Query 024586
Match_columns 265
No_of_seqs 290 out of 2362
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00991 3a0901s02IAP34 GTP-b 100.0 1.5E-62 3.3E-67 428.9 24.1 264 1-264 44-307 (313)
2 TIGR00993 3a0901s04IAP86 chlor 100.0 7.1E-46 1.5E-50 346.6 21.1 245 1-245 124-377 (763)
3 cd01853 Toc34_like Toc34-like 100.0 1.4E-37 3E-42 268.0 17.6 208 1-209 37-248 (249)
4 PF04548 AIG1: AIG1 family; I 100.0 5E-30 1.1E-34 216.7 13.6 176 1-180 6-200 (212)
5 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 1.1E-26 2.3E-31 194.0 17.1 145 1-149 6-153 (196)
6 COG3596 Predicted GTPase [Gene 99.8 1.7E-20 3.6E-25 159.7 11.8 182 1-210 45-231 (296)
7 PF05049 IIGP: Interferon-indu 99.8 4.6E-23 9.9E-28 185.1 -5.5 229 1-262 41-284 (376)
8 COG1159 Era GTPase [General fu 99.8 6.6E-18 1.4E-22 145.6 15.1 118 1-126 12-130 (298)
9 PF02421 FeoB_N: Ferrous iron 99.8 2.1E-18 4.4E-23 138.1 10.5 118 1-128 6-123 (156)
10 PF01926 MMR_HSR1: 50S ribosom 99.8 1.7E-17 3.7E-22 126.7 12.5 111 1-119 5-116 (116)
11 cd04104 p47_IIGP_like p47 (47- 99.7 2.7E-17 5.8E-22 137.4 12.6 175 1-209 7-192 (197)
12 COG1160 Predicted GTPases [Gen 99.7 2.4E-17 5.2E-22 149.5 11.8 115 1-123 9-125 (444)
13 TIGR00436 era GTP-binding prot 99.7 5.8E-16 1.3E-20 135.5 15.2 114 1-123 6-120 (270)
14 cd01894 EngA1 EngA1 subfamily. 99.7 4.4E-16 9.5E-21 123.8 12.3 115 1-123 3-118 (157)
15 COG1160 Predicted GTPases [Gen 99.7 1.2E-16 2.7E-21 144.8 9.5 126 1-133 184-312 (444)
16 PRK00089 era GTPase Era; Revie 99.7 2.8E-15 6E-20 132.6 16.3 115 1-123 11-126 (292)
17 COG0486 ThdF Predicted GTPase 99.7 5E-16 1.1E-20 141.3 11.5 116 1-125 223-339 (454)
18 PRK15494 era GTPase Era; Provi 99.6 7.5E-15 1.6E-19 132.4 17.2 115 1-123 58-173 (339)
19 cd01879 FeoB Ferrous iron tran 99.6 4.8E-15 1E-19 118.2 14.1 114 1-124 2-115 (158)
20 PRK03003 GTP-binding protein D 99.6 7.4E-15 1.6E-19 138.1 17.5 117 1-123 217-335 (472)
21 cd01850 CDC_Septin CDC/Septin. 99.6 5.6E-15 1.2E-19 129.6 15.3 116 1-123 10-156 (276)
22 cd01898 Obg Obg subfamily. Th 99.6 4.2E-15 9.1E-20 120.2 12.1 117 1-124 6-128 (170)
23 cd01881 Obg_like The Obg-like 99.6 2.2E-15 4.8E-20 122.3 10.1 116 1-123 2-133 (176)
24 PRK12298 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.2E-19 131.7 16.7 116 1-123 165-288 (390)
25 PRK12299 obgE GTPase CgtA; Rev 99.6 1.5E-14 3.2E-19 130.0 15.7 116 1-123 164-284 (335)
26 TIGR03594 GTPase_EngA ribosome 99.6 1.7E-14 3.8E-19 134.0 16.7 117 1-123 178-296 (429)
27 cd01897 NOG NOG1 is a nucleola 99.6 1.1E-14 2.4E-19 117.6 13.3 117 1-123 6-126 (168)
28 TIGR03598 GTPase_YsxC ribosome 99.6 1.3E-14 2.9E-19 119.0 14.0 114 1-123 24-142 (179)
29 cd01895 EngA2 EngA2 subfamily. 99.6 1.7E-14 3.6E-19 116.2 14.1 118 1-124 8-127 (174)
30 TIGR03594 GTPase_EngA ribosome 99.6 1E-14 2.2E-19 135.5 13.9 116 1-124 5-121 (429)
31 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2.6E-14 5.6E-19 113.4 14.1 114 1-124 7-121 (157)
32 COG0218 Predicted GTPase [Gene 99.6 1E-14 2.2E-19 119.7 12.0 114 1-124 30-149 (200)
33 cd04163 Era Era subfamily. Er 99.6 2E-14 4.4E-19 114.6 13.0 115 1-123 9-124 (168)
34 PRK00093 GTP-binding protein D 99.6 2.9E-14 6.3E-19 132.8 15.3 117 1-123 179-297 (435)
35 TIGR02729 Obg_CgtA Obg family 99.6 4.4E-14 9.5E-19 126.8 15.3 116 1-123 163-286 (329)
36 COG1084 Predicted GTPase [Gene 99.6 1.8E-14 4E-19 125.6 12.3 112 2-123 175-293 (346)
37 PRK09518 bifunctional cytidyla 99.6 5.5E-14 1.2E-18 138.2 16.7 117 1-123 456-574 (712)
38 PRK00093 GTP-binding protein D 99.6 4.4E-14 9.5E-19 131.6 14.3 114 1-123 7-122 (435)
39 TIGR03156 GTP_HflX GTP-binding 99.6 4.2E-14 9.1E-19 128.0 13.5 118 1-123 195-314 (351)
40 cd00880 Era_like Era (E. coli 99.6 8.6E-14 1.9E-18 109.6 13.7 116 1-124 2-118 (163)
41 PRK03003 GTP-binding protein D 99.6 5.6E-14 1.2E-18 132.1 13.7 115 1-123 44-159 (472)
42 TIGR00450 mnmE_trmE_thdF tRNA 99.5 5.5E-14 1.2E-18 130.7 12.6 114 1-123 209-323 (442)
43 cd01878 HflX HflX subfamily. 99.5 1.3E-13 2.8E-18 115.3 13.1 118 1-123 47-166 (204)
44 PRK12297 obgE GTPase CgtA; Rev 99.5 9.3E-14 2E-18 128.1 13.2 115 1-122 164-286 (424)
45 PRK05291 trmE tRNA modificatio 99.5 1E-13 2.3E-18 129.4 12.9 113 1-123 221-334 (449)
46 cd04142 RRP22 RRP22 subfamily. 99.5 1.1E-12 2.4E-17 109.6 16.8 119 1-123 6-129 (198)
47 cd01861 Rab6 Rab6 subfamily. 99.5 6.2E-13 1.3E-17 106.4 14.4 110 1-123 6-118 (161)
48 PRK11058 GTPase HflX; Provisio 99.5 3E-13 6.6E-18 125.2 13.6 117 1-123 203-322 (426)
49 COG0370 FeoB Fe2+ transport sy 99.5 3E-13 6.6E-18 128.0 13.3 120 1-131 9-129 (653)
50 PRK12296 obgE GTPase CgtA; Rev 99.5 4.2E-13 9.2E-18 125.5 13.8 116 1-123 165-297 (500)
51 cd04171 SelB SelB subfamily. 99.5 3.7E-13 8.1E-18 107.7 11.6 109 1-123 6-117 (164)
52 PRK09518 bifunctional cytidyla 99.5 3.5E-13 7.6E-18 132.6 13.8 115 1-123 281-396 (712)
53 PRK04213 GTP-binding protein; 99.5 1.5E-12 3.2E-17 108.6 15.0 113 1-123 15-143 (201)
54 cd04144 Ras2 Ras2 subfamily. 99.5 9.4E-13 2E-17 109.1 13.5 113 1-124 5-120 (190)
55 smart00175 RAB Rab subfamily o 99.5 2.7E-12 5.8E-17 102.8 15.6 112 1-124 6-119 (164)
56 cd00881 GTP_translation_factor 99.5 1.1E-12 2.5E-17 107.4 13.6 109 1-124 5-128 (189)
57 smart00173 RAS Ras subfamily o 99.5 1.7E-12 3.6E-17 104.4 14.3 112 1-124 6-119 (164)
58 KOG1547 Septin CDC10 and relat 99.5 5.4E-13 1.2E-17 111.6 11.4 117 1-123 52-197 (336)
59 cd04140 ARHI_like ARHI subfami 99.5 6.5E-13 1.4E-17 107.3 11.6 113 1-124 7-122 (165)
60 KOG1191 Mitochondrial GTPase [ 99.5 3.7E-13 7.9E-18 122.7 11.1 123 1-124 274-403 (531)
61 PRK00454 engB GTP-binding prot 99.5 2.1E-12 4.5E-17 107.0 14.7 114 1-123 30-148 (196)
62 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.3E-12 2.8E-17 109.0 13.4 166 1-200 8-192 (195)
63 cd01891 TypA_BipA TypA (tyrosi 99.5 3.4E-12 7.3E-17 106.1 15.8 108 1-123 8-130 (194)
64 cd04136 Rap_like Rap-like subf 99.5 1.1E-12 2.3E-17 105.2 12.2 112 1-124 7-120 (163)
65 cd01864 Rab19 Rab19 subfamily. 99.5 2.5E-12 5.5E-17 103.6 14.3 113 1-125 9-123 (165)
66 PF00009 GTP_EFTU: Elongation 99.5 2.9E-12 6.2E-17 106.1 14.8 160 1-202 9-188 (188)
67 cd04145 M_R_Ras_like M-Ras/R-R 99.4 1.6E-12 3.5E-17 104.2 12.9 112 1-124 8-121 (164)
68 PF00735 Septin: Septin; Inte 99.4 1E-12 2.3E-17 115.3 12.6 116 1-123 10-155 (281)
69 cd04119 RJL RJL (RabJ-Like) su 99.4 3.3E-12 7.1E-17 102.5 14.2 112 1-123 6-123 (168)
70 cd01866 Rab2 Rab2 subfamily. 99.4 3.3E-12 7.2E-17 103.5 14.1 113 1-125 10-124 (168)
71 cd01868 Rab11_like Rab11-like. 99.4 1.2E-12 2.5E-17 105.5 11.0 112 1-124 9-122 (165)
72 smart00174 RHO Rho (Ras homolo 99.4 1E-12 2.3E-17 106.6 10.5 109 1-123 4-115 (174)
73 cd04166 CysN_ATPS CysN_ATPS su 99.4 7.6E-13 1.7E-17 111.4 9.6 109 1-123 5-143 (208)
74 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1.3E-12 2.8E-17 105.2 10.4 107 1-123 6-115 (168)
75 cd04146 RERG_RasL11_like RERG/ 99.4 3E-12 6.5E-17 103.2 12.5 113 1-123 5-119 (165)
76 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 5.5E-12 1.2E-16 101.7 13.9 112 1-124 8-121 (166)
77 cd04175 Rap1 Rap1 subgroup. T 99.4 2.8E-12 6E-17 103.2 11.9 112 1-124 7-120 (164)
78 cd04176 Rap2 Rap2 subgroup. T 99.4 4.2E-12 9.1E-17 102.0 12.9 111 1-123 7-119 (163)
79 COG5019 CDC3 Septin family pro 99.4 3.6E-12 7.8E-17 113.0 13.4 118 1-124 29-176 (373)
80 cd01865 Rab3 Rab3 subfamily. 99.4 2.3E-12 5E-17 104.0 11.2 112 1-125 7-121 (165)
81 cd01889 SelB_euk SelB subfamil 99.4 3.3E-12 7E-17 106.0 12.3 108 1-123 6-133 (192)
82 cd04160 Arfrp1 Arfrp1 subfamil 99.4 2.9E-12 6.2E-17 103.3 11.6 113 1-123 5-120 (167)
83 cd01896 DRG The developmentall 99.4 4.7E-12 1E-16 108.5 13.5 83 1-86 6-88 (233)
84 cd04113 Rab4 Rab4 subfamily. 99.4 7.6E-12 1.6E-16 100.3 13.9 112 1-124 6-119 (161)
85 cd01867 Rab8_Rab10_Rab13_like 99.4 3.1E-12 6.7E-17 103.5 11.6 111 1-124 9-122 (167)
86 TIGR00437 feoB ferrous iron tr 99.4 2.2E-12 4.7E-17 124.1 12.5 114 2-125 1-114 (591)
87 cd01874 Cdc42 Cdc42 subfamily. 99.4 2.1E-12 4.6E-17 105.7 10.7 109 1-123 7-118 (175)
88 cd04120 Rab12 Rab12 subfamily. 99.4 2.8E-12 6E-17 107.6 11.5 110 1-124 6-119 (202)
89 cd04123 Rab21 Rab21 subfamily. 99.4 3.7E-12 7.9E-17 101.6 11.8 111 1-124 6-119 (162)
90 cd01860 Rab5_related Rab5-rela 99.4 2.2E-12 4.9E-17 103.4 10.5 111 1-124 7-120 (163)
91 PRK09554 feoB ferrous iron tra 99.4 3E-12 6.5E-17 126.1 13.3 117 1-126 9-128 (772)
92 cd00154 Rab Rab family. Rab G 99.4 2.8E-12 6.1E-17 101.3 10.8 111 1-123 6-118 (159)
93 cd04112 Rab26 Rab26 subfamily. 99.4 8.6E-12 1.9E-16 103.4 13.8 112 1-124 6-120 (191)
94 KOG1489 Predicted GTP-binding 99.4 2E-12 4.3E-17 112.3 10.2 116 1-123 202-325 (366)
95 cd04106 Rab23_lke Rab23-like s 99.4 7.4E-12 1.6E-16 100.3 12.9 113 1-127 6-123 (162)
96 smart00178 SAR Sar1p-like memb 99.4 9.6E-12 2.1E-16 102.6 13.8 108 1-123 23-131 (184)
97 cd04138 H_N_K_Ras_like H-Ras/N 99.4 4.3E-12 9.3E-17 101.2 11.3 110 1-123 7-119 (162)
98 cd04122 Rab14 Rab14 subfamily. 99.4 8.4E-12 1.8E-16 100.8 12.9 113 1-126 8-123 (166)
99 cd01876 YihA_EngB The YihA (En 99.4 1.3E-11 2.8E-16 98.7 13.8 114 1-123 5-123 (170)
100 cd04158 ARD1 ARD1 subfamily. 99.4 6.2E-12 1.3E-16 102.1 12.0 108 1-123 5-113 (169)
101 cd00157 Rho Rho (Ras homology) 99.4 2.1E-12 4.6E-17 104.2 9.2 110 1-124 6-118 (171)
102 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 7E-12 1.5E-16 102.3 12.3 112 1-124 8-121 (172)
103 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 1.3E-11 2.8E-16 103.2 14.1 112 1-124 6-124 (201)
104 cd01893 Miro1 Miro1 subfamily. 99.4 5.1E-12 1.1E-16 102.2 11.2 109 1-124 6-117 (166)
105 CHL00071 tufA elongation facto 99.4 1.9E-11 4.1E-16 113.1 16.2 108 1-123 18-141 (409)
106 PLN03118 Rab family protein; P 99.4 5.7E-12 1.2E-16 106.2 11.6 111 1-124 20-134 (211)
107 cd00876 Ras Ras family. The R 99.4 1E-11 2.2E-16 98.8 12.3 112 1-124 5-118 (160)
108 PF00350 Dynamin_N: Dynamin fa 99.4 2.2E-12 4.8E-17 104.4 8.6 109 1-120 4-168 (168)
109 cd04109 Rab28 Rab28 subfamily. 99.4 6.5E-12 1.4E-16 106.2 11.8 113 1-124 6-123 (215)
110 cd04126 Rab20 Rab20 subfamily. 99.4 2.2E-11 4.7E-16 103.5 15.0 108 1-124 6-114 (220)
111 cd04157 Arl6 Arl6 subfamily. 99.4 7.1E-12 1.5E-16 100.2 11.3 112 1-123 5-117 (162)
112 cd04124 RabL2 RabL2 subfamily. 99.4 5.6E-12 1.2E-16 101.5 10.6 109 1-123 6-117 (161)
113 cd04134 Rho3 Rho3 subfamily. 99.4 5E-12 1.1E-16 104.7 10.5 109 1-123 6-117 (189)
114 cd04161 Arl2l1_Arl13_like Arl2 99.4 1.4E-11 3.1E-16 99.9 12.9 109 1-123 5-113 (167)
115 cd04143 Rhes_like Rhes_like su 99.4 8.4E-12 1.8E-16 107.8 12.2 113 1-124 6-127 (247)
116 COG2262 HflX GTPases [General 99.4 7.3E-12 1.6E-16 112.5 12.1 118 1-123 198-317 (411)
117 cd04117 Rab15 Rab15 subfamily. 99.4 9.1E-12 2E-16 100.3 11.6 114 1-126 6-121 (161)
118 cd04177 RSR1 RSR1 subgroup. R 99.4 1.9E-11 4.1E-16 99.0 13.3 113 1-125 7-121 (168)
119 cd01862 Rab7 Rab7 subfamily. 99.3 1.1E-11 2.4E-16 100.1 11.6 114 1-124 6-123 (172)
120 cd04154 Arl2 Arl2 subfamily. 99.3 7.2E-12 1.6E-16 102.0 10.6 108 1-123 20-128 (173)
121 cd01890 LepA LepA subfamily. 99.3 2.1E-11 4.5E-16 99.4 13.4 108 1-123 6-132 (179)
122 cd04130 Wrch_1 Wrch-1 subfamil 99.3 5.5E-12 1.2E-16 102.7 9.7 109 1-123 6-117 (173)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.3 1.2E-11 2.7E-16 98.7 11.4 108 1-123 5-113 (158)
124 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.9E-11 4.1E-16 98.9 12.6 108 1-123 5-112 (164)
125 PTZ00369 Ras-like protein; Pro 99.3 1.8E-11 3.9E-16 101.3 12.7 111 1-123 11-123 (189)
126 cd04114 Rab30 Rab30 subfamily. 99.3 9.9E-12 2.1E-16 100.3 10.8 112 1-124 13-126 (169)
127 cd04101 RabL4 RabL4 (Rab-like4 99.3 2.8E-11 6.1E-16 97.1 13.4 112 1-124 6-121 (164)
128 cd04110 Rab35 Rab35 subfamily. 99.3 1.5E-11 3.3E-16 102.7 12.2 110 1-124 12-124 (199)
129 cd04125 RabA_like RabA-like su 99.3 5.9E-12 1.3E-16 104.0 9.6 111 1-123 6-118 (188)
130 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 8.2E-12 1.8E-16 101.7 10.2 111 1-123 6-119 (170)
131 cd04135 Tc10 TC10 subfamily. 99.3 7.9E-12 1.7E-16 101.4 10.1 109 1-123 6-117 (174)
132 cd01871 Rac1_like Rac1-like su 99.3 9.5E-12 2.1E-16 101.7 10.5 109 1-123 7-118 (174)
133 cd04118 Rab24 Rab24 subfamily. 99.3 9.9E-12 2.2E-16 102.9 10.7 110 1-123 6-118 (193)
134 cd04133 Rop_like Rop subfamily 99.3 1.4E-11 3E-16 101.2 11.4 109 1-123 7-118 (176)
135 cd04131 Rnd Rnd subfamily. Th 99.3 8.4E-12 1.8E-16 102.5 10.1 109 1-123 7-118 (178)
136 cd04149 Arf6 Arf6 subfamily. 99.3 9.7E-12 2.1E-16 101.1 10.4 108 1-123 15-123 (168)
137 KOG1423 Ras-like GTPase ERA [C 99.3 8.5E-12 1.8E-16 107.9 10.4 117 1-124 78-199 (379)
138 cd04132 Rho4_like Rho4-like su 99.3 5.6E-12 1.2E-16 103.8 9.0 109 1-123 6-118 (187)
139 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 2.5E-11 5.4E-16 99.0 12.7 108 1-123 21-129 (174)
140 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1.8E-11 3.9E-16 97.9 11.6 108 1-123 5-114 (160)
141 cd00877 Ran Ran (Ras-related n 99.3 8.3E-12 1.8E-16 101.2 9.8 108 1-123 6-117 (166)
142 KOG2655 Septin family protein 99.3 9.4E-12 2E-16 111.0 10.7 118 1-124 27-172 (366)
143 cd04151 Arl1 Arl1 subfamily. 99.3 1.2E-11 2.7E-16 98.9 10.5 108 1-123 5-113 (158)
144 PF08477 Miro: Miro-like prote 99.3 2.8E-12 6E-17 97.8 6.3 111 1-121 5-119 (119)
145 cd04159 Arl10_like Arl10-like 99.3 4.2E-11 9.2E-16 94.7 13.4 110 1-123 5-114 (159)
146 cd04127 Rab27A Rab27a subfamil 99.3 5.1E-11 1.1E-15 97.3 14.2 112 1-124 10-134 (180)
147 cd04115 Rab33B_Rab33A Rab33B/R 99.3 2.3E-11 5E-16 98.7 11.9 113 1-124 8-123 (170)
148 cd04139 RalA_RalB RalA/RalB su 99.3 3.3E-11 7.1E-16 96.4 12.6 112 1-124 6-119 (164)
149 PLN03110 Rab GTPase; Provision 99.3 4.5E-11 9.8E-16 101.2 14.0 113 1-125 18-132 (216)
150 cd04121 Rab40 Rab40 subfamily. 99.3 1.8E-11 4E-16 101.6 11.2 109 1-124 12-124 (189)
151 cd01870 RhoA_like RhoA-like su 99.3 1.4E-11 3.1E-16 100.0 10.4 109 1-123 7-118 (175)
152 cd04147 Ras_dva Ras-dva subfam 99.3 1.5E-11 3.3E-16 102.5 10.8 112 1-124 5-118 (198)
153 cd04150 Arf1_5_like Arf1-Arf5- 99.3 3.5E-11 7.7E-16 96.8 12.5 108 1-123 6-114 (159)
154 cd01863 Rab18 Rab18 subfamily. 99.3 1.6E-11 3.5E-16 98.2 10.1 112 1-123 6-119 (161)
155 cd04137 RheB Rheb (Ras Homolog 99.3 2.7E-11 5.9E-16 99.0 11.6 112 1-124 7-120 (180)
156 cd00879 Sar1 Sar1 subfamily. 99.3 2.8E-11 6E-16 99.9 11.7 108 1-123 25-133 (190)
157 TIGR00231 small_GTP small GTP- 99.3 3.4E-11 7.4E-16 94.6 11.7 111 1-123 7-121 (161)
158 smart00177 ARF ARF-like small 99.3 2.3E-11 4.9E-16 99.5 11.0 107 1-123 19-127 (175)
159 PTZ00133 ADP-ribosylation fact 99.3 2.1E-11 4.6E-16 100.4 10.6 108 1-123 23-131 (182)
160 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 1.6E-11 3.5E-16 101.3 9.9 109 1-123 11-122 (182)
161 cd00882 Ras_like_GTPase Ras-li 99.3 2.1E-11 4.5E-16 94.7 10.0 111 1-124 2-116 (157)
162 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 3.2E-11 6.9E-16 99.3 11.4 110 1-123 9-122 (183)
163 cd04168 TetM_like Tet(M)-like 99.3 6.7E-11 1.5E-15 101.6 13.7 108 1-123 5-129 (237)
164 cd01886 EF-G Elongation factor 99.3 6.8E-11 1.5E-15 103.4 13.7 108 1-123 5-129 (270)
165 cd04148 RGK RGK subfamily. Th 99.3 4.3E-11 9.3E-16 101.7 12.1 112 1-125 6-121 (221)
166 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 2.6E-11 5.5E-16 103.8 10.6 109 1-123 19-130 (232)
167 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 7.4E-11 1.6E-15 100.3 12.9 109 1-123 7-118 (222)
168 cd01875 RhoG RhoG subfamily. 99.3 2.6E-11 5.6E-16 100.6 9.9 109 1-123 9-120 (191)
169 COG0536 Obg Predicted GTPase [ 99.3 5.2E-11 1.1E-15 104.7 12.0 116 1-123 165-288 (369)
170 cd04155 Arl3 Arl3 subfamily. 99.3 6.8E-11 1.5E-15 95.8 12.1 108 1-123 20-128 (173)
171 PRK09866 hypothetical protein; 99.3 1.1E-10 2.4E-15 110.7 15.0 72 44-123 231-302 (741)
172 PLN00223 ADP-ribosylation fact 99.3 1.2E-10 2.7E-15 95.8 13.7 106 1-123 23-131 (181)
173 KOG0092 GTPase Rab5/YPT51 and 99.3 2.5E-11 5.5E-16 98.4 9.1 120 1-132 11-132 (200)
174 PRK15467 ethanolamine utilizat 99.3 2.1E-11 4.6E-16 98.2 8.8 98 1-123 7-104 (158)
175 cd04116 Rab9 Rab9 subfamily. 99.3 5.7E-11 1.2E-15 96.1 11.2 112 1-123 11-127 (170)
176 PLN03108 Rab family protein; P 99.3 8.4E-11 1.8E-15 99.1 12.3 112 1-124 12-125 (210)
177 cd01892 Miro2 Miro2 subfamily. 99.3 2E-10 4.4E-15 93.3 14.0 109 1-123 10-121 (169)
178 cd01888 eIF2_gamma eIF2-gamma 99.2 7.5E-11 1.6E-15 98.9 11.5 68 43-123 83-150 (203)
179 PLN03071 GTP-binding nuclear p 99.2 4.1E-11 8.8E-16 101.7 9.8 109 1-123 19-130 (219)
180 cd04111 Rab39 Rab39 subfamily. 99.2 6.5E-11 1.4E-15 99.9 11.0 113 1-124 8-123 (211)
181 cd04167 Snu114p Snu114p subfam 99.2 1.2E-10 2.6E-15 98.3 12.5 108 1-123 6-136 (213)
182 KOG1490 GTP-binding protein CR 99.2 2.3E-11 5E-16 111.2 8.5 126 1-131 174-302 (620)
183 PLN03126 Elongation factor Tu; 99.2 3E-10 6.5E-15 106.7 16.3 129 1-148 87-230 (478)
184 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.2 1.1E-10 2.4E-15 94.9 11.3 120 1-132 28-150 (221)
185 cd04128 Spg1 Spg1p. Spg1p (se 99.2 1.9E-10 4.2E-15 94.7 13.2 109 1-123 6-117 (182)
186 cd01885 EF2 EF2 (for archaea a 99.2 2.4E-10 5.2E-15 97.1 14.0 108 1-123 6-138 (222)
187 cd04129 Rho2 Rho2 subfamily. 99.2 8.9E-11 1.9E-15 97.0 11.1 109 1-123 7-118 (187)
188 smart00176 RAN Ran (Ras-relate 99.2 9.3E-11 2E-15 98.2 11.2 109 1-123 1-112 (200)
189 cd04170 EF-G_bact Elongation f 99.2 2.2E-10 4.8E-15 100.1 13.5 108 1-123 5-129 (268)
190 PLN03127 Elongation factor Tu; 99.2 4.2E-10 9.2E-15 105.0 16.0 108 1-123 67-190 (447)
191 cd04102 RabL3 RabL3 (Rab-like3 99.2 3E-10 6.5E-15 95.2 13.5 112 1-124 6-143 (202)
192 cd04105 SR_beta Signal recogni 99.2 2.4E-10 5.2E-15 95.9 12.8 110 1-123 6-122 (203)
193 PRK12736 elongation factor Tu; 99.2 4.2E-10 9.1E-15 103.7 15.5 166 1-202 18-202 (394)
194 cd04169 RF3 RF3 subfamily. Pe 99.2 3.7E-10 8.1E-15 98.6 14.1 108 1-123 8-136 (267)
195 TIGR00475 selB selenocysteine- 99.2 5.6E-10 1.2E-14 107.5 16.4 109 1-123 6-116 (581)
196 PRK12317 elongation factor 1-a 99.2 1.5E-10 3.1E-15 107.8 11.3 110 1-123 12-152 (425)
197 KOG0084 GTPase Rab1/YPT1, smal 99.2 2.5E-10 5.4E-15 93.0 11.1 118 1-130 15-134 (205)
198 smart00053 DYNc Dynamin, GTPas 99.2 4.2E-10 9.2E-15 96.5 12.8 74 44-124 126-206 (240)
199 cd04103 Centaurin_gamma Centau 99.2 1.2E-09 2.7E-14 87.8 14.9 104 1-123 6-112 (158)
200 PF00071 Ras: Ras family; Int 99.2 2E-10 4.3E-15 92.0 10.1 117 1-130 5-124 (162)
201 PRK05306 infB translation init 99.2 2.7E-10 5.7E-15 112.2 12.8 107 1-123 296-402 (787)
202 cd01883 EF1_alpha Eukaryotic e 99.2 3.2E-10 6.9E-15 96.2 11.7 110 1-123 5-150 (219)
203 PRK12735 elongation factor Tu; 99.2 9.8E-10 2.1E-14 101.3 15.7 108 1-123 18-141 (396)
204 PRK00049 elongation factor Tu; 99.2 8.8E-10 1.9E-14 101.6 15.2 167 1-201 18-203 (396)
205 TIGR02528 EutP ethanolamine ut 99.2 1.2E-10 2.6E-15 91.5 8.2 96 1-123 6-101 (142)
206 TIGR00485 EF-Tu translation el 99.2 1.1E-09 2.5E-14 100.8 15.9 109 1-123 18-141 (394)
207 COG1163 DRG Predicted GTPase [ 99.2 1.1E-10 2.3E-15 102.0 8.1 79 1-86 69-151 (365)
208 PRK10512 selenocysteinyl-tRNA- 99.1 1.9E-09 4.1E-14 104.3 17.4 109 1-123 6-117 (614)
209 KOG0395 Ras-related GTPase [Ge 99.1 2.8E-10 6.1E-15 94.9 9.4 120 1-132 9-130 (196)
210 TIGR01394 TypA_BipA GTP-bindin 99.1 1.9E-09 4.1E-14 103.8 16.3 108 1-123 7-129 (594)
211 PRK10218 GTP-binding protein; 99.1 1.7E-09 3.6E-14 104.2 15.4 108 1-123 11-133 (607)
212 TIGR00487 IF-2 translation ini 99.1 6.6E-10 1.4E-14 106.8 12.6 107 1-123 93-200 (587)
213 cd04165 GTPBP1_like GTPBP1-lik 99.1 1.5E-09 3.2E-14 92.5 13.3 72 39-123 80-151 (224)
214 PLN00023 GTP-binding protein; 99.1 7.9E-10 1.7E-14 98.1 11.2 113 1-124 27-165 (334)
215 KOG0078 GTP-binding protein SE 99.1 2.4E-09 5.2E-14 88.3 12.6 117 1-129 18-136 (207)
216 cd01900 YchF YchF subfamily. 99.1 4.7E-10 1E-14 98.0 8.9 81 1-85 4-102 (274)
217 TIGR00484 EF-G translation elo 99.1 1.9E-09 4.2E-14 105.9 14.2 108 1-123 16-140 (689)
218 PRK12739 elongation factor G; 99.1 1.6E-09 3.5E-14 106.5 13.1 108 1-123 14-138 (691)
219 CHL00189 infB translation init 99.1 1.6E-09 3.5E-14 106.0 12.9 107 1-123 250-360 (742)
220 KOG0079 GTP-binding protein H- 99.0 2.4E-09 5.3E-14 83.4 10.5 110 1-124 14-126 (198)
221 COG1100 GTPase SAR1 and relate 99.0 2.9E-09 6.3E-14 89.7 11.9 110 1-123 11-124 (219)
222 PRK00007 elongation factor G; 99.0 2.7E-09 5.8E-14 104.9 13.3 108 1-123 16-140 (693)
223 KOG0080 GTPase Rab18, small G 99.0 1E-09 2.3E-14 86.6 8.1 121 1-133 17-140 (209)
224 PF10662 PduV-EutP: Ethanolami 99.0 6.6E-10 1.4E-14 87.4 6.8 94 1-123 7-102 (143)
225 KOG0087 GTPase Rab11/YPT3, sma 99.0 1.1E-09 2.5E-14 90.1 8.1 118 1-130 20-139 (222)
226 TIGR02836 spore_IV_A stage IV 99.0 2.3E-09 4.9E-14 97.3 10.6 116 1-122 23-192 (492)
227 TIGR00491 aIF-2 translation in 99.0 2.5E-09 5.5E-14 102.7 11.6 107 1-123 10-134 (590)
228 PTZ00258 GTP-binding protein; 99.0 1.5E-09 3.2E-14 99.1 9.1 78 1-85 27-125 (390)
229 KOG0098 GTPase Rab2, small G p 99.0 6.8E-09 1.5E-13 84.0 11.8 119 1-131 12-132 (216)
230 PRK09601 GTP-binding protein Y 99.0 1.7E-09 3.7E-14 97.6 9.4 81 1-85 8-106 (364)
231 PF00025 Arf: ADP-ribosylation 99.0 1.5E-09 3.1E-14 89.0 8.1 107 1-123 20-128 (175)
232 TIGR00503 prfC peptide chain r 99.0 8.4E-09 1.8E-13 98.1 14.2 108 1-123 17-145 (527)
233 PRK05506 bifunctional sulfate 99.0 1.8E-09 3.9E-14 105.2 9.6 109 1-123 30-170 (632)
234 TIGR01393 lepA GTP-binding pro 99.0 8.6E-09 1.9E-13 99.5 14.0 108 1-123 9-135 (595)
235 cd01873 RhoBTB RhoBTB subfamil 99.0 4.5E-09 9.8E-14 87.6 10.6 109 1-123 8-133 (195)
236 cd01882 BMS1 Bms1. Bms1 is an 99.0 1E-08 2.2E-13 87.4 12.9 100 1-123 45-146 (225)
237 TIGR02034 CysN sulfate adenyly 98.9 6.1E-09 1.3E-13 96.3 11.2 109 1-123 6-146 (406)
238 cd01899 Ygr210 Ygr210 subfamil 98.9 3.2E-09 6.9E-14 94.9 8.8 79 1-86 4-110 (318)
239 TIGR00483 EF-1_alpha translati 98.9 4.2E-09 9.2E-14 98.0 10.0 110 1-123 13-154 (426)
240 PRK13351 elongation factor G; 98.9 1.4E-08 3E-13 99.9 13.6 108 1-123 14-138 (687)
241 PRK05124 cysN sulfate adenylyl 98.9 9.9E-09 2.1E-13 96.6 12.0 109 1-123 33-173 (474)
242 PTZ00141 elongation factor 1- 98.9 1.4E-08 3E-13 94.9 13.0 109 1-122 13-157 (446)
243 PRK00741 prfC peptide chain re 98.9 1.6E-08 3.4E-13 96.3 13.3 108 1-123 16-144 (526)
244 PTZ00132 GTP-binding nuclear p 98.9 9.1E-09 2E-13 86.8 10.1 108 1-123 15-126 (215)
245 PRK05433 GTP-binding protein L 98.9 2.3E-08 5E-13 96.6 14.1 108 1-123 13-139 (600)
246 PRK12740 elongation factor G; 98.9 2.3E-08 5.1E-13 98.1 14.2 108 1-123 1-125 (668)
247 cd01851 GBP Guanylate-binding 98.9 9.4E-08 2E-12 81.4 15.3 96 1-103 13-116 (224)
248 KOG0095 GTPase Rab30, small G 98.9 1.6E-07 3.5E-12 73.4 15.0 113 1-125 13-127 (213)
249 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.2E-08 2.7E-13 87.0 9.8 118 1-123 5-124 (232)
250 KOG0394 Ras-related GTPase [Ge 98.9 8.7E-09 1.9E-13 83.2 8.0 113 1-123 15-131 (210)
251 KOG1707 Predicted Ras related/ 98.9 2E-08 4.3E-13 93.8 11.3 119 1-132 15-137 (625)
252 PRK04004 translation initiatio 98.9 1.5E-08 3.3E-13 97.5 10.9 107 1-123 12-136 (586)
253 TIGR03680 eif2g_arch translati 98.9 3.2E-08 6.9E-13 91.6 12.6 69 42-123 79-147 (406)
254 PRK04000 translation initiatio 98.8 1.9E-08 4E-13 93.2 10.7 68 43-123 85-152 (411)
255 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 5.1E-09 1.1E-13 82.6 5.4 51 1-54 89-139 (141)
256 PRK09602 translation-associate 98.8 1.8E-08 3.8E-13 92.7 9.3 79 1-86 7-113 (396)
257 PF09439 SRPRB: Signal recogni 98.8 2.2E-08 4.7E-13 82.1 8.5 111 1-124 9-126 (181)
258 PTZ00416 elongation factor 2; 98.8 4.5E-08 9.8E-13 98.0 12.4 108 1-123 25-157 (836)
259 KOG0073 GTP-binding ADP-ribosy 98.8 5E-08 1.1E-12 77.4 9.9 107 1-123 22-130 (185)
260 PF03193 DUF258: Protein of un 98.8 1.4E-09 3.1E-14 87.3 1.2 56 1-59 41-103 (161)
261 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.3E-08 2.9E-13 89.8 7.0 59 1-62 127-185 (287)
262 PRK12289 GTPase RsgA; Reviewed 98.8 7.1E-09 1.5E-13 93.8 5.1 55 1-58 178-239 (352)
263 PLN00043 elongation factor 1-a 98.8 1.7E-07 3.6E-12 87.7 14.4 110 1-123 13-158 (447)
264 PRK12288 GTPase RsgA; Reviewed 98.8 9.9E-09 2.2E-13 92.8 5.5 56 1-59 211-273 (347)
265 COG1162 Predicted GTPases [Gen 98.7 1.1E-08 2.4E-13 89.5 5.2 55 1-58 170-231 (301)
266 TIGR03596 GTPase_YlqF ribosome 98.7 2.3E-08 4.9E-13 87.9 7.3 58 1-61 124-181 (276)
267 COG1217 TypA Predicted membran 98.7 1.1E-07 2.4E-12 86.8 11.7 169 5-204 15-198 (603)
268 TIGR00490 aEF-2 translation el 98.7 4.5E-08 9.8E-13 96.7 10.0 108 1-123 25-151 (720)
269 KOG0093 GTPase Rab3, small G p 98.7 3.2E-07 7E-12 71.6 12.4 113 1-126 27-142 (193)
270 TIGR00157 ribosome small subun 98.7 1.8E-08 3.9E-13 87.0 5.3 54 1-58 126-186 (245)
271 COG5256 TEF1 Translation elong 98.7 8.7E-08 1.9E-12 86.5 9.5 176 1-204 13-226 (428)
272 COG1161 Predicted GTPases [Gen 98.6 3.8E-08 8.2E-13 88.2 5.7 57 1-60 138-194 (322)
273 KOG2486 Predicted GTPase [Gene 98.6 1.9E-07 4.2E-12 80.3 9.2 114 1-123 142-261 (320)
274 PTZ00327 eukaryotic translatio 98.6 4.9E-07 1.1E-11 84.7 12.8 68 43-123 117-184 (460)
275 KOG3859 Septins (P-loop GTPase 98.6 1.5E-07 3.3E-12 80.8 8.5 138 1-149 48-210 (406)
276 KOG0088 GTPase Rab21, small G 98.6 5.3E-08 1.2E-12 76.8 5.2 113 1-127 19-135 (218)
277 TIGR01425 SRP54_euk signal rec 98.6 7.8E-07 1.7E-11 82.2 13.3 72 42-124 182-253 (429)
278 PLN00116 translation elongatio 98.6 3.4E-07 7.5E-12 91.9 11.7 108 1-123 25-163 (843)
279 KOG3883 Ras family small GTPas 98.6 7.3E-07 1.6E-11 70.1 10.5 119 1-128 15-136 (198)
280 TIGR03597 GTPase_YqeH ribosome 98.6 6.6E-08 1.4E-12 88.0 5.5 80 1-83 160-245 (360)
281 PRK09435 membrane ATPase/prote 98.6 6.6E-07 1.4E-11 80.3 11.7 60 41-123 147-207 (332)
282 KOG0075 GTP-binding ADP-ribosy 98.6 1E-07 2.3E-12 74.3 5.6 106 1-122 26-134 (186)
283 PRK07560 elongation factor EF- 98.6 2.5E-07 5.4E-12 91.7 9.8 108 1-123 26-152 (731)
284 KOG0393 Ras-related small GTPa 98.6 5.5E-08 1.2E-12 80.3 4.1 109 1-123 10-122 (198)
285 KOG1145 Mitochondrial translat 98.5 1.7E-06 3.8E-11 80.5 13.8 106 1-122 159-265 (683)
286 COG0012 Predicted GTPase, prob 98.5 2.6E-07 5.5E-12 82.9 7.9 79 1-86 8-108 (372)
287 PRK00098 GTPase RsgA; Reviewed 98.5 2.1E-07 4.6E-12 82.6 7.1 54 1-57 170-230 (298)
288 PRK13768 GTPase; Provisional 98.5 1.1E-06 2.3E-11 76.3 10.8 80 44-125 98-177 (253)
289 KOG0086 GTPase Rab4, small G p 98.5 1.1E-06 2.3E-11 69.1 9.6 118 1-131 15-135 (214)
290 PRK13796 GTPase YqeH; Provisio 98.5 1.3E-07 2.8E-12 86.2 4.8 53 1-56 166-223 (365)
291 TIGR00092 GTP-binding protein 98.5 6.6E-07 1.4E-11 81.0 8.8 80 1-86 8-108 (368)
292 KOG0448 Mitofusin 1 GTPase, in 98.4 1E-06 2.2E-11 83.8 9.8 67 45-123 208-274 (749)
293 COG2229 Predicted GTPase [Gene 98.4 4.3E-06 9.2E-11 67.8 11.9 123 1-148 16-149 (187)
294 cd01854 YjeQ_engC YjeQ/EngC. 98.4 3.2E-07 7E-12 81.0 6.0 54 1-57 167-227 (287)
295 KOG0462 Elongation factor-type 98.4 2.4E-06 5.3E-11 79.6 11.6 104 5-123 70-190 (650)
296 KOG0091 GTPase Rab39, small G 98.4 1.6E-06 3.4E-11 69.0 8.5 122 1-132 14-138 (213)
297 KOG1424 Predicted GTP-binding 98.4 4.4E-07 9.5E-12 83.9 5.3 57 1-60 320-376 (562)
298 COG0532 InfB Translation initi 98.4 3.7E-06 8E-11 78.4 11.0 107 1-123 11-120 (509)
299 PTZ00099 rab6; Provisional 98.4 5.1E-06 1.1E-10 68.1 10.6 75 38-124 22-99 (176)
300 COG4917 EutP Ethanolamine util 98.3 9.8E-07 2.1E-11 67.2 5.7 95 1-123 7-103 (148)
301 KOG1486 GTP-binding protein DR 98.3 5.9E-07 1.3E-11 76.3 4.6 99 1-106 68-167 (364)
302 KOG0410 Predicted GTP binding 98.3 8.9E-07 1.9E-11 77.7 5.0 120 1-123 184-307 (410)
303 KOG1954 Endocytosis/signaling 98.3 7.4E-06 1.6E-10 73.2 10.0 72 45-123 149-224 (532)
304 KOG0097 GTPase Rab14, small G 98.2 1E-05 2.2E-10 62.8 9.3 118 1-132 17-138 (215)
305 PF03029 ATP_bind_1: Conserved 98.2 6.8E-07 1.5E-11 76.8 2.7 76 44-124 92-170 (238)
306 KOG0083 GTPase Rab26/Rab37, sm 98.2 3.4E-07 7.3E-12 70.3 0.7 115 1-127 3-120 (192)
307 PRK14845 translation initiatio 98.2 2.8E-05 6.1E-10 79.0 13.5 102 6-123 472-591 (1049)
308 KOG1491 Predicted GTP-binding 98.2 3.9E-06 8.4E-11 74.2 6.2 79 1-86 26-125 (391)
309 COG2895 CysN GTPases - Sulfate 98.2 2.5E-05 5.5E-10 69.5 11.3 129 40-200 83-214 (431)
310 TIGR03348 VI_IcmF type VI secr 98.1 1.7E-05 3.7E-10 82.4 11.5 115 1-123 117-256 (1169)
311 COG0480 FusA Translation elong 98.1 1.9E-05 4E-10 77.3 11.1 108 1-123 16-141 (697)
312 TIGR00750 lao LAO/AO transport 98.1 3.3E-05 7.2E-10 68.7 11.8 60 41-123 125-185 (300)
313 KOG0458 Elongation factor 1 al 98.1 1.4E-05 2.9E-10 75.1 9.5 180 1-204 183-400 (603)
314 KOG0070 GTP-binding ADP-ribosy 98.1 7.2E-06 1.6E-10 66.5 6.3 114 1-133 23-139 (181)
315 KOG0447 Dynamin-like GTP bindi 98.1 3.9E-05 8.4E-10 71.7 11.6 75 44-124 413-493 (980)
316 PF00448 SRP54: SRP54-type pro 98.1 1.4E-06 3E-11 72.7 1.7 71 42-123 83-153 (196)
317 KOG0077 Vesicle coat complex C 98.1 2.1E-05 4.5E-10 62.8 8.0 108 1-123 26-134 (193)
318 KOG1532 GTPase XAB1, interacts 98.0 1.2E-05 2.6E-10 69.3 6.4 76 43-123 116-194 (366)
319 KOG2485 Conserved ATP/GTP bind 98.0 7E-06 1.5E-10 71.8 4.9 62 1-62 149-215 (335)
320 KOG0090 Signal recognition par 98.0 4.2E-05 9.2E-10 63.6 9.2 111 1-124 44-159 (238)
321 PRK11889 flhF flagellar biosyn 98.0 5.6E-06 1.2E-10 75.5 4.4 72 42-124 320-391 (436)
322 PRK12726 flagellar biosynthesi 98.0 5.9E-05 1.3E-09 68.6 10.4 71 42-123 285-355 (407)
323 KOG3886 GTP-binding protein [S 97.9 4E-05 8.6E-10 64.6 7.8 113 1-126 10-132 (295)
324 TIGR00064 ftsY signal recognit 97.9 2.2E-05 4.7E-10 68.9 6.3 73 41-124 153-231 (272)
325 PRK14722 flhF flagellar biosyn 97.9 3.6E-05 7.8E-10 70.2 7.5 78 41-123 214-294 (374)
326 KOG4252 GTP-binding protein [S 97.9 5.2E-06 1.1E-10 67.0 1.8 108 1-123 26-137 (246)
327 PRK10416 signal recognition pa 97.8 0.0002 4.4E-09 64.1 11.3 72 41-123 195-272 (318)
328 PRK14974 cell division protein 97.8 2.4E-05 5.1E-10 70.5 5.1 72 42-124 222-293 (336)
329 KOG0081 GTPase Rab27, small G 97.8 5E-05 1.1E-09 60.3 6.2 111 1-124 15-138 (219)
330 KOG0071 GTP-binding ADP-ribosy 97.8 0.00018 3.8E-09 56.0 9.1 114 1-132 23-138 (180)
331 PRK12727 flagellar biosynthesi 97.8 0.00018 4E-09 68.0 10.9 17 1-17 356-372 (559)
332 COG0050 TufB GTPases - transla 97.8 0.00021 4.4E-09 62.4 10.2 166 1-201 18-201 (394)
333 KOG0074 GTP-binding ADP-ribosy 97.8 0.00012 2.5E-09 57.1 7.6 108 1-123 23-132 (185)
334 PRK14721 flhF flagellar biosyn 97.8 0.0001 2.2E-09 68.3 8.5 73 41-124 268-340 (420)
335 COG1419 FlhF Flagellar GTP-bin 97.7 7.1E-05 1.5E-09 68.2 6.6 70 42-123 281-351 (407)
336 COG0481 LepA Membrane GTPase L 97.7 0.0002 4.3E-09 66.2 9.4 104 5-123 19-141 (603)
337 PRK14723 flhF flagellar biosyn 97.7 0.00011 2.3E-09 72.5 7.9 74 41-123 262-336 (767)
338 KOG1144 Translation initiation 97.7 0.00025 5.4E-09 68.6 9.7 106 1-122 481-604 (1064)
339 COG4108 PrfC Peptide chain rel 97.7 0.00049 1.1E-08 63.0 10.8 105 3-122 20-145 (528)
340 KOG0461 Selenocysteine-specifi 97.6 0.0016 3.4E-08 58.2 13.0 165 1-202 13-194 (522)
341 KOG2423 Nucleolar GTPase [Gene 97.6 1.8E-05 3.9E-10 71.3 0.9 54 1-57 313-366 (572)
342 COG3276 SelB Selenocysteine-sp 97.6 0.00053 1.1E-08 62.9 10.3 109 2-124 7-117 (447)
343 PRK06731 flhF flagellar biosyn 97.6 0.00022 4.8E-09 62.3 7.7 72 42-124 154-225 (270)
344 PF03308 ArgK: ArgK protein; 97.6 0.00019 4.1E-09 61.9 6.9 59 41-122 120-179 (266)
345 KOG2484 GTPase [General functi 97.6 3.4E-05 7.3E-10 69.6 2.4 54 1-57 258-311 (435)
346 cd03115 SRP The signal recogni 97.6 0.0013 2.9E-08 53.3 11.6 72 42-124 82-153 (173)
347 cd03112 CobW_like The function 97.6 0.00022 4.7E-09 57.4 6.5 18 1-18 6-23 (158)
348 PRK05703 flhF flagellar biosyn 97.6 9.6E-05 2.1E-09 68.8 5.0 71 42-123 299-370 (424)
349 PRK12723 flagellar biosynthesi 97.6 0.00068 1.5E-08 62.3 10.4 72 41-123 253-325 (388)
350 PRK12724 flagellar biosynthesi 97.5 6.1E-05 1.3E-09 69.4 3.1 72 41-123 298-372 (432)
351 PRK00771 signal recognition pa 97.5 0.00013 2.9E-09 67.9 4.7 70 43-123 176-245 (437)
352 PRK01889 GTPase RsgA; Reviewed 97.5 6.2E-05 1.3E-09 68.5 2.4 54 1-57 201-261 (356)
353 COG5257 GCD11 Translation init 97.4 0.0011 2.5E-08 58.5 9.3 125 43-210 86-211 (415)
354 PRK10867 signal recognition pa 97.4 0.0013 2.9E-08 61.2 10.2 71 42-123 183-253 (433)
355 COG5192 BMS1 GTP-binding prote 97.3 0.0014 3E-08 61.9 9.4 101 1-123 75-176 (1077)
356 COG3523 IcmF Type VI protein s 97.3 0.00089 1.9E-08 68.8 8.8 120 1-124 131-270 (1188)
357 cd02038 FleN-like FleN is a me 97.3 0.004 8.6E-08 48.8 10.5 96 2-122 7-109 (139)
358 PRK06995 flhF flagellar biosyn 97.2 0.00046 9.9E-09 65.0 5.0 18 1-18 262-279 (484)
359 KOG0468 U5 snRNP-specific prot 97.2 0.0021 4.5E-08 61.8 8.7 107 1-122 134-261 (971)
360 TIGR00959 ffh signal recogniti 97.1 0.0034 7.3E-08 58.5 10.1 71 42-123 182-252 (428)
361 cd03111 CpaE_like This protein 97.1 0.0057 1.2E-07 45.6 9.4 93 2-119 7-106 (106)
362 KOG1487 GTP-binding protein DR 97.1 0.00031 6.8E-09 60.3 2.3 111 1-121 65-180 (358)
363 cd03114 ArgK-like The function 97.1 0.0059 1.3E-07 48.5 9.4 17 1-17 5-21 (148)
364 KOG0076 GTP-binding ADP-ribosy 97.0 0.00071 1.5E-08 54.6 3.8 110 1-123 23-139 (197)
365 COG0194 Gmk Guanylate kinase [ 97.0 0.00036 7.8E-09 57.1 2.0 47 1-50 10-56 (191)
366 PF06858 NOG1: Nucleolar GTP-b 96.9 0.0027 5.8E-08 41.8 5.2 44 75-121 13-58 (58)
367 COG1703 ArgK Putative periplas 96.9 0.0046 9.9E-08 54.3 8.0 59 41-122 142-201 (323)
368 PF05673 DUF815: Protein of un 96.9 0.0037 8E-08 53.6 7.1 91 2-120 59-149 (249)
369 cd02036 MinD Bacterial cell di 96.8 0.026 5.6E-07 45.5 11.2 63 44-122 64-126 (179)
370 KOG0780 Signal recognition par 96.7 0.0045 9.8E-08 56.1 6.9 42 41-85 182-223 (483)
371 KOG1707 Predicted Ras related/ 96.6 0.018 4E-07 54.7 10.1 107 1-123 431-539 (625)
372 KOG0467 Translation elongation 96.6 0.0065 1.4E-07 59.2 7.3 103 5-122 19-136 (887)
373 KOG0465 Mitochondrial elongati 96.6 0.0022 4.7E-08 61.0 3.7 104 5-123 49-169 (721)
374 PRK14737 gmk guanylate kinase; 96.5 0.0025 5.3E-08 52.7 3.5 47 1-49 10-56 (186)
375 KOG0464 Elongation factor G [T 96.4 0.0022 4.7E-08 58.5 2.6 105 4-123 46-167 (753)
376 cd03222 ABC_RNaseL_inhibitor T 96.4 0.06 1.3E-06 44.1 11.0 19 1-19 31-49 (177)
377 PRK08472 fliI flagellum-specif 96.4 0.0012 2.7E-08 61.3 1.2 83 1-86 163-256 (434)
378 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.031 6.7E-07 39.7 8.3 64 2-86 6-69 (99)
379 KOG0096 GTPase Ran/TC4/GSP1 (n 96.4 0.0092 2E-07 49.0 5.7 108 1-123 16-127 (216)
380 PF00004 AAA: ATPase family as 96.3 0.016 3.4E-07 44.1 6.9 97 1-121 4-111 (132)
381 cd00071 GMPK Guanosine monopho 96.3 0.0038 8.3E-08 48.9 3.4 51 1-53 5-56 (137)
382 cd02042 ParA ParA and ParB of 96.3 0.033 7.1E-07 40.9 8.3 66 2-86 7-72 (104)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.053 1.1E-06 42.7 9.8 19 1-19 32-50 (144)
384 cd03230 ABC_DR_subfamily_A Thi 96.2 0.038 8.3E-07 44.8 9.0 19 1-19 32-50 (173)
385 PF13555 AAA_29: P-loop contai 96.2 0.003 6.5E-08 42.5 1.9 16 1-16 29-44 (62)
386 KOG0460 Mitochondrial translat 96.2 0.038 8.3E-07 49.5 9.0 128 1-148 60-203 (449)
387 TIGR03263 guanyl_kin guanylate 96.1 0.0029 6.4E-08 51.4 2.0 50 1-52 7-56 (180)
388 PF05879 RHD3: Root hair defec 96.1 0.029 6.3E-07 55.9 9.3 122 1-122 1-134 (742)
389 cd00066 G-alpha G protein alph 96.1 0.018 4E-07 51.6 6.9 82 33-123 151-241 (317)
390 PF02263 GBP: Guanylate-bindin 96.1 0.027 5.9E-07 49.0 7.7 56 1-56 27-87 (260)
391 COG1116 TauB ABC-type nitrate/ 96.0 0.0037 8.1E-08 53.5 2.0 20 1-20 35-54 (248)
392 PRK14738 gmk guanylate kinase; 95.9 0.0063 1.4E-07 51.0 3.1 19 1-19 19-37 (206)
393 KOG0446 Vacuolar sorting prote 95.9 0.0039 8.4E-08 61.0 2.0 75 44-124 133-213 (657)
394 KOG3887 Predicted small GTPase 95.8 0.023 4.9E-07 48.6 5.8 112 1-123 33-148 (347)
395 KOG1533 Predicted GTPase [Gene 95.8 0.011 2.3E-07 50.3 3.8 16 1-16 8-23 (290)
396 COG1136 SalX ABC-type antimicr 95.8 0.0055 1.2E-07 52.0 2.0 20 1-20 37-56 (226)
397 PHA02518 ParA-like protein; Pr 95.7 0.048 1E-06 45.2 7.7 67 42-121 76-144 (211)
398 PRK11537 putative GTP-binding 95.7 0.021 4.5E-07 51.3 5.7 17 2-18 11-27 (318)
399 COG0552 FtsY Signal recognitio 95.7 0.024 5.1E-07 50.7 5.8 75 41-123 220-297 (340)
400 COG0541 Ffh Signal recognition 95.7 0.026 5.7E-07 52.0 6.3 71 41-122 181-251 (451)
401 COG3840 ThiQ ABC-type thiamine 95.7 0.0057 1.2E-07 50.2 1.7 19 1-19 31-49 (231)
402 PRK00300 gmk guanylate kinase; 95.7 0.008 1.7E-07 50.0 2.7 19 1-19 11-29 (205)
403 PF00005 ABC_tran: ABC transpo 95.6 0.0053 1.1E-07 47.5 1.4 19 1-19 17-35 (137)
404 KOG2749 mRNA cleavage and poly 95.6 0.03 6.5E-07 50.4 6.2 62 46-123 215-276 (415)
405 KOG1534 Putative transcription 95.6 0.0096 2.1E-07 49.9 2.9 75 44-123 99-177 (273)
406 smart00275 G_alpha G protein a 95.6 0.042 9.1E-07 49.8 7.3 83 32-123 173-264 (342)
407 KOG1143 Predicted translation 95.5 0.019 4.1E-07 52.0 4.6 70 44-126 250-319 (591)
408 KOG0072 GTP-binding ADP-ribosy 95.5 0.016 3.4E-07 45.6 3.5 107 5-122 2-131 (182)
409 KOG1673 Ras GTPases [General f 95.5 0.065 1.4E-06 42.7 6.9 110 1-123 26-137 (205)
410 cd01857 HSR1_MMR1 HSR1/MMR1. 95.5 0.036 7.9E-07 43.3 5.6 45 75-123 11-55 (141)
411 TIGR02858 spore_III_AA stage I 95.4 0.11 2.4E-06 45.5 8.8 19 1-19 117-135 (270)
412 cd00009 AAA The AAA+ (ATPases 95.3 0.089 1.9E-06 40.0 7.4 19 1-19 25-43 (151)
413 COG1341 Predicted GTPase or GT 95.3 0.033 7.1E-07 50.9 5.4 18 1-18 79-96 (398)
414 COG1124 DppF ABC-type dipeptid 95.3 0.02 4.4E-07 48.9 3.9 20 1-20 39-58 (252)
415 cd03225 ABC_cobalt_CbiO_domain 95.3 0.011 2.3E-07 49.5 2.0 19 1-19 33-51 (211)
416 cd03261 ABC_Org_Solvent_Resist 95.2 0.011 2.4E-07 50.3 2.0 19 1-19 32-50 (235)
417 cd01858 NGP_1 NGP-1. Autoanti 95.1 0.039 8.4E-07 43.9 4.7 45 75-123 8-52 (157)
418 COG3839 MalK ABC-type sugar tr 95.1 0.013 2.7E-07 52.8 2.0 19 1-19 35-53 (338)
419 cd03213 ABCG_EPDR ABCG transpo 95.0 0.21 4.5E-06 41.3 9.2 19 1-19 41-59 (194)
420 TIGR01166 cbiO cobalt transpor 95.0 0.014 3E-07 48.1 2.0 19 1-19 24-42 (190)
421 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.013 2.9E-07 49.2 2.0 19 1-19 36-54 (218)
422 TIGR00960 3a0501s02 Type II (G 95.0 0.013 2.9E-07 49.2 1.9 19 1-19 35-53 (216)
423 cd03293 ABC_NrtD_SsuB_transpor 95.0 0.013 2.9E-07 49.3 2.0 19 1-19 36-54 (220)
424 cd03265 ABC_DrrA DrrA is the A 95.0 0.014 2.9E-07 49.3 2.0 19 1-19 32-50 (220)
425 cd02037 MRP-like MRP (Multiple 95.0 0.23 5.1E-06 39.9 9.2 67 41-122 66-133 (169)
426 TIGR02673 FtsE cell division A 95.0 0.014 3E-07 48.9 2.0 19 1-19 34-52 (214)
427 cd03264 ABC_drug_resistance_li 94.9 0.015 3.2E-07 48.7 2.0 19 1-19 31-49 (211)
428 cd03260 ABC_PstB_phosphate_tra 94.9 0.014 3E-07 49.4 1.8 19 1-19 32-50 (227)
429 cd03226 ABC_cobalt_CbiO_domain 94.9 0.015 3.2E-07 48.5 1.9 19 1-19 32-50 (205)
430 cd03259 ABC_Carb_Solutes_like 94.9 0.016 3.5E-07 48.5 2.0 19 1-19 32-50 (213)
431 cd03224 ABC_TM1139_LivF_branch 94.9 0.016 3.4E-07 48.8 2.0 19 1-19 32-50 (222)
432 cd01130 VirB11-like_ATPase Typ 94.8 0.015 3.3E-07 47.8 1.8 19 1-19 31-49 (186)
433 cd03238 ABC_UvrA The excision 94.8 0.015 3.4E-07 47.5 1.8 17 1-17 27-43 (176)
434 KOG4181 Uncharacterized conser 94.8 0.12 2.5E-06 46.6 7.3 19 1-19 194-212 (491)
435 PRK13900 type IV secretion sys 94.8 0.063 1.4E-06 48.5 5.8 19 1-19 166-184 (332)
436 TIGR03608 L_ocin_972_ABC putat 94.8 0.017 3.7E-07 48.0 2.0 19 1-19 30-48 (206)
437 cd03263 ABC_subfamily_A The AB 94.8 0.017 3.7E-07 48.6 2.0 19 1-19 34-52 (220)
438 TIGR02315 ABC_phnC phosphonate 94.8 0.017 3.7E-07 49.4 2.0 19 1-19 34-52 (243)
439 smart00010 small_GTPase Small 94.8 0.11 2.3E-06 38.8 6.3 18 1-18 6-23 (124)
440 cd03269 ABC_putative_ATPase Th 94.8 0.018 3.8E-07 48.2 2.1 19 1-19 32-50 (210)
441 cd03258 ABC_MetN_methionine_tr 94.8 0.017 3.7E-07 49.1 1.9 19 1-19 37-55 (233)
442 cd03262 ABC_HisP_GlnQ_permease 94.8 0.018 3.8E-07 48.2 2.0 19 1-19 32-50 (213)
443 cd03292 ABC_FtsE_transporter F 94.8 0.017 3.7E-07 48.3 2.0 19 1-19 33-51 (214)
444 PRK15177 Vi polysaccharide exp 94.8 0.018 3.8E-07 48.5 2.0 19 1-19 19-37 (213)
445 cd03110 Fer4_NifH_child This p 94.7 0.18 3.9E-06 40.9 7.9 66 41-123 91-156 (179)
446 cd03229 ABC_Class3 This class 94.7 0.018 4E-07 46.9 2.0 19 1-19 32-50 (178)
447 COG2884 FtsE Predicted ATPase 94.7 0.018 3.8E-07 47.7 1.8 20 1-20 34-53 (223)
448 TIGR02211 LolD_lipo_ex lipopro 94.7 0.018 4E-07 48.4 2.0 19 1-19 37-55 (221)
449 COG0396 sufC Cysteine desulfur 94.7 0.022 4.7E-07 48.4 2.4 22 1-22 36-57 (251)
450 cd03216 ABC_Carb_Monos_I This 94.7 0.019 4.1E-07 46.2 2.0 19 1-19 32-50 (163)
451 PRK11629 lolD lipoprotein tran 94.7 0.019 4E-07 48.9 2.0 19 1-19 41-59 (233)
452 COG1126 GlnQ ABC-type polar am 94.7 0.019 4.2E-07 48.3 2.0 20 1-20 34-53 (240)
453 cd03235 ABC_Metallic_Cations A 94.7 0.018 4E-07 48.2 1.9 19 1-19 31-49 (213)
454 cd03268 ABC_BcrA_bacitracin_re 94.7 0.019 4.2E-07 47.9 2.0 19 1-19 32-50 (208)
455 cd03256 ABC_PhnC_transporter A 94.7 0.018 4E-07 49.0 1.9 19 1-19 33-51 (241)
456 cd03218 ABC_YhbG The ABC trans 94.6 0.02 4.2E-07 48.6 2.1 19 1-19 32-50 (232)
457 cd00820 PEPCK_HprK Phosphoenol 94.6 0.019 4.1E-07 43.0 1.6 16 1-16 21-36 (107)
458 COG4148 ModC ABC-type molybdat 94.6 0.036 7.8E-07 48.5 3.5 19 1-19 30-48 (352)
459 PRK10078 ribose 1,5-bisphospho 94.6 0.02 4.4E-07 47.0 1.9 19 1-19 8-26 (186)
460 PRK13849 putative crown gall t 94.6 0.12 2.6E-06 44.2 6.7 66 42-121 83-151 (231)
461 cd03266 ABC_NatA_sodium_export 94.5 0.021 4.6E-07 47.9 2.0 19 1-19 37-55 (218)
462 cd03301 ABC_MalK_N The N-termi 94.5 0.021 4.5E-07 47.8 2.0 19 1-19 32-50 (213)
463 PRK11248 tauB taurine transpor 94.5 0.021 4.5E-07 49.5 1.9 19 1-19 33-51 (255)
464 cd03215 ABC_Carb_Monos_II This 94.5 0.023 4.9E-07 46.5 2.0 19 1-19 32-50 (182)
465 TIGR01189 ccmA heme ABC export 94.5 0.022 4.8E-07 47.2 2.0 19 1-19 32-50 (198)
466 PRK14242 phosphate transporter 94.5 0.02 4.4E-07 49.3 1.8 18 1-18 38-55 (253)
467 cd03219 ABC_Mj1267_LivG_branch 94.5 0.022 4.7E-07 48.5 2.0 19 1-19 32-50 (236)
468 cd03296 ABC_CysA_sulfate_impor 94.5 0.022 4.8E-07 48.6 2.0 19 1-19 34-52 (239)
469 cd03257 ABC_NikE_OppD_transpor 94.5 0.022 4.9E-07 48.0 2.0 19 1-19 37-55 (228)
470 TIGR02770 nickel_nikD nickel i 94.5 0.022 4.8E-07 48.4 2.0 19 1-19 18-36 (230)
471 PRK13539 cytochrome c biogenes 94.5 0.023 5E-07 47.5 2.0 19 1-19 34-52 (207)
472 TIGR01978 sufC FeS assembly AT 94.5 0.022 4.7E-07 48.7 1.9 18 1-18 32-49 (243)
473 cd03254 ABCC_Glucan_exporter_l 94.5 0.023 4.9E-07 48.1 2.0 19 1-19 35-53 (229)
474 PRK13851 type IV secretion sys 94.4 0.096 2.1E-06 47.5 6.1 19 1-19 168-186 (344)
475 cd03236 ABC_RNaseL_inhibitor_d 94.4 0.023 5.1E-07 49.3 2.0 19 1-19 32-50 (255)
476 COG4988 CydD ABC-type transpor 94.4 0.022 4.8E-07 54.2 2.0 20 1-20 353-372 (559)
477 TIGR03864 PQQ_ABC_ATP ABC tran 94.4 0.023 5E-07 48.4 2.0 19 1-19 33-51 (236)
478 cd03297 ABC_ModC_molybdenum_tr 94.4 0.023 5E-07 47.6 1.9 19 1-19 29-47 (214)
479 PLN02772 guanylate kinase 94.4 0.037 7.9E-07 50.8 3.3 47 1-49 141-188 (398)
480 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.023 5E-07 49.1 1.9 18 1-18 36-53 (254)
481 PRK10584 putative ABC transpor 94.4 0.024 5.2E-07 48.0 2.0 19 1-19 42-60 (228)
482 cd03294 ABC_Pro_Gly_Bertaine T 94.4 0.024 5.1E-07 49.5 2.0 19 1-19 56-74 (269)
483 TIGR01184 ntrCD nitrate transp 94.4 0.024 5.3E-07 48.2 2.1 19 1-19 17-35 (230)
484 COG0378 HypB Ni2+-binding GTPa 94.4 0.066 1.4E-06 44.3 4.4 28 106-133 138-165 (202)
485 COG0523 Putative GTPases (G3E 94.4 0.079 1.7E-06 47.6 5.3 69 43-124 85-159 (323)
486 PRK13541 cytochrome c biogenes 94.4 0.025 5.4E-07 46.8 2.0 19 1-19 32-50 (195)
487 PRK11124 artP arginine transpo 94.4 0.025 5.4E-07 48.4 2.0 19 1-19 34-52 (242)
488 cd03214 ABC_Iron-Siderophores_ 94.4 0.025 5.4E-07 46.2 2.0 19 1-19 31-49 (180)
489 PRK11264 putative amino-acid A 94.4 0.024 5.2E-07 48.7 2.0 19 1-19 35-53 (250)
490 PRK14247 phosphate ABC transpo 94.3 0.023 5E-07 48.8 1.9 19 1-19 35-53 (250)
491 COG1120 FepC ABC-type cobalami 94.3 0.024 5.3E-07 49.1 2.0 18 1-18 34-51 (258)
492 PRK10908 cell division protein 94.3 0.024 5.3E-07 47.8 2.0 19 1-19 34-52 (222)
493 COG1131 CcmA ABC-type multidru 94.3 0.024 5.3E-07 50.2 2.0 20 1-20 37-56 (293)
494 PRK07952 DNA replication prote 94.3 0.099 2.1E-06 45.1 5.7 18 1-18 105-122 (244)
495 TIGR03410 urea_trans_UrtE urea 94.3 0.025 5.5E-07 47.9 2.0 19 1-19 32-50 (230)
496 smart00072 GuKc Guanylate kina 94.3 0.037 8E-07 45.4 2.9 19 1-19 8-26 (184)
497 COG0410 LivF ABC-type branched 94.3 0.026 5.6E-07 47.9 2.0 19 1-19 35-53 (237)
498 KOG0466 Translation initiation 94.3 0.1 2.2E-06 46.1 5.7 125 44-213 126-253 (466)
499 COG2607 Predicted ATPase (AAA+ 94.3 0.18 3.9E-06 43.3 6.9 91 2-120 92-182 (287)
500 PRK13540 cytochrome c biogenes 94.3 0.026 5.7E-07 46.9 2.0 19 1-19 33-51 (200)
No 1
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=1.5e-62 Score=428.87 Aligned_cols=264 Identities=66% Similarity=1.091 Sum_probs=246.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|++|+||||++|+|+|++++.++.+.++|..+.......+|.++.||||||+.+....+++..+.++.++...++|++|
T Consensus 44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVL 123 (313)
T TIGR00991 44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLL 123 (313)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEE
Confidence 69999999999999999998888888777776666677789999999999999987766677777788777777999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF 160 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 160 (265)
||+++|..+++..|.++++.+++.||+++|+++|||+||+|..++++.++++|+.++++.++++|+++.+..+.+.+...
T Consensus 124 yV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~ 203 (313)
T TIGR00991 124 YVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFP 203 (313)
T ss_pred EEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhccccccccccc
Confidence 99999988899999999999999999999999999999999988899999999999999999999999988887788888
Q ss_pred chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecccccccCCCCCCCCccchhHHHHHHHHHHHh
Q 024586 161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240 (265)
Q Consensus 161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 240 (265)
+|++++||+++|.+|+.+|++||+++.|++.|+++|.+++.+.++++++|++++++++||.++|+|+||++++||||++|
T Consensus 204 ~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (313)
T TIGR00991 204 IPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVK 283 (313)
T ss_pred CCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhHhhcccchhhhhhcc
Q 024586 241 PLIRAIKSDAAKEAKPVWARASRR 264 (265)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ 264 (265)
||+++|++||++|++|+||.|+.-
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (313)
T TIGR00991 284 PIRRAIHADIANEKKDAWEQRDRG 307 (313)
T ss_pred HHHHHHHHHHhhccCcchhhhhhh
Confidence 999999999999999999999753
No 2
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=7.1e-46 Score=346.59 Aligned_cols=245 Identities=32% Similarity=0.511 Sum_probs=216.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d 77 (265)
+|+||+||||++|+|+|+.++.++...+.|+.+.......+|..+.||||||+.++... ++++++.+.+++...++|
T Consensus 124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpD 203 (763)
T TIGR00993 124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPD 203 (763)
T ss_pred ECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999998777776666666666666788999999999999987432 345666777777767899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC-----CCHHHHHhhchHHHHHHHhcccccc
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMK 152 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~~~~~~~ 152 (265)
+||||++++..+.+.++..+++.|++.||+++|+++||||||+|..++++ .++++|+.++.+.++++|++|++..
T Consensus 204 VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~~g~~ 283 (763)
T TIGR00993 204 IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDL 283 (763)
T ss_pred EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHhcCcc
Confidence 99999999865666678899999999999999999999999999987765 6899999999999999999998755
Q ss_pred ccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHH-HHhhCCCcceecccccccCCCCCCCCccchhHHH
Q 024586 153 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT-EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIF 231 (265)
Q Consensus 153 ~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 231 (265)
....+..++|++++||+++|.+|+.+|++||+++.|++.|+..|. ..+.+++.+++.+++++++++++.++++|+||++
T Consensus 284 ~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~plp~ 363 (763)
T TIGR00993 284 RLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAPPLPY 363 (763)
T ss_pred eecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCCchHH
Confidence 544456689999999999999999999999999999999999998 8899999999999999999999999999999999
Q ss_pred HHHHHHHHhHhHHH
Q 024586 232 AFQYFFIIKPLIRA 245 (265)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (265)
++||||++||--+.
T Consensus 364 ~ls~ll~~r~~~k~ 377 (763)
T TIGR00993 364 LLSWLLQSRAHPKL 377 (763)
T ss_pred HHHHHhhcCCCCCC
Confidence 99999999985444
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=1.4e-37 Score=268.01 Aligned_cols=208 Identities=49% Similarity=0.683 Sum_probs=173.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC---CCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~---~~~~~~~~~i~~~l~~~~~d 77 (265)
+|++|+|||||+|+|+|...+.++.+.++|..+..+...++|.++++|||||+.+.. ..++.+++.+.+++...++|
T Consensus 37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id 116 (249)
T cd01853 37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD 116 (249)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC
Confidence 699999999999999999988888888888888888888899999999999998873 23456777788888777899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhc-ccccccccc
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP-STWMKKKDI 156 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~ 156 (265)
++|||.++|..+++..|..+++.|.+.||+++|+++++|+||+|..++++.....+..++...+++.+.+ +..+.. ..
T Consensus 117 vIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 195 (249)
T cd01853 117 VVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GD 195 (249)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cC
Confidence 9999999998889999999999999999999999999999999999888876655554444444444433 333332 22
Q ss_pred ccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceec
Q 024586 157 QGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV 209 (265)
Q Consensus 157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~ 209 (265)
....+|+++++|++.|.+|+.||++||+++.|++.|+..|.........++++
T Consensus 196 ~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T cd01853 196 PRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANILL 248 (249)
T ss_pred ccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhcccccccc
Confidence 24569999999999999999999999999999999999999998877666554
No 4
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.97 E-value=5e-30 Score=216.68 Aligned_cols=176 Identities=30% Similarity=0.398 Sum_probs=137.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (265)
+|++|+||||++|+|+|.+.+..+. ..++|..+..+...++|+.++||||||+.++...+++..+.|.+++ +.+++|
T Consensus 6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~h 85 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPH 85 (212)
T ss_dssp ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ES
T ss_pred ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCe
Confidence 6999999999999999999876653 4567888999999999999999999999998887888888888876 568999
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhc-hHHHHHHHhccc-cc---c
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVSPST-WM---K 152 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~-~~---~ 152 (265)
+||||++++ +++..+...++.+.+.||+++|+++|||+|++|... +..+++|++.. +..+++++++|+ ++ +
T Consensus 86 a~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~ 161 (212)
T PF04548_consen 86 AFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGRYHVFN 161 (212)
T ss_dssp EEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred EEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence 999998887 899999999999999999999999999999998753 33499999854 467999999876 33 2
Q ss_pred cc-------ccc----cCCchhHhhhcCCcCCCCccccc
Q 024586 153 KK-------DIQ----GSFVPVVLVENSGRCAKNENDEK 180 (265)
Q Consensus 153 ~~-------~~~----~~~ip~~~~~n~~~~~~~~~~~~ 180 (265)
.. ..| +.+|+.++.+|+|.||+++++++
T Consensus 162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~ 200 (212)
T PF04548_consen 162 NKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEE 200 (212)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Confidence 22 112 46899999999999999887654
No 5
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.95 E-value=1.1e-26 Score=193.99 Aligned_cols=145 Identities=24% Similarity=0.327 Sum_probs=122.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (265)
+|++|+|||||+|+|+|.+.+..+. ..+.|..+..+...++|..+.||||||+.+.....+...+.+.+++ +.+++|
T Consensus 6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~ 85 (196)
T cd01852 6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPH 85 (196)
T ss_pred ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCE
Confidence 6999999999999999998765553 3467888888888899999999999999987655555556666654 347899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 149 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 149 (265)
++|||++++ +++..|..+++.+++.||+++|+++++|+||+|.. .+.++++|+......++++++.|+
T Consensus 86 ~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l--~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 86 AFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL--EGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred EEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc--CCCcHHHHHHhccHHHHHHHHHhC
Confidence 999998776 48999999999999999999999999999999875 334899999888889999999886
No 6
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=159.70 Aligned_cols=182 Identities=25% Similarity=0.358 Sum_probs=125.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|+||+|||||||+|++.+..+++....++.........+++..+++|||||++|+...+.++...+...+ ++.|++|
T Consensus 45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL 122 (296)
T COG3596 45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVL 122 (296)
T ss_pred ecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEE
Confidence 59999999999999998777777766656555555566678889999999999998888877777777766 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc----ccccccc
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST----WMKKKDI 156 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~----~~~~~~~ 156 (265)
++.+.++ |.-..|..++..+.-.... +++++|+|++|...+- .+|+.--...+.+++++++... ++...
T Consensus 123 ~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~-~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-- 195 (296)
T COG3596 123 WLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPG-REWDSAGHQPSPAIKQFIEEKAEALGRLFQE-- 195 (296)
T ss_pred EeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccc-cccccccCCCCHHHHHHHHHHHHHHHHHHhh--
Confidence 9988776 4334455666665544433 8999999999986442 2233222233445555553211 11000
Q ss_pred ccCCchhHhhhcCCcCCCCccccccCCCCCCC-hHHHHHHHHHHhhCCCcceecc
Q 024586 157 QGSFVPVVLVENSGRCAKNENDEKVLPNGTAW-IPNLVKTITEVVLNGSKALLVD 210 (265)
Q Consensus 157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~i~~~~~~~~~~~~~~ 210 (265)
--|++.++ ...+| +..|+..+++++|.+++...+.
T Consensus 196 ---V~pV~~~~----------------~r~~wgl~~l~~ali~~lp~e~rs~~a~ 231 (296)
T COG3596 196 ---VKPVVAVS----------------GRLPWGLKELVRALITALPVEARSPLAA 231 (296)
T ss_pred ---cCCeEEec----------------cccCccHHHHHHHHHHhCcccccchhhh
Confidence 12443222 22457 9999999999999999877665
No 7
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.83 E-value=4.6e-23 Score=185.11 Aligned_cols=229 Identities=19% Similarity=0.153 Sum_probs=141.0
Q ss_pred CCCCCCCHHHHHHHHhCCC-----cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (265)
+|.+|+|||||||+|.|-. .+.++.. .+|..+..|.. ..-.++++||.||++.+....+++++.+.- ..
T Consensus 41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~----~~ 114 (376)
T PF05049_consen 41 TGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF----YR 114 (376)
T ss_dssp EESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG----GG
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc----cc
Confidence 4999999999999998732 2333332 35555555443 333468999999999888777788876653 37
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC--CCCCCCCHHHHHhhchHHHHHHHhccccccc
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL--SLPDRLDYEVFCSKRSEALLKFVSPSTWMKK 153 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 153 (265)
+|+||++ .+.||+..|..+++.++++. +++++|.||+|. ...+......|.+ +.+.+-|++.+.-+-
T Consensus 115 yD~fiii---~s~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~Dl~~~~~~~p~~f~~---e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 115 YDFFIII---SSERFTENDVQLAKEIQRMG-----KKFYFVRTKVDSDLYNERRRKPRTFNE---EKLLQEIRENCLENL 183 (376)
T ss_dssp -SEEEEE---ESSS--HHHHHHHHHHHHTT------EEEEEE--HHHHHHHHHCC-STT--H---HTHHHHHHHHHHHHH
T ss_pred cCEEEEE---eCCCCchhhHHHHHHHHHcC-----CcEEEEEecccccHhhhhccCCcccCH---HHHHHHHHHHHHHHH
Confidence 8999888 44589999999999999986 999999999975 2111111111221 233333333221111
Q ss_pred cccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecc------cccccCCCCCCCCccch
Q 024586 154 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVD------KKLVEGPNPNEKGKILI 227 (265)
Q Consensus 154 ~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 227 (265)
+...+...+++++++. .+..+| ++.|.+++...++.++|+.++. ++.++.++.+.++++|+
T Consensus 184 ~k~gv~~P~VFLVS~~-----------dl~~yD--Fp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~ 250 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSF-----------DLSKYD--FPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWL 250 (376)
T ss_dssp HCTT-SS--EEEB-TT-----------TTTSTT--HHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcCceEEEeCC-----------CcccCC--hHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Confidence 1122345788888874 244556 9999999999999999988776 56788888889999997
Q ss_pred h-HHHHHHHHHHHhHhHHHH-HHhHhhcccchhhhhh
Q 024586 228 P-FIFAFQYFFIIKPLIRAI-KSDAAKEAKPVWARAS 262 (265)
Q Consensus 228 p-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (265)
- +.-++-.++ |+.+.+ ..|+....+.+..||.
T Consensus 251 ~Al~s~~~a~i---P~~g~~~~~D~~~L~~~l~~Yr~ 284 (376)
T PF05049_consen 251 EALKSAAVATI---PVPGLSSACDLEILEKCLNQYRS 284 (376)
T ss_dssp HHHHT--BSS----CCCSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC---CCcccccccCHHHHHHHHHHHHH
Confidence 4 444444455 888885 7799999999988885
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=145.64 Aligned_cols=118 Identities=21% Similarity=0.270 Sum_probs=95.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~i 79 (265)
||+++||||||+|+|+|++++.+|+.+.||+....+-.+.+..++.++||||+..+...- +.+.+.+...+ .++|++
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl--~dvDli 89 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL--KDVDLI 89 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh--ccCcEE
Confidence 699999999999999999999999999999999998888889999999999998774332 22222222222 589999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
|||++.+. .+...|..+++.+.+.. .|+++++||.|...++
T Consensus 90 lfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~~ 130 (298)
T COG1159 90 LFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKPK 130 (298)
T ss_pred EEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCcH
Confidence 99966653 38889999999998832 7999999999986443
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.77 E-value=2.1e-18 Score=138.09 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=88.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+++|||||+|+|+|.. ..+++++++|.+...+...+++..+.++||||+++......+ .+...+++....+|+++
T Consensus 6 vG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~~D~ii 83 (156)
T PF02421_consen 6 VGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEKPDLII 83 (156)
T ss_dssp EESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTSSSEEE
T ss_pred ECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcCCCEEE
Confidence 5999999999999999999 478999999999998899999999999999999875443321 13335566667899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+| +|+.++ +.+..++..+.+.. +|+++|+||+|.....+.
T Consensus 84 ~V--vDa~~l-~r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 84 VV--VDATNL-ERNLYLTLQLLELG-----IPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp EE--EEGGGH-HHHHHHHHHHHHTT-----SSEEEEEETHHHHHHTTE
T ss_pred EE--CCCCCH-HHHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcCC
Confidence 99 555454 34456666776654 999999999998655543
No 10
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=1.7e-17 Score=126.69 Aligned_cols=111 Identities=29% Similarity=0.448 Sum_probs=83.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|.+|+|||||+|+|++.+.+.++..+++|..+......+++..+.++||||+.++....... +.+..++ ....+|++
T Consensus 5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~~~d~i 83 (116)
T PF01926_consen 5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQISKSDLI 83 (116)
T ss_dssp EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHCTESEE
T ss_pred ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHHHCCEE
Confidence 599999999999999998777888888899888766778899999999999998765433211 1222222 12588999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
+||++.+. ..++.+.++++.+. . .+|+++|+||
T Consensus 84 i~vv~~~~-~~~~~~~~~~~~l~-~-----~~~~i~v~NK 116 (116)
T PF01926_consen 84 IYVVDASN-PITEDDKNILRELK-N-----KKPIILVLNK 116 (116)
T ss_dssp EEEEETTS-HSHHHHHHHHHHHH-T-----TSEEEEEEES
T ss_pred EEEEECCC-CCCHHHHHHHHHHh-c-----CCCEEEEEcC
Confidence 99987554 34566777878784 1 2899999998
No 11
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=2.7e-17 Score=137.40 Aligned_cols=175 Identities=18% Similarity=0.186 Sum_probs=105.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC----CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF----QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~----~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|+|||||+|+|+|......+.. ..+|.....+.. .....+.+|||||+.+.....+++++.+ ...++
T Consensus 7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~----~~~~~ 81 (197)
T cd04104 7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEM----KFSEY 81 (197)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHh----CccCc
Confidence 69999999999999999643211111 112222211111 1234789999999987655444444332 22478
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC-------CHHHHHhhchHHHHHHHhccc
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL-------DYEVFCSKRSEALLKFVSPST 149 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~-------~~~~~~~~~~~~l~~~i~~~~ 149 (265)
|++++| .+ .+++..+..+++.+.+.. +++++|+||+|+..+... ..+++++...+.+.+.+...
T Consensus 82 d~~l~v--~~-~~~~~~d~~~~~~l~~~~-----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~- 152 (197)
T cd04104 82 DFFIII--SS-TRFSSNDVKLAKAIQCMG-----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA- 152 (197)
T ss_pred CEEEEE--eC-CCCCHHHHHHHHHHHHhC-----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-
Confidence 999998 33 368999999999998863 789999999998533221 12222222222222222211
Q ss_pred cccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceec
Q 024586 150 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV 209 (265)
Q Consensus 150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~ 209 (265)
.....+++++++.. ...++ ++.|.+.|+..++.++|+.+.
T Consensus 153 -------~~~~p~v~~vS~~~-----------~~~~~--~~~l~~~~~~~l~~~~~~~~~ 192 (197)
T cd04104 153 -------GVSEPPVFLVSNFD-----------PSDYD--FPKLRETLLKDLPAHKRHVFL 192 (197)
T ss_pred -------CCCCCCEEEEeCCC-----------hhhcC--hHHHHHHHHHHhhHHHHHHHH
Confidence 11234666666531 00122 999999999999998887653
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=149.45 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=92.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH--HhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF--LLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~--l~~~~~d~ 78 (265)
||+++||||||+|+|+|++.+.+++++++|++......++.++.+.+|||+|+.+... +...+.++.. ....++|+
T Consensus 9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai~eADv 86 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAIEEADV 86 (444)
T ss_pred ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999999999999999999999999999999999999999975431 1222222221 12258999
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|||++... .+++.|..+.+.|.+.- +|+++|.||+|..
T Consensus 87 ilfvVD~~~-Git~~D~~ia~~Lr~~~-----kpviLvvNK~D~~ 125 (444)
T COG1160 87 ILFVVDGRE-GITPADEEIAKILRRSK-----KPVILVVNKIDNL 125 (444)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEcccCc
Confidence 999954332 38999999999998543 9999999999974
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.69 E-value=5.8e-16 Score=135.50 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=81.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|.+.+.+++.+++|..........++.++.++||||+.+.... .+...+....++ ..+|++
T Consensus 6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvv 83 (270)
T TIGR00436 6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLI 83 (270)
T ss_pred ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEE
Confidence 69999999999999999998788888888887666555566778999999999765321 111222222222 488999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+. ....+..+++.+... ..|+++|+||+|+.
T Consensus 84 l~VvD~~~--~~~~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 84 LFVVDSDQ--WNGDGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred EEEEECCC--CCchHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 99976653 222334555655543 27999999999985
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=4.4e-16 Score=123.82 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=82.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ...........++ ..+|++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d~i 80 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEADVI 80 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCCEE
Confidence 6999999999999999987656666667777777777778889999999999976432 1111222222222 478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++... ..+..+..+.+.+.+.. .|+++|+||+|+.
T Consensus 81 i~v~d~~~-~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~ 118 (157)
T cd01894 81 LFVVDGRE-GLTPADEEIAKYLRKSK-----KPVILVVNKVDNI 118 (157)
T ss_pred EEEEeccc-cCCccHHHHHHHHHhcC-----CCEEEEEECcccC
Confidence 99976543 34455556666665542 8999999999985
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=144.84 Aligned_cols=126 Identities=26% Similarity=0.372 Sum_probs=99.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (265)
||++++|||||+|+|+|++...+++.+++|.++.....+++|+++.+|||.|+-.-....+ +.++.++..-....+|+
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~v 263 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADV 263 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCE
Confidence 6999999999999999999999999999999999999999999999999999976443332 22222222222247899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 133 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~ 133 (265)
+++|+ |+.. ++++|..++..+.+.. +.+++|+||+|+...+....+++
T Consensus 264 vllvi--Da~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~ 312 (444)
T COG1160 264 VLLVI--DATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEF 312 (444)
T ss_pred EEEEE--ECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHH
Confidence 99994 5444 8999999999998876 89999999999975444444444
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=2.8e-15 Score=132.56 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|.+.+.+++.+.+|..........++.++.++||||+.+......+ ........ ...+|++
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~--~~~~D~i 88 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS--LKDVDLV 88 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--HhcCCEE
Confidence 69999999999999999998777877777666554444446679999999999765422111 11122222 2478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+. .++..+..+++.+... ..|+++|+||+|+.
T Consensus 89 l~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~ 126 (292)
T PRK00089 89 LFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV 126 (292)
T ss_pred EEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence 99977664 4667777777766632 27999999999985
No 17
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=5e-16 Score=141.28 Aligned_cols=116 Identities=24% Similarity=0.318 Sum_probs=89.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|+++||||||+|+|++++.+.|++.++||++.......++|.++.++||.|+.++...-+.. -|.+.. ....+|.+
T Consensus 223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i--GIeRs~~~i~~ADlv 300 (454)
T COG0486 223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI--GIERAKKAIEEADLV 300 (454)
T ss_pred ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH--HHHHHHHHHHhCCEE
Confidence 699999999999999999999999999999999999999999999999999998765432211 112221 22488999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
|||++.+. ..+..|...+..+.. .+++++|.||+|+...
T Consensus 301 L~v~D~~~-~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 301 LFVLDASQ-PLDKEDLALIELLPK------KKPIIVVLNKADLVSK 339 (454)
T ss_pred EEEEeCCC-CCchhhHHHHHhccc------CCCEEEEEechhcccc
Confidence 99954442 156777777762211 2899999999999643
No 18
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=7.5e-15 Score=132.40 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=82.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|.....+++...+|..........++.++.+|||||+.+.... .....+..... ..++|++
T Consensus 58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~--l~~aDvi 135 (339)
T PRK15494 58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS--LHSADLV 135 (339)
T ss_pred EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH--hhhCCEE
Confidence 69999999999999999987667776677776666677788899999999999653221 22222222112 2488999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|+|++... .++..+..+++.+.... .+.++|+||+|+.
T Consensus 136 l~VvD~~~-s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~ 173 (339)
T PRK15494 136 LLIIDSLK-SFDDITHNILDKLRSLN-----IVPIFLLNKIDIE 173 (339)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCc
Confidence 99965432 36777777777766532 5778999999984
No 19
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.64 E-value=4.8e-15 Score=118.16 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=79.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|++.|.. +.++..+++|........++++..+.+|||||+.+......+ ......++...++|+++
T Consensus 2 ~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 2 VGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED-EKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-HHHHHHHhcCCCCcEEE
Confidence 6999999999999999986 356666777777777777788899999999999765432211 11123333336899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++... . .....++..+.+. .+|+++|+||+|+.+
T Consensus 80 ~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 80 NVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEAE 115 (158)
T ss_pred EEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence 9966553 2 2233444444432 289999999999853
No 20
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=7.4e-15 Score=138.10 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=87.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.+...++..+++|..+......++|..+.+|||||+...... ..+....++.......+|+
T Consensus 217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~ 296 (472)
T PRK03003 217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEV 296 (472)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCE
Confidence 69999999999999999986667778888888877778889999999999998543221 1233333332222258899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++.+. +.+..+..++..+... .+|+++|+||+|+.
T Consensus 297 vilV~Da~~-~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~ 335 (472)
T PRK03003 297 AVVLIDASE-PISEQDQRVLSMVIEA-----GRALVLAFNKWDLV 335 (472)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 999977664 4677777777666543 28999999999995
No 21
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.64 E-value=5.6e-15 Score=129.55 Aligned_cols=116 Identities=18% Similarity=0.302 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCC--ccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGP--RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 69 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~--~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~ 69 (265)
+|.+|+|||||+|+|++......+.. ...|. .........+|. +++||||||+++... +....+.|..
T Consensus 10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~~~~i~~ 88 (276)
T cd01850 10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDCWKPIVD 88 (276)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhhHHHHHH
Confidence 69999999999999999876443321 11222 222234445664 689999999987532 2222222221
Q ss_pred --------H------------HhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 70 --------F------------LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 70 --------~------------l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+ .....+|++||+++.....+...|.++++.+.+. .|+++|+||+|+.
T Consensus 89 yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 89 YIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 1 1123689999997665545788888888888752 7999999999985
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.63 E-value=4.2e-15 Score=120.16 Aligned_cols=117 Identities=22% Similarity=0.207 Sum_probs=78.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (265)
||.+|||||||+|+|.+... .++..+++|..+........+. .+.++||||+.+..... ..++..+ ..
T Consensus 6 vG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~------~~ 78 (170)
T cd01898 6 VGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI------ER 78 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH------Hh
Confidence 69999999999999998764 4555555666666666666776 89999999986432221 1222222 26
Q ss_pred ccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 76 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 76 ~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++++|++++.. ........+.+.+.+.......+|+++|+||+|+.+
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 7999999776643 112233455666655432222488999999999853
No 23
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.62 E-value=2.2e-15 Score=122.25 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=76.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~~~~ 75 (265)
+|++|||||||+|+|.+... .++..+++|..+......++ +.++.+|||||+.+.....+ .+...+ .+
T Consensus 2 iG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~------~~ 74 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI------RR 74 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH------hc
Confidence 69999999999999999875 55666667777766667777 89999999999865322211 222222 37
Q ss_pred ccEEEEEEecCCcC-----CCH-HHHHHHHHHHHhcCc-----CcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYR-----VDN-LDKQITRAITDNFGE-----QIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r-----~~~-~d~~~l~~l~~~~g~-----~~~~~~ivV~tk~D~~ 123 (265)
+|++++|++.+... ... ....+...+...... ...+|+++|+||+|+.
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 89999997665421 111 122233333322211 1238999999999985
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=1.9e-14 Score=131.69 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=84.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (265)
||.+|||||||+|+|++.+. .+++++.+|..+........+ .++.++||||+.+..... ..+++.+ ..
T Consensus 165 VG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i------~r 237 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL------ER 237 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH------Hh
Confidence 69999999999999999886 788889999999988887764 579999999998754332 2233333 37
Q ss_pred ccEEEEEEecCC---cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~---~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++|+++.. .........+++.+......-..+|.++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 799999976541 122233455666665542211238999999999984
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=1.5e-14 Score=129.97 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=83.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (265)
||.++||||||+|+|.+.+. .+++++.+|..+......+ ++.++.++||||+.+..... ..+++.+. .
T Consensus 164 VG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie------~ 236 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE------R 236 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh------h
Confidence 69999999999999999775 5788888999998888877 56789999999998754433 23333333 6
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++|++++.....+....+.+.+......-..+|+++|+||+|+.
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 799999977664221122234555555432211248999999999985
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=1.7e-14 Score=133.98 Aligned_cols=117 Identities=26% Similarity=0.353 Sum_probs=87.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|+|.+...++..+++|..+.......++..+.+|||||+.+.....+ +.....+..-....+|+
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999988666777788888877777788899999999999976543321 11111111112247899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++... .++..+..++..+.+.. +++++|+||+|+.
T Consensus 258 ~ilV~D~~~-~~~~~~~~~~~~~~~~~-----~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 258 VLLVLDATE-GITEQDLRIAGLILEAG-----KALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCC-CccHHHHHHHHHHHHcC-----CcEEEEEECcccC
Confidence 999977664 47777877777766542 8999999999985
No 27
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=1.1e-14 Score=117.57 Aligned_cols=117 Identities=22% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH--HHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI--QLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~--~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .++..+.+|...........+.++.+|||||+.+.....+..+ ..+. .+ ....|+
T Consensus 6 ~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~~~~d~ 82 (168)
T cd01897 6 AGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-AHLRAA 82 (168)
T ss_pred EcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-HhccCc
Confidence 69999999999999999874 3444445566555555666788999999999865332221111 1111 11 123589
Q ss_pred EEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++..... +. .....+++.+.+.+. ..|+++|+||+|+.
T Consensus 83 ~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~ 126 (168)
T cd01897 83 VLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLL 126 (168)
T ss_pred EEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccC
Confidence 99997665422 22 333456677766542 28999999999985
No 28
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.61 E-value=1.3e-14 Score=119.03 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=77.9
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhc-CC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLN-KT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~-~~ 75 (265)
+|.+|+|||||+|+|++.. ...++...++|..+..+.. + ..+.+|||||++...... .++...+..++.. ..
T Consensus 24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (179)
T TIGR03598 24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKREN 100 (179)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChh
Confidence 6999999999999999985 4455555556655443332 2 378999999987653322 2233333444432 35
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++|++.+. +++..+.++++.+... .+|+++|+||+|+.
T Consensus 101 ~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~ 142 (179)
T TIGR03598 101 LKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL 142 (179)
T ss_pred hcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 789999976553 4777777777766543 28999999999984
No 29
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.61 E-value=1.7e-14 Score=116.20 Aligned_cols=118 Identities=26% Similarity=0.345 Sum_probs=79.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++......+..+++|..........++..+.+|||||+.+...... +.............+|+
T Consensus 8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~ 87 (174)
T cd01895 8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADV 87 (174)
T ss_pred EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCe
Confidence 6999999999999999987655666666666666666777888999999999976532111 11111111112247899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++.+. ..+..+..+++.+... ..|+++|+||+|+.+
T Consensus 88 vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 88 VLLVIDATE-GITEQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred EEEEEeCCC-CcchhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 999976553 2444444555544332 279999999999864
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=1e-14 Score=135.53 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=88.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|++...+.+++.+++|.........++|..+.+|||||+...... .+...+....++ ..+|++
T Consensus 5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ad~v 82 (429)
T TIGR03594 5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EEADVI 82 (429)
T ss_pred ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hhCCEE
Confidence 69999999999999999987778888888888888888899999999999998543211 122222222222 478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++... .++..+..+.+.+.+.. +|+++|+||+|+..
T Consensus 83 l~vvD~~~-~~~~~d~~i~~~l~~~~-----~piilVvNK~D~~~ 121 (429)
T TIGR03594 83 LFVVDGRE-GLTPEDEEIAKWLRKSG-----KPVILVANKIDGKK 121 (429)
T ss_pred EEEEeCCC-CCCHHHHHHHHHHHHhC-----CCEEEEEECccCCc
Confidence 99966543 47788888888887642 89999999999853
No 31
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.60 E-value=2.6e-14 Score=113.45 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=79.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|++...+..+..+++|...........+.++.+|||||+.+..... .........+ ...+|++
T Consensus 7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~ 84 (157)
T cd04164 7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREA--IEEADLV 84 (157)
T ss_pred ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHH--HhhCCEE
Confidence 699999999999999998866666666777776666677788899999999997654221 1111111222 2478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++++. ..+..+.+.+.. . ..+|+++|+||+|+.+
T Consensus 85 v~v~d~~~-~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 85 LFVIDASR-GLDEEDLEILEL---P----ADKPIIVVLNKSDLLP 121 (157)
T ss_pred EEEEECCC-CCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence 99977764 344444444433 1 2289999999999853
No 32
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1e-14 Score=119.66 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=84.7
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhcC-C
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLNK-T 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~~-~ 75 (265)
+|+|+|||||+||+|+|.. .+.+|..++.|.....+. +++. +.++|.||++=..... +++-..+.+++..+ .
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~ 106 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN 106 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence 5999999999999999965 679999888887655433 3332 7899999997543322 34555566666443 4
Q ss_pred ccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 76 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 76 ~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
..+++++ +|..+ ....|.++++.+.+.. .|+++|+||+|..+
T Consensus 107 L~~vvll--iD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~ 149 (200)
T COG0218 107 LKGVVLL--IDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLK 149 (200)
T ss_pred heEEEEE--EECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCC
Confidence 5666666 45545 7778999999998875 89999999999864
No 33
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.60 E-value=2e-14 Score=114.64 Aligned_cols=115 Identities=21% Similarity=0.249 Sum_probs=79.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~-~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|+|...+..+....++...........+..+.+|||||+.+......+.+. .... ....+|++
T Consensus 9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~d~i 86 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS--ALKDVDLV 86 (168)
T ss_pred ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH--HHHhCCEE
Confidence 69999999999999999987655555445544444444556678999999999765433222211 1111 22578999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.... +...+..+++.+... ..|+++|+||+|+.
T Consensus 87 ~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 87 LFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred EEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 999766642 455666666666654 27899999999985
No 34
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=2.9e-14 Score=132.77 Aligned_cols=117 Identities=25% Similarity=0.346 Sum_probs=87.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|+|.+...++..+++|..........++..+.++||||+.......+ +.....+..-....+|+
T Consensus 179 vG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 258 (435)
T PRK00093 179 IGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADV 258 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCE
Confidence 6999999999999999998777788888888777677778899999999999976543332 11111111112247899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++... .++..+..++..+.+.. +++++|+||+|+.
T Consensus 259 ~ilViD~~~-~~~~~~~~i~~~~~~~~-----~~~ivv~NK~Dl~ 297 (435)
T PRK00093 259 VLLVIDATE-GITEQDLRIAGLALEAG-----RALVIVVNKWDLV 297 (435)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHcC-----CcEEEEEECccCC
Confidence 999977654 47778887777766542 8999999999985
No 35
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.58 E-value=4.4e-14 Score=126.76 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=82.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (265)
||.++||||||+|+|.+... .+++++.+|..+......+.+ .++.++||||+.+..... ..+++.+. .
T Consensus 163 vG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie------r 235 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE------R 235 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH------h
Confidence 69999999999999999764 577778888888888888877 899999999997654332 23344443 6
Q ss_pred ccEEEEEEecCCc---CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~---r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++|+|++++.. ...+....+.+.+......-..+|+++|+||+|+.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 7999999776642 11122233445554432211248999999999984
No 36
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=125.64 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=88.7
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH-----HHHHHHHHHHhcCCc
Q 024586 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-----HAIQLIKRFLLNKTI 76 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~-----~~~~~i~~~l~~~~~ 76 (265)
|.++||||||++++.+.++ .+.+++.||.....++.+.++.++.+|||||+.|-...+. ++.-.++ .=.
T Consensus 175 G~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~-----hl~ 248 (346)
T COG1084 175 GYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR-----HLA 248 (346)
T ss_pred cCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH-----Hhc
Confidence 8999999999999999987 8889999999999999999999999999999988543322 1111222 234
Q ss_pred cEEEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|||+++.+.+. ++ +....+++.+...|. .|+++|+||+|..
T Consensus 249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~ 293 (346)
T COG1084 249 GVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA 293 (346)
T ss_pred CeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence 8999997776544 44 344578899998884 6899999999985
No 37
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=5.5e-14 Score=138.19 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=87.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.+...++..+++|.........++|..+.+|||||+....... .+....++.......+|+
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv 535 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL 535 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence 699999999999999999866677788888888777778899999999999986432221 223333322212257899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++.+. ..+..+..++..+.+.. +|+++|+||+|+.
T Consensus 536 vilViDat~-~~s~~~~~i~~~~~~~~-----~piIiV~NK~DL~ 574 (712)
T PRK09518 536 ALFLFDASQ-PISEQDLKVMSMAVDAG-----RALVLVFNKWDLM 574 (712)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEEchhcC
Confidence 999977654 46777777777665432 8999999999995
No 38
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=4.4e-14 Score=131.60 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=86.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d~ 78 (265)
+|.+|||||||+|+|+|...+.++..+++|.........++|..+.+|||||+.+... ...+.+.... ...++|+
T Consensus 7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~~~ad~ 83 (435)
T PRK00093 7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAELAIEEADV 83 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999998777777888888888788889999999999999976221 1222222111 1247899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 84 il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 84 ILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 999976653 4677777777777764 28999999999974
No 39
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.56 E-value=4.2e-14 Score=127.97 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (265)
+|.+|+|||||+|+|+|.+. .+.+..++|..+......+ +|.++.++||||+... .+....+.++..+ ....+|+
T Consensus 195 vG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tle~~~~ADl 271 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATLEEVREADL 271 (351)
T ss_pred ECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHHHHHHhCCE
Confidence 69999999999999999873 5666667788887777777 6789999999998432 1122222232222 1247899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++.+..........+.+.+......+ +|+++|+||+|+.
T Consensus 272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~--~piIlV~NK~Dl~ 314 (351)
T TIGR03156 272 LLHVVDASDPDREEQIEAVEKVLEELGAED--IPQLLVYNKIDLL 314 (351)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhccCC--CCEEEEEEeecCC
Confidence 999977654222222222334444432122 7999999999985
No 40
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.56 E-value=8.6e-14 Score=109.63 Aligned_cols=116 Identities=26% Similarity=0.404 Sum_probs=76.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+||||++|+|++......+...++|........... +..+.++||||+.+...........+..++ ..+|++
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~i 79 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLI 79 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEE
Confidence 69999999999999999876545555556665555555544 678999999999876554432222222222 378999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++.... .......+....... ..|+++|+||+|+..
T Consensus 80 l~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~~ 118 (163)
T cd00880 80 LFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccCC
Confidence 999766542 222232222222222 289999999999853
No 41
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=5.6e-14 Score=132.14 Aligned_cols=115 Identities=21% Similarity=0.300 Sum_probs=84.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i 79 (265)
||.+|||||||+|+|++...+.++..+++|.........+++..+.+|||||+..... ..+.+......++ ..+|++
T Consensus 44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i 121 (472)
T PRK03003 44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM--RTADAV 121 (472)
T ss_pred EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence 6999999999999999987666777777777777777788899999999999853211 1112222222222 478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|+|++.+. +.+..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 122 l~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 122 LFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 99987764 3566677777777653 28999999999984
No 42
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.54 E-value=5.5e-14 Score=130.75 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|.+|||||||+|+|++...+.++..+++|.........++|.++.+|||||+.+....-+.. .+.+.. ....+|++
T Consensus 209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~--gi~~~~~~~~~aD~i 286 (442)
T TIGR00450 209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERL--GIEKSFKAIKQADLV 286 (442)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHH--HHHHHHHHHhhCCEE
Confidence 699999999999999998877788888888887777888899999999999996543211111 111111 12478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+. ..+..+. ++..+... .+|+++|+||+|+.
T Consensus 287 l~V~D~s~-~~s~~~~-~l~~~~~~-----~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 287 IYVLDASQ-PLTKDDF-LIIDLNKS-----KKPFILVLNKIDLK 323 (442)
T ss_pred EEEEECCC-CCChhHH-HHHHHhhC-----CCCEEEEEECccCC
Confidence 99977654 3333333 44444321 27999999999984
No 43
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.53 E-value=1.3e-13 Score=115.33 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .+.....+|..+......+.+. .+.+|||||+.+... ....+.....+ ....+|+
T Consensus 47 iG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~d~ 123 (204)
T cd01878 47 VGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLEEVAEADL 123 (204)
T ss_pred ECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHHHHhcCCe
Confidence 69999999999999999864 3333333445555555555554 899999999865321 12222221111 1247899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++.+..........+.+.+......+ +|+++|+||+|+.
T Consensus 124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~ 166 (204)
T cd01878 124 LLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLL 166 (204)
T ss_pred EEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccC
Confidence 999977664322222334445555443222 7999999999985
No 44
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=9.3e-14 Score=128.09 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=83.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~ 75 (265)
||.++||||||+|+|++.+. .+++++.+|..+......+. +.++.++||||+.+..... ..++..+ ..
T Consensus 164 VG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi------er 236 (424)
T PRK12297 164 VGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI------ER 236 (424)
T ss_pred EcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH------hh
Confidence 69999999999999999875 56778888888888777776 7899999999998654332 2233333 36
Q ss_pred ccEEEEEEecCCc--C-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 76 IDVLLYVDRLDVY--R-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 76 ~d~iL~V~~~d~~--r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
+|++++|+++++. + ..+....+.+.|......-..+|.++|+||+|+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 7999999877542 1 222334555666554322234899999999998
No 45
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.52 E-value=1e-13 Score=129.37 Aligned_cols=113 Identities=25% Similarity=0.287 Sum_probs=79.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|.+|+|||||+|+|++.+.+.+++.+++|.........++|.++.++||||+.++...-+.. .+++.+ ....+|++
T Consensus 221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~--gi~~~~~~~~~aD~i 298 (449)
T PRK05291 221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI--GIERSREAIEEADLV 298 (449)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH--HHHHHHHHHHhCCEE
Confidence 699999999999999999876778888888888777888899999999999996532211110 111111 12478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+. ..+..+...+.. . ..+|+++|+||+|+.
T Consensus 299 l~VvD~s~-~~s~~~~~~l~~-----~--~~~piiiV~NK~DL~ 334 (449)
T PRK05291 299 LLVLDASE-PLTEEDDEILEE-----L--KDKPVIVVLNKADLT 334 (449)
T ss_pred EEEecCCC-CCChhHHHHHHh-----c--CCCCcEEEEEhhhcc
Confidence 99976654 233334433332 1 127999999999995
No 46
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.51 E-value=1.1e-12 Score=109.64 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCCe--EEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAGF--TLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g~--~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||+|.+++.+. ...+.+++. ........++|. .+.+|||||..+... ..+++...... ....+
T Consensus 6 vG~~~vGKTsLi~~~~~~~f--~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~--~~~~a 81 (198)
T cd04142 6 LGAPGVGKTAIVRQFLAQEF--PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFR--GLRNS 81 (198)
T ss_pred ECCCCCcHHHHHHHHHcCCC--CcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHh--hhccC
Confidence 69999999999999998763 222233332 223334456674 578999999864321 12222221111 12478
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcC-cCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g-~~~~~~~ivV~tk~D~~ 123 (265)
|++++|+++++....+....+.+.+.+... .....|+++|+||+|+.
T Consensus 82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 999999887653211222345555555431 11237999999999995
No 47
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.51 E-value=6.2e-13 Score=106.43 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=72.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++.+.. .+..+..+.+.......+++ ..+.+|||||.. .....+..++ ..+|+
T Consensus 6 iG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-------~~~~~~~~~~--~~~~~ 75 (161)
T cd01861 6 LGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE-------RFRSLIPSYI--RDSSV 75 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHh--ccCCE
Confidence 699999999999999998752 22223333344444455555 357999999952 2222233333 47899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +.. ...++..+....+. ..|+++|+||+|+.
T Consensus 76 ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iilv~nK~D~~ 118 (161)
T cd01861 76 AVVVYDITNRQSFDN-TDKWIDDVRDERGN--DVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECcCHHHHHH-HHHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence 99998887533 333 33566666554443 37999999999985
No 48
>PRK11058 GTPase HflX; Provisional
Probab=99.50 E-value=3e-13 Score=125.19 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (265)
+|.+|||||||+|+|++.+.+ +++.+++|.++......+.+. ++.++||||+... .+....+.+...+ ....+|+
T Consensus 203 VG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~~~ADl 279 (426)
T PRK11058 203 VGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQETRQATL 279 (426)
T ss_pred ECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHhhcCCE
Confidence 699999999999999998864 566667787777766766664 8899999998432 1222222232222 2258999
Q ss_pred EEEEEecCCcCCCHHHHH-HHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQ-ITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~-~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++.+... ...+.. +.+.+...... ..|+++|+||+|+.
T Consensus 280 IL~VvDaS~~~-~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~ 322 (426)
T PRK11058 280 LLHVVDAADVR-VQENIEAVNTVLEEIDAH--EIPTLLVMNKIDML 322 (426)
T ss_pred EEEEEeCCCcc-HHHHHHHHHHHHHHhccC--CCCEEEEEEcccCC
Confidence 99997765422 222222 23334433222 27999999999985
No 49
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.49 E-value=3e-13 Score=128.04 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=93.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+||||++|+|+|.+. .++++++.|.+-........|..+.++|+||.++-.. +.++ +..++++....+|++
T Consensus 9 vGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~ll~~~~D~i 85 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFLLEGKPDLI 85 (653)
T ss_pred ecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHHhcCCCCEE
Confidence 69999999999999999987 8999999999999999999999999999999987543 2232 234667777899999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 131 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~ 131 (265)
+-| +|+..+..+-.-.++ +.+.. .|+++++|..|.+...+..++
T Consensus 86 vnV--vDAtnLeRnLyltlQ-LlE~g-----~p~ilaLNm~D~A~~~Gi~ID 129 (653)
T COG0370 86 VNV--VDATNLERNLYLTLQ-LLELG-----IPMILALNMIDEAKKRGIRID 129 (653)
T ss_pred EEE--cccchHHHHHHHHHH-HHHcC-----CCeEEEeccHhhHHhcCCccc
Confidence 999 676554444333333 33332 899999999999766665443
No 50
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=4.2e-13 Score=125.46 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=81.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~~~~~ 76 (265)
||.+|||||||+|+|.+.+. .+++++.+|..+......+.+.++.++||||+.+...... +++..+ ..+
T Consensus 165 VG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi------era 237 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI------ERC 237 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH------Hhc
Confidence 69999999999999999875 5678888999998888888899999999999976543221 233333 367
Q ss_pred cEEEEEEecCCc---CCCHHHH-HHHHHHHHhcC---------cCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVY---RVDNLDK-QITRAITDNFG---------EQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~---r~~~~d~-~~l~~l~~~~g---------~~~~~~~ivV~tk~D~~ 123 (265)
|++++|++++.. +-...+. .+.+.|..... .-..+|+++|+||+|+.
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 999999766421 1111122 23334443321 11248999999999984
No 51
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.49 E-value=3.7e-13 Score=107.74 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--CCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~--~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|+|.|........ ..++|.........+. +..+.+|||||.. .....+..+ ..++|
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-------~~~~~~~~~--~~~ad 76 (164)
T cd04171 6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-------KFIKNMLAG--AGGID 76 (164)
T ss_pred EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-------HHHHHHHhh--hhcCC
Confidence 5999999999999999864222211 1223433333444555 7889999999973 222222222 24789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++.+.. ........+..+.. .+. +|+++|+||+|+.
T Consensus 77 ~ii~V~d~~~~-~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 77 LVLLVVAADEG-IMPQTREHLEILEL-LGI---KRGLVVLTKADLV 117 (164)
T ss_pred EEEEEEECCCC-ccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence 99999877642 22333344443332 221 5899999999984
No 52
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=3.5e-13 Score=132.56 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=87.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|...+.++..+++|........++++..+.+|||||+..... ....+.+....++ ..+|++
T Consensus 281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i 358 (712)
T PRK09518 281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--SLADAV 358 (712)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--HhCCEE
Confidence 6999999999999999988777788888888777777788899999999999864221 1122222222222 488999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|+|++... .++..+..+.+.+.+. .+|+++|+||+|+.
T Consensus 359 L~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 359 VFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 99976543 4777787788877653 28999999999984
No 53
>PRK04213 GTP-binding protein; Provisional
Probab=99.48 E-value=1.5e-12 Score=108.61 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHh--cC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLL--NK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~--~~ 74 (265)
+|.+|||||||+|+|.|... .++..+++|..+.. ..++ .+.+|||||++......+ .+...+..++. ..
T Consensus 15 ~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T PRK04213 15 VGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD 89 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence 69999999999999999873 45555555544332 2222 689999999865433222 22222222332 24
Q ss_pred CccEEEEEEecCCcC-C---------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYR-V---------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r-~---------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++++++|++.+... + ...+..+++.+... ..|+++|+||+|+.
T Consensus 90 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 90 RILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI 143 (201)
T ss_pred hheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence 678889886554310 1 11234445444432 28999999999984
No 54
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.47 E-value=9.4e-13 Score=109.08 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|.+... ...+.+++..........++. .+.+|||||..... .....++ .++|+
T Consensus 5 vG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~ad~ 73 (190)
T cd04144 5 LGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------ALRDQWI--REGEG 73 (190)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHH--HhCCE
Confidence 69999999999999997653 222333333333333445555 47899999963221 1111122 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++....+.-..+++.+...... ....|+++|+||+|+..
T Consensus 74 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 74 FILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 99998887532222234566666655431 12379999999999853
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.47 E-value=2.7e-12 Score=102.84 Aligned_cols=112 Identities=18% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++... .....+..+.+........++ ..+.+|||||.. ........++ ..+|+
T Consensus 6 ~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~~~~~--~~~d~ 75 (164)
T smart00175 6 IGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE-------RFRSITSSYY--RGAVG 75 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH-------HHHHHHHHHh--CCCCE
Confidence 69999999999999998864 222112222222333455556 467899999952 1112222232 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++....-.+.-..++..+.....+ ..|+++|+||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~ 119 (164)
T smart00175 76 ALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLED 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhccc
Confidence 99997776422111122355555554433 389999999999854
No 56
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.47 E-value=1.1e-12 Score=107.36 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.+|+|||||+|+|++........ ..+.|...........+..+.+|||||..+. ..
T Consensus 5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-------~~ 77 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-------SS 77 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-------HH
Confidence 5999999999999999876432110 1122333333445566788999999997432 11
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
....++ ..+|++++|++... .....+...+..+... ..|+++|+||+|+..
T Consensus 78 ~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~ 128 (189)
T cd00881 78 EVIRGL--SVSDGAILVVDANE-GVQPQTREHLRIAREG-----GLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcc
Confidence 222222 37899999976553 2445555666655542 289999999999963
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.47 E-value=1.7e-12 Score=104.36 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++.+... .....+++..........++ ..+.+|||||..+... ....++ ..+|+
T Consensus 6 ~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~--~~~~~ 74 (164)
T smart00173 6 LGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA-------MRDQYM--RTGEG 74 (164)
T ss_pred ECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH-------HHHHHH--hhCCE
Confidence 69999999999999998763 22233333333334444555 4678999999754321 112222 36799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++......-..+.+.+.+.... ...|+++|.||+|+.+
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 99998777522111223344445444322 1379999999999853
No 58
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.47 E-value=5.4e-13 Score=111.65 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=79.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC--C----CCCCc--cEEEEeeeCCe--EEEEEeCCCCCCCCCC---c-------
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF--Q----SEGPR--PVMVSRSRAGF--TLNIVDTPGLIEGGYV---N------- 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~--~----~~t~~--~~~~~~~~~g~--~v~iiDTPG~~~~~~~---~------- 60 (265)
||.+|.||||++|+|+...+...+.. . +.|.+ ...+..+.+|. ++++||||||+|.-.. .
T Consensus 52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyI 131 (336)
T KOG1547|consen 52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYI 131 (336)
T ss_pred EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHH
Confidence 69999999999999998754332211 1 11221 12233444565 5699999999974211 1
Q ss_pred -HHHHHHHHHHH--------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 61 -YHAIQLIKRFL--------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 61 -~~~~~~i~~~l--------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++-+.+++.+ .+..+|++||.++..+..+...|.++++.|.+. .+++-|+.|+|..
T Consensus 132 neQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtl 197 (336)
T KOG1547|consen 132 NEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeecccc
Confidence 12222222222 234689999999998878999999999999998 7899999999974
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.46 E-value=6.5e-13 Score=107.25 Aligned_cols=113 Identities=20% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++... . ....++........... ....+.+|||||...... .. ..++ ..+|+
T Consensus 7 vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~--~~~~~ 75 (165)
T cd04140 7 FGAGGVGKSSLVLRFVKGTF-R-ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA----MQ---RLSI--SKGHA 75 (165)
T ss_pred ECCCCCCHHHHHHHHHhCCC-C-CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH----HH---HHHh--hcCCE
Confidence 69999999999999998763 1 22222222222222222 345678999999853221 11 1111 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~~ 124 (265)
+++|++++..........+++.+.+..+.. ...|+++|+||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 999988876432233455666676655432 3479999999999854
No 60
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.7e-13 Score=122.74 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=88.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|+++||||||+|+|..++...+++.+++|++.....++++|+++.++||.|+.+.....-+.+...+..-....+|+++
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~ 353 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL 353 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence 69999999999999999999999999999999999999999999999999999872221112222222222335889999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhc---Cc----CcCCcEEEEEeCccCCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNF---GE----QIWKRALIVLTHAQLSL 124 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~---g~----~~~~~~ivV~tk~D~~~ 124 (265)
+|++... ..+..+..+.+.+.... .. .-..++++|.||.|+..
T Consensus 354 ~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 354 LVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred EEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence 9966532 23445555555544422 11 12378899999999863
No 61
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=2.1e-12 Score=106.98 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=72.1
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhc-CC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLN-KT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~-~~ 75 (265)
+|.+|+|||||+|+|++.. ....+...++|....... + +.++.+|||||+....... +.+...+..++.. ..
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (196)
T PRK00454 30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTREN 106 (196)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCcc
Confidence 6999999999999999975 444454444444333222 2 4689999999986543221 2222333334432 35
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++++|++.+. .++..+..+.+.+... ..++++|+||+|+.
T Consensus 107 ~~~~~~v~d~~~-~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 107 LKGVVLLIDSRH-PLKELDLQMIEWLKEY-----GIPVLIVLTKADKL 148 (196)
T ss_pred ceEEEEEEecCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 678888855443 3555555566655432 27899999999984
No 62
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.46 E-value=1.3e-12 Score=108.96 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=96.3
Q ss_pred CCCCCCCHHHHHHHHhCCCc------cccc---------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA------VTVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~------~~~~---------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|++... .... ...+.|........+.++.+++++||||+. .+..
T Consensus 8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------~~~~ 80 (195)
T cd01884 8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-------DYIK 80 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-------HHHH
Confidence 69999999999999986410 0000 012344444444566678899999999983 2333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCC-cEEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK-RALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 144 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~-~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 144 (265)
.+...+ ..+|++++|++.+. .....+...+..+.+.. . ++|+|+||+|+.. .....+.+ .+.++++
T Consensus 81 ~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~~--~~~~~~~~---~~~i~~~ 147 (195)
T cd01884 81 NMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQVG-----VPYIVVFLNKADMVD--DEELLELV---EMEVREL 147 (195)
T ss_pred HHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCcEEEEEeCCCCCC--cHHHHHHH---HHHHHHH
Confidence 333322 37899999966553 36677777777776543 4 4789999999852 11111112 2345555
Q ss_pred HhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHh
Q 024586 145 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVV 200 (265)
Q Consensus 145 i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~ 200 (265)
+.+.+ ++. ..+|++.+++. ++.+... ..+| .+.|++.+.+.+
T Consensus 148 l~~~g-~~~-----~~v~iipiSa~----~g~n~~~----~~~w~~~~~~l~~~l~~~~ 192 (195)
T cd01884 148 LSKYG-FDG-----DNTPIVRGSAL----KALEGDD----PNKWVKKILELLDALDSYI 192 (195)
T ss_pred HHHhc-ccc-----cCCeEEEeeCc----cccCCCC----CCcchhcHhHHHHHHHhCC
Confidence 54432 111 13666655543 2221111 2467 467777776554
No 63
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.46 E-value=3.4e-12 Score=106.08 Aligned_cols=108 Identities=14% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.+|+|||||+|+|++........ ..+.|..........++..+.+|||||..+ +..
T Consensus 8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~ 80 (194)
T cd01891 8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD-------FGG 80 (194)
T ss_pred EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-------HHH
Confidence 6999999999999999632111111 122333334445566788999999999843 222
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+..++ .++|++++|++... ........++..+... ..|+++|+||+|+.
T Consensus 81 ~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~ 130 (194)
T cd01891 81 EVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 130 (194)
T ss_pred HHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 223222 37899999977664 2334444444444332 27899999999985
No 64
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.46 E-value=1.1e-12 Score=105.18 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++.+... ...+.+++..........++. .+.+|||||...... ....++ .++|+
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~~~~~ 75 (163)
T cd04136 7 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA-------MRDLYI--KNGQG 75 (163)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch-------HHHHHh--hcCCE
Confidence 69999999999999998763 233334443333444555654 567899999743321 111111 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++....+.-..+++.+.+.... ...|+++|+||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 99998877532112334455566554321 2379999999999853
No 65
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=2.5e-12 Score=103.65 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++++.+....... .+..+.........+++ ..+.+|||||... .......++ ..+|+
T Consensus 9 vG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~--~~~d~ 78 (165)
T cd01864 9 IGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY--RSANG 78 (165)
T ss_pred ECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--ccCCE
Confidence 699999999999999986532111 11111222333455566 4679999999521 111222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++..........++..+......+ .|+++|+||+|+...
T Consensus 79 ~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 79 AIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ 123 (165)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence 999988775322223346777776643332 789999999998643
No 66
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.45 E-value=2.9e-12 Score=106.07 Aligned_cols=160 Identities=16% Similarity=0.259 Sum_probs=99.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-----------------cCCCCCCCccEEEEee--eCCeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV-----------------STFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~-----------------~~~~~~t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..++|||||+++|++...... ......|......... ..+..++++||||..
T Consensus 9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~------- 81 (188)
T PF00009_consen 9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE------- 81 (188)
T ss_dssp EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-------
T ss_pred ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-------
Confidence 58999999999999996532100 0112345555566666 889999999999973
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHH
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL 141 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l 141 (265)
++...+.+.+ ..+|++++|++... .+.....+.++.+.... .|+++|+||+|+. ...+++.. +.+
T Consensus 82 ~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~---~~~~~~~~----~~~ 146 (188)
T PF00009_consen 82 DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILRELG-----IPIIVVLNKMDLI---EKELEEII----EEI 146 (188)
T ss_dssp HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT------SEEEEEETCTSS---HHHHHHHH----HHH
T ss_pred ceeeccccee--cccccceeeeeccc-ccccccccccccccccc-----cceEEeeeeccch---hhhHHHHH----HHH
Confidence 3333444333 47899999976653 37777888888877654 7899999999984 11222222 223
Q ss_pred H-HHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhC
Q 024586 142 L-KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 202 (265)
Q Consensus 142 ~-~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~ 202 (265)
+ .+++... +... ..+|++.++. .++.. +..|++.+.+.+|.
T Consensus 147 ~~~l~~~~~-~~~~----~~~~vi~~Sa----~~g~g-----------i~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 147 KEKLLKEYG-ENGE----EIVPVIPISA----LTGDG-----------IDELLEALVELLPS 188 (188)
T ss_dssp HHHHHHHTT-STTT----STEEEEEEBT----TTTBT-----------HHHHHHHHHHHS--
T ss_pred HHHhccccc-cCcc----ccceEEEEec----CCCCC-----------HHHHHHHHHHhCcC
Confidence 3 3333221 1100 1366665553 22221 88999999888763
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.45 E-value=1.6e-12 Score=104.19 Aligned_cols=112 Identities=21% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++... .+...+++.........+++. .+.+|||||..+... ....++ .++|+
T Consensus 8 ~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~--~~~~~ 76 (164)
T cd04145 8 VGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-------MREQYM--RTGEG 76 (164)
T ss_pred ECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-------HHHHHH--hhCCE
Confidence 69999999999999998753 333444443333334445554 578999999753321 122222 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++..-...-..++..+.+.... ...|+++|+||+|+..
T Consensus 77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 77 FLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccc
Confidence 99998877533112223455555544321 1379999999999853
No 68
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.45 E-value=1e-12 Score=115.34 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=72.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-CC------CCCCcc--EEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST-FQ------SEGPRP--VMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR 69 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~-~~------~~t~~~--~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~ 69 (265)
+|.+|+|||||||+|++........ .. ..+... ......-++. +++|+||||+++.-.. ...++.|..
T Consensus 10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~~~I~~ 88 (281)
T PF00735_consen 10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCWEPIVD 88 (281)
T ss_dssp EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhhHHHHH
Confidence 5999999999999999987543321 11 011111 1222333444 5799999999875322 222222222
Q ss_pred H--------H-----------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 70 F--------L-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 70 ~--------l-----------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+ + .+..+|++||+++....++.+.|.+.|+.|.+. .++|.|+.|+|..
T Consensus 89 yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l 155 (281)
T PF00735_consen 89 YIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence 2 1 124689999998877777999999999999886 7899999999984
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.44 E-value=3.3e-12 Score=102.51 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|++++.... ....++ +...........+ ..+.+|||||... .......++ .++|
T Consensus 6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~--~~~d 74 (168)
T cd04119 6 MGNSGVGKSCIIKRYCEGRFV--SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFY--KDTQ 74 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHh--ccCC
Confidence 699999999999999998742 222222 1111122333343 4678999999732 222222222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCc---CcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~---~~~~~~ivV~tk~D~~ 123 (265)
++++|++++..........+++.+.+...+ ....|+++|+||+|+.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 999998776532222334566667665542 1347999999999985
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=3.3e-12 Score=103.47 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++........ +..+.+........++ ..+.+|||||.. ........++ ..+|+
T Consensus 10 vG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~--~~~d~ 79 (168)
T cd01866 10 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQE-------SFRSITRSYY--RGAAG 79 (168)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHh--ccCCE
Confidence 6999999999999999876422211 1112222223334444 468999999952 1222222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|+++++......-..++..+.+...+. .|+++|+||.|+...
T Consensus 80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~ 124 (168)
T cd01866 80 ALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESR 124 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence 999988764322223345666665543322 789999999998643
No 71
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.43 E-value=1.2e-12 Score=105.47 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++..... ...+..+..........++. .+.+|||||... .......++ ..+++
T Consensus 9 vG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--~~~~~ 78 (165)
T cd01868 9 IGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY--RGAVG 78 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH--CCCCE
Confidence 6999999999999999886422 22222233333344555554 678999999632 111222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-.++++.+.+....+ .|+++|+||+|+..
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~ 122 (165)
T cd01868 79 ALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRH 122 (165)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 999987764221122234556565544322 78999999999854
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.43 E-value=1e-12 Score=106.65 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++... .....++...........++. .+.+|||||..+..... .. ...++|+
T Consensus 4 ~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~-~~~~~d~ 72 (174)
T smart00174 4 VGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR--------PL-SYPDTDV 72 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhc--------hh-hcCCCCE
Confidence 69999999999999999763 222222222222223444554 57899999975432111 11 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +......++..+.+... ..|+++|.||+|+.
T Consensus 73 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 115 (174)
T smart00174 73 FLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhh
Confidence 99998887533 33333456677766543 28999999999985
No 73
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.42 E-value=7.6e-13 Score=111.41 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|.+|+|||||+|+|++...+..+. ..+.|........++++.++.++||
T Consensus 5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDT 84 (208)
T cd04166 5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADT 84 (208)
T ss_pred EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEEC
Confidence 6999999999999999754322210 1234555555666788999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||+.+ +...+...+ ..+|++++|++... .....+......+.. .+. +++|+|+||+|+.
T Consensus 85 pG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 85 PGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLV 143 (208)
T ss_pred CcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHHH-cCC---CcEEEEEEchhcc
Confidence 99732 212222222 47899999976653 244444444444333 221 4678899999984
No 74
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.42 E-value=1.3e-12 Score=105.21 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|++..... ....++|.......... .+..+.+|||||..+. ......++ ..+|
T Consensus 6 iG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~--~~~d 75 (168)
T cd01887 6 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA--SLTD 75 (168)
T ss_pred EecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--hhcC
Confidence 6999999999999999876422 22222333333333444 3678999999997321 11111121 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++.+.. ........+..+... .+|+++|+||+|+.
T Consensus 76 ~il~v~d~~~~-~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~ 115 (168)
T cd01887 76 IAILVVAADDG-VMPQTIEAIKLAKAA-----NVPFIVALNKIDKP 115 (168)
T ss_pred EEEEEEECCCC-ccHHHHHHHHHHHHc-----CCCEEEEEEceecc
Confidence 99999777642 234444555554432 27999999999984
No 75
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.42 E-value=3e-12 Score=103.21 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++++++... ...+.+++.........+++. .+.+|||||..... .......+ ..+|+
T Consensus 5 vG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~------~~~d~ 74 (165)
T cd04146 5 LGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD--TEQLERSI------RWADG 74 (165)
T ss_pred ECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc--cchHHHHH------HhCCE
Confidence 69999999999999997652 333333332233334455555 57899999986311 11112222 27899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++.....+.-..++..+.+........|+++|+||+|+.
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 999988775321122234555555543212238999999999985
No 76
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.42 E-value=5.5e-12 Score=101.67 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++.... ....+..+..........++. .+.+|||||... .......++ ..+|+
T Consensus 8 ~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~~~~ 77 (166)
T cd01869 8 IGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYY--RGAHG 77 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHh--CcCCE
Confidence 699999999999999987632 221122222222333445554 678999999632 111222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++......-..+++.+.+...++ .|+++|+||+|+..
T Consensus 78 ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~ 121 (166)
T cd01869 78 IIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTD 121 (166)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhccc
Confidence 999987765221122234566665543222 78999999999853
No 77
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.41 E-value=2.8e-12 Score=103.24 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+++... ......+++..........++. .+.+|||||...... .. ..++ .++|+
T Consensus 7 ~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~--~~~d~ 75 (164)
T cd04175 7 LGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----MR---DLYM--KNGQG 75 (164)
T ss_pred ECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----HH---HHHH--hhCCE
Confidence 6999999999999999654 2333444444433444555654 457999999743221 11 1111 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++....+.-..++..+.+... ....|+++|+||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 76 FVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 9999887753311222345555554322 12379999999999953
No 78
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.41 E-value=4.2e-12 Score=101.96 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=70.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++++++.... ....++...........+|. .+.+|||||........ .. ++ .++|+
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~---~~--~~ad~ 75 (163)
T cd04176 7 LGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR----DL---YI--KNGQG 75 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchH----HH---HH--hhCCE
Confidence 699999999999999987632 22233333333344555664 46789999974332211 11 11 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.+.-..-..++..+.+.... ...|+++|+||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~ 119 (163)
T cd04176 76 FIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccch
Confidence 99998887633112234555666654321 237999999999985
No 79
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.41 E-value=3.6e-12 Score=112.97 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=79.7
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---CCCC----CCCccEEE--EeeeCCe--EEEEEeCCCCCCCCCC---cHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS---TFQS----EGPRPVMV--SRSRAGF--TLNIVDTPGLIEGGYV---NYHAIQL 66 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~---~~~~----~t~~~~~~--~~~~~g~--~v~iiDTPG~~~~~~~---~~~~~~~ 66 (265)
+|++|.||||++|+|++....... ...+ .|...... ...-+|. +++||||||++|.-.. .+-+.+.
T Consensus 29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~y 108 (373)
T COG5019 29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDY 108 (373)
T ss_pred ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHH
Confidence 699999999999999998432221 1111 11112222 2233454 5799999999985321 1222222
Q ss_pred HHH----HH------------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 67 IKR----FL------------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 67 i~~----~l------------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
|.. ++ .+..+|++||.++..+..+.+.|..+|+.|.+. .++|-|+.|+|...
T Consensus 109 I~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~lT 176 (373)
T COG5019 109 IDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccccCC
Confidence 211 22 235789999999888878999999999999987 79999999999853
No 80
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.41 E-value=2.3e-12 Score=104.04 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|++.+... ...+.++.. .........++ ..+.+|||||.... ......+ ..++|
T Consensus 7 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-------~~~~~~~--~~~~~ 75 (165)
T cd01865 7 IGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY-------RTITTAY--YRGAM 75 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHH--ccCCc
Confidence 69999999999999998763 222222211 11112233344 46899999996321 1111111 24889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
++++|++++.......-..+++.+.+..... .|+++|+||+|+.+.
T Consensus 76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~ 121 (165)
T cd01865 76 GFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDE 121 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcc
Confidence 9999988764321122245666665544332 789999999999543
No 81
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.41 E-value=3.3e-12 Score=106.01 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHhCCC------cccccCCCCCCCccEEEEeeeC--------------CeEEEEEeCCCCCCCCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRA--------------GFTLNIVDTPGLIEGGYVN 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~v~iiDTPG~~~~~~~~ 60 (265)
+|.+|+|||||+|+|++.. ........++|.........+. +..+.+|||||..
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~------ 79 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA------ 79 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH------
Confidence 5999999999999999741 1111112233433333333333 6789999999973
Q ss_pred HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 61 ~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.....+.. ....+|++++|++... ..+..+...+... ... ..|+++|+||+|+.
T Consensus 80 -~~~~~~~~--~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~ 133 (192)
T cd01889 80 -SLIRTIIG--GAQIIDLMLLVVDATK-GIQTQTAECLVIG-EIL----CKKLIVVLNKIDLI 133 (192)
T ss_pred -HHHHHHHH--HHhhCCEEEEEEECCC-CccHHHHHHHHHH-HHc----CCCEEEEEECcccC
Confidence 11122211 1136799999976553 2334443333322 222 26899999999984
No 82
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.41 E-value=2.9e-12 Score=103.28 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccc---ccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT---VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~---~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|.|.+..... ......+|.........+++..+.+|||||..+. ......++ .++|
T Consensus 5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~~ 75 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL-------RSLWDKYY--AECH 75 (167)
T ss_pred EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-------HHHHHHHh--CCCC
Confidence 6999999999999998753210 0111122333334456677899999999998432 11122222 4889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++.............+..+.+... ....|+++|+||+|+.
T Consensus 76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 76 AIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence 99999765532111111223332222111 1237999999999984
No 83
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.41 E-value=4.7e-12 Score=108.51 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|.|... .++.++.+|..+......+++.++.++||||+.+...........+.. ..+.+|+++
T Consensus 6 vG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~--~~~~ad~il 82 (233)
T cd01896 6 VGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIA--VARTADLIL 82 (233)
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHH--hhccCCEEE
Confidence 69999999999999999874 466677788878777788899999999999987644222211111111 124789999
Q ss_pred EEEecC
Q 024586 81 YVDRLD 86 (265)
Q Consensus 81 ~V~~~d 86 (265)
+|++.+
T Consensus 83 ~V~D~t 88 (233)
T cd01896 83 MVLDAT 88 (233)
T ss_pred EEecCC
Confidence 996544
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.41 E-value=7.6e-12 Score=100.28 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++....... .+..+..........++ ..+.+|||||... +......++ ..+|+
T Consensus 6 ~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~--~~~~~ 75 (161)
T cd04113 6 IGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-------FRSVTRSYY--RGAAG 75 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHH-------HHHhHHHHh--cCCCE
Confidence 699999999999999987642211 11111222222334444 4678999999732 112222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..++..+.....++ .|+++|+||+|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~ 119 (161)
T cd04113 76 ALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcch
Confidence 999988775332222245556565554433 78999999999854
No 85
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.40 E-value=3.1e-12 Score=103.49 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|++.+... ...+.++. ..........++. .+.+|||||.... ......++ ..+|
T Consensus 9 vG~~~~GKSsl~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~--~~ad 77 (167)
T cd01867 9 IGDSGVGKSCLLLRFSEDSF--NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF-------RTITTAYY--RGAM 77 (167)
T ss_pred ECCCCCCHHHHHHHHhhCcC--CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh--CCCC
Confidence 69999999999999998763 22222222 2222223445553 6789999996321 11112222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++++......-..++..+.+.... ..|+++|+||+|+..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 78 GIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEE 122 (167)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 999998876533112223566666654332 279999999999964
No 86
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.40 E-value=2.2e-12 Score=124.13 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=79.9
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 81 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~ 81 (265)
|.+|+|||||+|++.|... .+++.+++|.+......++++.++.++||||..+......+ .+..+.++....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 8999999999999999875 67778888877777777788999999999999764332211 112233444468899999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 82 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 82 V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
|++.+ +... +......+.+. ..|+++|+||+|+.+.
T Consensus 79 VvDat--~ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 79 VVDAS--NLER-NLYLTLQLLEL-----GIPMILALNLVDEAEK 114 (591)
T ss_pred EecCC--cchh-hHHHHHHHHhc-----CCCEEEEEehhHHHHh
Confidence 95443 3332 23333333332 2899999999998543
No 87
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.40 E-value=2.1e-12 Score=105.68 Aligned_cols=109 Identities=23% Similarity=0.220 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++.+.+... ...+.++...........++ ..+.+|||||........ ..++ .++|+
T Consensus 7 vG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~a~~ 75 (175)
T cd01874 7 VGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR-------PLSY--PQTDV 75 (175)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhh-------hhhc--ccCCE
Confidence 69999999999999998763 33333443332332445566 467899999985432111 1111 37899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +......++..+.+..+ ..|+++|+||+|+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR 118 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 99998887633 33333346666665432 27999999999984
No 88
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.40 E-value=2.8e-12 Score=107.59 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||++.+..... ...+.++ +.........++| ..+.+|||+|.... ......++ .++|
T Consensus 6 lG~~gVGKTSli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~-------~~l~~~y~--~~ad 74 (202)
T cd04120 6 IGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYY--RSAK 74 (202)
T ss_pred ECcCCCCHHHHHHHHHhCCC--CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh-------HHHHHHHh--cCCC
Confidence 69999999999999998763 2222222 2222333455666 56789999997322 11222222 4889
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++++.. +.. -..+++.+.+...++ .++++|.||+|+..
T Consensus 75 ~iIlVfDvtd~~Sf~~-l~~w~~~i~~~~~~~--~piilVgNK~DL~~ 119 (202)
T cd04120 75 GIILVYDITKKETFDD-LPKWMKMIDKYASED--AELLLVGNKLDCET 119 (202)
T ss_pred EEEEEEECcCHHHHHH-HHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 999999888643 333 345666666654443 78999999999953
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.40 E-value=3.7e-12 Score=101.62 Aligned_cols=111 Identities=21% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|++++..... ...+++ ...........+ ..+.+|||||..... .....++ ..+|
T Consensus 6 ~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--~~~~ 74 (162)
T cd04123 6 LGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH-------ALGPIYY--RDAD 74 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHH-------HhhHHHh--ccCC
Confidence 6999999999999999876422 111222 222222333334 367899999953211 1112222 3789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++++......-..+++.+...... ..|+++|+||+|+..
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 999998876533212233455666665543 379999999999853
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.40 E-value=2.2e-12 Score=103.38 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|++++..... ...++.. ........+++ ..+.+|||||... .......++ .++|
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~~~ 75 (163)
T cd01860 7 LGDSSVGKSSLVLRFVKNEFSE--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYY--RGAA 75 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHh--ccCC
Confidence 6999999999999999987422 1111111 11122334444 5678999999521 111111122 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|++++..........++..+...... ..++++|.||.|+.+
T Consensus 76 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~ 120 (163)
T cd01860 76 AAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES 120 (163)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 999998776433223334566666665433 378999999999853
No 91
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.40 E-value=3e-12 Score=126.13 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=83.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHH-HHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQ-LIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~-~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|+|.+. .+++.+++|.+........++.++.++||||..+...... ..-+ ..+.++....+|
T Consensus 9 vG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD 87 (772)
T PRK09554 9 IGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (772)
T ss_pred ECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence 69999999999999999875 7788888888877777788899999999999976432110 1111 223344556899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
++++|++.+ .... ...+...+.+.. .|+++|+||+|..+.+
T Consensus 88 ~vI~VvDat--~ler-~l~l~~ql~e~g-----iPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 88 LLINVVDAS--NLER-NLYLTLQLLELG-----IPCIVALNMLDIAEKQ 128 (772)
T ss_pred EEEEEecCC--cchh-hHHHHHHHHHcC-----CCEEEEEEchhhhhcc
Confidence 999995443 4333 334445555432 8999999999986433
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.40 E-value=2.8e-12 Score=101.33 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++...... ..+..+.......... ....+.+|||||... .......++ ..+|+
T Consensus 6 ~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--~~~d~ 75 (159)
T cd00154 6 IGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY--RGAHG 75 (159)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--cCCCE
Confidence 69999999999999999875332 1111111222223333 346789999999731 112222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++...--.....++..+...... ..|+++|+||+|+.
T Consensus 76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 118 (159)
T cd00154 76 AILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence 99998776522112223455555554422 28999999999985
No 93
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.39 E-value=8.6e-12 Score=103.40 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|.+.+... ..+...+++. ........+++ ..+.||||||.. ........++ .++|
T Consensus 6 vG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~--~~ad 75 (191)
T cd04112 6 LGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE-------RFRSVTHAYY--RDAH 75 (191)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH-------HHHHhhHHHc--cCCC
Confidence 69999999999999998764 2222222222 22222344555 467899999952 1111112222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|++++.......-..++..+.+..... .|+++|+||+|+..
T Consensus 76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~ 120 (191)
T cd04112 76 ALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSG 120 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchh
Confidence 9999987765221122345666666654333 79999999999853
No 94
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.39 E-value=2e-12 Score=112.32 Aligned_cols=116 Identities=25% Similarity=0.352 Sum_probs=88.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE-EEEEeCCCCCCCCCCcH----HHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT-LNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~-v~iiDTPG~~~~~~~~~----~~~~~i~~~l~~~~ 75 (265)
||-+++|||||+|+|...+. .+.+++.||..|......++++. ++|-|.||+.++...++ +.++.|.+
T Consensus 202 VG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER------ 274 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER------ 274 (366)
T ss_pred ecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh------
Confidence 68999999999999999987 88899999999999888887775 99999999999877664 78888884
Q ss_pred ccEEEEEEecCCcC-CCH-HHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYR-VDN-LDKQITRAITDNFGEQ-IWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r-~~~-~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~ 123 (265)
++.++||++++... .+. ++.+.+..-.+.+.+. ..+|.++|.||+|+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 48999998877642 122 2233333323333332 347899999999983
No 95
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.39 E-value=7.4e-12 Score=100.27 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC----CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA----GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~----g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (265)
+|.+|+|||||+|++.+... .....++. ........... ...+.+|||||..+ .......++ ++
T Consensus 6 vG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~ 74 (162)
T cd04106 6 VGNGNVGKSSMIQRFVKGIF--TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYY--RG 74 (162)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHh--cC
Confidence 69999999999999998753 12222221 11111222222 45789999999521 112222232 48
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+|++++|+++++......-..++..+.+... ..|+++|+||+|+.....
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccC
Confidence 8999999887753311222345555554332 279999999999854333
No 96
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=9.6e-12 Score=102.59 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+||||||++|.+.+...... .+|..+......+++.++.++||||.... ......++ .++|+++
T Consensus 23 vG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~--~~ad~ii 89 (184)
T smart00178 23 LGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF--PEVNGIV 89 (184)
T ss_pred ECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--CCCCEEE
Confidence 69999999999999999764222 12344445566678889999999997321 11222222 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||++..+.. +... ...+..+.+... ....|+++|+||+|+.
T Consensus 90 ~vvD~~~~~~~~~~-~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 131 (184)
T smart00178 90 YLVDAYDKERFAES-KRELDALLSDEE-LATVPFLILGNKIDAP 131 (184)
T ss_pred EEEECCcHHHHHHH-HHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 997665321 2111 222222222110 1237999999999983
No 97
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.39 E-value=4.3e-12 Score=101.21 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++... .....+++.........+++. .+.+|||||..+.. .....++ ..+|+
T Consensus 7 iG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~--~~~~~ 75 (162)
T cd04138 7 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYM--RTGEG 75 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHH--hcCCE
Confidence 69999999999999998763 233333333333334455554 46789999974321 1222222 36799
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +.. -..++..+.+.... ...|+++|+||+|+.
T Consensus 76 ~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~-~~~piivv~nK~Dl~ 119 (162)
T cd04138 76 FLCVFAINSRKSFED-IHTYREQIKRVKDS-DDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 99998877532 222 22344555544321 237999999999985
No 98
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.38 E-value=8.4e-12 Score=100.77 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|++.+... ....+++.. .........++. .+.+|||||... .......++ .++|
T Consensus 8 iG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~--~~~~ 76 (166)
T cd04122 8 IGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-------FRAVTRSYY--RGAA 76 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--cCCC
Confidence 69999999999999998753 222222221 121223344554 678999999631 112222222 4889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
++++|+++++......-..+++.+.....+. .|+++|.||+|+....
T Consensus 77 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 77 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccc
Confidence 9999988775321122234555554443333 7899999999995433
No 99
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.38 E-value=1.3e-11 Score=98.66 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHHHhc-CC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLLN-KT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~---~~~~~~~i~~~l~~-~~ 75 (265)
+|.+|+|||||+|+|++.. ....+...+.|..... ...++ .+.++||||+.+.... .+.....+..++.. ..
T Consensus 5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 6999999999999999543 2233333333333222 22233 8899999998765321 12233334444433 35
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++++++++.+. .....+..+++.+.... .|+++|+||+|+.
T Consensus 82 ~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~-----~~vi~v~nK~D~~ 123 (170)
T cd01876 82 LKGVVLLIDSRH-GPTEIDLEMLDWLEELG-----IPFLVVLTKADKL 123 (170)
T ss_pred hhEEEEEEEcCc-CCCHhHHHHHHHHHHcC-----CCEEEEEEchhcC
Confidence 688888865553 23455566666666542 7899999999984
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.38 E-value=6.2e-12 Score=102.12 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|++.+... .. . .+|...........+..+.+|||||..+... ....++ .++|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~--~~-~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~-------~~~~~~--~~ad~ii 71 (169)
T cd04158 5 LGLDGAGKTTILFKLKQDEF--MQ-P-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRP-------LWKHYY--LNTQAVV 71 (169)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CC-c-CCcCceeEEEEEECCEEEEEEECCCChhcch-------HHHHHh--ccCCEEE
Confidence 69999999999999998742 22 2 2233333344566788999999999753221 111111 3789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||++++... ++.. ..++..+.+... ....|+++|+||+|+.
T Consensus 72 ~V~D~s~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 113 (169)
T cd04158 72 FVVDSSHRDRVSEA-HSELAKLLTEKE-LRDALLLIFANKQDVA 113 (169)
T ss_pred EEEeCCcHHHHHHH-HHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence 998776532 3332 333333332211 1126899999999984
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.38 E-value=2.1e-12 Score=104.24 Aligned_cols=110 Identities=19% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....++............ ...+.+|||||..+....... + ...+|+
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~-------~--~~~~~~ 74 (171)
T cd00157 6 VGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL-------S--YPNTDV 74 (171)
T ss_pred ECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh-------h--cCCCCE
Confidence 699999999999999998741 111222222222223333 346899999998643221111 1 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++... +......++..+..... ..|+++|+||+|+..
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence 99998877522 44444556666665443 389999999999853
No 102
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.38 E-value=7e-12 Score=102.28 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++.+.+... .....++..........+++. .+.+|||||..+.. .....++ .++|+
T Consensus 8 vG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~l~~~~~--~~~d~ 76 (172)
T cd04141 8 LGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT-------AMRDQYM--RCGEG 76 (172)
T ss_pred ECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH-------HHhHHHh--hcCCE
Confidence 69999999999999998763 222223332233334556664 57899999974321 1112222 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++......-..+.+.+.+... ....|+++|+||+|+..
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLES 121 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhh
Confidence 9999888763322222345555555432 12379999999999853
No 103
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=1.3e-11 Score=103.19 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC-C--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA-G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~-g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||+|++++... ...+.++. .+.......+. + ..+.+|||||..... .....++ .++
T Consensus 6 vG~~~vGKTsli~~l~~~~~--~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~--~~a 74 (201)
T cd04107 6 IGDLGVGKTSIIKRYVHGIF--SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-------GMTRVYY--RGA 74 (201)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-------hhHHHHh--CCC
Confidence 69999999999999998753 12222221 11222233444 3 467899999973221 1112222 488
Q ss_pred cEEEEEEecCCcC-CCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCCC
Q 024586 77 DVLLYVDRLDVYR-VDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 77 d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~~ 124 (265)
|++++|++++... +.. -..++..+..... .....|+++|+||+|+.+
T Consensus 75 ~~~ilv~D~t~~~s~~~-~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 75 VGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred CEEEEEEECCCHHHHHH-HHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 9999998876532 222 2345555554321 123479999999999953
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.38 E-value=5.1e-12 Score=102.16 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++.+.... ...+. +.........+ .+.++.+|||||..+.. .....++ ..+|+
T Consensus 6 vG~~~vGKTsl~~~l~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~ad~ 73 (166)
T cd01893 6 IGDEGVGKSSLIMSLVSEEFP--ENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLAAEI--RKANV 73 (166)
T ss_pred ECCCCCCHHHHHHHHHhCcCC--ccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHhhhc--ccCCE
Confidence 699999999999999987632 22222 22222222233 34578999999975321 1122222 47899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++... +......+++.+..... ..|+++|+||+|+.+
T Consensus 74 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~ 117 (166)
T cd01893 74 ICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRD 117 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 99998876422 22222345666665432 389999999999953
No 105
>CHL00071 tufA elongation factor Tu
Probab=99.37 E-value=1.9e-11 Score=113.11 Aligned_cols=108 Identities=13% Similarity=0.017 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.+++|||||+|+|++......+ ...+.|........+.++.++.++||||.. ++..
T Consensus 18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-------~~~~ 90 (409)
T CHL00071 18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------DYVK 90 (409)
T ss_pred ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-------HHHH
Confidence 599999999999999975321100 012333333334455677889999999963 3333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
.+.+.+ ..+|++++|++.+. .+...+.+.+..+.... .| +|+++||+|+.
T Consensus 91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g-----~~~iIvvvNK~D~~ 141 (409)
T CHL00071 91 NMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQVG-----VPNIVVFLNKEDQV 141 (409)
T ss_pred HHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEEEccCCC
Confidence 333333 37899999966553 36677777777766542 45 78899999985
No 106
>PLN03118 Rab family protein; Provisional
Probab=99.37 E-value=5.7e-12 Score=106.16 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|+|++..... ..++ +.........+++ ..+.+|||||...... ....++ ..+|
T Consensus 20 vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~--~~~d 87 (211)
T PLN03118 20 IGDSGVGKSSLLVSFISSSVED---LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-------LTSSYY--RNAQ 87 (211)
T ss_pred ECcCCCCHHHHHHHHHhCCCCC---cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHH--hcCC
Confidence 6999999999999999876422 2222 1222223344444 4678999999743211 112222 3789
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|++++... +......+...+.. +......++++|.||+|+..
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccc
Confidence 999998776522 22222223333332 22222368899999999854
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.37 E-value=1e-11 Score=98.84 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++.. ..+...+++..........++ ..+.+|||||..+. ......++ ...|+
T Consensus 5 ~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~--~~~~~ 73 (160)
T cd00876 5 LGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------SAMRDLYI--RQGDG 73 (160)
T ss_pred ECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHH--hcCCE
Confidence 6999999999999999876 334444444444444455554 46789999997431 11122222 36799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..+...+....+. ...|+++|+||+|+..
T Consensus 74 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 74 FILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 99998776532222234455555554431 2389999999999864
No 108
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.37 E-value=2.2e-12 Score=104.37 Aligned_cols=109 Identities=23% Similarity=0.347 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee----------------------------------------
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------------------------- 40 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---------------------------------------- 40 (265)
+|..++|||||+|+|+|....+++.. ++|..+......-
T Consensus 4 ~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T PF00350_consen 4 VGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIEGK 82 (168)
T ss_dssp EEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHHTS
T ss_pred EcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccccc
Confidence 58999999999999999986554433 3444333211100
Q ss_pred ----------------CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHh
Q 024586 41 ----------------AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN 104 (265)
Q Consensus 41 ----------------~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~ 104 (265)
....+.++||||+.+...... +.+.+++ ..+|++|||.+.+. .++..+...+......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~~~ 156 (168)
T PF00350_consen 83 LEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQMLDP 156 (168)
T ss_dssp SS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHHTT
T ss_pred ccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHhcC
Confidence 011279999999977544333 3344444 58899999976653 2555555555544443
Q ss_pred cCcCcCCcEEEEEeCc
Q 024586 105 FGEQIWKRALIVLTHA 120 (265)
Q Consensus 105 ~g~~~~~~~ivV~tk~ 120 (265)
.. .++++|+||+
T Consensus 157 ~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 157 DK----SRTIFVLNKA 168 (168)
T ss_dssp TC----SSEEEEEE-G
T ss_pred CC----CeEEEEEcCC
Confidence 32 5699999985
No 109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.37 E-value=6.5e-12 Score=106.19 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||+|.+.+... ...+.++ +.+.......+. ...+.||||||.... ......++ ..+
T Consensus 6 vG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~--~~a 74 (215)
T cd04109 6 LGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKMLDKYI--YGA 74 (215)
T ss_pred ECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHHHHHHh--hcC
Confidence 69999999999999998763 2222222 223323334443 357899999996321 12222222 488
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 124 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~ 124 (265)
|++++|++++.......-..+++.+.+.... ....|+++|+||+|+..
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 9999998877533222234566777766543 22357899999999953
No 110
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.37 E-value=2.2e-11 Score=103.46 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||++++++.... . .. .|.........+....+.||||||...... .. ..++ ..+|+++
T Consensus 6 vG~~~vGKTSLi~r~~~~~f~--~-~~-~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----l~---~~~~--~~ad~~I 72 (220)
T cd04126 6 LGDMNVGKTSLLHRYMERRFK--D-TV-STVGGAFYLKQWGPYNISIWDTAGREQFHG----LG---SMYC--RGAAAVI 72 (220)
T ss_pred ECCCCCcHHHHHHHHhcCCCC--C-CC-CccceEEEEEEeeEEEEEEEeCCCcccchh----hH---HHHh--ccCCEEE
Confidence 699999999999999988742 1 11 222222333344567789999999743221 11 1111 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++++... +.... .++..+.+....+ .|+++|.||+|+..
T Consensus 73 lV~Dvt~~~Sf~~l~-~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 73 LTYDVSNVQSLEELE-DRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 998887633 33332 3444444443333 68999999999853
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.36 E-value=7.1e-12 Score=100.25 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.+... ......+ |...........+..+.+|||||..+. ......++ .++|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~-~~~~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ii 73 (162)
T cd04157 5 VGLDNSGKTTIINQLKPENA-QSQIIVP-TVGFNVESFEKGNLSFTAFDMSGQGKY-------RGLWEHYY--KNIQGII 73 (162)
T ss_pred ECCCCCCHHHHHHHHcccCC-CcceecC-ccccceEEEEECCEEEEEEECCCCHhh-------HHHHHHHH--ccCCEEE
Confidence 69999999999999998753 1222222 222222334457788999999997422 11222222 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcC-cCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g-~~~~~~~ivV~tk~D~~ 123 (265)
+|++..+..-.......++.+.+... .....|+++|+||+|+.
T Consensus 74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 74 FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 99776542111112233444433211 11238999999999984
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.36 E-value=5.6e-12 Score=101.49 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||++++++...... ..++ ...........++ ..+.+|||||..... .....++ ..+|
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~d 74 (161)
T cd04124 6 LGDSAVGKSKLVERFLMDGYEPQ--QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYY--HKAH 74 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCC--cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHh--CCCC
Confidence 69999999999999998753111 1111 1111222333444 467899999974221 1222222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++++..........++..+.+... ..|+++|+||+|+.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 99999887642211223456666665432 27999999999983
No 113
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.36 E-value=5e-12 Score=104.70 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++.+++.... ..+.++...........++ ..+.+|||||..+...... .+ -.++|+
T Consensus 6 vG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~-------~~--~~~a~~ 74 (189)
T cd04134 6 LGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRS-------LS--YADTDV 74 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccc-------cc--ccCCCE
Confidence 699999999999999987642 2222222222222333444 4679999999743321111 01 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +......++..+..... ..|+++|.||+|+.
T Consensus 75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~ 117 (189)
T cd04134 75 IMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 99999888643 43333456777765432 37999999999984
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.36 E-value=1.4e-11 Score=99.88 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|.+.+... .... .|..........++..+.++||||... .......++ ..+|+++
T Consensus 5 ~G~~~~GKTsl~~~l~~~~~---~~~~-~t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~a~~ii 71 (167)
T cd04161 5 VGLDNAGKTTLVSALQGEIP---KKVA-PTVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYY--AEAHGLV 71 (167)
T ss_pred ECCCCCCHHHHHHHHhCCCC---cccc-CcccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHH--cCCCEEE
Confidence 69999999999999998621 1222 222233445566788999999999632 112222232 4889999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||++.++......-..++..+.+... ....|+++|+||.|+.
T Consensus 72 ~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 72 FVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred EEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 99776642211112334444433211 1237999999999984
No 115
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.36 E-value=8.4e-12 Score=107.83 Aligned_cols=113 Identities=21% Similarity=0.198 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++... ...+.+++.........+++ ..+.||||+|..+.. .+... ....+|+
T Consensus 6 lG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~-~~~~ad~ 74 (247)
T cd04143 6 LGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRL-SILTGDV 74 (247)
T ss_pred ECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHH-HhccCCE
Confidence 69999999999999998763 22333343333344455666 467899999974321 11111 1137899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcC-------cCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFG-------EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g-------~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++....+.-..+++.+.+... .....|+++|+||+|+..
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 9999988863211223455556654311 112479999999999954
No 116
>COG2262 HflX GTPases [General function prediction only]
Probab=99.36 E-value=7.3e-12 Score=112.49 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=84.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~ 78 (265)
+|-|++|||||+|+|+|..+ .+.+.-..|.+++.....+. |+.+.+-||-||.+ ..+....+..+..| ....+|+
T Consensus 198 vGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTLEE~~~aDl 274 (411)
T COG2262 198 VGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTLEEVKEADL 274 (411)
T ss_pred EeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHHHHhhcCCE
Confidence 69999999999999999886 44455567777777777776 79999999999975 34445555555555 2358999
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|.|++.++...........+.|.++...+ +|+|+|+||.|..
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~ 317 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLL 317 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEeccccc
Confidence 999976665433333334445555553344 8999999999975
No 117
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.36 E-value=9.1e-12 Score=100.31 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++.+++.... ....+..+..........++ ..+.+|||||..... .....++ ..+|+
T Consensus 6 vG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~--~~~~~ 75 (161)
T cd04117 6 IGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ-------TITKQYY--RRAQG 75 (161)
T ss_pred ECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-------hhHHHHh--cCCcE
Confidence 699999999999999987642 11111111222233445555 457899999963211 1122222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
+++|+++++......-..+++.+...... ..++++|.||.|+...+
T Consensus 76 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 76 IFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQKR 121 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence 99999887643222334566666554322 37899999999985433
No 118
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.35 E-value=1.9e-11 Score=98.96 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+||||++|++.+... .....+++.........+++ ..+.+|||||........ ..++ .++|+
T Consensus 7 iG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~~~ 75 (168)
T cd04177 7 LGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR-------ELYI--KSGQG 75 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------HHHH--hhCCE
Confidence 69999999999999997763 22233333333233334444 467899999975432211 1111 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|+++++...-.....+.+.+.+.... ...|+++|+||.|+...
T Consensus 76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 76 FLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDD 121 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhcccc
Confidence 99998777532222234455666554432 23799999999998543
No 119
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.35 E-value=1.1e-11 Score=100.14 Aligned_cols=114 Identities=18% Similarity=0.076 Sum_probs=66.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++.... ....+..+.........+.+. .+.+|||||.... ......++ .++|+
T Consensus 6 iG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d~ 75 (172)
T cd01862 6 LGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF-------QSLGVAFY--RGADC 75 (172)
T ss_pred ECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------HhHHHHHh--cCCCE
Confidence 699999999999999998642 111111122222233445554 4679999996321 11112222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..+.+.+...... ....|+++|+||+|+.+
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 76 CVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99998776532111122334444333321 12379999999999964
No 120
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.35 E-value=7.2e-12 Score=101.97 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++.... ...+ |.........+++..+.+|||||.... ......++ .++|+++
T Consensus 20 vG~~~~GKTsL~~~l~~~~~~---~~~~-t~g~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--~~~d~~i 86 (173)
T cd04154 20 LGLDNAGKTTILKKLLGEDID---TISP-TLGFQIKTLEYEGYKLNIWDVGGQKTL-------RPYWRNYF--ESTDALI 86 (173)
T ss_pred ECCCCCCHHHHHHHHccCCCC---CcCC-ccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--CCCCEEE
Confidence 699999999999999987532 1212 222223345567889999999997421 11222222 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.++.. +... ..++..+.+.. .....|+++|+||+|+.
T Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 87 WVVDSSDRLRLDDC-KRELKELLQEE-RLAGATLLILANKQDLP 128 (173)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhCh-hhcCCCEEEEEECcccc
Confidence 998776532 2222 22333332211 11238999999999984
No 121
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.35 E-value=2.1e-11 Score=99.40 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-----cCC---------CCCCCccEEEEeee-----CCeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV-----STF---------QSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~-----~~~---------~~~t~~~~~~~~~~-----~g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|.+|+|||||+|+|++...... ..+ .+.|.........+ .+..+.+|||||..+.
T Consensus 6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 80 (179)
T cd01890 6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF----- 80 (179)
T ss_pred EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-----
Confidence 69999999999999998532110 000 11222222222222 3567889999998542
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+..++ .++|++++|++... ..+..+...+..+.. . ..|+++|+||+|+.
T Consensus 81 --~~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 81 --SYEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---N--NLEIIPVINKIDLP 132 (179)
T ss_pred --HHHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 22223332 37899999977653 233334333333322 1 27899999999984
No 122
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.34 E-value=5.5e-12 Score=102.66 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++++++.. ....+.+++..........++ ..+.+|||||....... ... ...++|+
T Consensus 6 ~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~-~~~~a~~ 74 (173)
T cd04130 6 VGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL--------RPL-CYPDTDV 74 (173)
T ss_pred ECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc--------ccc-ccCCCcE
Confidence 5999999999999998865 233344443333333445555 46688999998433211 111 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +......++..+..... ..|+++|+||+|+.
T Consensus 75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 117 (173)
T cd04130 75 FLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLR 117 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhc
Confidence 99998877533 43333456666665322 27999999999985
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.34 E-value=1.2e-11 Score=98.72 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|++++..... . ..|.........+.+..+.+|||||..... .....++ ..+|+++
T Consensus 5 iG~~~~GKssli~~~~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~--~~~~~~i 71 (158)
T cd00878 5 LGLDGAGKTTILYKLKLGEVVT---T-IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYY--ENTNGII 71 (158)
T ss_pred EcCCCCCHHHHHHHHhcCCCCC---C-CCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--ccCCEEE
Confidence 6999999999999999987311 1 122223334455678899999999974321 1112222 3779999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+++.... +... ...+..+..... ....|+++|+||+|+.
T Consensus 72 ~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~ 113 (158)
T cd00878 72 FVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence 997766421 2222 223333322211 1237999999999985
No 124
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.34 E-value=1.9e-11 Score=98.93 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||++++.+... .....++. ..........+.++.+|||||...... .....+ .++|+++
T Consensus 5 vG~~~vGKTsli~~~~~~~~--~~~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~~~---~~~~~~------~~ad~ii 72 (164)
T cd04162 5 LGLDGAGKTSLLHSLSSERS--LESVVPTT-GFNSVAIPTQDAIMELLEIGGSQNLRK---YWKRYL------SGSQGLI 72 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCC--cccccccC-CcceEEEeeCCeEEEEEECCCCcchhH---HHHHHH------hhCCEEE
Confidence 69999999999999998753 22222221 122234455678899999999743221 111122 3789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||++.++.......+.++..+.... ...|+++|.||.|+.
T Consensus 73 ~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~ 112 (164)
T cd04162 73 FVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLP 112 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCc
Confidence 9977664221112223333333221 238999999999984
No 125
>PTZ00369 Ras-like protein; Provisional
Probab=99.34 E-value=1.8e-11 Score=101.29 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++++.+... .....++..........+++. .+.+|||||..+.... ...++ .++|+
T Consensus 11 iG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l-------~~~~~--~~~d~ 79 (189)
T PTZ00369 11 VGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAM-------RDQYM--RTGQG 79 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhh-------HHHHh--hcCCE
Confidence 69999999999999998763 222233332333333344544 5678999998543221 11122 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++......-..+.+.+.+.... ...|+++|.||+|+.
T Consensus 80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 80 FLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 99998877533212334555666554322 136899999999984
No 126
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.34 E-value=9.9e-12 Score=100.31 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++++.+... .....+..+.........+.+. .+.++||||..+. ......++ ..+|+
T Consensus 13 ~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d~ 82 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYY--RSANA 82 (169)
T ss_pred ECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--cCCCE
Confidence 69999999999999997653 1111111222333334556664 5788999996321 11112222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..++..+......+ .|+++|+||+|+.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~ 126 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAE 126 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 999987764221111234555565554333 78899999999853
No 127
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.34 E-value=2.8e-11 Score=97.14 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||++++.+........+.+++ .......... ...++.+|||||.. ........++ ..+
T Consensus 6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------~~~~~~~~~~--~~~ 76 (164)
T cd04101 6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-------LYSDMVSNYW--ESP 76 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-------HHHHHHHHHh--CCC
Confidence 699999999999999864221222332222 1111122222 23678999999962 1112223333 478
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
|++++|+++++......-..+++.+.... ...|+++|+||+|+.+
T Consensus 77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 77 SVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 99999988775221122245556555542 2379999999999853
No 128
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.34 E-value=1.5e-11 Score=102.66 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||++++++.... ..+.++ +...........| ..+.+|||||..... .....++ ..+|
T Consensus 12 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~--~~a~ 80 (199)
T cd04110 12 IGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-------TITSTYY--RGTH 80 (199)
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH-------HHHHHHh--CCCc
Confidence 699999999999999987631 111111 1122222334445 467899999963211 1112222 4689
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++........-..+++.+..... ..|+++|+||+|+.+
T Consensus 81 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~ 124 (199)
T cd04110 81 GVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPE 124 (199)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 99999877643211222345565555432 278999999999853
No 129
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.34 E-value=5.9e-12 Score=103.95 Aligned_cols=111 Identities=22% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++..... ...+..+.+........++. .+.+|||||.... ......++ .++|+
T Consensus 6 ~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~~~~~~~~--~~~d~ 75 (188)
T cd04125 6 IGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF-------RSLNNSYY--RGAHG 75 (188)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HhhHHHHc--cCCCE
Confidence 6999999999999999886421 11111122222233445543 5689999996321 11112222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++......-..+++.+....+.. .|+++|+||.|+.
T Consensus 76 iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~ 118 (188)
T cd04125 76 YLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLV 118 (188)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCc
Confidence 999988775321122234666666654433 7899999999985
No 130
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.34 E-value=8.2e-12 Score=101.70 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|++++... ...+.++.. .........+| ..+.+|||||..... .....+ ..++|
T Consensus 6 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~--~~~ad 74 (170)
T cd04108 6 VGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK-------CIASTY--YRGAQ 74 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------hhHHHH--hcCCC
Confidence 69999999999999999763 233322222 22223344455 467999999973211 111111 14889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|+++++.........+++.+.+...+. ..|+++|.||+|+.
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~ 119 (170)
T cd04108 75 AIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcC
Confidence 9999988865322233445666665433221 15789999999985
No 131
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.34 E-value=7.9e-12 Score=101.44 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++.+... .....++...........++. .+.+|||||..+....... .-.++|+
T Consensus 6 ~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~~~~~~ 74 (174)
T cd04135 6 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SYPMTDV 74 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cCCCCCE
Confidence 69999999999999998763 222222322222233445554 4679999997543221110 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.+ +......+++.+... .. ..|+++|+||+|+.
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~ 117 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhh
Confidence 99998877533 333334556666544 22 38999999999984
No 132
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.33 E-value=9.5e-12 Score=101.75 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+.++++... ...+.++...........++ ..+.+|||||........ ..++ .++|+
T Consensus 7 iG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~~d~ 75 (174)
T cd01871 7 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY--PQTDV 75 (174)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------hhhc--CCCCE
Confidence 69999999999999998652 23333333222222344555 467899999974322111 1111 47899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|+++++.. +......+++.+..... ..|+++|.||+|+.
T Consensus 76 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~ 118 (174)
T cd01871 76 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 118 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence 99999887532 33333346666655432 37999999999984
No 133
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.33 E-value=9.9e-12 Score=102.88 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccE-EEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~-~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|++++... ..+.+.++..... ......+|. .+.+|||||....... ...++ .++|
T Consensus 6 vG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~--~~~d 75 (193)
T cd04118 6 LGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM-------SRIYY--RGAK 75 (193)
T ss_pred ECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh-------hHhhc--CCCC
Confidence 69999999999999998764 2223333322222 224455665 4569999997432111 11111 3789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++++.....+....+++.+..... ..|+++|+||+|+.
T Consensus 76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 118 (193)
T cd04118 76 AAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccc
Confidence 99999887642211222356666655322 27999999999985
No 134
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.33 E-value=1.4e-11 Score=101.16 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||++.+..... ...+.++...........++. ++.+|||+|..+...... .++ .++|+
T Consensus 7 ~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~-------~~~--~~a~~ 75 (176)
T cd04133 7 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP-------LSY--RGADV 75 (176)
T ss_pred ECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccch-------hhc--CCCcE
Confidence 69999999999999998763 333333332223333445554 578999999854332211 111 48899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|+++++.. |......++..+.+..+ + .|+++|.||+|+.
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~ 118 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhc
Confidence 99999988644 43333567777766543 2 7999999999995
No 135
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=8.4e-12 Score=102.55 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++++.+... ...+.++..........+++. .+.+|||+|..... .+... .-+++|+
T Consensus 7 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~--------~~~~~-~~~~a~~ 75 (178)
T cd04131 7 VGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD--------NVRPL-CYPDSDA 75 (178)
T ss_pred ECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh--------hcchh-hcCCCCE
Confidence 69999999999999998752 233333322222233445554 57899999963221 11111 1248899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|+++++.. +......+++.+.+..+ . .|+++|.||+|+.
T Consensus 76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~ 118 (178)
T cd04131 76 VLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhh
Confidence 99999887633 33323467777776543 2 7999999999984
No 136
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.33 E-value=9.7e-12 Score=101.06 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+++|..... .. ..++ ...........+..+.+|||||.... ......++ .++|+++
T Consensus 15 ~G~~~~GKTsli~~l~~~~~--~~-~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~a~~ii 81 (168)
T cd04149 15 LGLDAAGKTTILYKLKLGQS--VT-TIPT-VGFNVETVTYKNVKFNVWDVGGQDKI-------RPLWRHYY--TGTQGLI 81 (168)
T ss_pred ECcCCCCHHHHHHHHccCCC--cc-ccCC-cccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--ccCCEEE
Confidence 69999999999999987553 22 2222 22222344456788999999997321 11112222 3789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||+++++.. +......+.+.+.....+ ..|+++|+||+|+.
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 123 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLP 123 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCc
Confidence 998776532 322222222222221111 27999999999984
No 137
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.33 E-value=8.5e-12 Score=107.93 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=84.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-----hcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-----LNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-----~~~~ 75 (265)
||.+++|||||.|.++|.+++.++....+|++.......-+..++.++||||+......-...+. ...+ ....
T Consensus 78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~--~s~lq~~~~a~q~ 155 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM--MSVLQNPRDAAQN 155 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH--HHhhhCHHHHHhh
Confidence 69999999999999999999999998888888888888888899999999999876543322111 1111 1247
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++++|+++.++| +...-..+..+.+.- ..|.++|+||.|...
T Consensus 156 AD~vvVv~Das~tr-~~l~p~vl~~l~~ys----~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 156 ADCVVVVVDASATR-TPLHPRVLHMLEEYS----KIPSILVMNKIDKLK 199 (379)
T ss_pred CCEEEEEEeccCCc-CccChHHHHHHHHHh----cCCceeeccchhcch
Confidence 89999997777544 122233444444432 178999999999853
No 138
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.33 E-value=5.6e-12 Score=103.79 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=66.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-C--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|++++... .....+++........... + ..+.+|||||..+. ..+... ...++|
T Consensus 6 vG~~~vGKTsli~~l~~~~~--~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~-~~~~ad 74 (187)
T cd04132 6 VGDGGCGKTCLLIVYSQGKF--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY--------DRLRPL-SYPDVD 74 (187)
T ss_pred ECCCCCCHHHHHHHHHhCcC--CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH--------HHHHHH-hCCCCC
Confidence 69999999999999998763 2222222222222223332 3 46799999996321 111111 124889
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|+++++.. +......++..+.... + ..|+++|+||.|+.
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~ 118 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVNHFC-P--GTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhh
Confidence 999998877532 3222234555554432 2 27999999999984
No 139
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.33 E-value=2.5e-11 Score=99.04 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||++.|.+...... ..|.........+++..+.++||||.... ......++ .++|+++
T Consensus 21 ~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~~d~vi 87 (174)
T cd04153 21 VGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYY--TNTDAVI 87 (174)
T ss_pred ECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHh--hcCCEEE
Confidence 59999999999999987654222 12333333456667889999999997321 11112222 3889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.+... +... ...+..+.+.-+ ....|+++|+||+|+.
T Consensus 88 ~V~D~s~~~~~~~~-~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 88 LVIDSTDRERLPLT-KEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 997765421 2111 222222222111 1137999999999984
No 140
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.33 E-value=1.8e-11 Score=97.90 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|++.+....... .|.......... .+..+.+|||||.... ......++ ..+|++
T Consensus 5 ~G~~~~GKTsl~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~--~~~~~i 71 (160)
T cd04156 5 LGLDSAGKSTLLYKLKHAELVTTI----PTVGFNVEMLQLEKHLSLTVWDVGGQEKM-------RTVWKCYL--ENTDGL 71 (160)
T ss_pred EcCCCCCHHHHHHHHhcCCccccc----CccCcceEEEEeCCceEEEEEECCCCHhH-------HHHHHHHh--ccCCEE
Confidence 699999999999999998753221 122111222223 3468999999997321 11122222 378999
Q ss_pred EEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+... +.... ..+..+.+... ....|+++|+||+|+.
T Consensus 72 v~v~D~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (160)
T cd04156 72 VYVVDSSDEARLDESQ-KELKHILKNEH-IKGVPVVLLANKQDLP 114 (160)
T ss_pred EEEEECCcHHHHHHHH-HHHHHHHhchh-hcCCCEEEEEECcccc
Confidence 9997765421 22222 22332222111 0238999999999984
No 141
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.33 E-value=8.3e-12 Score=101.15 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEE--eee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS--RSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~--~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||+|+++.... ..... .|....... ... ....+.+|||||.......... ++ .++
T Consensus 6 vG~~~vGKTsli~~~~~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~ 73 (166)
T cd00877 6 VGDGGTGKTTFVKRHLTGEF--EKKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDG-------YY--IGG 73 (166)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHH-------Hh--cCC
Confidence 69999999999999996652 11111 222212212 222 3357899999998543322211 11 378
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|++++|++++.......-..+++.+.+..+ ..|+++|+||+|+.
T Consensus 74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 74 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 999999887753211222356667766554 38999999999984
No 142
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9.4e-12 Score=111.03 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=79.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------CCCCCCccE--EEEeeeCCe--EEEEEeCCCCCCCCCC---cHHHHH--
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST------FQSEGPRPV--MVSRSRAGF--TLNIVDTPGLIEGGYV---NYHAIQ-- 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~------~~~~t~~~~--~~~~~~~g~--~v~iiDTPG~~~~~~~---~~~~~~-- 65 (265)
+|.+|.|||||||+|++........ -...|.... ....+-+|. +++|+||||++|.-.. .+-..+
T Consensus 27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi 106 (366)
T KOG2655|consen 27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYI 106 (366)
T ss_pred ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHH
Confidence 6999999999999999985321100 111122222 223344565 5699999999985221 111111
Q ss_pred --HHHHHHh-----------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 66 --LIKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 66 --~i~~~l~-----------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
....+++ +..+|++||.++..+..+.+.|..+++.+... .++|-|+.|+|...
T Consensus 107 ~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 107 DSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred HHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence 1222331 24789999998888877999999999999887 68999999999853
No 143
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.33 E-value=1.2e-11 Score=98.95 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|...... .. . .|...........+..+.+|||||..+. ......++ .++|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~--~~-~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~ii 71 (158)
T cd04151 5 LGLDNAGKTTILYRLQLGEVV--TT-I-PTIGFNVETVTYKNLKFQVWDLGGQTSI-------RPYWRCYY--SNTDAII 71 (158)
T ss_pred ECCCCCCHHHHHHHHccCCCc--Cc-C-CccCcCeEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--cCCCEEE
Confidence 699999999999999876532 21 1 2222223345567789999999998421 11112222 3789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.+... +......+...+..... ..+|+++|+||+|+.
T Consensus 72 ~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 113 (158)
T cd04151 72 YVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMP 113 (158)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCC
Confidence 997766421 22222223222322111 138999999999984
No 144
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.32 E-value=2.8e-12 Score=97.76 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc---cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV---STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~---~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+++|++...... ......+..........+...+.++|++|........... +. .+|
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~~------~~d 75 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---LK------KAD 75 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---HH------HSC
T ss_pred ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---hh------cCc
Confidence 59999999999999998875311 1111112111122222334458899999984332222211 23 679
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
++++|+++++.. +.. -.++++.+....+.....|+++|.||.|
T Consensus 76 ~~ilv~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 76 AVILVYDLSDPESLEY-LSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEECCGHHHHHH-HHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEEcCCChHHHHH-HHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999998877532 211 1233344444432222389999999998
No 145
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.32 E-value=4.2e-11 Score=94.67 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|.+.+. .....+ |..........++..+.+|||||... .......++ ..+|+++
T Consensus 5 ~G~~~~GKssl~~~l~~~~~--~~~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~--~~~d~ii 72 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQF--SEDTIP-TVGFNMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYC--RGVNAIV 72 (159)
T ss_pred EcCCCCCHHHHHHHHccCCC--CcCccC-CCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHH--hcCCEEE
Confidence 69999999999999999863 222222 22222234455678899999999732 222223333 3789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++...........+..+..... ....|+++|+||+|+.
T Consensus 73 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 73 YVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 99766532111111122222222111 1237899999999984
No 146
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.32 E-value=5.1e-11 Score=97.30 Aligned_cols=112 Identities=17% Similarity=0.083 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeee------------CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSR------------AGFTLNIVDTPGLIEGGYVNYHAIQLI 67 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~------------~g~~v~iiDTPG~~~~~~~~~~~~~~i 67 (265)
+|.+|||||||+|++.+... .....++ +.........+ ....+.+|||||.. ......
T Consensus 10 vG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~ 80 (180)
T cd04127 10 LGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------RFRSLT 80 (180)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------HHHHHH
Confidence 69999999999999998753 2222211 11111111222 23578999999952 222222
Q ss_pred HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
..++ .++|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus 81 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 81 TAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC-ENPDIVLCGNKADLED 134 (180)
T ss_pred HHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEeCccchh
Confidence 2222 4789999998877532112223455555543211 1268999999999954
No 147
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.32 E-value=2.3e-11 Score=98.70 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||++++++... . ....++ +.........+.+ ..+.+|||||..+.. . .....++ ..+|
T Consensus 8 vG~~~vGKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~---~~~~~~~--~~~d 77 (170)
T cd04115 8 IGDSNVGKTCLTYRFCAGRF-P-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---K---SMVQHYY--RNVH 77 (170)
T ss_pred ECCCCCCHHHHHHHHHhCCC-C-CccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---H---hhHHHhh--cCCC
Confidence 69999999999999998653 1 111111 1112222344555 568999999963211 0 1122222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|++++.......-..+++.+..... ....|+++|+||+|+..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 78 AVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLRE 123 (170)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 99999888753322233445555554432 12379999999999853
No 148
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.32 E-value=3.3e-11 Score=96.36 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.. .....++ ...|+
T Consensus 6 ~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~--~~~~~ 74 (164)
T cd04139 6 VGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYH--RSGEG 74 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHh--hcCCE
Confidence 69999999999999998763 23333444333333344444 467999999974321 1112222 36789
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..++..+..... ....|+++|+||+|+..
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 9999777643211122344455554422 12389999999999853
No 149
>PLN03110 Rab GTPase; Provisional
Probab=99.32 E-value=4.5e-11 Score=101.19 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+++|++..... ...+..+.........+++ ..+.+|||||... .......++ ..+|+
T Consensus 18 vG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~--~~~~~ 87 (216)
T PLN03110 18 IGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY--RGAVG 87 (216)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--CCCCE
Confidence 6999999999999999876421 1111111222233444555 4678999999621 222222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++.....+.-..++..+......+ .|+++|+||+|+...
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc
Confidence 999988765332233345666666654433 789999999998533
No 150
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.31 E-value=1.8e-11 Score=101.56 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|..|||||||++++.+... ...+.++ +..........++ ..+.+|||||..... .....+. .++|
T Consensus 12 iG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~--~~ad 80 (189)
T cd04121 12 VGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYS--RGAQ 80 (189)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh--cCCC
Confidence 69999999999999998652 2222222 2222233445566 467899999984221 1122222 4889
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|+|++++... ++.. ..+++.+.+... ..|+++|.||.|+..
T Consensus 81 ~illVfD~t~~~Sf~~~-~~w~~~i~~~~~---~~piilVGNK~DL~~ 124 (189)
T cd04121 81 GIILVYDITNRWSFDGI-DRWIKEIDEHAP---GVPKILVGNRLHLAF 124 (189)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCC---CCCEEEEEECccchh
Confidence 999999888644 4443 567778866543 279999999999953
No 151
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.31 E-value=1.4e-11 Score=100.00 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++++.+... .....++..........+++. .+.+|||||..+...... . ...++|+
T Consensus 7 iG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~--~~~~~d~ 75 (175)
T cd01870 7 VGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------L--SYPDTDV 75 (175)
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------c--ccCCCCE
Confidence 69999999999999998763 222222322222234445554 578999999743221111 1 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +......++..+.+... ..|+++|+||+|+.
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence 99998887532 23333345555554332 27999999999985
No 152
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.31 E-value=1.5e-11 Score=102.51 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=69.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++... ...+.+++.........+++ ..+.+|||||..+... .. ..++ ..+|+
T Consensus 5 vG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~--~~ad~ 73 (198)
T cd04147 5 MGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----MR---KLSI--QNSDA 73 (198)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----HH---HHHh--hcCCE
Confidence 69999999999999998763 23333333333334455666 4678999999743211 11 1111 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++...-......++..+.+.... ...|+++|+||+|+.+
T Consensus 74 vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 74 FALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 99998776422112223444555554331 2389999999999853
No 153
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.31 E-value=3.5e-11 Score=96.77 Aligned_cols=108 Identities=11% Similarity=0.149 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||++++..... .+ ..++ ..............+.+|||||... .......++ .++|+++
T Consensus 6 ~G~~~~GKTsli~~l~~~~~--~~-~~pt-~g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~ad~~i 72 (159)
T cd04150 6 VGLDAAGKTTILYKLKLGEI--VT-TIPT-IGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF--QNTQGLI 72 (159)
T ss_pred ECCCCCCHHHHHHHHhcCCC--cc-cCCC-CCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHh--cCCCEEE
Confidence 69999999999999976543 22 2222 2222233455678899999999732 111222222 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||++.+... ++.....+.+.+...... ..|+++|+||.|+.
T Consensus 73 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~ 114 (159)
T cd04150 73 FVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP 114 (159)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence 998776422 333322222222221111 27999999999984
No 154
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.30 E-value=1.6e-11 Score=98.23 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++...... ..+..+.+.......+++ ..+.+|||||..... .....++ +.+|+
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~~~d~ 75 (161)
T cd01863 6 IGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR-------TLTSSYY--RGAQG 75 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCcc-cCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHHHh--CCCCE
Confidence 69999999999999998764221 111111222222233444 568999999963221 1112222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++......-..++..+.+... ....|+++|+||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 76 VILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 9999887642211222335555555433 2237899999999985
No 155
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.30 E-value=2.7e-11 Score=98.98 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+..... ..++ ...|+
T Consensus 7 ~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~~ 75 (180)
T cd04137 7 LGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP-------QKYS--IGIHG 75 (180)
T ss_pred ECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHH-------HHHH--hhCCE
Confidence 69999999999999998763 23233343333333444544 457899999974322111 1111 36799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++.+....-.....++..+.+..+. ...|+++|.||+|+..
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 99998777532112223444455444332 2368999999999853
No 156
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.30 E-value=2.8e-11 Score=99.88 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.+..... . ..|..+......+++.++.++||||... .......++ .++|+++
T Consensus 25 lG~~~~GKStLi~~l~~~~~~~---~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~ad~ii 91 (190)
T cd00879 25 LGLDNAGKTTLLHMLKDDRLAQ---H-VPTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARRLWKDYF--PEVDGIV 91 (190)
T ss_pred ECCCCCCHHHHHHHHhcCCCcc---c-CCccCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--ccCCEEE
Confidence 6999999999999999876421 1 1234444556677889999999999632 111222222 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++..+.. +.. ....+..+.+.. .....|+++|+||+|+.
T Consensus 92 lV~D~~~~~s~~~-~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 92 FLVDAADPERFQE-SKEELDSLLSDE-ELANVPFLILGNKIDLP 133 (190)
T ss_pred EEEECCcHHHHHH-HHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence 997665321 221 222333332211 11237999999999984
No 157
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.30 E-value=3.4e-11 Score=94.60 Aligned_cols=111 Identities=19% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.. +..+..+..+..........++ ..+.+|||||..+..... ..+. ..++.
T Consensus 7 ~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~--~~~~~ 76 (161)
T TIGR00231 7 VGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR-------RLYY--RAVES 76 (161)
T ss_pred ECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH-------HHHH--hhhhE
Confidence 6999999999999999987 4555444455555544466777 678999999964322111 1111 13455
Q ss_pred EEEEEecCCc--CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~--r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++.++... .+..........+...... ..|+++|+||+|+.
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence 5555433221 1122222344444443322 37999999999985
No 158
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.30 E-value=2.3e-11 Score=99.49 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||++.+..... .. ..+ |...........+..+.+|||||.... ......++ .++|+++
T Consensus 19 ~G~~~~GKTsL~~~~~~~~~--~~-~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--~~ad~ii 85 (175)
T smart00177 19 VGLDAAGKTTILYKLKLGES--VT-TIP-TIGFNVETVTYKNISFTVWDVGGQDKI-------RPLWRHYY--TNTQGLI 85 (175)
T ss_pred EcCCCCCHHHHHHHHhcCCC--CC-cCC-ccccceEEEEECCEEEEEEECCCChhh-------HHHHHHHh--CCCCEEE
Confidence 69999999999999975442 12 222 222222344567788999999997321 11222222 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHH-HHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAI-TDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l-~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+++++.. +... .+.+..+ ...... ..|+++|+||+|+.
T Consensus 86 ~v~D~t~~~s~~~~-~~~l~~~~~~~~~~--~~piilv~NK~Dl~ 127 (175)
T smart00177 86 FVVDSNDRDRIDEA-REELHRMLNEDELR--DAVILVFANKQDLP 127 (175)
T ss_pred EEEECCCHHHHHHH-HHHHHHHhhCHhhc--CCcEEEEEeCcCcc
Confidence 998776422 3222 2233222 221112 27899999999984
No 159
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.30 E-value=2.1e-11 Score=100.44 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||++.+..... .. ..+ |...........+..+.+|||||.... ......++ .++|+++
T Consensus 23 vG~~~vGKTsli~~~~~~~~--~~-~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ad~iI 89 (182)
T PTZ00133 23 VGLDAAGKTTILYKLKLGEV--VT-TIP-TIGFNVETVEYKNLKFTMWDVGGQDKL-------RPLWRHYY--QNTNGLI 89 (182)
T ss_pred EcCCCCCHHHHHHHHhcCCc--cc-cCC-ccccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cCCCEEE
Confidence 69999999999999975543 12 222 222223345567889999999997321 11112222 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.++.. ++.....+.+.+..... ...|+++|+||.|+.
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDEL--RDAVLLVFANKQDLP 131 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCC
Confidence 998776422 33332222222222111 137899999999983
No 160
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.30 E-value=1.6e-11 Score=101.27 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++.+.+... ...+.++..........+++. .+.+|||+|.... ..+... .-.++|+
T Consensus 11 vGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~--------~~~~~~-~~~~ad~ 79 (182)
T cd04172 11 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------DNVRPL-SYPDSDA 79 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh--------Hhhhhh-hcCCCCE
Confidence 69999999999999998763 233333332222333445554 5789999997322 112211 1248899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+.+... . .|+++|+||+|+.
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 122 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhh
Confidence 99999887633 33323467777776543 2 7999999999984
No 161
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.30 E-value=2.1e-11 Score=94.68 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|.+.... ......+........... .+..+.++||||..+..... .. ..+.+|+
T Consensus 2 iG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~--~~~~~~~ 71 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RL--YYRGADG 71 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HH--HhcCCCE
Confidence 699999999999999998742 122222222222222222 26688999999985432111 11 1147899
Q ss_pred EEEEEecCCcCCCHHHHHHH--HHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQIT--RAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l--~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++... ...+.... ..+... .....|+++|+||+|+..
T Consensus 72 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 72 IILVYDVTDRE-SFENVKEWLLLILINK--EGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEECcCHH-HHHHHHHHHHHHHHhh--ccCCCcEEEEEecccccc
Confidence 99997766421 11111111 111222 223489999999999854
No 162
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.29 E-value=3.2e-11 Score=99.33 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|++.+... ....+..+......... ..+..+.+|||||.... ......++ .++|
T Consensus 9 vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d 77 (183)
T cd04152 9 LGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------RPLWKSYT--RCTD 77 (183)
T ss_pred ECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhH-------HHHHHHHh--ccCC
Confidence 69999999999999998763 22222112222222222 24578999999997321 11112222 4789
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++.++.. +.. -...+..+.+... ....|+++|+||+|+.
T Consensus 78 ~ii~v~D~~~~~~~~~-~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 78 GIVFVVDSVDVERMEE-AKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEEEECCCHHHHHH-HHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 999997765421 211 1223333433322 1237999999999984
No 163
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.29 E-value=6.7e-11 Score=101.60 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----cc------CC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-----VS------TF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-----~~------~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..|+|||||+++|+...... +. +. .+.|.........+++.++++|||||..+.. .+.
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~---~~~ 81 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI---AEV 81 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH---HHH
Confidence 5999999999999998643211 11 00 0112223344567789999999999996431 122
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+ ..+|++++|++... ........+++.+.+.. .|+++++||+|+.
T Consensus 82 ~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~-----~P~iivvNK~D~~ 129 (237)
T cd04168 82 ERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKLN-----IPTIIFVNKIDRA 129 (237)
T ss_pred HHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECcccc
Confidence 2222 26799999976654 35555666666665532 7899999999984
No 164
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.29 E-value=6.8e-11 Score=103.45 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc-----cccc------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|.+|+|||||+|+|+.... ..+. ...+.|........++++.+++++||||..+.
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df------- 77 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF------- 77 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH-------
Confidence 69999999999999974211 1111 01234444555677788999999999998542
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+..++ ..+|++++|++... .....+..+++.+.+.. +|+++++||+|+.
T Consensus 78 ~~~~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~ 129 (270)
T cd01886 78 TIEVERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRYN-----VPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 12222222 26799999966543 35666777777766543 7899999999984
No 165
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.28 E-value=4.3e-11 Score=101.71 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~-~~ 76 (265)
+|.+|||||||++++++.... ...+.++.. ........+. ...+.+|||||.. .... ..+ .. ++
T Consensus 6 vG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-------~~~~--~~~--~~~~a 73 (221)
T cd04148 6 LGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-------MWTE--DSC--MQYQG 73 (221)
T ss_pred ECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------hHHH--hHH--hhcCC
Confidence 699999999999999876532 122222211 2223334443 4578999999984 1111 111 13 78
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
|++++|+++++......-.+++..+.+... ....|+++|+||+|+.+.
T Consensus 74 d~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARS 121 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhcccc
Confidence 999999888763322222455665655421 123899999999998543
No 166
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.28 E-value=2.6e-11 Score=103.76 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
||.+|||||||++.+++... ...+.++..........+++. .+.||||+|.... ..+... .-.++|+
T Consensus 19 vGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~~-~~~~ad~ 87 (232)
T cd04174 19 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY--------DNVRPL-CYSDSDA 87 (232)
T ss_pred ECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh--------HHHHHH-HcCCCcE
Confidence 69999999999999998752 233333332223333445554 5789999996321 112211 1148999
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......|++.+.+... . .|+++|+||+|+.
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~ 130 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLR 130 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence 99999887633 32223467777776543 2 6899999999984
No 167
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.27 E-value=7.4e-11 Score=100.31 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
||.+|||||||++.+.+... ...+.++..........+++. .+.+|||+|.... ..+... .-+.+|+
T Consensus 7 vGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~--------~~l~~~-~~~~~d~ 75 (222)
T cd04173 7 VGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY--------DNVRPL-AYPDSDA 75 (222)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHH--------HHHhHH-hccCCCE
Confidence 69999999999999998763 233333433333334455554 5688999997321 111111 1258999
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++++... +......+...+.... ++ .|+++|+||+|+.
T Consensus 76 illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~ 118 (222)
T cd04173 76 VLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccc
Confidence 99999887633 3333334444444432 22 7999999999984
No 168
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.27 E-value=2.6e-11 Score=100.63 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++.+..... ...+.++..........+++. .+.+|||||..... .+... .-.++|+
T Consensus 9 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~--------~l~~~-~~~~a~~ 77 (191)
T cd01875 9 VGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD--------RLRTL-SYPQTNV 77 (191)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhh-hccCCCE
Confidence 69999999999999998653 222222222222222345554 57899999984321 12211 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +......+++.+.... + ..|+++|.||.|+.
T Consensus 78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~ 120 (191)
T cd01875 78 FIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLR 120 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhh
Confidence 99999887633 4333334556565433 2 27999999999984
No 169
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.27 E-value=5.2e-11 Score=104.68 Aligned_cols=116 Identities=24% Similarity=0.310 Sum_probs=87.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCC----cHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYV----NYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~----~~~~~~~i~~~l~~~~ 75 (265)
||-+++|||||+|++...+. .+.+++.||..|....... .+..+++-|.||+.++... ..+.+.+|.+|
T Consensus 165 VG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt----- 238 (369)
T COG0536 165 VGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT----- 238 (369)
T ss_pred ccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-----
Confidence 68999999999999999886 7889999999998877775 5567999999999987543 35888899866
Q ss_pred ccEEEEEEecCCcC--CCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r--~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~ 123 (265)
.++++|++++... -..++.+.+..-.+.++.. ..++.++|+||+|+.
T Consensus 239 -~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 239 -RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred -heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 7999997776432 1234444443333334332 458999999999963
No 170
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.27 E-value=6.8e-11 Score=95.84 Aligned_cols=108 Identities=15% Similarity=0.254 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|.+....... .|..........++..+.++||||... .......++ .++|+++
T Consensus 20 ~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~--~~~~~ii 86 (173)
T cd04155 20 LGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF--ENTDCLI 86 (173)
T ss_pred EccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--cCCCEEE
Confidence 699999999999999997542221 122222335566788999999999732 112222222 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++..... +......+...+..... ...|+++++||+|+.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 128 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLA 128 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCc
Confidence 997665422 22222222222222111 137999999999984
No 171
>PRK09866 hypothetical protein; Provisional
Probab=99.27 E-value=1.1e-10 Score=110.74 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=48.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++.++||||+...... ...+.+.+.+ ..+|+||||++... ..+..|..+++.+.+.. +. .|+++|+||+|..
T Consensus 231 QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~-K~--~PVILVVNKIDl~ 302 (741)
T PRK09866 231 QLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAVG-QS--VPLYVLVNKFDQQ 302 (741)
T ss_pred CEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhcC-CC--CCEEEEEEcccCC
Confidence 4789999999764322 1112222222 37899999965442 26778888888887642 11 4999999999985
No 172
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.27 E-value=1.2e-10 Score=95.80 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||++.+..... .. .. .|..........++..+.+|||||.. ........++ .++|+++
T Consensus 23 vG~~~~GKTsl~~~l~~~~~--~~-~~-pt~g~~~~~~~~~~~~~~i~D~~Gq~-------~~~~~~~~~~--~~a~~iI 89 (181)
T PLN00223 23 VGLDAAGKTTILYKLKLGEI--VT-TI-PTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYF--QNTQGLI 89 (181)
T ss_pred ECCCCCCHHHHHHHHccCCC--cc-cc-CCcceeEEEEEECCEEEEEEECCCCH-------HHHHHHHHHh--ccCCEEE
Confidence 69999999999999986543 12 12 22222233456678899999999962 1222222222 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~ 123 (265)
+|++.++.. +. ...+.+.+..... ...|+++|+||.|+.
T Consensus 90 ~V~D~s~~~s~~----~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 90 FVVDSNDRDRVV----EARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEeCCcHHHHH----HHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 997766421 22 2223333332211 137999999999984
No 173
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.5e-11 Score=98.40 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+-.+..... .....+............+++ .++.||||.|..........+ . +++++
T Consensus 11 LG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMY----y-----RgA~A 80 (200)
T KOG0092|consen 11 LGDSGVGKSSLVLRFVKDQF-HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMY----Y-----RGANA 80 (200)
T ss_pred ECCCCCCchhhhhhhhhCcc-ccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccce----e-----cCCcE
Confidence 69999999999999888763 221111122223333445555 566799999985433222211 1 48999
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
.|+|++++.......-+.+++.|++..+++ .-+.+|.||+|+...+...+++
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~e 132 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEE 132 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHH
Confidence 999999987554456688999999887654 4566799999997656655544
No 174
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.27 E-value=2.1e-11 Score=98.21 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|.|.... . ..| ....+.+. .+|||||+.... ......+... ..++|+++
T Consensus 7 iG~~~~GKstl~~~l~~~~~~--~---~~~-----~~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~--~~~ad~il 69 (158)
T PRK15467 7 VGAVGAGKTTLFNALQGNYTL--A---RKT-----QAVEFNDK--GDIDTPGEYFSH---PRWYHALITT--LQDVDMLI 69 (158)
T ss_pred ECCCCCCHHHHHHHHcCCCcc--C---ccc-----eEEEECCC--CcccCCccccCC---HHHHHHHHHH--HhcCCEEE
Confidence 699999999999999987521 1 111 12222222 269999985432 1222222211 24889999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.+... +..... +.+. +. .+|+++++||+|+.
T Consensus 70 ~v~d~~~~~-s~~~~~----~~~~-~~--~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 70 YVHGANDPE-SRLPAG----LLDI-GV--SKRQIAVISKTDMP 104 (158)
T ss_pred EEEeCCCcc-cccCHH----HHhc-cC--CCCeEEEEEccccC
Confidence 997776422 111111 1221 11 26899999999984
No 175
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.26 E-value=5.7e-11 Score=96.10 Aligned_cols=112 Identities=22% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++... .....+..+.........+++. .+.+|||||... .......++ ..+|+
T Consensus 11 vG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~--~~~d~ 80 (170)
T cd04116 11 LGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-------FRSLRTPFY--RGSDC 80 (170)
T ss_pred ECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-------HHHhHHHHh--cCCCE
Confidence 69999999999999998763 2111111122222233445554 568899999632 111222222 47899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +.. -..+...+...... ....|+++|+||+|+.
T Consensus 81 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 81 CLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99998888633 222 23455555544321 1236899999999985
No 176
>PLN03108 Rab family protein; Provisional
Probab=99.26 E-value=8.4e-11 Score=99.08 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|.|++....... .+..+.........+++. .+.+|||||... +......++ ..+|+
T Consensus 12 vG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~-------~~~~~~~~~--~~ad~ 81 (210)
T PLN03108 12 IGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYY--RGAAG 81 (210)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHh--ccCCE
Confidence 699999999999999987642221 111112222223445553 578999999632 111112222 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..++..+...... ..|+++|+||+|+..
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAH 125 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCcc
Confidence 99998776533122223455555554433 378999999999854
No 177
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.25 E-value=2e-10 Score=93.31 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc-cEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~-~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||++++++... .+..+.+++.. ........+| ..+.++||+|..........+ + .++|
T Consensus 10 vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~------~~~d 79 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE---L------AACD 79 (169)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh---h------hcCC
Confidence 69999999999999999874 21333333322 2223445566 467899999975443222211 1 3789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|+|+++++. .....+.+.+.. +......|+++|+||+|+.
T Consensus 80 ~~llv~d~~~~---~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 80 VACLVYDSSDP---KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEEEEeCCCH---HHHHHHHHHHHH-hccCCCCeEEEEEEccccc
Confidence 99999776542 111122222222 2111248999999999984
No 178
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.25 E-value=7.5e-11 Score=98.89 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=41.9
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
..+.+|||||.. .+...+...+ ..+|++++|++.+...........+..+.. .+. +|+++|+||+|+
T Consensus 83 ~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEchhc
Confidence 789999999952 2323322222 378999999776642123333444444432 221 579999999998
Q ss_pred C
Q 024586 123 S 123 (265)
Q Consensus 123 ~ 123 (265)
.
T Consensus 150 ~ 150 (203)
T cd01888 150 V 150 (203)
T ss_pred c
Confidence 4
No 179
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=4.1e-11 Score=101.73 Aligned_cols=109 Identities=10% Similarity=0.035 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+++++.... ...+.++. ..........+ ...+.+|||||....... ...++ .++|
T Consensus 19 vG~~gvGKTsli~~~~~~~f--~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~--~~~~ 87 (219)
T PLN03071 19 VGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-------RDGYY--IHGQ 87 (219)
T ss_pred ECcCCCCHHHHHHHHhhCCC--CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh-------hHHHc--cccc
Confidence 69999999999999887652 12222221 11112222222 357899999997543211 11111 3789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|+|++++.......-..+++.+.+... ..|+++|+||+|+.
T Consensus 88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 99999888763322233467777765532 27999999999984
No 180
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.24 E-value=6.5e-11 Score=99.88 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|.+++........ +..+.+........ ++ ..+.+|||||.... ......++ ..+|
T Consensus 8 vG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~d 77 (211)
T cd04111 8 IGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-------RSITRSYY--RNSV 77 (211)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-------HHHHHHHh--cCCc
Confidence 6999999999999999876422221 11112222222333 23 46889999996321 11112222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++++......-..+++.+.+..... ..++++|.||+|+..
T Consensus 78 ~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~ 123 (211)
T cd04111 78 GVLLVFDITNRESFEHVHDWLEEARSHIQPH-RPVFILVGHKCDLES 123 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEcccccc
Confidence 9999988875331122335666665554321 256889999999854
No 181
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.24 E-value=1.2e-10 Score=98.34 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---------CC---------CCCCCccEEEEeee-----CCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS---------TF---------QSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~---------~~---------~~~t~~~~~~~~~~-----~g~~v~iiDTPG~~~~~ 57 (265)
+|..|+|||||+++|++....... .+ .+.|.........+ ....+.+|||||..+..
T Consensus 6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~ 85 (213)
T cd04167 6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM 85 (213)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence 699999999999999975432110 00 01111111122222 23678999999986431
Q ss_pred CCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 58 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 58 ~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
......+. .+|++++|++... .....+..+++.+... + .|+++|+||+|+.
T Consensus 86 ---~~~~~~~~------~aD~~llVvD~~~-~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~ 136 (213)
T cd04167 86 ---DEVAAALR------LSDGVVLVVDVVE-GVTSNTERLIRHAILE---G--LPIVLVINKIDRL 136 (213)
T ss_pred ---HHHHHHHH------hCCEEEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence 12222222 7799999976653 2334444444444322 2 7899999999985
No 182
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.24 E-value=2.3e-11 Score=111.23 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=93.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIK-RFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~-~~l~~~~~d~i 79 (265)
+|-++|||||++|.+...++ .+.+++.||.....++..+.-..+.++||||+.+....+...+++.. ..+.+ =--+|
T Consensus 174 cG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH-LraaV 251 (620)
T KOG1490|consen 174 CGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH-LRSAV 251 (620)
T ss_pred ecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH-hhhhh
Confidence 58999999999999998876 78888888888877777777788999999999876544433333222 12211 12478
Q ss_pred EEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586 80 LYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 131 (265)
Q Consensus 80 L~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~ 131 (265)
||+++++... .+ .+..+++..|...|.+ +++|+|+||+|...+++.+.+
T Consensus 252 LYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~ 302 (620)
T KOG1490|consen 252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQK 302 (620)
T ss_pred eeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHH
Confidence 9998887533 33 4556888999999976 899999999999877765543
No 183
>PLN03126 Elongation factor Tu; Provisional
Probab=99.24 E-value=3e-10 Score=106.68 Aligned_cols=129 Identities=12% Similarity=0.016 Sum_probs=78.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc---------------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|++...... ....+.|.+......+.++..+++|||||.. ++..
T Consensus 87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~-------~f~~ 159 (478)
T PLN03126 87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA-------DYVK 159 (478)
T ss_pred ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH-------HHHH
Confidence 59999999999999996321110 0112233333334455678899999999973 3333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHH
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 145 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i 145 (265)
.+...+ ..+|++++|++.+. ......++.+..+... |. +++++++||+|+.+ .++..+...+.+++++
T Consensus 160 ~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~-----~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 160 NMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD-----DEELLELVELEVRELL 227 (478)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC-----HHHHHHHHHHHHHHHH
Confidence 443333 37899999976553 3556666666665544 21 34889999999853 1222222234566666
Q ss_pred hcc
Q 024586 146 SPS 148 (265)
Q Consensus 146 ~~~ 148 (265)
+..
T Consensus 228 ~~~ 230 (478)
T PLN03126 228 SSY 230 (478)
T ss_pred Hhc
Confidence 554
No 184
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.1e-10 Score=94.89 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|..+|||||||+.+.-... -..+.++ +.+.......+.|++ +.+|||.|... ....+-.+. +++.
T Consensus 28 lGdqsVGKTslItRf~yd~f--d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER-------FrslipsY~--Rds~ 96 (221)
T KOG0094|consen 28 LGDQSVGKTSLITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYI--RDSS 96 (221)
T ss_pred EccCccchHHHHHHHHHhhh--cccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH-------Hhhhhhhhc--cCCe
Confidence 69999999999999998763 2233322 333444455666764 58999999832 222233332 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
++++|+++.+........+|++.+.+..|.+- ..+++|.||.||.+.++.+.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eE 150 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEE 150 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHH
Confidence 99999999875555666789988888777631 5678899999998665555544
No 185
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.24 E-value=1.9e-10 Score=94.75 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||++++++... ...+.++. ..........++ ..+.+|||+|..... .....+ ..++|
T Consensus 6 lG~~~vGKTsLi~~~~~~~f--~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~~~~~~--~~~a~ 74 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI-------NMLPLV--CNDAV 74 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH-------HhhHHH--CcCCC
Confidence 69999999999999998763 22233222 122223445566 457899999974221 111111 25889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|+++++......-..+++.+.+..... .| ++|+||+|+.
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 9999988775322222235666665543322 44 6889999984
No 186
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.23 E-value=2.4e-10 Score=97.12 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeC----------CeEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------GFTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------g~~v~iiDTPG~~~ 55 (265)
+|..++|||||+++|+......... ..+.|.........+. +..+.+|||||..+
T Consensus 6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~ 85 (222)
T cd01885 6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVD 85 (222)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccc
Confidence 6899999999999998653211100 0112222222222232 66789999999864
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.. .+....+ ..+|++++|+++.. ......+..++...... .|+++|+||+|+.
T Consensus 86 f~---~~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~-----~p~ilviNKiD~~ 138 (222)
T cd01885 86 FS---SEVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKER-----VKPVLVINKIDRL 138 (222)
T ss_pred cH---HHHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCcc
Confidence 32 1222222 37899999977654 35555666666554432 6899999999974
No 187
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.23 E-value=8.9e-11 Score=96.95 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|.|..... .....++...........++. .+.++||||.......... ....+|+
T Consensus 7 vG~~g~GKStLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---------~~~~a~~ 75 (187)
T cd04129 7 VGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---------SYSKAHV 75 (187)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---------hcCCCCE
Confidence 69999999999999985542 122222222222333444554 4689999997543221110 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+.+.... .|+++|+||+|+.
T Consensus 76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~ 118 (187)
T cd04129 76 ILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR 118 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence 99998887643 333334567777665432 8999999999984
No 188
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.23 E-value=9.3e-11 Score=98.18 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
||..|||||||++++++... ...+.++. .........++ ...+.||||||...... ....++ .++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~-------l~~~~~--~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-------LRDGYY--IQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHh--cCCC
Confidence 79999999999999997652 22222221 12222233333 35789999999843221 111122 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|+++++......-..+++.+.+... ..|+++|+||+|+.
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 99999888763322223457777776542 27999999999984
No 189
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.22 E-value=2.2e-10 Score=100.10 Aligned_cols=108 Identities=15% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~--~~~~---------------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|.+|+|||||+|+|++..... .+.. ...|.........+++..+++|||||..+.
T Consensus 5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f------- 77 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF------- 77 (268)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH-------
Confidence 6999999999999998643211 1100 012223334556678899999999998431
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+..++ ..+|++++|++.+. ........+++.+... ..|.++|+||+|..
T Consensus 78 ~~~~~~~l--~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~ 129 (268)
T cd04170 78 VGETRAAL--RAADAALVVVSAQS-GVEVGTEKLWEFADEA-----GIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCccC
Confidence 12222222 27799999976654 2344445555554433 27899999999984
No 190
>PLN03127 Elongation factor Tu; Provisional
Probab=99.22 E-value=4.2e-10 Score=104.99 Aligned_cols=108 Identities=13% Similarity=0.030 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHhCC------Ccccc---------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGE------KAVTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~------~~~~~---------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|.+. ..... ....+.|........+.++.+++++||||+.+ +..
T Consensus 67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-------f~~ 139 (447)
T PLN03127 67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-------YVK 139 (447)
T ss_pred ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-------hHH
Confidence 589999999999999843 11000 01134555555566667788999999999842 233
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
.+...+ ..+|++++|++.+. .....+++.+..+.... .+ +|+|+||+|+.
T Consensus 140 ~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv 190 (447)
T PLN03127 140 NMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQVG-----VPSLVVFLNKVDVV 190 (447)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEEEeeccC
Confidence 333222 26899999976543 35677777777766543 55 67899999985
No 191
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.22 E-value=3e-10 Score=95.24 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCcc--EEEEeeeC-----C--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP--VMVSRSRA-----G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL 71 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~--~~~~~~~~-----g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l 71 (265)
+|.+|||||||++.+.+... .....+ |..+ ......+. + ..+.+|||+|.... ......++
T Consensus 6 vGd~gVGKTSLi~~~~~~~f--~~~~~~-Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-------~~l~~~~y 75 (202)
T cd04102 6 VGDSGVGKSSLVHLICKNQV--LGRPSW-TVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-------KSTRAVFY 75 (202)
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCc-ceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH-------HHHHHHHh
Confidence 69999999999999998763 222222 2221 11122221 2 36799999997322 11111122
Q ss_pred hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcC-----------------cCcCCcEEEEEeCccCCC
Q 024586 72 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-----------------EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 72 ~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g-----------------~~~~~~~ivV~tk~D~~~ 124 (265)
.++|++++|+++++....+.-..|++.+...-+ .....|+++|.||+|+.+
T Consensus 76 --r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 76 --NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred --CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 488999999998864322233467777755321 112379999999999954
No 192
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.21 E-value=2.4e-10 Score=95.90 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc-c
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI-D 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~-d 77 (265)
+|.+|+|||||++.|.+..... ..++++......... ..+..+.+|||||.... ......++. .. +
T Consensus 6 ~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~~~~~~~~--~~~~ 74 (203)
T cd04105 6 LGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------RDKLLETLK--NSAK 74 (203)
T ss_pred EcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHHH-------HHHHHHHHh--ccCC
Confidence 6999999999999999875321 122221111111111 23678999999997422 222222222 44 9
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcC----cCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g----~~~~~~~ivV~tk~D~~ 123 (265)
+++||++.... ...-....+.+...+. .....|+++|.||+|+.
T Consensus 75 ~vV~VvD~~~~--~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 75 GIVFVVDSATF--QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred EEEEEEECccc--hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 99999766542 1111222222222111 11238999999999985
No 193
>PRK12736 elongation factor Tu; Reviewed
Probab=99.21 E-value=4.2e-10 Score=103.65 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=95.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcc------ccc---------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV------TVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~------~~~---------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|++.... ... ...+.|..........++..++++||||.. ++..
T Consensus 18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~ 90 (394)
T PRK12736 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK 90 (394)
T ss_pred EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH-------HHHH
Confidence 589999999999999974210 000 022344444444445567889999999963 3333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 144 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 144 (265)
.+...+ ..+|++++|++.+. .....+.+.+..+... | .+ +|+|+||+|+.+ . ++..+...+.+.++
T Consensus 91 ~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~--~---~~~~~~i~~~i~~~ 157 (394)
T PRK12736 91 NMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLVD--D---EELLELVEMEVREL 157 (394)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcc--h---HHHHHHHHHHHHHH
Confidence 332222 37899999976653 3556677777766554 2 45 788999999842 1 11221112445555
Q ss_pred HhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHhhC
Q 024586 145 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVLN 202 (265)
Q Consensus 145 i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~~~ 202 (265)
+...+. .. ..+|++.+++. ++..+ ...| ++.|++.+.+.++.
T Consensus 158 l~~~~~-~~-----~~~~ii~vSa~----~g~~~------~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 158 LSEYDF-PG-----DDIPVIRGSAL----KALEG------DPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHhCC-Cc-----CCccEEEeecc----ccccC------CCcchhhHHHHHHHHHHhCCC
Confidence 543321 11 12455554432 22111 1246 57888888887763
No 194
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.21 E-value=3.7e-10 Score=98.64 Aligned_cols=108 Identities=10% Similarity=0.119 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccc--c-------------cCCC------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT--V-------------STFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~--~-------------~~~~------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|..|+|||||+|+|+...... . .++. +.+........++++.++++|||||..+..
T Consensus 8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~-- 85 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFS-- 85 (267)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHH--
Confidence 6999999999999998542111 0 1110 111123334667889999999999985321
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+....++ .+|++++|++... ........+++..... ..|+++++||+|+.
T Consensus 86 -~~~~~~l~------~aD~~IlVvda~~-g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~ 136 (267)
T cd04169 86 -EDTYRTLT------AVDSAVMVIDAAK-GVEPQTRKLFEVCRLR-----GIPIITFINKLDRE 136 (267)
T ss_pred -HHHHHHHH------HCCEEEEEEECCC-CccHHHHHHHHHHHhc-----CCCEEEEEECCccC
Confidence 12222222 7799999976653 3444445555544332 27899999999974
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.20 E-value=5.6e-10 Score=107.45 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~--~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+++|||||+|+|.|...... ....+.|..........++..+.+|||||.. .+...+.... .++|+
T Consensus 6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~--~~aD~ 76 (581)
T TIGR00475 6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG--GGIDA 76 (581)
T ss_pred ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--ccCCE
Confidence 59999999999999998642111 1122344444444566777899999999962 2333332222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++.+. .......+.+..+.. .|. +++++|+||+|+.
T Consensus 77 aILVVDa~~-G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 77 ALLVVDADE-GVMTQTGEHLAVLDL-LGI---PHTIVVITKADRV 116 (581)
T ss_pred EEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCC
Confidence 999977764 244455555554433 331 3499999999985
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.19 E-value=1.5e-10 Score=107.76 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc------------------------C------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS------------------------T------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~------------------------~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..++|||||+|+|++....... + ..+.|........+.++..+.+|||
T Consensus 12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDt 91 (425)
T PRK12317 12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDC 91 (425)
T ss_pred ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEEC
Confidence 699999999999999954321110 0 2456666666677788899999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||..+.. ..+...+ ..+|++++|++.+.. .+...+...+..+. ..+. +++++|+||+|+.
T Consensus 92 pG~~~~~---~~~~~~~------~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~Dl~ 152 (425)
T PRK12317 92 PGHRDFV---KNMITGA------SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMDAV 152 (425)
T ss_pred CCcccch---hhHhhch------hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEccccc
Confidence 9973211 1111111 378999999776541 23344444444443 3332 5799999999985
No 197
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.5e-10 Score=92.98 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=83.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||-|.-.+.+... ..+.......+......+++|. ++.||||.|.. .....+..+. +++|+
T Consensus 15 iGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE-------RFrtit~syY--R~ahG 84 (205)
T KOG0084|consen 15 IGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE-------RFRTITSSYY--RGAHG 84 (205)
T ss_pred ECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccH-------HHhhhhHhhc--cCCCe
Confidence 69999999999999998873 2222222234445556677776 46899999982 2222233322 58999
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 130 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~ 130 (265)
||+|++++..+....-..|++.+.+..+++ .+.++|.||+|+......+.
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~ 134 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVST 134 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCH
Confidence 999999987664455678999999988776 78999999999954333333
No 198
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.18 E-value=4.2e-10 Score=96.46 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCCCC--CCc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEEEE
Q 024586 44 TLNIVDTPGLIEGG--YVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIV 116 (265)
Q Consensus 44 ~v~iiDTPG~~~~~--~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~ivV 116 (265)
.+++|||||+.... ... +.+.+.+..++.. ..+++|+|++... .+...+ .++.+.+.... +++++|
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~-d~~~~d~l~ia~~ld~~~-----~rti~V 198 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANV-DLANSDALKLAKEVDPQG-----ERTIGV 198 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCC-CCCchhHHHHHHHHHHcC-----CcEEEE
Confidence 47999999997431 111 2233344445432 4468888865432 244445 46666665543 899999
Q ss_pred EeCccCCC
Q 024586 117 LTHAQLSL 124 (265)
Q Consensus 117 ~tk~D~~~ 124 (265)
+||+|...
T Consensus 199 iTK~D~~~ 206 (240)
T smart00053 199 ITKLDLMD 206 (240)
T ss_pred EECCCCCC
Confidence 99999863
No 199
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.18 E-value=1.2e-09 Score=87.85 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||++.+++... ..... ++.........++| ..+.+|||+|..+ .. .. ..+|+
T Consensus 6 vG~~gvGKTsli~~~~~~~f--~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~---~~------~~~~~ 68 (158)
T cd04103 6 VGNLQSGKSALVHRYLTGSY--VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQ---FA------SWVDA 68 (158)
T ss_pred ECCCCCcHHHHHHHHHhCCC--CCCCC-CCccceEEEEEECCEEEEEEEEECCCCCc-----hh---HH------hcCCE
Confidence 69999999999999887642 12222 22222234456677 4578999999842 11 11 36899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.. +... ..+++.+...... ...|+++|.||.|+.
T Consensus 69 ~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 69 VIFVFSLENEASFQTV-YNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 99999888644 3332 4577777665431 226899999999984
No 200
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.17 E-value=2e-10 Score=92.00 Aligned_cols=117 Identities=21% Similarity=0.164 Sum_probs=75.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|..|||||||++++.+... .....++. .+........++. .+.+|||+|.... ...... + ..++|
T Consensus 5 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~---~--~~~~~ 73 (162)
T PF00071_consen 5 VGDSGVGKTSLINRLINGEF--PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----DSLRDI---F--YRNSD 73 (162)
T ss_dssp EESTTSSHHHHHHHHHHSST--TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----HHHHHH---H--HTTES
T ss_pred ECCCCCCHHHHHHHHHhhcc--ccccccccccccccccccccccccccccccccccccc----cccccc---c--ccccc
Confidence 69999999999999998763 22222222 2333444555555 4799999996321 111111 1 14889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 130 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~ 130 (265)
++++|+++++...-..-..+++.+....+.. .|+++|.||.|+...+..+.
T Consensus 74 ~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~ 124 (162)
T PF00071_consen 74 AIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSV 124 (162)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCH
T ss_pred ccccccccccccccccccccccccccccccc--ccceeeeccccccccccchh
Confidence 9999999886442233347888888777632 79999999999864334333
No 201
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.17 E-value=2.7e-10 Score=112.22 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+++|||||+++|.+..+. .+...+.|.+...+...+++..+++|||||..+.. ....+.. ..+|+++
T Consensus 296 mGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------~m~~rga--~~aDiaI 365 (787)
T PRK05306 296 MGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-------AMRARGA--QVTDIVV 365 (787)
T ss_pred ECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch-------hHHHhhh--hhCCEEE
Confidence 699999999999999987653 33334455555556677788999999999985432 1112111 3679999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.++ .........+...... ..|+|||+||+|+.
T Consensus 366 LVVdAdd-Gv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~ 402 (787)
T PRK05306 366 LVVAADD-GVMPQTIEAINHAKAA-----GVPIIVAINKIDKP 402 (787)
T ss_pred EEEECCC-CCCHhHHHHHHHHHhc-----CCcEEEEEECcccc
Confidence 9987764 2444555555444332 27899999999984
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.17 E-value=3.2e-10 Score=96.22 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..|+|||||+.+|+...... ..+ ..+.|.........+++..+.++||
T Consensus 5 ~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDt 84 (219)
T cd01883 5 IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDA 84 (219)
T ss_pred ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEEC
Confidence 6999999999999997431100 000 1244555556677789999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc------CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY------RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~------r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||..+ ....+...+ ..+|++++|++.... .........+... ...+. +|+++|+||+|+.
T Consensus 85 pG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~Dl~ 150 (219)
T cd01883 85 PGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKMDDV 150 (219)
T ss_pred CChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEccccc
Confidence 99732 112222211 378999999766542 1112233333333 22321 6899999999985
No 203
>PRK12735 elongation factor Tu; Reviewed
Probab=99.17 E-value=9.8e-10 Score=101.29 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCC------Ccccc-c--------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGE------KAVTV-S--------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~------~~~~~-~--------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+|+|++. ..+.. . ...+.|........+.++.++.++||||.. ++..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~ 90 (396)
T PRK12735 18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-------DYVK 90 (396)
T ss_pred ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-------HHHH
Confidence 599999999999999972 10000 0 012334444344455667889999999972 3333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
.+...+ ..+|++++|++.+. .....+.+.+..+... | .+ +++|+||+|+.
T Consensus 91 ~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~ 141 (396)
T PRK12735 91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred HHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEecCCc
Confidence 333222 37899999976653 2555666666555433 2 45 45689999985
No 204
>PRK00049 elongation factor Tu; Reviewed
Probab=99.16 E-value=8.8e-10 Score=101.56 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=95.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcc------cc---------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV------TV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~------~~---------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|++.... .. ....+.|........+.++.++.++||||.. ++..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------~f~~ 90 (396)
T PRK00049 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK 90 (396)
T ss_pred EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-------HHHH
Confidence 589999999999999973110 00 0012344444444455577889999999973 3333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE-EEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQLSLPDRLDYEVFCSKRSEALLKF 144 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i-vV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 144 (265)
.+...+ ..+|++++|++.+. .....+...+..+.... .|.+ +++||+|+.+ ++ +..+.....+.++
T Consensus 91 ~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g-----~p~iiVvvNK~D~~~-~~----~~~~~~~~~i~~~ 157 (396)
T PRK00049 91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQVG-----VPYIVVFLNKCDMVD-DE----ELLELVEMEVREL 157 (396)
T ss_pred HHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHcC-----CCEEEEEEeecCCcc-hH----HHHHHHHHHHHHH
Confidence 333322 47899999976553 36677777777666542 5654 6899999852 11 1111112345555
Q ss_pred HhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHhh
Q 024586 145 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 201 (265)
Q Consensus 145 i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~~ 201 (265)
+...+ +.. ..+|++.+++.. +.. -.....| ++.|++.+.+.++
T Consensus 158 l~~~~-~~~-----~~~~iv~iSa~~----g~~----~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 158 LSKYD-FPG-----DDTPIIRGSALK----ALE----GDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHhcC-CCc-----cCCcEEEeeccc----ccC----CCCcccccccHHHHHHHHHhcCC
Confidence 54432 111 125555444321 110 0123457 4688888888664
No 205
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.16 E-value=1.2e-10 Score=91.49 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.+.... .. .|. ...+.+ .+|||||... ........+... .+++|+++
T Consensus 6 iG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~ad~vi 67 (142)
T TIGR02528 6 IGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADADVIA 67 (142)
T ss_pred ECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcCCEEE
Confidence 699999999999999988631 11 111 222222 6899999731 112222222221 25899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +..+..+++ ..+ +|+++|+||+|+.
T Consensus 68 lv~d~~~~~-s~~~~~~~~----~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 68 LVQSATDPE-SRFPPGFAS----IFV----KPVIGLVTKIDLA 101 (142)
T ss_pred EEecCCCCC-cCCChhHHH----hcc----CCeEEEEEeeccC
Confidence 998776432 112222322 222 5899999999985
No 206
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.16 E-value=1.1e-09 Score=100.82 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCC------Cccc---c------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGE------KAVT---V------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~------~~~~---~------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|++. ..+. . ....+.|........+.++.++++|||||.. ++..
T Consensus 18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~-------~f~~ 90 (394)
T TIGR00485 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------DYVK 90 (394)
T ss_pred EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH-------HHHH
Confidence 588999999999999853 1110 0 0113455555445555667889999999973 2222
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+...+ ..+|++++|++.+. .....+.+.+..+... +. +++++|+||+|+.
T Consensus 91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 91 NMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMV 141 (394)
T ss_pred HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence 332222 37899999976653 2556666677666544 21 3455789999985
No 207
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=102.01 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~~ 76 (265)
||.+++|||||+|.|+|.+. .+++++.+|..+.....+++|.++.++|+||+.++.... .+.+..++ .+
T Consensus 69 VGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R------~A 141 (365)
T COG1163 69 VGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR------NA 141 (365)
T ss_pred EcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec------cC
Confidence 69999999999999999885 788899999999999999999999999999998865433 23444443 67
Q ss_pred cEEEEEEecC
Q 024586 77 DVLLYVDRLD 86 (265)
Q Consensus 77 d~iL~V~~~d 86 (265)
|++++|.++.
T Consensus 142 DlIiiVld~~ 151 (365)
T COG1163 142 DLIIIVLDVF 151 (365)
T ss_pred CEEEEEEecC
Confidence 8888885544
No 208
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.15 E-value=1.9e-09 Score=104.27 Aligned_cols=109 Identities=19% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--cCCCCCCCccEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~--~~~~~~t~~~~~~~~-~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|..++|||||+|+|.|.+.... ....+.|........ ..++..+.+|||||.. .+...+...+ .++|
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~--~~~D 76 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV--GGID 76 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh--hcCC
Confidence 59999999999999998642111 111233332222222 2257789999999972 2333333222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++.+. .....+.+.+..+.. .|. +++++|+||+|+.
T Consensus 77 ~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv 117 (614)
T PRK10512 77 HALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV 117 (614)
T ss_pred EEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence 9999977664 356677777765544 331 4568999999985
No 209
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=94.90 Aligned_cols=120 Identities=22% Similarity=0.202 Sum_probs=83.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||+|...+++.. ++..+.++..........++|. .+.|+||+|..+.... +. +.....|+
T Consensus 9 lG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~--------~~-~~~~~~~g 77 (196)
T KOG0395|consen 9 LGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAM--------RD-LYIRNGDG 77 (196)
T ss_pred ECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHH--------HH-HhhccCcE
Confidence 6999999999999999987 4555666655555566666665 4689999995333211 11 12236799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
+++|+++++....+....+.+.|.+..+.. +.|+++|+||+|+...+..+.++
T Consensus 78 F~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 78 FLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHH
Confidence 999999997544455566777775555543 27999999999996545555544
No 210
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.13 E-value=1.9e-09 Score=103.81 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=72.7
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|+........ ...+.|.........+++..+++|||||..+. ..
T Consensus 7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF-------~~ 79 (594)
T TIGR01394 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF-------GG 79 (594)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-------HH
Confidence 689999999999999964211100 01134444455667888999999999998542 22
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+.+++ ..+|++++|++... ........++..+.... .|.++|+||+|+.
T Consensus 80 ev~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~-----ip~IVviNKiD~~ 129 (594)
T TIGR01394 80 EVERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALELG-----LKPIVVINKIDRP 129 (594)
T ss_pred HHHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCC-----CCEEEEEECCCCC
Confidence 333333 27799999976653 34556666776665532 7889999999984
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.12 E-value=1.7e-09 Score=104.24 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|..++|||||+++|++........ ..+.|.........+++..+++|||||..+... .
T Consensus 11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~---~--- 84 (607)
T PRK10218 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG---E--- 84 (607)
T ss_pred ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH---H---
Confidence 5999999999999999743211111 112233333445667889999999999865321 2
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+..++ ..+|++++|++... .........+..+.... .|.++|+||+|..
T Consensus 85 -v~~~l--~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~g-----ip~IVviNKiD~~ 133 (607)
T PRK10218 85 -VERVM--SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYG-----LKPIVVINKVDRP 133 (607)
T ss_pred -HHHHH--HhCCEEEEEEeccc-CccHHHHHHHHHHHHcC-----CCEEEEEECcCCC
Confidence 22222 37899999976653 34555666666555432 7889999999984
No 212
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.12 E-value=6.6e-10 Score=106.76 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=70.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+++|||||+|+|.+..+.. ....+.|.+...+...+++. .+++|||||..+.. ....+. ...+|++
T Consensus 93 ~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-------~~r~rg--a~~aDia 162 (587)
T TIGR00487 93 MGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-------SMRARG--AKVTDIV 162 (587)
T ss_pred ECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh-------hHHHhh--hccCCEE
Confidence 6999999999999999976532 33344555544455556444 89999999975322 111111 2478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+. .........+...... ..|+++++||+|+.
T Consensus 163 ILVVda~d-gv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~ 200 (587)
T TIGR00487 163 VLVVAADD-GVMPQTIEAISHAKAA-----NVPIIVAINKIDKP 200 (587)
T ss_pred EEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 99987664 2334444444433322 27899999999984
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.12 E-value=1.5e-09 Score=92.49 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=52.6
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEe
Q 024586 39 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118 (265)
Q Consensus 39 ~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~t 118 (265)
+..+..++++||||.. .+...+.+.+....+|++++|++.+. .....+..++..+.... .|+++|+|
T Consensus 80 ~~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~-----ip~ivvvN 146 (224)
T cd04165 80 EKSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALN-----IPVFVVVT 146 (224)
T ss_pred eeCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEE
Confidence 4557889999999973 33334443443346899999976653 46788888888877654 78999999
Q ss_pred CccCC
Q 024586 119 HAQLS 123 (265)
Q Consensus 119 k~D~~ 123 (265)
|+|+.
T Consensus 147 K~D~~ 151 (224)
T cd04165 147 KIDLA 151 (224)
T ss_pred Ccccc
Confidence 99985
No 214
>PLN00023 GTP-binding protein; Provisional
Probab=99.10 E-value=7.9e-10 Score=98.14 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC---------------CeEEEEEeCCCCCCCCCCcHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA---------------GFTLNIVDTPGLIEGGYVNYHAI 64 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~---------------g~~v~iiDTPG~~~~~~~~~~~~ 64 (265)
+|.+|||||||++.+.+... .....++. .........++ ...+.||||+|.....
T Consensus 27 LGdsGVGKTSLI~rf~~g~F--~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr------- 97 (334)
T PLN00023 27 VGDSGVGKSSLVHLIVKGSS--IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK------- 97 (334)
T ss_pred ECCCCCcHHHHHHHHhcCCc--ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh-------
Confidence 69999999999999998763 22222221 11112222332 2458999999974321
Q ss_pred HHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCc----------CcCCcEEEEEeCccCCC
Q 024586 65 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE----------QIWKRALIVLTHAQLSL 124 (265)
Q Consensus 65 ~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~----------~~~~~~ivV~tk~D~~~ 124 (265)
.....++ .++|++|+|++++.......-..+++.+....+. ....++++|.||+|+..
T Consensus 98 sL~~~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 1111122 4899999999888644233345677777765321 11268999999999954
No 215
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.4e-09 Score=88.29 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=81.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||+++-.+..... ..+....-.........+.+|.. +.+|||.|... .......+. ++++.
T Consensus 18 iGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti~~sYy--rgA~g 87 (207)
T KOG0078|consen 18 IGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTITTAYY--RGAMG 87 (207)
T ss_pred ECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHHHHHHH--hhcCe
Confidence 69999999999999887753 22222112233444456667764 58999999843 223333333 48999
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|+++......+....|++.+.+.-.+. .+.++|.||+|+...+..+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~ 136 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVS 136 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeecccccccccccc
Confidence 999999987665555667999999987665 7899999999996544433
No 216
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.08 E-value=4.7e-10 Score=98.03 Aligned_cols=81 Identities=25% Similarity=0.316 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~iiDTPG~~~~~~~~~~~ 63 (265)
||.++||||||+|+|++.+. .+++++++|..+......+.+. ++.++||||+..+....+.
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~g- 81 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG- 81 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhH-
Confidence 69999999999999999987 7888899998888777666553 4899999999875443321
Q ss_pred HHHHHHHHhc-CCccEEEEEEec
Q 024586 64 IQLIKRFLLN-KTIDVLLYVDRL 85 (265)
Q Consensus 64 ~~~i~~~l~~-~~~d~iL~V~~~ 85 (265)
...+++.. ..+|++++|++.
T Consensus 82 --lg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 82 --LGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred --HHHHHHHHHHhCCEEEEEEeC
Confidence 11223322 478999999765
No 217
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.08 E-value=1.9e-09 Score=105.91 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..++|||||+|+|++..... +.+ ..+.|........++++.++++|||||+.+.. .+.
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~---~~~ 92 (689)
T TIGR00484 16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT---VEV 92 (689)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh---HHH
Confidence 6999999999999998532111 111 12344555566778899999999999996532 122
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...++ .+|++++|++... .....+..++..+.+.. .|+++|+||+|+.
T Consensus 93 ~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~ 140 (689)
T TIGR00484 93 ERSLR------VLDGAVAVLDAVG-GVQPQSETVWRQANRYE-----VPRIAFVNKMDKT 140 (689)
T ss_pred HHHHH------HhCEEEEEEeCCC-CCChhHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 22222 6799999976553 35566667777665542 7899999999985
No 218
>PRK12739 elongation factor G; Reviewed
Probab=99.07 E-value=1.6e-09 Score=106.49 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCCCCCHHHHHHHHhCCCc-----ccccC------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-----VTVST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-----~~~~~------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..++|||||+|+|+.... ..+.. ..+.|........++++.+++++||||+.+ .
T Consensus 14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-------f 86 (691)
T PRK12739 14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD-------F 86 (691)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-------H
Confidence 69999999999999985321 11111 234555666667788999999999999843 1
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..++.+.+ ..+|++++|++... .....+..++..+.+.. +|.|+++||+|+.
T Consensus 87 ~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~ 138 (691)
T PRK12739 87 TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKYG-----VPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 12233322 26799999966543 36777778887776543 7889999999985
No 219
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.07 E-value=1.6e-09 Score=105.97 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~----~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|+|||||+++|.+..... +...+.|.....+...+ .+..+++|||||.. .+.....+.+ ..+
T Consensus 250 vGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-------~F~~mr~rg~--~~a 319 (742)
T CHL00189 250 LGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-------AFSSMRSRGA--NVT 319 (742)
T ss_pred ECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHH-------HHHHHHHHHH--HHC
Confidence 6999999999999999876532 22233343333333333 35889999999973 2222222222 378
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|++++|++.+. .......+.+..+... ..|+|+|+||+|+.
T Consensus 320 DiaILVVDA~d-Gv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~ 360 (742)
T CHL00189 320 DIAILIIAADD-GVKPQTIEAINYIQAA-----NVPIIVAINKIDKA 360 (742)
T ss_pred CEEEEEEECcC-CCChhhHHHHHHHHhc-----CceEEEEEECCCcc
Confidence 99999987664 3444445555544332 27999999999984
No 220
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.05 E-value=2.4e-09 Score=83.38 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=77.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i-~~~l~~~~~d 77 (265)
+|.+|+|||||+-.+..... ..+-....+.+.......++|. ++.||||.|. +.+..| ..+. .+.|
T Consensus 14 igDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrtitstyy--rgth 82 (198)
T KOG0079|consen 14 IGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTITSTYY--RGTH 82 (198)
T ss_pred ecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEEEeecCCcEEEEEEeecccH--------HHHHHHHHHHc--cCCc
Confidence 68999999999988776642 2222222233444455566665 5689999997 333333 3333 4889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++........-..|++.+...+.. .+-++|.||.|+..
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPE 126 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCcc
Confidence 999999998766556778999999987764 67899999999853
No 221
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.04 E-value=2.9e-09 Score=89.68 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEE-EeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV-SRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~-~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|..|||||||+|+|.+........ ++....... ..... ...+.+|||+|..+. ......+. .+++
T Consensus 11 ~G~~g~GKTtl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------~~~~~~y~--~~~~ 79 (219)
T COG1100 11 LGDGGVGKTTLLNRLVGDEFPEGYP--PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------RSLRPEYY--RGAN 79 (219)
T ss_pred EcCCCccHHHHHHHHhcCcCcccCC--CceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------HHHHHHHh--cCCC
Confidence 5999999999999999987532222 121111111 11112 456899999998422 12222221 4889
Q ss_pred EEEEEEecCC-cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~-~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++... .++...-..+.+.+....+.. .++++|.||+|+.
T Consensus 80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~ 124 (219)
T COG1100 80 GILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLF 124 (219)
T ss_pred EEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccc
Confidence 9999977665 446666677777777766432 7999999999995
No 222
>PRK00007 elongation factor G; Reviewed
Probab=99.04 E-value=2.7e-09 Score=104.93 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=75.0
Q ss_pred CCCCCCCHHHHHHHHhC---CCc--cccc------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIG---EKA--VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg---~~~--~~~~------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..++|||||+|+|+. ... ..+. ...+.|.........+.+..++++||||+.+.
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f------- 88 (693)
T PRK00007 16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF------- 88 (693)
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-------
Confidence 69999999999999983 211 0111 12234555555677888999999999997431
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..++.+.+ ..+|++++|++... .....+..++..+.+.. +|.++++||+|+.
T Consensus 89 ~~ev~~al--~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~ 140 (693)
T PRK00007 89 TIEVERSL--RVLDGAVAVFDAVG-GVEPQSETVWRQADKYK-----VPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHH--HHcCEEEEEEECCC-CcchhhHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 11222222 36799999966442 36778888888777654 7889999999985
No 223
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=1e-09 Score=86.56 Aligned_cols=121 Identities=16% Similarity=0.057 Sum_probs=77.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
||.+|||||||+-++.....-...+. ....+.......++|. ++.||||.|..........+ . +++..
T Consensus 17 IGeSGVGKSSLllrFv~~~fd~~~~~-tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy-------y--RgaqG 86 (209)
T KOG0080|consen 17 IGESGVGKSSLLLRFVSNTFDDLHPT-TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY-------Y--RGAQG 86 (209)
T ss_pred EccCCccHHHHHHHHHhcccCccCCc-eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH-------h--ccCce
Confidence 69999999999999988754222211 1123444556667765 56899999985443322211 1 48899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF 133 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~ 133 (265)
+++|+++.... |... ..|++++.-..... ..-.++|.||.|....+..+.++-
T Consensus 87 iIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG 140 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKL-DIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEG 140 (209)
T ss_pred eEEEEEccchhhHHhH-HHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHH
Confidence 99999988633 5555 46777776654431 133578999999754444444443
No 224
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.03 E-value=6.6e-10 Score=87.39 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=56.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
||++|+|||||+++|.|.+. .+ .-|. ...+.+ .+|||||=+- .+..+...+-. .+..+|+|+
T Consensus 7 iG~~g~GKTTL~q~L~~~~~----~~-~KTq-----~i~~~~---~~IDTPGEyi---E~~~~y~aLi~--ta~dad~V~ 68 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNGEEI----RY-KKTQ-----AIEYYD---NTIDTPGEYI---ENPRFYHALIV--TAQDADVVL 68 (143)
T ss_pred ECCCCCCHHHHHHHHcCCCC----Cc-Cccc-----eeEecc---cEEECChhhe---eCHHHHHHHHH--HHhhCCEEE
Confidence 69999999999999999763 11 1121 222222 2699999431 11222222211 224889999
Q ss_pred EEEecCCcC--CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r--~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|.+.+... +... +...| .+|+|-|+||+|+.
T Consensus 69 ll~dat~~~~~~pP~-------fa~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 69 LLQDATEPRSVFPPG-------FASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred EEecCCCCCccCCch-------hhccc----CCCEEEEEECccCc
Confidence 996665422 2222 22333 38999999999995
No 225
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.1e-09 Score=90.07 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||-|+-.+...+....+ ......+.......++|+. ..||||.|..... .+.... -+++..
T Consensus 20 iGDS~VGKsnLlsRftrnEF~~~S-ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr--------AitSaY-YrgAvG 89 (222)
T KOG0087|consen 20 IGDSAVGKSNLLSRFTRNEFSLES-KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR--------AITSAY-YRGAVG 89 (222)
T ss_pred eCCCccchhHHHHHhcccccCccc-ccceeEEEEeeceeecCcEEEEeeecccchhhhc--------cccchh-hcccce
Confidence 699999999999988876642222 2222334444556677765 4899999984322 221111 048899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 130 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~ 130 (265)
.|+|+++....-.+.-..|+++|.....++ ..+++|.||+||...+....
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~t 139 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPT 139 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccch
Confidence 999999875333346678999999988765 78999999999975544443
No 226
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.01 E-value=2.3e-09 Score=97.27 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---CCCccEE---EEeeeC-----CeEEEEEeCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGE----KAV-----------TVSTFQS---EGPRPVM---VSRSRA-----GFTLNIVDTPGLI 54 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~----~~~-----------~~~~~~~---~t~~~~~---~~~~~~-----g~~v~iiDTPG~~ 54 (265)
+|+.++|||||||++.+. +.. .+++.++ +|++|.. ...++. ..+++++||+|+.
T Consensus 23 vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~ 102 (492)
T TIGR02836 23 VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYT 102 (492)
T ss_pred EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcc
Confidence 699999999999999998 554 4555666 6777766 333321 2478999999998
Q ss_pred CCCCCcH----H-----------------HHHH-HHHHHhcCCccEEEEEE-ecC-----CcCCCHHHHHHHHHHHHhcC
Q 024586 55 EGGYVNY----H-----------------AIQL-IKRFLLNKTIDVLLYVD-RLD-----VYRVDNLDKQITRAITDNFG 106 (265)
Q Consensus 55 ~~~~~~~----~-----------------~~~~-i~~~l~~~~~d~iL~V~-~~d-----~~r~~~~d~~~l~~l~~~~g 106 (265)
+.+.... . +.+. .++.+ ...+|..|+|. +.+ .....+.+..+++.|++..
T Consensus 103 v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI-~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~- 180 (492)
T TIGR02836 103 VKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI-QEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN- 180 (492)
T ss_pred cCCCccceeccccccccCCcccccCchhhhhhhhHHHHH-HhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC-
Confidence 7653221 1 0000 11111 13678888884 221 1236677888999998876
Q ss_pred cCcCCcEEEEEeCccC
Q 024586 107 EQIWKRALIVLTHAQL 122 (265)
Q Consensus 107 ~~~~~~~ivV~tk~D~ 122 (265)
+|+++|+|+.|-
T Consensus 181 ----kPfiivlN~~dp 192 (492)
T TIGR02836 181 ----KPFIILLNSTHP 192 (492)
T ss_pred ----CCEEEEEECcCC
Confidence 999999999994
No 227
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.01 E-value=2.5e-09 Score=102.66 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee------------------CCeEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|.+++|||||+|+|.+..+.. ....+.|.+........ ....+.+|||||....
T Consensus 10 iG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f------ 82 (590)
T TIGR00491 10 LGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF------ 82 (590)
T ss_pred ECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH------
Confidence 6999999999999999986422 11111222111111110 1124889999997322
Q ss_pred HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
......+. ..+|++++|++++. .....+...+..+... ..|+++|+||+|+.
T Consensus 83 -~~l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 83 -TNLRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI 134 (590)
T ss_pred -HHHHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 11112121 37899999987764 3455566666655433 27899999999985
No 228
>PTZ00258 GTP-binding protein; Provisional
Probab=99.00 E-value=1.5e-09 Score=99.08 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCcH--
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVNY-- 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~~-- 61 (265)
||.+|||||||+|+|.+..+ .+++++++|..+......+.+ .++.++||||+..+....+
T Consensus 27 VG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL 105 (390)
T PTZ00258 27 VGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL 105 (390)
T ss_pred ECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence 69999999999999998875 888899999888877766543 2489999999986543322
Q ss_pred --HHHHHHHHHHhcCCccEEEEEEec
Q 024586 62 --HAIQLIKRFLLNKTIDVLLYVDRL 85 (265)
Q Consensus 62 --~~~~~i~~~l~~~~~d~iL~V~~~ 85 (265)
..+..+ ..+|++++|++.
T Consensus 106 g~~fL~~I------r~aD~il~VVd~ 125 (390)
T PTZ00258 106 GNAFLSHI------RAVDGIYHVVRA 125 (390)
T ss_pred HHHHHHHH------HHCCEEEEEEeC
Confidence 233333 378999999775
No 229
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=6.8e-09 Score=83.97 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=76.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||.|+-.+.......+.+ ..-..+--....+++++ ++.||||.|.. ...+..+.+. +++-.
T Consensus 12 iGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe-------~frsv~~syY--r~a~G 81 (216)
T KOG0098|consen 12 IGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQE-------SFRSVTRSYY--RGAAG 81 (216)
T ss_pred ECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcH-------HHHHHHHHHh--ccCcc
Confidence 6999999999999999987422221 00111222234455665 56999999982 2233333343 36778
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 131 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~ 131 (265)
.|+|++++.......-..+|..+.+...++ .-++++.||+|+...++.+-+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~E 132 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKE 132 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHH
Confidence 899999986443334456777777765444 568899999999655554443
No 230
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=1.7e-09 Score=97.63 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~iiDTPG~~~~~~~~~~~ 63 (265)
||.++||||||+|+|++.. +.+++++.+|..+......+.+. ++.++||||+..+....+.
T Consensus 8 VG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~g- 85 (364)
T PRK09601 8 VGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG- 85 (364)
T ss_pred ECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHH-
Confidence 6999999999999999998 48888899998888766665542 5899999999875443321
Q ss_pred HHHHHHHHhc-CCccEEEEEEec
Q 024586 64 IQLIKRFLLN-KTIDVLLYVDRL 85 (265)
Q Consensus 64 ~~~i~~~l~~-~~~d~iL~V~~~ 85 (265)
.-.+++.. ..+|++++|++.
T Consensus 86 --lg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 86 --LGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred --HHHHHHHHHHhCCEEEEEEeC
Confidence 11223322 488999999775
No 231
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.00 E-value=1.5e-09 Score=88.96 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|..|+||||+++.|.......+ ..|.........+++..+.++|.+|-.......+. ++ .++|+++
T Consensus 20 lGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~-------y~--~~~~~iI 86 (175)
T PF00025_consen 20 LGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKS-------YF--QNADGII 86 (175)
T ss_dssp EESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGG-------GH--TTESEEE
T ss_pred ECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEecccccccccccee-------ec--cccceeE
Confidence 58999999999999998653221 12344445667788999999999986322212221 11 3789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~ 123 (265)
||++..+.. .-.+..+.+.+..... ...|+++++||.|+.
T Consensus 87 fVvDssd~~---~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 87 FVVDSSDPE---RLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp EEEETTGGG---GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred EEEecccce---eecccccchhhhcchhhcccceEEEEecccccc
Confidence 997655422 1122333333433321 248999999999983
No 232
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.99 E-value=8.4e-09 Score=98.13 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK--AVTVSTFQ-------------------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|..|+|||||+++|+-.. ....+... +.|.........+++..++++||||..+.
T Consensus 17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df--- 93 (527)
T TIGR00503 17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDF--- 93 (527)
T ss_pred EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhH---
Confidence 6999999999999986321 11111100 11122233456778999999999998432
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+.+++ ..+|++|+|++... .+......+++..... ..|+++++||+|+.
T Consensus 94 ----~~~~~~~l--~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~ 145 (527)
T TIGR00503 94 ----SEDTYRTL--TAVDNCLMVIDAAK-GVETRTRKLMEVTRLR-----DTPIFTFMNKLDRD 145 (527)
T ss_pred ----HHHHHHHH--HhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 12222222 27899999976553 3555556666544432 27999999999984
No 233
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.98 E-value=1.8e-09 Score=105.18 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC----------CC----------------------CCCCccEEEEeeeCCeEEEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST----------FQ----------------------SEGPRPVMVSRSRAGFTLNIV 48 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~----------~~----------------------~~t~~~~~~~~~~~g~~v~ii 48 (265)
+|..++|||||+|+|+.......+. .. +.|........+.++.++.++
T Consensus 30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~li 109 (632)
T PRK05506 30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVA 109 (632)
T ss_pred ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEE
Confidence 6999999999999999764322210 11 122233334556678899999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||||.. ++...+...+ ..+|++++|++.+. .....+...+..+... +. +++++|+||+|+.
T Consensus 110 DtPG~~-------~f~~~~~~~~--~~aD~~llVvda~~-g~~~~t~e~~~~~~~~-~~---~~iivvvNK~D~~ 170 (632)
T PRK05506 110 DTPGHE-------QYTRNMVTGA--STADLAIILVDARK-GVLTQTRRHSFIASLL-GI---RHVVLAVNKMDLV 170 (632)
T ss_pred ECCChH-------HHHHHHHHHH--HhCCEEEEEEECCC-CccccCHHHHHHHHHh-CC---CeEEEEEEecccc
Confidence 999963 2222222222 47899999976653 2444444444444333 32 6789999999985
No 234
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.98 E-value=8.6e-09 Score=99.46 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc-----CC---------CCCCCccEEEEeee---CC--eEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS-----TF---------QSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~-----~~---------~~~t~~~~~~~~~~---~g--~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..++|||||+++|+........ .+ .+.|.........+ ++ ..+++|||||..+.
T Consensus 9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF----- 83 (595)
T TIGR01393 9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF----- 83 (595)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-----
Confidence 699999999999999975321110 00 12233322233333 23 57899999999643
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+.+++ ..+|++++|++.+. ..+..+...+....+. ..++++|+||+|+.
T Consensus 84 --~~~v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 --SYEVSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALEN-----DLEIIPVINKIDLP 135 (595)
T ss_pred --HHHHHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 22233333 27799999976653 2344443333322221 26899999999984
No 235
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.98 E-value=4.5e-09 Score=87.63 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHH-HHhCCCcc---cccCCCCCCC--ccEEEE--------eeeCC--eEEEEEeCCCCCCCCCCcHHHH
Q 024586 1 MGKGGVGKSSTVN-SIIGEKAV---TVSTFQSEGP--RPVMVS--------RSRAG--FTLNIVDTPGLIEGGYVNYHAI 64 (265)
Q Consensus 1 vG~tg~GKSSliN-~llg~~~~---~~~~~~~~t~--~~~~~~--------~~~~g--~~v~iiDTPG~~~~~~~~~~~~ 64 (265)
+|.+|||||||++ .+.+.... ....+.++.. ...... ..++| ..+.+|||+|..+.
T Consensus 8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-------- 79 (195)
T cd01873 8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-------- 79 (195)
T ss_pred ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--------
Confidence 6999999999996 45443210 1122222221 111111 13444 36789999998431
Q ss_pred HHHHHHHhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 65 QLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 65 ~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++. +.-+++|++++|+++++.. +......+++.+.+... . .|+++|.||+|+.
T Consensus 80 --~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLR 133 (195)
T ss_pred --hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcc
Confidence 011 1225899999999887633 33333346777766542 2 6899999999984
No 236
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.98 E-value=1e-08 Score=87.38 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|++... ...+...+ +. ......+.++.++||||.. ...++.++ .+|++
T Consensus 45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g----~i-~i~~~~~~~i~~vDtPg~~------~~~l~~ak------~aDvV 107 (225)
T cd01882 45 VGPPGVGKTTLIKSLVKNYTKQNISDIKG----PI-TVVTGKKRRLTFIECPNDI------NAMIDIAK------VADLV 107 (225)
T ss_pred ECCCCCCHHHHHHHHHhhcccCccccccc----cE-EEEecCCceEEEEeCCchH------HHHHHHHH------hcCEE
Confidence 59999999999999998632 11111111 11 1122367889999999852 23333333 67999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
++|++... .+...+..++..+.... .| +++|+||+|+.
T Consensus 108 llviDa~~-~~~~~~~~i~~~l~~~g-----~p~vi~VvnK~D~~ 146 (225)
T cd01882 108 LLLIDASF-GFEMETFEFLNILQVHG-----FPRVMGVLTHLDLF 146 (225)
T ss_pred EEEEecCc-CCCHHHHHHHHHHHHcC-----CCeEEEEEeccccC
Confidence 99966542 36666777777766532 45 45599999985
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.95 E-value=6.1e-09 Score=96.33 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc--------------------------C------CCCCCCccEEEEeeeCCeEEEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS--------------------------T------FQSEGPRPVMVSRSRAGFTLNIV 48 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~--------------------------~------~~~~t~~~~~~~~~~~g~~v~ii 48 (265)
+|..++|||||+++|+........ + ..+.|.+......+.++.++.++
T Consensus 6 vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~li 85 (406)
T TIGR02034 6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA 85 (406)
T ss_pred ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEE
Confidence 699999999999999854321100 0 01233444445566788899999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||||.. ++...+...+ ..+|++|+|++... .+...+.+.+..+.. .+. +++++|+||+|+.
T Consensus 86 DtPGh~-------~f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~~-~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 86 DTPGHE-------QYTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIASL-LGI---RHVVLAVNKMDLV 146 (406)
T ss_pred eCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHHH-cCC---CcEEEEEEecccc
Confidence 999963 2333333222 37899999976653 244455544444433 231 5789999999985
No 238
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.94 E-value=3.2e-09 Score=94.85 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee------------------------CCeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------------AGFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~v~iiDTPG~~~~ 56 (265)
||.++||||||+|+|++... .+++++.+|..+......+ .+.++.++||||+..+
T Consensus 4 vG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~g 82 (318)
T cd01899 4 VGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPG 82 (318)
T ss_pred ECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCC
Confidence 69999999999999999874 7788888887776644332 2357899999999654
Q ss_pred CCCc----HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586 57 GYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 57 ~~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
.... ..+++.++ .+|++++|+++.
T Consensus 83 a~~~~glg~~fL~~ir------~aD~ii~Vvd~~ 110 (318)
T cd01899 83 AHEGKGLGNKFLDDLR------DADALIHVVDAS 110 (318)
T ss_pred ccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence 3322 13334444 789999998775
No 239
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.94 E-value=4.2e-09 Score=98.00 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc------------------------c------CCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV------------------------S------TFQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~------------------------~------~~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..++|||||+++|+....... . ...+.|..........++..+.+|||
T Consensus 13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDt 92 (426)
T TIGR00483 13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDC 92 (426)
T ss_pred EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEEC
Confidence 59999999999999995321000 0 01234444445566677889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC--HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD--NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~--~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||.. ++...+...+ ..+|++++|++.+...+. ......+. +.+..+. +++++|+||+|+.
T Consensus 93 pGh~-------~f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~---~~iIVviNK~Dl~ 154 (426)
T TIGR00483 93 PGHR-------DFIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGI---NQLIVAINKMDSV 154 (426)
T ss_pred CCHH-------HHHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCC---CeEEEEEEChhcc
Confidence 9963 2222222222 478999999877653221 12222222 2333332 5799999999985
No 240
>PRK13351 elongation factor G; Reviewed
Probab=98.93 E-value=1.4e-08 Score=99.92 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--c---------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV--T---------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~--~---------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..|+|||||+++|+..... . ..+ ..+.|.........+++..+.+|||||..+..
T Consensus 14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~------ 87 (687)
T PRK13351 14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT------ 87 (687)
T ss_pred ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH------
Confidence 699999999999999854210 0 000 01223334445667889999999999985421
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+..++ ..+|++++|++.+. .........++.+... ..|+++|+||+|+.
T Consensus 88 -~~~~~~l--~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 88 -GEVERSL--RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred -HHHHHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 2222222 37799999976654 3455555666655443 27899999999984
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.93 E-value=9.9e-09 Score=96.63 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc--------------C------------------CCCCCCccEEEEeeeCCeEEEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS--------------T------------------FQSEGPRPVMVSRSRAGFTLNIV 48 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~--------------~------------------~~~~t~~~~~~~~~~~g~~v~ii 48 (265)
+|..++|||||+++|+........ . ..+.|........+.++.++.+|
T Consensus 33 iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~i 112 (474)
T PRK05124 33 CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIA 112 (474)
T ss_pred ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEE
Confidence 699999999999999965421110 0 01122333334456678899999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||||.. .+...+...+ ..+|++|+|++.+. .+...+...+..+. ..+. +++++|+||+|+.
T Consensus 113 DTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l~~-~lg~---~~iIvvvNKiD~~ 173 (474)
T PRK05124 113 DTPGHE-------QYTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFIAT-LLGI---KHLVVAVNKMDLV 173 (474)
T ss_pred ECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHHHH-HhCC---CceEEEEEeeccc
Confidence 999952 2323333222 48899999976553 24343333333332 3332 6889999999985
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.93 E-value=1.4e-08 Score=94.90 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..++|||||+.+|+...... ..+ ..+.|........++++..++++||
T Consensus 13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDt 92 (446)
T PTZ00141 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDA 92 (446)
T ss_pred EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEEC
Confidence 5899999999999998521100 001 1123333444556778889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCC------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
||.. ++...+...+ ..+|++++|++.+..-+ ....++.+..+..+ |- +++|+++||+|.
T Consensus 93 PGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~iiv~vNKmD~ 157 (446)
T PTZ00141 93 PGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQMIVCINKMDD 157 (446)
T ss_pred CChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---CeEEEEEEcccc
Confidence 9963 3333333332 37899999976553212 23445555544433 32 467899999995
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.92 E-value=1.6e-08 Score=96.29 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK--AVTVSTFQ-------------------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|..|+|||||.++|+... ....+... +.|.........+++..+++|||||..+..
T Consensus 16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~-- 93 (526)
T PRK00741 16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFS-- 93 (526)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhH--
Confidence 5899999999999997321 11111100 111222234567789999999999985422
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+.+++ ..+|++++|++... ........+++..... ..|+++++||+|+.
T Consensus 94 -----~~~~~~l--~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~ 144 (526)
T PRK00741 94 -----EDTYRTL--TAVDSALMVIDAAK-GVEPQTRKLMEVCRLR-----DTPIFTFINKLDRD 144 (526)
T ss_pred -----HHHHHHH--HHCCEEEEEEecCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCccc
Confidence 2222222 26799999976653 3555555666554432 28999999999974
No 244
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.91 E-value=9.1e-09 Score=86.80 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEE--e--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS--R--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~--~--~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||++.++.... ...+. .|....... . .-....+.+|||||..... ... ..+. ...
T Consensus 15 iG~~g~GKTtLi~~~~~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~----~~~---~~~~--~~~ 82 (215)
T PTZ00132 15 VGDGGVGKTTFVKRHLTGEF--EKKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG----GLR---DGYY--IKG 82 (215)
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCC-CccceEEEEEEEEECCeEEEEEEEECCCchhhh----hhh---HHHh--ccC
Confidence 69999999999986654432 11111 122211211 2 2234578999999963221 111 1111 367
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|++++|++++.......-..++..+.+... . .++++|+||+|+.
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVK 126 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCc
Confidence 999999877642211222345555555432 2 6889999999984
No 245
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.91 E-value=2.3e-08 Score=96.60 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=64.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCccEEEEeeeC-----CeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~--------~~------~~~~t~~~~~~~~~~~-----g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..++|||||+++|+....... .+ ..+.|.........+. +..+++|||||..+..
T Consensus 13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~---- 88 (600)
T PRK05433 13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS---- 88 (600)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH----
Confidence 58999999999999986431110 00 1123333333333332 4678999999996532
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+.+++ ..+|++|+|++.+. .....+...+...... ..|+++|+||+|+.
T Consensus 89 ---~~v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~~-----~lpiIvViNKiDl~ 139 (600)
T PRK05433 89 ---YEVSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALEN-----DLEIIPVLNKIDLP 139 (600)
T ss_pred ---HHHHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 2233333 26799999976653 2444444444333221 26899999999984
No 246
>PRK12740 elongation factor G; Reviewed
Probab=98.91 E-value=2.3e-08 Score=98.10 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--cC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV--ST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~--~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..|+|||||+|+|+....... +. ..+.|.........+++..+++|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 69999999999999975532211 00 0122333334566778999999999998531
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...+...+ ..+|++++|++... .........+..+... ..|+++|+||+|..
T Consensus 74 ~~~~~~~l--~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 74 TGEVERAL--RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHHHH--HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 11222222 26799999976654 3455555666555443 27899999999985
No 247
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.88 E-value=9.4e-08 Score=81.43 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCCCCCCHHHHHHHHhCC-CcccccC-CCCCCCccEEEEeee---CCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSIIGE-KAVTVST-FQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL 72 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~-~~~~~~~-~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~ 72 (265)
+|++++|||+|+|.|+|. ..+.++. ..++|.........+ .+..+.++||||+.+..... +..+-.+...
T Consensus 13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~l-- 90 (224)
T cd01851 13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATL-- 90 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHH--
Confidence 699999999999999998 2444443 456666655555444 35789999999998765433 1222222211
Q ss_pred cCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586 73 NKTIDVLLYVDRLDVYRVDNLDKQITRAITD 103 (265)
Q Consensus 73 ~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~ 103 (265)
-.++++|.. .. .....+...+..+.+
T Consensus 91 --lss~~i~n~--~~-~~~~~~~~~l~~~~~ 116 (224)
T cd01851 91 --LSSVLIYNS--WE-TILGDDLAALMGLLK 116 (224)
T ss_pred --HhCEEEEec--cC-cccHHHHHHHHHHHH
Confidence 358888883 32 234455555544443
No 248
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.6e-07 Score=73.41 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
||..|+||+-|+..+...-. +.+..............+++|. ++.||||.|... .......+. +.+|+
T Consensus 13 vgnagvgktclvrrftqglf-ppgqgatigvdfmiktvev~gekiklqiwdtagqer-------frsitqsyy--rsaha 82 (213)
T KOG0095|consen 13 VGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER-------FRSITQSYY--RSAHA 82 (213)
T ss_pred EccCCcCcchhhhhhhccCC-CCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHH-------HHHHHHHHh--hhcce
Confidence 69999999999999887642 3332222233445556677765 568999999732 222222222 36799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++.....+---+|+..|.+..... .-.|+|.||.|+.+.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADR 127 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhh
Confidence 999999987554455568999998876554 346899999998643
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.88 E-value=1.2e-08 Score=86.98 Aligned_cols=118 Identities=17% Similarity=0.040 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~ 78 (265)
+|+.|+||||..+.+++.-.......-+.|.+........ ....+.+||.||..+.-... ....+.+- .++++
T Consensus 5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if-----~~v~~ 79 (232)
T PF04670_consen 5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF-----SNVGV 79 (232)
T ss_dssp EESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH-----CTESE
T ss_pred EcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH-----hccCE
Confidence 6999999999999999875433333334455555545543 45699999999987542210 00111221 48899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++||+++......+.-..+...+......+...++-+.+.|+|+.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 999976653333333333333343333223336788999999985
No 250
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.87 E-value=8.7e-09 Score=83.19 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|.+...+.. .........+.......++++ .+.||||.|... ++.+... --+++|.
T Consensus 15 LGDsGVGKtSLmn~yv~~kF~-~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQER--------FqsLg~a-FYRgaDc 84 (210)
T KOG0394|consen 15 LGDSGVGKTSLMNQYVNKKFS-QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQER--------FQSLGVA-FYRGADC 84 (210)
T ss_pred eCCCCccHHHHHHHHHHHHHH-HHhccccchhheeeEEEEcCeEEEEEEEecccHHH--------hhhcccc-eecCCce
Confidence 599999999999999987632 111122233444455666666 458999999732 2222210 1159999
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~ 123 (265)
+++|++++... |...+.---+.|.+.-..+ -.-|+|++.||.|..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 99999998744 5444433333333333222 346899999999984
No 251
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.86 E-value=2e-08 Score=93.77 Aligned_cols=119 Identities=23% Similarity=0.226 Sum_probs=83.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC---CCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS---EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~---~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.-|+||||||-+|+.++. +...+. ...-+ ........+..|+||+.-. .......++++ .+|
T Consensus 15 iGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~---~~~~~l~~Eir------kA~ 81 (625)
T KOG1707|consen 15 IGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDS---DDRLCLRKEIR------KAD 81 (625)
T ss_pred ECCCCccHHHHHHHHHhhhc--cccccccCCccccC--CccCcCcCceEEEeccccc---chhHHHHHHHh------hcC
Confidence 69999999999999999873 222221 11111 2333445568999997432 11223355665 779
Q ss_pred EEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 78 VLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 78 ~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
++++|+.+|.. .++.....|+..+.+.+|+-...|+|+|.||+|.......+.+.
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 99999988873 37777889999999999988889999999999985433333444
No 252
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.86 E-value=1.5e-08 Score=97.52 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCcc--EEEEeee----CC------------eEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP--VMVSRSR----AG------------FTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~--~~~~~~~----~g------------~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|.+|+|||||+|+|.|..+..... ...|.+. ....... .+ ..+++|||||..+..
T Consensus 12 ~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~----- 85 (586)
T PRK04004 12 LGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT----- 85 (586)
T ss_pred ECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH-----
Confidence 6999999999999999876422111 1111110 0000000 01 127899999984321
Q ss_pred HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
....+.. ..+|++++|++.+. .+.......+..+... ..|+++++||+|+.
T Consensus 86 --~~~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 86 --NLRKRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred --HHHHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 1111111 36899999977664 3556666666655442 27899999999984
No 253
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=3.2e-08 Score=91.57 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=43.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+++|||||.. ++...+.... ..+|++++|++.+..-......+.+..+ ...+. +++++|+||+|
T Consensus 79 ~~~i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccc
Confidence 4689999999973 2333333222 3679999997766421134444455444 33332 67999999999
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
+.
T Consensus 146 l~ 147 (406)
T TIGR03680 146 LV 147 (406)
T ss_pred cC
Confidence 85
No 254
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.85 E-value=1.9e-08 Score=93.23 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=41.5
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
..++++||||.. ++...+... ...+|++++|++.+..-........+..+.. .+ .+++++|+||+|+
T Consensus 85 ~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEeecc
Confidence 578999999962 222222211 1367999999766532113444555554433 22 1578999999998
Q ss_pred C
Q 024586 123 S 123 (265)
Q Consensus 123 ~ 123 (265)
.
T Consensus 152 ~ 152 (411)
T PRK04000 152 V 152 (411)
T ss_pred c
Confidence 5
No 255
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=5.1e-09 Score=82.63 Aligned_cols=51 Identities=33% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI 54 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~ 54 (265)
+|.+|+||||++|+|++.....++..++.|.+... ...++ .+.++||||+.
T Consensus 89 ~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 89 VGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 59999999999999999887666666666665443 33333 67999999984
No 256
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.82 E-value=1.8e-08 Score=92.72 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=57.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---------------------eC---CeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~v~iiDTPG~~~~ 56 (265)
||.++||||||+|+|++... .+++++.+|..+...... .+ ..++.++||||+.++
T Consensus 7 vG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~g 85 (396)
T PRK09602 7 VGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPG 85 (396)
T ss_pred ECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCC
Confidence 69999999999999999875 667788788777664432 11 246789999999765
Q ss_pred CCCc----HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586 57 GYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 57 ~~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
.... ..++..++ .+|++++|++..
T Consensus 86 a~~g~glg~~fL~~ir------~ad~ll~Vvd~~ 113 (396)
T PRK09602 86 AHEGRGLGNQFLDDLR------QADALIHVVDAS 113 (396)
T ss_pred ccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence 4322 23444454 789999998774
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.81 E-value=2.2e-08 Score=82.12 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|++|+|||+|...|..... ... .|.........+ .+..+.+||+||...-. ...++.+. ..+.+.
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~--~~T---~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~---~~~~~k 77 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKT--VPT---VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK---YLSNAK 77 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS-----B------SSEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH---HHGGEE
T ss_pred EcCCCCCHHHHHHHHhcCCc--CCe---eccccCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh---chhhCC
Confidence 59999999999999998742 111 122222222333 56689999999985322 23333322 224688
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcC----cCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g----~~~~~~~ivV~tk~D~~~ 124 (265)
+|+||++.. .+..+-....+.|...+- ..-..|++|+.||.|+..
T Consensus 78 ~IIfvvDSs--~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 78 GIIFVVDSS--TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEEETT--THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEEeCc--cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999995433 333334445555544442 123479999999999953
No 258
>PTZ00416 elongation factor 2; Provisional
Probab=98.80 E-value=4.5e-08 Score=98.03 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC---------------CCCCccEEEEeeeC----------CeEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ---------------SEGPRPVMVSRSRA----------GFTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~---------------~~t~~~~~~~~~~~----------g~~v~iiDTPG~~~ 55 (265)
+|..++|||||+++|++.......... +.|.........+. +..++++||||..+
T Consensus 25 iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~ 104 (836)
T PTZ00416 25 IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD 104 (836)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHh
Confidence 689999999999999975421111111 11111111223333 56799999999854
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
....+...+ ..+|++++|++... .+...+..+++.+.+.. .|+++++||+|+.
T Consensus 105 -------f~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 105 -------FSSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQER-----IRPVLFINKVDRA 157 (836)
T ss_pred -------HHHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence 222333332 37899999966543 36777777777776643 7999999999984
No 259
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.80 E-value=5e-08 Score=77.36 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|..|+||||+++.|+|+....++ .|......+.++.+.++.+||.-|.-... .+. +.|+ ...|+++
T Consensus 22 LGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~lr----~~W---~nYf--estdglI 88 (185)
T KOG0073|consen 22 LGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTLR----SYW---KNYF--ESTDGLI 88 (185)
T ss_pred EecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcchhH----HHH---HHhh--hccCeEE
Confidence 589999999999999998743222 34556667888999999999998874322 222 2222 2679999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCc-C-cCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGE-Q-IWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~-~-~~~~~ivV~tk~D~~ 123 (265)
||++..+.+.-++-... ++..... . +..+++++.||.|+.
T Consensus 89 wvvDssD~~r~~e~~~~---L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQE---LTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEECchHHHHHHHHHH---HHHHHhhhhhcCCceEEEEecCcCc
Confidence 99765442222222333 3333322 1 347999999999983
No 260
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.79 E-value=1.4e-09 Score=87.33 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|.||||||||+|+|++.....++.. ..+|+....+.... .-.||||||+.+.+..
T Consensus 41 ~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSFGLW 103 (161)
T ss_dssp ECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT--GC
T ss_pred ECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCccccc
Confidence 59999999999999999854444332 23444444333322 2369999999876544
No 261
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=1.3e-08 Score=89.83 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|.+||||||++|+|.|...+.+++.+++|....... . +..+.++||||+..+...+++
T Consensus 127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK--L-GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCCCCCCcHH
Confidence 6999999999999999998888888888877654322 2 346889999999877655543
No 262
>PRK12289 GTPase RsgA; Reviewed
Probab=98.77 E-value=7.1e-09 Score=93.78 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 58 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~ 58 (265)
+|.||||||||||+|++.....++..++ +|+....+...-++ .++||||+...+.
T Consensus 178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 6999999999999999987666665554 55555444332233 6999999976544
No 263
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.77 E-value=1.7e-07 Score=87.72 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--------------c----------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV--------------T----------VST------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..++|||||+-+|+-.... . ..+ ..+.|........+.+++.++++||
T Consensus 13 ~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt 92 (447)
T PLN00043 13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDA 92 (447)
T ss_pred EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEEC
Confidence 589999999999888732100 0 000 1123334444556677889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC------HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~------~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||.. ++...+...+ ..+|+.++|++.+...+. ...++.+..+ ...|- +++|+++||+|+.
T Consensus 93 PGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~~gi---~~iIV~vNKmD~~ 158 (447)
T PLN00043 93 PGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FTLGV---KQMICCCNKMDAT 158 (447)
T ss_pred CCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHH-HHcCC---CcEEEEEEcccCC
Confidence 9973 4444444433 378999999776642232 2333333322 22332 4689999999974
No 264
>PRK12288 GTPase RsgA; Reviewed
Probab=98.76 E-value=9.9e-09 Score=92.76 Aligned_cols=56 Identities=29% Similarity=0.524 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|.||||||||+|+|++.....++..+. +|+....+....++ .|+||||+.+.+..
T Consensus 211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l~ 273 (347)
T PRK12288 211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGLW 273 (347)
T ss_pred ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccCC
Confidence 6999999999999999987666655432 33333333332233 49999999876553
No 265
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.75 E-value=1.1e-08 Score=89.47 Aligned_cols=55 Identities=27% Similarity=0.518 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 58 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~ 58 (265)
+|.||||||||+|+|.++....++.. ..||+....+....+|. |+||||+.+.+.
T Consensus 170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~l 231 (301)
T COG1162 170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLGL 231 (301)
T ss_pred ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccCc
Confidence 59999999999999999654343332 23455554445444554 999999987655
No 266
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=2.3e-08 Score=87.88 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|.+|+||||++|+|.+.....++..+++|....... . +..+.++||||+..+...+.
T Consensus 124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK--L-SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE--e-CCCEEEEECCCcccCCCCch
Confidence 6999999999999999998778888888877665333 2 23688999999976654443
No 267
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-07 Score=86.80 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHhCCCccccc------------CC---CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586 5 GVGKSSTVNSIIGEKAVTVS------------TF---QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR 69 (265)
Q Consensus 5 g~GKSSliN~llg~~~~~~~------------~~---~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~ 69 (265)
.-|||||+..|+.+...+.. +. .+.|.-.......++|..++|+||||..|.+..-+..++
T Consensus 15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~---- 90 (603)
T COG1217 15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLS---- 90 (603)
T ss_pred cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhh----
Confidence 46999999999976432111 00 122222333467789999999999999887765444443
Q ss_pred HHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc
Q 024586 70 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 149 (265)
Q Consensus 70 ~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 149 (265)
-+|.+|++++... ..-++.+..++.-.+.. -+-|+|+||.|.. ...+++-+. +.+--+++-.+
T Consensus 91 -----MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~g-----L~PIVVvNKiDrp---~Arp~~Vvd---~vfDLf~~L~A 153 (603)
T COG1217 91 -----MVDGVLLLVDASE-GPMPQTRFVLKKALALG-----LKPIVVINKIDRP---DARPDEVVD---EVFDLFVELGA 153 (603)
T ss_pred -----hcceEEEEEEccc-CCCCchhhhHHHHHHcC-----CCcEEEEeCCCCC---CCCHHHHHH---HHHHHHHHhCC
Confidence 3477777744332 23344555554333332 5668889999973 334444442 33333444443
Q ss_pred cccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCC
Q 024586 150 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS 204 (265)
Q Consensus 150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~ 204 (265)
..... ..|++.++......+- ...+...-+..|++.|++.+|+-.
T Consensus 154 ~deQL-----dFPivYAS~~~G~a~~-----~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 154 TDEQL-----DFPIVYASARNGTASL-----DPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ChhhC-----CCcEEEeeccCceecc-----CccccccchhHHHHHHHHhCCCCC
Confidence 32222 2466555544222211 112222229999999999998754
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.74 E-value=4.5e-08 Score=96.67 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcc---------cccCC------CCCCCccEE----EEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV---------TVSTF------QSEGPRPVM----VSRSRAGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~---------~~~~~------~~~t~~~~~----~~~~~~g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..|+|||||+++|+..... ...++ .+.|..... ....+++..+++|||||+.+.. .
T Consensus 25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~---~ 101 (720)
T TIGR00490 25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG---G 101 (720)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH---H
Confidence 589999999999999853110 00011 112222211 2245667889999999996532 2
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+....++ .+|++|+|++... .....+..+++.+.+.. .|.++|+||+|..
T Consensus 102 ~~~~al~------~aD~~llVvda~~-g~~~~t~~~~~~~~~~~-----~p~ivviNKiD~~ 151 (720)
T TIGR00490 102 DVTRAMR------AVDGAIVVVCAVE-GVMPQTETVLRQALKEN-----VKPVLFINKVDRL 151 (720)
T ss_pred HHHHHHH------hcCEEEEEEecCC-CCCccHHHHHHHHHHcC-----CCEEEEEEChhcc
Confidence 2222333 7899999976543 24555556665544332 6778999999984
No 269
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.2e-07 Score=71.59 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+.+||+|++-+.++... .+.+-++ +......... -....+.||||.|... ...|... .-++++
T Consensus 27 iGnssvGKTSfl~ry~ddSF--t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiTTa-yyRgam 95 (193)
T KOG0093|consen 27 IGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTITTA-YYRGAM 95 (193)
T ss_pred EccCCccchhhhHHhhcccc--ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHHHH-Hhhccc
Confidence 69999999999999999762 2222211 1111111111 1235789999999832 2233221 125899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
++++++++........-..+.-.|....-.+ .++|+|.||||+...+
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSER 142 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccce
Confidence 9999988775332233344444444432222 6899999999995433
No 270
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.71 E-value=1.8e-08 Score=87.01 Aligned_cols=54 Identities=31% Similarity=0.419 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 58 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~ 58 (265)
+|.+|||||||+|+|++.....++... .+|+....+.. -+| .|+||||+.+.+.
T Consensus 126 ~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l 186 (245)
T TIGR00157 126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGL 186 (245)
T ss_pred ECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCC
Confidence 699999999999999997654444332 25555554444 233 6999999987654
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=8.7e-08 Score=86.54 Aligned_cols=176 Identities=17% Similarity=0.230 Sum_probs=96.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----------------ccc-------------CCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV-----------------TVS-------------TFQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~-----------------~~~-------------~~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|...+|||||+-.|+-+... ..+ ...+.|.......++-+...++|+|+
T Consensus 13 iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDa 92 (428)
T COG5256 13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDA 92 (428)
T ss_pred EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeC
Confidence 689999999999888743110 000 01122323333344455667999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
||..| -..++|.-+ ..+|+.++|++..... ...+.++ .-.|.+..|- .+.||++||+|..+
T Consensus 93 PGHrd------FvknmItGa---sqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi---~~lIVavNKMD~v~ 159 (428)
T COG5256 93 PGHRD------FVKNMITGA---SQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGI---KQLIVAVNKMDLVS 159 (428)
T ss_pred CchHH------HHHHhhcch---hhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCC---ceEEEEEEcccccc
Confidence 99632 122233211 3789999997666542 2222332 2345566663 78999999999965
Q ss_pred CCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC--hHHHHHHHHHHhhC
Q 024586 125 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVKTITEVVLN 202 (265)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~i~~~~~~ 202 (265)
.++..+++.. ..+..+++.++ |+.. .++++.++. +++.+-.+.- +...| -+.|++.+-..-++
T Consensus 160 wde~rf~ei~----~~v~~l~k~~G-~~~~-----~v~FIPiSg----~~G~Nl~~~s-~~~pWY~GpTLleaLd~~~~p 224 (428)
T COG5256 160 WDEERFEEIV----SEVSKLLKMVG-YNPK-----DVPFIPISG----FKGDNLTKKS-ENMPWYKGPTLLEALDQLEPP 224 (428)
T ss_pred cCHHHHHHHH----HHHHHHHHHcC-CCcc-----CCeEEeccc----ccCCcccccC-cCCcCccCChHHHHHhccCCC
Confidence 4443343333 34445555544 3322 244444443 2232222211 34567 68899998866666
Q ss_pred CC
Q 024586 203 GS 204 (265)
Q Consensus 203 ~~ 204 (265)
++
T Consensus 225 ~~ 226 (428)
T COG5256 225 ER 226 (428)
T ss_pred CC
Confidence 53
No 272
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=3.8e-08 Score=88.25 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~ 60 (265)
||-++|||||+||+|+|...+.++..+++|......... ..+.++||||+.-.....
T Consensus 138 vG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred EcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCCccc
Confidence 699999999999999999998999999888765544433 237899999997665544
No 273
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=80.26 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC---CcHHHHHHHHHHHhcC--
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNK-- 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~-~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~---~~~~~~~~i~~~l~~~-- 74 (265)
+|.|++|||||+|.++..... ..+. +.+...+......-|..+.++|.||++-.+. ..+++-...+.++..+
T Consensus 142 ~g~SNVGKSSLln~~~r~k~~~~t~k--~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~n 219 (320)
T KOG2486|consen 142 YGRSNVGKSSLLNDLVRVKNIADTSK--SKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLEREN 219 (320)
T ss_pred ecCCcccHHHHHhhhhhhhhhhhhcC--CCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhh
Confidence 589999999999999986532 1221 1222222233334467889999999665432 2234445555555432
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
-..+||+|+... .+...|...++.+.+.. .|+.+||||+|..
T Consensus 220 Lv~~FLLvd~sv--~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 220 LVRVFLLVDASV--PIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ 261 (320)
T ss_pred hheeeeeeeccC--CCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence 356777773222 35566666666666654 8999999999973
No 274
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.63 E-value=4.9e-07 Score=84.65 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
..+.++||||. +.+...+...+ ..+|++++|++.+......+..+.+.. ....|- +++|+|+||+|+
T Consensus 117 ~~i~~IDtPGH-------~~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~i-~~~lgi---~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGH-------DILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLAA-VEIMKL---KHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCH-------HHHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHHH-HHHcCC---CcEEEEEecccc
Confidence 47899999996 23333333322 378999999766632123333344433 333442 689999999998
Q ss_pred C
Q 024586 123 S 123 (265)
Q Consensus 123 ~ 123 (265)
.
T Consensus 184 v 184 (460)
T PTZ00327 184 V 184 (460)
T ss_pred c
Confidence 5
No 275
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=1.5e-07 Score=80.84 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=86.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---CCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcH------HHH-----
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNY------HAI----- 64 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~---~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~------~~~----- 64 (265)
||.||.|||||+++|++........ .+........+...-.+. +++|+||.|++|.-..++ +++
T Consensus 48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFE 127 (406)
T KOG3859|consen 48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFE 127 (406)
T ss_pred eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHH
Confidence 6999999999999999986421111 111112222233333333 579999999997532211 111
Q ss_pred ---H---HHHHHH---hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHh
Q 024586 65 ---Q---LIKRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS 135 (265)
Q Consensus 65 ---~---~i~~~l---~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~ 135 (265)
+ .|++.+ .+..+|++||.+...+..+...|.-.++.+... .++|-|+.|+|-. +-++...
T Consensus 128 aYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDti-----sK~eL~~ 196 (406)
T KOG3859|consen 128 AYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTI-----SKEELKR 196 (406)
T ss_pred HHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhh-----hHHHHHH
Confidence 1 122222 346899999998888777888898888888775 6889999999974 2233333
Q ss_pred hchHHHHHHHhccc
Q 024586 136 KRSEALLKFVSPST 149 (265)
Q Consensus 136 ~~~~~l~~~i~~~~ 149 (265)
-....+.+++.++.
T Consensus 197 FK~kimsEL~sngv 210 (406)
T KOG3859|consen 197 FKIKIMSELVSNGV 210 (406)
T ss_pred HHHHHHHHHHhcCc
Confidence 33455556666554
No 276
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.62 E-value=5.3e-08 Score=76.80 Aligned_cols=113 Identities=19% Similarity=0.092 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc--cEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR--PVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~--~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|+.-||||||+-.+...+. . ...-+|.+ .......+.+ ..+.||||.|......... |. -++.
T Consensus 19 LGEGCVGKtSLVLRy~EnkF-n--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP-----IY----YRgS 86 (218)
T KOG0088|consen 19 LGEGCVGKTSLVLRYVENKF-N--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP-----IY----YRGS 86 (218)
T ss_pred EcCCccchhHHHHHHHHhhc-c--hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-----eE----EeCC
Confidence 58888999999988876542 1 11111111 0111222333 4679999999743221111 11 1478
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+..|+|+++.+......-+.|+..|..+.|.+ .-+++|.||.|+...+.
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~ 135 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQ 135 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhh
Confidence 99999999887545566789999999999987 67899999999953333
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.61 E-value=7.8e-07 Score=82.19 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=47.4
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.||||||.. ..++...+++........+|.+++|+ |+. ........++.+.+.. ...-+|+||.|
T Consensus 182 ~~DvViIDTaGr~---~~d~~lm~El~~i~~~~~p~e~lLVl--da~-~Gq~a~~~a~~F~~~~-----~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRH---KQEDSLFEEMLQVAEAIQPDNIIFVM--DGS-IGQAAEAQAKAFKDSV-----DVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCC---cchHHHHHHHHHHhhhcCCcEEEEEe--ccc-cChhHHHHHHHHHhcc-----CCcEEEEECcc
Confidence 5688999999973 34455666666665445788889994 432 2233344555555443 56789999999
Q ss_pred CCC
Q 024586 122 LSL 124 (265)
Q Consensus 122 ~~~ 124 (265)
...
T Consensus 251 ~~a 253 (429)
T TIGR01425 251 GHA 253 (429)
T ss_pred CCC
Confidence 853
No 278
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.60 E-value=3.4e-07 Score=91.88 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCCCccEEEEeee----------------CCeEEEEEe
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSR----------------AGFTLNIVD 49 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~---------------~~~t~~~~~~~~~~----------------~g~~v~iiD 49 (265)
+|..++|||||+++|+.......... .+.|.........+ .+..++++|
T Consensus 25 iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 104 (843)
T PLN00116 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLID 104 (843)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEEC
Confidence 58999999999999996542111110 01122221222223 266789999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 50 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|||..+ +...+...+ ..+|+.++|++... .+....+.+++.+.+.. .|+++++||+|..
T Consensus 105 tPGh~d-------F~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~-----~p~i~~iNK~D~~ 163 (843)
T PLN00116 105 SPGHVD-------FSSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGER-----IRPVLTVNKMDRC 163 (843)
T ss_pred CCCHHH-------HHHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHCC-----CCEEEEEECCccc
Confidence 999843 223333333 37799999966543 35566666776665543 7899999999984
No 279
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.58 E-value=7.3e-07 Score=70.09 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.-++|||+++..|+-.+........++..+.+....+-+ ...+.++||.|+.++.. + .=+.|+ .-+|
T Consensus 15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---e---Lprhy~--q~aD 86 (198)
T KOG3883|consen 15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---E---LPRHYF--QFAD 86 (198)
T ss_pred ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---h---hhHhHh--ccCc
Confidence 37789999999988886554344444444444444444332 23689999999976521 1 112233 2569
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+|++|++.++.+..+.-..+-+.|.+ +-+.--.|++++.|+.|+..+.+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk-~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDK-HKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhh-ccccccccEEEEechhhcccchhc
Confidence 99999877653311111122233333 222234789999999999755543
No 280
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.58 E-value=6.6e-08 Score=88.05 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHhCCC-----cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~ 74 (265)
||.+|||||||+|+|++.. .+.++..+++|....... . +..+.++||||+......... ..+.++......
T Consensus 160 vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~ 236 (360)
T TIGR03597 160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKK 236 (360)
T ss_pred ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCC
Confidence 6999999999999999854 346677777776655333 2 223579999999765311110 011222222334
Q ss_pred CccEEEEEE
Q 024586 75 TIDVLLYVD 83 (265)
Q Consensus 75 ~~d~iL~V~ 83 (265)
+.+...|+.
T Consensus 237 ~i~~~~~~l 245 (360)
T TIGR03597 237 EIKPKTYQL 245 (360)
T ss_pred ccCceEEEe
Confidence 566777763
No 281
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.58 E-value=6.6e-07 Score=80.30 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=36.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk 119 (265)
.|..+.|+||+|.+... .. .+. .+|++++|.... ...+.+.++. +.+. .-++|+||
T Consensus 147 ~g~d~viieT~Gv~qs~---~~---i~~------~aD~vlvv~~p~----~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TA---VAG------MVDFFLLLQLPG----AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred cCCCEEEEECCCCccch---hH---HHH------hCCEEEEEecCC----chHHHHHHHhhhhhh-------hheEEeeh
Confidence 46779999999997432 11 122 579999995322 1234444332 3232 23899999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
+|+.
T Consensus 204 aDl~ 207 (332)
T PRK09435 204 ADGD 207 (332)
T ss_pred hccc
Confidence 9985
No 282
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.58 E-value=1e-07 Score=74.30 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|-.++||||++|.++.... +..-..|........+-+...+.+||.||...... ..+ +|. +++++++
T Consensus 26 vGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs----mWe---ryc--R~v~aiv 93 (186)
T KOG0075|consen 26 VGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS----MWE---RYC--RGVSAIV 93 (186)
T ss_pred EeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHH----HHH---HHh--hcCcEEE
Confidence 58889999999999887542 11122344445566777788999999999853322 222 221 5899999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQL 122 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~ 122 (265)
||++..+.. ++..-.+ +.....+. ...|++|+.||.|+
T Consensus 94 Y~VDaad~~k~~~sr~E----L~~LL~k~~l~gip~LVLGnK~d~ 134 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSE----LHDLLDKPSLTGIPLLVLGNKIDL 134 (186)
T ss_pred EEeecCCcccchhhHHH----HHHHhcchhhcCCcEEEecccccC
Confidence 996544322 3333222 23333322 23799999999998
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.57 E-value=2.5e-07 Score=91.65 Aligned_cols=108 Identities=15% Similarity=0.240 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc---------CC------CCCCCccEEEEeee----CCeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS---------TF------QSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~---------~~------~~~t~~~~~~~~~~----~g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..++|||||+.+|+........ ++ .+.|.........+ .+..++++||||..+..
T Consensus 26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~---- 101 (731)
T PRK07560 26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG---- 101 (731)
T ss_pred EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH----
Confidence 588999999999999864321110 00 01122222222222 46789999999996531
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+...+ ..+|++++|++... .....++.+++...+.. .+.|+++||+|..
T Consensus 102 ---~~~~~~l--~~~D~avlVvda~~-g~~~~t~~~~~~~~~~~-----~~~iv~iNK~D~~ 152 (731)
T PRK07560 102 ---GDVTRAM--RAVDGAIVVVDAVE-GVMPQTETVLRQALRER-----VKPVLFINKVDRL 152 (731)
T ss_pred ---HHHHHHH--HhcCEEEEEEECCC-CCCccHHHHHHHHHHcC-----CCeEEEEECchhh
Confidence 2233322 27799999966543 35666667776654432 5679999999974
No 284
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.56 E-value=5.5e-08 Score=80.35 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=80.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
||..++|||+++.++.... +...+.++-.+.......++ |+. +.+|||.|..+.+. ++ -++-+..|
T Consensus 10 VGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr--------lR-plsY~~td 78 (198)
T KOG0393|consen 10 VGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR--------LR-PLSYPQTD 78 (198)
T ss_pred ECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc--------cc-ccCCCCCC
Confidence 6999999999998877663 33444444456666677785 775 58999999876532 11 22336889
Q ss_pred EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+||+|+++++.. +...-..++.++...... .|+|+|+||.|+.
T Consensus 79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred EEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 999999888644 555567888888887744 8999999999995
No 285
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.7e-06 Score=80.55 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=73.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
||.-.-|||||+.+|-+..++... ..+.|.+.-.+.... .|..+++.||||. .++..|+.- -....|.+
T Consensus 159 MGHVDHGKTTLLD~lRks~VAA~E-~GGITQhIGAF~V~~p~G~~iTFLDTPGH--------aAF~aMRaR-GA~vtDIv 228 (683)
T KOG1145|consen 159 MGHVDHGKTTLLDALRKSSVAAGE-AGGITQHIGAFTVTLPSGKSITFLDTPGH--------AAFSAMRAR-GANVTDIV 228 (683)
T ss_pred eecccCChhhHHHHHhhCceehhh-cCCccceeceEEEecCCCCEEEEecCCcH--------HHHHHHHhc-cCccccEE
Confidence 577888999999999998875433 344565544444332 6899999999997 555565531 11246999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
++|+..|+ .+-++..+.++..+.. ..|+|+.+||+|.
T Consensus 229 VLVVAadD-GVmpQT~EaIkhAk~A-----~VpiVvAinKiDk 265 (683)
T KOG1145|consen 229 VLVVAADD-GVMPQTLEAIKHAKSA-----NVPIVVAINKIDK 265 (683)
T ss_pred EEEEEccC-CccHhHHHHHHHHHhc-----CCCEEEEEeccCC
Confidence 99988776 4555555555444443 3899999999996
No 286
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.6e-07 Score=82.86 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC------------------eEEEEEeCCCCCCCCCCc--
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVN-- 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~v~iiDTPG~~~~~~~~-- 60 (265)
||.++||||||.|+++... +...+++.+|.+|......+.. .++.++|.+|+-.+.+..
T Consensus 8 VGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG 86 (372)
T COG0012 8 VGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG 86 (372)
T ss_pred ecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence 6999999999999999988 5788899999988776554321 147999999998764433
Q ss_pred --HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586 61 --YHAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 61 --~~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
-+.+..|+ .+|+|+.|++..
T Consensus 87 LGNkFL~~IR------evdaI~hVVr~f 108 (372)
T COG0012 87 LGNKFLDNIR------EVDAIIHVVRCF 108 (372)
T ss_pred cchHHHHhhh------hcCeEEEEEEec
Confidence 36777777 789999997765
No 287
>PRK00098 GTPase RsgA; Reviewed
Probab=98.53 E-value=2.1e-07 Score=82.60 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
+|.+|||||||+|+|+|.....++.... +|+....+..... ..++||||+.+.+
T Consensus 170 ~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~~ 230 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSFG 230 (298)
T ss_pred ECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCccC
Confidence 6999999999999999986544444332 4443333333222 3699999997543
No 288
>PRK13768 GTPase; Provisional
Probab=98.50 E-value=1.1e-06 Score=76.29 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=44.0
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+.++||||..+..... .....+.+.+.....+++++|++... ..+..+......+....-....+|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~-~~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFR-ESGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhh-HHHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 58999999986643222 12222233332223789999954432 23445544443332111001238999999999986
Q ss_pred CC
Q 024586 124 LP 125 (265)
Q Consensus 124 ~~ 125 (265)
..
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 43
No 289
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.1e-06 Score=69.10 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-ccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||-|+..++...... +++. ...+....-..++|. ++.||||.|.. ......+.+. +++-
T Consensus 15 iG~aGtGKSCLLh~Fie~kfkDdssHT--iGveFgSrIinVGgK~vKLQIWDTAGQE-------rFRSVtRsYY--RGAA 83 (214)
T KOG0086|consen 15 IGSAGTGKSCLLHQFIENKFKDDSSHT--IGVEFGSRIVNVGGKTVKLQIWDTAGQE-------RFRSVTRSYY--RGAA 83 (214)
T ss_pred eccCCCChhHHHHHHHHhhhcccccce--eeeeecceeeeecCcEEEEEEeecccHH-------HHHHHHHHHh--cccc
Confidence 5999999999999998765311 1111 111111223344554 56899999972 3333333333 4777
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 131 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~ 131 (265)
..|+|+++........-..|+.-+..+..++ .-++++.||.|+.+.++.+..
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vtfl 135 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFL 135 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHH
Confidence 7888888775333333445666666655444 557788899999655554443
No 290
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=1.3e-07 Score=86.25 Aligned_cols=53 Identities=32% Similarity=0.455 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHhCCC-----cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~ 56 (265)
||.+|||||||+|+|++.. ...++..+++|........ ++ ...++||||+...
T Consensus 166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 166 VGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD-GSFLYDTPGIIHR 223 (365)
T ss_pred EcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--CC-CcEEEECCCcccc
Confidence 6999999999999999642 3346778888876554433 22 2479999999643
No 291
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.47 E-value=6.6e-07 Score=81.04 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCC----C
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY----V 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~----~ 59 (265)
||.+++|||||.|+|++.....++.++.+|..+......+.+ ..+.++|.||+..+.. .
T Consensus 8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl 87 (368)
T TIGR00092 8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL 87 (368)
T ss_pred ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence 699999999999999999865777888888888877666554 2578999999987533 2
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
....+..++ .+|++++|++..
T Consensus 88 gn~fL~~ir------~~d~l~hVvr~f 108 (368)
T TIGR00092 88 GNQFLANIR------EVDIIQHVVRCF 108 (368)
T ss_pred chHHHHHHH------hCCEEEEEEeCC
Confidence 336677776 679999997764
No 292
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-06 Score=83.80 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=45.0
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 45 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 45 v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+.++|.||+.-+...+. + ..+.| ..+|+++||..... .++..+++++....+. .+++.|+-||+|..
T Consensus 208 ivliDsPGld~~se~ts-w--id~~c---ldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~-----KpniFIlnnkwDas 274 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTS-W--IDSFC---LDADVFVLVVNAEN-TLTLSEKQFFHKVSEE-----KPNIFILNNKWDAS 274 (749)
T ss_pred ceeccCCCCCCchhhhH-H--HHHHh---hcCCeEEEEecCcc-HhHHHHHHHHHHhhcc-----CCcEEEEechhhhh
Confidence 68999999965433222 1 22333 38899999965443 4788888887766654 26677777788985
No 293
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.44 E-value=4.3e-06 Score=67.83 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=72.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc----CCCC-----CCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS----TFQS-----EGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRF 70 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~----~~~~-----~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~~~~~i~~~ 70 (265)
+|..|+||||++.++.......+. .... +|...-.......+ ..+.++||||.... +-+-..
T Consensus 16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF--------~fm~~~ 87 (187)
T COG2229 16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF--------KFMWEI 87 (187)
T ss_pred EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH--------HHHHHH
Confidence 488999999999999987632221 1111 22211122334444 78999999998332 222222
Q ss_pred HhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhcc
Q 024586 71 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS 148 (265)
Q Consensus 71 l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 148 (265)
+. +++...++++ |+.+ .+..+..+++.+..... .|++|..||.|+. +.++. +.+++++..+
T Consensus 88 l~-~ga~gaivlV--Dss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~--~a~pp--------e~i~e~l~~~ 149 (187)
T COG2229 88 LS-RGAVGAIVLV--DSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLF--DALPP--------EKIREALKLE 149 (187)
T ss_pred Hh-CCcceEEEEE--ecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccC--CCCCH--------HHHHHHHHhc
Confidence 22 4666666663 4333 33355667766665542 7999999999994 44444 4455555444
No 294
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.44 E-value=3.2e-07 Score=81.03 Aligned_cols=54 Identities=26% Similarity=0.504 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
+|.+|+|||||+|+|+|.....++... .+|...........+ .++||||+.+..
T Consensus 167 ~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 167 VGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 699999999999999998654443322 233333333332223 599999996643
No 295
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.4e-06 Score=79.56 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHhCCCcccc--------------cCCCCCCCccEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586 5 GVGKSSTVNSIIGEKAVTV--------------STFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLI 67 (265)
Q Consensus 5 g~GKSSliN~llg~~~~~~--------------~~~~~~t~~~~~~~~~~~g---~~v~iiDTPG~~~~~~~~~~~~~~i 67 (265)
.-|||||..+|+....+.- ..-.+.|...+..+..+.+ ..+++|||||.-|.+..-. ..+
T Consensus 70 DHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVs---Rsl 146 (650)
T KOG0462|consen 70 DHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVS---RSL 146 (650)
T ss_pred cCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceeh---ehh
Confidence 4699999999996433111 1122455555555665555 6789999999987654222 233
Q ss_pred HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
. -+|.+|+|++... ....+. +.-+...|..+ -.+|.|+||.|+.
T Consensus 147 a------ac~G~lLvVDA~q-GvqAQT---~anf~lAfe~~--L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 147 A------ACDGALLVVDASQ-GVQAQT---VANFYLAFEAG--LAIIPVLNKIDLP 190 (650)
T ss_pred h------hcCceEEEEEcCc-CchHHH---HHHHHHHHHcC--CeEEEeeeccCCC
Confidence 3 4578888844432 233333 33333333222 6789999999984
No 296
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.41 E-value=1.6e-06 Score=68.96 Aligned_cols=122 Identities=18% Similarity=0.106 Sum_probs=73.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
||.+-+|||||+..+...+.+..++. ..+.+....-.+ ..| .++.+|||.|.. ......+.+. +..-
T Consensus 14 igdstvgkssll~~ft~gkfaelsdp-tvgvdffarlie~~pg~riklqlwdtagqe-------rfrsitksyy--rnsv 83 (213)
T KOG0091|consen 14 IGDSTVGKSSLLRYFTEGKFAELSDP-TVGVDFFARLIELRPGYRIKLQLWDTAGQE-------RFRSITKSYY--RNSV 83 (213)
T ss_pred EcCCcccHHHHHHHHhcCcccccCCC-ccchHHHHHHHhcCCCcEEEEEEeeccchH-------HHHHHHHHHh--hccc
Confidence 69999999999999998876555531 111111110111 123 467899999973 2233333333 2445
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
.+|+|++++..+..+.-..+++.-+...+.....-+.+|.+|+|+...+..+.++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE 138 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE 138 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence 6788888876554455566776666555422223356789999997556666554
No 297
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.38 E-value=4.4e-07 Score=83.86 Aligned_cols=57 Identities=32% Similarity=0.453 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~ 60 (265)
||-++|||||+||+|.|.+...+|..++.|.+.++...+ -.+.+.|+||+.-+.+..
T Consensus 320 VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 320 VGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred ecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCCCc
Confidence 799999999999999999988899989888877765554 457899999997766554
No 298
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.7e-06 Score=78.38 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=79.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
||.--.|||||+..|-+.+++. +...+-|.+...+....+ ...++++||||. +.+..|+.- =..-.|
T Consensus 11 mGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRaR-Ga~vtD 80 (509)
T COG0532 11 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRAR-GASVTD 80 (509)
T ss_pred eCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHhc-CCcccc
Confidence 5778899999999999998743 334456777777777764 478999999997 455555531 001258
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+++|+..|+ .+-++..+.++.++... -|++|..||.|..
T Consensus 81 IaILVVa~dD-Gv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~ 120 (509)
T COG0532 81 IAILVVAADD-GVMPQTIEAINHAKAAG-----VPIVVAINKIDKP 120 (509)
T ss_pred EEEEEEEccC-CcchhHHHHHHHHHHCC-----CCEEEEEecccCC
Confidence 8999988876 46677777777776654 8999999999984
No 299
>PTZ00099 rab6; Provisional
Probab=98.35 E-value=5.1e-06 Score=68.10 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=48.5
Q ss_pred eeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586 38 RSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 38 ~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~i 114 (265)
..+++ .++.||||||...... ....++ .++|++|+|++++... +... ..++..+.+..++. .|++
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~~-------~~~~~~--~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~~--~pii 89 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFRS-------LIPSYI--RDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKD--VIIA 89 (176)
T ss_pred EEECCEEEEEEEEECCChHHhhh-------ccHHHh--CCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCC--CeEE
Confidence 44444 5678999999843321 112222 4899999998887532 3333 45666665554433 6889
Q ss_pred EEEeCccCCC
Q 024586 115 IVLTHAQLSL 124 (265)
Q Consensus 115 vV~tk~D~~~ 124 (265)
+|+||+|+..
T Consensus 90 lVgNK~DL~~ 99 (176)
T PTZ00099 90 LVGNKTDLGD 99 (176)
T ss_pred EEEECccccc
Confidence 9999999953
No 300
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.35 E-value=9.8e-07 Score=67.16 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
||.+|+||+||.|+|.|+.... .. ....+++.. -.|||||-+ ..+..+...+-. ....+|+++
T Consensus 7 vG~~gcGKTtL~q~L~G~~~ly--------kK--TQAve~~d~--~~IDTPGEy---~~~~~~Y~aL~t--t~~dadvi~ 69 (148)
T COG4917 7 VGQVGCGKTTLFQSLYGNDTLY--------KK--TQAVEFNDK--GDIDTPGEY---FEHPRWYHALIT--TLQDADVII 69 (148)
T ss_pred ecccccCchhHHHHhhcchhhh--------cc--cceeeccCc--cccCCchhh---hhhhHHHHHHHH--Hhhccceee
Confidence 6999999999999999986311 01 112233221 269999964 223333333322 224889999
Q ss_pred EEEecCCc--CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~--r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|..+++. +|... |..-..+++|-|+||+|+.
T Consensus 70 ~v~~and~~s~f~p~-----------f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 70 YVHAANDPESRFPPG-----------FLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred eeecccCccccCCcc-----------cccccccceEEEEeccccc
Confidence 99766642 12221 2222236799999999996
No 301
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.33 E-value=5.9e-07 Score=76.32 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i 79 (265)
+|-+.+|||||+..|.+..- ....+..+|..|.....+++|-.+.+.|.||+.++.....- -.+.|. .++.+|++
T Consensus 68 IGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvia---vArtaDli 143 (364)
T KOG1486|consen 68 IGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIA---VARTADLI 143 (364)
T ss_pred ecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEE---EeecccEE
Confidence 68999999999999998653 44456678899999999999999999999999987654431 111111 22478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFG 106 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g 106 (265)
|+| +|+++ .+..+..++.-.+..|
T Consensus 144 lMv--LDatk-~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 144 LMV--LDATK-SEDQREILEKELEAVG 167 (364)
T ss_pred EEE--ecCCc-chhHHHHHHHHHHHhc
Confidence 999 66544 3344556655444444
No 302
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.29 E-value=8.9e-07 Score=77.73 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=75.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~ 78 (265)
||.|++|||||+|+|++...... +.-..|.++..+... ..|..+.+.||-||... .+-.........|. -..+|+
T Consensus 184 VGYTNaGKsTLikaLT~Aal~p~-drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~ATLeeVaeadl 260 (410)
T KOG0410|consen 184 VGYTNAGKSTLIKALTKAALYPN-DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQATLEEVAEADL 260 (410)
T ss_pred EeecCccHHHHHHHHHhhhcCcc-chhheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHHHHHHhhcce
Confidence 69999999999999997654222 223345565555554 45788999999999753 22222222222221 137899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~ 123 (265)
+|.|.+++......+....+..+..+.-+. ...++|=|-||.|..
T Consensus 261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 999977775444444555666665543221 234567788888874
No 303
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=7.4e-06 Score=73.21 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=43.7
Q ss_pred EEEEeCCCCCCCCCCc-H---HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 45 LNIVDTPGLIEGGYVN-Y---HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 45 v~iiDTPG~~~~~~~~-~---~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
++||||||+.++..+. . .....+.=| ...+|.|+++++..--.++++-..++..+. |.+ ..+-||+||+
T Consensus 149 vtiVdtPGILsgeKQrisR~ydF~~v~~WF--aeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E--dkiRVVLNKA 221 (532)
T KOG1954|consen 149 VTIVDTPGILSGEKQRISRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFKRVIDALK---GHE--DKIRVVLNKA 221 (532)
T ss_pred eeeeccCcccccchhcccccCChHHHHHHH--HHhccEEEEEechhhccccHHHHHHHHHhh---CCc--ceeEEEeccc
Confidence 7999999998765331 0 111111111 247899999954332224455555555554 444 7788999999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 222 DqV 224 (532)
T KOG1954|consen 222 DQV 224 (532)
T ss_pred ccc
Confidence 985
No 304
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1e-05 Score=62.80 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i-~~~l~~~~~ 76 (265)
+|.-|+|||-|+..+...+ +..+.+.+ ..+.-....++.|. ++.||||.|.. .+..+ +.+. +++
T Consensus 17 igdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqe--------rfravtrsyy--rga 84 (215)
T KOG0097|consen 17 IGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE--------RFRAVTRSYY--RGA 84 (215)
T ss_pred EccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHH--------HHHHHHHHHh--ccc
Confidence 5899999999999988765 23333222 11222223445554 56899999972 22333 3332 377
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
-..|+|+++....-...-..|+..-..+-.++ --++++.||+|+...++.++++
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee 138 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE 138 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH
Confidence 77888988875221122223333333333222 3467789999997677777765
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.22 E-value=6.8e-07 Score=76.81 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHH---HHHHHHhcCcCcCCcEEEEEeCc
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI---TRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~---l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+.++||||..+--... .....+-+.+.....-+++++ +|+..+.+....+ +-.+.-+. ....|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~--~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIML--RLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHH--HHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHh--hCCCCEEEeeecc
Confidence 58999999986542222 333344444443333456666 4554544322221 11222121 1228999999999
Q ss_pred cCCC
Q 024586 121 QLSL 124 (265)
Q Consensus 121 D~~~ 124 (265)
|+.+
T Consensus 167 Dl~~ 170 (238)
T PF03029_consen 167 DLLS 170 (238)
T ss_dssp GGS-
T ss_pred Cccc
Confidence 9963
No 306
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.22 E-value=3.4e-07 Score=70.31 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+++||+-|+-.+-... +-.+.+-++ ..+........++. ++.+|||.|...... ....+. +.+|
T Consensus 3 lgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs-------vt~ayy--rda~ 72 (192)
T KOG0083|consen 3 LGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS-------VTHAYY--RDAD 72 (192)
T ss_pred cccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh-------hhHhhh--cccc
Confidence 6999999998764433222 112222111 11111223344554 568999999843322 112122 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
++|+++++......++-..|+..|.+..... ..++++.||+|+.+.+.
T Consensus 73 allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~ 120 (192)
T KOG0083|consen 73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERA 120 (192)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhc
Confidence 9999998876445566778998888765433 56789999999975444
No 307
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.17 E-value=2.8e-05 Score=79.01 Aligned_cols=102 Identities=10% Similarity=0.028 Sum_probs=65.8
Q ss_pred CCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC------------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586 6 VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVNYHAIQLI 67 (265)
Q Consensus 6 ~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~v~iiDTPG~~~~~~~~~~~~~~i 67 (265)
++||||+.+|.+.+++. +...+.|.+.-.+....+. ..+++|||||..+. ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL 542 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence 57999999999988733 3333455544443333321 12799999996321 111
Q ss_pred HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
... ....+|++++|++++. .+...+...++.+... ..|+++|+||+|+.
T Consensus 543 r~~-g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~ 591 (1049)
T PRK14845 543 RKR-GGSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLI 591 (1049)
T ss_pred HHh-hcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCc
Confidence 111 1246899999977664 3666777777766553 27999999999985
No 308
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.16 E-value=3.9e-06 Score=74.19 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=60.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCc---
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVN--- 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~--- 60 (265)
||.++|||||+.|+|+..... ..+++.+|.++......+.. -.++++|..|+-.+....
T Consensus 26 VGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL 104 (391)
T KOG1491|consen 26 VGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL 104 (391)
T ss_pred eeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence 699999999999999998864 77888899887766544321 147999999997654433
Q ss_pred -HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586 61 -YHAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 61 -~~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
-..++.|+ .+|+++.|++..
T Consensus 105 GN~FLs~iR------~vDaifhVVr~f 125 (391)
T KOG1491|consen 105 GNKFLSHIR------HVDAIFHVVRAF 125 (391)
T ss_pred hHHHHHhhh------hccceeEEEEec
Confidence 36677776 779999997654
No 309
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.16 E-value=2.5e-05 Score=69.48 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=71.2
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEe
Q 024586 40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLT 118 (265)
Q Consensus 40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~t 118 (265)
-+.+++.|.||||.. ++...|..- ...+|+.+++ +|+.. +-++. .-...|....|- +++++.+|
T Consensus 83 T~KRkFIiADTPGHe-------QYTRNMaTG--ASTadlAIlL--VDAR~Gvl~QT-rRHs~I~sLLGI---rhvvvAVN 147 (431)
T COG2895 83 TEKRKFIIADTPGHE-------QYTRNMATG--ASTADLAILL--VDARKGVLEQT-RRHSFIASLLGI---RHVVVAVN 147 (431)
T ss_pred cccceEEEecCCcHH-------HHhhhhhcc--cccccEEEEE--EecchhhHHHh-HHHHHHHHHhCC---cEEEEEEe
Confidence 356789999999973 444444321 1356887777 35422 33332 233455566654 89999999
Q ss_pred CccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC--hHHHHHHH
Q 024586 119 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVKTI 196 (265)
Q Consensus 119 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~i 196 (265)
|+|+.+.++..+++.. +.+..+-.+-+... ...||+......+....+ ...+| =|.|++.+
T Consensus 148 KmDLvdy~e~~F~~I~----~dy~~fa~~L~~~~-----~~~IPiSAl~GDNV~~~s--------~~mpWY~GptLLe~L 210 (431)
T COG2895 148 KMDLVDYSEEVFEAIV----ADYLAFAAQLGLKD-----VRFIPISALLGDNVVSKS--------ENMPWYKGPTLLEIL 210 (431)
T ss_pred eecccccCHHHHHHHH----HHHHHHHHHcCCCc-----ceEEechhccCCcccccc--------cCCCcccCccHHHHH
Confidence 9999766654454443 33444444332111 123677655443333322 22456 46677765
Q ss_pred HHHh
Q 024586 197 TEVV 200 (265)
Q Consensus 197 ~~~~ 200 (265)
...-
T Consensus 211 E~v~ 214 (431)
T COG2895 211 ETVE 214 (431)
T ss_pred hhcc
Confidence 5443
No 310
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.14 E-value=1.7e-05 Score=82.44 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC--------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC----Cc----HHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF--------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY----VN----YHAI 64 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~--------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~----~~----~~~~ 64 (265)
||.+|+||||+++.- |.+. ..... .+.|.. +..-+. .+-.++||+|.+-... .+ ...+
T Consensus 117 iG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~---c~wwf~-~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 117 IGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRN---CDWWFT-DEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred ECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcc---cceEec-CCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 699999999999876 5542 22210 011111 111122 2456999999654322 11 2333
Q ss_pred HHHHHHHhcCCccEEEEEEecCCcC-CCHH--------HHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 65 QLIKRFLLNKTIDVLLYVDRLDVYR-VDNL--------DKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 65 ~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~--------d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+++.-....+|.||++++++.-- .+.. -+.-++.+.+.+|-. .|++||+||+|+.
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence 3444333345789999997765311 1222 223445566666654 8999999999975
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.9e-05 Score=77.32 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~--~~~~---------------~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|...+|||||.-+|+-..... .+.. .+.|......+..+.+ ..+++|||||..|... +
T Consensus 16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~---E 92 (697)
T COG0480 16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTI---E 92 (697)
T ss_pred EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHH---H
Confidence 3667899999999998432111 1111 1233344445677886 9999999999977542 2
Q ss_pred HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
....++ -.|..+.|++... .+..+....++...+.. .|.++++||+|..
T Consensus 93 V~rslr------vlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~ 141 (697)
T COG0480 93 VERSLR------VLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL 141 (697)
T ss_pred HHHHHH------hhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence 333333 5588888865553 46666677777777664 8999999999974
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.13 E-value=3.3e-05 Score=68.67 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=35.3
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHH-HHHHHhcCcCcCCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l-~~l~~~~g~~~~~~~ivV~tk 119 (265)
.|..+.|+||||.+... .+.+. .+|.++++.... ...+.+.+ +.+.+ ++.++|+||
T Consensus 125 ~g~D~viidT~G~~~~e------~~i~~------~aD~i~vv~~~~----~~~el~~~~~~l~~-------~~~ivv~NK 181 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE------VDIAN------MADTFVVVTIPG----TGDDLQGIKAGLME-------IADIYVVNK 181 (300)
T ss_pred CCCCEEEEeCCCCchhh------hHHHH------hhceEEEEecCC----ccHHHHHHHHHHhh-------hccEEEEEc
Confidence 36778999999986322 12222 458888883222 11232222 22221 678999999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
+|+.
T Consensus 182 ~Dl~ 185 (300)
T TIGR00750 182 ADGE 185 (300)
T ss_pred cccc
Confidence 9985
No 313
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.4e-05 Score=75.15 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=95.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc--------------cccc----------------CCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKA--------------VTVS----------------TFQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~--------------~~~~----------------~~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|...+|||||+-.|+-.-. +..+ ...+.|.......++-....++++|+
T Consensus 183 ~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDa 262 (603)
T KOG0458|consen 183 LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDA 262 (603)
T ss_pred EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecC
Confidence 58899999999988873200 0000 01123333333344445667899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCH------HHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN------LDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~------~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
||..+.. .. +|... ..+|+.++|++.+...|+. +.++.+. +.+.+|- ...||++||+|+..
T Consensus 263 PGhkdFi---~n---mi~g~---sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lgi---~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 263 PGHKDFI---PN---MISGA---SQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLGI---SQLIVAINKMDLVS 329 (603)
T ss_pred CCccccc---hh---hhccc---cccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcCc---ceEEEEeecccccC
Confidence 9975431 12 22211 2678888886655433322 2233333 3445553 78999999999964
Q ss_pred CCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC--hHHHHHHHHHHhhC
Q 024586 125 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVKTITEVVLN 202 (265)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~i~~~~~~ 202 (265)
.++..+++. ...+..++.+.++|...+ +.-||+.-.++.+...+. .+ +.-..| =+.|++.+....++
T Consensus 330 Wsq~RF~eI----k~~l~~fL~~~~gf~es~--v~FIPiSGl~GeNL~k~~--~~---~~l~~WY~Gp~LL~~id~~~~p 398 (603)
T KOG0458|consen 330 WSQDRFEEI----KNKLSSFLKESCGFKESS--VKFIPISGLSGENLIKIE--QE---NELSQWYKGPTLLSQIDSFKIP 398 (603)
T ss_pred ccHHHHHHH----HHHHHHHHHHhcCcccCC--cceEecccccCCcccccc--cc---hhhhhhhcCChHHHHHhhccCC
Confidence 443333333 355777774444444332 124666433322211110 11 112356 57888888886666
Q ss_pred CC
Q 024586 203 GS 204 (265)
Q Consensus 203 ~~ 204 (265)
+.
T Consensus 399 ~~ 400 (603)
T KOG0458|consen 399 ER 400 (603)
T ss_pred CC
Confidence 53
No 314
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=7.2e-06 Score=66.48 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|--|+||||+++.|--.+...+ ..|........++.+.++++||.-|...-....+.+. ...++++
T Consensus 23 lGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~---------~~t~~lI 89 (181)
T KOG0070|consen 23 VGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF---------QNTQGLI 89 (181)
T ss_pred EeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCcccccchhhhc---------cCCcEEE
Confidence 57889999999998876664333 2344444556777899999999998844333332222 3668999
Q ss_pred EEEecCC-cCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCCCCCCCCHHHH
Q 024586 81 YVDRLDV-YRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSLPDRLDYEVF 133 (265)
Q Consensus 81 ~V~~~d~-~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~~~~~~~~~~~ 133 (265)
||++..+ .|+.+ .-+.+.++.... ...|+++..||-|+ +...+..+.
T Consensus 90 fVvDS~Dr~Ri~e----ak~eL~~~l~~~~l~~~~llv~aNKqD~--~~als~~ei 139 (181)
T KOG0070|consen 90 FVVDSSDRERIEE----AKEELHRMLAEPELRNAPLLVFANKQDL--PGALSAAEI 139 (181)
T ss_pred EEEeCCcHHHHHH----HHHHHHHHHcCcccCCceEEEEechhhc--cccCCHHHH
Confidence 9944332 22322 333444444322 24789999999998 455555443
No 315
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.10 E-value=3.9e-05 Score=71.74 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=45.9
Q ss_pred EEEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586 44 TLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~------~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~ 117 (265)
.+.++|.||+..+-. ..+.+...-+.++ ..+++|++|+. +..++.+--.+-..+.++-..+ +++|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~G--rRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHG--RRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCC--CeeEEEE
Confidence 468999999987522 1223444444444 47899999953 2244443333334444443233 8999999
Q ss_pred eCccCCC
Q 024586 118 THAQLSL 124 (265)
Q Consensus 118 tk~D~~~ 124 (265)
||.|++.
T Consensus 487 TKVDlAE 493 (980)
T KOG0447|consen 487 TKVDLAE 493 (980)
T ss_pred eecchhh
Confidence 9999964
No 316
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.08 E-value=1.4e-06 Score=72.71 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.+|||||.. ..+.+.+++++.++....++-+++|.+... ...+...+....+.+ ...=+++||.|
T Consensus 83 ~~D~vlIDT~Gr~---~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~-----~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRS---PRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAF-----GIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSS---STHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred CCCEEEEecCCcc---hhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhcc-----cCceEEEEeec
Confidence 4568999999984 344566667776664446788888855543 234444455555554 34467799999
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 317
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=2.1e-05 Score=62.81 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|--++|||||++.|-..+.+.. ..|.+|......++|.+++.+|.-|.. ++....+.|+ +.+|+++
T Consensus 26 lGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf--~~v~~iv 92 (193)
T KOG0077|consen 26 LGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF--PQVDAIV 92 (193)
T ss_pred EeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--hhhceeE
Confidence 47789999999999887764322 246677777888999999999998862 3344445444 4778998
Q ss_pred EEEecCC-cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~-~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|.++.-+ .|+. +.+..++.+...- .-.+.|+++..||.|..
T Consensus 93 ~lvda~d~er~~-es~~eld~ll~~e-~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 93 YLVDAYDQERFA-ESKKELDALLSDE-SLATVPFLILGNKIDIP 134 (193)
T ss_pred eeeehhhHHHhH-HHHHHHHHHHhHH-HHhcCcceeecccccCC
Confidence 8855433 2232 2233333332211 01468999999999984
No 318
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.03 E-value=1.2e-05 Score=69.32 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHH---HHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK---QITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~---~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
..+.+|||||..+. +.....-..|...+....+-+++||+ |..|.+.-.. .++-+-.-++. ...|+|+|+||
T Consensus 116 ~~~~liDTPGQIE~-FtWSAsGsIIte~lass~ptvv~Yvv--Dt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK 190 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEA-FTWSASGSIITETLASSFPTVVVYVV--DTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNK 190 (366)
T ss_pred cCEEEEcCCCceEE-EEecCCccchHhhHhhcCCeEEEEEe--cCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEec
Confidence 34789999998773 11111112334444445788999994 4434222211 22222222221 22799999999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
+|+.
T Consensus 191 ~Dv~ 194 (366)
T KOG1532|consen 191 TDVS 194 (366)
T ss_pred cccc
Confidence 9985
No 319
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.02 E-value=7e-06 Score=71.84 Aligned_cols=62 Identities=27% Similarity=0.316 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHhCC-----CcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|-+|+|||||||++... ..+.+++.++.|..........+...+.++||||+..+...+.+
T Consensus 149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence 689999999999998753 34567777777766554344445567899999999888766654
No 320
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=4.2e-05 Score=63.59 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~i 79 (265)
+|.+++|||||.-.|..... ...+ +..++.......+...+++||.||.. .....+..++. ...+-+|
T Consensus 44 ~Gl~dSGKT~LF~qL~~gs~--~~Tv--tSiepn~a~~r~gs~~~~LVD~PGH~-------rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 44 VGLSDSGKTSLFTQLITGSH--RGTV--TSIEPNEATYRLGSENVTLVDLPGHS-------RLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred EecCCCCceeeeeehhcCCc--cCee--eeeccceeeEeecCcceEEEeCCCcH-------HHHHHHHHHccccccceeE
Confidence 59999999999988876532 1111 22333344455555668999999973 22333333332 2467788
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcC----cCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g----~~~~~~~ivV~tk~D~~~ 124 (265)
+|| +|+..+..+-+...+.+-...- ..-..|+++.-||.|+..
T Consensus 113 VFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 113 VFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 888 4544455555555555444332 223478999999999853
No 321
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=5.6e-06 Score=75.50 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=44.9
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.||||||-. ..+...++++.+.+....+|.+++| +++..-...-..+++.+.. ....=+++||.|
T Consensus 320 ~~DvVLIDTaGRs---~kd~~lm~EL~~~lk~~~PdevlLV--LsATtk~~d~~~i~~~F~~------~~idglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKD------IHIDGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCcccc---CcCHHHHHHHHHHHhhcCCCeEEEE--ECCccChHHHHHHHHHhcC------CCCCEEEEEccc
Confidence 4578999999984 3445566777777655567888888 4432211222344444433 145678899999
Q ss_pred CCC
Q 024586 122 LSL 124 (265)
Q Consensus 122 ~~~ 124 (265)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 853
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=5.9e-05 Score=68.64 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=44.4
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.+|||||.. ..+.+.++++..+.....+|.+++| +++. ... .++.+.+.. |.. ....-+++||.|
T Consensus 285 ~~D~VLIDTAGr~---~~d~~~l~EL~~l~~~~~p~~~~LV--Lsag-~~~--~d~~~i~~~-f~~--l~i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRN---YLAEESVSEISAYTDVVHPDLTCFT--FSSG-MKS--ADVMTILPK-LAE--IPIDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCC---ccCHHHHHHHHHHhhccCCceEEEE--CCCc-ccH--HHHHHHHHh-cCc--CCCCEEEEEccc
Confidence 4678999999984 3456677777776655567887788 4431 222 233333322 432 245678899999
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
..
T Consensus 354 ET 355 (407)
T PRK12726 354 ET 355 (407)
T ss_pred CC
Confidence 85
No 323
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.94 E-value=4e-05 Score=64.56 Aligned_cols=113 Identities=20% Similarity=0.239 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------c
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------N 73 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~ 73 (265)
+|+||+||||+--.++..-.+.-....+.|.+....+..+-| .-+.+||.-|.. . .|+.++. -
T Consensus 10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------~---fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------E---FMENYLSSQEDNIF 79 (295)
T ss_pred eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------H---HHHHHHhhcchhhh
Confidence 699999999998888755433333334445555544555545 678999987762 1 1222221 1
Q ss_pred CCccEEEEEEecCCcCCCHHH---HHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 74 KTIDVLLYVDRLDVYRVDNLD---KQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 74 ~~~d~iL~V~~~d~~r~~~~d---~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
...++++||.++....+...- ...++.+.+.-. --.+.+.++|.|+...+
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP---~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP---EAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC---cceEEEEEeechhcccc
Confidence 367999999877764343322 233444444322 25678888999996433
No 324
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.92 E-value=2.2e-05 Score=68.87 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i 114 (265)
.+..+.+|||||... .+...+++++.+.. ...+|-+++|++... ...+........+.. ...-
T Consensus 153 ~~~D~ViIDT~G~~~---~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQ---NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCc---chHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhC-----CCCE
Confidence 456789999999854 24444555554432 224788888965542 333333334444333 4568
Q ss_pred EEEeCccCCC
Q 024586 115 IVLTHAQLSL 124 (265)
Q Consensus 115 vV~tk~D~~~ 124 (265)
+|+||.|...
T Consensus 222 ~IlTKlDe~~ 231 (272)
T TIGR00064 222 IILTKLDGTA 231 (272)
T ss_pred EEEEccCCCC
Confidence 8999999853
No 325
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=3.6e-05 Score=70.15 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCc---CCcEEEEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI---WKRALIVL 117 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~---~~~~ivV~ 117 (265)
.+..+.+|||||... .+....+.+........++-.++|++... . .+.-.++++.+....+... ....=+|+
T Consensus 214 ~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAts-~-~~~l~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNATS-H-GDTLNEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred cCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCcc-C-hHHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence 456789999999843 33344444443322223444566643332 1 1222344555555433110 11346788
Q ss_pred eCccCC
Q 024586 118 THAQLS 123 (265)
Q Consensus 118 tk~D~~ 123 (265)
||.|..
T Consensus 289 TKlDEt 294 (374)
T PRK14722 289 TKLDEA 294 (374)
T ss_pred eccccC
Confidence 999985
No 326
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.89 E-value=5.2e-06 Score=67.03 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-CCCCccEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-HHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-SEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~-~~t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~-~l~~~~~ 76 (265)
+|..++||||+|.++...-. +.++. ............ ..+..+.+|||.|..+. +.|.+ +. +|+
T Consensus 26 vGng~VGKssmiqryCkgif--TkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------DaItkAyy--rga 93 (246)
T KOG4252|consen 26 VGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------DAITKAYY--RGA 93 (246)
T ss_pred ECCCccchHHHHHHHhcccc--ccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH--------HHHHHHHh--ccc
Confidence 58999999999999996532 11111 111111111122 22345578999997433 23322 12 477
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+.++|++-.+....+....+.+.+++..+. .|+++|-||.|+.
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLV 137 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhh
Confidence 8888886655422335556777788777765 8999999999995
No 327
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=0.0002 Score=64.11 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i 114 (265)
.+..+.||||||.... +...+++++.... ...+|-.++|++... ...+..-.....+.. ...-
T Consensus 195 ~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~~g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GLTG 263 (318)
T ss_pred CCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CCCE
Confidence 3457899999998543 2333334433321 235677788854442 222222223322222 4668
Q ss_pred EEEeCccCC
Q 024586 115 IVLTHAQLS 123 (265)
Q Consensus 115 vV~tk~D~~ 123 (265)
+|+||.|..
T Consensus 264 iIlTKlD~t 272 (318)
T PRK10416 264 IILTKLDGT 272 (318)
T ss_pred EEEECCCCC
Confidence 999999975
No 328
>PRK14974 cell division protein FtsY; Provisional
Probab=97.83 E-value=2.4e-05 Score=70.50 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.+|||+|... .+...+++++.....-.+|.+++|.+... .......++...+.. ...-+++||.|
T Consensus 222 ~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~-----~~~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAV-----GIDGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcC-----CCCEEEEeeec
Confidence 45689999999853 33455566665544446888889954432 222223333333332 45678999999
Q ss_pred CCC
Q 024586 122 LSL 124 (265)
Q Consensus 122 ~~~ 124 (265)
...
T Consensus 291 ~~~ 293 (336)
T PRK14974 291 ADA 293 (336)
T ss_pred CCC
Confidence 864
No 329
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=5e-05 Score=60.27 Aligned_cols=111 Identities=20% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC---CCCCccEEEEeee-------CC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ---SEGPRPVMVSRSR-------AG--FTLNIVDTPGLIEGGYVNYHAIQLIK 68 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~---~~t~~~~~~~~~~-------~g--~~v~iiDTPG~~~~~~~~~~~~~~i~ 68 (265)
+|.+||||+|++-.....+. .+.+- +...+........ .+ ..+.+|||.|... ..+...
T Consensus 15 LGDSGVGKTs~Ly~YTD~~F--~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER-------FRSLTT 85 (219)
T KOG0081|consen 15 LGDSGVGKTSFLYQYTDGKF--NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER-------FRSLTT 85 (219)
T ss_pred hccCCCCceEEEEEecCCcc--cceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH-------HHHHHH
Confidence 59999999999877665542 11111 0111111111111 11 2568999999732 222222
Q ss_pred HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcC-cCcCCcEEEEEeCccCCC
Q 024586 69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g-~~~~~~~ivV~tk~D~~~ 124 (265)
.++ +.+=.+|+++++......-+.+.|+..++...- ++ .-+++..||+|+.+
T Consensus 86 AFf--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 86 AFF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLED 138 (219)
T ss_pred HHH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhh
Confidence 222 244567888778765544556788888775432 33 56899999999943
No 330
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00018 Score=56.05 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|-+++||||++-.|.-... +... .|.........+....+++||.-|.. .+....+++. ++..+++
T Consensus 23 lGLd~aGKTtiLyKLkl~~~--~~~i--pTvGFnvetVtykN~kfNvwdvGGqd-------~iRplWrhYy--~gtqglI 89 (180)
T KOG0071|consen 23 LGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQD-------KIRPLWRHYY--TGTQGLI 89 (180)
T ss_pred EecccCCceehhhHHhcCCC--cccc--cccceeEEEEEeeeeEEeeeeccCch-------hhhHHHHhhc--cCCceEE
Confidence 58899999999988875542 1111 23333445677888899999998863 2222333333 4778888
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCc-Cc-CCcEEEEEeCccCCCCCCCCHHH
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGE-QI-WKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~-~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
||++..+ + +.. .+.-+++.++.+. ++ --+++|..||-|+ ++..++.+
T Consensus 90 FV~Dsa~-~-dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDl--p~A~~pqe 138 (180)
T KOG0071|consen 90 FVVDSAD-R-DRI-EEARNELHRIINDREMRDAIILILANKQDL--PDAMKPQE 138 (180)
T ss_pred EEEeccc-h-hhH-HHHHHHHHHHhCCHhhhcceEEEEecCccc--ccccCHHH
Confidence 8844322 1 222 2333444454443 22 2456778899998 45555543
No 331
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00018 Score=68.03 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+||||++..|..
T Consensus 356 VGPtGvGKTTtaakLAa 372 (559)
T PRK12727 356 VGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988875
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00021 Score=62.41 Aligned_cols=166 Identities=15% Similarity=0.191 Sum_probs=91.3
Q ss_pred CCCCCCCHHHHHHHHhCCCc---------------ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA---------------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~---------------~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.-.-|||||.-+|.+.-. ++.....+.|..+....++-..+.+..+|.||..| +.+
T Consensus 18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-------YvK 90 (394)
T COG0050 18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-------YVK 90 (394)
T ss_pred eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-------HHH
Confidence 57778899999999885310 11111123444555556677889999999999843 332
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHH
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV 145 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i 145 (265)
.+-. -....|..++|+..++....+.-..+| |.+..|- +++++.+||+|+. ++...-+.+ .-.+++++
T Consensus 91 NMIt--gAaqmDgAILVVsA~dGpmPqTrEHiL--larqvGv---p~ivvflnK~Dmv--dd~ellelV---emEvreLL 158 (394)
T COG0050 91 NMIT--GAAQMDGAILVVAATDGPMPQTREHIL--LARQVGV---PYIVVFLNKVDMV--DDEELLELV---EMEVRELL 158 (394)
T ss_pred HHhh--hHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcCC---cEEEEEEeccccc--CcHHHHHHH---HHHHHHHH
Confidence 2211 112557777776666544333322222 3344443 6889999999995 232233333 35566766
Q ss_pred hccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHhh
Q 024586 146 SPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL 201 (265)
Q Consensus 146 ~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~~ 201 (265)
...+. .-...|+..-+.- +.|.....| +.+|++.+.+..+
T Consensus 159 s~y~f------~gd~~Pii~gSal----------~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 159 SEYGF------PGDDTPIIRGSAL----------KALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred HHcCC------CCCCcceeechhh----------hhhcCCcchHHHHHHHHHHHHhcCC
Confidence 55431 1123566433321 344444557 4555555555443
No 333
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.79 E-value=0.00012 Score=57.12 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|-.++||+|++..|-++++....+ |........+.+| +.++|||.-|...-..-...+. ...|.+
T Consensus 23 lGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYy---------envd~l 89 (185)
T KOG0074|consen 23 LGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYY---------ENVDGL 89 (185)
T ss_pred EecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccccchhhhhhh---------hccceE
Confidence 4778999999999999998644332 2223344556666 8999999988743322222222 277999
Q ss_pred EEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+||++..+.. +.+...+..+.+.... -...|+.+-.||-|+.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdll 132 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLL 132 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHH
Confidence 9996543322 3332333333333221 1236777777877773
No 334
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.0001 Score=68.25 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.+|||+|... .+....+.++.+......+-.++|+ +++. .. +.+..+...|.. ....=+++||.
T Consensus 268 ~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl--~at~-~~---~~~~~~~~~f~~--~~~~~~I~TKl 336 (420)
T PRK14721 268 RGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLL--NATS-SG---DTLDEVISAYQG--HGIHGCIITKV 336 (420)
T ss_pred cCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEE--cCCC-CH---HHHHHHHHHhcC--CCCCEEEEEee
Confidence 455689999999843 3344555555543223344555663 4321 12 223333344432 14556889999
Q ss_pred cCCC
Q 024586 121 QLSL 124 (265)
Q Consensus 121 D~~~ 124 (265)
|...
T Consensus 337 DEt~ 340 (420)
T PRK14721 337 DEAA 340 (420)
T ss_pred eCCC
Confidence 9853
No 335
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.74 E-value=7.1e-05 Score=68.20 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=42.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~-~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
...+.+|||.|. +..+....++++.++... ..++.|.+ +.+. . .+-++.+-+.|+. ...-=+++||.
T Consensus 281 ~~d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvl-sat~---K---~~dlkei~~~f~~--~~i~~~I~TKl 348 (407)
T COG1419 281 DCDVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVL-SATT---K---YEDLKEIIKQFSL--FPIDGLIFTKL 348 (407)
T ss_pred cCCEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEE-ecCc---c---hHHHHHHHHHhcc--CCcceeEEEcc
Confidence 456899999998 456677888888877443 44444443 3332 1 2233444444432 14445778999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 349 DET 351 (407)
T COG1419 349 DET 351 (407)
T ss_pred ccc
Confidence 975
No 336
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.0002 Score=66.20 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHhCCCcccc--------------cCCCCCCCccEEEEeee---CC--eEEEEEeCCCCCCCCCCcHHHHH
Q 024586 5 GVGKSSTVNSIIGEKAVTV--------------STFQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 5 g~GKSSliN~llg~~~~~~--------------~~~~~~t~~~~~~~~~~---~g--~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
.-|||||...|+....... ..-.+.|.........+ +| ..+++|||||.-|....- ..
T Consensus 19 DHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEV---SR 95 (603)
T COG0481 19 DHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEV---SR 95 (603)
T ss_pred cCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEe---hh
Confidence 4699999999996532110 01123343333333322 22 457999999998765422 23
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+.. +...|+|+ |+.. --+.+.+.-.--.+..+ --+|.|+||.|+.
T Consensus 96 SLAA------CEGalLvV--DAsQ--GveAQTlAN~YlAle~~--LeIiPViNKIDLP 141 (603)
T COG0481 96 SLAA------CEGALLVV--DASQ--GVEAQTLANVYLALENN--LEIIPVLNKIDLP 141 (603)
T ss_pred hHhh------CCCcEEEE--ECcc--chHHHHHHHHHHHHHcC--cEEEEeeecccCC
Confidence 3342 34555553 4322 22333333333333222 5689999999994
No 337
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00011 Score=72.50 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCc-CCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~-~~~~ivV~tk 119 (265)
.+..+.||||||... .+....+++........++-+++|+ ++.. . .+.++.+.+.|.... ....=+|+||
T Consensus 262 ~~~D~VLIDTAGRs~---~d~~l~eel~~l~~~~~p~e~~LVL--sAt~-~---~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 262 GDKHLVLIDTVGMSQ---RDRNVSEQIAMLCGVGRPVRRLLLL--NAAS-H---GDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred cCCCEEEEeCCCCCc---cCHHHHHHHHHHhccCCCCeEEEEE--CCCC-c---HHHHHHHHHHHhhcccCCCCEEEEec
Confidence 345689999999743 3344555555443334566677774 4321 1 222333333332110 0244678999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
.|..
T Consensus 333 LDEt 336 (767)
T PRK14723 333 LDEA 336 (767)
T ss_pred cCCC
Confidence 9985
No 338
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00025 Score=68.55 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee------------------CCeEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|.-.+|||-|+..|-+.++ ..+...+.|...-...+.. .-.-+.+|||||..
T Consensus 481 lGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE-------- 551 (1064)
T KOG1144|consen 481 LGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE-------- 551 (1064)
T ss_pred eecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch--------
Confidence 57888999999999999876 4444334443322111111 11136899999963
Q ss_pred HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
.+..+++.- +.-+|+.++|+++-. .+.....+-+..|.... -|+||.+||.|.
T Consensus 552 sFtnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~rk-----tpFivALNKiDR 604 (1064)
T KOG1144|consen 552 SFTNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMRK-----TPFIVALNKIDR 604 (1064)
T ss_pred hhhhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence 233333321 124688888866542 36666666666665543 799999999985
No 339
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00049 Score=63.03 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHh--CCCcc-------------cccCC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586 3 KGGVGKSSTVNSII--GEKAV-------------TVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 3 ~tg~GKSSliN~ll--g~~~~-------------~~~~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~ 61 (265)
.+.+|||||--.|+ |.... ..|+. .+.+......+..+++..+++.||||..|.. +
T Consensus 20 HPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFS---E 96 (528)
T COG4108 20 HPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFS---E 96 (528)
T ss_pred cCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccc---h
Confidence 57899999997776 32110 11110 0111123344677889999999999997643 2
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
+....+. .+|..++|++.. ..+.....++++...-.. .|++-.+||.|.
T Consensus 97 DTYRtLt------AvDsAvMVIDaA-KGiE~qT~KLfeVcrlR~-----iPI~TFiNKlDR 145 (528)
T COG4108 97 DTYRTLT------AVDSAVMVIDAA-KGIEPQTLKLFEVCRLRD-----IPIFTFINKLDR 145 (528)
T ss_pred hHHHHHH------hhheeeEEEecc-cCccHHHHHHHHHHhhcC-----CceEEEeecccc
Confidence 3323332 579999994432 237777777766544332 899999999996
No 340
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0016 Score=58.20 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=82.2
Q ss_pred CCCCCCCHHHHHHHHhCC--CcccccCCCCCCCccEEE----Eee-------e--CCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGE--KAVTVSTFQSEGPRPVMV----SRS-------R--AGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~--~~~~~~~~~~~t~~~~~~----~~~-------~--~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.-.+||+||..+|..- ..++-...+++++..... ... . ...+++++|.||.. .
T Consensus 13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----------s 82 (522)
T KOG0461|consen 13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----------S 82 (522)
T ss_pred EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----------H
Confidence 477889999999998743 222211112222211110 000 1 12356999999972 1
Q ss_pred HHHHHHh-cCCccEEEEEEecCCcCCC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHH
Q 024586 66 LIKRFLL-NKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLK 143 (265)
Q Consensus 66 ~i~~~l~-~~~~d~iL~V~~~d~~r~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~ 143 (265)
.|+..+- +.-+|..++|+++....-+ ..+.-++..+ ..++.++|+||.|..+... ...-+++-...+++
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~q--r~ski~k~~kk~~K 153 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQ--RASKIEKSAKKVRK 153 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchh--hhhHHHHHHHHHHH
Confidence 3333331 1346888888665542222 1222222222 2378899999998864321 11112211233344
Q ss_pred HHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhC
Q 024586 144 FVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN 202 (265)
Q Consensus 144 ~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~ 202 (265)
-++..+ |.. ..|++.++..+.+...++ +++|.+.+.++...
T Consensus 154 tLe~t~-f~g------~~PI~~vsa~~G~~~~~~-----------i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 154 TLESTG-FDG------NSPIVEVSAADGYFKEEM-----------IQELKEALESRIFE 194 (522)
T ss_pred HHHhcC-cCC------CCceeEEecCCCccchhH-----------HHHHHHHHHHhhcC
Confidence 443322 211 256666665544444333 77777777766643
No 341
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.61 E-value=1.8e-05 Score=71.30 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
||-+++||||+||+|-..++..+.+.++.|.-=+. .---+.+.+||+||+.-+.
T Consensus 313 iGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY---ItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 313 IGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY---ITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred ecCCCCchHHHHHHHhhcccccccCCCCcchHHHH---HHHHhceeEecCCCccCCC
Confidence 69999999999999999999999988888753221 1112568899999986443
No 342
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00053 Score=62.85 Aligned_cols=109 Identities=20% Similarity=0.154 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHhCCCcc--cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 2 GKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~--~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
|.---|||||+.++.|.... +.....++|.+...+.....+..+.+||.||..+ .....+. ...++|..
T Consensus 7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~------~i~~mia---g~~~~d~a 77 (447)
T COG3276 7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD------FISNLLA---GLGGIDYA 77 (447)
T ss_pred eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH------HHHHHHh---hhcCCceE
Confidence 45567999999999997532 2222345666666777777777899999999832 1222222 11478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++.|. .+..+..+.+..+ +.+|- ++.++|+||+|..+
T Consensus 78 lLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~d 117 (447)
T COG3276 78 LLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVD 117 (447)
T ss_pred EEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEecccccc
Confidence 99976653 4667766666555 45554 78899999999863
No 343
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.61 E-value=0.00022 Score=62.33 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=43.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.+|||||-. ..+.+.++++..++....+|-+++|.+.. .-...-.++++. |.. ....=+++||.|
T Consensus 154 ~~D~ViIDt~Gr~---~~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~~~----f~~--~~~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITN----FKD--IHIDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCC---cCCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHHHH----hCC--CCCCEEEEEeec
Confidence 5678999999984 33445566666665444677788884332 111222233333 332 255678899999
Q ss_pred CCC
Q 024586 122 LSL 124 (265)
Q Consensus 122 ~~~ 124 (265)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 853
No 344
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.60 E-value=0.00019 Score=61.86 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk 119 (265)
.|+.+.||.|.|.+... . .+. .-+|.+++|....... +.+.++. +.++ .=++|+||
T Consensus 120 aG~D~IiiETVGvGQsE------~-~I~-----~~aD~~v~v~~Pg~GD----~iQ~~KaGimEi-------aDi~vVNK 176 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSE------V-DIA-----DMADTVVLVLVPGLGD----EIQAIKAGIMEI-------ADIFVVNK 176 (266)
T ss_dssp TT-SEEEEEEESSSTHH------H-HHH-----TTSSEEEEEEESSTCC----CCCTB-TTHHHH--------SEEEEE-
T ss_pred cCCCEEEEeCCCCCccH------H-HHH-----HhcCeEEEEecCCCcc----HHHHHhhhhhhh-------ccEEEEeC
Confidence 46779999999996421 1 222 3679999996555322 1122211 2222 23899999
Q ss_pred ccC
Q 024586 120 AQL 122 (265)
Q Consensus 120 ~D~ 122 (265)
+|.
T Consensus 177 aD~ 179 (266)
T PF03308_consen 177 ADR 179 (266)
T ss_dssp -SH
T ss_pred CCh
Confidence 995
No 345
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.60 E-value=3.4e-05 Score=69.63 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
||-+++||||+||+|....+..++..++.|+.-... .-+..+.++|.||+.-..
T Consensus 258 iG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV---~Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 258 IGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEV---KLDKKIRLLDSPGIVPPS 311 (435)
T ss_pred ecCCCCChhHHHHHHHHhccccCCCCccchhhhhhe---eccCCceeccCCceeecC
Confidence 689999999999999999988888888777643322 234678999999986543
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.59 E-value=0.0013 Score=53.29 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.|+||||... .+...++.+..+.....++.+++|++... .....+.+..+.+..+ -.-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~---~~~~~l~~l~~l~~~~~~~~~~lVv~~~~---~~~~~~~~~~~~~~~~-----~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAMT---GQDAVNQAKAFNEALG-----ITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccch---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence 55689999999842 23455556655443345788888965432 2233344444444332 3577889999
Q ss_pred CCC
Q 024586 122 LSL 124 (265)
Q Consensus 122 ~~~ 124 (265)
...
T Consensus 151 ~~~ 153 (173)
T cd03115 151 GDA 153 (173)
T ss_pred CCC
Confidence 853
No 347
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.56 E-value=0.00022 Score=57.40 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|..|+||||+++.+++.
T Consensus 6 ~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 6 TGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EECCCCCHHHHHHHHHhc
Confidence 489999999999999875
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=9.6e-05 Score=68.78 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=37.4
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
+..+.||||||.. ..+....+.+..++. ....+-.++|++... ... .++.+.+.|..- ...-+++||.
T Consensus 299 ~~DlVlIDt~G~~---~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~---~~~---~l~~~~~~f~~~--~~~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGRS---QRDKRLIEELKALIEFSGEPIDVYLVLSATT---KYE---DLKDIYKHFSRL--PLDGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCCC---CCCHHHHHHHHHHHhccCCCCeEEEEEECCC---CHH---HHHHHHHHhCCC--CCCEEEEecc
Confidence 4578999999984 334444555555554 222334445533321 222 223333333321 2346889999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 368 Det 370 (424)
T PRK05703 368 DET 370 (424)
T ss_pred ccc
Confidence 974
No 349
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00068 Score=62.29 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc-EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID-VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d-~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
.+..+.+|||||... .+...+.++...+....++ -.++|++... ...+ +.+.+.+ |.. ....=+++||
T Consensus 253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~--~~~~~~~-~~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSD--VKEIFHQ-FSP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHH--HHHHHHH-hcC--CCCCEEEEEe
Confidence 456789999999853 3444466666666433322 4566643332 1222 2233333 321 1456788999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9985
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=6.1e-05 Score=69.41 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN---KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~---~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~ 117 (265)
.+..+.+|||||... .+...++.+..++.. ..++-.++|++... ...+ +..+.+.|.. ....=+|+
T Consensus 298 ~~~D~VLIDTaGr~~---rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~---~~~~---~~~~~~~f~~--~~~~glIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSH---RNLEQLERMQSFYSCFGEKDSVENLLVLSSTS---SYHH---TLTVLKAYES--LNYRRILL 366 (432)
T ss_pred CCCCEEEEeCCCCCc---cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC---CHHH---HHHHHHHhcC--CCCCEEEE
Confidence 356789999999843 233455555555422 22345556643332 1212 2233333321 14567889
Q ss_pred eCccCC
Q 024586 118 THAQLS 123 (265)
Q Consensus 118 tk~D~~ 123 (265)
||.|..
T Consensus 367 TKLDEt 372 (432)
T PRK12724 367 TKLDEA 372 (432)
T ss_pred EcccCC
Confidence 999985
No 351
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.00013 Score=67.95 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=41.7
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
..+.||||||.. ..++..+++++.....-.+|.+++|++... .. ..++.... |.+.. ...-+|+||.|.
T Consensus 176 ~DvVIIDTAGr~---~~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~l-~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRH---ALEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEAV-GIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcc---cchHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhcC-CCCEEEEecccC
Confidence 468999999984 335566666666544346788888855432 12 23333322 33211 345678899986
Q ss_pred C
Q 024586 123 S 123 (265)
Q Consensus 123 ~ 123 (265)
.
T Consensus 245 ~ 245 (437)
T PRK00771 245 T 245 (437)
T ss_pred C
Confidence 4
No 352
>PRK01889 GTPase RsgA; Reviewed
Probab=97.47 E-value=6.2e-05 Score=68.53 Aligned_cols=54 Identities=30% Similarity=0.500 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
+|.+|+|||||+|+|+|.....++... .+|......... ++ ..++||||+.+..
T Consensus 201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~-~~--~~l~DtpG~~~~~ 261 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP-SG--GLLIDTPGMRELQ 261 (356)
T ss_pred ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec-CC--CeecCCCchhhhc
Confidence 699999999999999997643333321 122221111111 12 2588999996543
No 353
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0011 Score=58.51 Aligned_cols=125 Identities=20% Similarity=0.234 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~-~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+.+.++|.||. +. .|...|+.. --|..|+|+..+......+.++.+-+|.=+ |- +++|+|=||.|
T Consensus 86 R~VSfVDaPGH--------e~--LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gi---k~iiIvQNKID 151 (415)
T COG5257 86 RRVSFVDAPGH--------ET--LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GI---KNIIIVQNKID 151 (415)
T ss_pred EEEEEeeCCch--------HH--HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-cc---ceEEEEecccc
Confidence 46899999997 22 223333221 237888886555433445555555555432 22 89999999999
Q ss_pred CCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhh
Q 024586 122 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL 201 (265)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~ 201 (265)
+.. ++...++| +.+++|++-... .+.|++.++.. ...| +..|++.|.+..+
T Consensus 152 lV~-~E~AlE~y-----~qIk~FvkGt~A--------e~aPIIPiSA~--~~~N-------------IDal~e~i~~~Ip 202 (415)
T COG5257 152 LVS-RERALENY-----EQIKEFVKGTVA--------ENAPIIPISAQ--HKAN-------------IDALIEAIEKYIP 202 (415)
T ss_pred eec-HHHHHHHH-----HHHHHHhccccc--------CCCceeeehhh--hccC-------------HHHHHHHHHHhCC
Confidence 963 22233333 456777754321 12344444432 1112 8999999999887
Q ss_pred CCCcceecc
Q 024586 202 NGSKALLVD 210 (265)
Q Consensus 202 ~~~~~~~~~ 210 (265)
.-.|.+-..
T Consensus 203 tP~rd~~~~ 211 (415)
T COG5257 203 TPERDLDKP 211 (415)
T ss_pred CCccCCCCC
Confidence 766654444
No 354
>PRK10867 signal recognition particle protein; Provisional
Probab=97.39 E-value=0.0013 Score=61.21 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.|+||||... .++...+++......-.++-+++|+ |+. .........+.+.+.. ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVl--da~-~gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVV--DAM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEE--ecc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45689999999743 3444455554443333677778884 431 1223333444444322 34567889998
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 64
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0014 Score=61.87 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
||++|+||||||.+|...-- ...+...+ +. ....-.-+.+++..+|.- -. .+++..+ -+|++
T Consensus 75 vGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~----~miDvaK------IaDLV 137 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LH----QMIDVAK------IADLV 137 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HH----HHHhHHH------hhhee
Confidence 69999999999999987521 01111111 11 112223367899999831 11 2222222 45999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|+.++.. ..|.-+..+++..+.... +.+++-|+||.|+.
T Consensus 138 lLlIdgn-fGfEMETmEFLnil~~HG----mPrvlgV~ThlDlf 176 (1077)
T COG5192 138 LLLIDGN-FGFEMETMEFLNILISHG----MPRVLGVVTHLDLF 176 (1077)
T ss_pred EEEeccc-cCceehHHHHHHHHhhcC----CCceEEEEeecccc
Confidence 8884322 246666777777666543 36789999999996
No 356
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00089 Score=68.78 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHhCCCc--ccccCCCCCCCc-cEEEEeeeCCeEEEEEeCCCCCCCCC----CcH----HHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPR-PVMVSRSRAGFTLNIVDTPGLIEGGY----VNY----HAIQLIKR 69 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~--~~~~~~~~~t~~-~~~~~~~~~g~~v~iiDTPG~~~~~~----~~~----~~~~~i~~ 69 (265)
||.+|+||||++.. .|.+. .......+.... +..|.. +-+..-.+|||.|-.-... .+. ..+..+++
T Consensus 131 iG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk 208 (1188)
T COG3523 131 IGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK 208 (1188)
T ss_pred ecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence 69999999999854 23321 111111111111 111221 2233557999999654332 121 23333444
Q ss_pred HHhcCCccEEEEEEecCCc-CCCHHHH-HH-------HHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 70 FLLNKTIDVLLYVDRLDVY-RVDNLDK-QI-------TRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 70 ~l~~~~~d~iL~V~~~d~~-r~~~~d~-~~-------l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+-..+..|.|++.+++.+- ..+..+. .. +++|.+.++ +..|++|++||+|+.+
T Consensus 209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP 270 (1188)
T ss_pred hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence 4344678999999776531 1223322 11 334444443 4489999999999863
No 357
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.29 E-value=0.004 Score=48.81 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHhCC------CcccccC-CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586 2 GKGGVGKSSTVNSIIGE------KAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 74 (265)
Q Consensus 2 G~tg~GKSSliN~llg~------~~~~~~~-~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (265)
|++|+|||++.-.+... .+..+.. .+.... ...+.|+|||+..+ +.....+.
T Consensus 7 ~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~-----~~~~~~l~------ 65 (139)
T cd02038 7 GKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGIS-----DNVLDFFL------ 65 (139)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCC-----HHHHHHHH------
Confidence 68999999987665532 1111111 111111 15688999998532 22333333
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
.+|.+++|.+.+...+. .-..+++.+.+..+ ..++.+|+|+.+.
T Consensus 66 ~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 66 AADEVIVVTTPEPTSIT-DAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred hCCeEEEEcCCChhHHH-HHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 66999999555432111 12345556654332 2578899999874
No 358
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.00046 Score=65.00 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
||.+|+||||++..|.+.
T Consensus 262 vGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred ECCCCccHHHHHHHHHHH
Confidence 699999999999998863
No 359
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0021 Score=61.76 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-----CCCCCC-------ccEE----EEe---eeCCe--EEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST-----FQSEGP-------RPVM----VSR---SRAGF--TLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~-----~~~~t~-------~~~~----~~~---~~~g~--~v~iiDTPG~~~~~~~ 59 (265)
+|.-+.|||+|+..|.++..-..+. ...++. .+.. .+. ...|. -++++||||.-+. .
T Consensus 134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF--~ 211 (971)
T KOG0468|consen 134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF--S 211 (971)
T ss_pred eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccc--h
Confidence 4778999999999999875421110 000100 0000 001 11222 3689999998543 2
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
+ +....++ -+|++++|+++-. .+.-....+++..-+.- .++++|+||.|.
T Consensus 212 D-E~ta~l~------~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~-----~~i~vviNKiDR 261 (971)
T KOG0468|consen 212 D-ETTASLR------LSDGVVLVVDVAE-GVMLNTERIIKHAIQNR-----LPIVVVINKVDR 261 (971)
T ss_pred H-HHHHHhh------hcceEEEEEEccc-CceeeHHHHHHHHHhcc-----CcEEEEEehhHH
Confidence 2 2222333 5699988865543 34434444554433332 899999999986
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.15 E-value=0.0034 Score=58.50 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=41.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.|+||||... .++....++..+...-.+|-+++|++.. .........+.+.+.. ...=+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 45689999999743 3445555555544334678888884432 1233333444444332 34567799998
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
..
T Consensus 251 ~~ 252 (428)
T TIGR00959 251 GD 252 (428)
T ss_pred Cc
Confidence 64
No 361
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.12 E-value=0.0057 Score=45.65 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHhCC-------CcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586 2 GKGGVGKSSTVNSIIGE-------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 74 (265)
Q Consensus 2 G~tg~GKSSliN~llg~-------~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (265)
++.|+||||+.-.|... ++.-...-+.. +-.+.|+|||+..+. .....+.
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~-----~~~~~l~------ 63 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE-----VSLAALD------ 63 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH-----HHHHHHH------
Confidence 58999999987666542 11111110000 116889999996431 2222333
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
.+|.++++...+.... ..-..+++.+.+...+ ...++.+|+|+
T Consensus 64 ~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 64 QADRVFLVTQQDLPSI-RNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred HcCeEEEEecCChHHH-HHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 5699999965553221 2223445555544322 12467788875
No 362
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.08 E-value=0.00031 Score=60.26 Aligned_cols=111 Identities=21% Similarity=0.293 Sum_probs=72.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~~ 76 (265)
+|-+.+||||+++-|.|..- ++..+..+|-........+.|-++.+.|.||+.++.... .+.+.. ++.+
T Consensus 65 vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav------artc 137 (358)
T KOG1487|consen 65 VGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV------ARTC 137 (358)
T ss_pred EecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE------eecc
Confidence 47789999999999999753 455555666666666667889999999999999864332 222222 2466
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCc-CCcEEEEEeCcc
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTHAQ 121 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~-~~~~ivV~tk~D 121 (265)
+++++|.++- . .-..+++++.-.+.||-.. ..|--+.+.|.|
T Consensus 138 nli~~vld~~--k-p~~hk~~ie~eleg~girlnk~pp~i~~kkKd 180 (358)
T KOG1487|consen 138 NLIFIVLDVL--K-PLSHKKIIEKELEGFGIRLNKQPPNIGTKKKD 180 (358)
T ss_pred cEEEEEeecc--C-cccHHHHHHHhhhcceeeccCCCCCccccccc
Confidence 8999994432 2 2345777877777787322 133344444444
No 363
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.05 E-value=0.0059 Score=48.50 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+||||++..+..
T Consensus 5 ~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 5 TGVPGAGKSTLIDALIT 21 (148)
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 59999999999988875
No 364
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.00071 Score=54.58 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCCCCCHHHHHHHHhCCCc-----ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-----~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (265)
+|.-++||+|++-++-..-. ..++.. .+|..-......+++..+.+||.-|...- +...+. +. ..
T Consensus 23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~l----rSlw~~---yY--~~ 92 (197)
T KOG0076|consen 23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESL----RSLWKK---YY--WL 92 (197)
T ss_pred eccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHH----HHHHHH---HH--HH
Confidence 47889999999977654311 111111 12333445566778889999999886221 122221 11 25
Q ss_pred ccEEEEEEecCC-cCCCHHHHHHHHHH-HHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDV-YRVDNLDKQITRAI-TDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~-~r~~~~d~~~l~~l-~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+++||++..+ .|+... ...++.+ ...--. ..|+++.+||-|+.
T Consensus 93 ~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~le--g~p~L~lankqd~q 139 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEES-KTAFEKVVENEKLE--GAPVLVLANKQDLQ 139 (197)
T ss_pred hceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhc--CCchhhhcchhhhh
Confidence 799999965544 334333 2333322 221111 27899999999984
No 365
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00036 Score=57.12 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
.|+|||||||++..|+.......| .+.||+.+. .++.+|..+.+++.
T Consensus 10 sgPSG~GKsTl~k~L~~~~~l~~S-VS~TTR~pR--~gEv~G~dY~Fvs~ 56 (191)
T COG0194 10 SGPSGVGKSTLVKALLEDDKLRFS-VSATTRKPR--PGEVDGVDYFFVTE 56 (191)
T ss_pred ECCCCCCHHHHHHHHHhhcCeEEE-EEeccCCCC--CCCcCCceeEeCCH
Confidence 389999999999999988732222 334555544 56677776655543
No 366
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.94 E-value=0.0027 Score=41.84 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred CccEEEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 75 TIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
=.++|||+++++.+. .+ ++...+++.++..|++ +|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 458999998887654 33 4456788999999976 89999999998
No 367
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0046 Score=54.34 Aligned_cols=59 Identities=29% Similarity=0.323 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk 119 (265)
.|..+.||.|-|.+.+. -+ |. .-+|.+++|.-.. .- .+.+.++. +.++ + =++|+||
T Consensus 142 aG~DvIIVETVGvGQse---v~----I~-----~~aDt~~~v~~pg---~G-D~~Q~iK~GimEi-a------Di~vINK 198 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VD----IA-----NMADTFLVVMIPG---AG-DDLQGIKAGIMEI-A------DIIVINK 198 (323)
T ss_pred cCCCEEEEEecCCCcch---hH----Hh-----hhcceEEEEecCC---CC-cHHHHHHhhhhhh-h------heeeEec
Confidence 46668999999996542 11 11 1458999884322 22 23444443 2332 2 3899999
Q ss_pred ccC
Q 024586 120 AQL 122 (265)
Q Consensus 120 ~D~ 122 (265)
+|.
T Consensus 199 aD~ 201 (323)
T COG1703 199 ADR 201 (323)
T ss_pred cCh
Confidence 995
No 368
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.87 E-value=0.0037 Score=53.63 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 81 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~ 81 (265)
|..|+||||++.+++.+-. ..+ +.+|..+.-. . ..+..+-..+.......|||
T Consensus 59 G~rGtGKSSlVkall~~y~-------~~G--------------LRlIev~k~~---L---~~l~~l~~~l~~~~~kFIlf 111 (249)
T PF05673_consen 59 GARGTGKSSLVKALLNEYA-------DQG--------------LRLIEVSKED---L---GDLPELLDLLRDRPYKFILF 111 (249)
T ss_pred cCCCCCHHHHHHHHHHHHh-------hcC--------------ceEEEECHHH---h---ccHHHHHHHHhcCCCCEEEE
Confidence 8999999999999997531 011 3344433210 0 11223333344456788899
Q ss_pred EEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 82 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 82 V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
|++++ ..-.+.+...++.+.+..-...-.++++..|=-
T Consensus 112 ~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 112 CDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 97665 233344567777777654444457788887744
No 369
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.77 E-value=0.026 Score=45.49 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
.+.|||||+-.+. .....+. .+|.++++...+...+.. -..+++.+.+. + .....+|+|+.+.
T Consensus 64 d~viiD~p~~~~~-----~~~~~l~------~ad~viiv~~~~~~s~~~-~~~~~~~~~~~-~---~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER-----GFITAIA------PADEALLVTTPEISSLRD-ADRVKGLLEAL-G---IKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH-----HHHHHHH------hCCcEEEEeCCCcchHHH-HHHHHHHHHHc-C---CceEEEEEeCCcc
Confidence 6899999985321 2222333 668899886555322221 22345555442 1 1457789999975
No 370
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0045 Score=56.08 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEec
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRL 85 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~ 85 (265)
+++.+.|+||.|- ...+...++++..+-..-.||-+|+|.+.
T Consensus 182 e~fdvIIvDTSGR---h~qe~sLfeEM~~v~~ai~Pd~vi~VmDa 223 (483)
T KOG0780|consen 182 ENFDVIIVDTSGR---HKQEASLFEEMKQVSKAIKPDEIIFVMDA 223 (483)
T ss_pred cCCcEEEEeCCCc---hhhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 4667999999997 34456677777776655689999999443
No 371
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.60 E-value=0.018 Score=54.66 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|+-++|||+++++++|+.... +....++.....-.....| ..+.+-|.+-. +.+...+. + ..+|+
T Consensus 431 ~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k---e-------~~cDv 498 (625)
T KOG1707|consen 431 VGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK---E-------AACDV 498 (625)
T ss_pred EcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc---c-------ceeee
Confidence 5999999999999999987544 2221121211122222223 24556565433 22211110 0 25699
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+.++++.+..+ ....+..+.+.+-..-..|+++|.+|+|+.
T Consensus 499 ~~~~YDsS~p~----sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 499 ACLVYDSSNPR----SFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred EEEecccCCch----HHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 99998776433 222232333322222348999999999984
No 372
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0065 Score=59.20 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHhCCCcccccCC---------------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586 5 GVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR 69 (265)
Q Consensus 5 g~GKSSliN~llg~~~~~~~~~---------------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~ 69 (265)
.-|||||+.+|+..+....+.. .+.|......+....+..+++||+||..|... +.-...+
T Consensus 19 dhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s---evssas~- 94 (887)
T KOG0467|consen 19 DHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS---EVSSASR- 94 (887)
T ss_pred cCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh---hhhhhhh-
Confidence 4699999999997654222211 12222222334445778899999999977542 1111111
Q ss_pred HHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 70 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 70 ~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
=.|..++.+++-. .+..+....++.. .-+. ..+++|+||.|.
T Consensus 95 -----l~d~alvlvdvve-gv~~qt~~vlrq~---~~~~--~~~~lvinkidr 136 (887)
T KOG0467|consen 95 -----LSDGALVLVDVVE-GVCSQTYAVLRQA---WIEG--LKPILVINKIDR 136 (887)
T ss_pred -----hcCCcEEEEeecc-ccchhHHHHHHHH---HHcc--CceEEEEehhhh
Confidence 2355554433322 3555555555422 2222 678999999994
No 373
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0022 Score=61.04 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHhCCCcc--cccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586 5 GVGKSSTVNSIIGEKAV--TVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI 67 (265)
Q Consensus 5 g~GKSSliN~llg~~~~--~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i 67 (265)
-+||+|+-+.++-.... .... ..+.|.+.......|...++++|||||..|....-+.++..+
T Consensus 49 dsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVl 128 (721)
T KOG0465|consen 49 DAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVL 128 (721)
T ss_pred ecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhc
Confidence 47999999988854321 1110 112333344456677888999999999988765444444333
Q ss_pred HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
. -++++++.+. ....+.....+...+.. .|.+.-+||.|..
T Consensus 129 D--------GaVlvl~aV~--GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 129 D--------GAVLVLDAVA--GVESQTETVWRQMKRYN-----VPRICFINKMDRM 169 (721)
T ss_pred c--------CeEEEEEccc--ceehhhHHHHHHHHhcC-----CCeEEEEehhhhc
Confidence 2 1233333333 45566666667776654 7888888999973
No 374
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.51 E-value=0.0025 Score=52.72 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=28.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEe
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD 49 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiD 49 (265)
+|++|+||||+++.|+..........+.+|+.+. ..+.+|..+.+++
T Consensus 10 ~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r--~gE~~G~dY~fvs 56 (186)
T PRK14737 10 SSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR--PGDEEGKTYFFLT 56 (186)
T ss_pred ECCCCCCHHHHHHHHHhcCCccccccCccCCCCC--CCCCCCceeEeCC
Confidence 5999999999999999865322222333444332 4445555554443
No 375
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0022 Score=58.55 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 024586 4 GGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL 66 (265)
Q Consensus 4 tg~GKSSliN~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~ 66 (265)
-.+||+|+...|+-...+. +.. ..+.|.+.......|.|.++++|||||..|....
T Consensus 46 idagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le------- 118 (753)
T KOG0464|consen 46 IDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE------- 118 (753)
T ss_pred ecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE-------
Confidence 3589999998887432111 111 1133444555667889999999999999876543
Q ss_pred HHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 67 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 67 i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+.+|+ +-.|.++.|++.++ .+..+...+.+.-.+. ..|.++.+||+|..
T Consensus 119 vercl--rvldgavav~dasa-gve~qtltvwrqadk~-----~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 119 VERCL--RVLDGAVAVFDASA-GVEAQTLTVWRQADKF-----KIPAHCFINKMDKL 167 (753)
T ss_pred HHHHH--HHhcCeEEEEeccC-Ccccceeeeehhcccc-----CCchhhhhhhhhhh
Confidence 33443 24578888865554 3444444444333332 37888889999863
No 376
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.39 E-value=0.06 Score=44.08 Aligned_cols=19 Identities=32% Similarity=0.678 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCChHHHHHHHHHcCC
Confidence 5999999999999999964
No 377
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.39 E-value=0.0012 Score=61.28 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEE----EeeeCC--eEEEEE-----eCCCCCCCCCCcHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV----SRSRAG--FTLNIV-----DTPGLIEGGYVNYHAIQLIKR 69 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~----~~~~~g--~~v~ii-----DTPG~~~~~~~~~~~~~~i~~ 69 (265)
+|.+|+|||||+|.|.+.....+..+.....+.... .....+ ..-.+| |+||..... -.....+..
T Consensus 163 ~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~---~~~a~~iAE 239 (434)
T PRK08472 163 FAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG---AFCAMSVAE 239 (434)
T ss_pred ECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH---HHHHHHHHH
Confidence 589999999999999976432222111111110000 011122 134566 888874321 122334566
Q ss_pred HHhcCCccEEEEEEecC
Q 024586 70 FLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 70 ~l~~~~~d~iL~V~~~d 86 (265)
++...+-||+|++++++
T Consensus 240 yFrd~G~~Vll~~DslT 256 (434)
T PRK08472 240 YFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHcCCCEEEecccch
Confidence 66667899999996665
No 378
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.38 E-value=0.031 Score=39.72 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 81 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~ 81 (265)
|..|+|||++.+.+...-. . .. .... ..+ .+.++|+|+..+..... ..... ..+|.+++
T Consensus 6 g~~G~Gktt~~~~l~~~l~-~-~g-----~~v~----~~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~~vi~ 64 (99)
T cd01983 6 GKGGVGKTTLAANLAAALA-K-RG-----KRVL----LID--DYVLIDTPPGLGLLVLL--CLLAL------LAADLVII 64 (99)
T ss_pred CCCCCCHHHHHHHHHHHHH-H-CC-----CeEE----EEC--CEEEEeCCCCccchhhh--hhhhh------hhCCEEEE
Confidence 7789999999988876421 0 00 0000 011 78899999976432110 01111 26688888
Q ss_pred EEecC
Q 024586 82 VDRLD 86 (265)
Q Consensus 82 V~~~d 86 (265)
+...+
T Consensus 65 v~~~~ 69 (99)
T cd01983 65 VTTPE 69 (99)
T ss_pred ecCCc
Confidence 85544
No 379
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.0092 Score=48.96 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC---CccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---PRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t---~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|..|.||++++++.+-..... .+.+++ .++.......+..++.+|||.|..-.+...+. .++ .+.-
T Consensus 16 vGdgg~gKtt~vkr~ltgeFe~--~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg------yyI--~~qc 85 (216)
T KOG0096|consen 16 VGDGGTGKTTFVKRHLTGEFEK--TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG------YYI--QGQC 85 (216)
T ss_pred ecCCcccccchhhhhhccccee--cccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc------cEE--ecce
Confidence 5999999999999988765322 122221 12222222233478999999997543221110 111 1223
Q ss_pred EEEEEEecCCcCCC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++ +++++.+ +++ .+-..+.+.+.+..++ .|+++..||.|..
T Consensus 86 Ai-imFdVts-r~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 86 AI-IMFDVTS-RFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK 127 (216)
T ss_pred eE-EEeeeee-hhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence 33 4444443 333 4455677778877765 7999999999974
No 380
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.35 E-value=0.016 Score=44.11 Aligned_cols=97 Identities=18% Similarity=0.312 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---LNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d 77 (265)
.|++|+|||+++..+...- +.++.-+|.+-+.+.. . .+..+.+...+ ......
T Consensus 4 ~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSY-A-GDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSS-T-THHHHHHHHHHHHHHHTSTS
T ss_pred ECcCCCCeeHHHHHHHhhc----------------------cccccccccccccccc-c-cccccccccccccccccccc
Confidence 4999999999999998753 1224456665554221 1 12222233322 111225
Q ss_pred EEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcC--CcEEEEEeCcc
Q 024586 78 VLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIW--KRALIVLTHAQ 121 (265)
Q Consensus 78 ~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~--~~~ivV~tk~D 121 (265)
.+|+++.+|.-- ........+..+...+..... .++++|+|-.+
T Consensus 60 ~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 60 CVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 888897776411 122345556666665543222 35777776554
No 381
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.33 E-value=0.0038 Score=48.87 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-ccCCCCCCCccEEEEeeeCCeEEEEEeCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~ 53 (265)
+|+||+||||+++.|.+.-... ......+|..+. ..+.+|..+.++|...+
T Consensus 5 ~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~--~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR--PGEVDGVDYHFVSKEEF 56 (137)
T ss_pred ECCCCCCHHHHHHHHHhcCCccceecccccccCCC--CCccCCceeEEeCHHHH
Confidence 5999999999999999863211 112222344332 23456677777764433
No 382
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.32 E-value=0.033 Score=40.92 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 81 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~ 81 (265)
.+.|+||||+.-.|...-. ..+ .+......... ..+.|+|||+..+. .....+. .+|.+++
T Consensus 7 ~kgG~Gkst~~~~la~~~~-~~~------~~vl~~d~d~~-~d~viiD~p~~~~~-----~~~~~l~------~ad~viv 67 (104)
T cd02042 7 QKGGVGKTTTAVNLAAALA-RRG------KRVLLIDLDPQ-YDYIIIDTPPSLGL-----LTRNALA------AADLVLI 67 (104)
T ss_pred CCCCcCHHHHHHHHHHHHH-hCC------CcEEEEeCCCC-CCEEEEeCcCCCCH-----HHHHHHH------HCCEEEE
Confidence 3789999998866553211 000 00111111111 56889999996432 2223333 5699998
Q ss_pred EEecC
Q 024586 82 VDRLD 86 (265)
Q Consensus 82 V~~~d 86 (265)
+++.+
T Consensus 68 ~~~~~ 72 (104)
T cd02042 68 PVQPS 72 (104)
T ss_pred eccCC
Confidence 85544
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.29 E-value=0.053 Score=42.70 Aligned_cols=19 Identities=42% Similarity=0.737 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999999975
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.038 Score=44.77 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 385
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.21 E-value=0.003 Score=42.45 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
.|++|+||||++.+|.
T Consensus 29 ~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQ 44 (62)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998875
No 386
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.038 Score=49.49 Aligned_cols=128 Identities=14% Similarity=0.148 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCC------Cc---------ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGE------KA---------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~------~~---------~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
||.-.-||+||--+|..- .. ++.....+.|.......++-..+.+--+|.||..| +
T Consensus 60 IGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD-------Y-- 130 (449)
T KOG0460|consen 60 IGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD-------Y-- 130 (449)
T ss_pred cccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH-------H--
Confidence 467778999999888742 10 01111123333333344455677888999999842 2
Q ss_pred HHHHHHhc-CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586 66 LIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 144 (265)
Q Consensus 66 ~i~~~l~~-~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 144 (265)
|+..++. ..-|..++|+...+....+. ++.+ .|.+..|- +++++.+||+|+. ++...-+.++ -.++++
T Consensus 131 -IKNMItGaaqMDGaILVVaatDG~MPQT-rEHl-LLArQVGV---~~ivvfiNKvD~V--~d~e~leLVE---mE~REl 199 (449)
T KOG0460|consen 131 -IKNMITGAAQMDGAILVVAATDGPMPQT-REHL-LLARQVGV---KHIVVFINKVDLV--DDPEMLELVE---MEIREL 199 (449)
T ss_pred -HHHhhcCccccCceEEEEEcCCCCCcch-HHHH-HHHHHcCC---ceEEEEEeccccc--CCHHHHHHHH---HHHHHH
Confidence 3333321 24588888866655444333 3322 23344444 7899999999995 2322333332 455666
Q ss_pred Hhcc
Q 024586 145 VSPS 148 (265)
Q Consensus 145 i~~~ 148 (265)
+...
T Consensus 200 Lse~ 203 (449)
T KOG0460|consen 200 LSEF 203 (449)
T ss_pred HHHc
Confidence 6543
No 387
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.14 E-value=0.0029 Score=51.44 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG 52 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG 52 (265)
+|++|+||||+++.|.+...........+|..+. ..+.++..+.++++..
T Consensus 7 ~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~ 56 (180)
T TIGR03263 7 SGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEE 56 (180)
T ss_pred ECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHH
Confidence 5999999999999999864322211122333222 2234455555555444
No 388
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.14 E-value=0.029 Score=55.94 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--CCCCCCccEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~--~~~~t~~~~~~~~~---~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (265)
+|.-++|||||+|.|+|......+. .+.||......... .....+.|+|+-|.........+.++.-...+...-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~ 80 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV 80 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence 6999999999999999987532222 12233322111111 123478899999875432221112332222222224
Q ss_pred ccEEEEE---EecCCcC-C-CHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccC
Q 024586 76 IDVLLYV---DRLDVYR-V-DNLDKQITRAITDNFGEQ--IWKRALIVLTHAQL 122 (265)
Q Consensus 76 ~d~iL~V---~~~d~~r-~-~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~ 122 (265)
+|++|+= .++..+. . -..-+.+++.-.+.|++. ...++.++|---|-
T Consensus 81 s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~ 134 (742)
T PF05879_consen 81 SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDH 134 (742)
T ss_pred hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeC
Confidence 5666543 3333221 1 123445556666778643 22344444444444
No 389
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.09 E-value=0.018 Score=51.59 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=48.9
Q ss_pred cEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-C------CHHHHHHHHHHHHhc
Q 024586 33 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNF 105 (265)
Q Consensus 33 ~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-~------~~~d~~~l~~l~~~~ 105 (265)
.......+++..+.++|+.|..... ..+. .+. .++++++||+++++.. . ...-.+.+..+....
T Consensus 151 i~~~~f~~~~~~~~~~DvgGq~~~R---~kW~----~~f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~ 221 (317)
T cd00066 151 IVETKFTIKNLKFRMFDVGGQRSER---KKWI----HCF--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC 221 (317)
T ss_pred eeEEEEEecceEEEEECCCCCcccc---hhHH----HHh--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH
Confidence 3344566778899999999974322 1222 222 3889999998877531 0 111223333333333
Q ss_pred CcC--cCCcEEEEEeCccCC
Q 024586 106 GEQ--IWKRALIVLTHAQLS 123 (265)
Q Consensus 106 g~~--~~~~~ivV~tk~D~~ 123 (265)
... ...|+++++||.|+.
T Consensus 222 ~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 222 NSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred hCccccCCCEEEEccChHHH
Confidence 322 237999999999974
No 390
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.06 E-value=0.027 Score=49.03 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCC-CCCCCccEEEEe---eeCCeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTF-QSEGPRPVMVSR---SRAGFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~-~~~t~~~~~~~~---~~~g~~v~iiDTPG~~~~ 56 (265)
+|+..+|||.|+|.|++.. .+..++. .++|...-.... ...+..+.++||.|+++.
T Consensus 27 ~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 27 VGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp EEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred ecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 4889999999999999864 3444442 345554333322 224578999999999883
No 391
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.0037 Score=53.51 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
||+||+|||||+|.+.|-..
T Consensus 35 lGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999653
No 392
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.93 E-value=0.0063 Score=51.03 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+||||+++.|....
T Consensus 19 ~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 19 SGPSGVGKDAVLARMRERK 37 (206)
T ss_pred ECcCCCCHHHHHHHHHhcC
Confidence 5999999999999998643
No 393
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.92 E-value=0.0039 Score=61.03 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=40.0
Q ss_pred EEEEEeCCCCCCCC--CCc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586 44 TLNIVDTPGLIEGG--YVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117 (265)
Q Consensus 44 ~v~iiDTPG~~~~~--~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~ 117 (265)
+++++|+||+.... ..+ +++.+.+..++. ..+.+++.+.... .+-..-..++...+.-... .+++-|+
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~--~~~~iILav~~an--~d~ats~alkiarevDp~g--~RTigvi 206 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIE--KPNRIILAVTPAN--SDIATSPALVVAREVDPGG--SRTLEVI 206 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhcc--ccchhhhhccchh--hhhhcCHHHHHHHhhCCCc--cchhHHh
Confidence 47999999997532 222 234444444443 4556555532221 1112223344444433222 7899999
Q ss_pred eCccCCC
Q 024586 118 THAQLSL 124 (265)
Q Consensus 118 tk~D~~~ 124 (265)
||.|+.+
T Consensus 207 tK~Dlmd 213 (657)
T KOG0446|consen 207 TKFDFMD 213 (657)
T ss_pred hhHHhhh
Confidence 9999863
No 394
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.023 Score=48.61 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|--.+||||+-...+..-.....-+-..|.........-.-..+.+||.||..+.-...-+.....+ +.-+++
T Consensus 33 MG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~------~~gALi 106 (347)
T KOG3887|consen 33 MGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR------GVGALI 106 (347)
T ss_pred EeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh------ccCeEE
Confidence 47778999999877776431111111111222222121112346789999998664222212222222 678999
Q ss_pred EEEecCCcCCCHHHHHHHHHH----HHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAI----TDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l----~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|| +|+. ++-.+.+..| .+...-+...++=|.+.|+|..
T Consensus 107 fv--IDaQ---ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 107 FV--IDAQ---DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EE--Eech---HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 99 4542 1222333333 3333223345666778888874
No 395
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.80 E-value=0.011 Score=50.32 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
||++|+||||-+|.+.
T Consensus 8 IGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 8 IGPPGSGKSTYCNGMS 23 (290)
T ss_pred EcCCCCCccchhhhHH
Confidence 6999999999998765
No 396
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.76 E-value=0.0055 Score=52.05 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
+|+||||||||+|.|-|-+.
T Consensus 37 ~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred ECCCCCCHHHHHHHHhcccC
Confidence 69999999999999988653
No 397
>PHA02518 ParA-like protein; Provisional
Probab=95.73 E-value=0.048 Score=45.24 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=35.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHh--cCcCcCCcEEEEEeC
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN--FGEQIWKRALIVLTH 119 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~--~g~~~~~~~ivV~tk 119 (265)
...+.||||||-.+ ......+. .+|.+|++...+...+.. -.++++.+... +... .....++.|+
T Consensus 76 ~~d~viiD~p~~~~-----~~~~~~l~------~aD~viip~~ps~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~iv~n~ 142 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----ELARAALR------IADMVLIPVQPSPFDIWA-APDLVELIKARQEVTDG-LPKFAFIISR 142 (211)
T ss_pred cCCEEEEeCCCCcc-----HHHHHHHH------HCCEEEEEeCCChhhHHH-HHHHHHHHHHHHhhCCC-CceEEEEEec
Confidence 35689999998632 12223333 679999996655322221 12333434332 1111 2345677777
Q ss_pred cc
Q 024586 120 AQ 121 (265)
Q Consensus 120 ~D 121 (265)
.+
T Consensus 143 ~~ 144 (211)
T PHA02518 143 AI 144 (211)
T ss_pred cC
Confidence 65
No 398
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.73 E-value=0.021 Score=51.29 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHhCC
Q 024586 2 GKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 2 G~tg~GKSSliN~llg~ 18 (265)
|--|+|||||+|.++..
T Consensus 11 GFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 11 GFLGAGKTTLLRHILNE 27 (318)
T ss_pred ECCCCCHHHHHHHHHhc
Confidence 77899999999999954
No 399
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.024 Score=50.68 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN---KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~---~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~ 117 (265)
.+..+.++||.|-..+...--+-++.|.+-... ..+|=+++| +|+. ...+-..-.+.+.+.. .-.=+++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv--lDAt-tGqnal~QAk~F~eav-----~l~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV--LDAT-TGQNALSQAKIFNEAV-----GLDGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE--EEcc-cChhHHHHHHHHHHhc-----CCceEEE
Confidence 466799999999654322111223334433321 245668888 3431 1233334445555554 3446789
Q ss_pred eCccCC
Q 024586 118 THAQLS 123 (265)
Q Consensus 118 tk~D~~ 123 (265)
||.|-.
T Consensus 292 TKlDgt 297 (340)
T COG0552 292 TKLDGT 297 (340)
T ss_pred EecccC
Confidence 999964
No 400
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.026 Score=52.04 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.|+||.|-. ..+++..++++..-..-.||=+|+|++.. ..+.-....+.+.+.. .-+=||+||.
T Consensus 181 ~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llVvDam---~GQdA~~~A~aF~e~l-----~itGvIlTKl 249 (451)
T COG0541 181 EGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLVVDAM---IGQDAVNTAKAFNEAL-----GITGVILTKL 249 (451)
T ss_pred cCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEEEecc---cchHHHHHHHHHhhhc-----CCceEEEEcc
Confidence 34579999999973 44666777766554445789999994332 2233344555555543 2334566777
Q ss_pred cC
Q 024586 121 QL 122 (265)
Q Consensus 121 D~ 122 (265)
|.
T Consensus 250 DG 251 (451)
T COG0541 250 DG 251 (451)
T ss_pred cC
Confidence 65
No 401
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.69 E-value=0.0057 Score=50.23 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|+||+|||||+|.+.|-.
T Consensus 31 ~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 31 LGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred ECCCCccHHHHHHHHHhcc
Confidence 6999999999999999954
No 402
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.68 E-value=0.008 Score=49.98 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.+.-
T Consensus 11 ~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 11 SGPSGAGKSTLVKALLERD 29 (205)
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999999864
No 403
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.65 E-value=0.0053 Score=47.49 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||+++|.|..
T Consensus 17 ~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EESTTSSHHHHHHHHTTSS
T ss_pred EccCCCccccceeeecccc
Confidence 5999999999999999975
No 404
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.64 E-value=0.03 Score=50.36 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=40.1
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 46 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 46 ~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.||||+|+.+ +..-...+..|+.+ ++|+++.+ +. ..+...+.+.++..-|.+ ++-+-|.+..
T Consensus 215 ~iInT~g~i~-~egy~~llhai~~f----~v~vviVL---g~-------ErLy~~lkk~~~~~~~v~-vv~lpKsgGv 276 (415)
T KOG2749|consen 215 CIINTCGWIE-GEGYAALLHAIKAF----EVDVVIVL---GQ-------ERLYSSLKKDLPPKKNVR-VVKLPKSGGV 276 (415)
T ss_pred eEEeccceec-cccHHHHHHHHHHc----CccEEEEe---cc-------HHHHHHHHhhccccccce-EEEecCCCCe
Confidence 5899999987 33334455555544 88888877 42 267777888887554444 4455776653
No 405
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.63 E-value=0.0096 Score=49.85 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE-EEEEEecCCcCCCHHHHHHH---HHHHHhcCcCcCCcEEEEEeC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV-LLYVDRLDVYRVDNLDKQIT---RAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~-iL~V~~~d~~r~~~~d~~~l---~~l~~~~g~~~~~~~ivV~tk 119 (265)
.+.|+|.||..+--..- ..+..+-+.+..-.+.+ ++|+ +++.=+.+..+.+- .++..+.. .-.|.|=|++|
T Consensus 99 dylifDcPGQIELytH~-pVm~~iv~hl~~~~F~~c~Vyl--ldsqf~vD~~KfiSG~lsAlsAMi~--lE~P~INvlsK 173 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHL-PVMPQIVEHLKQWNFNVCVVYL--LDSQFLVDSTKFISGCLSALSAMIS--LEVPHINVLSK 173 (273)
T ss_pred CEEEEeCCCeeEEeecC-hhHHHHHHHHhcccCceeEEEE--eccchhhhHHHHHHHHHHHHHHHHH--hcCcchhhhhH
Confidence 47899999988742221 22333333332223333 3444 45422333333332 23333322 22788999999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
.|+.
T Consensus 174 MDLl 177 (273)
T KOG1534|consen 174 MDLL 177 (273)
T ss_pred HHHh
Confidence 9995
No 406
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=95.62 E-value=0.042 Score=49.82 Aligned_cols=83 Identities=8% Similarity=0.058 Sum_probs=50.3
Q ss_pred ccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-------CCHHHHHHHHHHHHh
Q 024586 32 RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDN 104 (265)
Q Consensus 32 ~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-------~~~~d~~~l~~l~~~ 104 (265)
........+++..+.++|..|..... ..+ ..++ .++++++||+++++.. ....-.+.+..+...
T Consensus 173 Gi~~~~f~~~~~~~~~~DvgGqr~~R---~kW----~~~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l 243 (342)
T smart00275 173 GIQETAFIVKKLFFRMFDVGGQRSER---KKW----IHCF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI 243 (342)
T ss_pred ceEEEEEEECCeEEEEEecCCchhhh---hhH----HHHh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence 34445567788899999999973222 122 2222 3789999998877531 011122333444444
Q ss_pred cCcC--cCCcEEEEEeCccCC
Q 024586 105 FGEQ--IWKRALIVLTHAQLS 123 (265)
Q Consensus 105 ~g~~--~~~~~ivV~tk~D~~ 123 (265)
+... ...|+++++||.|+.
T Consensus 244 ~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 244 CNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred HcCccccCCcEEEEEecHHhH
Confidence 4322 237999999999984
No 407
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.019 Score=51.99 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=45.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
-+++||..|... +....-.-+..-.+|..++|++.+. .++...++.+..+.... .|+.+++||.|+.
T Consensus 250 lvTfiDLAGh~k-------Y~~TTi~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~-----iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 250 LVTFIDLAGHAK-------YQKTTIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAALN-----IPFFVLVTKMDLV 316 (591)
T ss_pred eEEEeecccchh-------hheeeeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHhC-----CCeEEEEEeeccc
Confidence 378999988632 2111111233346899888877664 36666666666666554 8999999999996
Q ss_pred CCC
Q 024586 124 LPD 126 (265)
Q Consensus 124 ~~~ 126 (265)
.+.
T Consensus 317 ~~~ 319 (591)
T KOG1143|consen 317 DRQ 319 (591)
T ss_pred cch
Confidence 543
No 408
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.016 Score=45.59 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHhCCCccc---ccCCCCCCCccE-------------------EEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586 5 GVGKSSTVNSIIGEKAVT---VSTFQSEGPRPV-------------------MVSRSRAGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 5 g~GKSSliN~llg~~~~~---~~~~~~~t~~~~-------------------~~~~~~~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
|.||||+..+|.|.+... .-...+++.... .....+.+.++.|||.-|..+-. -
T Consensus 2 ~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSir----P 77 (182)
T KOG0072|consen 2 GGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIR----P 77 (182)
T ss_pred CchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCccccc----H
Confidence 679999999999973210 000111111111 12233455667899987764332 1
Q ss_pred HHHHHHHHHhcCCccEEEEEEecC-CcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 63 AIQLIKRFLLNKTIDVLLYVDRLD-VYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 63 ~~~~i~~~l~~~~~d~iL~V~~~d-~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
+... +. ...|+++||++.. ..|+...-..+.-.+++---.. -.++++.||.|.
T Consensus 78 yWRc---Yy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~ 131 (182)
T KOG0072|consen 78 YWRC---YY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDY 131 (182)
T ss_pred HHHH---Hh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccc
Confidence 2221 11 2678999995433 2335544444554444321111 457788899997
No 409
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=95.47 E-value=0.065 Score=42.71 Aligned_cols=110 Identities=19% Similarity=0.121 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+..||+||+-...|....+.. .+..+..+......+.|. .+.|||.-|..+. ..++- +.+.++-+
T Consensus 26 lGD~qiGKTs~mvkYV~~~~de~~-~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~-------~n~lP--iac~dsva 95 (205)
T KOG1673|consen 26 LGDAQIGKTSLMVKYVQNEYDEEY-TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF-------INMLP--IACKDSVA 95 (205)
T ss_pred ecccccCceeeehhhhcchhHHHH-HHHhCccceeeEEEecceEEEEEEEecCCcHhh-------hccCc--eeecCcEE
Confidence 588999999999999987642111 111223333344445554 5689999887422 11111 12246778
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|||+.++... .+-. .+.+..++..|-+-----|+|.||-|+.
T Consensus 96 IlFmFDLt~r-~TLn--Si~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 96 ILFMFDLTRR-STLN--SIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred EEEEEecCch-HHHH--HHHHHHHHHhccCCccceEEeccchHhh
Confidence 9999887752 2211 2333344444422112236789999863
No 410
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.45 E-value=0.036 Score=43.30 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=31.6
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+|++|+|++... .....+..+.+.+.+.. . .+|+++|+||+|+.
T Consensus 11 ~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~-~--~k~~iivlNK~DL~ 55 (141)
T cd01857 11 RSDIVVQIVDARN-PLLFRPPDLERYVKEVD-P--RKKNILLLNKADLL 55 (141)
T ss_pred hCCEEEEEEEccC-CcccCCHHHHHHHHhcc-C--CCcEEEEEechhcC
Confidence 7899999966543 23444556666666542 1 28999999999985
No 411
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.36 E-value=0.11 Score=45.46 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 117 ~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 117 ISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred EcCCCCCHHHHHHHHhCcc
Confidence 5999999999999999964
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.34 E-value=0.089 Score=39.98 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||++++.+.+.-
T Consensus 25 ~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 25 YGPPGTGKTTLARAIANEL 43 (151)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998864
No 413
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.31 E-value=0.033 Score=50.92 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|..+||||||.+-|.++
T Consensus 79 vG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 79 VGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ECCcCcCHHHHHHHHHHH
Confidence 699999999998777654
No 414
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.02 Score=48.88 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
+|+||+|||||.+.|.|-..
T Consensus 39 vGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 39 VGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EcCCCCCHHHHHHHHhcccC
Confidence 69999999999999999764
No 415
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.26 E-value=0.011 Score=49.53 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999974
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.011 Score=50.30 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 417
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.07 E-value=0.039 Score=43.90 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=31.6
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+|++++|++... .+...+..+.+.+... . ..+|+++|+||+|+.
T Consensus 8 ~aD~il~VvD~~~-p~~~~~~~i~~~l~~~-~--~~~p~ilVlNKiDl~ 52 (157)
T cd01858 8 SSDVVIQVLDARD-PMGTRCKHVEEYLKKE-K--PHKHLIFVLNKCDLV 52 (157)
T ss_pred hCCEEEEEEECCC-CccccCHHHHHHHHhc-c--CCCCEEEEEEchhcC
Confidence 7899999966543 1344566666766653 1 127899999999995
No 418
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.013 Score=52.85 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|+||+|||||++.|.|-.
T Consensus 35 lGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999965
No 419
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.04 E-value=0.21 Score=41.31 Aligned_cols=19 Identities=42% Similarity=0.842 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 41 ~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 41 MGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 420
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.03 E-value=0.014 Score=48.07 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 24 ~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 421
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.03 E-value=0.013 Score=49.15 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCCCHHHHHHHHhCCc
Confidence 6999999999999999974
No 422
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.02 E-value=0.013 Score=49.17 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.013 Score=49.32 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 424
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.014 Score=49.27 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 425
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.99 E-value=0.23 Score=39.87 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCH-HHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~-~d~~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
.+..+.|+|||+..+ ........ ...+|.+++|.+.+. .+. .-..+++.+.+.. . +..-+|+|+
T Consensus 66 ~~yD~VIiD~pp~~~-----~~~~~~~~----~~~ad~viiV~~p~~--~s~~~~~~~~~~l~~~~-~---~~~gvv~N~ 130 (169)
T cd02037 66 GELDYLVIDMPPGTG-----DEHLTLAQ----SLPIDGAVIVTTPQE--VALDDVRKAIDMFKKVN-I---PILGVVENM 130 (169)
T ss_pred CCCCEEEEeCCCCCc-----HHHHHHHh----ccCCCeEEEEECCch--hhHHHHHHHHHHHHhcC-C---CeEEEEEcC
Confidence 356789999999632 12221110 125699999965543 222 2234555555542 1 344578999
Q ss_pred ccC
Q 024586 120 AQL 122 (265)
Q Consensus 120 ~D~ 122 (265)
.+.
T Consensus 131 ~~~ 133 (169)
T cd02037 131 SYF 133 (169)
T ss_pred Ccc
Confidence 875
No 426
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.97 E-value=0.014 Score=48.89 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 427
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.015 Score=48.68 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 31 LGPNGAGKTTLMRILATLT 49 (211)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 428
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.91 E-value=0.014 Score=49.40 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 5999999999999999974
No 429
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.90 E-value=0.015 Score=48.48 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 430
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.016 Score=48.53 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 431
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.85 E-value=0.016 Score=48.81 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 432
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.84 E-value=0.015 Score=47.83 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+||||++++|++.-
T Consensus 31 ~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 5999999999999999864
No 433
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.81 E-value=0.015 Score=47.53 Aligned_cols=17 Identities=41% Similarity=0.476 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+|||||+|.+++
T Consensus 27 ~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 27 TGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 59999999999999985
No 434
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.12 Score=46.57 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|.-|+|||++++.|.+..
T Consensus 194 lG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 194 LGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred ecCCCccHHHHHHHHhccC
Confidence 6899999999999999874
No 435
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.80 E-value=0.063 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
.|.||+||||++|+|+..-
T Consensus 166 ~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 166 SGGTSTGKTTFTNAALREI 184 (332)
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 4999999999999999753
No 436
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.80 E-value=0.017 Score=48.03 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 30 ~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 437
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.80 E-value=0.017 Score=48.60 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 438
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.78 E-value=0.017 Score=49.39 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999964
No 439
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.77 E-value=0.11 Score=38.84 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||++..+...
T Consensus 6 ~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 6 IGDSGVGKVGKSARFVQF 23 (124)
T ss_pred ECCCChhHHHHHHHHhcC
Confidence 699999999999998544
No 440
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.018 Score=48.16 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 32 LGPNGAGKTTTIRMILGII 50 (210)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 441
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.017 Score=49.11 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 37 IGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 442
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.75 E-value=0.018 Score=48.19 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 32 IGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 443
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.75 E-value=0.017 Score=48.31 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 444
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.75 E-value=0.018 Score=48.55 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 19 ~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999974
No 445
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.74 E-value=0.18 Score=40.85 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
....+.|+|||+... ......+. .+|.+++++..+.... ..-..+++.+.+. + .++.+|+|++
T Consensus 91 ~~~d~viiDtpp~~~-----~~~~~~l~------~aD~vliv~~~~~~~~-~~~~~~~~~l~~~-~----~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIG-----CPVIASLT------GADAALLVTEPTPSGL-HDLERAVELVRHF-G----IPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCc-----HHHHHHHH------cCCEEEEEecCCcccH-HHHHHHHHHHHHc-C----CCEEEEEeCC
Confidence 345789999997532 12222222 6799999976664222 2223455555443 2 5678999999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 154 ~~~ 156 (179)
T cd03110 154 DLN 156 (179)
T ss_pred CCC
Confidence 863
No 446
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.018 Score=46.90 Aligned_cols=19 Identities=37% Similarity=0.657 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 447
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.70 E-value=0.018 Score=47.65 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
+|+||+|||||++.|++...
T Consensus 34 ~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 34 TGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ECCCCCCHHHHHHHHHhhhc
Confidence 59999999999999999764
No 448
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.70 E-value=0.018 Score=48.41 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 449
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.022 Score=48.39 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT 22 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~ 22 (265)
+|+.|+|||||.++|.|.....
T Consensus 36 MGPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCce
Confidence 6999999999999999986433
No 450
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.69 E-value=0.019 Score=46.20 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 32 LGENGAGKSTLMKILSGLY 50 (163)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 451
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.68 E-value=0.019 Score=48.92 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.68 E-value=0.019 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
+|+||+|||||+.+|-+-+.
T Consensus 34 iGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred ECCCCCCHHHHHHHHHCCcC
Confidence 69999999999999998653
No 453
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.67 E-value=0.018 Score=48.17 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999999974
No 454
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.66 E-value=0.019 Score=47.85 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 32 LGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 455
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.018 Score=49.05 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 456
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.64 E-value=0.02 Score=48.64 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 457
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.60 E-value=0.019 Score=43.02 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|+||+|||||++.+.
T Consensus 21 ~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 21 TGDSGIGKTELALELI 36 (107)
T ss_pred EcCCCCCHHHHHHHhh
Confidence 5999999999999986
No 458
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.036 Score=48.54 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
.|.||+||||+||.|.|-.
T Consensus 30 FG~SGsGKTslin~IaGL~ 48 (352)
T COG4148 30 FGPSGSGKTSLINMIAGLT 48 (352)
T ss_pred ecCCCCChhhHHHHHhccC
Confidence 4899999999999999964
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.57 E-value=0.02 Score=47.04 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+||||+++.|.+..
T Consensus 8 ~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999998763
No 460
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.55 E-value=0.12 Score=44.16 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=36.0
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHh---cCcCcCCcEEEEEe
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN---FGEQIWKRALIVLT 118 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~---~g~~~~~~~ivV~t 118 (265)
+..+.||||||..+ ......+. .+|.+|+.+..+...+. .-..+++.+.+. ...+ .+..+|+|
T Consensus 83 ~yD~iiID~pp~~~-----~~~~~al~------~aD~vliP~~ps~~d~~-~~~~~~~~v~~~~~~~~~~--l~~~iv~~ 148 (231)
T PRK13849 83 GFDYALADTHGGSS-----ELNNTIIA------SSNLLLIPTMLTPLDID-EALSTYRYVIELLLSENLA--IPTAILRQ 148 (231)
T ss_pred CCCEEEEeCCCCcc-----HHHHHHHH------HCCEEEEeccCcHHHHH-HHHHHHHHHHHHHHHhCCC--CCeEEEEE
Confidence 46789999999642 22223333 56888877555432111 112333333332 2222 45668999
Q ss_pred Ccc
Q 024586 119 HAQ 121 (265)
Q Consensus 119 k~D 121 (265)
.++
T Consensus 149 ~~~ 151 (231)
T PRK13849 149 RVP 151 (231)
T ss_pred ecc
Confidence 886
No 461
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.55 E-value=0.021 Score=47.94 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|.+|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999964
No 462
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.55 E-value=0.021 Score=47.82 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 463
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.52 E-value=0.021 Score=49.49 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 464
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.49 E-value=0.023 Score=46.53 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 32 AGLVGNGQTELAEALFGLR 50 (182)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 465
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.49 E-value=0.022 Score=47.19 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 466
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.02 Score=49.26 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 38 IGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999996
No 467
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.48 E-value=0.022 Score=48.49 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 32 IGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ECCCCCCHHHHHHHHcCCC
Confidence 5999999999999999964
No 468
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.022 Score=48.63 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 469
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.46 E-value=0.022 Score=48.04 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 37 ~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 37 VGESGSGKSTLARAILGLL 55 (228)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 470
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.46 E-value=0.022 Score=48.37 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 18 ~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 18 VGESGSGKSLTCLAILGLL 36 (230)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999975
No 471
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.46 E-value=0.023 Score=47.49 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 34 TGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 472
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.46 E-value=0.022 Score=48.65 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999997
No 473
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.023 Score=48.14 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 5999999999999999975
No 474
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.43 E-value=0.096 Score=47.50 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
.|.+|+||||++|+|++.-
T Consensus 168 ~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 168 CGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred ECCCCccHHHHHHHHHccc
Confidence 4999999999999999863
No 475
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.42 E-value=0.023 Score=49.28 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 vG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 32 VGPNGIGKSTALKILAGKL 50 (255)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999975
No 476
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.022 Score=54.22 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
||+||+|||||+|.|+|-..
T Consensus 353 vG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCC
Confidence 69999999999999999753
No 477
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.41 E-value=0.023 Score=48.44 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999974
No 478
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.023 Score=47.64 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 29 ~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 29 FGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 479
>PLN02772 guanylate kinase
Probab=94.41 E-value=0.037 Score=50.85 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc-cCCCCCCCccEEEEeeeCCeEEEEEe
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV-STFQSEGPRPVMVSRSRAGFTLNIVD 49 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~-~~~~~~t~~~~~~~~~~~g~~v~iiD 49 (265)
+|++|||||||++.|+....... .....+|+.+. ..+.+|..+.+++
T Consensus 141 sGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR--~gE~dG~dY~Fvs 188 (398)
T PLN02772 141 SGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--EMEKDGVHYHFTE 188 (398)
T ss_pred ECCCCCCHHHHHHHHhhhccccccccccccCCCCc--ccccCCceEeeCC
Confidence 59999999999999987642111 12334555443 3345565554443
No 480
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.41 E-value=0.023 Score=49.13 Aligned_cols=18 Identities=39% Similarity=0.780 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|+.|+|||||+.+|+|-
T Consensus 36 iGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 36 IGPNGAGKSTLLKAILGL 53 (254)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999993
No 481
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.40 E-value=0.024 Score=48.01 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLD 60 (228)
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999974
No 482
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.024 Score=49.52 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 56 ~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 56 MGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999975
No 483
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.39 E-value=0.024 Score=48.19 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 17 ~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 484
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.38 E-value=0.066 Score=44.33 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=18.8
Q ss_pred CcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586 106 GEQIWKRALIVLTHAQLSLPDRLDYEVF 133 (265)
Q Consensus 106 g~~~~~~~ivV~tk~D~~~~~~~~~~~~ 133 (265)
|+.+.+.=++|+||.|+.+.-+.+.+.+
T Consensus 138 gP~i~~aDllVInK~DLa~~v~~dlevm 165 (202)
T COG0378 138 GPGIFKADLLVINKTDLAPYVGADLEVM 165 (202)
T ss_pred CCceeEeeEEEEehHHhHHHhCccHHHH
Confidence 4444456789999999976555555443
No 485
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.36 E-value=0.079 Score=47.60 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEE
Q 024586 43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116 (265)
Q Consensus 43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV 116 (265)
....||.|-|+.++.. .+..++. .-..|.++-| +|+.++...-....+...+ .+.--=++|
T Consensus 85 ~D~ivIEtTGlA~P~p-------v~~t~~~~~~l~~~~~ld~vvtv--VDa~~~~~~~~~~~~~~~~----Qia~AD~iv 151 (323)
T COG0523 85 PDRLVIETTGLADPAP-------VIQTFLTDPELADGVRLDGVVTV--VDAAHFLEGLDAIAELAED----QLAFADVIV 151 (323)
T ss_pred CCEEEEeCCCCCCCHH-------HHHHhccccccccceeeceEEEE--EeHHHhhhhHHHHHHHHHH----HHHhCcEEE
Confidence 4578999999987632 2222221 1256778888 4554543322211111111 111234899
Q ss_pred EeCccCCC
Q 024586 117 LTHAQLSL 124 (265)
Q Consensus 117 ~tk~D~~~ 124 (265)
+||.|+..
T Consensus 152 lNK~Dlv~ 159 (323)
T COG0523 152 LNKTDLVD 159 (323)
T ss_pred EecccCCC
Confidence 99999964
No 486
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.36 E-value=0.025 Score=46.78 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999975
No 487
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.025 Score=48.41 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 488
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.35 E-value=0.025 Score=46.20 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 31 ~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 489
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.35 E-value=0.024 Score=48.71 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 35 IGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999974
No 490
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.023 Score=48.82 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 35 ~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999974
No 491
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.35 E-value=0.024 Score=49.11 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|+.|+|||||+++|.|-
T Consensus 34 iGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 34 LGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 699999999999999984
No 492
>PRK10908 cell division protein FtsE; Provisional
Probab=94.35 E-value=0.024 Score=47.77 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 493
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.34 E-value=0.024 Score=50.21 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.1
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
+|++|+|||||++.|+|...
T Consensus 37 lG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 37 LGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred ECCCCCCHHHHHHHHhCCcC
Confidence 69999999999999999753
No 494
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.32 E-value=0.099 Score=45.10 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+|+.+|...
T Consensus 105 ~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 105 SGKPGTGKNHLAAAICNE 122 (244)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 389999999999998875
No 495
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.32 E-value=0.025 Score=47.92 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 496
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.31 E-value=0.037 Score=45.41 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++||||+|+++.|....
T Consensus 8 ~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 8 SGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 5999999999999999874
No 497
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.30 E-value=0.026 Score=47.86 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|..|+|||||+++|.|-.
T Consensus 35 lG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 35 LGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999975
No 498
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.30 E-value=0.1 Score=46.14 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=65.6
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCccEEEEEEecCCcCCCHHHHHHHH--HHHHhcCcCcCCcEEEEEeCc
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITR--AITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~-~~~d~iL~V~~~d~~r~~~~d~~~l~--~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+.++|.||.. ++ |...+.. .--|+.|+++..+......+..+.+. .+.++ ++++++-||.
T Consensus 126 HVSfVDCPGHD--------iL--MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------khiiilQNKi 189 (466)
T KOG0466|consen 126 HVSFVDCPGHD--------IL--MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------KHIIILQNKI 189 (466)
T ss_pred EEEeccCCchH--------HH--HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------ceEEEEechh
Confidence 57899999972 21 2222211 12266665543332222222222232 23333 8999999999
Q ss_pred cCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 024586 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 200 (265)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~ 200 (265)
|+.. +....++ -+.+++++..... ..-|++.++..- .+. ++.+.+.|....
T Consensus 190 Dli~-e~~A~eq-----~e~I~kFi~~t~a--------e~aPiiPisAQl-------------kyN--Id~v~eyivkkI 240 (466)
T KOG0466|consen 190 DLIK-ESQALEQ-----HEQIQKFIQGTVA--------EGAPIIPISAQL-------------KYN--IDVVCEYIVKKI 240 (466)
T ss_pred hhhh-HHHHHHH-----HHHHHHHHhcccc--------CCCceeeehhhh-------------ccC--hHHHHHHHHhcC
Confidence 9963 2222222 2567777754311 123444444320 111 788888888888
Q ss_pred hCCCcceeccccc
Q 024586 201 LNGSKALLVDKKL 213 (265)
Q Consensus 201 ~~~~~~~~~~~~~ 213 (265)
|---|.+.....+
T Consensus 241 PvPvRdf~s~prl 253 (466)
T KOG0466|consen 241 PVPVRDFTSPPRL 253 (466)
T ss_pred CCCccccCCCCcE
Confidence 7776766665543
No 499
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.30 E-value=0.18 Score=43.31 Aligned_cols=91 Identities=23% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY 81 (265)
Q Consensus 2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~ 81 (265)
|.-|.|||||+.+++++-. ..+.+ ..+++..+ +.+.| ..++.+ ....-.+|||
T Consensus 92 GaRGtGKSSLVKA~~~e~~-------~~glr--LVEV~k~d----l~~Lp----------~l~~~L----r~~~~kFIlF 144 (287)
T COG2607 92 GARGTGKSSLVKALLNEYA-------DEGLR--LVEVDKED----LATLP----------DLVELL----RARPEKFILF 144 (287)
T ss_pred cCCCCChHHHHHHHHHHHH-------hcCCe--EEEEcHHH----HhhHH----------HHHHHH----hcCCceEEEE
Confidence 7889999999999998532 11111 11111100 12222 222333 3345678888
Q ss_pred EEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 82 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 82 V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
|++++= .-.+...+.++.+.+..-...-.+++|..|--
T Consensus 145 cDDLSF-e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 145 CDDLSF-EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ecCCCC-CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 865542 12234455555555433234445677776644
No 500
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.30 E-value=0.026 Score=46.85 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 33 ~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999975
Done!