|+..+ .+++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 45788999 6799999999999999999944 455432 37999999999999999999 999988 68888
Q ss_pred EEeecch
Q 024584 127 EVFRCKR 133 (265)
Q Consensus 127 ~v~~~~~ 133 (265)
.|..+..
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 8866553
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=6.5e-15 Score=110.74 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeE-EEEEECCHHHHHHHHHh-CCCeeCC--eEEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGE-AYVEFVSVEEAKRAMCK-DKMTIGS--RYVEL 248 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~-afV~F~s~~~A~~Al~~-~g~~l~g--r~i~V 248 (265)
.....|||.|||+.+|+++|+++|++||.+.. |.|... .|| |||+|.+.++|..|++. ||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~-v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR-IVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEE-EEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34456789999999999999999999998875 666542 286 99999999999999997 9999977 79999
Q ss_pred EeCCHHH
Q 024584 249 FPSTPDE 255 (265)
Q Consensus 249 ~~~~~~e 255 (265)
..+.++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9887653
No 334
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=3.2e-15 Score=121.42 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
.++|||+|||+++|+++|+++|+.|| |..|.+ .+.+|+++|||||+|.+.++|++|++..+..++||.|.|....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 58999999999999999999999999 556755 4678999999999999999999999965678999999997644
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=2e-15 Score=118.34 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCC--eeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR--RYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~--r~I~v~~ 130 (265)
+..-.+|||+|||+.+|+++|+++|++|| |.+|.+..+ +++|||||+|.+.++|++|++ +||..|.+ +.|.|..
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34456789999999999999999999999 566766532 357999999999999999999 99999955 9999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+..+
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7654
No 336
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=2.2e-15 Score=119.78 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeecc
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~~ 132 (265)
...+.++|||+|||+++|+++|+++|+.+|.+.++ ..+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|..+.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 34567899999999999999999999999955544 7789999999999999999999999 99999999999998765
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
.
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 3
No 337
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=113.23 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=54.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC-C---CCceeEEEEEECCHHHHHHHHHh
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP-D---GKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~-~---g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
..++|||+|||+++|+++|+++|++||.+. +.++.+. + |+++|||||+|.+.++|++||+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 557899999999999999999999999776 5565554 3 79999999999999999999985
No 338
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=5.9e-15 Score=121.05 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
...++|||+|||+++|+++|+++|+.|| |..+.+ .+ .+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999 556654 45 489999999999999999999999 9999999999999776
Q ss_pred ch
Q 024584 132 KR 133 (265)
Q Consensus 132 ~~ 133 (265)
..
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 339
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.6e-15 Score=119.42 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEE-C-CCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecc
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLV-N-KNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCK 132 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~-~-~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~ 132 (265)
.+..+|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|+++++..++|++|.|..+.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 3467999999999999999999999999 6667554 5 37999999999999999999999999999999999998775
Q ss_pred h
Q 024584 133 R 133 (265)
Q Consensus 133 ~ 133 (265)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 340
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=5.2e-15 Score=117.21 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC---CeeEEE
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG---RRYVEV 128 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~---~r~I~v 128 (265)
..+.++|||+|||+++|+++|+++|+.|| |..+.+ .+.+|+++|||||+|.+.++|.+|++ +|+..+. +++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34678999999999999999999999999 556644 56789999999999999999999998 9998776 499999
Q ss_pred eec
Q 024584 129 FRC 131 (265)
Q Consensus 129 ~~~ 131 (265)
..+
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 341
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=111.45 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCccEEEE--cCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee-----CCe
Q 024584 173 EHTEILKM--RGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI-----GSR 244 (265)
Q Consensus 173 ~~~~~l~v--~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l-----~gr 244 (265)
.+..+||| +|||+++|+++|+++|++||.+.. |.|+. .+|||||+|.+.++|++|++. ||+.| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~-v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA-LLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE-EECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE-EEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35678999 669999999999999999997764 66542 378999999999999999997 99998 789
Q ss_pred EEEEEeCC
Q 024584 245 YVELFPST 252 (265)
Q Consensus 245 ~i~V~~~~ 252 (265)
+|.|..+.
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 99998764
No 342
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=3.6e-15 Score=135.45 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-EC-CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VN-KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~-~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
..+.++|||+|||+++|+++|.++|+.|| |+.|.| .+ .+|+++|||||+|.+.++|.+||+ ||+..|.|+.|.|..
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 666755 45 489999999999999999999998 999999999999987
Q ss_pred cchh
Q 024584 131 CKRQ 134 (265)
Q Consensus 131 ~~~~ 134 (265)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 7643
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=107.75 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=62.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEeCCH
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTP 253 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V~~~~~ 253 (265)
..++|||+|||+++|+++|+++|+.||.+.. |.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMD-VFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCE-EECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE-EEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4579999999999999999999999997764 777643 789999999999999865333 4566999999998876
Q ss_pred H
Q 024584 254 D 254 (265)
Q Consensus 254 ~ 254 (265)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 344
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=6.7e-15 Score=119.11 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEE-ECC-CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLL-VNK-NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~-~~~-~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
+.+.++|||+|||+++++++|+++|+.|| |..+.+ .++ +|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|..
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46789999999999999999999999999 556644 454 89999999999999999999999 999999999999987
Q ss_pred cch
Q 024584 131 CKR 133 (265)
Q Consensus 131 ~~~ 133 (265)
+..
T Consensus 191 a~~ 193 (198)
T 2yh0_A 191 ASV 193 (198)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 345
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2e-15 Score=106.75 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEeecch
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKR 133 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~~~~~ 133 (265)
.+.++|||+|||+++++++|+++|+.|| |.++.+.. .++|||||+|.+.++|++|+.. ...+.++.|.|..+..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK---PFRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS---SCCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec---CCCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4578999999999999999999999999 66676543 2789999999999999865443 3446899999976653
No 346
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.7e-15 Score=110.64 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=63.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcCCC-ceeE-EEECC-CCCceeEEEEEeCC----HHH----HHHHHH---hCCCc
Q 024584 59 PVVRLRGL----PFNCTDIDICKFFAGLD-IVDV-LLVNK-NGRFSGEAFVVFAG----PIQ----VEFALQ---RDRQN 120 (265)
Q Consensus 59 ~~vfV~nL----p~~~te~dL~~~F~~~g-iv~v-~~~~~-~g~~kG~afV~F~~----~e~----A~~Al~---~~~~~ 120 (265)
..|||+|| |+.+++++|+++|+.|| |.++ ++.|+ +|+++|||||+|.+ +++ |.+|+. +|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999 5666 44576 89999999999996 444 788876 59999
Q ss_pred cCCeeEEEeecch
Q 024584 121 MGRRYVEVFRCKR 133 (265)
Q Consensus 121 l~~r~I~v~~~~~ 133 (265)
|+||.|.|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999976543
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1e-14 Score=109.55 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=66.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeec
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFRC 131 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~~ 131 (265)
++.+.++|||+|| ++|+++|+++|+.|| |..+.+. +++|||||+|.+.++|++|++ +|+..|.|+.|.|..+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 3467899999996 799999999999999 6667664 678999999999999999998 9999999999999877
Q ss_pred chh
Q 024584 132 KRQ 134 (265)
Q Consensus 132 ~~~ 134 (265)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 348
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=7.5e-15 Score=110.99 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeE-EEEEeCCHHHHHHHHH-hCCCccCC--eeEEEe
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGE-AFVVFAGPIQVEFALQ-RDRQNMGR--RYVEVF 129 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~-afV~F~~~e~A~~Al~-~~~~~l~~--r~I~v~ 129 (265)
+..--.|||+|||+.+|+++|+++|+.|| |.+|.+.+. ++|+ |||+|.+.++|++|++ +||..|.+ +.|+|.
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34455677999999999999999999999 666766542 3577 9999999999999999 99999987 889997
Q ss_pred ecchh
Q 024584 130 RCKRQ 134 (265)
Q Consensus 130 ~~~~~ 134 (265)
.+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 76543
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=103.81 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCCHHH----HHHhhhcCC-ceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Q 024584 176 EILKMRGLPFSVKKSE----IVQFFKDYK-IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELF 249 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~d----L~~~F~~~g-~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~ 249 (265)
..|||+|||+++++++ |+++|++|| .+.+ | ++ |+|||+|.+.++|.+|++. ||..|.||+|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~-V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS-I------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE-C------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE-E------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999888 558999995 6643 3 33 9999999999999999997 9999999999998
Q ss_pred eCCH
Q 024584 250 PSTP 253 (265)
Q Consensus 250 ~~~~ 253 (265)
.+..
T Consensus 80 ~A~~ 83 (96)
T 2diu_A 80 FTPK 83 (96)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 8764
No 350
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=9.2e-15 Score=119.79 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=67.1
Q ss_pred CccEEEEcCCC-CCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 174 HTEILKMRGLP-FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 174 ~~~~l~v~nLp-~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
...+|||+||| +++|+++|+++|+.||.+.. |.++.+ .+|||||+|.+.++|++||+. ||..|.||.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~-v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK-VKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE-EEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE-EEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999998774 777654 368999999999999999996 999999999999987
Q ss_pred CH
Q 024584 252 TP 253 (265)
Q Consensus 252 ~~ 253 (265)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=106.44 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCCCCCCeEEEcCCCCCCC-----------HHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCC
Q 024584 53 PPPPSFPVVRLRGLPFNCT-----------DIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQ 119 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~t-----------e~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~ 119 (265)
..+.+.++|+|+||....+ +++|+++|++|| |.++.+.+. .++|||||+|.+.++|++|++ +|+.
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3456789999999944332 689999999999 667766554 489999999999999999998 9999
Q ss_pred ccCCeeEEEeecch
Q 024584 120 NMGRRYVEVFRCKR 133 (265)
Q Consensus 120 ~l~~r~I~v~~~~~ 133 (265)
.|+||+|.|..+..
T Consensus 88 ~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFGGRQITAQAWDG 101 (112)
T ss_dssp EETTEECEEEECCS
T ss_pred EECCcEEEEEEeCC
Confidence 99999999977654
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.4e-14 Score=104.73 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHhhcCCC-ceeEEEE-CC--CCCceeEEEEEeCCHHHHHHHHH-hCCCccCCee
Q 024584 56 PSFPVVRLRGLPF-----NCTDIDICKFFAGLD-IVDVLLV-NK--NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRY 125 (265)
Q Consensus 56 ~~~~~vfV~nLp~-----~~te~dL~~~F~~~g-iv~v~~~-~~--~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~ 125 (265)
.+.++|+|+||.. +-+++||++.|++|| |.++.+. ++ +++++|+|||+|.+.++|.+|++ |||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5678999999963 347899999999999 6667554 44 37899999999999999999998 9999999999
Q ss_pred EEEeecchhhhH
Q 024584 126 VEVFRCKRQDYY 137 (265)
Q Consensus 126 I~v~~~~~~~~~ 137 (265)
|.|..+....+.
T Consensus 86 i~v~~a~~~~f~ 97 (105)
T 2pe8_A 86 VKACFYNLDKFR 97 (105)
T ss_dssp CEEEECCHHHHH
T ss_pred EEEEEcCHHHhh
Confidence 999988776553
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=1.4e-14 Score=108.80 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=66.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~ 251 (265)
....+|||+|| ++|+++|+++|+.||.+.. |.+. +++|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~-v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID-LSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC-EEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE-EEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 6999999999999997764 6664 5788999999999999999987 999999999999998
Q ss_pred CHHH
Q 024584 252 TPDE 255 (265)
Q Consensus 252 ~~~e 255 (265)
.++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 354
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.6e-14 Score=122.36 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=70.2
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIV----QFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
...++|||+|||+++|+++|+ ++|+.||.+.. |.+.. +++++|||||+|.+.++|.+||+. |+..|.||.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~-v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD-ILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE-EEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 467899999999999999977 89999998764 66654 788999999999999999999986 99999999999
Q ss_pred EEeCCHH
Q 024584 248 LFPSTPD 254 (265)
Q Consensus 248 V~~~~~~ 254 (265)
|.++..+
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9988654
No 355
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3.4e-14 Score=103.97 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=70.6
Q ss_pred CccEEEEcCC--CCCCC--------HHHHHHhhhcCCceeceEEEeeCCC---CCceeEEEEEECCHHHHHHHHHh-CCC
Q 024584 174 HTEILKMRGL--PFSVK--------KSEIVQFFKDYKIIEDKIHIACRPD---GKATGEAYVEFVSVEEAKRAMCK-DKM 239 (265)
Q Consensus 174 ~~~~l~v~nL--p~~~t--------~~dL~~~F~~~g~~~~~v~i~~~~~---g~~~G~afV~F~s~~~A~~Al~~-~g~ 239 (265)
++++|.|+|| |.... ++||++.|++||.+.. |.|+.+.. ++++|+|||+|.+.++|.+|++. ||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~-v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS-IEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE-EECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE-EEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5679999999 43443 4799999999998874 78877664 36899999999999999999997 999
Q ss_pred eeCCeEEEEEeCCHHHHH
Q 024584 240 TIGSRYVELFPSTPDEAR 257 (265)
Q Consensus 240 ~l~gr~i~V~~~~~~e~~ 257 (265)
.++||.|.|..++.+...
T Consensus 83 ~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp EETTEECEEEEECHHHHH
T ss_pred EeCCCEEEEEEeCHHHHh
Confidence 999999999999887654
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=102.41 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=65.7
Q ss_pred CCccEEEEcCCCCCCC-----------HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCe
Q 024584 173 EHTEILKMRGLPFSVK-----------KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMT 240 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t-----------~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~ 240 (265)
....+|+|+||....+ +++|+++|++||.+.. |.| .+. .++|||||+|.+.++|.+|+.. ||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~-v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK-LLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE-EEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE-EEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4678999999954433 6899999999998775 555 443 4899999999999999999987 9999
Q ss_pred eCCeEEEEEeCCHH
Q 024584 241 IGSRYVELFPSTPD 254 (265)
Q Consensus 241 l~gr~i~V~~~~~~ 254 (265)
|+||+|.|.++.++
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998764
No 357
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=1.2e-14 Score=106.25 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHhh------------hcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Q 024584 180 MRGLPFSVKKSEIVQFF------------KDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYV 246 (265)
Q Consensus 180 v~nLp~~~t~~dL~~~F------------~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i 246 (265)
+.|||+.+|+++|+++| ++||.+.. |.|+.+.+++++|+|||+|.+.++|.+|+.. ||+.++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~-v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE-MNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE-EEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE-EEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777788888777666 99998874 8888888889999999999999999999997 9999999999
Q ss_pred EEEeCC
Q 024584 247 ELFPST 252 (265)
Q Consensus 247 ~V~~~~ 252 (265)
.|.++.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998763
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=5.3e-14 Score=117.26 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCcc--
Q 024584 55 PPSFPVVRLRGLPFNC---------TDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNM-- 121 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~---------te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l-- 121 (265)
....++|||+|||.++ +|++|+++|++|| |.+|.++ .++|||||+|.+.++|+.|++ |++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~----~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV----ESKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE----GGGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE----CCCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4678999999999998 7999999999999 6667665 368999999999999999998 999999
Q ss_pred ----------CCeeEEEeecchh
Q 024584 122 ----------GRRYVEVFRCKRQ 134 (265)
Q Consensus 122 ----------~~r~I~v~~~~~~ 134 (265)
.|+.|.|..+...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999887643
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=5.8e-14 Score=116.80 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 173 EHTEILKMRGLPF-SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 173 ~~~~~l~v~nLp~-~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....+|||+|||+ ++|+++|+++|+.||.+.. |.++.+. +|||||+|.+.++|++||+. |+..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~-v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR-VKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE-EEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE-EEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4668999999999 9999999999999998764 7787654 68999999999999999986 99999999999998
Q ss_pred CCH
Q 024584 251 STP 253 (265)
Q Consensus 251 ~~~ 253 (265)
+..
T Consensus 107 a~~ 109 (229)
T 2adc_A 107 SKH 109 (229)
T ss_dssp CSC
T ss_pred ecC
Confidence 764
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1.7e-13 Score=102.16 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCC-----CCHHHHHHhhhcCCceeceEEEeeCC-----CCCceeEEEEEECCHHHHHHHHHh-CCCeeC
Q 024584 174 HTEILKMRGLPFS-----VKKSEIVQFFKDYKIIEDKIHIACRP-----DGKATGEAYVEFVSVEEAKRAMCK-DKMTIG 242 (265)
Q Consensus 174 ~~~~l~v~nLp~~-----~t~~dL~~~F~~~g~~~~~v~i~~~~-----~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~ 242 (265)
++.+|+|+||-.. -.++||++.|++||.+.. |.|+.+. +++++|+|||+|.+.++|.+|++. ||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~-v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR-VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEE-EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeE-EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 5679999999422 237999999999998874 7777664 356789999999999999999997 999999
Q ss_pred CeEEEEEeCCHHHHH
Q 024584 243 SRYVELFPSTPDEAR 257 (265)
Q Consensus 243 gr~i~V~~~~~~e~~ 257 (265)
||.|.|.+++...+.
T Consensus 98 GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 98 GRKVVAEVYDQERFD 112 (118)
T ss_dssp TEECEEEEECHHHHH
T ss_pred CcEEEEEEcChHhcc
Confidence 999999999886654
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=6.9e-14 Score=116.58 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCC---------CHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee-
Q 024584 173 EHTEILKMRGLPFSV---------KKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI- 241 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~---------t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l- 241 (265)
....+|||+|||..+ |+++|+++|++||.+.. |.|+. ++|||||+|.+.++|+.|++. |+..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~-v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR-IRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE-EEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE-EEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 456899999999998 79999999999998874 77763 579999999999999999997 99999
Q ss_pred -----------CCeEEEEEeCCHHHH
Q 024584 242 -----------GSRYVELFPSTPDEA 256 (265)
Q Consensus 242 -----------~gr~i~V~~~~~~e~ 256 (265)
.|+.|.|.++....-
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=1.9e-13 Score=115.96 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=66.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 172 MEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 172 ~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
....++|||+|||+++|+++|+++|+.||.+.. |.+. +++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSE-VFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSE-EEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE-EEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356689999999999999999999999998764 6664 3578999999999999999996 99999999999988
Q ss_pred CC
Q 024584 251 ST 252 (265)
Q Consensus 251 ~~ 252 (265)
+.
T Consensus 93 a~ 94 (261)
T 3sde_A 93 AT 94 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=7.8e-14 Score=113.09 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=66.4
Q ss_pred ccEEEEcCCCC-CCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 175 TEILKMRGLPF-SVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 175 ~~~l~v~nLp~-~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
.++|||+|||+ ++|+++|+++|+.||.+.. |.++.+. +|||||+|.+.++|.+||+. |+..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~-v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQR-VKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSE-EECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEE-EEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 9999999999999997764 7777654 67999999999999999996 9999999999999886
Q ss_pred H
Q 024584 253 P 253 (265)
Q Consensus 253 ~ 253 (265)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=4.4e-13 Score=97.96 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=67.8
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHhhcCCC-ceeEEEE-CCC---CCceeEEEEEeCCHHHHHHHHH-hCCC
Q 024584 56 PSFPVVRLRGL--PFNCT--------DIDICKFFAGLD-IVDVLLV-NKN---GRFSGEAFVVFAGPIQVEFALQ-RDRQ 119 (265)
Q Consensus 56 ~~~~~vfV~nL--p~~~t--------e~dL~~~F~~~g-iv~v~~~-~~~---g~~kG~afV~F~~~e~A~~Al~-~~~~ 119 (265)
.+..+|.|+|+ |.+.. ++||++.|++|| |.++.+. +.. ++++|+|||+|.++++|++|++ |||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999999 55554 368999999999 5567554 333 4689999999999999999998 9999
Q ss_pred ccCCeeEEEeecchhhhH
Q 024584 120 NMGRRYVEVFRCKRQDYY 137 (265)
Q Consensus 120 ~l~~r~I~v~~~~~~~~~ 137 (265)
.++||.|.|.......+.
T Consensus 83 ~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp EETTEECEEEEECHHHHH
T ss_pred EeCCCEEEEEEeCHHHHh
Confidence 999999999888766553
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=8.1e-14 Score=101.75 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=59.0
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCC-ceeEEEE-CCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q 024584 63 LRGLPFNCTDIDICKFF------------AGLD-IVDVLLV-NKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVE 127 (265)
Q Consensus 63 V~nLp~~~te~dL~~~F------------~~~g-iv~v~~~-~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~ 127 (265)
+.|||+.+++++|+++| ++|| |.++.+. +.+++++|||||+|.+.++|++|++ +||..++||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66788888998888777 9999 6667654 5678999999999999999999998 999999999999
Q ss_pred Eeec
Q 024584 128 VFRC 131 (265)
Q Consensus 128 v~~~ 131 (265)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8654
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=2.2e-12 Score=95.48 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCccEEEEcCCCCCCC----------HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee
Q 024584 173 EHTEILKMRGLPFSVK----------KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI 241 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t----------~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l 241 (265)
.++.+|.|+||-.... ++||++.|++||.+.. |.|..+ .++|+|||+|.+.++|.+|++. ||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~-v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH-IYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE-EEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE-EEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567999999943322 4689999999998874 777543 2589999999999999999997 99999
Q ss_pred CCeEEEEEeCCHHHHHHHHHh
Q 024584 242 GSRYVELFPSTPDEARRAESR 262 (265)
Q Consensus 242 ~gr~i~V~~~~~~e~~~~~~r 262 (265)
+||.|.|.+++..........
T Consensus 81 ~GR~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 81 AGKMITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp TTEECEEEEECHHHHHHHCGG
T ss_pred CCEEEEEEEEcHHHHHHhCcc
Confidence 999999999998887655433
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=2.7e-12 Score=95.68 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=66.3
Q ss_pred CCCeEEEcCC--CCCC---CHHHHHHhhcCCC-ceeEEEE-CC-----CCCceeEEEEEeCCHHHHHHHHH-hCCCccCC
Q 024584 57 SFPVVRLRGL--PFNC---TDIDICKFFAGLD-IVDVLLV-NK-----NGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGR 123 (265)
Q Consensus 57 ~~~~vfV~nL--p~~~---te~dL~~~F~~~g-iv~v~~~-~~-----~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~ 123 (265)
+.++|+|+|| |.++ -++||++.|++|| |..+.+. +. +++++|++||+|.+.++|.+|++ +||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999999 3232 3689999999999 5566543 32 46788999999999999999999 99999999
Q ss_pred eeEEEeecchhhh
Q 024584 124 RYVEVFRCKRQDY 136 (265)
Q Consensus 124 r~I~v~~~~~~~~ 136 (265)
|.|.|.......+
T Consensus 99 R~i~v~~~~~~~f 111 (118)
T 3ue2_A 99 RKVVAEVYDQERF 111 (118)
T ss_dssp EECEEEEECHHHH
T ss_pred cEEEEEEcChHhc
Confidence 9999988876655
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=7.9e-12 Score=92.53 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCC--CCCC--------CHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC
Q 024584 55 PPSFPVVRLRGL--PFNC--------TDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG 122 (265)
Q Consensus 55 ~~~~~~vfV~nL--p~~~--------te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~ 122 (265)
+.+..+|.|+|| |.+. -++||++.|++|| |.++.+.... .+|+|||+|.+.++|++|++ |||..++
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456789999999 3331 2357899999999 6666654322 58999999999999999999 9999999
Q ss_pred CeeEEEeecchhhhHHHHhh
Q 024584 123 RRYVEVFRCKRQDYYNAVAS 142 (265)
Q Consensus 123 ~r~I~v~~~~~~~~~~~~~~ 142 (265)
||.|.|..+....|......
T Consensus 82 GR~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp TEECEEEEECHHHHHHHCGG
T ss_pred CEEEEEEEEcHHHHHHhCcc
Confidence 99999999888877655433
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=89.62 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 58 FPVVRLRGLP-------FNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 58 ~~~vfV~nLp-------~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
...|.|.-.+ .++++++|+++|++|| |.+|.+. ++++|||||+|.+.++|++|++. ...+.+++|.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEE
Confidence 5577776655 4689999999999999 6677666 57899999999999999999994 334679999997
Q ss_pred ecc
Q 024584 130 RCK 132 (265)
Q Consensus 130 ~~~ 132 (265)
.+.
T Consensus 86 ~a~ 88 (100)
T 2d9o_A 86 WLE 88 (100)
T ss_dssp CSS
T ss_pred Ecc
Confidence 654
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.7e-12 Score=90.70 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=60.4
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Q 024584 175 TEILKMRGLP-------FSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVE 247 (265)
Q Consensus 175 ~~~l~v~nLp-------~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~ 247 (265)
..+|.|.-.+ ..+|+++|+++|++||.+.. |.|+ ++++|||||+|.+.++|+.||+. ...+.+++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~-v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN-LVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE-EEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE-EEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 4567776554 45899999999999998774 6666 47899999999999999999998 3346899999
Q ss_pred EEeCCHH
Q 024584 248 LFPSTPD 254 (265)
Q Consensus 248 V~~~~~~ 254 (265)
|.++.+.
T Consensus 84 V~~a~~~ 90 (100)
T 2d9o_A 84 ISWLEGQ 90 (100)
T ss_dssp EECSSCC
T ss_pred EEEccCC
Confidence 9987643
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.3e-12 Score=109.67 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=60.5
Q ss_pred CCCccEEEEcC--CCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCee---CCe-
Q 024584 172 MEHTEILKMRG--LPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTI---GSR- 244 (265)
Q Consensus 172 ~~~~~~l~v~n--Lp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l---~gr- 244 (265)
..++.+|||+| |++.+|+++|+++|++||.|.. |.+.. ++|||||+|.+.++|++||+. ||+.+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~-v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA-LLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE-EECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE-EEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35678999999 6899999999999999998863 55532 478999999999999999998 99988 345
Q ss_pred -EEEEEeC
Q 024584 245 -YVELFPS 251 (265)
Q Consensus 245 -~i~V~~~ 251 (265)
+|.|...
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555544
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=9.8e-12 Score=108.87 Aligned_cols=73 Identities=8% Similarity=0.029 Sum_probs=59.2
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHhhcCCCcee-EEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccC---Ce--e
Q 024584 55 PPSFPVVRLRG--LPFNCTDIDICKFFAGLDIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMG---RR--Y 125 (265)
Q Consensus 55 ~~~~~~vfV~n--Lp~~~te~dL~~~F~~~giv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~---~r--~ 125 (265)
..+..+|||+| |++.+||++|+++|++||.|. |.+ .. +||||||+|.+.++|++|++ +||..+. |+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 46788999999 589999999999999999554 544 32 57999999999999999999 9999872 45 4
Q ss_pred EEEeec
Q 024584 126 VEVFRC 131 (265)
Q Consensus 126 I~v~~~ 131 (265)
|.|...
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 555443
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.2e-10 Score=86.50 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=69.8
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECC-HHHHHHHHHh---CCCeeCCeE
Q 024584 171 QMEHTEILKMRGLPFS-VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVS-VEEAKRAMCK---DKMTIGSRY 245 (265)
Q Consensus 171 ~~~~~~~l~v~nLp~~-~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s-~~~A~~Al~~---~g~~l~gr~ 245 (265)
....+..|+|.||+++ +++++|+++|++||.|.. |.+..++. +|||+|.+ +++|..|+.. ++..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~-Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW-IDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE-EECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE-EEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467889999999999 999999999999997764 66665443 59999999 8999999885 478999999
Q ss_pred EEEEeCCHHHHHHH
Q 024584 246 VELFPSTPDEARRA 259 (265)
Q Consensus 246 i~V~~~~~~e~~~~ 259 (265)
+++...+.++-+..
T Consensus 88 ~~~evL~GeeE~~y 101 (121)
T 1owx_A 88 VTWEVLEGEVEKEA 101 (121)
T ss_dssp EEEEECCHHHHHHH
T ss_pred EEEEECCCHHHHHH
Confidence 99999998765543
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=6.5e-10 Score=77.68 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=59.3
Q ss_pred CccEEEEcCCCC----CCCH----HHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeE
Q 024584 174 HTEILKMRGLPF----SVKK----SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRY 245 (265)
Q Consensus 174 ~~~~l~v~nLp~----~~t~----~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~ 245 (265)
+..+|+|.-+|. +.-+ .+|.+.|.+||.+. .|+++.+. +||+|.+.++|.+||++||..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI-LIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE-EEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE-EEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 556788887762 3333 78999999999665 37777643 89999999999999999999999999
Q ss_pred EEEEeCCH
Q 024584 246 VELFPSTP 253 (265)
Q Consensus 246 i~V~~~~~ 253 (265)
|+|.+.++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999876
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=7.9e-09 Score=76.70 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=62.2
Q ss_pred CCCCCCCCeEEEcCCCCC-CCHHHHHHhhcCCCce-eEEEECCCCCceeEEEEEeCC-HHHHHHHHH-h--CCCccCCee
Q 024584 52 FPPPPSFPVVRLRGLPFN-CTDIDICKFFAGLDIV-DVLLVNKNGRFSGEAFVVFAG-PIQVEFALQ-R--DRQNMGRRY 125 (265)
Q Consensus 52 ~~~~~~~~~vfV~nLp~~-~te~dL~~~F~~~giv-~v~~~~~~g~~kG~afV~F~~-~e~A~~Al~-~--~~~~l~~r~ 125 (265)
+-.-+.++.|+|+||+++ +++++|+++|+.||.| .|.+.. |.. .|||.|.+ +++|..|+. + ++..|.+..
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 344577999999999999 9999999999999944 454432 222 59999999 789999998 6 477789988
Q ss_pred EEEeecch
Q 024584 126 VEVFRCKR 133 (265)
Q Consensus 126 I~v~~~~~ 133 (265)
+.+.....
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 88866654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.1e-09 Score=74.21 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeE
Q 024584 56 PSFPVVRLRGLP----FNCTD----IDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYV 126 (265)
Q Consensus 56 ~~~~~vfV~nLp----~~~te----~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I 126 (265)
+++.+|+|.-+| .++-. .+|.+.|++|| ++.+++.. +.+||+|.+.++|.+|++|||..++||.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~------d~~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE------DKMWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS------SSEEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec------CCEEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 567788888877 23333 67999999999 66776653 23899999999999999999999999999
Q ss_pred EEeecch
Q 024584 127 EVFRCKR 133 (265)
Q Consensus 127 ~v~~~~~ 133 (265)
+|..+++
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9977664
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=7.6e-09 Score=85.24 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=66.1
Q ss_pred ccEEEEcCCC-----CCCCHHHHHHhhhcCCceeceEEEeeCC-----CCCceeEEEEEECCHHHHHHHHHh-CCCeeCC
Q 024584 175 TEILKMRGLP-----FSVKKSEIVQFFKDYKIIEDKIHIACRP-----DGKATGEAYVEFVSVEEAKRAMCK-DKMTIGS 243 (265)
Q Consensus 175 ~~~l~v~nLp-----~~~t~~dL~~~F~~~g~~~~~v~i~~~~-----~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~g 243 (265)
...+.+.|+- ..-.+++|.+.|++||.+.. |.|+.+. +++++|++||+|.+.++|.+|++. ||..++|
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~-~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR-VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEE-EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEE-EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 3456666653 23357899999999998874 6776443 348999999999999999999997 9999999
Q ss_pred eEEEEEeCCHHHHH
Q 024584 244 RYVELFPSTPDEAR 257 (265)
Q Consensus 244 r~i~V~~~~~~e~~ 257 (265)
|.|.|.++......
T Consensus 203 r~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 203 RKVVAEVYDQERFD 216 (222)
T ss_dssp SBCEEEECCHHHHH
T ss_pred eEEEEEEcCHHHhh
Confidence 99999999877654
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.9e-09 Score=75.68 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCccEEEEcCCCCC-----CCH----HHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCC
Q 024584 173 EHTEILKMRGLPFS-----VKK----SEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGS 243 (265)
Q Consensus 173 ~~~~~l~v~nLp~~-----~t~----~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~g 243 (265)
++..+|+|.-++.+ .-+ .+|.+.|.+||.+. .|+++.+. +||+|.+.++|.+||++||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-lvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV-LVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS-EEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE-EEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 45678999988754 222 67999999999665 47888653 999999999999999999999999
Q ss_pred eEEEEEeCCH
Q 024584 244 RYVELFPSTP 253 (265)
Q Consensus 244 r~i~V~~~~~ 253 (265)
|.|+|.+-++
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999987553
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=7.7e-09 Score=72.61 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=58.0
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCee
Q 024584 56 PSFPVVRLRGLPFN-----CTD----IDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRY 125 (265)
Q Consensus 56 ~~~~~vfV~nLp~~-----~te----~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~ 125 (265)
+++.+|+|.-++.+ +-. .+|.+.|++|| ++.+++... -+||+|.+.++|.+||+||+..++||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d------~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG------QMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT------EEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC------cEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 67889999998743 222 56899999999 777766532 299999999999999999999999999
Q ss_pred EEEeec
Q 024584 126 VEVFRC 131 (265)
Q Consensus 126 I~v~~~ 131 (265)
|+|...
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999654
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=6.5e-08 Score=69.30 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=66.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcC-----CceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHH-hCCCeeCCeEE
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDY-----KIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMC-KDKMTIGSRYV 246 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~-----g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~-~~g~~l~gr~i 246 (265)
+..++|-|-|||.++++..|+.+.+++ |.... |.+..|..| |+|+|.+...|-+|.- +||..|.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K-I~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK-ILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE-EEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE-EEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 356789999999999999999999999 74442 667666555 9999999999999865 59999999999
Q ss_pred EEEeCCHHHHHHHH
Q 024584 247 ELFPSTPDEARRAE 260 (265)
Q Consensus 247 ~V~~~~~~e~~~~~ 260 (265)
++ .+..||....
T Consensus 93 r~--gTv~eL~~~~ 104 (117)
T 2l9w_A 93 RS--GTINDMKRYY 104 (117)
T ss_dssp EE--ECHHHHHHHH
T ss_pred Ee--cCHHHHHhcc
Confidence 98 5667777654
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=4.7e-08 Score=80.45 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=62.6
Q ss_pred CCeEEEcCC-----CCCCCHHHHHHhhcCCC-ceeEEEE-C-----CCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCe
Q 024584 58 FPVVRLRGL-----PFNCTDIDICKFFAGLD-IVDVLLV-N-----KNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRR 124 (265)
Q Consensus 58 ~~~vfV~nL-----p~~~te~dL~~~F~~~g-iv~v~~~-~-----~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r 124 (265)
...+.+.|+ ..+-.+++|++.|+.|| |..+.+. + .+++++|++||+|.+.++|++|++ +||..++||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 345555555 22345678999999999 5556543 2 245899999999999999999999 999999999
Q ss_pred eEEEeecchhhhH
Q 024584 125 YVEVFRCKRQDYY 137 (265)
Q Consensus 125 ~I~v~~~~~~~~~ 137 (265)
.|.+......++.
T Consensus 204 ~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 204 KVVAEVYDQERFD 216 (222)
T ss_dssp BCEEEECCHHHHH
T ss_pred EEEEEEcCHHHhh
Confidence 9999888766553
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=7.4e-07 Score=63.30 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=58.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcC----C-Ccee-EEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCCeeEEEe
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAG----L-DIVD-VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVF 129 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~----~-giv~-v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~r~I~v~ 129 (265)
.-..+|.|.|||.++.++.|.-+|+. - |.++ +.... +-|+|+|.+.+.|++.|+...+.|.+-.|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 45789999999999999999999995 2 3555 43332 57999999999999999988899999999997
Q ss_pred ecc
Q 024584 130 RCK 132 (265)
Q Consensus 130 ~~~ 132 (265)
+..
T Consensus 80 P~~ 82 (104)
T 2dhx_A 80 PAP 82 (104)
T ss_dssp ECC
T ss_pred cCC
Confidence 643
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=5.5e-06 Score=59.36 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCC-----C-ceeEEEECCCCCceeEEEEEeCCHHHHHHHH-HhCCCccCCeeEEE
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGL-----D-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFAL-QRDRQNMGRRYVEV 128 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~-----g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al-~~~~~~l~~r~I~v 128 (265)
....+|=+=|||..+++.-|+.|..++ | ++.++++..- |-|+|+|.+...|-||. +++|..|.||.|.+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 557899999999999999999999998 7 7788777533 24999999999999987 59999999999999
Q ss_pred eecc
Q 024584 129 FRCK 132 (265)
Q Consensus 129 ~~~~ 132 (265)
....
T Consensus 95 gTv~ 98 (117)
T 2l9w_A 95 GTIN 98 (117)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 5443
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.07 E-value=1.6e-05 Score=55.71 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=49.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 024584 53 PPPPSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115 (265)
Q Consensus 53 ~~~~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~ 115 (265)
+.+.....++| ++|.++...||.++|+.||-+.|..+|.+ .|||.|.+++.|..||.
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 44455677777 99999999999999999997777777755 79999999999999998
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.7e-05 Score=56.25 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=59.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhc---CC--ceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKD---YK--IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVEL 248 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~---~g--~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~gr~i~V 248 (265)
...+|.|.|||..++++.|.-+|++ -| .+. .|... + +-|+|+|.+.+.|++.|++..+.|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~-~v~~~--~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL-SWQRL--G-----CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE-EEEEE--T-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceee-EEEEc--C-----CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4578999999999999999999998 23 443 34443 2 3599999999999999999789999999999
Q ss_pred EeCCH
Q 024584 249 FPSTP 253 (265)
Q Consensus 249 ~~~~~ 253 (265)
++..+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 98654
No 386
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.97 E-value=7.5e-06 Score=60.80 Aligned_cols=86 Identities=13% Similarity=0.307 Sum_probs=62.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC---------CC-----CceeEEEEEECCHHHHHHHHHhCCCe
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP---------DG-----KATGEAYVEFVSVEEAKRAMCKDKMT 240 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~---------~g-----~~~G~afV~F~s~~~A~~Al~~~g~~ 240 (265)
..-|.|-|.|.+.++ .+.++|+.||.+.+.+...... .. ....+-.|+|+++.+|.+||.+||+.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 346888899777665 4788999999544322221100 00 12458899999999999999999999
Q ss_pred eCCeEEEEEeCCHHHHHHHHH
Q 024584 241 IGSRYVELFPSTPDEARRAES 261 (265)
Q Consensus 241 l~gr~i~V~~~~~~e~~~~~~ 261 (265)
|+|..|-|.+.++..++.-..
T Consensus 86 i~G~mIGV~Py~~~~ve~l~~ 106 (132)
T 3p3d_A 86 FNGVLLGVIPYTKDAVERLQK 106 (132)
T ss_dssp ETTEECEEEECCHHHHHHHC-
T ss_pred eCcEEEEEEECCHHHHHHHhc
Confidence 999999999999888766443
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=0.00014 Score=53.27 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=60.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeC-CeEEEEEeC
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIG-SRYVELFPS 251 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~-gr~i~V~~~ 251 (265)
.....|.|-+.|... ...|..+|++||.+.+ ... +.+ ..+-.|.|.++.+|++||.+||+.|+ +-.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~-~~~---~~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILK-HVM---SNT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEE-EEE---CSS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEE-ecc---CCC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 356789999999885 6778999999996643 222 222 34899999999999999999999998 488999986
Q ss_pred C-HHHHHHH
Q 024584 252 T-PDEARRA 259 (265)
Q Consensus 252 ~-~~e~~~~ 259 (265)
. +.-|...
T Consensus 95 ~d~~vi~~~ 103 (119)
T 1wwh_A 95 IDKNVMENS 103 (119)
T ss_dssp CCHHHHC--
T ss_pred CCHHHHHHh
Confidence 5 4444433
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00018 Score=52.68 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCccCC-eeEEEeecc
Q 024584 55 PPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGR-RYVEVFRCK 132 (265)
Q Consensus 55 ~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l~~-r~I~v~~~~ 132 (265)
....+.|-|-+.|... -..|...|+.|| |+++.. +. ...+-.|.|.++.+|++||.+|+..|++ -.|-|.++.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~--~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN--TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS--SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC--CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 4568899999999985 677888999999 777654 22 2348999999999999999999999985 567788876
Q ss_pred hhhhHH
Q 024584 133 RQDYYN 138 (265)
Q Consensus 133 ~~~~~~ 138 (265)
.+....
T Consensus 96 d~~vi~ 101 (119)
T 1wwh_A 96 DKNVME 101 (119)
T ss_dssp CHHHHC
T ss_pred CHHHHH
Confidence 555543
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.56 E-value=8.8e-05 Score=52.18 Aligned_cols=52 Identities=21% Similarity=0.428 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~ 115 (265)
...++| ++|.++...||.++|++||-+.|..+|.+ .|||.|.+++.|..||.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETT-----EEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 345666 99999999999999999997777777755 79999999999999998
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.00034 Score=49.06 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=46.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
....+++| +.|.+..-.||.++|++||-+. |..+.| + -|||.|.+++.|..||..
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~--I~WidD-T-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC--CEEEET-T-----EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE--EEEEcC-C-----eEEEEecCHHHHHHHHHh
Confidence 35567778 9999999999999999998553 777765 3 499999999999999883
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.15 E-value=0.00036 Score=49.07 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=45.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
...+++| +.|.+..-.||.++|++||-+. |..+.| + -|||.|.+++.|..||..
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv~--I~WidD-T-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEEE--EEEEET-T-----EEEEEEEEECHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCEE--EEEEcC-C-----eEEEEecCHHHHHHHHHh
Confidence 3456777 9999999999999999998543 677754 3 499999999999999884
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.09 E-value=0.00073 Score=50.11 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEE-EEC---------C-CC-----CceeEEEEEeCCHHHHHHHHHhCC
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVL-LVN---------K-NG-----RFSGEAFVVFAGPIQVEFALQRDR 118 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~-~~~---------~-~g-----~~kG~afV~F~~~e~A~~Al~~~~ 118 (265)
.....|.|-+.|.+.+. .|.+.|+.|| |++.. ..+ + .. ....+-.|+|.++.+|.+||+.||
T Consensus 5 ~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG 83 (132)
T 3p3d_A 5 NGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG 83 (132)
T ss_dssp ---CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred cCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 34667889899776655 5667899999 76621 111 0 00 123577999999999999999999
Q ss_pred CccCCeeEEEeecchhhh
Q 024584 119 QNMGRRYVEVFRCKRQDY 136 (265)
Q Consensus 119 ~~l~~r~I~v~~~~~~~~ 136 (265)
..|+|..|-|.+.++..+
T Consensus 84 ~ii~G~mIGV~Py~~~~v 101 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKDAV 101 (132)
T ss_dssp CEETTEECEEEECCHHHH
T ss_pred eEeCcEEEEEEECCHHHH
Confidence 999999888988876544
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.01 E-value=0.0038 Score=43.48 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=50.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCC--CC-CceeEEEEEECCHHHHHHHHHh-CCCeeC
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRP--DG-KATGEAYVEFVSVEEAKRAMCK-DKMTIG 242 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~--~g-~~~G~afV~F~s~~~A~~Al~~-~g~~l~ 242 (265)
.+|.|++||.+.|++++.+.++...... -...+..+ .+ ....-|+|.|.+.+++..-.+. +|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d-~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD-YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE-EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce-EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999976433 23333322 11 2346799999999999998888 998874
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.00 E-value=0.0011 Score=47.21 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=56.0
Q ss_pred CccEEEEcCCCCCC-C----HHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Q 024584 174 HTEILKMRGLPFSV-K----KSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVE 247 (265)
Q Consensus 174 ~~~~l~v~nLp~~~-t----~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~ 247 (265)
-.++|+|.||+..+ + .+.++++|..|+.... ....+. -.-..|.|.++++|.+|-.. |+..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t-F~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTT-FQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE-EEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc-eeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34689999998754 3 3678999999985432 344422 22379999999999999776 99999999999
Q ss_pred EEeCC
Q 024584 248 LFPST 252 (265)
Q Consensus 248 V~~~~ 252 (265)
|+.+.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99764
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.82 E-value=0.0057 Score=42.59 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=49.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCceeE-EEE--CC-CC-CceeEEEEEeCCHHHHHHHHH-hCCCccC
Q 024584 59 PVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLV--NK-NG-RFSGEAFVVFAGPIQVEFALQ-RDRQNMG 122 (265)
Q Consensus 59 ~~vfV~nLp~~~te~dL~~~F~~~giv~v-~~~--~~-~g-~~kG~afV~F~~~e~A~~Al~-~~~~~l~ 122 (265)
++|-||+||+++||+++.+.+..+.-.+. ..+ +. .+ ....-|||.|.+.+++..-.+ .+|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57999999999999999999998874442 222 11 12 334679999999999998888 8888753
No 396
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.0041 Score=44.18 Aligned_cols=71 Identities=7% Similarity=0.032 Sum_probs=55.7
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH-hCCCccCCeeEEEee
Q 024584 58 FPVVRLRGLPFNC-TD----IDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ-RDRQNMGRRYVEVFR 130 (265)
Q Consensus 58 ~~~vfV~nLp~~~-te----~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~-~~~~~l~~r~I~v~~ 130 (265)
.++|+|.||+.++ +. +.++++|..++ ++....... -.-..|.|.++++|.+|-. +|+..++|+.|+|.-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 4689999998866 32 46789999998 555443332 2257899999999999987 999999999999977
Q ss_pred cc
Q 024584 131 CK 132 (265)
Q Consensus 131 ~~ 132 (265)
+.
T Consensus 81 gq 82 (104)
T 1wey_A 81 AQ 82 (104)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.62 E-value=0.0082 Score=54.25 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCce-eEEEECCCCCceeEEEEEeCCHHHHHHHHHhCCCcc
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLDIV-DVLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNM 121 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~giv-~v~~~~~~g~~kG~afV~F~~~e~A~~Al~~~~~~l 121 (265)
.++|+|. .|..+++.+|.++|+++|.+ .+.+....| -||.|+|.+.++++.++.......
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 6799998 79999999999999999955 566665444 699999999999998886433333
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.54 E-value=0.018 Score=40.40 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCceeE-EEE--C-CCC-CceeEEEEEeCCHHHHHHHHH-hCCCcc
Q 024584 58 FPVVRLRGLPFNCTDIDICKFFAGLDIVDV-LLV--N-KNG-RFSGEAFVVFAGPIQVEFALQ-RDRQNM 121 (265)
Q Consensus 58 ~~~vfV~nLp~~~te~dL~~~F~~~giv~v-~~~--~-~~g-~~kG~afV~F~~~e~A~~Al~-~~~~~l 121 (265)
.-.|-||.||+.+||+++.+.++++-..+- ..+ + ..+ ..-.-|||.|.+.++...-.+ .+|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 457999999999999999888887543221 111 1 111 123569999999999998888 777765
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.43 E-value=0.016 Score=40.60 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=47.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCC------ceeEEEEEECCHHHHHHHHHh-CCCeeC
Q 024584 174 HTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGK------ATGEAYVEFVSVEEAKRAMCK-DKMTIG 242 (265)
Q Consensus 174 ~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~------~~G~afV~F~s~~~A~~Al~~-~g~~l~ 242 (265)
...+|.|+.||++.|++++.+.++++-. +....--.|+ .-.-|+|.|.+.++...-.+. +|+.+-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~----~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPA----HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSS----EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCc----cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3457999999999999999988887432 2222211221 224599999999999999888 988774
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.78 E-value=0.089 Score=48.24 Aligned_cols=54 Identities=20% Similarity=0.416 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 024584 56 PSFPVVRLRGLPFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115 (265)
Q Consensus 56 ~~~~~vfV~nLp~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~ 115 (265)
.....++|+ +|..+...+|.++|+.||-++|..++.+ .|||.|.+++.|..+|.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt-----~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSS-----EEEEECSCHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCC-----eEEEEECCHHHHHHHHH
Confidence 344577776 9999999999999999998888777765 69999999999999998
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.07 E-value=0.036 Score=50.06 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=42.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHhCCCeeCC
Q 024584 175 TEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGS 243 (265)
Q Consensus 175 ~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~~g~~l~g 243 (265)
.+.|+|. .|..+++.+|.++|+.||.+.. +.+. ...| -||.|+|.+.+++..++...+....+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~-~~~~-~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINN-HFFY-ESFG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCC-EEEE-CSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcce-EEEE-ccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 3579998 7999999999999999998874 4443 3334 59999999999999887654433333
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.44 E-value=0.89 Score=41.58 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=44.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 173 EHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 173 ~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
.....++|+ +|..+...+|.++|+.||.+. |..+.+ + .|||.|.+.+.|..++..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~--V~widd-t-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ--ISWIDD-T-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCCE--EEECSS-S-----EEEEECSCHHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCEE--EEEEcC-C-----eEEEEECCHHHHHHHHHH
Confidence 345677777 888999999999999999553 655533 2 499999999999998885
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=85.48 E-value=2.1 Score=33.05 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=39.0
Q ss_pred CccEEEEcCCCC-C--------CCHHHHHHhh--hcCCceeceEEEeeCCCCCceeEEEEEECC
Q 024584 174 HTEILKMRGLPF-S--------VKKSEIVQFF--KDYKIIEDKIHIACRPDGKATGEAYVEFVS 226 (265)
Q Consensus 174 ~~~~l~v~nLp~-~--------~t~~dL~~~F--~~~g~~~~~v~i~~~~~g~~~G~afV~F~s 226 (265)
-+.++.|.|+|. . .+..+|++.| ..|..+. |+.+..+.| ++|+|.|+|.+
T Consensus 11 WPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k--v~~l~~~~G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 11 YPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR--VRPLWNYLG-HSGTAIVEFNK 71 (172)
T ss_dssp ESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE--EEEEECSSB-EEEEEEEECCS
T ss_pred CCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce--eEecccCCC-CceeEEEEecC
Confidence 345789999997 2 2347899977 8888765 777777777 88999999996
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=73.00 E-value=19 Score=24.43 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=44.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-ceeEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 024584 54 PPPSFPVVRLRGLPFNCTDIDICKFFAGLD-IVDVLLVNKNGRFSGEAFVVFAGPIQVEFALQ 115 (265)
Q Consensus 54 ~~~~~~~vfV~nLp~~~te~dL~~~F~~~g-iv~v~~~~~~g~~kG~afV~F~~~e~A~~Al~ 115 (265)
....+|-|.|-|+|..+-..++.-....+| .--+--+| |.|.|.|.+.++...|++
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiq 64 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQ 64 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHH
Confidence 356789999999999999999887777777 33343334 689999999999999998
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=71.12 E-value=9 Score=29.49 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=39.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHhh--cCCCceeE-EEECCCCCceeEEEEEeCCHHH-HHHHHHh
Q 024584 60 VVRLRGLPF-N--------CTDIDICKFF--AGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQ-VEFALQR 116 (265)
Q Consensus 60 ~vfV~nLp~-~--------~te~dL~~~F--~~~giv~v-~~~~~~g~~kG~afV~F~~~e~-A~~Al~~ 116 (265)
.+.|-|+|. . .+..+|++.| +.|.++.+ .+.++.| +.|+|.|.|.+.-. -..|+.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSB-EEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCC-CceeEEEEecCChHHHHHHHHH
Confidence 466778776 2 3457899977 89998887 4456666 77999999998654 3445443
No 406
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=55.38 E-value=23 Score=27.44 Aligned_cols=129 Identities=8% Similarity=0.008 Sum_probs=70.4
Q ss_pred CCeEEEcCC----CCCCCHHHHHHhhcCCCceeEEEECCCCCceeEEEEEeCCH---HHHHHHHH-hCCCccCCeeEEEe
Q 024584 58 FPVVRLRGL----PFNCTDIDICKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGP---IQVEFALQ-RDRQNMGRRYVEVF 129 (265)
Q Consensus 58 ~~~vfV~nL----p~~~te~dL~~~F~~~giv~v~~~~~~g~~kG~afV~F~~~---e~A~~Al~-~~~~~l~~r~I~v~ 129 (265)
.+.+++|++ ...+.-.||++.|..+|..+|..+=.+|. |.|.+. ++....|+ .=... -|..+.|.
T Consensus 6 ~yiaLLRGINVGG~nkv~MadLr~~l~~lGf~~V~TyI~SGN------vvF~s~~~~~~l~~~ie~~l~~~-fg~~v~v~ 78 (183)
T 2hiy_A 6 RYALLVRGINVGGKNKVVMAELRQELTNLGLEKVESYINSGN------IFFTSIDSKAQLVEKLETFFAVH-YPFIQSFS 78 (183)
T ss_dssp EEEEECSSCSCC-CCCCCHHHHHHHHHHHTCEEEEEETTTTE------EEEEECSCHHHHHHHHHHHHHHH-CTTCCCCE
T ss_pred hhhhhccceecCCCCcccHHHHHHHHHHcCCccceEEEecCC------EEEecCCCHHHHHHHHHHHHHHh-cCCCCCEE
Confidence 456788888 45688999999999999888876655542 556443 33333333 11111 13334444
Q ss_pred ecchhhhHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhhcCCceeceEEEe
Q 024584 130 RCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIA 209 (265)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~dL~~~F~~~g~~~~~v~i~ 209 (265)
.-+..++....+..-- .+ . .....++|-=|+...+.++|.+.........+.+.+.
T Consensus 79 vrs~~el~~i~~~~Pf--------------~~---------~-~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~ 134 (183)
T 2hiy_A 79 LLSLEDFEAELENLPA--------------WW---------S-RDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFG 134 (183)
T ss_dssp EEEHHHHHHHHTTCCG--------------GG---------G-SCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEEC
T ss_pred EecHHHHHHHHHhCCC--------------Cc---------c-CCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEE
Confidence 4455555544433200 00 0 0234566666667778888777665543222234442
Q ss_pred eCCCCCceeEEEE-EE
Q 024584 210 CRPDGKATGEAYV-EF 224 (265)
Q Consensus 210 ~~~~g~~~G~afV-~F 224 (265)
. +.-|+ .|
T Consensus 135 ~-------~~iy~~~~ 143 (183)
T 2hiy_A 135 K-------LGIFWGKF 143 (183)
T ss_dssp S-------SEEEEEEC
T ss_pred C-------CEEEEEEe
Confidence 1 35667 66
No 407
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=53.73 E-value=39 Score=22.29 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=43.1
Q ss_pred CCHHHHHHhhhcCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCCHHHHHHHH
Q 024584 187 VKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 187 ~t~~dL~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~~~e~~~~~ 260 (265)
-|+++|+.+.+.|-.....|. ..|-..+.++-.+|-++ ....|.=|+-.| .+|.|..+-+
T Consensus 33 ktedelkkyleefrkesqnik------------vlilvsndeeldkakelaqkmeidvrtrkv--tspdeakrwi 93 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK------------VLILVSNDEELDKAKELAQKMEIDVRTRKV--TSPDEAKRWI 93 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC--SSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccCeE------------EEEEEcChHHHHHHHHHHHhhceeeeeeec--CChHHHHHHH
Confidence 489999999998864443343 34556788899999887 778888776665 6677765544
No 408
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=46.20 E-value=32 Score=24.21 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=30.2
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEe--eCC--CCCceeEEEEEECCHHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIA--CRP--DGKATGEAYVEFVSVEEAKRA 233 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~--~~~--~g~~~G~afV~F~s~~~A~~A 233 (265)
.+.+..+|++-... |+...+.|.+. ... .|+++|||.| |+|.+.|.+-
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46677778776654 55444444443 222 4678898865 7888888753
No 409
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=45.27 E-value=26 Score=24.35 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=31.6
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEee--CC--CCCceeEEEEEECCHHHHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIAC--RP--DGKATGEAYVEFVSVEEAKRAMC 235 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~--~~--~g~~~G~afV~F~s~~~A~~Al~ 235 (265)
.+.+..+|++-... |+...+.|.+.. .. .|+++|||.| |.|.+.|.+--.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 67788888877765 554444444322 22 4678888865 778877776543
No 410
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=38.52 E-value=56 Score=24.35 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEeeCC----CCCceeEEEEEECCHHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIACRP----DGKATGEAYVEFVSVEEAKRA 233 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~s~~~A~~A 233 (265)
.+.+..||++-... |+...+.|.+..-. .|+++|||.| |+|.+.|.+-
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46778888877765 56545545443222 3678888887 7788888753
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=38.46 E-value=72 Score=20.18 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCCCHHHHHHhhhcCC-ceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEeCC
Q 024584 185 FSVKKSEIVQFFKDYK-IIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFPST 252 (265)
Q Consensus 185 ~~~t~~dL~~~F~~~g-~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~~~ 252 (265)
..++..+|..++..-+ +....|--+.-.+. |.||+-... .|..+++. ++..+.|+.+.|..+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4567778888776543 33333322221122 789988654 45666676 8888999999988764
No 412
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=37.73 E-value=60 Score=22.55 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=30.4
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEee--CC--CCCceeEEEEEECCHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIAC--RP--DGKATGEAYVEFVSVEEAKR 232 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~--~~--~g~~~G~afV~F~s~~~A~~ 232 (265)
.+.+..+|++-... |+...+.|.+.. .. .|+++|||.| |.|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 67788888877765 454444344322 22 4678888865 778887765
No 413
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=35.91 E-value=58 Score=23.86 Aligned_cols=48 Identities=31% Similarity=0.438 Sum_probs=31.5
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEee--CC--CCCceeEEEEEECCHHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIAC--RP--DGKATGEAYVEFVSVEEAKRA 233 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~--~~--~g~~~G~afV~F~s~~~A~~A 233 (265)
.+.+..||++-+.. |+...+.|.+.. .. .|+++|||.| |.|.+.|.+-
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46788999988855 665444444422 22 4678888876 7788887753
No 414
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=35.15 E-value=1e+02 Score=20.73 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHHHHHHhhhc-CCce-eceEEEe-eCCCCCceeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEe
Q 024584 178 LKMRGLPFSVKKSEIVQFFKD-YKII-EDKIHIA-CRPDGKATGEAYVEFVSVEEAKRAMCK-DKMTIGSRYVELFP 250 (265)
Q Consensus 178 l~v~nLp~~~t~~dL~~~F~~-~g~~-~~~v~i~-~~~~g~~~G~afV~F~s~~~A~~Al~~-~g~~l~gr~i~V~~ 250 (265)
|.+--+|.+++-++|.+-... |.+. ...+.+. .|..| -+|++.|.++-+.||.. .-..=..=.|.|++
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~~~n~~~~l~ihvf~ 88 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLYELNKDSELLIHVFP 88 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHHHccCCCCEEEEEcc
Confidence 445556788898777755543 3322 1123333 23355 68999999999999984 11111223466665
No 415
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=34.63 E-value=29 Score=23.97 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=27.3
Q ss_pred CCCCHHHHHHhhhc-CCceeceEEEeeCC----CCCceeEEEEEECCHHHHHHH
Q 024584 185 FSVKKSEIVQFFKD-YKIIEDKIHIACRP----DGKATGEAYVEFVSVEEAKRA 233 (265)
Q Consensus 185 ~~~t~~dL~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~s~~~A~~A 233 (265)
.+.+..+|++-... |+...+.|.+..-. .|+++|||.| |.|.+.|.+-
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777766654 44444434443222 3567888865 5666666553
No 416
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.50 E-value=78 Score=29.61 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=39.7
Q ss_pred cCCCCCCCHHHHHHhhh----cCCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHHHh
Q 024584 181 RGLPFSVKKSEIVQFFK----DYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCK 236 (265)
Q Consensus 181 ~nLp~~~t~~dL~~~F~----~~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al~~ 236 (265)
...+.+.+--||..+|- .+|++.. +.+...+.-..+.++++.|.+.++|..|+..
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITe-atLrL~P~P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITE-ATIKIRPTPEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEE-EEEECEECCSEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceee-eeeeeccCCccccccccccCCchhhhhhHHH
Confidence 34556666668888884 3677664 6665555556677899999999999988763
No 417
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.05 E-value=1.9e+02 Score=19.21 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=29.9
Q ss_pred ceeEEEEEECCHHHHHHHHHh-CCC--eeCCeEEEEEeCCHHHHHHHH
Q 024584 216 ATGEAYVEFVSVEEAKRAMCK-DKM--TIGSRYVELFPSTPDEARRAE 260 (265)
Q Consensus 216 ~~G~afV~F~s~~~A~~Al~~-~g~--~l~gr~i~V~~~~~~e~~~~~ 260 (265)
-.||-||++...++...++.. .+. .+++ +.+.+|+....
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~------pl~~~Ev~~il 90 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVRGIVPG------TIAIEEIEPLL 90 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEEEECSS------CCCHHHHHHHH
T ss_pred cCCEEEEEEecchhHHHHHHCCCCceEeCCC------CCCHHHHHHHh
Confidence 678999999999999999886 442 3454 77888877654
No 418
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.55 E-value=74 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhhc
Q 024584 176 EILKMRGLPFSVKKSEIVQFFKD 198 (265)
Q Consensus 176 ~~l~v~nLp~~~t~~dL~~~F~~ 198 (265)
..+.|.||||.++..-|.+++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH
T ss_pred ccEEEecCcccccHHHHHHHhcC
Confidence 46789999999999999999876
No 419
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.34 E-value=2e+02 Score=19.14 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHhhhc-CCceeceEEEeeCCCCCceeEEEEEECCHHHHHHHH
Q 024584 182 GLPFSVKKSEIVQFFKD-YKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAM 234 (265)
Q Consensus 182 nLp~~~t~~dL~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~s~~~A~~Al 234 (265)
-+...+++.+|++.++. |+.....|..+..+.|. =-|+|++....+|....
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHH
Confidence 34568999999999987 77555456666554432 24999998777666543
Done!