BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024586
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/269 (69%), Positives = 221/269 (82%), Gaps = 5/269 (1%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
MGKGGVGKSSTVNS+IGEKA VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN
Sbjct: 44 MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+ AITD FG++IWK++ +VLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L+Y F SKRS ALLK + +KK+D+QG +PV+LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
+LP GT+WIPNL ITE+ NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY ++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283
Query: 241 PLIRAIKSDAAKEAKPVW-----ARASRR 264
PL+RAIKSD ++E+KP W ASRR
Sbjct: 284 PLVRAIKSDVSRESKPAWELRDSGLASRR 312
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/258 (68%), Positives = 211/258 (81%), Gaps = 1/258 (0%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L Y+ F SKRSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
VLPNG AWIP+LV+TITEV LN S+++ VDK L++GPNPN++GK+ IP IFA QY F+ K
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAK 283
Query: 241 PLIRAIKSDAAKEAKPVW 258
P+ I+ D A E KP W
Sbjct: 284 PIEALIRRDIATETKPAW 301
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 325 bits (832), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 157/257 (61%), Positives = 197/257 (76%), Gaps = 1/257 (0%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
+ A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L YE F SKRS++LLK + + M+K++ + S + VV ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
LPNG AWIPNLVK IT+V N KA+ VDKK+V+G ++KGK LIP I QY I+K
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQY-LIVK 280
Query: 241 PLIRAIKSDAAKEAKPV 257
+ AI++D KP+
Sbjct: 281 MIQGAIRNDIKTSGKPL 297
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI---EGG 57
+GK GVGKS+T+NSI E ++ FQ + + G + ++DTPGL+
Sbjct: 462 LGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQ 521
Query: 58 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
+ N ++ ++ F+ D++LY+DRLD+ D+ D + R ITD FG IW A++ L
Sbjct: 522 HKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGL 581
Query: 118 THAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
THA + PD + Y++F ++RS + + + + + PV LVEN C
Sbjct: 582 THAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLVENHSAC 636
Query: 173 AKNENDEKVLPNGTAWIPNLV 193
N ++VLPNG W P+L+
Sbjct: 637 RTNRAGQRVLPNGQVWKPHLL 657
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI---EGG 57
+GK GVGKS+T+NSI E FQ R V G + ++DTPGL+
Sbjct: 580 LGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQ 639
Query: 58 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
N + +K F+ D++LY+DRLD+ D+ D + R I+D FG IW A++ L
Sbjct: 640 AKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGL 699
Query: 118 THAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
THA PD + Y++F ++RS + + + + + PV LVEN C
Sbjct: 700 THAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLVENHSAC 754
Query: 173 AKNENDEKVLPNGTAWIPNLV 193
N ++VLPNG W P+L+
Sbjct: 755 RTNRAGQRVLPNGQVWKPHLL 775
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI--EGGY 58
+G+ GVGKSST+N++ G + V + +S P SR GF LNI+DTPG + +G
Sbjct: 157 LGRTGVGKSSTLNTVFG-IDIPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGEL 215
Query: 59 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118
V+ + + I+R+L KTI +L+V++ R D + + T+ G Q+W+ A +VLT
Sbjct: 216 VDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLT 275
Query: 119 HAQLSLPDRLDYEVFCSK------------RSEALLKFVSP-STWMKKKDIQGSFVPVVL 165
+A LPD Y+ F + R+ KF + + + D +PV
Sbjct: 276 YANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYA 334
Query: 166 VENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 200
+ENS RC +NE ++VL +GT + L+ + ++V
Sbjct: 335 MENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMV 369
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 99/201 (49%), Gaps = 8/201 (3%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-- 58
+GK GVGKS+T+NSI+G + ++ F +S + G + +DTPGL
Sbjct: 861 LGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQ 920
Query: 59 -VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
N + +K+ + D++LYVDRLD D + + R IT + G IWK A++ L
Sbjct: 921 STNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTL 980
Query: 118 THAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
THA + PD L Y+VF ++ S + + + + + PV LVEN C
Sbjct: 981 THAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLC 1040
Query: 173 AKNENDEKVLPNGTAWIPNLV 193
KN KVLPNG W L+
Sbjct: 1041 RKNREGVKVLPNGQTWRSQLL 1061
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL----IEG 56
+GK GVGKS+T+NSI G+ F+ R V + +G + +DTPG
Sbjct: 172 LGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSS 231
Query: 57 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
N + IKR++ + DV+LY+DRLD+ + D + + IT+ FG IW ++V
Sbjct: 232 TRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILV 291
Query: 117 LTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
+TH+ + R ++YE + +R + + ++ + K + PV+LVEN C
Sbjct: 292 MTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLVENHPSC 346
Query: 173 AKNENDEKVLPNGTAWIPNLV 193
KN E VLPNG W P +
Sbjct: 347 KKNLAGEYVLPNGVVWKPQFM 367
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----MVSRSRAGFTLNIVDTPGLI- 54
+G+ G GKS+T NSI+G+K G PV + SR AG+ + +VDTP +
Sbjct: 9 VGRTGTGKSATGNSILGQKCF----LSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIFS 64
Query: 55 -EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 112
E + ++ + F+L+ LL V +L + + D Q A+ FG+Q+ R
Sbjct: 65 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGKQVMAR 122
Query: 113 ALIVLTHAQLSLPDRLDYEVFCS 135
++V T + D L V C+
Sbjct: 123 TVVVFTRQEDLAGDSLQDYVHCT 145
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGY 58
+GK G GKSST NSI+GEK V S ++ V R G L +VDTPG+ +
Sbjct: 36 LGKTGAGKSSTGNSILGEK-VFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGIFDTEV 94
Query: 59 VNYHAIQLIKRF--LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
+ + I R+ L + LL V L Y V+ + + T+ I D FG+Q + +++
Sbjct: 95 PDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDMFGKQARRFMILL 152
Query: 117 LT 118
LT
Sbjct: 153 LT 154
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVS-----RSRAGFTLNIVDTPGLI 54
+GK G GKS+T NSI+G + F+S+ RPV + R+ G L ++DTP ++
Sbjct: 99 VGKSGSGKSATGNSILGRR-----VFESKLSARPVTQAFQQGCRAWEGRELQVIDTPDIL 153
Query: 55 E---GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK 111
G+ + L K VLL + R D+Q+ + + FG+ I
Sbjct: 154 SPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLEEVFGKGILA 210
Query: 112 RALIVLT 118
R ++V T
Sbjct: 211 RTILVFT 217
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV-----SRSRAGFTLNIVDTPGLI 54
+GK G GKS+T NSI+G +A F+S+ RPV +R G L ++DTP +
Sbjct: 109 VGKTGSGKSATGNSILGRQA-----FESKISARPVTTTFQKGTREFEGKELEVIDTPDIF 163
Query: 55 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114
+ I L + +L V ++ Y + D+ + R + + FG I +
Sbjct: 164 SPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAE--DQAVARCLQEIFGNTILAYTI 221
Query: 115 IVLTHAQ 121
+V T +
Sbjct: 222 LVFTRKE 228
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV-----SRSRAGFTLNIVDTPGLI 54
+GK G GKS+T NSI+G + F+S+ RPV + SR G L ++DTP ++
Sbjct: 108 VGKTGSGKSATGNSILGRQ-----VFESKISARPVTMAFQKGSRELEGKELEVIDTPDIL 162
Query: 55 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114
+ I L + +L V + V R D++ R + + FG I +
Sbjct: 163 SPQNQPEATAKKICDILASPGPHAVLLV--IQVGRYTTEDQEAARCLQEIFGNGILAYTI 220
Query: 115 IVLTHAQ 121
+V T +
Sbjct: 221 LVFTRKE 227
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 15/131 (11%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLN-----IVDTPGLI 54
+G+ GVGKS+T N+I+G A VS +++ PV SRS++G TL+ +VDTP L
Sbjct: 480 LGRSGVGKSATGNTILGRPAF-VSQLRAQ---PV-TSRSQSGRRTLDWQDIVVVDTPSLN 534
Query: 55 EGGYVNYHAIQL---IKRFLLNKTIDVL-LYVDRLDVYRVDNLDKQITRAITDNFGEQIW 110
+ + QL IK+ LL + + ++V + R D+ + + +F E I
Sbjct: 535 QMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASFEENIM 594
Query: 111 KRALIVLTHAQ 121
K +++ T +
Sbjct: 595 KYMIVLFTRKE 605
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE--GPRPVMVSRSRAGFTLNIVDTPGLIEG-G 57
+GK G GKS+T N+I+G KAV S F R S S G + ++DTP L G
Sbjct: 54 LGKQGAGKSATGNTILG-KAVFESRFSHHMVTKRCQSESVSVRGKQVIVIDTPDLFSSLG 112
Query: 58 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
L + L VLL V + DK+ I FG Q ++ ++V
Sbjct: 113 CPEVQQQNLRQCLDLLADPYVLLLV--TPIGHSTEEDKKTIEGIQGVFGPQAYRHMIVVF 170
Query: 118 T 118
T
Sbjct: 171 T 171
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMV-----SRSRAGFTLNIVDTPGLI 54
MGK G GKS+T NSI+G F+S+ RPV SR AG L ++DTP ++
Sbjct: 46 MGKTGSGKSATGNSILGR-----DVFESKLSTRPVTKTSQRRSREWAGKELEVIDTPNIL 100
Query: 55 EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA 113
A + + +L+ +L V +L R + D+Q+ R + + FG +
Sbjct: 101 SPQVSPEVADAICQAIVLSAPGPHAVLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHT 158
Query: 114 LIVLTHAQ 121
++V T +
Sbjct: 159 ILVFTRKE 166
>sp|A5N6N6|ERA_CLOK5 GTPase Era OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 /
NCIMB 10680) GN=era PE=3 SV=1
Length = 293
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53
+G+ VGKS+ +NSI+GEK VS + +R F L VDTPG+
Sbjct: 10 IGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|B9E055|ERA_CLOK1 GTPase Era OS=Clostridium kluyveri (strain NBRC 12016) GN=era
PE=3 SV=1
Length = 293
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53
+G+ VGKS+ +NSI+GEK VS + +R F L VDTPG+
Sbjct: 10 IGRPNVGKSTLLNSIMGEKLSIVSCKPQTTRNSIQTILTRDDFQLIFVDTPGI 62
>sp|B8CWY9|DER_HALOH GTPase Der OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=der PE=3 SV=1
Length = 438
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+GK VGKSS VN I+G++ V VS + + G N++DT GL + V
Sbjct: 183 IGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGLRKKSRVK 242
Query: 61 -----YHAIQLIKRFLLNKTIDVLLYVDRLD 86
Y A++ IK ++++ V++ +D L+
Sbjct: 243 EATEYYSALRTIK--AIDRSDGVIMMIDALE 271
>sp|C7LZP1|ERA_ACIFD GTPase Era OS=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM
15462 / NBRC 103882 / ICP) GN=era PE=3 SV=1
Length = 287
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53
+G+ VGKSS VN++ GE+A VS + R V V L +VDTPG+
Sbjct: 18 IGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGI 70
>sp|Q7NS92|DER_CHRVO GTPase Der OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=der PE=3 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ VN+I+GE+ V + + R G T I+DT G+ VN
Sbjct: 180 IGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSIYIDFEREGHTYTIIDTAGVRRRAKVN 239
Query: 61 YHAIQLIKRFLLNKTIDVL 79
+++++F + KT+ +
Sbjct: 240 ----EMLEKFSVIKTMKAI 254
>sp|B7IH25|ERA_THEAB GTPase Era OS=Thermosipho africanus (strain TCF52B) GN=era PE=3
SV=1
Length = 299
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE-----G 56
GK VGKSS VN+I+G+K + VS + V + F + VDTPG+ + G
Sbjct: 10 GKPNVGKSSIVNAIVGKKILIVSDKPQTTRNRINVIHTTDDFQIIFVDTPGIHKPLYRLG 69
Query: 57 GYVNYHAIQLIK-------------------RFLLN-------KTIDVLLYVDRLDVYRV 90
Y+ A+ +K RF+ + KTI V+ +D +D +V
Sbjct: 70 EYMVKAAVSALKGVDLILTVVDAKEGVGKPERFVFDYVNQSKTKTIGVINKIDLVDAKKV 129
Query: 91 DNLDKQITRAITDNFG 106
+ + +I ++ + G
Sbjct: 130 EQIYNEIKNSLENCVG 145
>sp|Q74JL6|DER_LACJO GTPase Der OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=der PE=3 SV=1
Length = 435
Score = 37.7 bits (86), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
+G+ VGKSS VN+I+GE+ V VS + + + + G IVDT G+ G V
Sbjct: 180 IGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDGQKYTIVDTAGIRRRGKV 238
>sp|A4IQA2|DER_GEOTN GTPase Der OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=der PE=3 SV=1
Length = 436
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
+G+ VGKSS VN+I+GE+ V VS V S R G I+DT G+ + G +
Sbjct: 181 IGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTSFVREGQKYVIIDTAGMRKRGKI 239
>sp|Q119L7|DER_TRIEI GTPase Der OS=Trichodesmium erythraeum (strain IMS101) GN=der PE=3
SV=1
Length = 453
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKSS +NS IGEK VS + R G T ++DT G+ + V
Sbjct: 182 VGRPNVGKSSLLNSFIGEKRAIVSPISGTTRDAIDTVVERNGKTYRLIDTAGIRKKKNVE 241
Query: 61 YHA--IQLIKRFLLNKTIDVLLYV-DRLD 86
Y A + + F + +V+++V D LD
Sbjct: 242 YGAEFFGINRAFKAIRRAEVVMFVIDALD 270
>sp|Q30TK8|DER_SULDN GTPase Der OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=der PE=3 SV=1
Length = 494
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKSS +N+++GE+ VS+ P+ S L VDT GL G
Sbjct: 240 IGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQLTFVDTAGLRRRG--- 296
Query: 61 YHAIQLIKRFLLNKTIDVL 79
I I++F L +T ++L
Sbjct: 297 --KIVGIEKFALMRTKEML 313
>sp|Q5KXT0|DER_GEOKA GTPase Der OS=Geobacillus kaustophilus (strain HTA426) GN=der PE=3
SV=1
Length = 436
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
+G+ VGKSS VN+I+GE+ V VS V S R G I+DT G+ + G +
Sbjct: 181 IGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTSFVREGQEYVIIDTAGMRKRGKI 239
>sp|A0M5P1|DER_GRAFK GTPase Der OS=Gramella forsetii (strain KT0803) GN=der PE=3 SV=1
Length = 434
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53
+G+ GKSS +N++IGE V+ + +R GF N+VDT G+
Sbjct: 180 VGRPNAGKSSFINALIGEDRYIVTDIAGTTRDSIDTRYNRFGFEFNLVDTAGI 232
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIE--- 55
+GK G GKS+ NSI+G +A F + +S SR+ ++I+D P +
Sbjct: 253 VGKRGAGKSAAGNSILGRQAFQTG-FSEQSVTQSFLSESRSWRKKKVSIIDAPDISSLKN 311
Query: 56 -GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114
V H FLL V L Y + D+ + I +NFGE+ ++ +
Sbjct: 312 IDSEVRKHICTGPHAFLL---------VTPLGFYTKN--DEAVLSTIQNNFGEKFFEYMI 360
Query: 115 IVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 145
I+LT + L D+ D + F ++AL +
Sbjct: 361 ILLTRKE-DLGDQ-DLDTFLRNSNKALYGLI 389
>sp|Q1GXL7|MNME_METFK tRNA modification GTPase MnmE OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=mnmE PE=3 SV=1
Length = 446
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE-GGYV 59
+G+ VGKSS +N + GE+ V+ + S G TL+I DT GL E V
Sbjct: 221 VGQPNVGKSSLMNQLAGEEVAIVTPIAGTTRDTIKNSIQINGITLHITDTAGLRETNDEV 280
Query: 60 NYHAIQLIKRFLLNKTIDVLL 80
H I R L N + +LL
Sbjct: 281 EQHGIARTWRALENAGVALLL 301
>sp|Q7VDI8|DER_PROMA GTPase Der OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=der PE=3 SV=1
Length = 456
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKSS +N+I GEK VS + + S R G ++DT G+ VN
Sbjct: 183 VGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDTIDTSIVREGKLWKLIDTAGIRRRKSVN 242
Query: 61 Y 61
Y
Sbjct: 243 Y 243
>sp|B2GC35|DER_LACF3 GTPase Der OS=Lactobacillus fermentum (strain NBRC 3956 / LMG
18251) GN=der PE=3 SV=1
Length = 437
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGLIEGG-- 57
+G+ VGKSS VN+I+GE V VS + ++ G +VDT G+ + G
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSDMAGTTRDAINTQFTAKDGREFTMVDTAGIKKKGKL 239
Query: 58 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIV 116
Y N L++ DV+L V L+ + LDK I + + RA+I+
Sbjct: 240 YENTERYALMRSMRAIDDSDVVLVV--LNAEEGIRELDKHIA-----GYAHEAG-RAVII 291
Query: 117 LTHAQLSLPDR 127
+ + ++PDR
Sbjct: 292 VVNKWDTIPDR 302
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 55
+GK G GKS+T N+I+GE+ Q+ SR G L +VDTPGL +
Sbjct: 14 VGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGLFD 69
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 27/146 (18%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLN-----IVDTPGLIE 55
+G+ G GKS+T N+I+G A F +PV S TL+ +VDTP I+
Sbjct: 481 LGRSGAGKSATGNTILGRSAF----FSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFIQ 536
Query: 56 GGYVN----------YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNF 105
+H + L + + ++V L + R D+ + + +F
Sbjct: 537 TPGTEKDPSRLKEEIHHCLSLCEEGM-------KIFVLVLQLGRFTQEDEVVVEQLEASF 589
Query: 106 GEQIWKRALIVLTHAQ-LSLPDRLDY 130
E I K +++ T + L D DY
Sbjct: 590 EENIMKYMIVLFTRKEDLGDGDLHDY 615
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE--GPRPVMVSRSRAGFTLNIVDTPGLIEGGY 58
+GK G GKS+T N+I+G KAV S F R S S G + ++DTP L
Sbjct: 54 LGKQGAGKSATGNTILG-KAVFESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLFSSLS 112
Query: 59 VNYHAIQLIKRF--LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
+ Q +K+ LL VLL V + Y + D++ I G + ++ ++V
Sbjct: 113 CSEVRQQNLKQCLELLADDHCVLLLVTPIGHYTEE--DRETIEGIWGKIGPKAYRHMIVV 170
Query: 117 LT 118
T
Sbjct: 171 FT 172
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGL----I 54
MGK GVGKS+ NSI+G++ + + S SR G + I+D+P + +
Sbjct: 290 MGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEISSWKL 349
Query: 55 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114
+ V H FLL + L D DV+ + I FGE+ K +
Sbjct: 350 DESAVKNHTFPGPHAFLLVTPLGSSLKSDD-DVFSI----------IKRIFGEKFTKFTI 398
Query: 115 IVLTHAQ 121
++ T +
Sbjct: 399 VLFTRKE 405
>sp|A7H4F3|ERA_CAMJD GTPase Era OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=era PE=3 SV=1
Length = 291
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57
+G+ GKS+ +NS++ EK VS Q+ R + + +DTPGL E G
Sbjct: 9 IGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKAIVIHEKNQIIFIDTPGLHESG 65
>sp|A6LEP5|DER_PARD8 GTPase Der OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=der PE=3 SV=1
Length = 437
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ GKSS +N+ IGE V+ + ++ G +VDT G+ + G VN
Sbjct: 181 IGRPNAGKSSLINAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKKGKVN 240
Query: 61 ----YHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALI 115
Y+++ R + N + VL+ LD R +++ D I + N K+ L+
Sbjct: 241 EDLEYYSVIRSIRTIENSDVCVLM----LDATRGIESQDMNIFSLVQKN------KKGLV 290
Query: 116 VLTH 119
V +
Sbjct: 291 VCVN 294
>sp|A6LL68|ERA_THEM4 GTPase Era OS=Thermosipho melanesiensis (strain BI429 / DSM
12029) GN=era PE=3 SV=1
Length = 299
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53
GK VGKSS VN+I+G K + VS + V + F + VDTPG+
Sbjct: 10 GKPNVGKSSLVNAIVGRKVLIVSDKPQTTRNRINVIHTTNDFQVIFVDTPGI 61
>sp|C5D3F4|DER_GEOSW GTPase Der OS=Geobacillus sp. (strain WCH70) GN=der PE=3 SV=1
Length = 436
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
+G+ VGKSS VN+I+GE+ V VS V + R G I+DT G+ + G +
Sbjct: 181 IGRPNVGKSSLVNAILGEERVIVSDIAGTTRDAVDTTFVREGQEYVIIDTAGMRKRGKI 239
>sp|B1X0B0|DER_CYAA5 GTPase Der OS=Cyanothece sp. (strain ATCC 51142) GN=der PE=3 SV=1
Length = 452
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKSS +N+ +GE+ VS + R T ++DT G+ VN
Sbjct: 182 IGRPNVGKSSLLNAFLGEQRAIVSPISGTTRDAIDTVVERGDNTYRLIDTAGIRRKKNVN 241
Query: 61 YHA--IQLIKRFLLNKTID-VLLYVDRLD 86
Y A + + F + D VLL +D +D
Sbjct: 242 YGAEFFSINRAFKAIRRADVVLLVIDAID 270
>sp|B0TFW3|DER_HELMI GTPase Der OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=der PE=3 SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKSS VN+I+G++ V VS + + R G ++DT G+ G +
Sbjct: 183 IGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILIDTAGMRRKGRIE 242
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDV 87
+ ++R+ + ++ L +DR DV
Sbjct: 243 ----EAVERYSVMRS---LRAIDRSDV 262
>sp|Q039G4|DER_LACC3 GTPase Der OS=Lactobacillus casei (strain ATCC 334) GN=der PE=3
SV=1
Length = 435
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--Y 58
+G+ VGKSS VN+I+GE V VS + + T ++DT G+ + G Y
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKRGKVY 239
Query: 59 VNYHAIQLIKRFLLNKTIDVLLYV 82
N +++ DV+L+V
Sbjct: 240 ENTEKYAVMRALRAIDRSDVVLFV 263
>sp|B3WE80|DER_LACCB GTPase Der OS=Lactobacillus casei (strain BL23) GN=der PE=3 SV=1
Length = 435
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--Y 58
+G+ VGKSS VN+I+GE V VS + + T ++DT G+ + G Y
Sbjct: 180 IGRPNVGKSSLVNAILGENRVIVSPIEGTTRDAIDTKFEAVDETFTMIDTAGIRKRGKVY 239
Query: 59 VNYHAIQLIKRFLLNKTIDVLLYV 82
N +++ DV+L+V
Sbjct: 240 ENTEKYAVMRALRAIDRSDVVLFV 263
>sp|Q7MT48|DER_PORGI GTPase Der OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
GN=der PE=3 SV=1
Length = 437
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ GKSS +N+ IGE V+ + ++ G +VDT G+ + G VN
Sbjct: 182 VGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKRGKVN 241
Query: 61 ----YHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDN 104
Y+++ R + N + VL+ LD R V++ D I + I N
Sbjct: 242 EDLEYYSVIRSIRAIENSDVCVLM----LDATRGVESQDLNIFQIIQRN 286
>sp|Q8A135|DER_BACTN GTPase Der OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM
2079 / NCTC 10582 / E50 / VPI-5482) GN=der PE=3 SV=1
Length = 437
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ GKSS VN+ IGE V+ + ++ GF +VDT G+ + VN
Sbjct: 181 VGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIRKKNKVN 240
Query: 61 ----YHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDN 104
Y+++ R + N + +L+ LD R V++ D I I N
Sbjct: 241 EDLEYYSVVRSIRSIENADVCILM----LDATRGVESQDLNILSLIQKN 285
>sp|Q8EUV6|MNME_MYCPE tRNA modification GTPase MnmE OS=Mycoplasma penetrans (strain HF-2)
GN=mnmE PE=3 SV=1
Length = 444
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 56
+GK VGKSS +NS+I + VS + V S + G LN +DT G+ E
Sbjct: 221 VGKPNVGKSSLLNSLIKKNKAIVSDIKGTTRDLVTESINLEGLLLNFIDTAGIRES 276
>sp|B3H0R7|DER_ACTP7 GTPase Der OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=der PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ N I+GE+ V V + + R G I+DT G+ + G VN
Sbjct: 223 VGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVN 282
Query: 61 YHAIQLIKRFLLNKTIDVL 79
+++F + KT+ +
Sbjct: 283 L----AVEKFSVIKTLQAI 297
>sp|A3MZC1|DER_ACTP2 GTPase Der OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=der PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ N I+GE+ V V + + R G I+DT G+ + G VN
Sbjct: 223 VGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVN 282
Query: 61 YHAIQLIKRFLLNKTIDVL 79
+++F + KT+ +
Sbjct: 283 L----AVEKFSVIKTLQAI 297
>sp|B0BTQ8|DER_ACTPJ GTPase Der OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=der PE=3 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ N I+GE+ V V + + R G I+DT G+ + G VN
Sbjct: 223 VGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVN 282
Query: 61 YHAIQLIKRFLLNKTIDVL 79
+++F + KT+ +
Sbjct: 283 L----AVEKFSVIKTLQAI 297
>sp|Q1LLJ5|DER_RALME GTPase Der OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=der PE=3 SV=1
Length = 447
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ VN++IGE+ V + V R G ++DT GL + G V
Sbjct: 186 VGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRKRGKV- 244
Query: 61 YHAIQLIKRFLLNKTI 76
+ I++F + KT+
Sbjct: 245 ---FEAIEKFSVVKTL 257
>sp|O87407|DER_NEIG1 GTPase Der OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
GN=der PE=3 SV=1
Length = 485
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ VN+I+GEK V + + R G I+DT G+ G V+
Sbjct: 181 IGRPNVGKSTLVNAILGEKRVIAFDMAGTTRDSIHIDFEREGKPFTIIDTAGVRRRGKVD 240
>sp|Q46ZI7|DER_CUPPJ GTPase Der OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=der PE=3 SV=1
Length = 447
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+G+ VGKS+ VN++IGE+ V + V R G ++DT GL G V
Sbjct: 186 VGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRRRGKV- 244
Query: 61 YHAIQLIKRFLLNKTI 76
+ I++F + KT+
Sbjct: 245 ---FEAIEKFSVVKTL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,998,080
Number of Sequences: 539616
Number of extensions: 4145737
Number of successful extensions: 13252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 12776
Number of HSP's gapped (non-prelim): 782
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)