Query 024586
Match_columns 265
No_of_seqs 290 out of 2362
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 10:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 100.0 2.5E-33 8.7E-38 242.7 16.9 215 1-215 42-256 (262)
2 1h65_A Chloroplast outer envel 100.0 4.4E-33 1.5E-37 242.1 17.1 221 1-222 45-265 (270)
3 3lxx_A GTPase IMAP family memb 99.9 2.4E-22 8.4E-27 170.9 13.4 144 1-149 35-182 (239)
4 3lxw_A GTPase IMAP family memb 99.9 2.9E-21 1E-25 165.5 14.3 144 1-149 27-176 (247)
5 2xtp_A GTPase IMAP family memb 99.8 7.7E-18 2.6E-22 144.7 18.0 181 1-208 28-214 (260)
6 4dhe_A Probable GTP-binding pr 99.7 9.4E-17 3.2E-21 134.0 13.6 117 1-123 35-157 (223)
7 3iev_A GTP-binding protein ERA 99.7 3.6E-16 1.2E-20 138.0 16.7 115 1-123 16-135 (308)
8 1wf3_A GTP-binding protein; GT 99.7 7E-16 2.4E-20 135.8 15.8 117 1-123 13-130 (301)
9 2dyk_A GTP-binding protein; GT 99.6 2.9E-15 9.8E-20 118.0 13.8 115 1-123 7-121 (161)
10 3t5d_A Septin-7; GTP-binding p 99.6 1.4E-15 4.7E-20 131.9 12.5 117 1-123 14-157 (274)
11 1svi_A GTP-binding protein YSX 99.6 6.7E-15 2.3E-19 119.9 15.6 115 1-124 29-148 (195)
12 2gj8_A MNME, tRNA modification 99.6 2E-15 6.8E-20 121.6 12.2 118 1-123 10-128 (172)
13 2qu8_A Putative nucleolar GTP- 99.6 9E-15 3.1E-19 122.9 16.4 121 1-127 35-159 (228)
14 4dcu_A GTP-binding protein ENG 99.6 8.3E-16 2.9E-20 142.6 10.7 126 1-132 201-328 (456)
15 3pqc_A Probable GTP-binding pr 99.6 1.7E-14 6E-19 117.1 16.9 114 1-123 29-146 (195)
16 2hjg_A GTP-binding protein ENG 99.6 7.9E-16 2.7E-20 142.0 9.1 125 1-131 181-307 (436)
17 1mky_A Probable GTP-binding pr 99.6 6.5E-15 2.2E-19 136.0 14.1 115 1-123 7-123 (439)
18 3iby_A Ferrous iron transport 99.6 5.7E-15 2E-19 127.0 10.3 115 1-124 7-124 (256)
19 2g6b_A RAS-related protein RAB 99.6 1.8E-14 6.1E-19 115.6 12.5 117 1-128 16-134 (180)
20 2lkc_A Translation initiation 99.6 1.9E-14 6.5E-19 115.3 11.8 107 1-123 14-120 (178)
21 3i8s_A Ferrous iron transport 99.6 1.3E-14 4.3E-19 126.0 11.5 114 1-123 9-125 (274)
22 1z2a_A RAS-related protein RAB 99.6 4.6E-14 1.6E-18 111.7 13.4 114 1-127 11-126 (168)
23 1mky_A Probable GTP-binding pr 99.6 3E-14 1E-18 131.5 14.1 112 1-124 186-306 (439)
24 1z0j_A RAB-22, RAS-related pro 99.6 1.6E-14 5.6E-19 114.5 10.5 112 1-125 12-126 (170)
25 1g16_A RAS-related protein SEC 99.6 3.5E-14 1.2E-18 112.6 12.4 111 1-123 9-121 (170)
26 1z0f_A RAB14, member RAS oncog 99.6 9.7E-14 3.3E-18 110.9 14.7 114 1-127 21-137 (179)
27 2erx_A GTP-binding protein DI- 99.6 3.1E-14 1E-18 113.0 11.6 116 1-127 9-126 (172)
28 2wji_A Ferrous iron transport 99.6 4.7E-14 1.6E-18 112.5 12.7 113 1-123 9-121 (165)
29 1z08_A RAS-related protein RAB 99.5 2.6E-14 9E-19 113.5 10.7 117 1-129 12-130 (170)
30 2fg5_A RAB-22B, RAS-related pr 99.5 2E-14 6.7E-19 117.4 10.1 113 1-124 29-142 (192)
31 3tw8_B RAS-related protein RAB 99.5 2.5E-14 8.4E-19 114.7 10.4 113 1-126 15-129 (181)
32 3clv_A RAB5 protein, putative; 99.5 9.6E-14 3.3E-18 113.0 13.8 107 1-122 13-159 (208)
33 3tkl_A RAS-related protein RAB 99.5 4.6E-14 1.6E-18 114.9 11.7 117 1-129 22-140 (196)
34 3a1s_A Iron(II) transport prot 99.5 8.1E-14 2.8E-18 119.9 13.6 113 1-123 11-123 (258)
35 4dsu_A GTPase KRAS, isoform 2B 99.5 1.7E-13 5.8E-18 110.6 14.8 111 1-123 10-122 (189)
36 2a9k_A RAS-related protein RAL 99.5 1.4E-13 4.7E-18 110.8 14.2 115 1-127 24-140 (187)
37 4djt_A GTP-binding nuclear pro 99.5 4.9E-14 1.7E-18 117.1 11.3 111 1-124 17-131 (218)
38 3qq5_A Small GTP-binding prote 99.5 1.3E-14 4.5E-19 133.1 8.4 115 1-125 40-155 (423)
39 3kkq_A RAS-related protein M-R 99.5 1.8E-13 6E-18 110.3 13.9 118 1-130 24-143 (183)
40 4dcu_A GTP-binding protein ENG 99.5 1.3E-14 4.6E-19 134.5 8.0 115 1-123 29-144 (456)
41 1upt_A ARL1, ADP-ribosylation 99.5 9.1E-14 3.1E-18 110.4 11.8 109 1-124 13-122 (171)
42 2y8e_A RAB-protein 6, GH09086P 99.5 5.6E-14 1.9E-18 112.3 10.6 115 1-127 20-136 (179)
43 2hxs_A RAB-26, RAS-related pro 99.5 6.3E-14 2.2E-18 112.2 10.8 114 1-124 12-129 (178)
44 3cph_A RAS-related protein SEC 99.5 1.2E-13 4.1E-18 114.0 12.5 111 1-123 26-138 (213)
45 3gee_A MNME, tRNA modification 99.5 7.9E-15 2.7E-19 136.6 5.8 114 1-124 239-357 (476)
46 2fn4_A P23, RAS-related protei 99.5 1.3E-13 4.3E-18 110.5 12.1 115 1-127 15-131 (181)
47 2bcg_Y Protein YP2, GTP-bindin 99.5 1.2E-13 4.1E-18 113.7 12.3 116 1-128 14-131 (206)
48 2hjg_A GTP-binding protein ENG 99.5 1.7E-14 5.7E-19 133.1 7.7 116 1-124 9-125 (436)
49 2efe_B Small GTP-binding prote 99.5 1.8E-13 6.2E-18 109.8 12.9 117 1-129 18-136 (181)
50 2ce2_X GTPase HRAS; signaling 99.5 2.6E-13 8.9E-18 106.7 13.6 112 1-124 9-122 (166)
51 3t5g_A GTP-binding protein RHE 99.5 1.4E-13 4.7E-18 110.8 12.2 118 1-130 12-131 (181)
52 2gf0_A GTP-binding protein DI- 99.5 1.7E-13 5.7E-18 111.8 12.6 113 1-124 14-128 (199)
53 1u8z_A RAS-related protein RAL 99.5 1.6E-13 5.6E-18 108.2 12.1 116 1-128 10-127 (168)
54 1ksh_A ARF-like protein 2; sma 99.5 9.2E-14 3.2E-18 112.4 10.9 110 1-124 24-133 (186)
55 1zj6_A ADP-ribosylation factor 99.5 3.5E-13 1.2E-17 109.2 14.4 109 1-123 22-130 (187)
56 3cpj_B GTP-binding protein YPT 99.5 1.4E-13 4.8E-18 115.1 12.3 112 1-124 19-132 (223)
57 3q85_A GTP-binding protein REM 99.5 2.1E-13 7.2E-18 108.2 12.7 118 1-129 8-128 (169)
58 1xzp_A Probable tRNA modificat 99.5 2.3E-14 7.7E-19 133.7 7.9 109 1-123 249-363 (482)
59 2e87_A Hypothetical protein PH 99.5 3.2E-13 1.1E-17 121.4 15.2 117 1-123 173-293 (357)
60 4bas_A ADP-ribosylation factor 99.5 1.9E-13 6.6E-18 111.4 12.3 111 1-123 23-140 (199)
61 1lnz_A SPO0B-associated GTP-bi 99.5 1.2E-13 4.3E-18 123.4 12.0 116 1-123 164-287 (342)
62 1ega_A Protein (GTP-binding pr 99.5 1.1E-13 3.8E-18 121.6 11.4 110 1-123 14-129 (301)
63 1kao_A RAP2A; GTP-binding prot 99.5 3.1E-13 1E-17 106.5 12.8 115 1-127 9-125 (167)
64 1ek0_A Protein (GTP-binding pr 99.5 1.3E-13 4.6E-18 109.0 10.6 113 1-125 9-123 (170)
65 1r8s_A ADP-ribosylation factor 99.5 2.3E-13 7.8E-18 107.5 11.9 108 1-123 6-114 (164)
66 2bov_A RAla, RAS-related prote 99.5 1.5E-13 5.2E-18 112.6 11.2 117 1-129 20-138 (206)
67 2hup_A RAS-related protein RAB 99.5 2E-13 6.8E-18 112.5 11.8 117 1-129 35-153 (201)
68 2x77_A ADP-ribosylation factor 99.5 1.2E-13 4.2E-18 112.0 10.3 108 1-123 28-136 (189)
69 3reg_A RHO-like small GTPase; 99.5 1.4E-13 4.9E-18 112.2 10.6 110 1-124 29-141 (194)
70 2a5j_A RAS-related protein RAB 99.5 1.9E-13 6.6E-18 111.3 11.4 112 1-124 27-140 (191)
71 3geh_A MNME, tRNA modification 99.5 1.6E-14 5.3E-19 134.1 5.4 114 1-124 230-344 (462)
72 1wms_A RAB-9, RAB9, RAS-relate 99.5 6.4E-13 2.2E-17 106.2 14.2 113 1-123 13-129 (177)
73 3k53_A Ferrous iron transport 99.5 1.3E-13 4.4E-18 119.2 10.8 114 1-123 9-122 (271)
74 2nzj_A GTP-binding protein REM 99.5 8.7E-14 3E-18 110.9 8.9 119 1-129 10-130 (175)
75 3q72_A GTP-binding protein RAD 99.5 7.4E-14 2.5E-18 110.5 8.3 116 1-129 8-125 (166)
76 2b6h_A ADP-ribosylation factor 99.5 4.9E-13 1.7E-17 109.3 13.4 108 1-123 35-143 (192)
77 2il1_A RAB12; G-protein, GDP, 99.5 1.7E-13 5.8E-18 111.9 10.6 115 1-127 32-148 (192)
78 1c1y_A RAS-related protein RAP 99.5 2.2E-13 7.5E-18 107.6 10.7 113 1-125 9-123 (167)
79 2wjg_A FEOB, ferrous iron tran 99.5 2.9E-13 9.9E-18 109.5 11.6 113 1-123 13-125 (188)
80 1r2q_A RAS-related protein RAB 99.5 8.8E-14 3E-18 110.1 8.3 112 1-124 12-125 (170)
81 2gf9_A RAS-related protein RAB 99.5 2.9E-13 9.9E-18 109.9 11.6 114 1-126 28-143 (189)
82 1zd9_A ADP-ribosylation factor 99.5 7.1E-13 2.4E-17 107.7 13.8 110 1-123 28-137 (188)
83 3b1v_A Ferrous iron uptake tra 99.5 2.7E-13 9.3E-18 117.5 11.9 112 1-123 9-120 (272)
84 1fzq_A ADP-ribosylation factor 99.5 3.8E-13 1.3E-17 108.8 11.8 108 1-123 22-130 (181)
85 2bme_A RAB4A, RAS-related prot 99.5 1.1E-13 3.8E-18 111.7 8.4 115 1-127 16-132 (186)
86 2fu5_C RAS-related protein RAB 99.5 5.1E-14 1.7E-18 113.5 6.3 117 1-129 14-132 (183)
87 1z06_A RAS-related protein RAB 99.5 6.9E-13 2.4E-17 107.7 13.0 114 1-125 26-142 (189)
88 2oil_A CATX-8, RAS-related pro 99.5 1.4E-13 4.9E-18 112.0 9.0 113 1-125 31-145 (193)
89 2o52_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 113.2 8.8 116 1-128 31-148 (200)
90 1moz_A ARL1, ADP-ribosylation 99.5 1.4E-13 4.8E-18 110.8 8.4 109 1-123 24-132 (183)
91 2atv_A RERG, RAS-like estrogen 99.4 8.8E-13 3E-17 107.8 12.7 115 1-128 34-150 (196)
92 2q3h_A RAS homolog gene family 99.4 3.3E-13 1.1E-17 110.5 10.0 109 1-123 26-137 (201)
93 2h57_A ADP-ribosylation factor 99.4 3E-13 1E-17 109.9 9.7 111 1-123 27-139 (190)
94 2yc2_C IFT27, small RAB-relate 99.4 1.9E-13 6.5E-18 112.1 8.5 115 1-124 26-146 (208)
95 3con_A GTPase NRAS; structural 99.4 7.2E-13 2.5E-17 107.4 11.8 112 1-124 27-140 (190)
96 2atx_A Small GTP binding prote 99.4 2.6E-13 9.1E-18 110.5 9.2 109 1-123 24-135 (194)
97 1zbd_A Rabphilin-3A; G protein 99.4 7.5E-13 2.6E-17 108.6 11.6 115 1-127 14-130 (203)
98 2fv8_A H6, RHO-related GTP-bin 99.4 2.4E-13 8.1E-18 112.3 8.4 109 1-123 31-142 (207)
99 3o47_A ADP-ribosylation factor 99.4 9.8E-13 3.3E-17 117.0 12.9 108 1-123 171-279 (329)
100 3r7w_A Gtpase1, GTP-binding pr 99.4 5.6E-13 1.9E-17 117.4 10.9 118 1-123 9-128 (307)
101 3bc1_A RAS-related protein RAB 99.4 5.5E-13 1.9E-17 107.8 10.1 113 1-124 17-141 (195)
102 1m2o_B GTP-binding protein SAR 99.4 5.3E-13 1.8E-17 108.9 10.0 109 1-123 29-137 (190)
103 3oes_A GTPase rhebl1; small GT 99.4 2.7E-13 9.2E-18 111.4 8.1 116 1-128 30-147 (201)
104 2ged_A SR-beta, signal recogni 99.4 2.5E-13 8.6E-18 110.4 7.9 130 1-144 54-188 (193)
105 1jwy_B Dynamin A GTPase domain 99.4 8E-13 2.7E-17 116.2 11.6 77 42-125 130-213 (315)
106 1mh1_A RAC1; GTP-binding, GTPa 99.4 2.5E-13 8.7E-18 109.3 7.6 109 1-123 11-122 (186)
107 3c5c_A RAS-like protein 12; GD 99.4 1.9E-12 6.4E-17 105.3 12.8 115 1-127 27-144 (187)
108 2h17_A ADP-ribosylation factor 99.4 2.7E-13 9.2E-18 109.5 7.6 109 1-123 27-135 (181)
109 2fh5_B SR-beta, signal recogni 99.4 3.2E-12 1.1E-16 105.7 14.3 109 1-124 13-129 (214)
110 2p5s_A RAS and EF-hand domain 99.4 4.2E-13 1.4E-17 110.1 8.8 111 1-123 34-146 (199)
111 2j1l_A RHO-related GTP-binding 99.4 5E-13 1.7E-17 111.1 9.2 109 1-123 40-151 (214)
112 2gco_A H9, RHO-related GTP-bin 99.4 6.8E-13 2.3E-17 109.0 9.5 109 1-123 31-142 (201)
113 2qtf_A Protein HFLX, GTP-bindi 99.4 1.3E-12 4.5E-17 117.7 12.1 118 1-123 185-305 (364)
114 4a9a_A Ribosome-interacting GT 99.4 3.2E-13 1.1E-17 121.9 8.0 112 1-122 78-194 (376)
115 1ky3_A GTP-binding protein YPT 99.4 4.7E-13 1.6E-17 107.2 8.1 113 1-123 14-131 (182)
116 1f6b_A SAR1; gtpases, N-termin 99.4 6.6E-13 2.3E-17 109.1 9.1 108 1-123 31-139 (198)
117 1vg8_A RAS-related protein RAB 99.4 8.8E-13 3E-17 108.2 9.8 113 1-123 14-130 (207)
118 4dkx_A RAS-related protein RAB 99.4 1.3E-12 4.6E-17 109.4 10.8 118 1-131 19-139 (216)
119 2ew1_A RAS-related protein RAB 99.4 6.2E-13 2.1E-17 109.8 8.6 115 1-127 32-148 (201)
120 2cxx_A Probable GTP-binding pr 99.4 2.1E-12 7E-17 104.4 11.2 111 1-123 7-135 (190)
121 2qag_A Septin-2, protein NEDD5 99.4 8.1E-13 2.8E-17 119.0 9.3 117 1-123 43-187 (361)
122 3dz8_A RAS-related protein RAB 99.4 4.3E-13 1.5E-17 109.2 6.8 114 1-125 29-143 (191)
123 3llu_A RAS-related GTP-binding 99.4 3.5E-12 1.2E-16 104.4 11.9 116 1-123 26-142 (196)
124 3cbq_A GTP-binding protein REM 99.4 3.9E-12 1.3E-16 104.3 12.2 120 1-130 29-150 (195)
125 3l0i_B RAS-related protein RAB 99.4 6.8E-14 2.3E-18 114.8 1.6 113 1-125 39-153 (199)
126 2iwr_A Centaurin gamma 1; ANK 99.4 4.8E-12 1.6E-16 101.3 12.4 106 1-123 13-121 (178)
127 2j0v_A RAC-like GTP-binding pr 99.4 7.3E-13 2.5E-17 109.5 7.7 109 1-123 15-126 (212)
128 4gzl_A RAS-related C3 botulinu 99.4 3.4E-13 1.2E-17 111.3 5.7 109 1-123 36-147 (204)
129 1x3s_A RAS-related protein RAB 99.4 2.3E-12 7.8E-17 104.5 10.5 112 1-123 21-134 (195)
130 3t34_A Dynamin-related protein 99.4 3.6E-12 1.2E-16 114.6 12.7 80 42-127 135-220 (360)
131 3bwd_D RAC-like GTP-binding pr 99.4 2.9E-13 1E-17 108.7 4.2 109 1-123 14-125 (182)
132 3gj0_A GTP-binding nuclear pro 99.4 4.7E-13 1.6E-17 111.5 5.4 112 1-124 21-133 (221)
133 1m7b_A RND3/RHOE small GTP-bin 99.4 9.7E-13 3.3E-17 106.4 7.0 109 1-123 13-124 (184)
134 2aka_B Dynamin-1; fusion prote 99.4 4E-12 1.4E-16 110.7 11.2 76 42-125 124-207 (299)
135 2qpt_A EH domain-containing pr 99.3 1.6E-12 5.6E-17 123.1 9.3 116 1-123 71-231 (550)
136 2j69_A Bacterial dynamin-like 99.3 1.2E-12 4.2E-17 127.2 7.8 111 1-124 75-244 (695)
137 3lvq_E ARF-GAP with SH3 domain 99.3 4.3E-12 1.5E-16 118.6 11.2 108 1-123 328-436 (497)
138 2f7s_A C25KG, RAS-related prot 99.3 1.5E-12 5E-17 108.0 6.9 111 1-124 31-155 (217)
139 2x2e_A Dynamin-1; nitration, h 99.3 3.7E-12 1.3E-16 114.3 9.8 76 42-124 129-211 (353)
140 2g3y_A GTP-binding protein GEM 99.3 1.4E-11 4.7E-16 102.8 12.6 114 1-124 43-159 (211)
141 3q3j_B RHO-related GTP-binding 99.3 2.3E-12 7.7E-17 107.3 7.7 109 1-123 33-144 (214)
142 1nrj_B SR-beta, signal recogni 99.3 4.6E-12 1.6E-16 105.1 9.6 113 1-124 18-134 (218)
143 1gwn_A RHO-related GTP-binding 99.3 1.8E-12 6.1E-17 107.3 7.0 109 1-123 34-145 (205)
144 3t1o_A Gliding protein MGLA; G 99.3 2.8E-12 9.7E-17 104.0 7.9 113 1-123 20-148 (198)
145 3ihw_A Centg3; RAS, centaurin, 99.3 9.2E-12 3.1E-16 101.1 10.8 105 1-123 26-132 (184)
146 2cjw_A GTP-binding protein GEM 99.3 1E-11 3.5E-16 101.5 10.3 114 1-124 12-128 (192)
147 1wb1_A Translation elongation 99.3 2.2E-11 7.4E-16 113.7 13.7 108 1-123 25-138 (482)
148 1wxq_A GTP-binding protein; st 99.3 4.6E-12 1.6E-16 115.4 7.6 83 1-87 6-113 (397)
149 3th5_A RAS-related C3 botulinu 98.9 3.5E-13 1.2E-17 110.8 0.0 109 1-123 36-147 (204)
150 3j2k_7 ERF3, eukaryotic polype 99.3 3.8E-11 1.3E-15 110.7 13.6 110 1-123 23-168 (439)
151 3sjy_A Translation initiation 99.3 2.4E-11 8.3E-16 110.8 12.2 110 1-123 14-142 (403)
152 3zvr_A Dynamin-1; hydrolase, D 99.3 2.6E-11 8.8E-16 118.0 12.9 118 1-126 57-233 (772)
153 3p26_A Elongation factor 1 alp 99.3 2.3E-11 7.7E-16 113.6 10.9 111 1-124 39-185 (483)
154 2f9l_A RAB11B, member RAS onco 99.2 4.9E-11 1.7E-15 97.7 11.2 112 1-124 11-124 (199)
155 2zej_A Dardarin, leucine-rich 99.2 8.7E-12 3E-16 101.0 6.0 111 1-123 8-125 (184)
156 2c78_A Elongation factor TU-A; 99.2 1.5E-11 5.2E-16 112.2 8.3 108 1-123 17-141 (405)
157 2wkq_A NPH1-1, RAS-related C3 99.2 8.7E-12 3E-16 109.7 6.4 109 1-123 161-272 (332)
158 1zun_B Sulfate adenylate trans 99.2 1E-10 3.4E-15 107.8 12.3 109 1-123 30-170 (434)
159 1pui_A ENGB, probable GTP-bind 99.2 8.4E-11 2.9E-15 96.7 10.6 114 1-123 32-150 (210)
160 3tr5_A RF-3, peptide chain rel 99.2 4.5E-11 1.5E-15 112.6 9.5 108 1-123 19-147 (528)
161 2elf_A Protein translation elo 99.2 1.9E-10 6.6E-15 103.8 13.1 97 1-122 27-125 (370)
162 1kk1_A EIF2gamma; initiation o 99.2 2.8E-10 9.5E-15 104.0 14.2 110 1-123 16-150 (410)
163 1udx_A The GTP-binding protein 99.2 3.3E-10 1.1E-14 103.6 14.4 115 1-123 163-282 (416)
164 1oix_A RAS-related protein RAB 99.2 1.8E-10 6E-15 94.0 10.9 112 1-124 35-148 (191)
165 3dpu_A RAB family protein; roc 99.2 1.9E-10 6.5E-15 108.6 12.7 112 1-129 47-169 (535)
166 3izq_1 HBS1P, elongation facto 99.1 4.6E-11 1.6E-15 114.4 7.4 111 1-124 173-319 (611)
167 2xex_A Elongation factor G; GT 99.1 2.6E-10 8.9E-15 110.8 12.4 108 1-123 16-140 (693)
168 1s0u_A EIF-2-gamma, translatio 99.1 1E-09 3.5E-14 100.2 14.5 111 1-124 14-149 (408)
169 2qag_C Septin-7; cell cycle, c 99.1 1.3E-10 4.5E-15 106.4 8.3 117 1-123 37-180 (418)
170 2h5e_A Peptide chain release f 99.1 5.3E-10 1.8E-14 105.4 12.0 108 1-123 19-147 (529)
171 3izy_P Translation initiation 99.1 8.2E-12 2.8E-16 117.6 -0.5 108 1-124 10-118 (537)
172 1d2e_A Elongation factor TU (E 99.1 3.4E-10 1.2E-14 103.0 9.8 108 1-123 9-132 (397)
173 1f60_A Elongation factor EEF1A 99.1 6.5E-11 2.2E-15 109.8 4.7 109 1-123 13-158 (458)
174 2ywe_A GTP-binding protein LEP 99.0 1.3E-09 4.4E-14 103.9 12.8 108 1-123 12-138 (600)
175 3ec1_A YQEH GTPase; atnos1, at 99.0 7.2E-12 2.5E-16 113.1 -2.8 116 1-125 168-289 (369)
176 1zo1_I IF2, translation initia 99.0 3.8E-11 1.3E-15 112.1 1.8 107 1-123 10-116 (501)
177 1g7s_A Translation initiation 99.0 7.2E-10 2.5E-14 105.7 10.0 107 1-123 11-135 (594)
178 3r7w_B Gtpase2, GTP-binding pr 99.0 1.3E-09 4.5E-14 96.3 11.0 113 1-123 5-119 (331)
179 3h2y_A GTPase family protein; 99.0 1.7E-11 5.6E-16 110.7 -1.4 115 1-124 166-287 (368)
180 3cb4_D GTP-binding protein LEP 99.0 1.2E-09 4.1E-14 104.2 11.1 108 1-123 10-136 (599)
181 1jny_A EF-1-alpha, elongation 99.0 3.5E-10 1.2E-14 104.1 7.2 111 1-124 12-158 (435)
182 2dby_A GTP-binding protein; GD 99.0 1.2E-09 4.1E-14 98.4 10.2 80 1-87 7-111 (368)
183 1dar_A EF-G, elongation factor 99.0 1.2E-09 4E-14 106.1 10.8 108 1-123 18-142 (691)
184 3sop_A Neuronal-specific septi 99.0 1.7E-09 5.8E-14 93.5 10.6 117 1-123 8-153 (270)
185 3mca_A HBS1, elongation factor 99.0 2.8E-11 9.6E-16 115.5 -1.2 110 1-123 183-328 (592)
186 1jal_A YCHF protein; nucleotid 99.0 4E-10 1.4E-14 101.2 5.8 80 1-87 8-108 (363)
187 2rdo_7 EF-G, elongation factor 99.0 5.8E-09 2E-13 101.5 13.8 108 1-123 16-147 (704)
188 1r5b_A Eukaryotic peptide chai 98.9 7.2E-10 2.5E-14 103.0 6.1 110 1-123 49-194 (467)
189 2qnr_A Septin-2, protein NEDD5 98.9 1.8E-09 6.3E-14 94.7 8.1 117 1-123 24-168 (301)
190 2qag_B Septin-6, protein NEDD5 98.9 2.7E-09 9.3E-14 97.5 8.5 117 1-123 48-189 (427)
191 1n0u_A EF-2, elongation factor 98.9 3.7E-09 1.3E-13 104.7 9.6 108 1-123 25-163 (842)
192 3avx_A Elongation factor TS, e 98.9 5.6E-09 1.9E-13 105.1 9.8 108 1-123 302-425 (1289)
193 2ohf_A Protein OLA1, GTP-bindi 98.9 2.7E-09 9.2E-14 96.7 6.6 79 1-86 28-127 (396)
194 2dy1_A Elongation factor G; tr 98.9 2.6E-08 8.7E-13 96.4 13.7 108 1-123 15-139 (665)
195 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 4.8E-09 1.6E-13 95.1 7.8 80 1-86 26-126 (392)
196 1puj_A YLQF, conserved hypothe 98.8 2E-09 6.7E-14 93.6 5.0 59 1-62 126-184 (282)
197 3vqt_A RF-3, peptide chain rel 98.8 4.8E-08 1.6E-12 92.4 14.5 116 1-134 37-173 (548)
198 3p32_A Probable GTPase RV1496/ 98.8 7E-10 2.4E-14 99.5 0.4 61 41-123 170-230 (355)
199 2www_A Methylmalonic aciduria 98.7 1.7E-09 5.7E-14 96.8 1.6 62 40-123 164-225 (349)
200 1tq4_A IIGP1, interferon-induc 98.7 4.7E-08 1.6E-12 89.2 10.4 109 1-122 75-187 (413)
201 1f5n_A Interferon-induced guan 98.7 2.3E-08 7.9E-13 95.0 7.4 94 1-103 44-147 (592)
202 2p67_A LAO/AO transport system 98.6 2.5E-08 8.6E-13 88.9 4.9 62 40-123 146-207 (341)
203 3cnl_A YLQF, putative uncharac 98.6 1.6E-08 5.4E-13 86.9 2.7 55 1-58 105-159 (262)
204 3c5h_A Glucocorticoid receptor 98.6 2.4E-08 8.4E-13 85.2 3.8 47 75-123 162-211 (255)
205 2j37_W Signal recognition part 98.5 2.5E-07 8.4E-12 86.5 9.4 111 1-123 107-253 (504)
206 2qm8_A GTPase/ATPase; G protei 98.5 4.4E-08 1.5E-12 87.2 3.7 61 40-123 145-206 (337)
207 3szr_A Interferon-induced GTP- 98.5 9E-07 3.1E-11 84.7 11.7 76 43-124 147-228 (608)
208 3j25_A Tetracycline resistance 98.4 1E-07 3.6E-12 91.7 4.4 108 1-123 8-132 (638)
209 1yrb_A ATP(GTP)binding protein 98.4 1.4E-07 4.9E-12 80.0 4.3 24 1-24 20-48 (262)
210 4fn5_A EF-G 1, elongation fact 98.4 2.4E-06 8.1E-11 83.2 13.4 116 1-134 19-158 (709)
211 3dm5_A SRP54, signal recogniti 98.3 9.6E-07 3.3E-11 81.1 7.6 72 41-123 181-252 (443)
212 2wsm_A Hydrogenase expression/ 98.3 2E-07 6.7E-12 77.1 1.5 18 1-18 36-53 (221)
213 2v3c_C SRP54, signal recogniti 98.2 1.2E-06 4.1E-11 80.4 6.4 73 41-123 179-251 (432)
214 3kl4_A SRP54, signal recogniti 98.1 4.2E-06 1.4E-10 76.7 7.3 73 42-123 179-251 (433)
215 3q5d_A Atlastin-1; G protein, 98.0 9.3E-06 3.2E-10 74.7 6.4 97 1-103 73-195 (447)
216 1j8m_F SRP54, signal recogniti 97.8 5.7E-05 2E-09 65.8 8.7 74 41-123 179-252 (297)
217 1t9h_A YLOQ, probable GTPase E 97.7 8.9E-06 3E-10 71.3 0.9 53 1-57 179-238 (307)
218 2xxa_A Signal recognition part 97.6 8.7E-05 3E-09 68.0 7.3 72 41-123 182-253 (433)
219 3e70_C DPA, signal recognition 97.6 0.00011 3.7E-09 64.9 7.5 71 42-123 211-281 (328)
220 1rj9_A FTSY, signal recognitio 97.6 0.00021 7.1E-09 62.4 9.3 74 42-123 184-260 (304)
221 2yv5_A YJEQ protein; hydrolase 97.6 7.8E-05 2.7E-09 65.0 5.4 52 1-56 171-229 (302)
222 2yhs_A FTSY, cell division pro 97.5 0.00023 8E-09 66.0 7.9 72 41-123 374-451 (503)
223 1u0l_A Probable GTPase ENGC; p 97.5 0.0001 3.5E-09 64.2 4.8 54 1-57 175-235 (301)
224 2rcn_A Probable GTPase ENGC; Y 97.4 5.6E-05 1.9E-09 67.5 2.6 52 1-55 221-280 (358)
225 2px0_A Flagellar biosynthesis 97.3 0.00021 7.1E-09 62.2 5.4 72 41-123 181-252 (296)
226 1zcb_A G alpha I/13; GTP-bindi 97.1 0.0004 1.4E-08 62.1 4.9 78 35-123 193-281 (362)
227 1vma_A Cell division protein F 97.1 0.00022 7.6E-09 62.3 2.7 72 41-123 185-262 (306)
228 1cip_A Protein (guanine nucleo 97.1 0.00041 1.4E-08 61.8 4.5 81 33-123 183-273 (353)
229 2ffh_A Protein (FFH); SRP54, s 97.1 0.00027 9.4E-09 64.5 3.4 72 41-123 179-250 (425)
230 4dzz_A Plasmid partitioning pr 97.1 0.00077 2.6E-08 54.4 5.7 68 42-122 75-142 (206)
231 1azs_C GS-alpha; complex (lyas 97.0 0.00068 2.3E-08 61.4 5.5 78 35-122 209-296 (402)
232 4fid_A G protein alpha subunit 96.9 0.0021 7.3E-08 56.8 7.9 80 33-123 151-241 (340)
233 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0044 1.5E-07 56.8 10.1 96 1-103 73-195 (457)
234 1zu4_A FTSY; GTPase, signal re 96.9 0.0015 5.2E-08 57.3 6.3 72 41-123 190-267 (320)
235 3ney_A 55 kDa erythrocyte memb 96.8 6.6E-05 2.3E-09 61.5 -2.6 51 1-53 25-76 (197)
236 1ls1_A Signal recognition part 96.7 0.0011 3.8E-08 57.5 4.1 72 41-123 179-250 (295)
237 3ohm_A Guanine nucleotide-bind 96.6 0.0017 5.8E-08 57.2 4.7 80 34-123 158-247 (327)
238 3b9q_A Chloroplast SRP recepto 96.6 0.0026 8.9E-08 55.3 5.8 18 1-18 106-123 (302)
239 2og2_A Putative signal recogni 96.6 0.0058 2E-07 54.5 8.0 18 1-18 163-180 (359)
240 2xtz_A Guanine nucleotide-bind 96.5 0.0018 6.3E-08 57.6 4.5 71 42-123 182-263 (354)
241 1lvg_A Guanylate kinase, GMP k 95.9 0.0022 7.5E-08 52.0 1.3 18 1-18 10-27 (198)
242 1kgd_A CASK, peripheral plasma 95.9 0.0023 7.9E-08 51.0 1.3 19 1-19 11-29 (180)
243 1ex7_A Guanylate kinase; subst 95.8 0.0011 3.7E-08 53.7 -0.8 19 1-19 7-25 (186)
244 1znw_A Guanylate kinase, GMP k 95.8 0.0024 8.3E-08 52.0 1.2 19 1-19 26-44 (207)
245 3tif_A Uncharacterized ABC tra 95.7 0.0035 1.2E-07 52.4 1.9 19 1-19 37-55 (235)
246 3cwq_A Para family chromosome 95.7 0.0089 3E-07 48.8 4.1 65 42-122 67-132 (209)
247 2pcj_A ABC transporter, lipopr 95.5 0.0039 1.3E-07 51.7 1.4 19 1-19 36-54 (224)
248 1ye8_A Protein THEP1, hypothet 95.5 0.0038 1.3E-07 49.9 1.3 19 1-19 6-24 (178)
249 1s96_A Guanylate kinase, GMP k 95.5 0.0038 1.3E-07 51.7 1.3 19 1-19 22-40 (219)
250 1z6g_A Guanylate kinase; struc 95.5 0.0038 1.3E-07 51.4 1.2 19 1-19 29-47 (218)
251 2kjq_A DNAA-related protein; s 95.5 0.02 6.9E-07 44.1 5.4 19 1-19 42-60 (149)
252 3a00_A Guanylate kinase, GMP k 95.5 0.0038 1.3E-07 49.9 1.1 19 1-19 7-25 (186)
253 4g1u_C Hemin import ATP-bindin 95.4 0.0052 1.8E-07 52.4 1.9 19 1-19 43-61 (266)
254 2onk_A Molybdate/tungstate ABC 95.4 0.0054 1.9E-07 51.5 2.0 19 1-19 30-48 (240)
255 3gfo_A Cobalt import ATP-bindi 95.4 0.0054 1.8E-07 52.6 2.0 19 1-19 40-58 (275)
256 2cbz_A Multidrug resistance-as 95.4 0.0053 1.8E-07 51.4 1.9 19 1-19 37-55 (237)
257 1b0u_A Histidine permease; ABC 95.4 0.0054 1.8E-07 52.1 2.0 19 1-19 38-56 (262)
258 1g6h_A High-affinity branched- 95.4 0.0054 1.8E-07 52.0 1.9 19 1-19 39-57 (257)
259 3tr0_A Guanylate kinase, GMP k 95.4 0.0044 1.5E-07 49.8 1.3 18 1-18 13-30 (205)
260 1sgw_A Putative ABC transporte 95.3 0.006 2.1E-07 50.3 2.0 19 1-19 41-59 (214)
261 1mv5_A LMRA, multidrug resista 95.3 0.006 2.1E-07 51.2 2.0 19 1-19 34-52 (243)
262 2ff7_A Alpha-hemolysin translo 95.3 0.006 2.1E-07 51.4 1.9 19 1-19 41-59 (247)
263 2pze_A Cystic fibrosis transme 95.3 0.0063 2.2E-07 50.6 2.0 19 1-19 40-58 (229)
264 1u0l_A Probable GTPase ENGC; p 95.2 0.026 8.9E-07 48.8 5.8 64 44-123 64-128 (301)
265 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0066 2.3E-07 51.2 1.9 18 1-18 35-52 (250)
266 4gp7_A Metallophosphoesterase; 95.2 0.0068 2.3E-07 47.8 1.9 18 1-18 15-32 (171)
267 2olj_A Amino acid ABC transpor 95.2 0.0068 2.3E-07 51.6 2.0 19 1-19 56-74 (263)
268 2qi9_C Vitamin B12 import ATP- 95.2 0.0069 2.3E-07 51.1 2.0 19 1-19 32-50 (249)
269 1vpl_A ABC transporter, ATP-bi 95.2 0.0069 2.4E-07 51.3 2.0 19 1-19 47-65 (256)
270 1ji0_A ABC transporter; ATP bi 95.2 0.0068 2.3E-07 50.8 1.9 19 1-19 38-56 (240)
271 2zu0_C Probable ATP-dependent 95.1 0.0074 2.5E-07 51.4 2.0 18 1-18 52-69 (267)
272 2ghi_A Transport protein; mult 95.1 0.0073 2.5E-07 51.3 1.9 19 1-19 52-70 (260)
273 2ixe_A Antigen peptide transpo 95.1 0.0077 2.6E-07 51.5 1.9 19 1-19 51-69 (271)
274 2nq2_C Hypothetical ABC transp 95.0 0.0079 2.7E-07 50.9 1.9 19 1-19 37-55 (253)
275 2ihy_A ABC transporter, ATP-bi 95.0 0.0081 2.8E-07 51.6 2.0 19 1-19 53-71 (279)
276 2yz2_A Putative ABC transporte 95.0 0.008 2.7E-07 51.2 1.9 19 1-19 39-57 (266)
277 1zp6_A Hypothetical protein AT 95.0 0.0078 2.7E-07 47.8 1.6 18 1-18 15-32 (191)
278 2eyu_A Twitching motility prot 95.0 0.0068 2.3E-07 51.5 1.3 18 1-18 31-48 (261)
279 3tau_A Guanylate kinase, GMP k 94.8 0.0098 3.4E-07 48.4 1.8 19 1-19 14-32 (208)
280 3c8u_A Fructokinase; YP_612366 94.8 0.0068 2.3E-07 49.3 0.7 18 1-18 28-45 (208)
281 1htw_A HI0065; nucleotide-bind 94.8 0.0085 2.9E-07 46.9 1.2 19 1-19 39-57 (158)
282 2pjz_A Hypothetical protein ST 94.7 0.011 3.8E-07 50.3 2.0 19 1-19 36-54 (263)
283 3tui_C Methionine import ATP-b 94.7 0.011 3.8E-07 52.7 2.0 19 1-19 60-78 (366)
284 3b85_A Phosphate starvation-in 94.6 0.0065 2.2E-07 49.8 0.2 18 1-18 28-45 (208)
285 3nh6_A ATP-binding cassette SU 94.5 0.0077 2.6E-07 52.5 0.6 19 1-19 86-104 (306)
286 1z47_A CYSA, putative ABC-tran 94.4 0.014 4.8E-07 51.9 1.9 19 1-19 47-65 (355)
287 3rlf_A Maltose/maltodextrin im 94.4 0.014 4.9E-07 52.3 2.0 19 1-19 35-53 (381)
288 2bbs_A Cystic fibrosis transme 94.4 0.012 4.1E-07 50.8 1.4 19 1-19 70-88 (290)
289 2v9p_A Replication protein E1; 94.3 0.011 3.9E-07 51.3 1.2 18 1-18 132-149 (305)
290 3asz_A Uridine kinase; cytidin 94.3 0.0099 3.4E-07 48.1 0.7 18 1-18 12-29 (211)
291 3fvq_A Fe(3+) IONS import ATP- 94.3 0.013 4.3E-07 52.2 1.4 19 1-19 36-54 (359)
292 2it1_A 362AA long hypothetical 94.3 0.016 5.3E-07 51.7 2.0 19 1-19 35-53 (362)
293 2yyz_A Sugar ABC transporter, 94.3 0.016 5.3E-07 51.7 1.9 19 1-19 35-53 (359)
294 1g29_1 MALK, maltose transport 94.2 0.016 5.5E-07 51.8 1.9 19 1-19 35-53 (372)
295 3jvv_A Twitching mobility prot 94.2 0.013 4.3E-07 52.2 1.2 18 1-18 129-146 (356)
296 3qf7_A RAD50; ABC-ATPase, ATPa 94.2 0.062 2.1E-06 47.8 5.7 16 1-16 29-44 (365)
297 2gza_A Type IV secretion syste 94.2 0.013 4.6E-07 52.0 1.3 19 1-19 181-199 (361)
298 1fnn_A CDC6P, cell division co 94.2 0.16 5.3E-06 44.6 8.3 18 1-18 50-67 (389)
299 2j41_A Guanylate kinase; GMP, 94.2 0.013 4.6E-07 46.9 1.2 19 1-19 12-30 (207)
300 1v43_A Sugar-binding transport 94.1 0.017 5.9E-07 51.6 2.0 19 1-19 43-61 (372)
301 3lnc_A Guanylate kinase, GMP k 94.1 0.01 3.6E-07 48.9 0.5 19 1-19 33-52 (231)
302 2bdt_A BH3686; alpha-beta prot 94.1 0.014 4.8E-07 46.4 1.2 17 1-17 8-24 (189)
303 2i3b_A HCR-ntpase, human cance 94.0 0.015 5.1E-07 46.9 1.2 19 1-19 7-25 (189)
304 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.014 4.7E-07 51.4 1.0 19 1-19 177-195 (330)
305 3d31_A Sulfate/molybdate ABC t 93.8 0.014 4.9E-07 51.7 0.7 19 1-19 32-50 (348)
306 2qor_A Guanylate kinase; phosp 93.8 0.022 7.7E-07 45.9 1.8 18 1-18 18-35 (204)
307 4a74_A DNA repair and recombin 93.7 0.015 5.1E-07 47.4 0.7 18 1-18 31-48 (231)
308 1kag_A SKI, shikimate kinase I 93.7 0.019 6.5E-07 44.7 1.3 18 1-18 10-27 (173)
309 1np6_A Molybdopterin-guanine d 93.7 0.019 6.6E-07 45.7 1.3 18 1-18 12-29 (174)
310 3aez_A Pantothenate kinase; tr 93.7 0.019 6.5E-07 50.1 1.3 18 1-18 96-113 (312)
311 4eun_A Thermoresistant glucoki 93.6 0.02 6.7E-07 46.1 1.3 18 1-18 35-52 (200)
312 3ec2_A DNA replication protein 93.6 0.023 8E-07 44.7 1.7 18 1-18 44-61 (180)
313 3gd7_A Fusion complex of cysti 93.6 0.02 7E-07 51.5 1.4 19 1-19 53-71 (390)
314 1p9r_A General secretion pathw 93.6 0.019 6.5E-07 52.2 1.2 18 1-18 173-190 (418)
315 3h4m_A Proteasome-activating n 93.6 0.2 6.7E-06 42.2 7.6 18 1-18 57-74 (285)
316 2ewv_A Twitching motility prot 93.6 0.019 6.6E-07 51.2 1.2 18 1-18 142-159 (372)
317 2bbw_A Adenylate kinase 4, AK4 93.5 0.027 9.4E-07 46.8 2.0 19 1-19 33-54 (246)
318 2f1r_A Molybdopterin-guanine d 93.5 0.0084 2.9E-07 47.6 -1.3 18 1-18 8-25 (171)
319 2oap_1 GSPE-2, type II secreti 93.4 0.021 7.1E-07 53.3 1.2 19 1-19 266-284 (511)
320 1oxx_K GLCV, glucose, ABC tran 93.4 0.014 4.8E-07 51.8 -0.0 19 1-19 37-55 (353)
321 3uie_A Adenylyl-sulfate kinase 93.3 0.023 8E-07 45.7 1.2 18 1-18 31-48 (200)
322 2ehv_A Hypothetical protein PH 93.3 0.029 1E-06 46.2 1.9 16 1-16 36-51 (251)
323 2hf9_A Probable hydrogenase ni 93.3 0.024 8.3E-07 46.1 1.3 18 1-18 44-61 (226)
324 3kta_A Chromosome segregation 93.3 0.026 8.7E-07 44.5 1.3 17 1-17 32-48 (182)
325 4b4t_L 26S protease subunit RP 93.2 0.35 1.2E-05 44.1 9.0 18 1-18 221-238 (437)
326 1lw7_A Transcriptional regulat 93.2 0.02 6.8E-07 50.8 0.7 19 1-19 176-194 (365)
327 2jeo_A Uridine-cytidine kinase 93.0 0.027 9.3E-07 46.9 1.2 18 1-18 31-48 (245)
328 1knq_A Gluconate kinase; ALFA/ 92.9 0.029 1E-06 43.8 1.2 17 1-17 14-30 (175)
329 3ozx_A RNAse L inhibitor; ATP 92.9 0.035 1.2E-06 52.0 2.0 19 1-19 31-49 (538)
330 1qhl_A Protein (cell division 92.8 0.018 6.1E-07 47.9 -0.3 19 1-19 33-51 (227)
331 1yqt_A RNAse L inhibitor; ATP- 92.7 0.04 1.4E-06 51.7 2.0 19 1-19 53-71 (538)
332 3b5x_A Lipid A export ATP-bind 92.6 0.043 1.5E-06 51.8 2.0 19 1-19 375-393 (582)
333 1cke_A CK, MSSA, protein (cyti 92.5 0.037 1.3E-06 45.1 1.3 18 1-18 11-28 (227)
334 4b4t_I 26S protease regulatory 92.5 0.6 2E-05 42.4 9.3 18 1-18 222-239 (437)
335 3j16_B RLI1P; ribosome recycli 92.5 0.044 1.5E-06 52.1 2.0 19 1-19 109-127 (608)
336 3b9p_A CG5977-PA, isoform A; A 92.4 0.66 2.2E-05 39.2 9.2 18 1-18 60-77 (297)
337 2v1u_A Cell division control p 92.4 0.33 1.1E-05 42.3 7.5 18 1-18 50-67 (387)
338 3kb2_A SPBC2 prophage-derived 92.4 0.047 1.6E-06 42.2 1.7 17 1-17 7-23 (173)
339 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.051 1.7E-06 41.8 1.9 16 1-16 29-44 (149)
340 3lw7_A Adenylate kinase relate 92.4 0.049 1.7E-06 41.9 1.8 15 1-15 7-21 (179)
341 1jjv_A Dephospho-COA kinase; P 92.4 0.05 1.7E-06 43.7 1.9 17 1-17 8-24 (206)
342 1qhx_A CPT, protein (chloramph 92.3 0.05 1.7E-06 42.5 1.8 18 1-18 9-26 (178)
343 2qz4_A Paraplegin; AAA+, SPG7, 92.3 0.5 1.7E-05 38.9 8.1 18 1-18 45-62 (262)
344 3b60_A Lipid A export ATP-bind 92.2 0.042 1.4E-06 52.0 1.4 19 1-19 375-393 (582)
345 1sq5_A Pantothenate kinase; P- 92.1 0.035 1.2E-06 48.1 0.8 18 1-18 86-103 (308)
346 1nij_A Hypothetical protein YJ 92.1 0.026 8.9E-07 49.2 -0.1 19 1-19 10-28 (318)
347 3euj_A Chromosome partition pr 92.1 0.042 1.4E-06 50.8 1.3 18 1-18 35-52 (483)
348 3bk7_A ABC transporter ATP-bin 92.1 0.053 1.8E-06 51.6 2.0 19 1-19 123-141 (607)
349 4e22_A Cytidylate kinase; P-lo 91.9 0.06 2.1E-06 45.1 2.0 16 1-16 33-48 (252)
350 4a82_A Cystic fibrosis transme 91.9 0.036 1.2E-06 52.4 0.5 19 1-19 373-391 (578)
351 3qf4_B Uncharacterized ABC tra 91.8 0.042 1.4E-06 52.2 0.9 19 1-19 387-405 (598)
352 1rz3_A Hypothetical protein rb 91.8 0.041 1.4E-06 44.3 0.8 17 1-17 28-44 (201)
353 2vp4_A Deoxynucleoside kinase; 91.8 0.042 1.4E-06 45.3 0.8 18 1-18 26-43 (230)
354 2qt1_A Nicotinamide riboside k 91.8 0.056 1.9E-06 43.5 1.5 18 1-18 27-44 (207)
355 3t61_A Gluconokinase; PSI-biol 91.7 0.05 1.7E-06 43.6 1.2 17 1-17 24-40 (202)
356 2yl4_A ATP-binding cassette SU 91.7 0.041 1.4E-06 52.2 0.7 19 1-19 376-394 (595)
357 3hr8_A Protein RECA; alpha and 91.7 0.68 2.3E-05 40.9 8.6 18 1-18 67-84 (356)
358 1ly1_A Polynucleotide kinase; 91.7 0.064 2.2E-06 41.7 1.8 17 1-17 8-24 (181)
359 3qf4_A ABC transporter, ATP-bi 91.7 0.045 1.6E-06 51.8 1.0 19 1-19 375-393 (587)
360 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.054 1.8E-06 43.9 1.2 17 1-17 29-45 (235)
361 3ozx_A RNAse L inhibitor; ATP 91.5 0.067 2.3E-06 50.1 2.0 19 1-19 300-318 (538)
362 1ixz_A ATP-dependent metallopr 91.4 0.058 2E-06 44.9 1.3 18 1-18 55-72 (254)
363 3tqc_A Pantothenate kinase; bi 91.4 0.057 2E-06 47.2 1.3 18 1-18 98-115 (321)
364 4b4t_K 26S protease regulatory 91.4 0.7 2.4E-05 41.9 8.5 18 1-18 212-229 (428)
365 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.048 1.6E-06 50.1 0.7 19 1-19 144-162 (460)
366 3vaa_A Shikimate kinase, SK; s 91.1 0.08 2.7E-06 42.4 1.8 17 1-17 31-47 (199)
367 2if2_A Dephospho-COA kinase; a 91.1 0.053 1.8E-06 43.4 0.8 17 1-17 7-23 (204)
368 3h2y_A GTPase family protein; 91.0 0.64 2.2E-05 41.2 7.7 42 75-124 69-110 (368)
369 2x8a_A Nuclear valosin-contain 90.9 0.066 2.3E-06 45.6 1.2 18 1-18 50-67 (274)
370 1xwi_A SKD1 protein; VPS4B, AA 90.8 2 6.9E-05 37.0 10.7 18 1-18 51-68 (322)
371 2yv5_A YJEQ protein; hydrolase 90.7 0.42 1.5E-05 41.1 6.2 45 74-123 78-123 (302)
372 4b4t_J 26S protease regulatory 90.4 1.3 4.6E-05 39.8 9.3 17 2-18 189-205 (405)
373 1yqt_A RNAse L inhibitor; ATP- 90.4 0.099 3.4E-06 49.0 2.0 19 1-19 318-336 (538)
374 3bk7_A ABC transporter ATP-bin 90.4 0.099 3.4E-06 49.7 2.0 19 1-19 388-406 (607)
375 2jaq_A Deoxyguanosine kinase; 90.3 0.1 3.5E-06 41.4 1.8 17 1-17 6-22 (205)
376 1odf_A YGR205W, hypothetical 3 90.3 0.083 2.8E-06 45.4 1.3 18 1-18 37-54 (290)
377 2cvh_A DNA repair and recombin 90.3 0.083 2.8E-06 42.5 1.2 17 1-17 26-42 (220)
378 1kht_A Adenylate kinase; phosp 90.3 0.12 4.1E-06 40.5 2.1 17 1-17 9-25 (192)
379 3trf_A Shikimate kinase, SK; a 90.3 0.1 3.6E-06 40.9 1.7 17 1-17 11-27 (185)
380 2obl_A ESCN; ATPase, hydrolase 90.2 0.071 2.4E-06 47.1 0.8 19 1-19 77-95 (347)
381 1iy2_A ATP-dependent metallopr 90.2 0.086 2.9E-06 44.6 1.3 18 1-18 79-96 (278)
382 3j16_B RLI1P; ribosome recycli 90.1 0.11 3.6E-06 49.5 1.9 20 1-20 384-403 (608)
383 3u61_B DNA polymerase accessor 90.1 2.2 7.5E-05 36.4 10.3 17 2-18 55-71 (324)
384 3cm0_A Adenylate kinase; ATP-b 90.1 0.11 3.8E-06 40.7 1.8 17 1-17 10-26 (186)
385 1in4_A RUVB, holliday junction 90.0 0.087 3E-06 46.0 1.2 18 1-18 57-74 (334)
386 1cr0_A DNA primase/helicase; R 90.0 0.074 2.5E-06 45.4 0.7 18 1-18 41-58 (296)
387 3qks_A DNA double-strand break 90.0 0.12 4E-06 41.9 1.9 16 1-16 29-44 (203)
388 4b4t_H 26S protease regulatory 90.0 1.9 6.4E-05 39.5 10.0 18 1-18 249-266 (467)
389 1xjc_A MOBB protein homolog; s 89.9 0.12 4.2E-06 40.8 1.9 18 1-18 10-27 (169)
390 1nks_A Adenylate kinase; therm 89.9 0.095 3.3E-06 41.1 1.3 17 1-17 7-23 (194)
391 2ze6_A Isopentenyl transferase 89.8 0.12 4.2E-06 43.3 1.9 17 1-17 7-23 (253)
392 2rhm_A Putative kinase; P-loop 89.7 0.099 3.4E-06 41.2 1.2 17 1-17 11-27 (193)
393 2pez_A Bifunctional 3'-phospho 89.7 0.12 4.3E-06 40.3 1.8 17 1-17 11-27 (179)
394 1n0w_A DNA repair protein RAD5 89.7 0.1 3.5E-06 42.7 1.3 18 1-18 30-47 (243)
395 2dpy_A FLII, flagellum-specifi 89.6 0.084 2.9E-06 48.2 0.8 19 1-19 163-181 (438)
396 1gvn_B Zeta; postsegregational 89.2 0.12 4E-06 44.3 1.3 17 1-17 39-55 (287)
397 3iij_A Coilin-interacting nucl 89.2 0.14 4.9E-06 40.0 1.7 16 1-16 17-32 (180)
398 1y63_A LMAJ004144AAA protein; 89.1 0.14 4.9E-06 40.4 1.7 18 1-18 16-33 (184)
399 1jbk_A CLPB protein; beta barr 89.1 0.17 6E-06 39.1 2.2 18 1-18 49-66 (195)
400 3vfd_A Spastin; ATPase, microt 89.1 1.1 3.8E-05 39.6 7.8 18 1-18 154-171 (389)
401 4b4t_M 26S protease regulatory 89.1 0.69 2.4E-05 42.1 6.4 17 2-18 222-238 (434)
402 1via_A Shikimate kinase; struc 89.0 0.15 5.2E-06 39.7 1.8 17 1-17 10-26 (175)
403 2iw3_A Elongation factor 3A; a 88.9 0.11 3.9E-06 52.0 1.2 19 1-19 705-723 (986)
404 2yvu_A Probable adenylyl-sulfa 88.9 0.15 5.3E-06 40.1 1.8 18 1-18 19-36 (186)
405 3ec1_A YQEH GTPase; atnos1, at 88.9 0.52 1.8E-05 41.8 5.4 42 75-124 71-112 (369)
406 4f4c_A Multidrug resistance pr 88.8 0.084 2.9E-06 54.7 0.2 18 1-18 1111-1128(1321)
407 2z0h_A DTMP kinase, thymidylat 88.8 0.18 6.2E-06 39.7 2.1 17 1-17 6-22 (197)
408 3g5u_A MCG1178, multidrug resi 88.7 0.13 4.6E-06 53.1 1.6 19 1-19 422-440 (1284)
409 4f4c_A Multidrug resistance pr 88.7 0.13 4.3E-06 53.4 1.4 19 1-19 450-468 (1321)
410 3fb4_A Adenylate kinase; psych 88.6 0.16 5.6E-06 40.9 1.7 16 1-16 6-21 (216)
411 1e6c_A Shikimate kinase; phosp 88.3 0.18 6.1E-06 38.9 1.7 17 1-17 8-24 (173)
412 2v54_A DTMP kinase, thymidylat 88.2 0.18 6.2E-06 40.0 1.8 18 1-18 10-27 (204)
413 1svm_A Large T antigen; AAA+ f 88.1 0.14 4.9E-06 45.7 1.2 18 1-18 175-192 (377)
414 3nwj_A ATSK2; P loop, shikimat 88.1 0.15 5E-06 42.9 1.2 17 1-17 54-70 (250)
415 1puj_A YLQF, conserved hypothe 88.1 1.2 4.2E-05 37.8 7.0 61 48-124 4-64 (282)
416 1tev_A UMP-CMP kinase; ploop, 88.1 0.19 6.5E-06 39.4 1.8 17 1-17 9-25 (196)
417 2plr_A DTMP kinase, probable t 88.0 0.22 7.4E-06 39.7 2.2 17 1-17 10-26 (213)
418 3qkt_A DNA double-strand break 88.0 0.19 6.4E-06 44.0 1.9 16 1-16 29-44 (339)
419 3dl0_A Adenylate kinase; phosp 87.9 0.19 6.6E-06 40.5 1.7 17 1-17 6-22 (216)
420 2iw3_A Elongation factor 3A; a 87.9 0.17 5.8E-06 50.7 1.6 19 1-19 467-485 (986)
421 3l82_B F-box only protein 4; T 87.8 1.3 4.4E-05 36.4 6.6 56 75-134 125-185 (227)
422 1t9h_A YLOQ, probable GTPase E 87.8 1.1 3.9E-05 38.6 6.7 47 74-124 85-131 (307)
423 1vht_A Dephospho-COA kinase; s 87.8 0.2 6.8E-06 40.5 1.8 17 1-17 10-26 (218)
424 2pbr_A DTMP kinase, thymidylat 87.8 0.23 7.8E-06 39.0 2.1 17 1-17 6-22 (195)
425 1lv7_A FTSH; alpha/beta domain 87.8 0.16 5.6E-06 42.2 1.3 18 1-18 51-68 (257)
426 3ux8_A Excinuclease ABC, A sub 87.5 0.13 4.3E-06 49.5 0.4 16 1-16 354-369 (670)
427 1gtv_A TMK, thymidylate kinase 87.4 0.075 2.6E-06 42.7 -1.0 18 1-18 6-23 (214)
428 2iyv_A Shikimate kinase, SK; t 87.4 0.22 7.4E-06 39.0 1.7 17 1-17 8-24 (184)
429 1uf9_A TT1252 protein; P-loop, 87.4 0.18 6.1E-06 40.0 1.3 18 1-18 14-31 (203)
430 2c95_A Adenylate kinase 1; tra 87.3 0.18 6.2E-06 39.7 1.3 17 1-17 15-31 (196)
431 2pt5_A Shikimate kinase, SK; a 87.3 0.26 8.7E-06 37.9 2.1 17 1-17 6-22 (168)
432 1e69_A Chromosome segregation 87.2 0.14 4.9E-06 44.4 0.6 16 1-16 30-45 (322)
433 4ag6_A VIRB4 ATPase, type IV s 86.9 0.23 7.9E-06 44.2 1.9 18 1-18 41-58 (392)
434 4aby_A DNA repair protein RECN 86.9 0.052 1.8E-06 48.7 -2.5 17 1-17 66-82 (415)
435 2wwf_A Thymidilate kinase, put 86.9 0.23 7.7E-06 39.7 1.6 17 1-17 16-32 (212)
436 1w1w_A Structural maintenance 86.8 0.19 6.5E-06 45.4 1.2 17 1-17 32-48 (430)
437 2bwj_A Adenylate kinase 5; pho 86.7 0.21 7E-06 39.5 1.3 17 1-17 18-34 (199)
438 2w58_A DNAI, primosome compone 86.7 0.29 1E-05 38.8 2.2 18 1-18 60-77 (202)
439 1nlf_A Regulatory protein REPA 86.6 0.17 5.7E-06 42.8 0.7 17 1-17 36-52 (279)
440 1m7g_A Adenylylsulfate kinase; 86.6 0.25 8.6E-06 39.8 1.7 18 1-18 31-48 (211)
441 1ukz_A Uridylate kinase; trans 86.6 0.26 8.8E-06 39.2 1.8 17 1-17 21-37 (203)
442 2cdn_A Adenylate kinase; phosp 86.6 0.26 8.8E-06 39.3 1.8 17 1-17 26-42 (201)
443 1qf9_A UMP/CMP kinase, protein 86.5 0.21 7.3E-06 39.0 1.2 17 1-17 12-28 (194)
444 3a4m_A L-seryl-tRNA(SEC) kinas 86.4 0.26 8.8E-06 41.3 1.8 17 1-17 10-26 (260)
445 1zd8_A GTP:AMP phosphotransfer 86.4 0.22 7.4E-06 40.6 1.3 17 1-17 13-29 (227)
446 1nn5_A Similar to deoxythymidy 86.4 0.21 7.3E-06 39.9 1.2 17 1-17 15-31 (215)
447 2o5v_A DNA replication and rep 86.3 0.22 7.4E-06 44.2 1.3 17 1-17 32-48 (359)
448 2qmh_A HPR kinase/phosphorylas 86.3 0.26 8.8E-06 40.1 1.6 19 1-19 40-58 (205)
449 1zak_A Adenylate kinase; ATP:A 86.2 0.22 7.6E-06 40.4 1.2 17 1-17 11-27 (222)
450 2vli_A Antibiotic resistance p 86.2 0.17 5.9E-06 39.4 0.5 17 1-17 11-27 (183)
451 2ius_A DNA translocase FTSK; n 86.2 0.27 9.1E-06 45.8 1.9 17 1-17 173-189 (512)
452 1aky_A Adenylate kinase; ATP:A 86.1 0.28 9.6E-06 39.7 1.8 17 1-17 10-26 (220)
453 3r20_A Cytidylate kinase; stru 86.1 0.28 9.6E-06 40.7 1.8 17 1-17 15-31 (233)
454 3thx_A DNA mismatch repair pro 86.0 5.5 0.00019 39.7 11.3 15 1-15 668-682 (934)
455 2grj_A Dephospho-COA kinase; T 86.0 0.28 9.7E-06 39.3 1.7 17 1-17 18-34 (192)
456 1zuh_A Shikimate kinase; alpha 86.0 0.29 9.9E-06 37.7 1.7 17 1-17 13-29 (168)
457 3bos_A Putative DNA replicatio 85.9 0.34 1.2E-05 39.1 2.2 18 1-18 58-75 (242)
458 2p5t_B PEZT; postsegregational 85.8 0.17 5.7E-06 42.3 0.3 18 1-18 38-55 (253)
459 2xb4_A Adenylate kinase; ATP-b 85.7 0.3 1E-05 39.8 1.8 17 1-17 6-22 (223)
460 1sxj_E Activator 1 40 kDa subu 85.7 0.2 6.8E-06 43.6 0.7 17 1-17 42-58 (354)
461 2p65_A Hypothetical protein PF 85.6 0.25 8.6E-06 38.1 1.2 18 1-18 49-66 (187)
462 1ko7_A HPR kinase/phosphatase; 85.6 0.23 7.8E-06 43.3 1.0 19 1-19 150-168 (314)
463 3g5u_A MCG1178, multidrug resi 85.5 0.28 9.6E-06 50.7 1.9 19 1-19 1065-1083(1284)
464 3cr8_A Sulfate adenylyltranfer 85.4 0.14 4.6E-06 48.2 -0.6 18 1-18 375-392 (552)
465 3auy_A DNA double-strand break 85.3 0.26 8.8E-06 43.7 1.3 16 1-16 31-46 (371)
466 1e4v_A Adenylate kinase; trans 85.1 0.27 9.3E-06 39.6 1.2 17 1-17 6-22 (214)
467 1jr3_A DNA polymerase III subu 84.9 0.5 1.7E-05 41.1 3.0 17 1-17 44-60 (373)
468 3ake_A Cytidylate kinase; CMP 84.8 0.4 1.4E-05 38.0 2.1 17 1-17 8-24 (208)
469 1ltq_A Polynucleotide kinase; 84.8 0.35 1.2E-05 41.1 1.8 17 1-17 8-24 (301)
470 3tlx_A Adenylate kinase 2; str 84.5 0.37 1.3E-05 39.9 1.9 17 1-17 35-51 (243)
471 3a8t_A Adenylate isopentenyltr 84.5 0.39 1.3E-05 42.2 2.1 51 1-53 46-105 (339)
472 2chg_A Replication factor C sm 84.4 0.44 1.5E-05 37.7 2.2 18 1-18 44-61 (226)
473 1njg_A DNA polymerase III subu 84.3 0.44 1.5E-05 38.1 2.1 18 1-18 51-68 (250)
474 1pzn_A RAD51, DNA repair and r 84.0 0.26 9E-06 43.4 0.7 19 1-19 137-155 (349)
475 1qvr_A CLPB protein; coiled co 83.9 1.1 3.9E-05 44.1 5.3 18 1-18 197-214 (854)
476 3n70_A Transport activator; si 83.7 0.48 1.7E-05 35.7 2.0 18 1-18 30-47 (145)
477 3exa_A TRNA delta(2)-isopenten 83.7 0.42 1.4E-05 41.7 1.8 53 1-55 9-70 (322)
478 1ak2_A Adenylate kinase isoenz 83.7 0.42 1.4E-05 39.1 1.8 17 1-17 22-38 (233)
479 4eaq_A DTMP kinase, thymidylat 83.7 0.48 1.6E-05 39.0 2.1 18 1-18 32-49 (229)
480 2r62_A Cell division protease 83.6 0.46 1.6E-05 39.5 2.1 18 1-18 50-67 (268)
481 1uj2_A Uridine-cytidine kinase 83.3 0.5 1.7E-05 39.2 2.1 17 1-17 28-44 (252)
482 3crm_A TRNA delta(2)-isopenten 83.2 0.45 1.5E-05 41.6 1.8 18 1-18 11-28 (323)
483 2dr3_A UPF0273 protein PH0284; 83.1 0.38 1.3E-05 39.2 1.3 16 1-16 29-44 (247)
484 3bfv_A CAPA1, CAPB2, membrane 83.1 3.1 0.00011 34.9 7.1 63 44-122 193-256 (271)
485 3d3q_A TRNA delta(2)-isopenten 83.0 0.45 1.6E-05 41.8 1.8 18 1-18 13-30 (340)
486 3be4_A Adenylate kinase; malar 83.0 0.39 1.3E-05 38.9 1.3 17 1-17 11-27 (217)
487 1tf7_A KAIC; homohexamer, hexa 82.9 0.31 1E-05 45.3 0.7 15 1-15 45-59 (525)
488 3foz_A TRNA delta(2)-isopenten 82.8 0.48 1.6E-05 41.2 1.8 18 1-18 16-33 (316)
489 1l8q_A Chromosomal replication 82.5 0.44 1.5E-05 41.0 1.5 18 1-18 43-60 (324)
490 1sxj_C Activator 1 40 kDa subu 82.2 0.46 1.6E-05 41.3 1.5 18 1-18 52-69 (340)
491 2f6r_A COA synthase, bifunctio 82.0 0.43 1.5E-05 40.5 1.3 16 1-16 81-96 (281)
492 2qby_A CDC6 homolog 1, cell di 81.9 0.41 1.4E-05 41.6 1.1 18 1-18 51-68 (386)
493 3cf0_A Transitional endoplasmi 81.5 0.51 1.7E-05 40.4 1.5 18 1-18 55-72 (301)
494 1tue_A Replication protein E1; 81.2 0.49 1.7E-05 38.7 1.2 17 1-17 64-80 (212)
495 1q3t_A Cytidylate kinase; nucl 81.1 0.58 2E-05 38.3 1.7 17 1-17 22-38 (236)
496 4fcw_A Chaperone protein CLPB; 81.0 0.47 1.6E-05 40.2 1.2 18 1-18 53-70 (311)
497 2qgz_A Helicase loader, putati 81.0 0.68 2.3E-05 39.9 2.2 18 1-18 158-175 (308)
498 3t15_A Ribulose bisphosphate c 80.6 0.6 2.1E-05 39.8 1.7 17 2-18 43-59 (293)
499 3zvl_A Bifunctional polynucleo 80.6 0.6 2.1E-05 42.0 1.8 18 1-18 264-281 (416)
500 2iut_A DNA translocase FTSK; n 80.4 0.71 2.4E-05 43.4 2.2 18 1-18 220-237 (574)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=100.00 E-value=2.5e-33 Score=242.65 Aligned_cols=215 Identities=64% Similarity=1.016 Sum_probs=184.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|+|...+.++...++|.........+++..+.+|||||+.+.....+.+.+.+.+++...++|++|
T Consensus 42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il 121 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL 121 (262)
T ss_dssp EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEE
Confidence 59999999999999999987777777888888888888899999999999999888777788888888888778999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF 160 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 160 (265)
||+++|..+++..+..+++.+.+.++...++|+++|+||+|+.++++..++++++...+.++++++++.+......+...
T Consensus 122 ~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 201 (262)
T 3def_A 122 YVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA 201 (262)
T ss_dssp EEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHhhhHHHHHHHHHHhCcccccccccc
Confidence 99999987788888999999999999888889999999999987788899999988778889998877654433223345
Q ss_pred chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceeccccccc
Q 024586 161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215 (265)
Q Consensus 161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~ 215 (265)
+|+.+++|.+.|..|..++++||++.+|++.|++++.+.+.++++++++++++.+
T Consensus 202 ~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (262)
T 3def_A 202 IAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256 (262)
T ss_dssp CEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSCCEEC------
T ss_pred CCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhCCCCceeccHHHhh
Confidence 7999999999999999999999999999999999999999999999999988654
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=100.00 E-value=4.4e-33 Score=242.05 Aligned_cols=221 Identities=68% Similarity=1.079 Sum_probs=192.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|+|.....++...++|..+........+..+.||||||+.+.....+...+.+.+++...++|++|
T Consensus 45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il 124 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 124 (270)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEE
Confidence 59999999999999999987677777778888887788888999999999999887766677777777777667899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF 160 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 160 (265)
||++++..+++..+..+++.+.+.+|.+.+.|+++|+||+|+.++++.++++|.++..+.+++.+++..++... .+...
T Consensus 125 ~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 203 (270)
T 1h65_A 125 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASD 203 (270)
T ss_dssp EEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcc
Confidence 99999876788888899999999999888899999999999987777899999988888888888776555332 22446
Q ss_pred chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecccccccCCCCCCC
Q 024586 161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEK 222 (265)
Q Consensus 161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (265)
+|++++++.+.|+++..+++++|....|.+.|++.+.+.+.++++.+++++++++++++..+
T Consensus 204 ~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~~~~~~ 265 (270)
T 1h65_A 204 IPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAADH 265 (270)
T ss_dssp CCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHHHHCC-
T ss_pred CCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCCCcccc
Confidence 89999999999999999999999999999999999999999999999999999998877654
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=170.90 Aligned_cols=144 Identities=26% Similarity=0.289 Sum_probs=101.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC--CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ--SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~--~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~ 76 (265)
+|.+|||||||+|+|+|..... +..+ ++|..+......+++..+.||||||+.+.....++..+.+.+++ ..+++
T Consensus 35 vG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGP 113 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCC
T ss_pred ECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999988633 3322 56777888888899999999999999987766666666666654 34689
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST 149 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 149 (265)
|++|+|++++ +++..+..+++.+.+.++...++|+++|+||+|+. +...+++++....+.++++++.|+
T Consensus 114 ~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 114 HALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp SEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHHS
T ss_pred cEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHcC
Confidence 9999997765 67778889999999888876678999999999984 345677777766677888887765
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=2.9e-21 Score=165.51 Aligned_cols=144 Identities=24% Similarity=0.286 Sum_probs=108.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHH--hcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF-QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFL--LNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~-~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l--~~~~~ 76 (265)
||.+|||||||+|+|+|...+..+.. .++|..+......+++..+.||||||+.+..... ++....+.+++ ..+++
T Consensus 27 vG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGP 106 (247)
T ss_dssp ESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCC
T ss_pred ECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999987554432 3477888888888999999999999998765433 33444555543 44799
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcC-CcEEEEEeCccCCCCCCCCHHHHHhhc-hHHHHHHHhccc
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW-KRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVSPST 149 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~-~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~ 149 (265)
|++|+|++++ +++..+..+++.+.+.||.+.+ .++++|.||.|+. +.+.++++... .+.++++++.|+
T Consensus 107 d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~---~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 107 HALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA---GGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp SEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred CEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC---CCCHHHHHhhcccHHHHHHHHHcC
Confidence 9999997765 6889999999999999987654 5678888888983 35688888654 367888888775
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=7.7e-18 Score=144.68 Aligned_cols=181 Identities=19% Similarity=0.213 Sum_probs=125.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-CCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~-~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d 77 (265)
+|.+|||||||+|+|+|...+..+..+. +|..+......+.+..+.||||||+.+.....+.+.+.+.+++ ..+++|
T Consensus 28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d 107 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH 107 (260)
T ss_dssp EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 6999999999999999988655554333 6777777788889999999999999877655555554554443 236899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEe-CccCCCCCCCCHHHHHhhc-hHHHHHHHhcccc-cccc
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT-HAQLSLPDRLDYEVFCSKR-SEALLKFVSPSTW-MKKK 154 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~-~~~~ 154 (265)
++|+|++++ +++..+..+++.+.+.++.....|.++|+| |+|+. +....+++... .+.+++++..+.. +...
T Consensus 108 ~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 182 (260)
T 2xtp_A 108 VLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN---GGSLMDYMHDSDNKALSKLVAACGGRICAF 182 (260)
T ss_dssp EEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHHHTTTCEEEC
T ss_pred EEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC---CccHHHHHHhcchHHHHHHHHHhCCeEEEe
Confidence 999997776 578888889999999988766688898888 99985 23466665432 2445666655532 1100
Q ss_pred ccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCccee
Q 024586 155 DIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALL 208 (265)
Q Consensus 155 ~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~ 208 (265)
..+|+....+. -+..|++.+.+.+......++
T Consensus 183 ----~~~~~SA~~~~------------------gv~~l~~~i~~~~~~~~~~~~ 214 (260)
T 2xtp_A 183 ----NNRAEGSNQDD------------------QVKELMDCIEDLLMEKNGDHY 214 (260)
T ss_dssp ----CTTCCHHHHHH------------------HHHHHHHHHHHHHHHTTTCCC
T ss_pred ----cCcccccccHH------------------HHHHHHHHHHHHHHhCCCCcC
Confidence 01233211111 088899998888876543344
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.71 E-value=9.4e-17 Score=134.04 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=86.1
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh-cC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL-NK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~-~~ 74 (265)
+|.+|+|||||+|+|++.. .+.++..+++|......... .++..+.+|||||+.+..... +.+...+..++. ..
T Consensus 35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRP 114 (223)
T ss_dssp EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCT
T ss_pred EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCc
Confidence 5999999999999999987 45666666777766555554 567889999999987654332 223334444443 35
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+|++++|++... .++..+..+++.+.+. ..|+++|+||+|+.
T Consensus 115 ~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 115 QLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKL 157 (223)
T ss_dssp TEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGS
T ss_pred CcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccC
Confidence 6899999977654 4777888888777663 28999999999985
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.70 E-value=3.6e-16 Score=137.98 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=87.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCC---cHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~---~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||+|+|+|.+...++..+++|..........+ +.++.+|||||+.+.... .+........++ ..+
T Consensus 16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~a 93 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEA 93 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHC
T ss_pred ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcC
Confidence 59999999999999999998777888888888887777888 999999999999875411 122223333333 378
Q ss_pred cEEEEEEecCCcCCCHHHHHH-HHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~-l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|++++|++.+. ..+..+... ++.+... ..|+++|+||+|+.
T Consensus 94 D~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 94 DVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp SEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred CEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 99999977764 356666665 6666552 28999999999985
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.68 E-value=7e-16 Score=135.77 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|...+.++..+++|..........++.++.+|||||+.++...-.+ .......++ ..+|++
T Consensus 13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~i 90 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAV 90 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEE
Confidence 69999999999999999988777777777777666666678899999999999865432111 222222222 589999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|+|++.+. +++..+..+++.+.+..+ ..|+++|+||+|+.
T Consensus 91 l~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 91 VWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAA 130 (301)
T ss_dssp EEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGC
T ss_pred EEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccC
Confidence 99987764 467777777777766532 28999999999985
No 9
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.64 E-value=2.9e-15 Score=118.04 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++......+..+++|..........++..+.+|||||..+..............++ ..+|+++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i 84 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVL 84 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEE
Confidence 59999999999999999875445555666667777777888999999999998764433333333333332 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++... .++..+..+.+.+.+. ..|+++|+||+|+.
T Consensus 85 ~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 85 FAVDGRA-ELTQADYEVAEYLRRK-----GKPVILVATKVDDP 121 (161)
T ss_dssp EEEESSS-CCCHHHHHHHHHHHHH-----TCCEEEEEECCCSG
T ss_pred EEEECCC-cccHhHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 9987764 3666666666666653 28999999999985
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=1.4e-15 Score=131.94 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=73.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-------CCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH----
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI---- 67 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~-------~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i---- 67 (265)
+|.+|+|||||+|+|++...+.... .+..+..........+|. .++||||||+++.....+.+...+
T Consensus 14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~ 93 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID 93 (274)
T ss_dssp EECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHH
Confidence 6999999999999999988654432 122223333344445554 889999999976532221111111
Q ss_pred ---HHHHh-----------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 ---KRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ---~~~l~-----------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..++. ..++|++||++......+...+..+++.+.. ..|+++|+||+|+.
T Consensus 94 ~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 94 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 22221 2357899999654444588888888888776 28999999999984
No 11
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=6.7e-15 Score=119.94 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh-cCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL-NKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~-~~~ 75 (265)
+|.+|+|||||+|+|++.. ....+...++|....... .+ ..+.+|||||+.+..... +.+...+..++. ...
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE 105 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhc
Confidence 5999999999999999986 333444444454443332 23 368999999987654432 222233333432 246
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++++|++.+. ..+..+..+++.+... ..|+++|+||+|+.+
T Consensus 106 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 106 LKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKIP 148 (195)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 699999987664 4666666667766652 279999999999953
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.63 E-value=2e-15 Score=121.61 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|.+.....++..+++|.........+++..+.+|||||+.+.....+. .......+ ...+|++
T Consensus 10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~ad~~ 87 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE--IEQADRV 87 (172)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--HHTCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH--HHhCCEE
Confidence 69999999999999999875556666677777777777888999999999999653221111 11111111 1488999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+... +..+..++..+.+..... .|+++|+||+|+.
T Consensus 88 i~v~D~~~~~-s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 88 LFMVDGTTTD-AVDPAEIWPEFIARLPAK--LPITVVRNKADIT 128 (172)
T ss_dssp EEEEETTTCC-CCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred EEEEECCCCC-CHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence 9998876532 223556777776654333 7999999999984
No 13
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.63 E-value=9e-15 Score=122.92 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~--~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.... ++..+.+|...........+..+.+|||||+.+....... ....+..+ ...+|+
T Consensus 35 vG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~ 111 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGV 111 (228)
T ss_dssp ECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccE
Confidence 699999999999999998753 4555556666666666778889999999999764322211 11222222 247799
Q ss_pred EEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++... +. ..+..++..+...+. ..|+++|+||+|+.....
T Consensus 112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 112 ILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp EEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--C
T ss_pred EEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCchh
Confidence 99998876532 43 233456666655422 289999999999964333
No 14
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=8.3e-16 Score=142.64 Aligned_cols=126 Identities=25% Similarity=0.249 Sum_probs=87.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.+.+.++..+++|..........++..+.+|||||+.+..... .+....+........+|+
T Consensus 201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 280 (456)
T 4dcu_A 201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV 280 (456)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSE
T ss_pred ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCE
Confidence 599999999999999998877788888888887777788899999999999986543211 111112221111136799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV 132 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~ 132 (265)
+|+|++... .++..+..++..+.+.. +++++|+||+|+.+.+..+.++
T Consensus 281 ~llviD~~~-~~~~~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~~~~~~~~ 328 (456)
T 4dcu_A 281 VAVVLDGEE-GIIEQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMKE 328 (456)
T ss_dssp EEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCSSHHHH
T ss_pred EEEEEeCCC-CcCHHHHHHHHHHHHcC-----CCEEEEEEChhcCCCchHHHHH
Confidence 999976654 47888888888887632 8999999999997545444443
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.62 E-value=1.7e-14 Score=117.06 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHH-hcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFL-LNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l-~~~~~ 76 (265)
+|.+|+|||||+|+|++......++..++|....... .+..+.+|||||+....... +.+......++ ....+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSL 105 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTE
T ss_pred ECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCc
Confidence 5999999999999999988555555555554443322 23468899999986543322 12222333333 23577
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|++++|++.+. .....+..+++.+.... .|+++|+||+|+.
T Consensus 106 ~~vi~v~d~~~-~~~~~~~~~~~~~~~~~-----~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 106 QMVFLLVDGRI-PPQDSDLMMVEWMKSLN-----IPFTIVLTKMDKV 146 (195)
T ss_dssp EEEEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGS
T ss_pred eEEEEEecCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEEChhcC
Confidence 99999977653 45666677777776652 8999999999985
No 16
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=7.9e-16 Score=142.01 Aligned_cols=125 Identities=25% Similarity=0.254 Sum_probs=82.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|+|.....++..+++|.........++|..+.+|||||+.+.....+ +....++.......+|+
T Consensus 181 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 260 (436)
T 2hjg_A 181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV 260 (436)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSE
T ss_pred EcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCE
Confidence 6999999999999999998766787788888777777888999999999999865432110 11112211111136799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 131 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~ 131 (265)
+++|++++. ..+..+..++..+.+.. +++++|+||+|+.+.+..+.+
T Consensus 261 ~llv~D~~~-~~s~~~~~~~~~~~~~~-----~~iiiv~NK~Dl~~~~~~~~~ 307 (436)
T 2hjg_A 261 VAVVLDGEE-GIIEQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMK 307 (436)
T ss_dssp EEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCTTHHH
T ss_pred EEEEEcCCc-CCcHHHHHHHHHHHHcC-----CcEEEEEECccCCCcchHHHH
Confidence 999977764 46777777777766532 899999999999654443333
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=6.5e-15 Score=136.01 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=76.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~--~~~~~~~~~i~~~l~~~~~d~ 78 (265)
||.+|||||||+|+|+|...+.+++.+++|.........++|..+.+|||||+.... ...+.+......++ .++|+
T Consensus 7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~~ad~ 84 (439)
T 1mky_A 7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READL 84 (439)
T ss_dssp ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--HhCCE
Confidence 699999999999999999876778888888888888888999999999999986431 12233333333232 58999
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++... .++..+..+.+.+.+.. +|+++|+||+|+.
T Consensus 85 il~V~D~~~-~~~~~d~~i~~~l~~~~-----~p~ilv~NK~D~~ 123 (439)
T 1mky_A 85 VLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL 123 (439)
T ss_dssp EEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence 999977653 47777777777776542 8999999999973
No 18
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.58 E-value=5.7e-15 Score=127.01 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=82.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|+|... .++..+++|.........+++..+.+|||||+.+..... .......+.++....+|
T Consensus 7 vG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d 85 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYD 85 (256)
T ss_dssp EESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCS
T ss_pred ECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCC
Confidence 59999999999999999874 677788888888888888899999999999997654310 11111234455556899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|++.+. ......+...+.+. ..|+++|+||+|+..
T Consensus 86 ~vi~VvDas~---~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 86 CIINVIDACH---LERHLYLTSQLFEL-----GKPVVVALNMMDIAE 124 (256)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHTTS-----CSCEEEEEECHHHHH
T ss_pred EEEEEeeCCC---chhHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 9999966553 12333444444433 389999999999853
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.8e-14 Score=115.64 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.........+..+..........++. .+.+|||||..+.. .....++ ..+|+
T Consensus 16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~--~~~d~ 86 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYY--RDAHA 86 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG--GGCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHc--cCCCE
Confidence 5999999999999999887432222222333333334455664 78999999964321 1112222 36899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+++|++++.......-..++..+...... ..|+++|+||+|+......
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~ 134 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVV 134 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCccccc
Confidence 99998876532112224556666665433 3799999999999654433
No 20
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.57 E-value=1.9e-14 Score=115.29 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++... .....+..|.........+++..+.+|||||..+...... . ....+|+++
T Consensus 14 ~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~~~~~d~~i 83 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--GAQVTDIVI 83 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--SCCCCCEEE
T ss_pred ECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--HHhhCCEEE
Confidence 59999999999999999874 3333334444444456677889999999999865432221 1 124789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++. .........++.+.. . ..|+++|+||+|+.
T Consensus 84 ~v~d~~~-~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 84 LVVAADD-GVMPQTVEAINHAKA---A--NVPIIVAINKMDKP 120 (178)
T ss_dssp EEEETTC-CCCHHHHHHHHHHGG---G--SCCEEEEEETTTSS
T ss_pred EEEECCC-CCcHHHHHHHHHHHh---C--CCCEEEEEECccCC
Confidence 9987764 234455555544432 2 27899999999995
No 21
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.57 E-value=1.3e-14 Score=125.97 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=83.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHH-HHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAI-QLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~-~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|+|.. +.++..+++|...........+..+.+|||||+.+...... ... ...+.++....+|
T Consensus 9 vG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d 87 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (274)
T ss_dssp EECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS
T ss_pred ECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC
Confidence 5999999999999999998 47778888888888788888889999999999987542110 111 1223344456899
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++++|++... . .....+...+.+.. .|+++|+||+|+.
T Consensus 88 ~ii~VvD~~~--~-~~~~~~~~~l~~~~-----~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 88 LLINVVDASN--L-ERNLYLTLQLLELG-----IPCIVALNMLDIA 125 (274)
T ss_dssp EEEEEEEGGG--H-HHHHHHHHHHHHHT-----CCEEEEEECHHHH
T ss_pred EEEEEecCCC--h-HHHHHHHHHHHhcC-----CCEEEEEECccch
Confidence 9999966553 2 33445555665542 8999999999984
No 22
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.56 E-value=4.6e-14 Score=111.68 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+..+..........++ ..+.+|||||..+....... ++ ..+|+
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~ 80 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA-------YY--RGAQA 80 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH-------HH--TTCCE
T ss_pred ECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHH-------Hh--cCCCE
Confidence 599999999999999987632 11122222334444455555 47899999997544332221 11 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++..........+++.+..... ..|+++|+||+|+.+...
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~ 126 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSC 126 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccc
Confidence 9999887753211222345555555442 279999999999864333
No 23
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=3e-14 Score=131.54 Aligned_cols=112 Identities=24% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC---------cHHHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---------NYHAIQLIKRFL 71 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~---------~~~~~~~i~~~l 71 (265)
+|.+|||||||+|+|+|.....+++.+++|..+......++|..+.+|||||+...... .......+.
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~--- 262 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE--- 262 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHH---
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHh---
Confidence 69999999999999999987678888888888777788899999999999998432211 111222333
Q ss_pred hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 72 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 72 ~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
.+|++++|++... ..+..+..+.+.+.... +++++|+||+|+..
T Consensus 263 ---~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~-----~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 263 ---KADVVVIVLDATQ-GITRQDQRMAGLMERRG-----RASVVVFNKWDLVV 306 (439)
T ss_dssp ---HCSEEEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGST
T ss_pred ---hCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECccCCC
Confidence 5799999976653 35666666666555432 89999999999864
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.56 E-value=1.6e-14 Score=114.54 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|++..... ...++ +.........+.+ ..+.+|||||..+..... ..++ ..+|
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~--~~~~ 80 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDSFDP--NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA-------PMYY--RGSA 80 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT-------HHHH--TTCS
T ss_pred ECcCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc-------HhhC--cCCC
Confidence 5999999999999999886321 11111 1112222334444 578999999984322111 1111 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
++++|++++..........+++.+.....+. .++++|+||+|+...
T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 81 AAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc
Confidence 9999988775322223345666666653333 789999999999643
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.56 E-value=3.5e-14 Score=112.57 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+..+.........+++ ..+.+|||||..+....... .+ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~------~~~d~ 78 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA---YY------RGAMG 78 (170)
T ss_dssp EESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHH---HH------TTEEE
T ss_pred ECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHH---Hh------ccCCE
Confidence 59999999999999998764 222222233333344555555 46899999997544332221 11 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++..........++..+....... .|+++|+||+|+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 121 (170)
T 1g16_A 79 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence 999988765321122345666666655333 7999999999993
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.55 E-value=9.7e-14 Score=110.94 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|++.... ....++ +..........++ ..+.+|||||..+.. ......+ ..+|
T Consensus 21 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~------~~~d 89 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---AVTRSYY------RGAA 89 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---HHHHHHH------HTCS
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---hhHHHHh------ccCC
Confidence 599999999999999987642 222222 2222233344444 478999999964322 1222222 2789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
++++|++++..........++..+......+ .|+++|+||+|+.....
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~ 137 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRD 137 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCC
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccc
Confidence 9999988775322222345666666654333 78999999999954333
No 27
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=3.1e-14 Score=113.01 Aligned_cols=116 Identities=20% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....++...........++ ..+.+|||||..+.. . ....++ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~----~~~~~~--~~~~~ 77 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---A----MQRLSI--SKGHA 77 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---H----HHHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---H----HHHHhc--ccCCE
Confidence 599999999999999987632 1122222222222333343 468999999975421 1 112222 25799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++..........++..+.+..+.....|+++|+||+|+.+.+.
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE 126 (172)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc
Confidence 9999887753222223455666666543222379999999999854333
No 28
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.55 E-value=4.7e-14 Score=112.45 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.|... .++..+++|.........+++..+.+|||||+.+...... .......++...++|+++
T Consensus 9 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~i 86 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIINEKPDLVV 86 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHHHCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhcCCCCEEE
Confidence 69999999999999999764 4455555566655666677889999999999876432221 111122233324789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++... + .....++..+.+. ..|+++|+||+|+.
T Consensus 87 ~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 87 NIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp EEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred EEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 9976653 2 2233455555442 27999999999984
No 29
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.55 E-value=2.6e-14 Score=113.46 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+..+.........+++. .+.+|||||..+... ....+ ...+|+
T Consensus 12 ~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~--~~~~d~ 81 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIY--YRDSNG 81 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS--STTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHH--hccCCE
Confidence 599999999999999987632 222222233333334455554 678999999643211 11111 147899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|++++..........+++.+....+.. .|+++|+||+|+.+....+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~ 130 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVS 130 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccC
Confidence 999988765321122345666666654433 7899999999996433333
No 30
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2e-14 Score=117.41 Aligned_cols=113 Identities=18% Similarity=0.086 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-ccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|++..... ..+..+.+...........+..+.+|||||..+..... ..++ ..+|++
T Consensus 29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~i 99 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA-------PMYY--RGSAAA 99 (192)
T ss_dssp EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT-------HHHH--TTCSEE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh-------HHhh--ccCCEE
Confidence 5999999999999999876321 11111111111112222245678999999964322111 1122 378999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++++..........++..+.+..... .|+++|+||+|+.+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSD 142 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 99988765322223345666666654333 79999999999953
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=114.66 Aligned_cols=113 Identities=18% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+..+.........+++ ..+.+|||||..+....... + ...+|+
T Consensus 15 ~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~~~~d~ 84 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST-------Y--YRGTHG 84 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGG-------G--GTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHH-------H--hccCCE
Confidence 699999999999999998742 22233334444445566677 57899999996543322221 1 147899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
+++|++++.......-..++..+.+... ..|+++|+||+|+.+.+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERK 129 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhc
Confidence 9999887753222222345666655443 27999999999985433
No 32
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.54 E-value=9.6e-14 Score=113.05 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC-------------------------------------
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG------------------------------------- 42 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g------------------------------------- 42 (265)
+|.+|+|||||+|+|++.... ....++ +.........+++
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDTFH--ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENL 90 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC--SSCCCCCSCEEEEEEEETTC-------------------------------CCCTTT
T ss_pred ECCCCCCHHHHHHHHHhCcCC--CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCcc
Confidence 599999999999999998642 222222 2222223333333
Q ss_pred --eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 43 --FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 43 --~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
..+.+|||||..+.... ...++ ..+|++++|++++..........++..+....+ .|+++|+||+
T Consensus 91 ~~~~~~i~Dt~G~~~~~~~-------~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~ 157 (208)
T 3clv_A 91 CNIKFDIWDTAGQERYASI-------VPLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKI 157 (208)
T ss_dssp CEEEEEEEECTTGGGCTTT-------HHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECT
T ss_pred ceeEEEEEECCCcHHHHHH-------HHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECC
Confidence 67899999996443221 12222 378999999877642211222345555655433 8999999999
Q ss_pred cC
Q 024586 121 QL 122 (265)
Q Consensus 121 D~ 122 (265)
|.
T Consensus 158 D~ 159 (208)
T 3clv_A 158 DK 159 (208)
T ss_dssp TC
T ss_pred Cc
Confidence 93
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=114.90 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=76.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+..+..........++ ..+.+|||||..+..... ..++ ..+|+
T Consensus 22 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ 91 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYY--RGAHG 91 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH-------HHHH--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH-------HHHH--hhCCE
Confidence 59999999999999998764 222223334444445566666 468999999964332211 1222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|++++..........++..+....... .|+++|+||+|+.+.+...
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~ 140 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVD 140 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccC
Confidence 999988775322223345666676665433 7999999999996544433
No 34
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.54 E-value=8.1e-14 Score=119.91 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=81.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|+|... .++..+++|...........+..+.+|||||..+......+ ....+.++....+|+++
T Consensus 11 vG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~~d~ii 88 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLKGDADLVI 88 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHHSCCSEEE
T ss_pred ECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhhcCCCEEE
Confidence 59999999999999999875 46777778887777777788899999999999765433211 11223444446899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.+. + .....++..+.+. ..|+++|+||+|+.
T Consensus 89 ~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 89 LVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEA 123 (258)
T ss_dssp EEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred EEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCC
Confidence 9976653 3 2333455555443 28999999999984
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.54 E-value=1.7e-13 Score=110.60 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....+++..........++.. +.+|||||..+....... .+. .+|+
T Consensus 10 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~~------~~~~ 78 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ---YMR------TGEG 78 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHH---HHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHH---HHh------cCCE
Confidence 69999999999999998763 3334445555555555666665 678999997654332221 122 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|+++++.........++..+...... ...|+++|+||+|+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 79 FLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence 99998887532112334455555554321 237999999999995
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.54 E-value=1.4e-13 Score=110.81 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+.. . ....++ ..+|+
T Consensus 24 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~--~~~d~ 92 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----A---IRDNYF--RSGEG 92 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----H---HHHHHh--ccCCE
Confidence 59999999999999998763 333344444444444556664 68999999975321 1 112222 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++..........++..+...... ...|+++|+||+|+.+...
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~ 140 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQ 140 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCc
Confidence 99998877532112334555566555431 1279999999999854333
No 37
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.53 E-value=4.9e-14 Score=117.11 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc-cEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~-~~~~~~~~-~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|.+|||||||+|+|++.... .....+... ........ ++ ..+.+|||||..........+ + ..+
T Consensus 17 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~------~~~ 85 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGRFE--KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY---Y------IGA 85 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCSTT--CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH---H------TTC
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH---h------hcC
Confidence 699999999999999987632 111112111 11111111 22 678999999976544333221 1 378
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
|++++|++++..........++..+....+.+ .|+++|+||+|+..
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 131 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKN 131 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC-
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 99999988775332223345667777665544 79999999999853
No 38
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.53 E-value=1.3e-14 Score=133.10 Aligned_cols=115 Identities=22% Similarity=0.322 Sum_probs=77.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|++.+...++...++|.........+.+. ++.+|||||+.+.........+....++ ..+|++
T Consensus 40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~v 117 (423)
T 3qq5_A 40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCG 117 (423)
T ss_dssp ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEE
Confidence 5999999999999999998766677777888877777777765 8999999999876543322222222222 478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
|+|+ |. .....+..+++.+.+.. .|+++|+||+|+...
T Consensus 118 llVv--D~-~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 118 ILVT--DS-APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGE 155 (423)
T ss_dssp EEEC--SS-SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTC
T ss_pred EEEE--eC-CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCc
Confidence 9995 44 56677888888888762 899999999999643
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.52 E-value=1.8e-13 Score=110.30 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++.. +.+|||||..+....... .++ .+|+
T Consensus 24 ~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~~------~~d~ 92 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQ---YMR------TGDG 92 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHH---HHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHH---HHh------cCCE
Confidence 69999999999999998753 3333344444444555666654 566999997543322221 222 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 130 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~ 130 (265)
+++|++++.......-..++..+.+.... ...|+++|+||+|+......+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~ 143 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTR 143 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCH
Confidence 99998887532112233455555543321 1278999999999964444333
No 40
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=1.3e-14 Score=134.51 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|...+.+...+++|.........+.+..+.+|||||+...... .+.+......++ .++|++
T Consensus 29 vG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i 106 (456)
T 4dcu_A 29 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI 106 (456)
T ss_dssp ECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH--HHCSEE
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH--hhCCEE
Confidence 69999999999999999887677777888888888888889999999999998743222 223333333333 378999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|+|++... .++..+..+++.+.+. .+|+++|+||+|+.
T Consensus 107 l~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 107 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT 144 (456)
T ss_dssp EEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred EEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence 99976442 4788888888777652 38999999999985
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.52 E-value=9.1e-14 Score=110.42 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++.... . .. .|.........+++..+.+|||||..+.... ...++ ..+|+++
T Consensus 13 ~G~~~~GKssl~~~l~~~~~~--~-~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~--~~~d~ii 79 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGEVV--T-TI-PTIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY--SNTDAVI 79 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSSCC--C-CC-CCSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCC--C-cC-CcCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh--ccCCEEE
Confidence 599999999999999987642 1 11 2334444566677899999999997432211 11111 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++++... +.... .++..+..... ....|+++|+||+|+.+
T Consensus 80 ~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 80 YVVDSCDRDRIGISK-SELVAMLEEEE-LRKAILVVFANKQDMEQ 122 (171)
T ss_dssp EEEETTCCTTHHHHH-HHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHH-HHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence 998876532 32222 33333322211 02379999999999953
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.52 E-value=5.6e-14 Score=112.34 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=72.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+..+.........+++ ..+.+|||||..+...... ..+ ..+|+
T Consensus 20 ~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~------~~~d~ 89 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYI------RDSTV 89 (179)
T ss_dssp EESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH---HHH------HTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH---HHh------cCCCE
Confidence 599999999999999987642 22222223334444555666 4789999999643322211 112 27899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++..........++..+....+.. .|+++|+||+|+...+.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~ 136 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQ 136 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCc
Confidence 999988765321122345566666554433 78999999999864333
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.52 E-value=6.3e-14 Score=112.19 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g---~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|+|++.... ....+..+.........+++ ..+.+|||||......... .++ ..+|
T Consensus 12 ~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-------~~~--~~~d 81 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLD-------KYI--YGAQ 81 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHH-------HHH--TTCS
T ss_pred ECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhh-------HHH--hhCC
Confidence 599999999999999987632 11111222334445556665 6889999999754432211 122 3789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~~ 124 (265)
++++|++++.......-..+++.+..........| +++|+||+|+.+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 99999887652211122345555555332111144 899999999854
No 44
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=1.2e-13 Score=113.99 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+..+.........+++ ..+.+|||||..+....... .+ ..+|+
T Consensus 26 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~------~~~d~ 95 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTA---YY------RGAMG 95 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHH---HH------TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH---Hh------ccCCE
Confidence 59999999999999998764 222223334444455666777 57899999997543322221 11 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++..........++..+....... .|+++|+||+|+.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 138 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 999988765321122245666666655433 7999999999993
No 45
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.51 E-value=7.9e-15 Score=136.60 Aligned_cols=114 Identities=22% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|.+|||||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.+.....+.. .++... ....+|++
T Consensus 239 vG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v 316 (476)
T 3gee_A 239 AGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMKMAEADLI 316 (476)
T ss_dssp ECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CCCSSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhhcccCCEE
Confidence 699999999999999999877788888888888777888899999999999996643221111 012221 23589999
Q ss_pred EEEEecCCcCCCH----HHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDN----LDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~----~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
|+|++.+.. .+. .+..+++.+ . .+|+++|+||+|+.+
T Consensus 317 l~VvD~s~~-~s~~~~~~~~~~l~~l----~---~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 317 LYLLDLGTE-RLDDELTEIRELKAAH----P---AAKFLTVANKLDRAA 357 (476)
T ss_dssp EEEEETTTC-SSGGGHHHHHHHHHHC----T---TSEEEEEEECTTSCT
T ss_pred EEEEECCCC-cchhhhHHHHHHHHhc----C---CCCEEEEEECcCCCC
Confidence 999877652 333 333333332 2 289999999999953
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.51 E-value=1.3e-13 Score=110.48 Aligned_cols=115 Identities=23% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.. ..+...+++..........++. .+.+|||||..+....... .+. .+|+
T Consensus 15 ~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~~------~~d~ 83 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQ---YMR------AGHG 83 (181)
T ss_dssp EECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHH---HHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHH---HHh------hCCE
Confidence 5999999999999999875 3344444554444445566664 6789999998654332222 122 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++.......-..++..+.+.... ...|+++|+||+|+.....
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 131 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQ 131 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccc
Confidence 99998877532112223444455333321 1279999999999964333
No 47
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.51 E-value=1.2e-13 Score=113.73 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=74.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+..+.........+++. .+.+|||||..+....... ++ ..+|+
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~ 83 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY--RGSHG 83 (206)
T ss_dssp EESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH-------hc--cCCCE
Confidence 599999999999999987642 222222333344445556664 7899999997654332221 11 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+++|++++..........++..+....... .|+++|+||+|+......
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~ 131 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVV 131 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcccccc
Confidence 999988775321122334566666554333 789999999999644333
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.51 E-value=1.7e-14 Score=133.12 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|+|...+.+++.+++|.+.......+++..+.+|||||+...... .+.+......++ .++|++
T Consensus 9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i 86 (436)
T 2hjg_A 9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI 86 (436)
T ss_dssp ECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--HHCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence 69999999999999999887777788888888888888889999999999998633211 112222222222 378999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
|+|++... ..+..+..+.+.+.+. .+|+++|+||+|+.+
T Consensus 87 l~vvD~~~-~~~~~d~~~~~~l~~~-----~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 87 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNTE 125 (436)
T ss_dssp EEEEETTT-CSCHHHHHHHHHHTTC-----CSCEEEEEECCCC--
T ss_pred EEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCcc
Confidence 99977653 4677777666666532 389999999999853
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.51 E-value=1.8e-13 Score=109.80 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=72.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++....... .+..+.........+.+ ..+.+|||||..+..... ..++ ..+|+
T Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ 87 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMYY--RGAAA 87 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT-------HHHH--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh-------HHHh--ccCCE
Confidence 599999999999999987642221 12222222333444444 478999999964322111 1122 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|++++..........++..+....... .|+++|+||+|+.......
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~ 136 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVT 136 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCC
Confidence 999988765322233446666666654332 7899999999996444433
No 50
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.51 E-value=2.6e-13 Score=106.66 Aligned_cols=112 Identities=21% Similarity=0.130 Sum_probs=70.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+... .....+. .+|+
T Consensus 9 ~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~------~~~~ 77 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYMR------TGEG 77 (166)
T ss_dssp EESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---HHHHHHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---HHHHhhc------cCCE
Confidence 59999999999999998763 222233333333344455554 578999999754321 1111222 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..+++.+...... ...|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 99998776432112224555666554431 1279999999999864
No 51
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.51 E-value=1.4e-13 Score=110.77 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=74.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.. ......+++..........++ ..+.+|||||..+.......+ ...+|+
T Consensus 12 ~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---------~~~~~~ 80 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTY---------SIDING 80 (181)
T ss_dssp EESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGG---------TTTCSE
T ss_pred ECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHH---------HhcCCE
Confidence 5999999999999999765 233444454444445556666 456899999986653322211 137899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 130 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~ 130 (265)
+++|++++.......-..++..+.+.... ...|+++|+||+|+......+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~ 131 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISY 131 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecH
Confidence 99998887532112223455555554432 1279999999999964444443
No 52
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=1.7e-13 Score=111.80 Aligned_cols=113 Identities=19% Similarity=0.097 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.... ....++...........++ ..+.+|||||..+.. . ....++ ..+|+
T Consensus 14 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~--~~~d~ 82 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGTFR--DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP----A---MQRLSI--SKGHA 82 (199)
T ss_dssp EECTTSSHHHHHHHHHHSCCC--CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH----H---HHHHHH--HHCSE
T ss_pred ECCCCCcHHHHHHHHHcCCCC--CcccCccccceeEEEEECCEEEEEEEEeCCChHHhH----H---HHHHhh--ccCCE
Confidence 599999999999999987632 1122222222222333444 468999999974321 1 111222 25799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++..........++..+.+..+.....|+++|+||+|+.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 9999887753211222345555655543222379999999999963
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.51 E-value=1.6e-13 Score=108.21 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+.. .....++ ..+|+
T Consensus 10 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~~d~ 78 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYF--RSGEG 78 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHh--hcCCE
Confidence 59999999999999998763 233334444444444555654 68999999974321 1122222 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+++|++++..........++..+.+.... ...|+++|+||+|+......
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~ 127 (168)
T 1u8z_A 79 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQV 127 (168)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCcc
Confidence 99998877532112234555566555431 12799999999998543333
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.51 E-value=9.2e-14 Score=112.38 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|++++... .... .|.........+++..+.+|||||..+ .......+ ...+|+++
T Consensus 24 ~G~~~~GKssl~~~l~~~~~---~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~--~~~~d~ii 90 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGEDV---DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKS-------LRSYWRNY--FESTDGLI 90 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCCC---SSCC-CCSSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGGG--CTTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCC---Cccc-ccCccceEEEEECCEEEEEEECCCCHh-------HHHHHHHH--hcCCCEEE
Confidence 59999999999999998762 2222 233344456667889999999999732 11111111 25789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+|++++..........++..+.+... ....|+++|+||+|+..
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG 133 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence 99887653211222233433333211 11279999999999953
No 55
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3.5e-13 Score=109.22 Aligned_cols=109 Identities=9% Similarity=-0.005 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++.......+ |.........+++..+.+|||||..+...... .++ ..+|+++
T Consensus 22 ~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~ii 88 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWN-------TYY--TNTEFVI 88 (187)
T ss_dssp EESTTSSHHHHHHHHHTTSCEEEEC----CSCSSCEEEEETTEEEEEEECCC----CGGGH-------HHH--TTCCEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcC----CCccceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh--cCCCEEE
Confidence 5999999999999999876432221 22222345556789999999999854332221 111 3789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++....-.....++..+.+... ....|+++|+||+|+.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK 130 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence 99887653211222334444443211 1238999999999995
No 56
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.4e-13 Score=115.09 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++....... .+..+.........+++ ..+.+|||||.......... + ...+|+
T Consensus 19 ~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~~~~d~ 88 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSA-------Y--YRGAVG 88 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------G--TTTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHH-------H--hccCCE
Confidence 699999999999999987642222 12223333344555666 57899999997554322211 1 147899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++..........++..+....... .|+++|+||+|+..
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 999987765321122335566666554332 78999999999954
No 57
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.50 E-value=2.1e-13 Score=108.20 Aligned_cols=118 Identities=16% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|+|++........ ...+.........+++. .+.+|||||..+... .... .+ ..+|
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~---~~------~~~d 77 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH---CL------QTGD 77 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CH---HH------HHCS
T ss_pred ECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhh---hh------ccCC
Confidence 6999999999999999865422222 22334444455556664 578999999864321 1111 11 2579
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
++++|++++.......-..++..+...... ...|+++|+||+|+......+
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~ 128 (169)
T 3q85_A 78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVS 128 (169)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCC
Confidence 999998887633222233455555554331 137999999999985433433
No 58
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.50 E-value=2.3e-14 Score=133.66 Aligned_cols=109 Identities=27% Similarity=0.377 Sum_probs=83.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCC-CCCCCc-----HHHHHHHHHHHhcC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVN-----YHAIQLIKRFLLNK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~-~~~~~~-----~~~~~~i~~~l~~~ 74 (265)
+|.+|||||||+|+|++.+.+.+++.+++|.........++|.++.+|||||+. ++.... ......+.
T Consensus 249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~------ 322 (482)
T 1xzp_A 249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE------ 322 (482)
T ss_dssp ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH------
T ss_pred ECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh------
Confidence 699999999999999998876788888889888888888899999999999997 543221 22333444
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+|++|+|++.+. ..+..+.++++.+ . .+|+++|+||+|+.
T Consensus 323 ~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~ 363 (482)
T 1xzp_A 323 KADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVV 363 (482)
T ss_dssp HCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred cccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence 6799999987654 3455555555443 1 27999999999995
No 59
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=3.2e-13 Score=121.35 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=80.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|+|... .++..+.+|...........+..+.++||||+.+..... .-....+.. ....+|+
T Consensus 173 vG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~ad~ 249 (357)
T 2e87_A 173 AGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA--LRYLGNL 249 (357)
T ss_dssp ECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG--GGGTCSE
T ss_pred ECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH--HHhcCCE
Confidence 69999999999999999873 455556677766666666778899999999997643221 111112211 1236899
Q ss_pred EEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+|++++... ++ .....++..+...++ ..|+++|+||+|+.
T Consensus 250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred EEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 99997655422 23 334567777777664 28999999999984
No 60
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.50 E-value=1.9e-13 Score=111.45 Aligned_cols=111 Identities=11% Similarity=0.089 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++.....+. +. .|...........+..+.+|||||..+.... ...++ ..+|+++
T Consensus 23 ~G~~~~GKSsl~~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~--~~~d~ii 91 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPAQSSSKH-IT-ATVGYNVETFEKGRVAFTVFDMGGAKKFRGL-------WETYY--DNIDAVI 91 (199)
T ss_dssp ECCTTSCHHHHHHHHSCCC----C-CC-CCSSEEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGC--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCcccc-cc-cccceeEEEEEeCCEEEEEEECCCCHhHHHH-------HHHHH--hcCCEEE
Confidence 699999999999999998753322 22 2333444455677889999999998432211 11111 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcC------cCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFG------EQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g------~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +... ..++..+.+... .....|+++|+||+|+.
T Consensus 92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 998877532 2222 234443333211 00138999999999995
No 61
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.50 E-value=1.2e-13 Score=123.39 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=81.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~----~~~~~~~~i~~~l~~~~ 75 (265)
+|.+|||||||+|+|++... .++.++.+|..+......+.+ ..+.++||||+.+... ....+++.+. .
T Consensus 164 vG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~------~ 236 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE------R 236 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH------H
T ss_pred eCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH------h
Confidence 69999999999999999875 456677778777777777775 8999999999754221 2234555444 5
Q ss_pred ccEEEEEEecCC---cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~---~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++|+|++++. .........+++.+......-..+|+++|+||+|+.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 799999987764 221122334556666543222348999999999984
No 62
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=1.1e-13 Score=121.61 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=80.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH------hcC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL------LNK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l------~~~ 74 (265)
+|.+|+|||||+|+|+|...+.++..+++|..........++.++.++||||+.. .....+...+ ...
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~------~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM------EEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH------HHHHHHHHHHTCCTTSCCC
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc------cchhhHHHHHHHHHHHHHh
Confidence 6999999999999999998766676666777666666677888999999999851 0111111111 125
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+|++++|++.+. ++..+..+++.+... ..|+++|+||+|+.
T Consensus 88 ~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 88 DVELVIFVVEGTR--WTPDDEMVLNKLREG-----KAPVILAVNKVDNV 129 (301)
T ss_dssp CEEEEEEEEETTC--CCHHHHHHHHHHHSS-----SSCEEEEEESTTTC
T ss_pred cCCEEEEEEeCCC--CCHHHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence 7899999977653 778887777666532 28999999999984
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=3.1e-13 Score=106.49 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+.. .. ...++ ..+|+
T Consensus 9 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~~--~~~~~ 77 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----SM---RDLYI--KNGQG 77 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HH---HHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----HH---HHHHh--ccCCE
Confidence 699999999999999987632 22333333333445556655 48899999975321 11 11122 26699
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++.......-..++..+.+.... ...|+++|+||+|+.+...
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~ 125 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESERE 125 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccccc
Confidence 99998776522112233445555544321 2379999999999854333
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=1.3e-13 Score=109.04 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++..... ...+..+.........+++ ..+.+|||||..+... ....++ ..+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~--~~~d~ 78 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-------LAPXYY--RNAQA 78 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GHHHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh-------hhhhhh--ccCcE
Confidence 5999999999999999876421 1112122222233444554 4789999999643211 112222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++..........++..+.+....+ .|+++|+||+|+.+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 79 ALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc
Confidence 999988775322223334566666554333 789999999998643
No 65
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.49 E-value=2.3e-13 Score=107.46 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|++++.... .. . .|...........+..+.+|||||..+. ......++ .++|+++
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~--~~-~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~d~~i 72 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLGEIV--TT-I-PTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QNTQGLI 72 (164)
T ss_dssp ECSTTSSHHHHHHHHHHHCSS--CC-C-CCSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHT--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHHcCCcC--cc-c-CcCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHh--ccCCEEE
Confidence 699999999999999987632 21 1 2333334455667889999999998421 11222222 4889999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 73 ~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 73 FVVDSNDRERVNE-AREELMRMLAEDE-LRDAVLLVFANKQDLP 114 (164)
T ss_dssp EEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHH-HHHHHHHHHhchh-hcCCeEEEEEECcCCc
Confidence 998876532 222 2233333332211 1127999999999994
No 66
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=112.65 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....+++.........+++. .+.+|||||..+.. . ....++ ..+|+
T Consensus 20 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~--~~~~~ 88 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----A---IRDNYF--RSGEG 88 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH----H---HHHHHH--hhCCE
Confidence 59999999999999998763 333444444444445556664 68999999975432 1 112222 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|++++..........++..+...... ...|+++|+||+|+......+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~ 138 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVS 138 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccccccc
Confidence 99998877532112234555666555431 137999999999996433333
No 67
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.49 E-value=2e-13 Score=112.46 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++..... ...+..+.........+++ ..+.+|||||..+. ......++ ..+|+
T Consensus 35 vG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~d~ 104 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTITQSYY--RSANG 104 (201)
T ss_dssp EECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHHHHHHH--TTCSE
T ss_pred ECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHH--hhCCE
Confidence 5999999999999999876321 1111112233344555666 47899999997321 11222232 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|++++.......-..+++.+.+..... .|+++|+||+|+...+..+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~ 153 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVS 153 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccC
Confidence 999988765221122235666666654333 7899999999995433333
No 68
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.49 E-value=1.2e-13 Score=112.01 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++...... . .|..........++..+.+|||||..+....... + ...+|+++
T Consensus 28 ~G~~~~GKssli~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~-------~--~~~~d~ii 94 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLGDVVTT--V--PTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC-------Y--FSDTDAVI 94 (189)
T ss_dssp EEETTSSHHHHHHHTCCSCCEEE--C--SSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSS-------S--STTCCEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCc--C--CCCceEEEEEEECCEEEEEEECCCCHhHHHHHHH-------H--hhcCCEEE
Confidence 58999999999999998764221 1 2333344456677899999999998654322211 1 13789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +... ..++..+..... ....|+++|+||+|+.
T Consensus 95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 95 YVVDSTDRDRMGVA-KHELYALLDEDE-LRKSLLLIFANKQDLP 136 (189)
T ss_dssp EEEETTCCTTHHHH-HHHHHHHHTCST-TTTCEEEEEEECTTST
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhhh-cCCCeEEEEEECCCCc
Confidence 998876532 2222 233333322111 1237999999999995
No 69
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.49 E-value=1.4e-13 Score=112.23 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+..... ..+ ...+|+
T Consensus 29 vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~--~~~~d~ 97 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR-------PLS--YADSDV 97 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG-------GGG--CTTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHh-------Hhh--ccCCcE
Confidence 69999999999999999873 233333433333344455554 45999999964322111 111 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++... +......++..+...... .|+++|+||+|+..
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcc
Confidence 99998877532 222234566666655432 79999999999963
No 70
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.49 E-value=1.9e-13 Score=111.26 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++....... .+..+..........++ ..+.+|||||..+....... ++ ..+|+
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~ 96 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS-------YY--RGAAG 96 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH-------HH--TTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHH-------Hh--ccCCE
Confidence 599999999999999987642222 12223333344555666 47899999997544332221 11 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++.......-..++..+....... .|+++|+||+|+..
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES 140 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCC
Confidence 999988765321122235666666554333 78999999999954
No 71
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.49 E-value=1.6e-14 Score=134.13 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=75.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|.+|+|||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.+.....+.. .+++.. ....+|++
T Consensus 230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v 307 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQAANTADLV 307 (462)
T ss_dssp EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CCCCSCSEE
T ss_pred EcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhhhhcCCEE
Confidence 599999999999999998766677777787777666777899999999999996543221111 112222 23578999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
|+|++.+. ..+..+..+++.+.. +|+++|+||+|+.+
T Consensus 308 l~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~ 344 (462)
T 3geh_A 308 LLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVE 344 (462)
T ss_dssp EEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred EEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence 99987764 466666666665532 69999999999853
No 72
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.48 E-value=6.4e-13 Score=106.16 Aligned_cols=113 Identities=22% Similarity=0.164 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+..+.........+++. .+.+|||||..+. ......++ ..+|+
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~ 82 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY--RGSDC 82 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH--hcCCE
Confidence 699999999999999987632 121222222333345556664 7899999996321 11222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~ 123 (265)
+++|++++.......-..+++.+...... ....|+++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99998877532112224556666555431 1237999999999985
No 73
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.48 E-value=1.3e-13 Score=119.19 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|+|... .++..+++|.........+.+..+.+|||||+.+......+. ...+.++....+|+++
T Consensus 9 vG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~~d~vi 86 (271)
T 3k53_A 9 VGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILDGNADVIV 86 (271)
T ss_dssp EECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHTTCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhccCCcEEE
Confidence 59999999999999999875 677777788877777888899999999999998654332211 1234455557899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++... . .....+...+.+.. . .|+++|+||+|+.
T Consensus 87 ~v~D~~~--~-~~~~~~~~~~~~~~-~---~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 87 DIVDSTC--L-MRNLFLTLELFEME-V---KNIILVLNKFDLL 122 (271)
T ss_dssp EEEEGGG--H-HHHHHHHHHHHHTT-C---CSEEEEEECHHHH
T ss_pred EEecCCc--c-hhhHHHHHHHHhcC-C---CCEEEEEEChhcC
Confidence 9966553 2 22333344443321 1 7899999999974
No 74
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.48 E-value=8.7e-14 Score=110.93 Aligned_cols=119 Identities=15% Similarity=0.064 Sum_probs=66.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++..........+. ........+++. .+.+|||||...... ..+... ....+|+
T Consensus 10 ~G~~~vGKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-~~~~~~~ 80 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQERDLHEQLGE--DVYERTLTVDGEDTTLVVVDTWEAEKLDK------SWSQES-CLQGGSA 80 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-----CCCSSS--SEEEEEEEETTEEEEEEEECCC-------------CHHHHH-TTTSCSE
T ss_pred ECCCCccHHHHHHHHhcCCCccccCcccc--ceeEEEEEECCEEEEEEEEecCCCCccch------hhhHHh-hcccCCE
Confidence 69999999999999999875433332222 223344556664 678999999854210 111111 1246899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|+++++.........++..+.+... ....|+++|+||+|+.+....+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~ 130 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVS 130 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccC
Confidence 9999888753211222345555554321 1137999999999996444443
No 75
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.48 E-value=7.4e-14 Score=110.52 Aligned_cols=116 Identities=14% Similarity=0.034 Sum_probs=60.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++......+...+++. ......++ ..+.+|||||......... .++ ..+|+
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~--~~~~~ 75 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRWLPG-------HCM--AMGDA 75 (166)
T ss_dssp EESTTSSHHHHHHHHCCC----------CEE---EEEEEETTEEEEEEEEECC------------------------CCE
T ss_pred ECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEECCEEEEEEEEECCCCccchhhhh-------hhh--hhCCE
Confidence 5999999999999999877544433333222 22334444 4678999999754322111 111 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|+++++.........++..+.+... ....|+++|+||+|+.+....+
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~ 125 (166)
T 3q72_A 76 YVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVS 125 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccC
Confidence 9999888753321223344555544321 1237999999999996544433
No 76
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.48 E-value=4.9e-13 Score=109.30 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++..... .. .|...........+..+.+|||||..+...... ..+ ..+|+++
T Consensus 35 ~G~~~vGKSsLi~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~------~~~d~ii 101 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWR---HYF------QNTQGLI 101 (192)
T ss_dssp EESTTSSHHHHHHHHCSSCCEE--EE--EETTEEEEEEEETTEEEEEEECC-----CTTHH---HHH------HTCCEEE
T ss_pred ECCCCCCHHHHHHHHHhCCccc--cC--CcCceeEEEEEECCEEEEEEECCCCHhHHHHHH---HHh------ccCCEEE
Confidence 5999999999999999876422 11 233334445667889999999999854332211 122 2789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +.. ...++..+.+... ....|+++|+||+|+.
T Consensus 102 lv~D~~~~~s~~~-~~~~l~~~~~~~~-~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 102 FVVDSNDRERVQE-SADELQKMLQEDE-LRDAVLLVFANKQDMP 143 (192)
T ss_dssp EEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHH-HHHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence 998876532 222 2233333332111 1137999999999994
No 77
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=111.88 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||..+. ......++ ..+|+
T Consensus 32 vG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d~ 101 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYY--RSAKG 101 (192)
T ss_dssp ECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HHHHHHHh--cCCCE
Confidence 59999999999999999764221 112222333344455666 46899999996321 11122222 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++.......-..+++.+....... .|+++|+||+|+.....
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~ 148 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDRE 148 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccc
Confidence 999988775321122234556666554333 78999999999854333
No 78
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.48 E-value=2.2e-13 Score=107.63 Aligned_cols=113 Identities=17% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........+ +..+.+|||||..+.... ....++ .+|+
T Consensus 9 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~------~~d~ 77 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM---RDLYMK------NGQG 77 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH---HHHHHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHH---HHHHhc------cCCE
Confidence 59999999999999998753 2222333332223333444 346899999997543321 111222 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++.......-..+++.+.+.... ...|+++|+||+|+...
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE 123 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence 99998877532112223455555554321 23799999999999543
No 79
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=2.9e-13 Score=109.49 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=76.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++... .++..+++|..........++..+.+|||||..+...... .......++....+|+++
T Consensus 13 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~i 90 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIINEKPDLVV 90 (188)
T ss_dssp ECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH-HHHHHHHHHHHHCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH-HHHHHHHHHhccCCCEEE
Confidence 69999999999999999764 4555566666666677778899999999999876432211 111122233323689999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++... + .....++..+.+. ..|+++|+||+|+.
T Consensus 91 ~v~d~~~--~-~~~~~~~~~~~~~-----~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 91 NIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 125 (188)
T ss_dssp EEEEGGG--H-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred EEecchh--H-HHHHHHHHHHHhc-----CCCEEEEEEhhhcc
Confidence 9966542 2 2333444444432 27899999999984
No 80
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.47 E-value=8.8e-14 Score=110.11 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++........ +..+..........+ +..+.+|||||..+... ....++ ..+|+
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~--~~~d~ 81 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQFHEFQE-STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS-------LAPMYY--RGAQA 81 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCC-CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GHHHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh-------hhHHhc--cCCCE
Confidence 5999999999999999876422111 111111112233333 45789999999743211 111222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++++..........++..+.+...+. .|+++|+||+|+.+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLAN 125 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCcc
Confidence 999988765321122335556666554433 78999999999854
No 81
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.47 E-value=2.9e-13 Score=109.92 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=70.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++...... ..+..+........... +..+.+|||||..+...... .++ ..+|+
T Consensus 28 vG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~~d~ 97 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY--RGAMG 97 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCS-CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCC-cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc--cCCCE
Confidence 69999999999999998764221 11112222222333344 35789999999765432221 111 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
+++|++++..........++..+.+..... .|+++|+||+|+....
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDER 143 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence 999988765321222345666666654222 7999999999995433
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.47 E-value=7.1e-13 Score=107.70 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++.... .... .|...........+..+.+|||||..+ .......++ ..+|+++
T Consensus 28 ~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~--~~~d~ii 95 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQFN--EDMI-PTVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC--RGVSAIV 95 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC--CSCC-CCCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCC--CccC-CCCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHH--ccCCEEE
Confidence 699999999999999987642 1112 233333344567788999999999632 222222232 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++..........++..+.+... ....|+++|+||+|+.
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP 137 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence 99887653211222233333332211 1237999999999995
No 83
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.47 E-value=2.7e-13 Score=117.52 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=78.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|+|... .++..+++|.......... +..+.+|||||..+......+ ....+.++....+|+++
T Consensus 9 vG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~~d~vi 85 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLSQRADSIL 85 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHTTCCSEEE
T ss_pred ECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhcCCCCEEE
Confidence 69999999999999999864 5777777787766666555 778999999998764322211 11223344445799999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.+. . .....+...+.+. ..|+++|+||+|+.
T Consensus 86 ~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 86 NVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp EEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred EEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 9976553 2 2233444445442 28999999999984
No 84
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.47 E-value=3.8e-13 Score=108.82 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.+.......+ |.........+++..+.+|||||.... ......++ ..+|+++
T Consensus 22 vG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~~~~i 88 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI-------RPYWRSYF--ENTDILI 88 (181)
T ss_dssp EESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG-------HHHHHHHH--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--CCCCEEE
Confidence 5999999999999999986432221 222333455667899999999997421 11222222 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +... ..++..+.+..+ ....|+++|+||+|+.
T Consensus 89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 89 YVIDSADRKRFEET-GQELTELLEEEK-LSCVPVLIFANKQDLL 130 (181)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred EEEECcCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECcCcc
Confidence 998876522 2222 223333322111 1237999999999995
No 85
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.47 E-value=1.1e-13 Score=111.68 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++..... ...+..+..........++ ..+.+|||||..+. ......++ ..+|+
T Consensus 16 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ 85 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY--RGAAG 85 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS--TTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH--hcCCE
Confidence 5999999999999999876422 1112222233334455566 57899999996321 11222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++.......-..++..+......+ .|+++|+||+|+.+...
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~ 132 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADRE 132 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccc
Confidence 999988775321122235566666554333 79999999999954333
No 86
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.46 E-value=5.1e-14 Score=113.51 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+..+.........+++ ..+.+|||||..+.... ...+ ...+|+
T Consensus 14 ~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~--~~~~d~ 83 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAY--YRGAMG 83 (183)
T ss_dssp ECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTT--TTTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-------HHHH--HhcCCE
Confidence 59999999999999998753 111112222233334455666 67899999997432211 1111 147899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
+++|++++.......-..++..+......+ .|+++|+||+|+.+....+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~ 132 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVS 132 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCC
Confidence 999988775321122234666666554333 7999999999996433333
No 87
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.46 E-value=6.9e-13 Score=107.67 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHH-HHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAI-QLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||..+ .. .....++ ..+|
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~--~~~d 95 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDGERIKIQLWDTAGQER-------FRKSMVQHYY--RNVH 95 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-------HHTTTHHHHH--TTCC
T ss_pred ECCCCCCHHHHHHHHHcCCCCCC-CCCCcceEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhhHHHh--cCCC
Confidence 59999999999999998764221 122223333344555565 5789999999621 21 1222222 4789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
++++|++++..........+++.+.+.... ...|+++|+||+|+...
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 999998876422112234466666665421 23789999999999543
No 88
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=112.02 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++........ +..+..........+ +..+.+|||||..+..... ..++ ..+|+
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ 100 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT-------SAYY--RGAVG 100 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCSSCC-CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH-------HHHH--TTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh-------HHHh--ccCCE
Confidence 6999999999999999976432221 111111222233333 4578999999986543221 1111 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++..........++..+...... ..|+++|+||+|+...
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccc
Confidence 99998776422111223455555544322 3789999999999543
No 89
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=113.17 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++..... ...+..+..........++ ..+.+|||||..+..... ..++ ..+|+
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~--~~~d~ 100 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT-------RSYY--RGAAG 100 (200)
T ss_dssp EESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC-------HHHH--TTCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH-------HHHh--ccCCE
Confidence 5999999999999999876422 1122223333344555666 578999999963222111 1112 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+++|++++.......-..++..+....... .|+++|+||+|+......
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v 148 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREV 148 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccccccc
Confidence 999988775321122235555565544333 789999999998533333
No 90
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=1.4e-13 Score=110.76 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++....... .|.........+++..+.+|||||..+...... .++ ..+|+++
T Consensus 24 ~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~ii 90 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY--ADTAAVI 90 (183)
T ss_dssp EEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEETTEEEEEEEEC----CCTTGG-------GTT--TTEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCcCccC----CcCccceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh--ccCCEEE
Confidence 599999999999999987642222 222233445667789999999999865332211 111 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++..........++..+.+... ....|+++|+||+|+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP 132 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence 99887643211222233333322210 1237999999999995
No 91
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=8.8e-13 Score=107.77 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=71.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++.... ....+++.........+++ ..+.+|||||..+ .......++ .+|+
T Consensus 34 ~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~------~~d~ 101 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHMR------WGEG 101 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhhc------cCCE
Confidence 599999999999999987642 2223333333333344555 4689999999865 222222222 6799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+++|++++.......-..+++.+.+.... ...|+++|+||+|+......
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v 150 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQV 150 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccccccc
Confidence 99998877522112223455555554321 13789999999999543333
No 92
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=110.53 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.. ......+++..........++. .+.+|||||..+...... .+ ...+|+
T Consensus 26 ~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~~~~~~ 94 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP-------LC--YTNTDI 94 (201)
T ss_dssp ECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG-------GG--GTTCSE
T ss_pred ECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH-------hh--cCCCcE
Confidence 6999999999999999876 3344445555444455666775 567999999865433221 11 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 99998877532 22222246666666543 38999999999985
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=109.90 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++...+... . ..|.........+++..+.+|||||..+..... ..++ ..+|+++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~--~~~d~ii 95 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY--KEGQAII 95 (190)
T ss_dssp EECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG--GGCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH--hcCCEEE
Confidence 599999999999999998632222 2 234445556677788999999999975432211 1112 3789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +... ..++..+.+.... ....|+++|+||+|+.
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 998776422 2222 2344444333211 0238999999999995
No 94
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.44 E-value=1.9e-13 Score=112.10 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC----eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG----FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g----~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~ 75 (265)
+|.+|+|||||+|+|++......+...+++. ........+++ ..+.+|||||.. ........+ ...
T Consensus 26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~--~~~ 96 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQISQY--WNG 96 (208)
T ss_dssp C----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHSTT--CCC
T ss_pred ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHHHH--Hhh
Confidence 6999999999999999983223333333332 33334455554 578999999982 222222222 257
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL 124 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~ 124 (265)
+|++++|++++..........++..+....+. ....|+++|+||+|+..
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 89999998877532222334566677665441 02379999999999964
No 95
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.44 E-value=7.2e-13 Score=107.45 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....+++..........++. .+.+|||||..+... ....++ ..+|+
T Consensus 27 vG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~--~~~d~ 95 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM--RTGEG 95 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------C--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhh--CcCCE
Confidence 59999999999999998763 233334444444445556664 588999999743221 112222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++.........+++.+...... ...|+++|+||+|+.+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 99998877532112223455555554331 1279999999999864
No 96
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=2.6e-13 Score=110.51 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++ ..+.+|||||..+...... .+ ...+|+
T Consensus 24 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--~~~~d~ 92 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS--YPMTDV 92 (194)
T ss_dssp EECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG--CTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh--cCCCCE
Confidence 59999999999999998753 33334444444444555666 5789999999865432211 11 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+.+... ..|+++|+||+|+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 135 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTST
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 99998876532 33333356667766543 28999999999995
No 97
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.44 E-value=7.5e-13 Score=108.56 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++...... ..+..+..........++ ..+.+|||||..+. ......++ ..+|+
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ 83 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY--RGAMG 83 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG--GGCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh--cCCCE
Confidence 69999999999999999874221 111112222223334443 57899999997321 11222222 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++..........++..+...... ..|+++|+||+|+.....
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSCC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcccc
Confidence 99998876532112233456666554422 379999999999964333
No 98
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=2.4e-13 Score=112.33 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.... ....+++..........++ ..+.+|||||..+...... .+ ...+|+
T Consensus 31 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~~~~d~ 99 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------LS--YPDTDV 99 (207)
T ss_dssp EECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG-------GG--CTTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hh--cCCCCE
Confidence 599999999999999987642 2222333333333455666 4678999999865432211 11 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +...+..++..+..... ..|+++|+||+|+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLR 142 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhh
Confidence 99998887532 33333556677766432 28999999999985
No 99
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.43 E-value=9.8e-13 Score=117.00 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++.... ... .|...........+..+.+|||||........ ..++ ..+|++|
T Consensus 171 vG~~~vGKSsLl~~l~~~~~~--~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~ad~vi 237 (329)
T 3o47_A 171 VGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW-------RHYF--QNTQGLI 237 (329)
T ss_dssp EESTTSSHHHHHHHTCSSCCE--EEE--EETTEEEEEEEETTEEEEEEECC-----CCSH-------HHHH--TTEEEEE
T ss_pred ECCCCccHHHHHHHHhCCCCC--Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHHHH-------HHHh--ccCCEEE
Confidence 599999999999999998742 222 24445555677788999999999964433221 1122 3789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +......+.+.+...... ..|+++|+||+|+.
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~ 279 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLP 279 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTST
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCC
Confidence 998886533 333333333333332212 27899999999995
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.43 E-value=5.6e-13 Score=117.40 Aligned_cols=118 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHH-HHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~-~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++.....++...++|.........+ ++..+.+|||||..+. .+.+.. ....++ .++|+
T Consensus 9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~--~~ad~ 83 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF--QMVQV 83 (307)
T ss_dssp ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH--TTCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh--ccCCE
Confidence 6999999999999999985445555566677666655554 5678999999997321 000101 111122 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++.......-..+.+.+..........|+++|+||+|+.
T Consensus 84 vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 84 LIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 999988775321122223333333322111228999999999985
No 101
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.43 E-value=5.5e-13 Score=107.85 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccE-EEEeeeC-----------CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRA-----------GFTLNIVDTPGLIEGGYVNYHAIQLIK 68 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~v~iiDTPG~~~~~~~~~~~~~~i~ 68 (265)
+|.+|+|||||+|+|++.... ....+..+.... ....... ...+.+|||||... ......
T Consensus 17 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~ 88 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FRSLTT 88 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HHHHHH
Confidence 599999999999999987631 111111111111 1233333 34789999999732 112222
Q ss_pred HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
.++ ..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus 89 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 89 AFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLED 141 (195)
T ss_dssp HTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGG
T ss_pred HHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 222 4789999998776422112224556666554431 2379999999999854
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.43 E-value=5.3e-13 Score=108.91 Aligned_cols=109 Identities=10% Similarity=0.091 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.+...... ..|.........+++..+.+|||||..+..... ..++ ..+|+++
T Consensus 29 vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~~i 95 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW-------KDYF--PEVNGIV 95 (190)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG-------GGGC--TTCCEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH-------HHHH--hcCCEEE
Confidence 59999999999999998764221 234444556777889999999999985432211 1111 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++..........++..+.+... ....|+++|+||+|+.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence 99887753211222334444433211 1237999999999995
No 103
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=111.41 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++.... ....+++.......... .+..+.+|||||..+.......+ + ..+|+
T Consensus 30 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------~--~~~d~ 98 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSF-------I--IGVHG 98 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGG-------T--TTCCE
T ss_pred ECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHH-------H--hcCCE
Confidence 599999999999999988742 22233333222333333 34678999999976544332211 1 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL 128 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~ 128 (265)
+++|++++.......-..++..+....+. ...|+++|+||+|+.+....
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v 147 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREV 147 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCcccccc
Confidence 99998877532112223445555443221 13789999999998644433
No 104
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.5e-13 Score=110.45 Aligned_cols=130 Identities=14% Similarity=0.094 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc-CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|++....... ...+++ ...+.+..+.+|||||..+.......++ ...+ ..+|++
T Consensus 54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---~~~~--~~~~~~ 122 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKLRYKLSDYL---KTRA--KFVKGL 122 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHH---HHHG--GGEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcccccCCCce------eeeecCCeEEEEECCCCchHHHHHHHHH---Hhhc--ccCCEE
Confidence 699999999999999987632110 111111 1122566789999999866543322222 2111 357999
Q ss_pred EEEEecC-CcC-CCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586 80 LYVDRLD-VYR-VDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF 144 (265)
Q Consensus 80 L~V~~~d-~~r-~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~ 144 (265)
++|++.+ ... +... ..++..+..... .....|+++|+||+|+.. ....++..+...+.+.++
T Consensus 123 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 123 IFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFT--ARPPSKIKDALESEIQKV 188 (193)
T ss_dssp EEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT--CCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcC--CCCHHHHHHHHHHHHHHH
Confidence 9998776 211 2111 223333322211 111389999999999953 334444443333334333
No 105
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.42 E-value=8e-13 Score=116.16 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=45.9
Q ss_pred CeEEEEEeCCCCCCCC------CCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEE
Q 024586 42 GFTLNIVDTPGLIEGG------YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~------~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~i 114 (265)
+.++.+|||||+.+.. ...+........++ ..+|++++|++.....+...+ ..+++.+... ..|++
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~-----~~~~i 202 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEVDPE-----GKRTI 202 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-----CSSEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHhCCC-----CCcEE
Confidence 4579999999997522 11222333334343 378998888765332344333 3555554432 38999
Q ss_pred EEEeCccCCCC
Q 024586 115 IVLTHAQLSLP 125 (265)
Q Consensus 115 vV~tk~D~~~~ 125 (265)
+|+||+|+...
T Consensus 203 ~v~NK~Dl~~~ 213 (315)
T 1jwy_B 203 GVITKLDLMDK 213 (315)
T ss_dssp EEEECTTSSCS
T ss_pred EEEcCcccCCc
Confidence 99999999643
No 106
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.42 E-value=2.5e-13 Score=109.28 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+..... ..+ ...+|+
T Consensus 11 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~--~~~~d~ 79 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLS--YPQTDV 79 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG-------GGG--CTTCSE
T ss_pred ECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHH-------HHh--ccCCcE
Confidence 59999999999999997653 233333444444444555665 45699999985432111 111 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+.+..+ ..|+++|+||+|+.
T Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 80 SLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence 99998877522 33333356667766543 38999999999985
No 107
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.42 E-value=1.9e-12 Score=105.26 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... ...+.+++..........++ ..+.+|||||....... ..++ ..+|+
T Consensus 27 vG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~--~~~~~ 94 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC--------ERYL--NWAHA 94 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT--------HHHH--TTCSE
T ss_pred ECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH--------HHHH--hhCCE
Confidence 69999999999999998762 23334444333333444555 46789999998644321 1122 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++.......-..++..+...... ....|+++|+||+|+.....
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 144 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ 144 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc
Confidence 99998887532112223455666554310 11279999999999853333
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.42 E-value=2.7e-13 Score=109.46 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++..........+ .......+++..+.+|||||..+..... ..++ ..+|+++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ii 93 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSW-------NTYY--TNTEFVI 93 (181)
T ss_dssp EEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETTEEEEEEEESSSGGGTCGG-------GGGG--TTCCEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECCEEEEEEECCCCHhHHHHH-------HHHh--ccCCEEE
Confidence 5899999999999999987522222222 2223455688999999999985432211 1111 4789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++..........++..+.+... ....|+++|+||+|+.
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence 99887653211222333443333211 1237999999999995
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.42 E-value=3.2e-12 Score=105.73 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHH-HHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~-~i~~~l~~~~~ 76 (265)
+|.+|||||||+|+|++... .....+++. ......++ +..+.+|||||.. .+.. ....++ .++
T Consensus 13 vG~~~~GKTsli~~l~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~~--~~~ 79 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQY--RDTQTSITD--SSAIYKVNNNRGNSLTLIDLPGHE-------SLRFQLLDRFK--SSA 79 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CCBCCCCSC--EEEEEECSSTTCCEEEEEECCCCH-------HHHHHHHHHHG--GGE
T ss_pred ECCCCCCHHHHHHHHhCCCc--ccccCCcce--eeEEEEecCCCccEEEEEECCCCh-------hHHHHHHHHHH--hhC
Confidence 69999999999999998763 233333332 22335555 6789999999983 2222 222222 478
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhc----CcCcCCcEEEEEeCccCCC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNF----GEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~----g~~~~~~~ivV~tk~D~~~ 124 (265)
|++++|++++. +........+.+.... ......|+++|+||+|+..
T Consensus 80 ~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 80 RAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred CEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 99999977653 2222233333333221 1122379999999999953
No 110
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=110.08 Aligned_cols=111 Identities=19% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||..+.. . ....++ ..+|+
T Consensus 34 ~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~----~~~~~~--~~~d~ 103 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNEFREN-ISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---S----IAKSYF--RKADG 103 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCH---H----HHHHHH--HHCSE
T ss_pred ECcCCCCHHHHHHHHHhCCCCcc-CCCCccceeEEEEEEECCEEEEEEEEECCCCcchh---h----hHHHHH--hhCCE
Confidence 59999999999999998763211 111112222233444555 468999999974321 1 112222 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++..........+++.+....... .|+++|+||+|+.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 999988765321122345566666554333 7999999999984
No 111
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.42 E-value=5e-13 Score=111.12 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....+++.........+++. .+.+|||||..+.... ...++ .++|+
T Consensus 40 vG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~--~~~d~ 108 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL-------RPLFY--PDASV 108 (214)
T ss_dssp EECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------------CEEE
T ss_pred ECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHH-------HHHHh--ccCCE
Confidence 59999999999999998763 222333443333444555655 6799999997433211 11111 37899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+..... ..|+++|+||+|+.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhh
Confidence 99998876422 22222346666665442 27999999999985
No 112
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.41 E-value=6.8e-13 Score=109.05 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++.... ....+++..........++. .+.+|||||..+...... .+ ...+|+
T Consensus 31 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~--~~~~d~ 99 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP-------LS--YPDTDV 99 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCC--SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG--CTTCSE
T ss_pred ECCCCCCHHHHHHHHHhCcCC--cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH-------Hh--cCCCCE
Confidence 599999999999999987642 22223333333334455654 789999999743221111 11 247899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+..... ..|+++|+||+|+.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhh
Confidence 99998877532 33333456666666432 28999999999995
No 113
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=1.3e-12 Score=117.74 Aligned_cols=118 Identities=20% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i 79 (265)
+|.+|+|||||+|+|+|... .+++...+|..+......++|..+.++||||+.... .....+.++..+ ....+|++
T Consensus 185 vG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~~~~~aD~i 261 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI--PPQIVDAFFVTLSEAKYSDAL 261 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC--CGGGHHHHHHHHHGGGGSSEE
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC--CHHHHHHHHHHHHHHHhCCEE
Confidence 69999999999999999874 556666778777778888899999999999975421 111112222222 12478999
Q ss_pred EEEEecCCcC--CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r--~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++.+... .......+.+.+......+ .|+++|+||+|+.
T Consensus 262 l~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 262 ILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKI 305 (364)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGC
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCC
Confidence 9997765321 1111112233343332122 7899999999985
No 114
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.2e-13 Score=121.89 Aligned_cols=112 Identities=19% Similarity=0.273 Sum_probs=82.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~~ 76 (265)
||.++||||||+|+|+|... .+++++.+|..+......+.+.++.++||||+.++.... ...+..++ .+
T Consensus 78 vG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~------~a 150 (376)
T 4a9a_A 78 VGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR------TC 150 (376)
T ss_dssp ECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH------HC
T ss_pred ECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH------hc
Confidence 69999999999999999874 778899999999999999999999999999998754332 23444444 67
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQL 122 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~ 122 (265)
|++++|++... ...+.+.+..-...++.. ..+|.++++||.|.
T Consensus 151 d~il~vvD~~~---p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNK---PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTS---HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred CccccccccCc---cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999965542 123444444333444432 23688999999986
No 115
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.41 E-value=4.7e-13 Score=107.17 Aligned_cols=113 Identities=16% Similarity=0.066 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|+|||||+|+|++..... ...+..+.........++ ...+.+|||||..+.. .....+ ...+|
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~--~~~~d 83 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAF--YRGAD 83 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CC--STTCC
T ss_pred ECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHH--hhcCC
Confidence 5999999999999999876421 111222334444455554 3578999999963321 111111 14789
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS 123 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~ 123 (265)
++++|++++..........++..+..... .....|+++|+||+|+.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 99999887653211223455556655443 11237999999999984
No 116
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.40 E-value=6.6e-13 Score=109.11 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|.+....... .|.........+++..+.+|||||......... .++ .++|+++
T Consensus 31 vG~~~vGKSsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i 97 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL--PAINGIV 97 (198)
T ss_dssp EEETTSSHHHHHHHHSCC----------CCCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG--GGCSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccC----CCCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH--hcCCEEE
Confidence 599999999999999987643222 122223346677889999999999754332211 111 3789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +.. ...++..+.+... ....|+++|+||+|+.
T Consensus 98 ~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 98 FLVDCADHERLLE-SKEELDSLMTDET-IANVPILILGNKIDRP 139 (198)
T ss_dssp EEEETTCGGGHHH-HHHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred EEEECCCHHHHHH-HHHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence 998876532 222 2334444433211 1237999999999995
No 117
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.40 E-value=8.8e-13 Score=108.25 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++..... ...+..+.........+++ ..+.+|||||..+...... .++ ..+|+
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~~d~ 83 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFY--RGADC 83 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGG--TTCSE
T ss_pred ECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHH--hCCcE
Confidence 5999999999999999886421 1112222333334444554 5789999999744322211 111 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~ 123 (265)
+++|++++.......-..++..+...... ....|+++|+||+|+.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 99998776422112223455555554421 1237999999999996
No 118
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.40 E-value=1.3e-12 Score=109.39 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d 77 (265)
||.+|||||||++.+++... ...+.++ +..........++. .+.||||+|........ ..++ +++|
T Consensus 19 vGd~~VGKTsLi~r~~~~~f--~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~-------~~~~--~~a~ 87 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI-------PSYI--RDSA 87 (216)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH-------HHHH--TTCS
T ss_pred ECcCCcCHHHHHHHHHhCCC--CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH-------HHHh--cccc
Confidence 69999999999999997653 2222222 22333334445554 56899999985443221 1111 4889
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE 131 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~ 131 (265)
++++|++++.......-..++..+.+..+++ .|+++|+||+|+...+..+.+
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~ 139 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIE 139 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHH
Confidence 9999999886443334456777777777655 789999999999654444544
No 119
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=6.2e-13 Score=109.82 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....+..+.........+++. .+.+|||||... +......++ ..+|+
T Consensus 32 vG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~--~~~d~ 101 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSYY--RSANA 101 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGGS--TTCSE
T ss_pred ECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHH--hcCCE
Confidence 59999999999999998763 2222222222333345556664 689999999632 111222222 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR 127 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~ 127 (265)
+++|++++.......-..+++.+....... .|+++|+||+|+.....
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~ 148 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERRE 148 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccc
Confidence 999988764221122245666666654333 78999999999954333
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.39 E-value=2.1e-12 Score=104.37 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHh--cC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLL--NK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~--~~ 74 (265)
+|.+|||||||+|+|++... ..+..+++|........ . .+.+|||||+.+....+. .+......++. ..
T Consensus 7 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 81 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred ECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 59999999999999999873 44444555555443333 2 688999999865433322 22223333332 35
Q ss_pred CccEEEEEEecCCcCCCHH------------HHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNL------------DKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~------------d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++++++|.+.+ .+... +..+++.+... ..|+++|+||+|+.
T Consensus 82 ~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 82 NIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKI 135 (190)
T ss_dssp GCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred cCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHhc-----CCceEEEeehHhcc
Confidence 678888885543 22221 12222323221 28999999999985
No 121
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=8.1e-13 Score=119.02 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=59.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC------CCCCccE--EEEeeeCCe--EEEEEeCCCCCCCCCCcH------H-H
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPRPV--MVSRSRAGF--TLNIVDTPGLIEGGYVNY------H-A 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~------~~t~~~~--~~~~~~~g~--~v~iiDTPG~~~~~~~~~------~-~ 63 (265)
+|.+|+|||||+|+|++...+..+... ..|.... .......+. .+++|||||+++.....+ . .
T Consensus 43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i 122 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI 122 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHH
T ss_pred EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHH
Confidence 699999999999999987654332211 1121111 122233454 689999999976422111 1 1
Q ss_pred HHHHHHHH-----------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFL-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l-----------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+....++ ....+|+++|++......+...+..+++.+. . ..|+|+|+||+|+.
T Consensus 123 ~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~--~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 123 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTL 187 (361)
T ss_dssp HHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSS
T ss_pred HHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----c--CCCEEEEEECCCCC
Confidence 11111222 1234578888854323457888777766553 2 27999999999985
No 122
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=4.3e-13 Score=109.18 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=70.7
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc-CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+|++....... ...+.+...........+..+.+|||||.. ........++ ..+|++
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~--~~~d~~ 99 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE-------RYRTITTAYY--RGAMGF 99 (191)
T ss_dssp EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH-------HCHHHHHHHH--TTCCEE
T ss_pred ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH-------HHHHHHHHHH--ccCCEE
Confidence 599999999999999987632111 111122222222333356789999999952 1122222222 478999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
++|++++..........+++.+....... .|+++|+||+|+...
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEE 143 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 99988775322223345667776654333 799999999998543
No 123
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.38 E-value=3.5e-12 Score=104.37 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|.+++............+......... .....+.+|||||..............++ ++|++
T Consensus 26 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~------~~~~~ 99 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR------GTGAL 99 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH------TCSEE
T ss_pred ECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc------cCCEE
Confidence 599999999999999986432211111122222222221 23468999999997653322100011222 78999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++++.. +......+.+.+.+........|+++|+||+|+.
T Consensus 100 i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 100 IYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp EEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 999888753 3344455555555542111238999999999985
No 124
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.38 E-value=3.9e-12 Score=104.30 Aligned_cols=120 Identities=16% Similarity=0.048 Sum_probs=73.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|.+..... ...+.++.........+++. .+.+|||||..... .... ..++ ..+|+
T Consensus 29 vG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~---~~~~--~~~d~ 99 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---GWLR---DHCL--QTGDA 99 (195)
T ss_dssp ECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---HHHH---HHHH--HHCSE
T ss_pred ECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---hhhH---HHhh--ccCCE
Confidence 6999999999999998754311 22233444444455566665 56789999984321 1111 1122 26799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY 130 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~ 130 (265)
+++|+++++......-..++..+...... ...|+++|+||+|+......+.
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 150 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSL 150 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCH
Confidence 99998887532112233455555554321 1379999999999964444443
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.38 E-value=6.8e-14 Score=114.83 Aligned_cols=113 Identities=20% Similarity=0.146 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++..... ...+..+.........+++ ..+.+|||||..+.......+ + ..+|+
T Consensus 39 vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~d~ 108 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY---Y------RGAHG 108 (199)
T ss_dssp ECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC-----------CCCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH---h------hcCCE
Confidence 6999999999999999876422 2122233444445566666 468999999975543322211 1 47899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
+++|++++.......-..++..+...... ..|+++|+||+|+.+.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence 99997766422112223455555544332 3799999999998543
No 126
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.38 E-value=4.8e-12 Score=101.35 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++..... ..+++.........+++. .+.+|||||... . ..++ ++|+
T Consensus 13 vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---~~~~------~~d~ 75 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---KFSG------WADA 75 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H---HHHH------HCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h---HHHH------hCCE
Confidence 6999999999999999876422 223333333445556664 578999999743 1 1222 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~ 123 (265)
+++|++++.......-..+++.+...... ....|+++|+||+|+.
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99998877532112223344445444321 1237999999999984
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.38 E-value=7.3e-13 Score=109.49 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++.........+++ ..+.+|||||..+...... .+ ...+|+
T Consensus 15 ~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~~~~d~ 83 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LS--YRGADI 83 (212)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GG--GTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hh--ccCCCE
Confidence 59999999999999998763 23333444444444455555 4789999999865432211 11 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence 99998876532 22222356666766543 28999999999984
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.38 E-value=3.4e-13 Score=111.33 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++... .....+++..........++.. +.+|||||..+..... .. ....+|+
T Consensus 36 vG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~--~~~~~d~ 104 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR-------PL--SYPQTDV 104 (204)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG-------GG--GCTTCSE
T ss_pred ECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHH-------HH--HhccCCE
Confidence 59999999999999997653 3333444444444445556654 4599999984332111 11 1147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhc
Confidence 99998877532 22222356666666542 28999999999985
No 129
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=2.3e-12 Score=104.55 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++..... ...+..+.........+++ ..+.+|||||..+..... ..++ ..+|+
T Consensus 21 ~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ 90 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT-------PSYY--RGAQG 90 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH-------HHHH--TTCCE
T ss_pred ECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-------HHHh--ccCCE
Confidence 5999999999999999876421 1111112222223344444 578999999975433221 1112 37899
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++..........++..+..... ....|+++|+||+|+.
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc
Confidence 9999887642211222344455544322 1237899999999994
No 130
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.38 E-value=3.6e-12 Score=114.59 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEE
Q 024586 42 GFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI 115 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~------~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~iv 115 (265)
+..+++|||||+.+... ..+.....+..++ .++|++++|+....... ....+++.+...... .+++++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~--~~~~~~~l~~~~~~~--~~~~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDL--ATSDAIKISREVDPS--GDRTFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCG--GGCHHHHHHHHSCTT--CTTEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCc--CCHHHHHHHHHhccc--CCCEEE
Confidence 34689999999987422 1122233333343 37898888854332221 112233333333222 278999
Q ss_pred EEeCccCCCCCC
Q 024586 116 VLTHAQLSLPDR 127 (265)
Q Consensus 116 V~tk~D~~~~~~ 127 (265)
|+||+|+.+...
T Consensus 209 V~nK~Dl~~~~~ 220 (360)
T 3t34_A 209 VLTKIDLMDKGT 220 (360)
T ss_dssp EEECGGGCCTTC
T ss_pred EEeCCccCCCcc
Confidence 999999975443
No 131
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.36 E-value=2.9e-13 Score=108.67 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+...... .++ ..+|+
T Consensus 14 ~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~ 82 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LSY--RGADV 82 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG-------GGG--TTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc--cCCCE
Confidence 59999999999999998763 222222322222222333443 456999999754332211 111 47899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+..... ..|+++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR 125 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence 99998876422 22222346666766543 38999999999984
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.36 E-value=4.7e-13 Score=111.55 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|||||||+|+++... ........+.+...........+..+.+|||||..........+ + ..+|++
T Consensus 21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~~~~ 91 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY---Y------IQAQCA 91 (221)
T ss_dssp EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH---H------TTCCEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH---H------hcCCEE
Confidence 5999999999999966433 21222222223333323333344678999999975443332211 1 378999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++++.......-..++..+.+... ..|+++|+||+|+..
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 999887753222223456666666543 279999999999853
No 133
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.36 E-value=9.7e-13 Score=106.44 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....++..........+++ ..+.+|||||........ .. ....+|+
T Consensus 13 ~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~--~~~~~~~ 81 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR-------PL--SYPDSDA 81 (184)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTG-------GG--GCTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhH-------Hh--hcCCCcE
Confidence 59999999999999998763 22222222222222334444 578999999974322111 11 1247899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+.+... ..|+++|+||+|+.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 124 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence 99998877522 22222345566665432 27999999999985
No 134
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.35 E-value=4e-12 Score=110.66 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCcc-EEEEEEecCCcCCCHHHH-HHHHHHHHhcCcCcCCcE
Q 024586 42 GFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTID-VLLYVDRLDVYRVDNLDK-QITRAITDNFGEQIWKRA 113 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d-~iL~V~~~d~~r~~~~d~-~~l~~l~~~~g~~~~~~~ 113 (265)
+..+.+|||||+.+... .. ......+..++. .+| ++|+|++.+. .+...+. .+++.+.. ...|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANS-DLANSDALKIAKEVDP-----QGQRT 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT--STTEEEEEEEESSS-CGGGCHHHHHHHHHCT-----TCSSE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc--CCCeEEEEEecCCc-chhhhHHHHHHHHhCC-----CCCeE
Confidence 36799999999975321 11 133334444443 445 4557766543 2444443 34444432 13799
Q ss_pred EEEEeCccCCCC
Q 024586 114 LIVLTHAQLSLP 125 (265)
Q Consensus 114 ivV~tk~D~~~~ 125 (265)
++|+||+|+.+.
T Consensus 196 i~V~NK~Dl~~~ 207 (299)
T 2aka_B 196 IGVITKLDLMDE 207 (299)
T ss_dssp EEEEECGGGSCT
T ss_pred EEEEEccccCCC
Confidence 999999999643
No 135
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=1.6e-12 Score=123.07 Aligned_cols=116 Identities=15% Similarity=0.259 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcc--cccCCCCCCCccEEEEeee----------------------------CC--------
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSR----------------------------AG-------- 42 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~--~~~~~~~~t~~~~~~~~~~----------------------------~g-------- 42 (265)
+|.+|+|||||+|+|+|.... .++..+.++.......... ++
T Consensus 71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~ 150 (550)
T 2qpt_A 71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPN 150 (550)
T ss_dssp EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCC
T ss_pred ECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccc
Confidence 589999999999999999864 3444443322111111000 00
Q ss_pred ---eEEEEEeCCCCCCCCCC--cH--HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEE
Q 024586 43 ---FTLNIVDTPGLIEGGYV--NY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI 115 (265)
Q Consensus 43 ---~~v~iiDTPG~~~~~~~--~~--~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~iv 115 (265)
..+.+|||||+.+.... .+ .+...+..++ ..+|++|+|++.+...+...+..+++.+... ..++++
T Consensus 151 ~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~pvil 223 (550)
T 2qpt_A 151 QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH-----EDKIRV 223 (550)
T ss_dssp HHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----GGGEEE
T ss_pred cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----CCCEEE
Confidence 35899999999763211 10 0122222232 2679999997776434667777777766543 278999
Q ss_pred EEeCccCC
Q 024586 116 VLTHAQLS 123 (265)
Q Consensus 116 V~tk~D~~ 123 (265)
|+||+|+.
T Consensus 224 VlNK~Dl~ 231 (550)
T 2qpt_A 224 VLNKADMV 231 (550)
T ss_dssp EEECGGGS
T ss_pred EEECCCcc
Confidence 99999985
No 136
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.34 E-value=1.2e-12 Score=127.16 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEE--------Eee--------------------eCC----------
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV--------SRS--------------------RAG---------- 42 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~--------~~~--------------------~~g---------- 42 (265)
+|.+|+|||||+|+|+|.+++.++..+.+ ..+... ... ..+
T Consensus 75 vG~~naGKSSLlNaLlg~~~~~v~~~p~T-~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~ 153 (695)
T 2j69_A 75 LGDMKRGKSTFLNALIGENLLPSDVNPCT-AVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEK 153 (695)
T ss_dssp ECCTTSCHHHHHHHHHTSSCSCCCCCTTT-CCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCCCCCc-cceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhcc
Confidence 59999999999999999987666654433 211100 000 011
Q ss_pred --------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHH-HH
Q 024586 43 --------------------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITR-AI 101 (265)
Q Consensus 43 --------------------~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~-~l 101 (265)
..+.+|||||+.+........ ..++ ..+|++|||++.+. .++..+...+. .+
T Consensus 154 ~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~----~~~i--~~aD~vL~Vvda~~-~~s~~e~~~l~~~l 226 (695)
T 2j69_A 154 KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELS----LGYV--NNCHAILFVMRASQ-PCTLGERRYLENYI 226 (695)
T ss_dssp CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHH----THHH--HSSSEEEEEEETTS-TTCHHHHHHHHHHT
T ss_pred ccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHH----HHHH--HhCCEEEEEEeCCC-ccchhHHHHHHHHH
Confidence 358999999986532222222 2222 37899999977653 36666665553 22
Q ss_pred HHhcCcCcCCcEEEEEeCccCCC
Q 024586 102 TDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 102 ~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
... ..|+++|+||+|+..
T Consensus 227 ~~~-----~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 227 KGR-----GLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTS-----CCCEEEEEECGGGGG
T ss_pred Hhh-----CCCEEEEEECccccc
Confidence 221 268999999999853
No 137
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.34 E-value=4.3e-12 Score=118.63 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|||||||+|+|++... +... .|...........+..+.+|||||..+..... ..++ ..+|++|
T Consensus 328 vG~~nvGKSsLl~~l~~~~~--~~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~--~~ad~~i 394 (497)
T 3lvq_E 328 LGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW-------RHYY--TGTQGLI 394 (497)
T ss_dssp ECSTTSSHHHHHHHHHHSSC--CCCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGGG-------GGGG--TTCCEEE
T ss_pred EcCCCCCHHHHHHHHhcCCC--CCcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHHH-------HHHh--ccCCEEE
Confidence 69999999999999999873 2222 35556666677888999999999974432211 1111 4789999
Q ss_pred EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++++... +.... .++..+.+... ....|+++|+||+|+.
T Consensus 395 ~V~D~~~~~s~~~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 395 FVVDCADRDRIDEAR-QELHRIINDRE-MRDAIILIFANKQDLP 436 (497)
T ss_dssp EEEETTCGGGHHHHH-HHHHHHHTSGG-GTTCEEEEEEECCSSS
T ss_pred EEEECcchhHHHHHH-HHHHHHhhhhh-cCCCcEEEEEECCCCC
Confidence 998877532 32222 23333322211 1138999999999994
No 138
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.33 E-value=1.5e-12 Score=108.04 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC------------CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVNYHAIQLIK 68 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~------------g~~v~iiDTPG~~~~~~~~~~~~~~i~ 68 (265)
+|.+|||||||+|+|++.... ....+..+.........++ ...+.+|||||.. .+.....
T Consensus 31 vG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~ 102 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------RFRSLTT 102 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------HHHHHHH
T ss_pred ECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------hHHhHHH
Confidence 599999999999999987631 1111111111112223333 4578999999952 2222233
Q ss_pred HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCCC
Q 024586 69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSL 124 (265)
Q Consensus 69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~~ 124 (265)
.++ ..+|++++|++++... ....+...+....... ...|+++|+||+|+..
T Consensus 103 ~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 103 AFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp HHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred HHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 333 4789999998776421 1112222233222211 2378999999999853
No 139
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.33 E-value=3.7e-12 Score=114.26 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=44.8
Q ss_pred CeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHH-HHHHHHHHhcCcCcCCcEE
Q 024586 42 GFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK-QITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~-~~l~~l~~~~g~~~~~~~i 114 (265)
+..+++|||||+..... .. +.+.+.+..++. ...+++|+|++.+. .+...+. .+++.+.. . ..+++
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~---~--~~~~i 201 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKVAKEVDP---Q--GQRTI 201 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHHHHHHHHHCT---T--CTTEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHHHHHHHHhCc---C--CCceE
Confidence 46799999999976321 11 233344444443 35567777755442 3444443 24443332 2 27999
Q ss_pred EEEeCccCCC
Q 024586 115 IVLTHAQLSL 124 (265)
Q Consensus 115 vV~tk~D~~~ 124 (265)
+|+||+|+.+
T Consensus 202 ~V~NK~Dl~~ 211 (353)
T 2x2e_A 202 GVITKLDLMD 211 (353)
T ss_dssp EEEECGGGSC
T ss_pred EEeccccccC
Confidence 9999999964
No 140
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=1.4e-11 Score=102.79 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
||.+|||||||+|+++|......+..++++.........++|.. +.++||+|... . ...+... ....+|+
T Consensus 43 vG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~~-~~~~a~~ 114 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHDH-CMQVGDA 114 (211)
T ss_dssp ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHHC-CCCCCSE
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHHH-HHhhCCE
Confidence 69999999999999998654334443444444444556677764 57899998631 1 1122211 2246899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++++.. +.. ...+...+.+... ....|+++|+||+|+..
T Consensus 115 ~ilVydvt~~~sf~~-~~~~~~~l~~~~~-~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 115 YLIVYSITDRASFEK-ASELRIQLRRARQ-TEDIPIILVGNKSDLVR 159 (211)
T ss_dssp EEEEEETTCHHHHHH-HHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHH-HHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence 99998887532 222 2234444544321 11379999999999953
No 141
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.33 E-value=2.3e-12 Score=107.27 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....+++..........++ ..+.+|||||........ ..+ ...+|+
T Consensus 33 vG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~--~~~~d~ 101 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR-------PLC--YSDSDA 101 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTG-------GGG--CTTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHH-------HHH--cCCCeE
Confidence 69999999999999998763 23333333332233334444 568999999974332211 111 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+..... ..|+++|+||+|+.
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 99998887532 22223466777776543 27999999999985
No 142
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=4.6e-12 Score=105.08 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+|+|||||+|+|++....... .+..+.. ...+.+..+.+|||||..... ......++.. ...+|+++
T Consensus 18 ~G~~g~GKTsl~~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~--~~~~~~~i 87 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDSVRPTV----VSQEPLS-AADYDGSGVTLVDFPGHVKLR---YKLSDYLKTR--AKFVKGLI 87 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCBC----CCSSCEE-ETTGGGSSCEEEECCCCGGGT---HHHHHHHHHH--GGGEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCee----eecCceE-EEEeeCceEEEEECCCcHHHH---HHHHHHHHhc--cccCCEEE
Confidence 599999999999999987632110 0111111 122356678999999985432 1121222211 12479999
Q ss_pred EEEecC-Cc-CCCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCCC
Q 024586 81 YVDRLD-VY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 81 ~V~~~d-~~-r~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~~ 124 (265)
+|++.. .. .+.... .++..+..... .....|+++|+||+|+..
T Consensus 88 ~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp EEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 998876 32 244333 34444333211 112388999999999954
No 143
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.32 E-value=1.8e-12 Score=107.31 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|+|++... .....++..........+++ ..+.+|||||........ ..+ ...+|+
T Consensus 34 vG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~--~~~~d~ 102 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR-------PLS--YPDSDA 102 (205)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTG-------GGG--CTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC--CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHH-------Hhh--ccCCCE
Confidence 69999999999999998763 22222222222222334444 578999999974322111 111 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+.+... ..|+++|+||+|+.
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 145 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence 99998877522 22222456666666543 27999999999985
No 144
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.32 E-value=2.8e-12 Score=103.98 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEE--e-eeC--CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVS--R-SRA--GFTLNIVDTPGLIEGGYVNYHAIQLIK 68 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~--~-~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~ 68 (265)
+|.+|||||||+|.+.|......... ...|....... . ..+ ...+.+|||||..+... ...
T Consensus 20 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~ 92 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA-------SRK 92 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH-------HHH
T ss_pred ECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH-------HHH
Confidence 69999999999999887643211100 00011011111 1 222 34689999999754321 111
Q ss_pred HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHH----HHhcCcCcCCcEEEEEeCccCC
Q 024586 69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAI----TDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l----~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++ ..+|++++|++++..+ ...+...++.+ ..........|+++|+||+|+.
T Consensus 93 ~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 93 LIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 222 4789999998877322 22223333333 2221112348999999999994
No 145
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.32 E-value=9.2e-12 Score=101.05 Aligned_cols=105 Identities=17% Similarity=0.027 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|++++.... .... .|.........+++. .+.+|||||..... .++ .+|+
T Consensus 26 vG~~~vGKSsL~~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~------~~~~ 88 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGTYV--QEES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FAA------WVDA 88 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSSCC--CCCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HHH------HCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCcC-CCcceEEEEEEECCEEEEEEEEECCCChhhh--------eec------CCCE
Confidence 699999999999999987632 2122 233333445667775 55779999974321 222 5799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++.......-..++..+..... ....|+++|+||+|+.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 9999888753211222346666655432 1237999999999984
No 146
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.30 E-value=1e-11 Score=101.54 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCC-CCCcHHHHHHHHHHHhcCCcc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEG-GYVNYHAIQLIKRFLLNKTID 77 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~-~~~~~~~~~~i~~~l~~~~~d 77 (265)
+|.+|||||||+|.+.|......+...+++.........++|.. +.++||+|.... ......+ . ..+|
T Consensus 12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~---~------~~~~ 82 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC---M------QVGD 82 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGH---H------HHCS
T ss_pred ECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhh---c------ccCC
Confidence 69999999999999997543233333333444444556677764 578999997431 1111111 1 2568
Q ss_pred EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++++|+++++.........++..+.+.... ...|+++|.||+|+..
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR 128 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence 999998887532112223455555554221 1278999999999853
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.30 E-value=2.2e-11 Score=113.66 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcc------cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~------~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (265)
+|..++|||||+|+|++.... ......+.|..........++..+.+|||||.. ++...+...+ .
T Consensus 25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~~~~~~--~ 95 (482)
T 1wb1_A 25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVSAA--D 95 (482)
T ss_dssp EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHHHT--T
T ss_pred ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHHHHHHH--h
Confidence 589999999999999997611 112222344443334456688999999999972 3333443333 4
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+|++++|++.+. ....+..+.+..+... + .|.++|+||+|+.
T Consensus 96 ~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 96 IIDLALIVVDAKE-GPKTQTGEHMLILDHF-N----IPIIVVITKSDNA 138 (482)
T ss_dssp SCCEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCBCEEEECTTSS
T ss_pred hCCEEEEEEecCC-CccHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 7899999977654 3556666666655543 2 6779999999995
No 148
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=4.6e-12 Score=115.40 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---------------------eC---CeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~v~iiDTPG~~~~ 56 (265)
+|.+|||||||+|+|+|.. +.+++++++|..+...... ++ +.++.+|||||+..+
T Consensus 6 vG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~ 84 (397)
T 1wxq_A 6 VGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG 84 (397)
T ss_dssp EECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred ECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence 6999999999999999988 5677777777766554321 12 257899999999653
Q ss_pred CCCcHHHHHHHHHHH-hcCCccEEEEEEecCC
Q 024586 57 GYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDV 87 (265)
Q Consensus 57 ~~~~~~~~~~i~~~l-~~~~~d~iL~V~~~d~ 87 (265)
....+. ....++ ..+.+|++++|++...
T Consensus 85 a~~~~~---l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 85 AHEGRG---LGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTC
T ss_pred hhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence 222111 112232 2258999999987754
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.93 E-value=3.5e-13 Score=110.84 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|+|++... .....+++..........++. .+.+|||||..+..... ..++ ..+|+
T Consensus 36 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~~d~ 104 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY--PQTDV 104 (204)
Confidence 69999999999999998653 222233333333333344444 45699999975432111 1111 36799
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~ 147 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
Confidence 99997766432 33333355666655433 37999999999995
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.27 E-value=3.8e-11 Score=110.74 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|.+++|||||+|+|++........ ..+.|...........+..+.+|||
T Consensus 23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDT 102 (439)
T 3j2k_7 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA 102 (439)
T ss_pred EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEEC
Confidence 5999999999999997653211110 1234444445556678889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC------HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~------~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||.. ++...+...+ ..+|++|+|++.+..-+. .+..+.+..+... +. +++++|+||+|+.
T Consensus 103 PGh~-------~f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v---~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 103 PGHK-------SFVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GV---KHLIVLINKMDDP 168 (439)
T ss_pred CChH-------HHHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CC---CeEEEEeecCCCc
Confidence 9973 2333333332 378999999776642121 3444454444432 21 3499999999984
No 151
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.27 E-value=2.4e-11 Score=110.82 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC---------CccEE----------EEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---------PRPVM----------VSRSRAGFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t---------~~~~~----------~~~~~~g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|.+|+|||||+|+|++........+...+ ..... .........+.+|||||..
T Consensus 14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~------- 86 (403)
T 3sjy_A 14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE------- 86 (403)
T ss_dssp ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG-------
T ss_pred ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH-------
Confidence 599999999999999995421111100000 00000 0001122689999999963
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.+...+...+ ..+|++++|++.+......+..+.+..+... +. +|+++|+||+|+.
T Consensus 87 ~~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~ 142 (403)
T 3sjy_A 87 VLMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV 142 (403)
T ss_dssp GGHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred HHHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence 2223333333 4789999997776532255666666655544 22 5899999999985
No 152
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.27 E-value=2.6e-11 Score=118.02 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=74.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEE-------------------------------------------
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS------------------------------------------- 37 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~------------------------------------------- 37 (265)
+|.+++|||||+|+|+|....+.+.. .+|..+....
T Consensus 57 vG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~i 135 (772)
T 3zvr_A 57 VGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 135 (772)
T ss_dssp EECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCC
T ss_pred ECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcc
Confidence 59999999999999999876444432 2343322211
Q ss_pred --------ee-eCCeEEEEEeCCCCCCCCC--Cc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHH-HHHHHH
Q 024586 38 --------RS-RAGFTLNIVDTPGLIEGGY--VN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK-QITRAI 101 (265)
Q Consensus 38 --------~~-~~g~~v~iiDTPG~~~~~~--~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~-~~l~~l 101 (265)
.. .+..+++++||||+..... .. +...+.+..++. ..+|++|+|++.+. .+...+. .+++.+
T Consensus 136 s~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~l~ll~~L 213 (772)
T 3zvr_A 136 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKIAKEV 213 (772)
T ss_dssp CSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHHHHHHHHH
T ss_pred cccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHHHHHHHHH
Confidence 10 1233578999999987321 11 234444555554 67899999965543 2444554 565555
Q ss_pred HHhcCcCcCCcEEEEEeCccCCCCC
Q 024586 102 TDNFGEQIWKRALIVLTHAQLSLPD 126 (265)
Q Consensus 102 ~~~~g~~~~~~~ivV~tk~D~~~~~ 126 (265)
... .+|+++|+||+|+.+..
T Consensus 214 ~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 214 DPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp CTT-----CSSEEEEEECTTSSCTT
T ss_pred Hhc-----CCCEEEEEeCcccCCcc
Confidence 433 28999999999997543
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.25 E-value=2.3e-11 Score=113.59 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|.+|+|||||+|+|++..... .....+.|...........+..+.+|||
T Consensus 39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDT 118 (483)
T 3p26_A 39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA 118 (483)
T ss_dssp ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEEC
Confidence 5999999999999998652110 0111244555555666778889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
||..+ +...+...+ ..+|++|+|++.+... +.....+.+..+.. .+. +++|+|+||+|+.+
T Consensus 119 PG~~~-------f~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 119 PGHRD-------FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNVD 185 (483)
T ss_dssp CCCGG-------GHHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEEEEECGGGGT
T ss_pred CCcHH-------HHHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEEEEECcCccc
Confidence 99843 223333333 4789999998776421 22344444444433 222 57999999999953
No 154
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.24 E-value=4.9e-11 Score=97.68 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|.|+|....... .+..+.........++|. .+.+|||||.......... +. ..+|+
T Consensus 11 vG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~-------~~--~~~~~ 80 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA-------YY--RGAVG 80 (199)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHH-------HH--TTCSE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHH-------HH--hcCCE
Confidence 699999999999999997642221 122233444556667775 4578999997543222211 11 36799
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|+++........-..++..+...... ..++++|+||+|+..
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH 124 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence 99997766421111122344555443222 378999999999854
No 155
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.23 E-value=8.7e-12 Score=100.96 Aligned_cols=111 Identities=18% Similarity=0.114 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeee-----CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~-----~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~ 74 (265)
+|.+|||||||+|.|.+......+...++.. ......... ....+.+|||||..+..... ..++ .
T Consensus 8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~ 78 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------PHFM--T 78 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS-------HHHH--H
T ss_pred ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh-------HHHc--c
Confidence 6999999999999999963222222222211 111112221 34578999999973221111 1122 2
Q ss_pred CccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+.|++++|++++.. +....-..++..+..... ..|+++|+||+|+.
T Consensus 79 ~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 56899999887652 111122345555544322 27899999999984
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.23 E-value=1.5e-11 Score=112.19 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCC---C----ccc---ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGE---K----AVT---VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI 64 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~---~----~~~---~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~ 64 (265)
+|.+|+|||||+|+|++. . .+. ..+ ..+.|...........+..+.+|||||..+. .
T Consensus 17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-------~ 89 (405)
T 2c78_A 17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-------I 89 (405)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-------H
T ss_pred EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-------H
Confidence 599999999999999973 1 000 000 1234444444555667789999999998532 2
Q ss_pred HHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 65 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 65 ~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
..+...+ ..+|++|+|++.+. .......+++..+... + .| +++|+||+|+.
T Consensus 90 ~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~ 141 (405)
T 2c78_A 90 KNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV 141 (405)
T ss_dssp HHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred HHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence 2233222 47899999977664 3456666676666543 2 45 89999999985
No 157
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.23 E-value=8.7e-12 Score=109.72 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=71.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEE--EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL--NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|+|||||+|.+++... .....+++..........++..+ .+|||||......... .+ ...+|+
T Consensus 161 ~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--~~~~d~ 229 (332)
T 2wkq_A 161 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------LS--YPQTDV 229 (332)
T ss_dssp EESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG-------GG--CTTCSE
T ss_pred ECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH-------Hh--ccCCCE
Confidence 59999999999999997653 33334444444444556666655 5999999754322111 11 147899
Q ss_pred EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+++|++++... +......+++.+....+ ..|+++|+||+|+.
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence 99998876522 22222245666666543 38999999999984
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.20 E-value=1e-10 Score=107.76 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc----------CCC----------------------CCCCccEEEEeeeCCeEEEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS----------TFQ----------------------SEGPRPVMVSRSRAGFTLNIV 48 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~g~~v~ii 48 (265)
+|.+|+|||||+|+|++....... ... +.|...........+..+.+|
T Consensus 30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii 109 (434)
T 1zun_B 30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA 109 (434)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence 599999999999999875421111 011 123333333455577899999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||||..+ +...+...+ ..+|++|+|++.+. .......+.+..+... +. +++++|+||+|+.
T Consensus 110 DtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~-~~---~~iIvviNK~Dl~ 170 (434)
T 1zun_B 110 DTPGHEQ-------YTRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASLL-GI---KHIVVAINKMDLN 170 (434)
T ss_dssp ECCCSGG-------GHHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHHT-TC---CEEEEEEECTTTT
T ss_pred ECCChHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEcCcCC
Confidence 9999742 122222222 48899999987764 3455666666555433 21 4799999999985
No 159
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.20 E-value=8.4e-11 Score=96.72 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh-cCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL-NKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~-~~~ 75 (265)
+|.+|+|||||+|+|+|.. ...+++..++|.... ...+++ .+.++||||+.+..... +.+...+..++. ...
T Consensus 32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS 108 (210)
T ss_dssp EECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhc
Confidence 6999999999999999976 223343344443322 222333 57799999986532111 122233333432 246
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|.+++|+++.. ..+..+.++.+.+... ..++++|.||+|+.
T Consensus 109 ~~~~~~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 109 LQGLVVLMDIRH-PLKDLDQQMIEWAVDS-----NIAVLVLLTKADKL 150 (210)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred ccEEEEEEECCC-CCchhHHHHHHHHHHc-----CCCeEEEEecccCC
Confidence 899999977764 2444444555544432 27889999999974
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.19 E-value=4.5e-11 Score=112.64 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|.+|+|||||+|+|++...+. +.+ ..+.|.........+.+..+++|||||+.+..
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~-- 96 (528)
T 3tr5_A 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFT-- 96 (528)
T ss_dssp EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCC--
T ss_pred ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHH--
Confidence 5899999999999997321110 111 12345555566777889999999999986543
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.. ..+++ ..+|++|+|++... .....+..++..+.... .|+++|+||+|+.
T Consensus 97 -~~----~~~~l--~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~-----iPiivviNK~Dl~ 147 (528)
T 3tr5_A 97 -ED----TYRTL--TAVDSALMVIDAAK-GVEPRTIKLMEVCRLRH-----TPIMTFINKMDRD 147 (528)
T ss_dssp -HH----HHHGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHHTTT-----CCEEEEEECTTSC
T ss_pred -HH----HHHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence 22 22222 37899999977654 36677777777665542 7999999999984
No 161
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.18 E-value=1.9e-10 Score=103.76 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+++|||||+|+|+. .+.|...........+..+.+|||||..+. .......+ ..+|+++
T Consensus 27 iG~~d~GKSTL~~~L~~---------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~aD~ai 88 (370)
T 2elf_A 27 IGTEKSGRTSLAANLGK---------KGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NISDIAV 88 (370)
T ss_dssp EESTTSSHHHHHHTTSE---------EEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTCSEEE
T ss_pred ECCCCCCHHHHHHHHHh---------CCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHCCEEE
Confidence 58999999999999991 123444445566777889999999998542 12222222 3789999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcE-EEEEe-CccC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLT-HAQL 122 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~-ivV~t-k~D~ 122 (265)
+|++ +. ....+..+.+..+... + .+. ++|+| |+|+
T Consensus 89 lVvd-~~-g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 89 LCIP-PQ-GLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp EEEC-TT-CCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred EEEc-CC-CCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 9976 43 3556666666655543 2 455 89999 9998
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.18 E-value=2.8e-10 Score=103.99 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc--CCCCCCCccEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSR---------------A--------GFTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~v~iiDTPG~~~ 55 (265)
+|..++|||||+|+|+|....... ...+.|.........+ . ...+.+|||||..
T Consensus 16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~- 94 (410)
T 1kk1_A 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE- 94 (410)
T ss_dssp ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH-
T ss_pred ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH-
Confidence 599999999999999986432111 1123344332211111 1 1679999999962
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++...+.+.+ ..+|++++|++.+..-...+..+.+..+... +. +++++|+||+|+.
T Consensus 95 ------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~ 150 (410)
T 1kk1_A 95 ------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV 150 (410)
T ss_dssp ------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred ------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence 3333333222 3679999997766421245556666555433 22 6899999999985
No 163
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=3.3e-10 Score=103.62 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=75.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHHHhcCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRFLLNKT 75 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~----~~~~~~~~i~~~l~~~~ 75 (265)
||.+|||||||+|+|.+... .++.++.+|..+......+++ ..+.++||||+.+... .....++.+ ..
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~------er 235 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI------AR 235 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH------TS
T ss_pred ECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH------HH
Confidence 69999999999999999865 455666677777776777665 7899999999975421 122333322 36
Q ss_pred ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++.+|+|++++ ......-....+.+..+...-..+|.++|+||+|+.
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 89999998775 221111122333333321111137899999999984
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.17 E-value=1.8e-10 Score=93.96 Aligned_cols=112 Identities=18% Similarity=0.101 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEE--EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL--NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV 78 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~ 78 (265)
+|.+|||||||+|.|.|...... ..+..+.........++|..+ .++||||........... . ..+++
T Consensus 35 vG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~------~~~~~ 104 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY---Y------RGAVG 104 (191)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHH---H------TTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHH---h------hcCCE
Confidence 69999999999999999764221 112223333445666778655 569999986433222211 1 36789
Q ss_pred EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+++|++.........-..+++.+.+... ...++++|+||+|+..
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 9999776542111111234444444322 2378999999999853
No 165
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.17 E-value=1.9e-10 Score=108.56 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=68.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEE------Eeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMV------SRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIKR 69 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~------~~~~----~g~~v~iiDTPG~~~~~~~~~~~~~~i~~ 69 (265)
+|.+|||||||+|+|++.... ....++. ...... .... .+..+.+|||||..........+ ++
T Consensus 47 vG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~---l~- 120 (535)
T 3dpu_A 47 IGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF---MT- 120 (535)
T ss_dssp ESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH---HH-
T ss_pred ECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH---cc-
Confidence 699999999999999997632 2222221 111111 1112 25789999999975544333322 22
Q ss_pred HHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586 70 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD 129 (265)
Q Consensus 70 ~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~ 129 (265)
.+|++++|+++. .. +....++..+....+. .|+++|+||+|+....+.+
T Consensus 121 -----~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~v~ 169 (535)
T 3dpu_A 121 -----RSSVYMLLLDSR--TD-SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYNIE 169 (535)
T ss_dssp -----SSEEEEEEECGG--GG-GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCCCC
T ss_pred -----CCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCCC---CCEEEEEECCCcccccccC
Confidence 689999996554 33 4456777888776542 7999999999996544433
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.6e-11 Score=114.44 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|.+|+|||||+|+|++........ ..+.|...........+..+.||||
T Consensus 173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDT 252 (611)
T 3izq_1 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA 252 (611)
T ss_dssp ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEEC
T ss_pred EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEEC
Confidence 5999999999999999874322110 1244555555566677889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
||+.+ +...+... ...+|++|+|++.+... ........+..+.. .+. +++|+|+||+|+.+
T Consensus 253 PG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 253 PGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNVD 319 (611)
T ss_dssp CSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEEEEEEECTTTTT
T ss_pred CCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeEEEEEecccccc
Confidence 99843 22222221 25799999997665310 12334444443333 221 56999999999853
No 167
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.14 E-value=2.6e-10 Score=110.78 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-----------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-----------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|.+|+|||||+|+|++..... +.+ ..+.|.........+++..+++|||||+.+.. .+.
T Consensus 16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~---~~~ 92 (693)
T 2xex_A 16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT---VEV 92 (693)
T ss_dssp ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC---HHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH---HHH
Confidence 5999999999999999421100 111 11234444445667788999999999996532 233
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...++ .+|++|+|++... .....+...++.+.+.. .|+++|+||+|+.
T Consensus 93 ~~~l~------~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~-----~p~ilviNK~Dl~ 140 (693)
T 2xex_A 93 ERSLR------VLDGAVTVLDAQS-GVEPQTETVWRQATTYG-----VPRIVFVNKMDKL 140 (693)
T ss_dssp HHHHH------HCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTST
T ss_pred HHHHH------HCCEEEEEECCCC-CCcHHHHHHHHHHHHcC-----CCEEEEEECCCcc
Confidence 33333 5799999977654 46667777777665532 7999999999985
No 168
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.11 E-value=1e-09 Score=100.20 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC--CCCCCCccEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPRPVMVSRSR---------------A--------GFTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~--~~~~t~~~~~~~~~~---------------~--------g~~v~iiDTPG~~~ 55 (265)
+|..++|||||+|+|+|........ ..+.|.........+ . ...+.+|||||.
T Consensus 14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh-- 91 (408)
T 1s0u_A 14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGH-- 91 (408)
T ss_dssp ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSH--
T ss_pred EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCH--
Confidence 5999999999999999864221111 122233322111111 1 167999999996
Q ss_pred CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+.+...+.+ ....+|++++|++.+..-...+..+.+..+.. .+. +|+++|+||+|+.+
T Consensus 92 -----~~f~~~~~~--~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 92 -----ETLMATMLS--GASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp -----HHHHHHHHT--TCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred -----HHHHHHHHH--hHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 233332221 12467999999877642124555555555443 332 58999999999964
No 169
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=106.35 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCC-----CCCCCccEEEEe--eeCC--eEEEEEeCCCCCCCCCC---cHHHHHHH-
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTF-----QSEGPRPVMVSR--SRAG--FTLNIVDTPGLIEGGYV---NYHAIQLI- 67 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~-----~~~t~~~~~~~~--~~~g--~~v~iiDTPG~~~~~~~---~~~~~~~i- 67 (265)
+|++|+|||||+|+|+|......+.. ...|........ ...+ ..++++||||++..... .....+.+
T Consensus 37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~ 116 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID 116 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH
Confidence 69999999999999999764222110 011111111111 1223 26899999999754211 11111111
Q ss_pred ---HHHH-----------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 ---KRFL-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ---~~~l-----------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..++ ..+.+|++||++......++..+..+++.+.. ..++|+|+||+|+.
T Consensus 117 ~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll 180 (418)
T 2qag_C 117 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence 1111 23456788888543323588888778877753 27899999999985
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.09 E-value=5.3e-10 Score=105.36 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
+|.+|+|||||+|+|++..... +.+ ..+.|.........+.+..+++|||||..+..
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~-- 96 (529)
T 2h5e_A 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFS-- 96 (529)
T ss_dssp EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCC--
T ss_pred ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHH--
Confidence 5899999999999999642111 000 11122233344566788999999999996532
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
. .+.+++ ..+|++|+|++... ........+++.+... ..|+++|+||+|+.
T Consensus 97 -~----~~~~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 97 -E----DTYRTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR-----DTPILTFMNKLDRD 147 (529)
T ss_dssp -H----HHHHGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT-----TCCEEEEEECTTSC
T ss_pred -H----HHHHHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc-----CCCEEEEEcCcCCc
Confidence 2 223333 37899999977654 3555555555544332 27899999999984
No 171
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.09 E-value=8.2e-12 Score=117.56 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=73.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL 79 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i 79 (265)
+|.+|+|||||+|+|.+..... ...++.|.+...+.... ++..+++|||||..+...... ++ ...+|++
T Consensus 10 vG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-------~~--~~~aD~v 79 (537)
T 3izy_P 10 MGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-------RG--TQVTDIV 79 (537)
T ss_dssp EESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-------SS--SBSBSSC
T ss_pred ECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-------HH--HccCCEE
Confidence 5999999999999999876432 23344555544444544 567899999999755432211 11 1368999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
++|++.+. .......+.+..+.... .|+++|+||+|+..
T Consensus 80 ILVVDa~d-g~~~qt~e~l~~~~~~~-----vPiIVViNKiDl~~ 118 (537)
T 3izy_P 80 ILVVAADD-GVMKQTVESIQHAKDAH-----VPIVLAINKCDKAE 118 (537)
T ss_dssp EEECBSSS-CCCHHHHHHHHHHHTTT-----CCEEECCBSGGGTT
T ss_pred EEEEECCC-CccHHHHHHHHHHHHcC-----CcEEEEEecccccc
Confidence 99976664 35566666666555432 78999999999853
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.08 E-value=3.4e-10 Score=103.04 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHhCCCc------cc-c--cC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA------VT-V--ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~------~~-~--~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.+++|||||+|+|++... +. . .+ ..+.|...........+..+.+|||||.. ++..
T Consensus 9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~-------~f~~ 81 (397)
T 1d2e_A 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-------DYVK 81 (397)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-------HHHH
T ss_pred EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-------HHHH
Confidence 59999999999999997411 00 0 00 11223222223344567899999999973 2333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
.+...+ ..+|++++|++.+. ....+..+.+..+... + .| +++|+||+|+.
T Consensus 82 ~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 82 NMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQI-G----VEHVVVYVNKADAV 132 (397)
T ss_dssp HHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred HHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCeEEEEEECcccC
Confidence 333332 47899999987764 3455666666555443 2 45 78999999985
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.07 E-value=6.5e-11 Score=109.78 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHhCCCc-cc-----------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-VT-----------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-~~-----------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|.+++|||||+|+|++... .. +.+ ..+.|...........+..+.+|||
T Consensus 13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDt 92 (458)
T 1f60_A 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA 92 (458)
T ss_dssp EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEEC
Confidence 58999999999999986410 00 000 1234444444556677889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCH-------HHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-------LDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~-------~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||..+ +...+...+ ..+|++|+|++.+.. ... +..+.+..+.. .+ .+++++|+||+|+.
T Consensus 93 PGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g-~~~~sf~~~~qt~~~~~~~~~-~~---v~~iivviNK~Dl~ 158 (458)
T 1f60_A 93 PGHRD-------FIKNMITGT--SQADCAILIIAGGVG-EFEAGISKDGQTREHALLAFT-LG---VRQLIVAVNKMDSV 158 (458)
T ss_dssp CCCTT-------HHHHHHHSS--SCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHHH-TT---CCEEEEEEECGGGG
T ss_pred CCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcC-ccccccCcchhHHHHHHHHHH-cC---CCeEEEEEEccccc
Confidence 99742 223333322 488999999766531 111 33333333332 22 14599999999995
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.05 E-value=1.3e-09 Score=103.90 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCccEEEEeee---CC--eEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~--------~~------~~~~t~~~~~~~~~~---~g--~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..|+|||||+|+|++...... .+ ..+.|.........+ +| ..+++|||||..+..
T Consensus 12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~---- 87 (600)
T 2ywe_A 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS---- 87 (600)
T ss_dssp ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH----
T ss_pred ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH----
Confidence 59999999999999986321000 00 011222222222223 23 578999999986421
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+.+.+ ..+|++|+|++.+. .........+...... ..|+++|+||+|+.
T Consensus 88 ---~ev~r~l--~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 88 ---YEVSRAL--AACEGALLLIDASQ-GIEAQTVANFWKAVEQ-----DLVIIPVINKIDLP 138 (600)
T ss_dssp ---HHHHHHH--HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred ---HHHHHHH--HhCCEEEEEEECCC-CccHHHHHHHHHHHHC-----CCCEEEEEeccCcc
Confidence 1223333 27899999977654 3455555554444332 27899999999984
No 175
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=7.2e-12 Score=113.09 Aligned_cols=116 Identities=18% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHhCC-----CcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHHHhcC
Q 024586 1 MGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLNK 74 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~-~~~~~i~~~l~~~ 74 (265)
+|.+|+|||||+|+|++. ....++..+++|........ . ..+.++||||+.+.....+ ...+.+..++...
T Consensus 168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~ 244 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLKIITPKR 244 (369)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSS
T ss_pred EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhccc
Confidence 599999999999999997 45567777788776554432 2 2378999999987642221 1112333344446
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP 125 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~ 125 (265)
.+|.++|+++....-+.. ....+.. ..+. ..++++++||+|....
T Consensus 245 ~i~~~~~~l~~~~~~~~g-~l~~l~~---l~~~--~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 245 EIHPRVYQLNEGQTLFFG-GLARLDY---IKGG--RRSFVCYMANELTVHR 289 (369)
T ss_dssp CCCCEEEEECTTEEEEET-TTEEEEE---EESS--SEEEEEEECTTSCEEE
T ss_pred ccCceEEEEcCCceEEEC-CEEEEEE---ccCC--CceEEEEecCCccccc
Confidence 889999996543211100 1111111 1122 2689999999998543
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.04 E-value=3.8e-11 Score=112.13 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+++|||||+|+|++... ..+...+.|.+...+...+++..+++|||||..+....-. + ....+|+++
T Consensus 10 vGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~-------~--~~~~aD~aI 79 (501)
T 1zo1_I 10 MGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA-------R--GAQATDIVV 79 (501)
T ss_dssp EESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC-------S--SSBSCSSEE
T ss_pred ECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH-------H--HHhhCCEEE
Confidence 58999999999999997543 2222233444444445566788899999999865432211 1 113689999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+|++.+. .......+.+..+.... .|+++|+||+|+.
T Consensus 80 LVVda~~-g~~~qT~e~l~~~~~~~-----vPiIVviNKiDl~ 116 (501)
T 1zo1_I 80 LVVAADD-GVMPQTIEAIQHAKAAQ-----VPVVVAVNKIDKP 116 (501)
T ss_dssp EEEETTT-BSCTTTHHHHHHHHHTT-----CCEEEEEECSSSS
T ss_pred EEeeccc-CccHHHHHHHHHHHhcC-----ceEEEEEEecccc
Confidence 9987765 23344455555444322 7899999999985
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.03 E-value=7.2e-10 Score=105.71 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee------------------eCCeEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------RAGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~------------------~~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|.+|+|||||+|+|++....... ..+.|.+....... +....+++|||||..+......
T Consensus 11 vGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~- 88 (594)
T 1g7s_A 11 LGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRK- 88 (594)
T ss_dssp ECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBC-
T ss_pred ECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHH-
Confidence 699999999999999986431111 11222221111111 1122699999999866532211
Q ss_pred HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
+. ...+|++++|++.+. .+.......++.+... ..|+++|+||+|+.
T Consensus 89 ------r~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 89 ------RG--GALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRI 135 (594)
T ss_dssp ------SS--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred ------HH--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-----CCeEEEEecccccc
Confidence 11 136899999987764 3566677777766543 27999999999985
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.03 E-value=1.3e-09 Score=96.33 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL 80 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL 80 (265)
+|.+||||||+++.+.+.-..........|......... ...++.||||+|..+..... + ....++ +++++++
T Consensus 5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l--~~~~yy--r~a~~~I 77 (331)
T 3r7w_B 5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y--DSERLF--KSVGALV 77 (331)
T ss_dssp ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H--HHHHHH--TTCSEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h--hhhhhc--cCCCEEE
Confidence 699999999999998875321111111122221111221 23678999999986543110 0 001112 4899999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHh--cCcCcCCcEEEEEeCccCC
Q 024586 81 YVDRLDVYRVDNLDKQITRAITDN--FGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 81 ~V~~~d~~r~~~~d~~~l~~l~~~--~g~~~~~~~ivV~tk~D~~ 123 (265)
+|+++++. +...-..+.+.+... ..+ ..|+++|+||+|+.
T Consensus 78 lV~Ditd~-~~~~~~~l~~~l~~~~~~~~--~ipillvgNK~DL~ 119 (331)
T 3r7w_B 78 YVIDSQDE-YINAITNLAMIIEYAYKVNP--SINIEVLIHKVDGL 119 (331)
T ss_dssp EECCCSSC-TTHHHHHHHHHHHHHHHHCT--TCEEEEECCCCCSS
T ss_pred EEEECCch-HHHHHHHHHHHHHHHhhcCC--CCcEEEEEECcccC
Confidence 99777653 444333332223221 122 27899999999995
No 179
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=1.7e-11 Score=110.70 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHhCCC------cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHHHhc
Q 024586 1 MGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLN 73 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~------~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~-~~~~~i~~~l~~ 73 (265)
+|.+|+|||||+|+|+|.. ...++..+++|......... . .+.++||||+.+.....+ ...+.++.++..
T Consensus 166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~ 242 (368)
T 3h2y_A 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD--E-ESSLYDTPGIINHHQMAHYVGKQSLKLITPT 242 (368)
T ss_dssp EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS--S-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCS
T ss_pred ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec--C-CeEEEeCCCcCcHHHHHHHhhHHHHHHhccc
Confidence 5999999999999999863 33456677777665544322 2 278999999987653221 122344555445
Q ss_pred CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 74 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 74 ~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
..++.++|+++.+..-+.. +...+..+ .+. ..++++|+||+|...
T Consensus 243 ~~i~~~~~~l~~~~~~~~g-~l~~~d~l---~~~--~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 243 KEIKPMVFQLNEEQTLFFS-GLARFDYV---SGG--RRAFTCHFSNRLTIH 287 (368)
T ss_dssp SCCCCEEEEECTTEEEEET-TTEEEEEE---ESS--SEEEEEEECTTSCEE
T ss_pred cccCceEEEEcCCCEEEEc-ceEEEEEe---cCC--CceEEEEecCccccc
Confidence 6788888885442111111 11111111 122 278999999999853
No 180
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.02 E-value=1.2e-09 Score=104.23 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCccEEEEeeeC-----CeEEEEEeCCCCCCCCCCcH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEGGYVNY 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~--------~~------~~~~t~~~~~~~~~~~-----g~~v~iiDTPG~~~~~~~~~ 61 (265)
+|..|+|||||+++|++...... .+ ..+.|.........+. +..+++|||||..+..
T Consensus 10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~---- 85 (599)
T 3cb4_D 10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS---- 85 (599)
T ss_dssp ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH----
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH----
Confidence 59999999999999986321110 00 0122332223333333 3678999999985421
Q ss_pred HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..+.+.+. .+|++++|++.+. .........+...... ..|+++|+||+|+.
T Consensus 86 ---~ev~~~l~--~aD~aILVVDa~~-gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 86 ---YEVSRSLA--ACEGALLVVDAGQ-GVEAQTLANCYTAMEM-----DLEVVPVLNKIDLP 136 (599)
T ss_dssp ---HHHHHHHH--HCSEEEEEEETTT-CCCTHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred ---HHHHHHHH--HCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEeeeccCcc
Confidence 22233332 5799999977654 3444444444433332 27899999999995
No 181
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.02 E-value=3.5e-10 Score=104.14 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccc------------------------cC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTV------------------------ST------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~------------------------~~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..|+|||||+|+|++...... .+ ..+.|...........+..+.+|||
T Consensus 12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDt 91 (435)
T 1jny_A 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA 91 (435)
T ss_dssp EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEEC
Confidence 58999999999999986411000 00 1234444444456667889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCC------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
||..+ +...+...+ ..+|++++|++.+...+ ..+..+.+..+.. .+. +++++|+||+|+.+
T Consensus 92 pG~~~-------f~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivviNK~Dl~~ 158 (435)
T 1jny_A 92 PGHRD-------FVKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAVNKMDLTE 158 (435)
T ss_dssp SSSTT-------HHHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEEECGGGSS
T ss_pred CCcHH-------HHHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEEEcccCCC
Confidence 99853 222333332 58899999987765211 2233333333332 221 57899999999953
No 182
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.01 E-value=1.2e-09 Score=98.36 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee---------------------CCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------AGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~v~iiDTPG~~~~~~~ 59 (265)
||.+|+|||||+|+|++.. +.++.++.+|..+......+ .+..+.+|||||+..+...
T Consensus 7 VG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 85 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK 85 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred ECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence 6999999999999999875 35566666666555544433 2457999999999875322
Q ss_pred ----cHHHHHHHHHHHhcCCccEEEEEEecCC
Q 024586 60 ----NYHAIQLIKRFLLNKTIDVLLYVDRLDV 87 (265)
Q Consensus 60 ----~~~~~~~i~~~l~~~~~d~iL~V~~~d~ 87 (265)
...++..++ .+|++++|++...
T Consensus 86 ~~~lg~~fl~~ir------~ad~ii~VvD~~~ 111 (368)
T 2dby_A 86 GEGLGNQFLAHIR------EVAAIAHVLRCFP 111 (368)
T ss_dssp SSCTTHHHHHHHH------TCSEEEEEEECCC
T ss_pred cchHHHHHHHHHH------hCCEEEEEEECCC
Confidence 234455555 7899999987654
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.01 E-value=1.2e-09 Score=106.15 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----c------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV-----T------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~-----~------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|.+|+|||||+|+|+..... . +.+ ..+.|.........+.+..+++|||||..+. ..+.
T Consensus 18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df---~~~~ 94 (691)
T 1dar_A 18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF---TIEV 94 (691)
T ss_dssp EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC---HHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch---HHHH
Confidence 589999999999999932100 0 000 1123333444566678899999999998642 1223
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...++ .+|++|+|++... .........+..+.+. ..|+++|+||+|+.
T Consensus 95 ~~~l~------~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~ 142 (691)
T 1dar_A 95 ERSMR------VLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-----KVPRIAFANKMDKT 142 (691)
T ss_dssp HHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred HHHHH------HCCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 33333 5799999977664 3566666666665543 27999999999985
No 184
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.00 E-value=1.7e-09 Score=93.46 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC-------CCCCCCccEE-EEeeeCC--eEEEEEeCCCCCCCCCC---cHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVM-VSRSRAG--FTLNIVDTPGLIEGGYV---NYHAIQLI 67 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~-------~~~~t~~~~~-~~~~~~g--~~v~iiDTPG~~~~~~~---~~~~~~~i 67 (265)
+|++|+|||||+|+|+|......+. ...++..... +..+..+ ..++++|+||++..... .+...+.+
T Consensus 8 vG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~ 87 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYI 87 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHH
Confidence 6999999999999999864322221 1111111111 1111122 26799999999764221 11122111
Q ss_pred H----H----HHhc--------CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 K----R----FLLN--------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ~----~----~l~~--------~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
. . .++. ..+++.+|+++.....++..|.++++.+.+. .++++|+||+|..
T Consensus 88 ~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 88 NEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 1 1 1111 2358888885544445889998888888753 7899999999985
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.99 E-value=2.8e-11 Score=115.54 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|.+++|||||+|+|++........ ..+.|...........+..++||||
T Consensus 183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDT 262 (592)
T 3mca_A 183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA 262 (592)
T ss_dssp ECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCEE
T ss_pred EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEEC
Confidence 5999999999999997532111100 1234444444555667789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc----CC--CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----RV--DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~----r~--~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||..+.... +...+ ..+|++|+|++.+.. .+ .......+..+... |. +++|+|+||+|+.
T Consensus 263 PGh~~f~~~---~~~~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~iIvviNKiDl~ 328 (592)
T 3mca_A 263 PGHRDFISG---MIAGA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SEIVVSVNKLDLM 328 (592)
T ss_dssp ESSSEEEEE---CCC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CCEEEEEECGGGG
T ss_pred CChHHHHHH---HHHHH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---CeEEEEEeccccc
Confidence 998643211 11111 267999999766532 12 44455555544443 21 3599999999985
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=4e-10 Score=101.16 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCC----C
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY----V 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~----~ 59 (265)
||.+|||||||+|+|++.. +.+++++.+|..+......+.+ ..+.+|||||+.++.. .
T Consensus 8 VG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl 86 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL 86 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence 6999999999999999987 4667777777766554555554 4799999999976421 1
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCC
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDV 87 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~ 87 (265)
...++..++ .+|++++|++...
T Consensus 87 ~~~fl~~ir------~ad~il~VvD~~~ 108 (363)
T 1jal_A 87 GNKFLANIR------ETDAIGHVVRCFE 108 (363)
T ss_dssp TCCHHHHHH------TCSEEEEEEECSC
T ss_pred HHHHHHHHH------hcCeEEEEEecCC
Confidence 112334444 8899999987764
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.96 E-value=5.8e-09 Score=101.45 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=67.1
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-----c------cC------CCCCCCccEEEEeeeCC-------eEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAG-------FTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-----~------~~------~~~~t~~~~~~~~~~~g-------~~v~iiDTPG~~~~ 56 (265)
+|..|+|||||+++|+...... + .+ ..+.|.........+.+ ..++||||||..+.
T Consensus 16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df 95 (704)
T 2rdo_7 16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF 95 (704)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccch
Confidence 6999999999999997532100 0 00 01122222233455555 78999999998653
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 57 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 57 ~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
. . .+.+++ ..+|++|+|++... .........++.+... ..|+++|+||+|+.
T Consensus 96 ~---~----~~~~~l--~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 96 T---I----EVERSM--RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-----KVPRIAFVNKMDRM 147 (704)
T ss_pred H---H----HHHHHH--HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcc
Confidence 2 1 222222 26799999977654 3444555555554432 27899999999984
No 188
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.94 E-value=7.2e-10 Score=102.99 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=58.3
Q ss_pred CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT 50 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT 50 (265)
+|..++|||||+|+|++..... +.+ ..+.|..........++..+.+|||
T Consensus 49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDt 128 (467)
T 1r5b_A 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDA 128 (467)
T ss_dssp EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECCC
T ss_pred EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEEC
Confidence 5899999999999997522100 000 0122333322345567889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC----CC--HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VD--NLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r----~~--~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
||..+. ...+...+ ..+|++|+|++.+... |. ....+.+..+.. .|- +++++|+||+|+.
T Consensus 129 PGh~~f-------~~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~iivviNK~Dl~ 194 (467)
T 1r5b_A 129 PGHKGY-------VTNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHLVVVINKMDEP 194 (467)
T ss_dssp CC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSEEEEEECTTST
T ss_pred CCcHHH-------HHHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEEEEEEECccCC
Confidence 998532 12222222 4789999997766421 11 233334433332 221 3499999999984
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.93 E-value=1.8e-09 Score=94.65 Aligned_cols=117 Identities=22% Similarity=0.305 Sum_probs=56.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC------CCCCc--cEEEEeeeCC--eEEEEEeCCCCCCCCCC---cHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPR--PVMVSRSRAG--FTLNIVDTPGLIEGGYV---NYHAIQLI 67 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~------~~t~~--~~~~~~~~~g--~~v~iiDTPG~~~~~~~---~~~~~~~i 67 (265)
+|++|+|||||+|+|+|...+..+... ..|.. ...+..+..+ ..++++||||+++.... .....+.+
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l 103 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI 103 (301)
T ss_dssp EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH
Confidence 699999999999999997433322210 01111 1111222222 46899999999543110 01111111
Q ss_pred ----HHHH---h--------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 68 ----KRFL---L--------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 68 ----~~~l---~--------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..++ + ...++++||++......++..+.++++.+.. . .++++|+||+|+.
T Consensus 104 ~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~----~--~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 104 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN----K--VNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT----T--SCEEEEECCGGGS
T ss_pred HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh----c--CCEEEEEEeCCCC
Confidence 1221 1 1235677877554333477777655554432 1 6899999999984
No 190
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=97.53 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHhCCCccccc--C-CCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCC---cHHH----HHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVS--T-FQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYV---NYHA----IQLIK 68 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~--~-~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~---~~~~----~~~i~ 68 (265)
+|++|+|||||+|+|+|....... . .+..+.....+.....+ ..++++||||++..... ...+ ...+.
T Consensus 48 vG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~ 127 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE 127 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHH
Confidence 699999999999999998532111 1 11111111112222222 26899999999763211 0111 11111
Q ss_pred HHHh-------------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 69 RFLL-------------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 69 ~~l~-------------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++. ...+|+++|++.-....++..|..+++.|.. ..++|+|+||+|..
T Consensus 128 ~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGS
T ss_pred HHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhcc
Confidence 2211 1124555554322223478888888877752 27999999999985
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.89 E-value=3.7e-09 Score=104.71 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeC----------------CeEEEEEe
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------------GFTLNIVD 49 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------g~~v~iiD 49 (265)
+|..|+|||||+|+|++......+. ..+.|.........+. +..+++||
T Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD 104 (842)
T 1n0u_A 25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID 104 (842)
T ss_dssp ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence 5999999999999999753211110 0112222222222332 67899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 50 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
|||..+.. .+....++ .+|++|+|++... .....+...+..+... ..|+++|+||+|+.
T Consensus 105 TPG~~df~---~~~~~~l~------~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 105 SPGHVDFS---SEVTAALR------VTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCSSC---HHHHHHHH------TCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHHHH
T ss_pred CcCchhhH---HHHHHHHH------hCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCeEEEEECCCcc
Confidence 99997643 23333333 7899999977664 3555665555544432 27899999999984
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.86 E-value=5.6e-09 Score=105.09 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=66.3
Q ss_pred CCCCCCCHHHHHHHHhCCCc------cc---cc------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA------VT---VS------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ 65 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~------~~---~~------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~ 65 (265)
+|.+++|||||+|+|++... +. .. ...+.|...........+..+.+|||||.. ++..
T Consensus 302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe-------dF~~ 374 (1289)
T 3avx_A 302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA-------DYVK 374 (1289)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH-------HHHH
T ss_pred EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH-------HHHH
Confidence 58999999999999997410 00 00 011223222223344567899999999973 2333
Q ss_pred HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
.+...+ ..+|++|+|++.+. ....+..+.+..+... + .| +|+|+||+|+.
T Consensus 375 ~mi~ga--s~AD~aILVVDAtd-Gv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv 425 (1289)
T 3avx_A 375 NMITGA--AQMDGAILVVAATD-GPMPQTREHILLGRQV-G----VPYIIVFLNKCDMV 425 (1289)
T ss_dssp HHHHTS--CCCSEEEEEEETTT-CSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTC
T ss_pred HHHHHH--hhCCEEEEEEcCCc-cCcHHHHHHHHHHHHc-C----CCeEEEEEeecccc
Confidence 333322 47899999987765 3344555666555543 2 45 79999999995
No 193
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.86 E-value=2.7e-09 Score=96.72 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCcH--
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVNY-- 61 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~~-- 61 (265)
+|.+|||||||+|+|+|... .+++++.+|..+......+.+ ..+.+|||||+..+....+
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl 106 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL 106 (396)
T ss_dssp ECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence 69999999999999999875 677777788777666655543 2589999999976543211
Q ss_pred --HHHHHHHHHHhcCCccEEEEEEecC
Q 024586 62 --HAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 62 --~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
.++..++ .+|++++|++..
T Consensus 107 g~~~l~~ir------~aD~Il~VvD~~ 127 (396)
T 2ohf_A 107 GNAFLSHIS------ACDGIFHLTRAF 127 (396)
T ss_dssp CCHHHHHHH------TSSSEEEEEEC-
T ss_pred HHHHHHHHH------hcCeEEEEEecC
Confidence 3344444 889999997654
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.85 E-value=2.6e-08 Score=96.37 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----cc------cC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~-----~~------~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|.+|+|||||+++|++.... .+ .+ ..+.|...........+..+++|||||..+. ....
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f---~~~~ 91 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF---VGEI 91 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG---HHHH
T ss_pred ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch---HHHH
Confidence 589999999999999953211 00 00 0123444555566677889999999998542 1222
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
...++ .+|++++|++... ........+++.+.... .++++|+||+|+.
T Consensus 92 ~~~l~------~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~-----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGALE------AADAALVAVSAEA-GVQVGTERAWTVAERLG-----LPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHTT-----CCEEEEEECGGGC
T ss_pred HHHHh------hcCcEEEEEcCCc-ccchhHHHHHHHHHHcc-----CCEEEEecCCchh
Confidence 22222 5799999977543 46777777777766532 7899999999984
No 195
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=4.8e-09 Score=95.12 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=62.3
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCc---
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVN--- 60 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~--- 60 (265)
+|.+|||||||+|+|+|...+.+++++.+|..+......+.| ..+.++||||+..+....
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L 105 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL 105 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence 699999999999999998876788888889888887777765 468999999987653322
Q ss_pred -HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586 61 -YHAIQLIKRFLLNKTIDVLLYVDRLD 86 (265)
Q Consensus 61 -~~~~~~i~~~l~~~~~d~iL~V~~~d 86 (265)
..++..+ ..+|++++|++..
T Consensus 106 ~~~fl~~i------r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 106 GNAFLSHV------RAVDAIYQVVRAF 126 (392)
T ss_dssp CHHHHHHH------TTCSEEEEEEECC
T ss_pred HHHHHHHH------HHHHHHHHHHhcc
Confidence 2344333 3789999997764
No 196
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=2e-09 Score=93.62 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH 62 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~ 62 (265)
+|.+|||||||+|+|+|...+.++..+++|....... . +..+.++||||+..+....++
T Consensus 126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTTEEEEECCCCCCSCCCCHH
T ss_pred EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCCCCCHH
Confidence 5999999999999999998778888887776654222 2 447899999999887655543
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.83 E-value=4.8e-08 Score=92.38 Aligned_cols=116 Identities=11% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCCCCCCHHHHHHHHhCCCcc---------------cccCC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV---------------TVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~---------------~~~~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~ 59 (265)
||..++|||||.-+|+-...+ .+.++ .+.|......+..+++..++||||||..|..
T Consensus 37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~-- 114 (548)
T 3vqt_A 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS-- 114 (548)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGGCS--
T ss_pred EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHH--
Confidence 578899999999999732110 11111 1334445556788999999999999997654
Q ss_pred cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHH
Q 024586 60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 134 (265)
Q Consensus 60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~ 134 (265)
.+....++ -+|..|+|++... .+..+...+++...+.. .|.++++||+|. .+.++++.+
T Consensus 115 -~Ev~raL~------~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr---~~ad~~~~~ 173 (548)
T 3vqt_A 115 -EDTYRVLT------AVDSALVVIDAAK-GVEAQTRKLMDVCRMRA-----TPVMTFVNKMDR---EALHPLDVM 173 (548)
T ss_dssp -HHHHHHHH------SCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTS---CCCCHHHHH
T ss_pred -HHHHHHHH------hcCceEEEeecCC-CcccccHHHHHHHHHhC-----CceEEEEecccc---hhcchhHhh
Confidence 23434444 7799999965543 47788888888777664 899999999997 344555555
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.79 E-value=7e-10 Score=99.49 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.||||||+... ....+ ..+|++++|++.... . .. +.++ .. -...+.++|+||+
T Consensus 170 ~~~~~iiiDTpGi~~~------~~~~~------~~aD~vl~V~d~~~~--~-~~-~~l~---~~---~~~~p~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQS------EVAVA------NMVDTFVLLTLARTG--D-QL-QGIK---KG---VLELADIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSSH------HHHHH------TTCSEEEEEEESSTT--C-TT-TTCC---TT---SGGGCSEEEEECC
T ss_pred CCCCEEEEeCCCCCcH------HHHHH------HhCCEEEEEECCCCC--c-cH-HHHH---Hh---HhhcCCEEEEECC
Confidence 5788999999998531 11111 478999999664421 1 11 1111 10 1126889999999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|+.
T Consensus 228 Dl~ 230 (355)
T 3p32_A 228 DGE 230 (355)
T ss_dssp CGG
T ss_pred CCc
Confidence 984
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=96.85 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=34.6
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
..|..+.++||||+... +. .+. ..+|++++|++.... .+.+.++. ..+ ..+.++|+||
T Consensus 164 ~~~~~~iliDT~Gi~~~----~~---~l~-----~~~d~vl~V~d~~~~----~~~~~i~~--~il----~~~~ivVlNK 221 (349)
T 2www_A 164 GAGYDIILIETVGVGQS----EF---AVA-----DMVDMFVLLLPPAGG----DELQGIKR--GII----EMADLVAVTK 221 (349)
T ss_dssp HTTCSEEEEECCCC--C----HH---HHH-----TTCSEEEEEECCC------------------C----CSCSEEEECC
T ss_pred cCCCCEEEEECCCcchh----hh---hHH-----hhCCEEEEEEcCCcc----hhHHHhHH--HHH----hcCCEEEEee
Confidence 36778999999998532 11 111 378999999654421 11111111 112 1578999999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
+|+.
T Consensus 222 ~Dl~ 225 (349)
T 2www_A 222 SDGD 225 (349)
T ss_dssp CSGG
T ss_pred ecCC
Confidence 9984
No 200
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.73 E-value=4.7e-08 Score=89.18 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccC----CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVST----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI 76 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~----~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~ 76 (265)
+|++|+|||||+|+|+|......+. ...+|........ .....++++|+||++.....-+++++.+. + ...
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~--L--~~~ 149 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMK--F--YEY 149 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTT--G--GGC
T ss_pred ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcC--C--Ccc
Confidence 5999999999999999953211111 1112222222221 11225899999998643222223332221 1 233
Q ss_pred cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
+.+++ + +..+....+..+...+.... +|+++|+||.|+
T Consensus 150 ~~~~~-l--S~G~~~kqrv~la~aL~~~~-----~p~~lV~tkpdl 187 (413)
T 1tq4_A 150 DFFII-I--SATRFKKNDIDIAKAISMMK-----KEFYFVRTKVDS 187 (413)
T ss_dssp SEEEE-E--ESSCCCHHHHHHHHHHHHTT-----CEEEEEECCHHH
T ss_pred CCeEE-e--CCCCccHHHHHHHHHHHhcC-----CCeEEEEecCcc
Confidence 55554 3 44346677788888887753 899999999986
No 201
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.69 E-value=2.3e-08 Score=94.99 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEe-------eeCCeEEEEEeCCCCCCCCC-CcHHHHH--HHHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-------SRAGFTLNIVDTPGLIEGGY-VNYHAIQ--LIKRF 70 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~-------~~~g~~v~iiDTPG~~~~~~-~~~~~~~--~i~~~ 70 (265)
+|.+|+|||||+|+|+|..... ...++|..++.... ...+..+.++||||+.+... ....... .+...
T Consensus 44 vG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~l 121 (592)
T 1f5n_A 44 VGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVL 121 (592)
T ss_dssp EEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHHH
Confidence 6999999999999999987532 22223322222111 23577899999999987543 1111111 12222
Q ss_pred HhcCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586 71 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 103 (265)
Q Consensus 71 l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~ 103 (265)
++ ++++|- ... .+++.+...+..+.+
T Consensus 122 ls----s~lv~n--~~~-~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 122 LS----STFVYN--SIG-TINQQAMDQLYYVTE 147 (592)
T ss_dssp HC----SEEEEE--EES-CSSHHHHHTTHHHHT
T ss_pred hc----CeEEEE--CCC-CccHHHHHHHHHHHH
Confidence 22 333333 332 477888877666544
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.61 E-value=2.5e-08 Score=88.85 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=36.5
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586 40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 119 (265)
Q Consensus 40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk 119 (265)
+.+..+.+|||||+.+.. . .+. ..+|++++|++.... . +.+.++. ... ..|.++|+||
T Consensus 146 ~~~~~i~liDTpG~~~~~----~---~~~-----~~aD~vl~Vvd~~~~--~--~~~~l~~--~~~----~~p~ivv~NK 203 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSE----T---EVA-----RMVDCFISLQIAGGG--D--DLQGIKK--GLM----EVADLIVINK 203 (341)
T ss_dssp HTTCSEEEEEEECCTTHH----H---HHH-----TTCSEEEEEECC----------CCCCH--HHH----HHCSEEEECC
T ss_pred ccCCCEEEEeCCCccchH----H---HHH-----HhCCEEEEEEeCCcc--H--HHHHHHH--hhh----cccCEEEEEC
Confidence 457889999999986421 1 111 488999999654321 1 1111111 001 1578999999
Q ss_pred ccCC
Q 024586 120 AQLS 123 (265)
Q Consensus 120 ~D~~ 123 (265)
+|+.
T Consensus 204 ~Dl~ 207 (341)
T 2p67_A 204 DDGD 207 (341)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9984
No 203
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.58 E-value=1.6e-08 Score=86.94 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 58 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~ 58 (265)
+|.+|+|||||+|+|+|.....++..+++|........ +..+.++||||+.+...
T Consensus 105 vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKNI 159 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCCC
T ss_pred eCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCcC
Confidence 59999999999999999887667777777665543221 34678999999988765
No 204
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.58 E-value=2.4e-08 Score=85.18 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=30.4
Q ss_pred CccEEEEEEecCCc---CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 75 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 75 ~~d~iL~V~~~d~~---r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
++|++++|++++.. .+.. -..++..+.+.... ...|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~-~~~~l~~i~~~~~~-~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDD-QLKFVSNLYNQLAK-TKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHH-HHHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHH-HHHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence 47999999887753 2322 23555555544211 127999999999984
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.53 E-value=2.5e-07 Score=86.47 Aligned_cols=111 Identities=20% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHh------CCCcccccCCC--CCC---------C--ccEEEE----------------eeeCCeEE
Q 024586 1 MGKGGVGKSSTVNSII------GEKAVTVSTFQ--SEG---------P--RPVMVS----------------RSRAGFTL 45 (265)
Q Consensus 1 vG~tg~GKSSliN~ll------g~~~~~~~~~~--~~t---------~--~~~~~~----------------~~~~g~~v 45 (265)
+|.+||||||++|.|. |.++..++.-. +.. . -+.... ....+..+
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~Dv 186 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEI 186 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCCE
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 5899999999999999 77654443210 000 0 000000 01267789
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586 46 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS 123 (265)
Q Consensus 46 ~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~ 123 (265)
.||||||.... +.....++........+|.+++|++.... .+ ....++.+.+. .+ ..+|+||+|..
T Consensus 187 vIIDTpG~~~~---~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~--~~~~a~~~~~~------~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 187 IIVDTSGRHKQ---EDSLFEEMLQVANAIQPDNIVYVMDASIG-QA--CEAQAKAFKDK------VDVASVIVTKLDGH 253 (504)
T ss_dssp EEEEECCCCTT---CHHHHHHHHHHHHHHCCSEEEEEEETTCC-TT--HHHHHHHHHHH------HCCCCEEEECTTSC
T ss_pred EEEeCCCCccc---chhHHHHHHHHHhhhcCceEEEEEecccc-cc--HHHHHHHHHhh------cCceEEEEeCCccc
Confidence 99999998643 22333333322211268999999655431 22 33444444432 45 48999999985
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.51 E-value=4.4e-08 Score=87.16 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=35.3
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHH-HHHHHhcCcCcCCcEEEEEe
Q 024586 40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRALIVLT 118 (265)
Q Consensus 40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l-~~l~~~~g~~~~~~~ivV~t 118 (265)
..|..+.++||||+.+.. . .+. ..+|++++|++... . .+.+.+ +.+.+ .+.++|+|
T Consensus 145 ~~~~~~iliDT~Gi~~~~----~---~v~-----~~~d~vl~v~d~~~--~--~~~~~i~~~i~~-------~~~ivvlN 201 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSE----T---AVA-----DLTDFFLVLMLPGA--G--DELQGIKKGIFE-------LADMIAVN 201 (337)
T ss_dssp HTTCCEEEEEECSSSSCH----H---HHH-----TTSSEEEEEECSCC----------CCTTHHH-------HCSEEEEE
T ss_pred cCCCCEEEEECCCCCcch----h---hHH-----hhCCEEEEEEcCCC--c--ccHHHHHHHHhc-------cccEEEEE
Confidence 368899999999996531 1 111 37899999954431 1 111111 11111 35678889
Q ss_pred CccCC
Q 024586 119 HAQLS 123 (265)
Q Consensus 119 k~D~~ 123 (265)
|+|+.
T Consensus 202 K~Dl~ 206 (337)
T 2qm8_A 202 KADDG 206 (337)
T ss_dssp CCSTT
T ss_pred chhcc
Confidence 99974
No 207
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.47 E-value=9e-07 Score=84.70 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=39.4
Q ss_pred eEEEEEeCCCCCCC--CCCc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEE
Q 024586 43 FTLNIVDTPGLIEG--GYVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116 (265)
Q Consensus 43 ~~v~iiDTPG~~~~--~~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV 116 (265)
..+.++|.||+... ...+ ....+.+..++.. +..+++.+...+..-.+.. .++.+...-... .++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g--~rtI~V 220 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTE---ALSMAQEVDPEG--DRTIGI 220 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCH---HHHHHHHHCSSC--CSEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHH---HHHHHHHHhhcC--CceEEE
Confidence 35899999998753 2222 2444555554432 3345555544443212222 333343432222 789999
Q ss_pred EeCccCCC
Q 024586 117 LTHAQLSL 124 (265)
Q Consensus 117 ~tk~D~~~ 124 (265)
+||.|+..
T Consensus 221 lTK~Dlv~ 228 (608)
T 3szr_A 221 LTKPDLVD 228 (608)
T ss_dssp EECGGGSS
T ss_pred ecchhhcC
Confidence 99999864
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.44 E-value=1e-07 Score=91.66 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHHHhCCCc-----cc------ccCCC------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-----VT------VSTFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA 63 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-----~~------~~~~~------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~ 63 (265)
+|..++|||||..+|+-... .. ..++. +.|......+..+++..+++|||||..|..
T Consensus 8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~------ 81 (638)
T 3j25_A 8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL------ 81 (638)
T ss_dssp ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH------
T ss_pred EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH------
Confidence 57889999999999973211 01 11110 233444445678899999999999997642
Q ss_pred HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++.+.+ +-+|..|+|++... .+..+.+..++...+.. .|.++++||.|..
T Consensus 82 -~Ev~raL--~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~ 132 (638)
T 3j25_A 82 -AEVYRSL--SVLDGAILLISAKD-GVQAQTRILFHALRKMG-----IPTIFFINKIDQN 132 (638)
T ss_dssp -HHHHHHH--TTCSEEECCEESSC-TTCSHHHHHHHHHHHHT-----CSCEECCEECCSS
T ss_pred -HHHHHHH--HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcC-----CCeEEEEeccccc
Confidence 2333333 37799999966543 47777778888777764 7889999999974
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.42 E-value=1.4e-07 Score=80.03 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCCCCCCHHHHHHHHh-----CCCccccc
Q 024586 1 MGKGGVGKSSTVNSII-----GEKAVTVS 24 (265)
Q Consensus 1 vG~tg~GKSSliN~ll-----g~~~~~~~ 24 (265)
+|++||||||+++.|. |.++..+.
T Consensus 20 ~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp ECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999999999998 77765443
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.41 E-value=2.4e-06 Score=83.19 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCCCCCHHHHHHHHhCCCcc-----c------ccCC------CCCCCccEEEEeee-------CCeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAV-----T------VSTF------QSEGPRPVMVSRSR-------AGFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~-----~------~~~~------~~~t~~~~~~~~~~-------~g~~v~iiDTPG~~~~ 56 (265)
+|..++|||||..+|+-.... . ..++ .+.|......+..+ ++..+++|||||..|.
T Consensus 19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF 98 (709)
T 4fn5_A 19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF 98 (709)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence 578899999999999832110 0 1110 12232333334444 3578999999999765
Q ss_pred CCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHH
Q 024586 57 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC 134 (265)
Q Consensus 57 ~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~ 134 (265)
. .+....++ -+|..|+|++... .+..+...+++...+.. .|.++++||.|.. ..+++..+
T Consensus 99 ~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~---~a~~~~~~ 158 (709)
T 4fn5_A 99 T---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ---GANFLRVV 158 (709)
T ss_dssp H---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST---TCCHHHHH
T ss_pred H---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc---CccHHHHH
Confidence 3 23333443 5689888865543 47888888888877765 8999999999973 34444444
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.32 E-value=9.6e-07 Score=81.05 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.||||||... .+.....+++.......+|.+++|++... ........+.+.+.. ....+|+||.
T Consensus 181 ~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~-----~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEAT-----PIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSC-----TTEEEEEECC
T ss_pred CCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhC-----CCeEEEEECC
Confidence 356799999999753 33445555555444446899999954432 223334444444433 5678999999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 250 D~~ 252 (443)
T 3dm5_A 250 DGS 252 (443)
T ss_dssp SSC
T ss_pred CCc
Confidence 984
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.26 E-value=2e-07 Score=77.07 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+|||||+|.|++.
T Consensus 36 ~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 589999999999999975
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.24 E-value=1.2e-06 Score=80.40 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.||||||... .+......+......-.+|.+++|++.... . .....+ +.|.........+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~--~~~~~~----~~~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q--QAGIQA----KAFKEAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G--GHHHHH----HHHHTTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeecccc-H--HHHHHH----HHHhhcccCCeEEEEeCC
Confidence 566789999999853 233445555443333468999999554321 1 112222 223222102388999999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 974
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.12 E-value=4.2e-06 Score=76.68 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.|+||||..... .+.....++........+|.+++|++... ........+.+.+.. ....+|+||.|
T Consensus 179 ~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~-----~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASI---GQKAYDLASRFHQAS-----PIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGGHHHHHHHHHHC-----SSEEEEEECGG
T ss_pred CCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCcc---chHHHHHHHHHhccc-----CCcEEEEeccc
Confidence 5678999999974310 22334444444332235688888844332 123344555555544 56889999999
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 74
No 215
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.96 E-value=9.3e-06 Score=74.66 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHhCC---------------CcccccCCCCCCCccEEEEeee---------C--CeEEEEEeCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGE---------------KAVTVSTFQSEGPRPVMVSRSR---------A--GFTLNIVDTPGLI 54 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~---------------~~~~~~~~~~~t~~~~~~~~~~---------~--g~~v~iiDTPG~~ 54 (265)
+|.+++|||+|+|.|+|. .....+ ..++|..++.+-..+ . ...+.++||||++
T Consensus 73 ~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~ 151 (447)
T 3q5d_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 151 (447)
T ss_dssp EESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCC
T ss_pred ECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCccc
Confidence 599999999999999974 111111 122344444333322 2 3578999999998
Q ss_pred CCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586 55 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 103 (265)
Q Consensus 55 ~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~ 103 (265)
+... +.+.-..|-. +..-=.++++|- +.. .++..+.+.++.+.+
T Consensus 152 ~~~~-~~~~d~~ifa-l~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 152 DSQS-TLRDSATVFA-LSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp SSHH-HHHHHHHHHH-HHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred cccc-chhhhHHHHH-HHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence 7642 1111111111 111113566655 332 567777776666544
No 216
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.82 E-value=5.7e-05 Score=65.79 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.||||||..... .++....+++.......+|.+++|++... .......++.+.+. .....+|+||.
T Consensus 179 ~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-----~~i~gvVlnk~ 249 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-----SKIGTIIITKM 249 (297)
T ss_dssp TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-----CTTEEEEEECG
T ss_pred CCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-----CCCCEEEEeCC
Confidence 45678999999986410 22233333332212226788888855442 12223333333331 13478999999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 250 D~~ 252 (297)
T 1j8m_F 250 DGT 252 (297)
T ss_dssp GGC
T ss_pred CCC
Confidence 974
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=8.9e-06 Score=71.26 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
+|++|||||||+|+|.|.....++... .+|....... .. .-.++||||+....
T Consensus 179 vG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~--~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TS--GGLVADTPGFSSLE 238 (307)
T ss_dssp EESHHHHHHHHHHHHCC-------------------CCCCCEEE--ET--TEEEESSCSCSSCC
T ss_pred ECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhh--cC--CEEEecCCCccccc
Confidence 599999999999999997543333322 2332222111 11 13689999997543
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.64 E-value=8.7e-05 Score=68.01 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=39.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.||||||.... +......+........+|.+++|++.... ......++.+.... ...-+|+||.
T Consensus 182 ~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~~~~~~~~f~~~l-----~i~gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNEAL-----PLTGVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTBC---TTHHHHHHHHHHHS-----CCCCEEEECT
T ss_pred CCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecchh---HHHHHHHHHHhccC-----CCeEEEEecC
Confidence 4667999999997532 23333444332222367888888654421 12223333333221 2245799999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 974
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.63 E-value=0.00011 Score=64.92 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
+..+.++||+|........-..+..+.+.+ .+|-.+++.+... ...-...++.+.+.. ...++++||.|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~t---~~~~~~~~~~~~~~~-----~it~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDALA---GNAIVEQARQFNEAV-----KIDGIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGGG---TTHHHHHHHHHHHHS-----CCCEEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecHH---HHHHHHHHHHHHHhc-----CCCEEEEeCcC
Confidence 345678999998543322222333344333 4688888844332 123334445555443 45689999999
Q ss_pred CC
Q 024586 122 LS 123 (265)
Q Consensus 122 ~~ 123 (265)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 74
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.63 E-value=0.00021 Score=62.42 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=39.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEe
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~t 118 (265)
+..+.++||+|........-..++.++..+ ....++.++++.+... .......++.+.+.. ..+++++|
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~-----~~t~iivT 255 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGVIVT 255 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEEEEE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHc-----CCcEEEEE
Confidence 345679999998543211111122222222 1246787777744332 233344555555444 45789999
Q ss_pred CccCC
Q 024586 119 HAQLS 123 (265)
Q Consensus 119 k~D~~ 123 (265)
|.|..
T Consensus 256 h~d~~ 260 (304)
T 1rj9_A 256 KLDGT 260 (304)
T ss_dssp CTTSS
T ss_pred CCccc
Confidence 99864
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.55 E-value=7.8e-05 Score=65.03 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG 56 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~ 56 (265)
+|++|+|||||+|+|. ......+.... +|...... ...+. -.++||||+...
T Consensus 171 ~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~~~~-g~v~d~pg~~~~ 229 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PFGKG-SFVGDTPGFSKV 229 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EETTT-EEEESSCCCSSC
T ss_pred ECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--EcCCC-cEEEECcCcCcC
Confidence 5999999999999999 64333333221 22222211 11111 258999998643
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.49 E-value=0.00023 Score=66.02 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h---cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---L---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~---~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i 114 (265)
.+..+.++||+|.... .......+++.. . ...+|-+|+|++... .......++.+.+.. ....
T Consensus 374 ~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~-----~itg 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAV-----GLTG 442 (503)
T ss_dssp TTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCSE
T ss_pred cCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhc-----CCCE
Confidence 3456889999998533 223333333321 1 124677777844321 233344455555544 3467
Q ss_pred EEEeCccCC
Q 024586 115 IVLTHAQLS 123 (265)
Q Consensus 115 vV~tk~D~~ 123 (265)
+|+||.|..
T Consensus 443 vIlTKLD~t 451 (503)
T 2yhs_A 443 ITLTKLDGT 451 (503)
T ss_dssp EEEECGGGC
T ss_pred EEEEcCCCc
Confidence 899999974
No 223
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=0.0001 Score=64.20 Aligned_cols=54 Identities=30% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~ 57 (265)
+|++|+|||||+|+|.|......+... .+|........ .. --.++||||+....
T Consensus 175 ~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~--~~-~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF--DF-GGYVVDTPGFANLE 235 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC--TT-SCEEESSCSSTTCC
T ss_pred ECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc--CC-CCEEEECcCCCccC
Confidence 599999999999999997643333221 12222211111 11 12589999986544
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.41 E-value=5.6e-05 Score=67.54 Aligned_cols=52 Identities=27% Similarity=0.516 Sum_probs=30.2
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~ 55 (265)
+|++|+|||||+|.|+|... ..++.... +|......... .+ ..++||||+.+
T Consensus 221 vG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q~--~~l~dtpgv~e 280 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-HG--GDVIDSPGVRE 280 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-TS--CEEEECHHHHT
T ss_pred ECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-CC--CEecCcccHHH
Confidence 69999999999999999764 33333211 12222222221 22 24799999854
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.35 E-value=0.00021 Score=62.19 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.|+||||... .....+..+...+....+|.+++|++... . ...+..+.+.|.. ....-+|+||.
T Consensus 181 ~~~dlvIiDT~G~~~---~~~~~~~el~~~l~~~~~~~~~lVl~at~---~---~~~~~~~~~~~~~--l~~~giVltk~ 249 (296)
T 2px0_A 181 SEYDHVFVDTAGRNF---KDPQYIDELKETIPFESSIQSFLVLSATA---K---YEDMKHIVKRFSS--VPVNQYIFTKI 249 (296)
T ss_dssp GGSSEEEEECCCCCT---TSHHHHHHHHHHSCCCTTEEEEEEEETTB---C---HHHHHHHTTTTSS--SCCCEEEEECT
T ss_pred cCCCEEEEeCCCCCh---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---C---HHHHHHHHHHHhc--CCCCEEEEeCC
Confidence 455789999999853 23344444444433234677777754331 1 1223344444431 24456788999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 250 D~~ 252 (296)
T 2px0_A 250 DET 252 (296)
T ss_dssp TTC
T ss_pred Ccc
Confidence 974
No 226
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.12 E-value=0.0004 Score=62.13 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=45.2
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc-----------CCCHHHHHHHHHHHH
Q 024586 35 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-----------RVDNLDKQITRAITD 103 (265)
Q Consensus 35 ~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~-----------r~~~~d~~~l~~l~~ 103 (265)
.....+++..+.+|||+|........ ..|+ .+++++|||++++.+ ++ .+-..+++.+..
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w-------~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~~ 262 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRW-------FECF--DSVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIVN 262 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------C-------TTSC--TTCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHHT
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhH-------HHHh--CCCCEEEEEEECccccccccccccccHH-HHHHHHHHHHhc
Confidence 34556778899999999984322111 1111 488999999888752 12 122334444443
Q ss_pred hcCcCcCCcEEEEEeCccCC
Q 024586 104 NFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 104 ~~g~~~~~~~ivV~tk~D~~ 123 (265)
... -...|+|+|+||+|+.
T Consensus 263 ~~~-~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRV-FSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGG-GTTSEEEEEEECHHHH
T ss_pred chh-hCCCCEEEEEEChhhh
Confidence 210 0127899999999984
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.07 E-value=0.00022 Score=62.31 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHh---cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKR---FLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~---~l~---~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i 114 (265)
.+..+.|+||||.. .......+.++. .+. ...+|.+++|++... .......++.+.+.. .-.-
T Consensus 185 ~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t---~~~~l~~a~~~~~~~-----~i~g 253 (306)
T 1vma_A 185 RNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG 253 (306)
T ss_dssp TTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred cCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHHHHHHHhcC-----CCCE
Confidence 34568999999963 223333333333 321 235788888854331 122222233333322 4566
Q ss_pred EEEeCccCC
Q 024586 115 IVLTHAQLS 123 (265)
Q Consensus 115 vV~tk~D~~ 123 (265)
+|+||.|..
T Consensus 254 vVlTk~D~~ 262 (306)
T 1vma_A 254 IILTKLDGT 262 (306)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCc
Confidence 889999974
No 228
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.07 E-value=0.00041 Score=61.82 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=48.3
Q ss_pred cEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC--------CC--HHHHHHHHHHH
Q 024586 33 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR--------VD--NLDKQITRAIT 102 (265)
Q Consensus 33 ~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r--------~~--~~d~~~l~~l~ 102 (265)
.......+++..+.+|||+|........ ..| -.++|++|||+++++.. .. .+-..+++.+.
T Consensus 183 i~~~~~~~~~~~l~iwDt~GQe~~r~~w-------~~y--f~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 183 IVETHFTFKDLHFKMFDVGGQRSERKKW-------IHC--FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEEEEETTEEEEEEEECCSGGGGGGG-------GGG--CTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred eEEEEEeeCCeeEEEEeCCCchhhhHHH-------HHH--HhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 3344566778899999999974322111 112 24899999998887521 01 12223444443
Q ss_pred HhcCcCcCCcEEEEEeCccCC
Q 024586 103 DNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 103 ~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.... -...|+++|+||+|+.
T Consensus 254 ~~~~-~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 254 NNKW-FTDTSIILFLNKKDLF 273 (353)
T ss_dssp TCGG-GTTSEEEEEEECHHHH
T ss_pred cCcc-ccCCcEEEEEECcCch
Confidence 3110 0127899999999983
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.06 E-value=0.00027 Score=64.49 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.||||||.... +.....++......-.+|.+++|++.. .- ......++.+.... ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence 4567899999997543 333333333322222678888885543 21 22223333333322 3467899999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 864
No 230
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.06 E-value=0.00077 Score=54.40 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=41.7
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D 121 (265)
...+.|+|||+... ......+. .+|.++++...+.. ...-..+++.+.+........++.+|+|+.+
T Consensus 75 ~yD~viiD~~~~~~-----~~~~~~l~------~ad~viiv~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----VITSAAVM------VSDLVIIPVTPSPL--DFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSSS-----HHHHHHHH------HCSEEEEEECSCTT--THHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCCC-----HHHHHHHH------HCCEEEEEecCCHH--HHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 35689999998642 23333333 46899999766542 2444556666665432122245689999998
Q ss_pred C
Q 024586 122 L 122 (265)
Q Consensus 122 ~ 122 (265)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 5
No 231
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.02 E-value=0.00068 Score=61.40 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=47.8
Q ss_pred EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc----------CCCHHHHHHHHHHHHh
Q 024586 35 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----------RVDNLDKQITRAITDN 104 (265)
Q Consensus 35 ~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~----------r~~~~d~~~l~~l~~~ 104 (265)
.....+++..+.+|||.|........ ..|+ .+++++++|++++.+ .--..-..+++.+...
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~~r~~w-------~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRDERRKW-------IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGG-------GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEEeecCCccceecccchhhhhhhhh-------Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 34556778999999999984322111 1121 488999999988751 1111223444444432
Q ss_pred cCcCcCCcEEEEEeCccC
Q 024586 105 FGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 105 ~g~~~~~~~ivV~tk~D~ 122 (265)
.. ....++++|+||+|+
T Consensus 280 ~~-~~~~piiLvgNK~DL 296 (402)
T 1azs_C 280 RW-LRTISVILFLNKQDL 296 (402)
T ss_dssp TT-CSSCCEEEEEECHHH
T ss_pred cc-CCCCeEEEEEEChhh
Confidence 11 112689999999998
No 232
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.94 E-value=0.0021 Score=56.84 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=48.6
Q ss_pred cEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCC-----------cCCCHHHHHHHHHH
Q 024586 33 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV-----------YRVDNLDKQITRAI 101 (265)
Q Consensus 33 ~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~-----------~r~~~~d~~~l~~l 101 (265)
.......+++..+.+|||.|.. ........|. .+++++|+|++++. .++ .+-..+++.+
T Consensus 151 i~~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i 220 (340)
T 4fid_A 151 IHEYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDI 220 (340)
T ss_dssp CEEEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHH
T ss_pred eEEEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchH-HHHHHHHHHH
Confidence 3445566788899999999972 2222223232 58999999988862 112 1223344444
Q ss_pred HHhcCcCcCCcEEEEEeCccCC
Q 024586 102 TDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 102 ~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
..... -...|+++++||+|+.
T Consensus 221 ~~~~~-~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 221 MTNEF-LKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHCGG-GTTSEEEEEEECHHHH
T ss_pred hhhhc-cCCCeEEEEEECchhh
Confidence 33211 0126899999999983
No 233
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.94 E-value=0.0044 Score=56.83 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHh-------C----------CCcccccC-CCCCCCccEEEEee-----eCC--eEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSII-------G----------EKAVTVST-FQSEGPRPVMVSRS-----RAG--FTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~ll-------g----------~~~~~~~~-~~~~t~~~~~~~~~-----~~g--~~v~iiDTPG~~~ 55 (265)
+|..++|||+|+|.|+ | ...+.+++ ..++|...-..... ..| ..+.++||.|+++
T Consensus 73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d 152 (457)
T 4ido_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD 152 (457)
T ss_dssp EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence 5899999999999776 2 13334432 23445543332211 133 4689999999988
Q ss_pred CCCCcH--HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586 56 GGYVNY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD 103 (265)
Q Consensus 56 ~~~~~~--~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~ 103 (265)
.....+ ..+=.+...+ .++++|=. .. .+++.+.+-+..+.+
T Consensus 153 ~~~~~~~d~~ifaLa~LL----SS~~IyN~--~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 153 SQSTLRDSATVFALSTMI----SSIQVYNL--SQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp TTCCHHHHHHHHHHHHHH----CSEEEEEE--ES-SCCHHHHHHHHHHHH
T ss_pred cccCccccHHHHHHHHHH----hhheeecc--cc-cCCHHHHHHHHHHHH
Confidence 755322 1111122222 25666652 22 466666666655443
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.87 E-value=0.0015 Score=57.29 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHh---cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLI---KRFLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL 114 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i---~~~l~---~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i 114 (265)
.+..+.||||||.... .+....++ ...+. ...+|.+++|++... . ...++.+.. |.+. ....=
T Consensus 190 ~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~---~---~~~l~~~~~-~~~~-~~i~G 258 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT---G---QNGVIQAEE-FSKV-ADVSG 258 (320)
T ss_dssp TTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG---T---HHHHHHHHH-HTTT-SCCCE
T ss_pred cCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---c---HHHHHHHHH-Hhhc-CCCcE
Confidence 3556899999997432 22222232 22221 234788888854431 1 233444433 3322 13445
Q ss_pred EEEeCccCC
Q 024586 115 IVLTHAQLS 123 (265)
Q Consensus 115 vV~tk~D~~ 123 (265)
+|+||.|..
T Consensus 259 vVltk~d~~ 267 (320)
T 1zu4_A 259 IILTKMDST 267 (320)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCC
Confidence 889999964
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=6.6e-05 Score=61.48 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHHHHhCCCc-ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~ 53 (265)
+|++|+|||||+|.|++... ........+|..+. ..+.+|..+.++|+..+
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~--~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR--KSEEDGKEYHFISTEEM 76 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC--TTCCTTSSCEECCHHHH
T ss_pred ECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc--CCeeccccceeccHHHh
Confidence 59999999999999997642 12222333444433 23355665555555443
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.71 E-value=0.0011 Score=57.47 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
.+..+.|+||||.... +......+........+|.+++|++... .......++.+.... ...-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~~---~~~~~~~~~~~~~~~-----~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMT---GQEALSVARAFDEKV-----GVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCCC---cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence 3567899999987432 3333333333322225788888855432 122222333333221 3456899999
Q ss_pred cCC
Q 024586 121 QLS 123 (265)
Q Consensus 121 D~~ 123 (265)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 874
No 237
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.62 E-value=0.0017 Score=57.22 Aligned_cols=80 Identities=8% Similarity=0.076 Sum_probs=46.8
Q ss_pred EEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecC--------CcCCCHHHHHHHHHHHHhc
Q 024586 34 VMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLD--------VYRVDNLDKQITRAITDNF 105 (265)
Q Consensus 34 ~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d--------~~r~~~~d~~~l~~l~~~~ 105 (265)
.......++..+.+|||.|... .......|. .+++++++|++++ ...... -.+.++.+....
T Consensus 158 ~~~~~~~~~v~l~iwDtgGQe~-------~R~~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr-~~es~~~~~~i~ 227 (327)
T 3ohm_A 158 IEYPFDLQSVIFRMVDVGGQRS-------ERRKWIHCF--ENVTSIMFLVALSEYDQVLVESDNENR-MEESKALFRTII 227 (327)
T ss_dssp EEEEEEETTEEEEEEEECCSHH-------HHTTGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBH-HHHHHHHHHHHH
T ss_pred EEEEEEeeceeeEEEEcCCchh-------HHHHHHHHh--CCCCEEEEEEECccccccccccccHhH-HHHHHHHHHHHh
Confidence 4455667889999999999721 111111122 5899999998764 112221 122333333333
Q ss_pred CcC--cCCcEEEEEeCccCC
Q 024586 106 GEQ--IWKRALIVLTHAQLS 123 (265)
Q Consensus 106 g~~--~~~~~ivV~tk~D~~ 123 (265)
... ...|+++++||+|+.
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHH
T ss_pred hhhccCCceEEEEEECchhh
Confidence 211 127899999999984
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0026 Score=55.33 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+||||+++.|.|.
T Consensus 106 vG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 699999999999999863
No 239
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.59 E-value=0.0058 Score=54.46 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.|.
T Consensus 163 vG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhh
Confidence 699999999999999863
No 240
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0018 Score=57.61 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=41.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecC----------C-cCCCHHHHHHHHHHHHhcCcCcC
Q 024586 42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLD----------V-YRVDNLDKQITRAITDNFGEQIW 110 (265)
Q Consensus 42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d----------~-~r~~~~d~~~l~~l~~~~g~~~~ 110 (265)
...+.+|||+|......... .+ -.++|++++|++++ . .++ .+-..+++.+..... ...
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~-------~y--~~~~~~iI~v~dis~ydq~l~e~~~~~s~-~~~~~~~~~i~~~~~-~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI-------HL--FEGVTAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPC-FEK 250 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG-------GG--CTTEEEEEEEEEGGGTTCBCSSCTTSBHH-HHHHHHHHHHHTCGG-GSS
T ss_pred ceeeEEEECCCchhhhHHHH-------HH--hCCCCEEEEEEECcccccccccccchhHH-HHHHHHHHHHHhccc-cCC
Confidence 36789999999854322211 11 14889999999885 1 112 122334444443211 012
Q ss_pred CcEEEEEeCccCC
Q 024586 111 KRALIVLTHAQLS 123 (265)
Q Consensus 111 ~~~ivV~tk~D~~ 123 (265)
.|+++|+||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 7899999999983
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.88 E-value=0.0022 Score=52.00 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 10 vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999984
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0023 Score=50.95 Aligned_cols=19 Identities=32% Similarity=0.650 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|||||||++.|.+..
T Consensus 11 ~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999999853
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.82 E-value=0.0011 Score=53.66 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|+||||||||++.|+...
T Consensus 7 ~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999998653
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.80 E-value=0.0024 Score=51.95 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 26 ~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 6999999999999999854
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.71 E-value=0.0035 Score=52.41 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 37 iG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 246
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.67 E-value=0.0089 Score=48.78 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586 42 GFTLNIVDTPGL-IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120 (265)
Q Consensus 42 g~~v~iiDTPG~-~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~ 120 (265)
...+.|+|||+. ... .....+. .+|.++++...+...+ ..-..+++.+.+.. ..++.+|+|+.
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l~------~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~----~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALAD------GCDLLVIPSTPDALAL-DALMLTIETLQKLG----NNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHHH------TSSEEEEEECSSHHHH-HHHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHHH------HCCEEEEEecCCchhH-HHHHHHHHHHHhcc----CCCEEEEEEec
Confidence 456899999986 322 2222333 6799999965543211 11234445555432 14588999999
Q ss_pred cC
Q 024586 121 QL 122 (265)
Q Consensus 121 D~ 122 (265)
+.
T Consensus 131 ~~ 132 (209)
T 3cwq_A 131 PP 132 (209)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.52 E-value=0.0039 Score=51.74 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 36 iG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EECTTSCHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 248
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.50 E-value=0.0038 Score=49.89 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 6 ~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999863
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.49 E-value=0.0038 Score=51.69 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|+|..
T Consensus 22 ~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999864
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.48 E-value=0.0038 Score=51.44 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 29 vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999999853
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.48 E-value=0.02 Score=44.15 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||+|++++.+.-
T Consensus 42 ~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp ESSSTTTTCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999853
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.46 E-value=0.0038 Score=49.90 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 7 ~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999999754
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.41 E-value=0.0052 Score=52.41 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 43 iG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 254
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.41 E-value=0.0054 Score=51.47 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 30 iG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 255
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.40 E-value=0.0054 Score=52.63 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 40 iGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 6999999999999999964
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.40 E-value=0.0053 Score=51.35 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 257
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.40 E-value=0.0054 Score=52.15 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 38 iG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 258
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.39 E-value=0.0054 Score=51.98 Aligned_cols=19 Identities=42% Similarity=0.643 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 39 iG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.36 E-value=0.0044 Score=49.82 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+||||+++.|.|.
T Consensus 13 ~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 599999999999999985
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.33 E-value=0.006 Score=50.32 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 41 iG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 261
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.31 E-value=0.006 Score=51.18 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 262
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.29 E-value=0.006 Score=51.38 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.27 E-value=0.0063 Score=50.59 Aligned_cols=19 Identities=42% Similarity=0.643 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.24 E-value=0.026 Score=48.78 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQL 122 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~ 122 (265)
.+.+||| ......... .+ ..++|++++|++++....+ ..-..++..+... ..|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~-------~~--~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~-----~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTK-------PH--VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-----ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETT-------TT--EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-----TCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeec-------cc--cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEeHHHc
Confidence 6889999 322221111 11 1488999999887753322 2223455544431 2799999999999
Q ss_pred C
Q 024586 123 S 123 (265)
Q Consensus 123 ~ 123 (265)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 5
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.22 E-value=0.0066 Score=51.18 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999995
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.20 E-value=0.0068 Score=47.79 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.+++.
T Consensus 15 ~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 15 IGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp ECCTTSCHHHHHHHHSCG
T ss_pred ECCCCCCHHHHHHHHccC
Confidence 699999999999987653
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.20 E-value=0.0068 Score=51.62 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 56 iG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCCcHHHHHHHHHcCC
Confidence 6999999999999999964
No 268
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.20 E-value=0.0069 Score=51.14 Aligned_cols=19 Identities=32% Similarity=0.608 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 32 iG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999974
No 269
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.19 E-value=0.0069 Score=51.35 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.19 E-value=0.0068 Score=50.77 Aligned_cols=19 Identities=37% Similarity=0.705 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 271
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.13 E-value=0.0074 Score=51.42 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999996
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.11 E-value=0.0073 Score=51.25 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhccC
Confidence 5999999999999999964
No 273
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.06 E-value=0.0077 Score=51.46 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.04 E-value=0.0079 Score=50.86 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 275
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.03 E-value=0.0081 Score=51.59 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 53 iG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999964
No 276
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.03 E-value=0.008 Score=51.17 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 39 iG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.98 E-value=0.0078 Score=47.82 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 15 ~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EECTTSCHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999986
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.97 E-value=0.0068 Score=51.52 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|+|.
T Consensus 31 ~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp ECSTTCSHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 599999999999999984
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.80 E-value=0.0098 Score=48.40 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+||||+++.|.+..
T Consensus 14 ~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp ECCTTSCHHHHHHHHHHST
T ss_pred ECcCCCCHHHHHHHHHhhC
Confidence 5999999999999999764
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.78 E-value=0.0068 Score=49.30 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 28 ~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp ECCTTSCTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999885
No 281
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.75 E-value=0.0085 Score=46.95 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999999865
No 282
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.72 E-value=0.011 Score=50.30 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 283
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.68 E-value=0.011 Score=52.71 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 60 iGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHhcCC
Confidence 6999999999999999964
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.61 E-value=0.0065 Score=49.85 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999986
No 285
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.55 E-value=0.0077 Score=52.47 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|+|--
T Consensus 86 vG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSS
T ss_pred ECCCCchHHHHHHHHHcCC
Confidence 6999999999999999953
No 286
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.40 E-value=0.014 Score=51.88 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 47 lGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 287
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.39 E-value=0.014 Score=52.32 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 35 lGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHcCC
Confidence 6999999999999999964
No 288
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.37 E-value=0.012 Score=50.82 Aligned_cols=19 Identities=42% Similarity=0.643 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EESTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 5999999999999999964
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.32 E-value=0.011 Score=51.34 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|+|-
T Consensus 132 vGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhh
Confidence 699999999999999963
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.32 E-value=0.0099 Score=48.11 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.|.
T Consensus 12 ~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 12 AGGTASGKTTLAQALART 29 (211)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999884
No 291
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.30 E-value=0.013 Score=52.24 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 36 lGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EESTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999964
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.29 E-value=0.016 Score=51.74 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCchHHHHHHHHhcCC
Confidence 5999999999999999964
No 293
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.27 E-value=0.016 Score=51.68 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCchHHHHHHHHHCCC
Confidence 5999999999999999964
No 294
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.22 E-value=0.016 Score=51.82 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 35 lGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCcHHHHHHHHHHcCC
Confidence 5999999999999999964
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.21 E-value=0.013 Score=52.21 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+++|+|.
T Consensus 129 ~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999985
No 296
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.21 E-value=0.062 Score=47.77 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+||||++++|.
T Consensus 29 ~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999987
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.18 E-value=0.013 Score=52.02 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||+|+|+|.-
T Consensus 181 vG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp EESSSSCHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHhcC
Confidence 5999999999999999964
No 298
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.16 E-value=0.16 Score=44.61 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+||||+++.+.+.
T Consensus 50 ~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 299
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.16 E-value=0.013 Score=46.91 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|.+|+||||+++.|.+.-
T Consensus 12 ~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 5999999999999998754
No 300
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.14 E-value=0.017 Score=51.62 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 43 lGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHHcCC
Confidence 5999999999999999964
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.14 E-value=0.01 Score=48.89 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=11.4
Q ss_pred CCCCCCCHHHHHHHHh-CCC
Q 024586 1 MGKGGVGKSSTVNSII-GEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~ll-g~~ 19 (265)
+|++|+||||+++.|. |..
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECSCC----CHHHHHHC---
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 5999999999999999 753
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.12 E-value=0.014 Score=46.35 Aligned_cols=17 Identities=41% Similarity=0.687 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+++.|.+
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 59999999999999986
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.01 E-value=0.015 Score=46.88 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 7 ~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHhhc
Confidence 5999999999999999853
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.00 E-value=0.014 Score=51.35 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||+|+|+|.-
T Consensus 177 ~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp EESTTSCHHHHHHHGGGGS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 305
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.78 E-value=0.014 Score=51.67 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 32 lGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSS
T ss_pred ECCCCccHHHHHHHHHcCC
Confidence 5999999999999999964
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.78 E-value=0.022 Score=45.93 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+||||||+++.|...
T Consensus 18 ~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999764
No 307
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.73 E-value=0.015 Score=47.36 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 589999999999999984
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.71 E-value=0.019 Score=44.72 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|.+.
T Consensus 10 ~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999874
No 309
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.69 E-value=0.019 Score=45.65 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+|||||++.|++.
T Consensus 12 ~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHh
Confidence 499999999999999975
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.66 E-value=0.019 Score=50.07 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|.
T Consensus 96 ~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHhh
Confidence 599999999999999984
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.64 E-value=0.02 Score=46.13 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 35 ~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999763
No 312
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.64 E-value=0.023 Score=44.70 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++++.+.
T Consensus 44 ~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999875
No 313
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.61 E-value=0.02 Score=51.48 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 53 lGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EESTTSSHHHHHHHHHTCS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 5999999999999999964
No 314
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.61 E-value=0.019 Score=52.19 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+++|+|.
T Consensus 173 ~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999985
No 315
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.60 E-value=0.2 Score=42.22 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.+.
T Consensus 57 ~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp ESSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999999764
No 316
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.55 E-value=0.019 Score=51.23 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+++|+|.
T Consensus 142 vG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999984
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.53 E-value=0.027 Score=46.81 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHh---CCC
Q 024586 1 MGKGGVGKSSTVNSII---GEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~ll---g~~ 19 (265)
+|.+|+||||+++.|. |..
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHHHhCCe
Confidence 5999999999999999 864
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.45 E-value=0.0084 Score=47.62 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|++.
T Consensus 8 vG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EESCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 589999999999999985
No 319
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.42 E-value=0.021 Score=53.28 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||+|+|+|.-
T Consensus 266 ~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp EESTTSSHHHHHHHHGGGS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999999853
No 320
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.40 E-value=0.014 Score=51.85 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|-.
T Consensus 37 lGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.33 E-value=0.023 Score=45.66 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|.+.
T Consensus 31 ~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999874
No 322
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.33 E-value=0.029 Score=46.20 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+|||||++.|+
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 5999999999999888
No 323
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.30 E-value=0.024 Score=46.09 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|||||||+|.|++.
T Consensus 44 vG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 589999999999999965
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.28 E-value=0.026 Score=44.47 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+||||++.+|.+
T Consensus 32 ~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 32 VGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999864
No 325
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.35 Score=44.07 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.++
T Consensus 221 ~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 221 YGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999999875
No 326
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.22 E-value=0.02 Score=50.81 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 176 vG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999853
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.04 E-value=0.027 Score=46.89 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+||||+++.|.|.
T Consensus 31 ~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999773
No 328
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.94 E-value=0.029 Score=43.82 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 14 ~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAH 30 (175)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999999865
No 329
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.93 E-value=0.035 Score=52.05 Aligned_cols=19 Identities=42% Similarity=0.819 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 31 iGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999964
No 330
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.78 E-value=0.018 Score=47.92 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||+++|.|..
T Consensus 33 ~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999853
No 331
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.73 E-value=0.04 Score=51.70 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 53 vG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 332
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.55 E-value=0.043 Score=51.85 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|--
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.51 E-value=0.037 Score=45.10 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|.+.
T Consensus 11 ~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999763
No 334
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.6 Score=42.43 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.++
T Consensus 222 yGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 222 YGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp ESSTTTTHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHHH
Confidence 399999999999999875
No 335
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.044 Score=52.15 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 109 vGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 6999999999999999964
No 336
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.45 E-value=0.66 Score=39.19 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||++++++.+.
T Consensus 60 ~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVATE 77 (297)
T ss_dssp ESSSSSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHH
Confidence 499999999999999874
No 337
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.38 E-value=0.33 Score=42.30 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||++++.+...
T Consensus 50 ~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CBCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999864
No 338
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.38 E-value=0.047 Score=42.18 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.36 E-value=0.051 Score=41.84 Aligned_cols=16 Identities=44% Similarity=0.862 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+||||++.+|.
T Consensus 29 ~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999975
No 340
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.36 E-value=0.049 Score=41.93 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSI 15 (265)
Q Consensus 1 vG~tg~GKSSliN~l 15 (265)
+|.+||||||+.+.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999999
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.35 E-value=0.05 Score=43.69 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 8 ~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp ECSTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999987
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.31 E-value=0.05 Score=42.47 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|...
T Consensus 9 ~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999999763
No 343
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.27 E-value=0.5 Score=38.93 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.+.
T Consensus 45 ~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999999763
No 344
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.23 E-value=0.042 Score=51.97 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|--
T Consensus 375 vG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTSSHHHHHHHHTTTT
T ss_pred ECCCCCCHHHHHHHHhhcc
Confidence 6999999999999999964
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.14 E-value=0.035 Score=48.07 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+|||||++.|.|.
T Consensus 86 ~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999884
No 346
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.12 E-value=0.026 Score=49.18 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|.+|+||||++|.|+|..
T Consensus 10 ~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EESSSSSCHHHHHHHHHSC
T ss_pred EecCCCCHHHHHHHHHhhc
Confidence 4899999999999999753
No 347
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.10 E-value=0.042 Score=50.79 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.|-
T Consensus 35 iG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 599999999999999973
No 348
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.07 E-value=0.053 Score=51.61 Aligned_cols=19 Identities=32% Similarity=0.678 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 123 iG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 6999999999999999964
No 349
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.95 E-value=0.06 Score=45.09 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|.+|+||||+++.|.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 33 DGPSGAGKGTLCKALA 48 (252)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999999
No 350
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.85 E-value=0.036 Score=52.36 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 373 vG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCChHHHHHHHHhcCC
Confidence 6999999999999999964
No 351
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.82 E-value=0.042 Score=52.18 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|--
T Consensus 387 vG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSS
T ss_pred ECCCCCcHHHHHHHHhcCc
Confidence 6999999999999999964
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.80 E-value=0.041 Score=44.30 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+++.|.+
T Consensus 28 ~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999976
No 353
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.80 E-value=0.042 Score=45.28 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 26 ~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 499999999999999875
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.77 E-value=0.056 Score=43.48 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|.+.
T Consensus 27 ~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 489999999999999986
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.75 E-value=0.05 Score=43.61 Aligned_cols=17 Identities=47% Similarity=0.599 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+++.|.+
T Consensus 24 ~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 356
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.72 E-value=0.041 Score=52.18 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|--
T Consensus 376 vG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 6999999999999999964
No 357
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.72 E-value=0.68 Score=40.95 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+..+...
T Consensus 67 ~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999888753
No 358
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.70 E-value=0.064 Score=41.69 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999999986
No 359
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.67 E-value=0.045 Score=51.81 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|.-
T Consensus 375 vG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSS
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999999964
No 360
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.56 E-value=0.054 Score=43.89 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+|||||++.|.+
T Consensus 29 ~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999985
No 361
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.50 E-value=0.067 Score=50.14 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 362
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.40 E-value=0.058 Score=44.90 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+++|.+.
T Consensus 55 ~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999875
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.39 E-value=0.057 Score=47.23 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 98 ~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998763
No 364
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.7 Score=41.94 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.++
T Consensus 212 ~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 212 YGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp ESCTTTTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999999874
No 365
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.048 Score=50.14 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 144 vGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EESTTSSHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCcc
Confidence 5999999999999999853
No 366
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.15 E-value=0.08 Score=42.41 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+...|.+
T Consensus 31 ~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999999874
No 367
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.14 E-value=0.053 Score=43.41 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 48999999999999987
No 368
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.95 E-value=0.64 Score=41.18 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=30.8
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
..|++++|+++.+ .+..+...+.+..+. +|+++|+||+|+.+
T Consensus 69 ~~~~il~VvD~~d-----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 69 SDALVVKIVDIFD-----FNGSWLPGLHRFVGN---NKVLLVGNKADLIP 110 (368)
T ss_dssp SCCEEEEEEETTS-----HHHHCCTTHHHHSSS---SCEEEEEECGGGSC
T ss_pred cCcEEEEEEECCC-----CcccHHHHHHHHhCC---CcEEEEEEChhcCC
Confidence 6789999976653 234555666666653 89999999999964
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.89 E-value=0.066 Score=45.56 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+++|.|.
T Consensus 50 ~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ESSTTSCHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999885
No 370
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.82 E-value=2 Score=37.03 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.++
T Consensus 51 ~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp ESSSSSCHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHH
Confidence 399999999999999874
No 371
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.70 E-value=0.42 Score=41.08 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586 74 KTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLS 123 (265)
Q Consensus 74 ~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~ivV~tk~D~~ 123 (265)
.++|++++|+++....++... ..++..+... ..|+++|+||+|+.
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-----~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-----KVEPVIVFNKIDLL 123 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-----TCEEEEEECCGGGC
T ss_pred HhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-----CCCEEEEEEcccCC
Confidence 488999999777643333331 2344444331 27899999999995
No 372
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.44 E-value=1.3 Score=39.76 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHhCC
Q 024586 2 GKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 2 G~tg~GKSSliN~llg~ 18 (265)
|++|+|||+++.++.++
T Consensus 189 GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 189 GPPGTGKTLLARAVAHH 205 (405)
T ss_dssp SCSSSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999875
No 373
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.41 E-value=0.099 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999975
No 374
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.38 E-value=0.099 Score=49.73 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999964
No 375
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.33 E-value=0.1 Score=41.39 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+++.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISK 22 (205)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 49999999999999876
No 376
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.32 E-value=0.083 Score=45.44 Aligned_cols=18 Identities=39% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+|||||++.|.+.
T Consensus 37 ~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998874
No 377
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.32 E-value=0.083 Score=42.51 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+|||||++.|.+
T Consensus 26 ~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGL 42 (220)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999987
No 378
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.31 E-value=0.12 Score=40.53 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+++.|..
T Consensus 9 ~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 379
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.26 E-value=0.1 Score=40.89 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 11 ~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999853
No 380
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.22 E-value=0.071 Score=47.13 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 77 iG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999964
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.22 E-value=0.086 Score=44.59 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+++|.+.
T Consensus 79 ~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcChHHHHHHHHHHH
Confidence 599999999999999985
No 382
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.10 E-value=0.11 Score=49.53 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHHHHHhCCCc
Q 024586 1 MGKGGVGKSSTVNSIIGEKA 20 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~ 20 (265)
+|++|+|||||++.|.|-..
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCCcHHHHHHHHhcCCC
Confidence 59999999999999999753
No 383
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.08 E-value=2.2 Score=36.38 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHhCC
Q 024586 2 GKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 2 G~tg~GKSSliN~llg~ 18 (265)
|++|+|||+++.++...
T Consensus 55 G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 55 PSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SSTTSSHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 77999999999999653
No 384
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.07 E-value=0.11 Score=40.70 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999863
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.04 E-value=0.087 Score=46.02 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.+.
T Consensus 57 ~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999885
No 386
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.01 E-value=0.074 Score=45.38 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.+.
T Consensus 41 ~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 589999999999998864
No 387
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.99 E-value=0.12 Score=41.88 Aligned_cols=16 Identities=44% Similarity=0.862 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+||||++.+|.
T Consensus 29 ~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 29 IGQNGSGKSSLLDAIL 44 (203)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5999999999999875
No 388
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.96 E-value=1.9 Score=39.51 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.++
T Consensus 249 yGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 249 YGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSCTTSSHHHHHHHHHHH
T ss_pred eCCCCCcHHHHHHHHHhc
Confidence 499999999999999875
No 389
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.94 E-value=0.12 Score=40.81 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|+..
T Consensus 10 ~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 489999999999999874
No 390
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.93 E-value=0.095 Score=41.12 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+++.|..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999865
No 391
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.76 E-value=0.12 Score=43.25 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 7 ~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHh
Confidence 59999999999999864
No 392
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.75 E-value=0.099 Score=41.16 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 11 TGHPATGKTTLSQALAT 27 (193)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.73 E-value=0.12 Score=40.34 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999876
No 394
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.66 E-value=0.1 Score=42.66 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||+..|.+.
T Consensus 30 ~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 599999999999999984
No 395
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.61 E-value=0.084 Score=48.18 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|.+|+|||||++.|.|..
T Consensus 163 vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 5999999999999999964
No 396
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.19 E-value=0.12 Score=44.33 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+++.|..
T Consensus 39 ~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp ECCTTSCTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999964
No 397
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.18 E-value=0.14 Score=40.00 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|.+|+||||+.+.|.
T Consensus 17 ~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 17 TGTPGVGKTTLGKELA 32 (180)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 4999999999999987
No 398
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.12 E-value=0.14 Score=40.35 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|...
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998654
No 399
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.08 E-value=0.17 Score=39.05 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||++++.+...
T Consensus 49 ~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998864
No 400
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.07 E-value=1.1 Score=39.63 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.+|...
T Consensus 154 ~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 154 FGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp ESSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999999654
No 401
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.69 Score=42.06 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHhCC
Q 024586 2 GKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 2 G~tg~GKSSliN~llg~ 18 (265)
|++|+|||+++.++.++
T Consensus 222 GPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 222 GPPGTGKTLLARACAAQ 238 (434)
T ss_dssp SCTTSSHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 99999999999999875
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.01 E-value=0.15 Score=39.69 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+...|..
T Consensus 10 ~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 10 IGFMGSGKSTLARALAK 26 (175)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 403
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.95 E-value=0.11 Score=51.97 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 705 iGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999974
No 404
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.92 E-value=0.15 Score=40.06 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 19 ~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 405
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.87 E-value=0.52 Score=41.78 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=28.8
Q ss_pred CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
+.+++++|+++.+. . ..+...+.+.++. +|+++|+||+|+.+
T Consensus 71 ~~~lil~VvD~~d~--~---~s~~~~l~~~l~~---~piilV~NK~DLl~ 112 (369)
T 3ec1_A 71 SKALVVNIVDIFDF--N---GSFIPGLPRFAAD---NPILLVGNKADLLP 112 (369)
T ss_dssp HCCEEEEEEETTCS--G---GGCCSSHHHHCTT---SCEEEEEECGGGSC
T ss_pred cCcEEEEEEECCCC--C---CchhhHHHHHhCC---CCEEEEEEChhcCC
Confidence 56899999766542 2 1234444555543 89999999999974
No 406
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.82 E-value=0.084 Score=54.74 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
||+||+|||||++.|++-
T Consensus 1111 VG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 699999999999999984
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.77 E-value=0.18 Score=39.75 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+++.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 408
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.68 E-value=0.13 Score=53.06 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|+|.-
T Consensus 422 vG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999863
No 409
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.65 E-value=0.13 Score=53.42 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
||++|+|||||++.|+|.-
T Consensus 450 vG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSS
T ss_pred EecCCCcHHHHHHHhcccc
Confidence 6999999999999999963
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.59 E-value=0.16 Score=40.88 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|.+||||||+.+.|.
T Consensus 6 ~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQII 21 (216)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999999985
No 411
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.30 E-value=0.18 Score=38.92 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 8 VGARGCGMTTVGRELAR 24 (173)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 412
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.22 E-value=0.18 Score=40.02 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|.+|+||||+++.|...
T Consensus 10 ~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp ECCTTSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.14 E-value=0.14 Score=45.68 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||||++.|.+.
T Consensus 175 ~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 499999999999999873
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.13 E-value=0.15 Score=42.91 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 54 ~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999965
No 415
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.07 E-value=1.2 Score=37.80 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=31.7
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 48 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 48 iDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
-+.||... ++.+.+.+.+ ..+|++++|++..... +..... +.+..+. +|.++|+||+|+.+
T Consensus 4 ~w~PGhm~------ka~~~~~~~l--~~aDvVl~VvDAr~p~-~~~~~~----l~~~l~~---kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 4 QWFPGHMA------KARREVTEKL--KLIDIVYELVDARIPM-SSRNPM----IEDILKN---KPRIMLLNKADKAD 64 (282)
T ss_dssp -----CTT------HHHHHHHHHG--GGCSEEEEEEETTSTT-TTSCHH----HHHHCSS---SCEEEEEECGGGSC
T ss_pred cCCchHHH------HHHHHHHHHH--hhCCEEEEEEeCCCCC-ccCCHH----HHHHHCC---CCEEEEEECcccCC
Confidence 34576521 3334444333 3789999996654322 211111 2222332 89999999999964
No 416
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.05 E-value=0.19 Score=39.39 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 9 ~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVE 25 (196)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 417
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.04 E-value=0.22 Score=39.68 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+++.|..
T Consensus 10 ~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKD 26 (213)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 418
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=87.99 E-value=0.19 Score=44.00 Aligned_cols=16 Identities=44% Similarity=0.862 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+||||++.+|.
T Consensus 29 ~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAIL 44 (339)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999974
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.87 E-value=0.19 Score=40.48 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999853
No 420
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.85 E-value=0.17 Score=50.72 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=17.0
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.|..
T Consensus 467 iGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp ECSTTSSHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999654
No 421
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=87.81 E-value=1.3 Score=36.45 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=32.9
Q ss_pred CccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcC---cCCcEEEEEeCc-cCCCCCCCCHHHHH
Q 024586 75 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQ---IWKRALIVLTHA-QLSLPDRLDYEVFC 134 (265)
Q Consensus 75 ~~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~---~~~~~ivV~tk~-D~~~~~~~~~~~~~ 134 (265)
+.|+++||++..+. ++. -+..+..|.++..++ ...|++|..||. |+ +...+..+..
T Consensus 125 ~TdglIfVVDSsD~~R~e--ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl--p~Ams~~EI~ 185 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD--VKRMPCFYLA 185 (227)
T ss_dssp HCSEEEEEEECBTTCCCC--HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT--SCBCCHHHHH
T ss_pred CCCEEEEEeccccHhHHH--HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc--cCCCCHHHHH
Confidence 67999999765443 343 333444445544332 235888888996 56 4555555443
No 422
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.80 E-value=1.1 Score=38.62 Aligned_cols=47 Identities=13% Similarity=-0.006 Sum_probs=29.2
Q ss_pred CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586 74 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL 124 (265)
Q Consensus 74 ~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~ 124 (265)
..+|.+++|.++....++.. .+-+.+...... .++.++|+||+|+.+
T Consensus 85 anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~--~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEAN--DIQPIICITKMDLIE 131 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTT--TCEEEEEEECGGGCC
T ss_pred HhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHC--CCCEEEEEECCccCc
Confidence 47899999976654334443 233333222111 278899999999964
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.79 E-value=0.2 Score=40.52 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+.+.|..
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 424
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.76 E-value=0.23 Score=38.96 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 425
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.75 E-value=0.16 Score=42.17 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||+++.+|.+.
T Consensus 51 ~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 426
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.47 E-value=0.13 Score=49.48 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+|||||+|.|+
T Consensus 354 iGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 354 TGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ECSTTSSHHHHHTTTH
T ss_pred EeeCCCCHHHHHHHHH
Confidence 6999999999998765
No 427
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.45 E-value=0.075 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|...
T Consensus 6 ~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 488999999999998753
No 428
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.42 E-value=0.22 Score=39.03 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+...|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 429
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.37 E-value=0.18 Score=39.97 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|...
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999999865
No 430
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.34 E-value=0.18 Score=39.68 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 15 ~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998863
No 431
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.30 E-value=0.26 Score=37.86 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp ESCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999854
No 432
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.25 E-value=0.14 Score=44.38 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+||||++.+|.
T Consensus 30 ~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 30 VGPNGSGKSNIIDAIK 45 (322)
T ss_dssp ECCTTTCSTHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 5999999999999997
No 433
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.95 E-value=0.23 Score=44.17 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+|||++++.|+..
T Consensus 41 ~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 41 LAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 599999999999999864
No 434
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.89 E-value=0.052 Score=48.67 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+|||||+++|.+
T Consensus 66 vG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 66 TGETGAGKSIIVDALGL 82 (415)
T ss_dssp EESHHHHHHHHTHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988843
No 435
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.86 E-value=0.23 Score=39.72 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+++.|..
T Consensus 16 ~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 436
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=86.83 E-value=0.19 Score=45.44 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+||||++++|.+
T Consensus 32 ~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISF 48 (430)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999999985
No 437
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.75 E-value=0.21 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 18 ~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 438
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.65 E-value=0.29 Score=38.85 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.++.+.
T Consensus 60 ~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998864
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.64 E-value=0.17 Score=42.82 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+|||||+..|.+
T Consensus 36 ~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999999886
No 440
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.62 E-value=0.25 Score=39.81 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 31 ~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998763
No 441
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.61 E-value=0.26 Score=39.22 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|..
T Consensus 21 ~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998874
No 442
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.60 E-value=0.26 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 26 ~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 443
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.47 E-value=0.21 Score=39.02 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|..
T Consensus 12 ~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998853
No 444
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.45 E-value=0.26 Score=41.31 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 10 ~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.45 E-value=0.22 Score=40.65 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 13 ~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999863
No 446
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.41 E-value=0.21 Score=39.89 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+++.|..
T Consensus 15 ~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999874
No 447
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=86.31 E-value=0.22 Score=44.22 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|++|+||||++++|.+
T Consensus 32 ~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 32 YGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCChhHHHHHHHH
Confidence 59999999999999985
No 448
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.30 E-value=0.26 Score=40.13 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|+||+|||+|...|...-
T Consensus 40 ~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ECCCTTTTHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 4999999999999998653
No 449
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.22 E-value=0.22 Score=40.38 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+++.|..
T Consensus 11 ~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 11 SGAPASGKGTQCELIKT 27 (222)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 450
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.19 E-value=0.17 Score=39.42 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=10.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp ECCC----CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999863
No 451
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.16 E-value=0.27 Score=45.76 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.||+|||+++|+|+.
T Consensus 173 aG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 173 AGTTGSGASVGVNAMIL 189 (512)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999875
No 452
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.10 E-value=0.28 Score=39.69 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 10 ~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.05 E-value=0.28 Score=40.75 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 15 ~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999873
No 454
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.01 E-value=5.5 Score=39.71 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSI 15 (265)
Q Consensus 1 vG~tg~GKSSliN~l 15 (265)
+|++|+||||+++.+
T Consensus 668 tGpNGsGKSTlLr~i 682 (934)
T 3thx_A 668 TGPNMGGKSTYIRQT 682 (934)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999999998
No 455
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.98 E-value=0.28 Score=39.32 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+.+.|..
T Consensus 18 tG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKN 34 (192)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998864
No 456
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.95 E-value=0.29 Score=37.68 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+||||||+.+.|..
T Consensus 13 ~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998853
No 457
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.87 E-value=0.34 Score=39.14 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++..+...
T Consensus 58 ~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 458
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.81 E-value=0.17 Score=42.26 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|...
T Consensus 38 ~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp ESCGGGTTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998753
No 459
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.70 E-value=0.3 Score=39.83 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+++.|..
T Consensus 6 ~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 460
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.66 E-value=0.2 Score=43.55 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|++|+||||+++.|.+
T Consensus 42 ~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLE 58 (354)
T ss_dssp ECSTTSSHHHHHHTHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999887
No 461
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.64 E-value=0.25 Score=38.09 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++..+...
T Consensus 49 ~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp ESCGGGCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999988764
No 462
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=85.60 E-value=0.23 Score=43.26 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|.||+||||+.+.|++..
T Consensus 150 ~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 150 TGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCCHHHHHHHHHhcC
Confidence 4899999999999999753
No 463
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.55 E-value=0.28 Score=50.69 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|+|-.
T Consensus 1065 vG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHhcCc
Confidence 6999999999999999964
No 464
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.35 E-value=0.14 Score=48.24 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+++.|.+.
T Consensus 375 iG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EESSCHHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHh
Confidence 599999999999999885
No 465
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=85.35 E-value=0.26 Score=43.69 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+||||++.+|.
T Consensus 31 ~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 31 IGENGSGKSSIFEAVF 46 (371)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998874
No 466
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.09 E-value=0.27 Score=39.63 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999854
No 467
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.87 E-value=0.5 Score=41.09 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|++|+||||++..+..
T Consensus 44 ~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 44 SGTRGVGKTSIARLLAK 60 (373)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999998875
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.79 E-value=0.4 Score=38.02 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|.+
T Consensus 8 ~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 8 DGPSASGKSSVARRVAA 24 (208)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999865
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.76 E-value=0.35 Score=41.10 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999875
No 470
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.55 E-value=0.37 Score=39.90 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+||||||+...|..
T Consensus 35 ~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 471
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.54 E-value=0.39 Score=42.20 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-cc--------CCCCCCCccEEEEeeeCCeEEEEEeCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-VS--------TFQSEGPRPVMVSRSRAGFTLNIVDTPGL 53 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-~~--------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~ 53 (265)
+|+||+|||+|...|...-... ++ ...-.|..+. ..+..|.+..++|...+
T Consensus 46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence 5999999999999999763211 11 0112233322 34566777888887766
No 472
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.43 E-value=0.44 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++..+...
T Consensus 44 ~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 44 SGPPGTGKTATAIALARD 61 (226)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 473
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.28 E-value=0.44 Score=38.10 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++..+...
T Consensus 51 ~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 474
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.99 E-value=0.26 Score=43.37 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHhCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEK 19 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~ 19 (265)
+|++|+|||||++.|.+..
T Consensus 137 ~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4899999999999999853
No 475
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.90 E-value=1.1 Score=44.07 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||+++..+.+.
T Consensus 197 ~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 197 IGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999999875
No 476
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.74 E-value=0.48 Score=35.71 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||++..+|...
T Consensus 30 ~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998764
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.72 E-value=0.42 Score=41.68 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHhCCCccc-cc--------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCC
Q 024586 1 MGKGGVGKSSTVNSIIGEKAVT-VS--------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE 55 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~~~~~-~~--------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~ 55 (265)
+|+||||||||...|...-... ++ ...-.|..+. ..+.+|.+..++|.-.+.+
T Consensus 9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~--~~E~~gvphhlid~~~~~e 70 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT--AEEMDGVPHHLIDIKDPSE 70 (322)
T ss_dssp ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC--HHHHTTCCEESSSCBCTTS
T ss_pred ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC--HHHHcCCCEEEeccCChhh
Confidence 4999999999999998643211 11 1122333332 3456777888888776654
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.68 E-value=0.42 Score=39.13 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 22 ~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 479
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.67 E-value=0.48 Score=38.98 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|.+|+||||+++.|...
T Consensus 32 ~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.63 E-value=0.46 Score=39.52 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+++.+|.+.
T Consensus 50 ~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp BCSSCSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999864
No 481
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.28 E-value=0.5 Score=39.22 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|.+|+||||+.+.|..
T Consensus 28 ~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=83.18 E-value=0.45 Score=41.55 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+...|...
T Consensus 11 ~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADA 28 (323)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998864
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.15 E-value=0.38 Score=39.16 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.6
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
+|++|+|||||+..++
T Consensus 29 ~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999977665
No 484
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.08 E-value=3.1 Score=34.92 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE-EEEeCccC
Q 024586 44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQL 122 (265)
Q Consensus 44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i-vV~tk~D~ 122 (265)
.+.|||||+..... +...... .+|.+++|++.+.... ..-...++.+.+. + .+++ +|+|+.|.
T Consensus 193 D~VIIDtpp~~~~~----d~~~l~~------~aD~vilVv~~~~~~~-~~~~~~~~~l~~~-~----~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 193 NFVIIDTPPVNTVT----DAQLFSK------FTGNVVYVVNSENNNK-DEVKKGKELIEAT-G----AKLLGVVLNRMPK 256 (271)
T ss_dssp SEEEEECCCTTTCS----HHHHHHH------HHCEEEEEEETTSCCH-HHHHHHHHHHHTT-T----CEEEEEEEEEECC
T ss_pred CEEEEeCCCCchHH----HHHHHHH------HCCEEEEEEeCCCCcH-HHHHHHHHHHHhC-C----CCEEEEEEeCCcC
Confidence 47999999975321 1111112 3589999977764321 2223344445432 1 3444 89999986
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.00 E-value=0.45 Score=41.82 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.|||||||+...|...
T Consensus 13 ~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAKK 30 (340)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCcCcHHHHHHHHHHH
Confidence 499999999999988753
No 486
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.97 E-value=0.39 Score=38.88 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|..
T Consensus 11 ~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999853
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.94 E-value=0.31 Score=45.35 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHHH
Q 024586 1 MGKGGVGKSSTVNSI 15 (265)
Q Consensus 1 vG~tg~GKSSliN~l 15 (265)
+|++|+|||||++.|
T Consensus 45 ~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQF 59 (525)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 599999999999995
No 488
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.79 E-value=0.48 Score=41.20 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|+||||||+|...|...
T Consensus 16 ~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 16 MGPTASGKTALAIELRKI 33 (316)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHh
Confidence 499999999999999754
No 489
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.54 E-value=0.44 Score=40.99 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||++++++.+.
T Consensus 43 ~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999999874
No 490
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.23 E-value=0.46 Score=41.26 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+||||+++.+.+.
T Consensus 52 ~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALARE 69 (340)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999875
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.96 E-value=0.43 Score=40.51 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHh
Q 024586 1 MGKGGVGKSSTVNSII 16 (265)
Q Consensus 1 vG~tg~GKSSliN~ll 16 (265)
.|.+||||||+.+.|.
T Consensus 81 ~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLK 96 (281)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999999987
No 492
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.89 E-value=0.41 Score=41.60 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+||||+++.+.+.
T Consensus 51 ~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999999874
No 493
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.53 E-value=0.51 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=16.2
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||++++++.+.
T Consensus 55 ~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 499999999999999874
No 494
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.18 E-value=0.49 Score=38.68 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
.|++|+|||+++.+|..
T Consensus 64 ~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 64 CGPANTGKSYFGMSFIH 80 (212)
T ss_dssp ESCGGGCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999988888765
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.13 E-value=0.58 Score=38.32 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHhC
Q 024586 1 MGKGGVGKSSTVNSIIG 17 (265)
Q Consensus 1 vG~tg~GKSSliN~llg 17 (265)
+|.+|+||||+.+.|.+
T Consensus 22 ~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ECSSCSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998875
No 496
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.03 E-value=0.47 Score=40.24 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|++|+|||+++.+|.+.
T Consensus 53 ~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp ESCSSSSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 499999999999998874
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.98 E-value=0.68 Score=39.88 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|++|+|||+|+.+|...
T Consensus 158 ~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 158 YGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.61 E-value=0.6 Score=39.81 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHhCC
Q 024586 2 GKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 2 G~tg~GKSSliN~llg~ 18 (265)
|++|+|||+++.++...
T Consensus 43 GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 43 GGKGQGKSFQCELVFRK 59 (293)
T ss_dssp ECTTSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999864
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.61 E-value=0.6 Score=42.02 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
+|.+|+||||+.+.|...
T Consensus 264 ~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp ESCTTSSHHHHHHHHTGG
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998764
No 500
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.41 E-value=0.71 Score=43.44 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHhCC
Q 024586 1 MGKGGVGKSSTVNSIIGE 18 (265)
Q Consensus 1 vG~tg~GKSSliN~llg~ 18 (265)
.|.||+|||+++|+|+-.
T Consensus 220 aG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 220 AGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998763
Done!