Query 024587
Match_columns 265
No_of_seqs 172 out of 1568
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1315 Predicted DHHC-type Zn 100.0 1.7E-46 3.7E-51 325.5 18.8 209 22-261 43-272 (307)
2 KOG1311 DHHC-type Zn-finger pr 100.0 1.5E-43 3.2E-48 313.0 16.9 206 28-258 56-278 (299)
3 KOG1314 DHHC-type Zn-finger pr 100.0 1.6E-42 3.4E-47 297.0 8.4 205 16-243 39-260 (414)
4 PF01529 zf-DHHC: DHHC palmito 100.0 4.4E-41 9.6E-46 274.8 10.3 159 40-226 2-174 (174)
5 KOG1313 DHHC-type Zn-finger pr 100.0 3.7E-39 7.9E-44 268.4 15.4 182 68-264 98-298 (309)
6 COG5273 Uncharacterized protei 100.0 1.1E-34 2.3E-39 255.2 17.9 116 29-144 60-181 (309)
7 KOG1312 DHHC-type Zn-finger pr 100.0 4.2E-34 9.2E-39 239.3 10.1 117 22-139 95-215 (341)
8 KOG0509 Ankyrin repeat and DHH 99.9 5.7E-28 1.2E-32 222.2 4.5 103 36-138 379-486 (600)
9 KOG1313 DHHC-type Zn-finger pr 97.1 0.0016 3.5E-08 55.7 6.7 194 32-240 75-273 (309)
10 COG5273 Uncharacterized protei 96.5 0.013 2.9E-07 52.1 8.3 62 82-143 105-177 (309)
11 KOG1311 DHHC-type Zn-finger pr 93.4 0.11 2.3E-06 46.1 4.3 41 86-126 113-164 (299)
12 PF01529 zf-DHHC: DHHC palmito 93.3 0.98 2.1E-05 36.2 9.6 60 70-140 60-119 (174)
13 PF13240 zinc_ribbon_2: zinc-r 93.2 0.053 1.1E-06 28.7 1.3 21 74-94 1-21 (23)
14 PF13248 zf-ribbon_3: zinc-rib 90.4 0.16 3.5E-06 27.6 1.2 22 73-94 3-24 (26)
15 PRK04136 rpl40e 50S ribosomal 89.9 0.22 4.7E-06 31.1 1.6 28 71-98 13-40 (48)
16 KOG1315 Predicted DHHC-type Zn 86.5 7.1 0.00015 34.7 9.6 49 85-133 108-167 (307)
17 PF12773 DZR: Double zinc ribb 86.2 0.89 1.9E-05 28.6 2.8 36 70-105 10-48 (50)
18 PF10571 UPF0547: Uncharacteri 85.0 0.65 1.4E-05 25.3 1.5 22 73-94 1-22 (26)
19 PF06906 DUF1272: Protein of u 82.9 0.61 1.3E-05 30.2 0.9 38 72-112 5-50 (57)
20 PTZ00303 phosphatidylinositol 77.4 1.7 3.6E-05 43.0 2.3 22 73-94 461-489 (1374)
21 PF12773 DZR: Double zinc ribb 73.6 3 6.5E-05 26.1 2.1 23 71-93 28-50 (50)
22 PF01020 Ribosomal_L40e: Ribos 72.5 1.9 4.2E-05 27.4 1.0 25 71-95 16-42 (52)
23 KOG0509 Ankyrin repeat and DHH 69.8 2 4.3E-05 41.2 0.9 91 40-132 292-384 (600)
24 PF09889 DUF2116: Uncharacteri 64.6 8.2 0.00018 25.4 2.7 24 71-94 2-26 (59)
25 KOG1314 DHHC-type Zn-finger pr 59.9 73 0.0016 28.9 8.6 96 31-137 59-159 (414)
26 COG1552 RPL40A Ribosomal prote 59.7 2.4 5.3E-05 26.6 -0.4 28 71-98 13-40 (50)
27 PF00641 zf-RanBP: Zn-finger i 59.1 3.2 6.9E-05 23.1 0.0 21 74-94 6-26 (30)
28 smart00064 FYVE Protein presen 53.9 11 0.00025 25.0 2.1 25 72-96 10-36 (68)
29 TIGR00155 pqiA_fam integral me 53.9 1.9E+02 0.004 26.9 12.7 34 69-102 212-246 (403)
30 COG2093 DNA-directed RNA polym 53.3 8.2 0.00018 25.6 1.3 23 72-94 4-26 (64)
31 cd00065 FYVE FYVE domain; Zinc 46.5 16 0.00035 23.2 1.9 23 73-95 3-27 (57)
32 KOG1842 FYVE finger-containing 46.4 6.2 0.00013 36.6 -0.2 26 71-96 179-206 (505)
33 PF01363 FYVE: FYVE zinc finge 45.3 5.6 0.00012 26.7 -0.5 25 72-96 9-35 (69)
34 PF07649 C1_3: C1-like domain; 45.0 7.1 0.00015 21.6 -0.0 21 74-94 2-23 (30)
35 smart00661 RPOL9 RNA polymeras 44.9 12 0.00026 23.4 1.1 9 74-82 2-10 (52)
36 PRK14559 putative protein seri 44.0 20 0.00044 35.3 2.9 35 71-107 14-48 (645)
37 KOG3183 Predicted Zn-finger pr 41.8 12 0.00026 31.8 0.9 15 94-108 36-50 (250)
38 smart00547 ZnF_RBZ Zinc finger 41.3 16 0.00034 19.3 1.0 21 74-94 4-24 (26)
39 PRK14559 putative protein seri 40.4 17 0.00037 35.8 1.8 27 72-98 27-53 (645)
40 PRK00432 30S ribosomal protein 40.3 12 0.00025 23.8 0.5 24 71-94 19-45 (50)
41 COG4640 Predicted membrane pro 36.2 19 0.00042 32.9 1.3 26 73-98 2-27 (465)
42 PF07010 Endomucin: Endomucin; 34.7 99 0.0021 26.3 5.1 26 31-56 200-225 (259)
43 PF09297 zf-NADH-PPase: NADH p 34.7 18 0.0004 20.3 0.6 23 72-94 3-29 (32)
44 PF07282 OrfB_Zn_ribbon: Putat 34.3 30 0.00064 23.1 1.7 25 71-95 27-55 (69)
45 PRK03681 hypA hydrogenase nick 34.2 20 0.00044 26.9 1.0 25 70-94 68-95 (114)
46 TIGR00155 pqiA_fam integral me 34.1 3.9E+02 0.0084 24.8 10.4 31 72-102 13-49 (403)
47 smart00423 PSI domain found in 29.2 22 0.00049 21.6 0.4 16 91-106 6-21 (46)
48 PF07754 DUF1610: Domain of un 28.7 43 0.00094 17.8 1.4 19 75-93 1-23 (24)
49 PF03107 C1_2: C1 domain; Int 28.6 40 0.00086 18.6 1.4 20 74-93 2-22 (30)
50 PRK15103 paraquat-inducible me 28.5 4.1E+02 0.009 24.8 8.8 99 75-207 13-117 (419)
51 PLN00186 ribosomal protein S26 27.0 28 0.00061 25.8 0.6 19 85-103 19-37 (109)
52 PRK09335 30S ribosomal protein 26.2 28 0.00061 25.2 0.5 21 85-105 19-39 (95)
53 KOG1710 MYND Zn-finger and ank 26.1 27 0.00059 30.8 0.5 22 71-94 318-339 (396)
54 KOG1729 FYVE finger containing 25.9 25 0.00055 31.0 0.3 26 73-98 169-197 (288)
55 PF08600 Rsm1: Rsm1-like; Int 25.8 36 0.00078 24.4 1.0 10 101-110 56-65 (91)
56 COG1852 Uncharacterized conser 25.2 39 0.00084 28.0 1.2 23 76-98 101-123 (209)
57 PRK14811 formamidopyrimidine-D 25.0 37 0.0008 29.6 1.2 16 71-86 254-269 (269)
58 PRK00464 nrdR transcriptional 24.4 40 0.00088 26.8 1.2 9 74-82 2-10 (154)
59 cd01995 ExsB ExsB is a transcr 24.3 24 0.00052 28.0 -0.1 24 73-99 141-164 (169)
60 PF12172 DUF35_N: Rubredoxin-l 24.1 21 0.00045 20.7 -0.4 22 72-93 11-32 (37)
61 PF14952 zf-tcix: Putative tre 24.1 52 0.0011 20.2 1.3 21 71-91 10-30 (44)
62 PTZ00172 40S ribosomal protein 24.0 32 0.00069 25.5 0.5 19 85-103 19-37 (108)
63 COG2888 Predicted Zn-ribbon RN 23.8 53 0.0011 21.6 1.4 37 72-108 9-49 (61)
64 PHA02942 putative transposase; 23.4 50 0.0011 30.4 1.8 24 71-94 324-350 (383)
65 KOG1398 Uncharacterized conser 23.3 21 0.00047 32.6 -0.6 29 81-115 9-37 (460)
66 PF01437 PSI: Plexin repeat; 23.2 13 0.00028 23.4 -1.5 17 90-106 6-22 (51)
67 COG2816 NPY1 NTP pyrophosphohy 22.5 49 0.0011 29.0 1.4 24 71-94 110-137 (279)
68 PF00539 Tat: Transactivating 22.5 2E+02 0.0043 19.5 4.0 7 86-92 36-42 (68)
69 PRK12286 rpmF 50S ribosomal pr 22.3 65 0.0014 21.0 1.7 23 70-94 25-48 (57)
70 PF04161 Arv1: Arv1-like famil 21.4 35 0.00075 28.5 0.3 14 85-98 23-36 (208)
71 KOG3611 Semaphorins [Signal tr 21.1 35 0.00075 34.3 0.2 37 86-122 491-535 (737)
72 PRK13130 H/ACA RNA-protein com 20.8 52 0.0011 21.4 0.9 21 72-94 5-25 (56)
73 PF12760 Zn_Tnp_IS1595: Transp 20.7 65 0.0014 19.7 1.3 22 73-94 19-45 (46)
74 PRK00241 nudC NADH pyrophospha 20.5 55 0.0012 28.3 1.3 24 71-94 98-125 (256)
75 KOG4399 C2HC-type Zn-finger pr 20.4 17 0.00037 31.3 -1.7 14 72-85 261-274 (325)
76 KOG1819 FYVE finger-containing 20.4 33 0.00071 32.5 -0.1 23 72-94 901-925 (990)
77 KOG1818 Membrane trafficking a 20.2 41 0.00089 32.9 0.5 23 72-94 165-189 (634)
No 1
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=325.51 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC---CCC-------------CCCCccccccccccCCCCCC
Q 024587 22 FCGIFHLVIAICLSVSTLSMFCLAAFHCPGASPLVLWGSYP---LVG-------------KGDLENYTFCHYCSKPKSPR 85 (265)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~dPG~~p~~~~~~~~---~~~-------------~~~~~~~~~C~~C~~~kP~R 85 (265)
....+.++++..++++.+.+|.+++++|||.+|.....+.+ ..+ .+.....|+|.+|+..||+|
T Consensus 43 ~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdR 122 (307)
T KOG1315|consen 43 IPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDR 122 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCcccccceeeEecCCCCceeecccccccCCc
Confidence 45567778888999999999999999999999963211110 001 11122679999999999999
Q ss_pred CCCCCCCCcccCCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccCcchhHH
Q 024587 86 THHCRSCGMCVLDMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPLSIRSHAPSNVVGTDLAMR 165 (265)
Q Consensus 86 s~HC~~C~~CV~r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (265)
||||++|+|||+||||||||+|||||.+|||+|++|++|..+.+++.++.....+...+..... ++.
T Consensus 123 aHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~~-----------~~~-- 189 (307)
T KOG1315|consen 123 AHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGAG-----------PSS-- 189 (307)
T ss_pred cccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------Cch--
Confidence 9999999999999999999999999999999999999999999999988887776665522100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCC--CCchh---hHHHH
Q 024587 166 FVKEIIIALLNSALLMSSRGLLLVYLFVSSISVNLGLSVLLWQQLFYIYEGKTYLSHLNSQGGDG--ADQKD---CQNIL 240 (265)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~~~l~li~~n~Tt~E~~~~~~~~~--~~~~~---~~N~~ 240 (265)
.......++++.+..+.+.++.++++|+++|.+|+||+|..+.+.... ++++. ..|++
T Consensus 190 -----------------~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~~~~~~~~~~n~~ 252 (307)
T KOG1315|consen 190 -----------------LLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLHNKNGFNLYVNFR 252 (307)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccccccccccCCcceeecHH
Confidence 001123334455556667777899999999999999999988753221 33333 35999
Q ss_pred hhcCCCCcceeeecccCCCcc
Q 024587 241 RFFGCPYSVSRYLPVVRDSEK 261 (265)
Q Consensus 241 ~vfG~~~~~~w~~P~~~~~~~ 261 (265)
|+||.++ ..|++|..+..++
T Consensus 253 ~vfg~~~-~~wl~P~~~s~~~ 272 (307)
T KOG1315|consen 253 EVFGSNL-LYWLLPIDSSWGD 272 (307)
T ss_pred HHhCCCc-eEEeccccCcccc
Confidence 9999987 8999999766654
No 2
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=1.5e-43 Score=312.96 Aligned_cols=206 Identities=27% Similarity=0.449 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCCCC----------CCCCCCccccccccccCCCCCCCCCCCCCCc
Q 024587 28 LVIAICLSVSTLSMFCLAAFH---CPGASPLVLWGSYPL----------VGKGDLENYTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~---dPG~~p~~~~~~~~~----------~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.....++.+..+.....+..+ |||.+|+......+. .+++...++++|.+|+..||||||||++||+
T Consensus 56 ~~~~~if~~~~~~~~~~~~~~~~sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~ 135 (299)
T KOG1311|consen 56 LVLGAIFFLLNILNLMLACFRMLSDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNN 135 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcc
Confidence 344445555555555555555 999999842111111 1123344689999999999999999999999
Q ss_pred ccCCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccCcchhHHHHHHHHHHH
Q 024587 95 CVLDMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPLSIRSHAPSNVVGTDLAMRFVKEIIIAL 174 (265)
Q Consensus 95 CV~r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (265)
||+||||||||+|||||++|||||++|+++.++++++.+....+.......+.... +...
T Consensus 136 CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~-------------~~~~------- 195 (299)
T KOG1311|consen 136 CVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVN-------------LTPV------- 195 (299)
T ss_pred cccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------------cccc-------
Confidence 99999999999999999999999999999999999998888776655433322110 1000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeEEeccc----CCCCCCCchhhHHHHhhcCCCCcce
Q 024587 175 LNSALLMSSRGLLLVYLFVSSISVNLGLSVLLWQQLFYIYEGKTYLSHLNS----QGGDGADQKDCQNILRFFGCPYSVS 250 (265)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~~~l~li~~n~Tt~E~~~~----~~~~~~~~~~~~N~~~vfG~~~~~~ 250 (265)
.........+++.+.++.....++.|+.+|++++.+|+||+|+.++ .+.+++++|.++|++++||.+....
T Consensus 196 -----~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~ 270 (299)
T KOG1311|consen 196 -----LIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLLKNLQEVFGGPLPLS 270 (299)
T ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhccccccccCCCchhHHHHHHHHhCCCCCcc
Confidence 0000011223334556666777789999999999999999999774 2236788888899999999999999
Q ss_pred eeecccCC
Q 024587 251 RYLPVVRD 258 (265)
Q Consensus 251 w~~P~~~~ 258 (265)
|+.|..+.
T Consensus 271 ~~~p~~~~ 278 (299)
T KOG1311|consen 271 WLSPFARS 278 (299)
T ss_pred cccccccC
Confidence 99998765
No 3
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.6e-42 Score=297.01 Aligned_cols=205 Identities=31% Similarity=0.474 Sum_probs=146.8
Q ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCCcc
Q 024587 16 VFSVSYFCGIFHLVIAICLSVSTLSMFCLAAFHCPGASPLVLWGSYPLVGKGDLENYTFCHYCSKPKSPRTHHCRSCGMC 95 (265)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~dPG~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~C 95 (265)
++..+++.+..+.+.+.....+.+.+|+.+++++||.+|.. + .+....+....+||.+|+.+|+||||||+.||||
T Consensus 39 w~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~-w---kPe~~~D~~~lqfCk~CqgYKapRSHHCrkCnrC 114 (414)
T KOG1314|consen 39 WFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLG-W---KPENPKDEMFLQFCKKCQGYKAPRSHHCRKCNRC 114 (414)
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-C---CCCCChhHHHHHHHhhccCcCCCccccchHHHHH
Confidence 45677888999999999999999999999999999999973 2 2221223335689999999999999999999999
Q ss_pred cCCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccCcchhHHHHHHHHHHHH
Q 024587 96 VLDMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPLSIRSHAPSNVVGTDLAMRFVKEIIIALL 175 (265)
Q Consensus 96 V~r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (265)
|.+|||||||+|||||..||.||+.||++..++|+-..+....+.++......+...+.-+. .
T Consensus 115 vmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hl----------p------- 177 (414)
T KOG1314|consen 115 VMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHL----------P------- 177 (414)
T ss_pred HHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccC----------c-------
Confidence 99999999999999999999999999999999887766554444333221111100000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeEEecccC----------------CCCCCCchhhH-H
Q 024587 176 NSALLMSSRGLLLVYLFVSSISVNLGLSVLLWQQLFYIYEGKTYLSHLNSQ----------------GGDGADQKDCQ-N 238 (265)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~~~l~li~~n~Tt~E~~~~~----------------~~~~~~~~~~~-N 238 (265)
+.++.....+.+++.+-+++.+.+++++|+..|+..|.+|+|.+|.+..+ -.-+++.| |+ |
T Consensus 178 -~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlg-Wr~n 255 (414)
T KOG1314|consen 178 -IVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLG-WRIN 255 (414)
T ss_pred -eeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeecccc-cccc
Confidence 00011111123344445556667788999999999999999999965311 01135666 87 9
Q ss_pred HHhhc
Q 024587 239 ILRFF 243 (265)
Q Consensus 239 ~~~vf 243 (265)
+++||
T Consensus 256 ~r~vf 260 (414)
T KOG1314|consen 256 LREVF 260 (414)
T ss_pred HHHHh
Confidence 99998
No 4
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=4.4e-41 Score=274.82 Aligned_cols=159 Identities=31% Similarity=0.586 Sum_probs=120.3
Q ss_pred HHHHHHhhcCCCCCCCCCC---------CC-----CCCCCCCCCccccccccccCCCCCCCCCCCCCCcccCCCcccccc
Q 024587 40 SMFCLAAFHCPGASPLVLW---------GS-----YPLVGKGDLENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPF 105 (265)
Q Consensus 40 ~~~~~~~~~dPG~~p~~~~---------~~-----~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w 105 (265)
.+|++++++|||++|+.+. +. .+..+++..+..++|.+|+..||+|||||+.||+||+|+||||+|
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w 81 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW 81 (174)
T ss_pred EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence 4788999999999998610 00 011223345578999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 024587 106 IGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPLSIRSHAPSNVVGTDLAMRFVKEIIIALLNSALLMSSRG 185 (265)
Q Consensus 106 i~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (265)
+|||||++|||+|++|+++..+++++.+..++..+........... .+... .
T Consensus 82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----------------~ 133 (174)
T PF01529_consen 82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSS-----------FWIFS-----------------N 133 (174)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------cccch-----------------h
Confidence 9999999999999999999999999988877766665433221100 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeEEecccC
Q 024587 186 LLLVYLFVSSISVNLGLSVLLWQQLFYIYEGKTYLSHLNSQ 226 (265)
Q Consensus 186 ~~~i~~~~~~~~~~i~~~~l~~~~l~li~~n~Tt~E~~~~~ 226 (265)
...+++++.++..+++++.++..|++++++|+||+|.+++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~ 174 (174)
T PF01529_consen 134 FSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKRK 174 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHcC
Confidence 00133445556667778899999999999999999998764
No 5
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=3.7e-39 Score=268.39 Aligned_cols=182 Identities=35% Similarity=0.591 Sum_probs=126.0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcccCCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 024587 68 DLENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPL 147 (265)
Q Consensus 68 ~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~ 147 (265)
..++..+|.+|+.+||||+||||.|||||+||||||||+|||||..|||||++|++|+++++.|..++..+...+.....
T Consensus 98 ~~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~ 177 (309)
T KOG1313|consen 98 GLENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPI 177 (309)
T ss_pred CCccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 44567899999999999999999999999999999999999999999999999999999999999888776555443322
Q ss_pred cccCCCCC-----CccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeEEe
Q 024587 148 SIRSHAPS-----NVVGTDLAMRFVKEIIIALLNSALLMSSRGLLLVYLFVSSISVNLGLSVLLWQQLFYIYEGKTYLSH 222 (265)
Q Consensus 148 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~~~l~li~~n~Tt~E~ 222 (265)
.. ...+ +.-+....-+.... +.......+.+.+..+++.++.+..+|..+|.+|.|++|.
T Consensus 178 ~~--~tay~~d~~h~~Pp~~i~r~~~~-------------i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~ 242 (309)
T KOG1313|consen 178 EE--ITAYASDVAHVAPPPSILRVYKN-------------ITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQ 242 (309)
T ss_pred hh--cccccCcccccCCChhhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHH
Confidence 11 1111 10000001111111 1111222344555556777889999999999999999995
Q ss_pred cccC----------CCCCCCchhhHHHHhhcC---CC-CcceeeecccCCCccccC
Q 024587 223 LNSQ----------GGDGADQKDCQNILRFFG---CP-YSVSRYLPVVRDSEKRHT 264 (265)
Q Consensus 223 ~~~~----------~~~~~~~~~~~N~~~vfG---~~-~~~~w~~P~~~~~~~~~~ 264 (265)
.... +.++.+.|..+||+.++| .| .+..-++|..+.+.+++|
T Consensus 243 ~~~~~e~k~~~a~~R~~~~n~g~k~nWr~fLg~~~~r~~wk~v~lPt~~~p~~~~~ 298 (309)
T KOG1313|consen 243 LINIKERKRYLAHLRSNPTNFGGKANWRNFLGLFRGRHFWKTVLLPTIRKPVKYGD 298 (309)
T ss_pred HHHHHHhHhHHHhccCCCcccchHHHHHHhhccccCCceeEEEeccccccccccCC
Confidence 5332 234456666556665554 44 324558999988888765
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=255.19 Aligned_cols=116 Identities=32% Similarity=0.614 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-C-----CCCCCCCCCCccccccccccCCCCCCCCCCCCCCcccCCCccc
Q 024587 29 VIAICLSVSTLSMFCLAAFHCPGASPLVLW-G-----SYPLVGKGDLENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHH 102 (265)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~dPG~~p~~~~-~-----~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHH 102 (265)
+...+....+..+++....+|||..+.... . ..+....+.....++|.+|+.+||+|||||+.|||||+|||||
T Consensus 60 i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHH 139 (309)
T COG5273 60 ILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHH 139 (309)
T ss_pred hhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcchhhccCcc
Confidence 334455567788999999999999984211 1 1122334555678999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024587 103 CPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIW 144 (265)
Q Consensus 103 C~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~ 144 (265)
|+|+|||||.+|||+|++|+++....+++.+....+......
T Consensus 140 C~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~ 181 (309)
T COG5273 140 CPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIF 181 (309)
T ss_pred CcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988888777666555443
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=4.2e-34 Score=239.34 Aligned_cols=117 Identities=30% Similarity=0.527 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCCCccccccccccCCCCCCCCCCCCCCcccC
Q 024587 22 FCGIFHLVIAICLSVSTLSMFCLAAFHCPGASPLVLWGS----YPLVGKGDLENYTFCHYCSKPKSPRTHHCRSCGMCVL 97 (265)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~dPG~~p~~~~~~----~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 97 (265)
..+..+.+....+.+...+++.+++.+|||.+...++.. ||.++ ........|++|+.+||+||||||.|||||.
T Consensus 95 ~lsl~~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYDy-~if~k~~kCSTCki~KPARSKHCsiCNrCV~ 173 (341)
T KOG1312|consen 95 ELSLHYLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHVYPYDY-VIFPKNVKCSTCKIRKPARSKHCSICNRCVH 173 (341)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceeccCccc-eeecCCCccccccCCCccccccchHHHHHHH
Confidence 456788888888888999999999999999999876643 33222 2233458999999999999999999999999
Q ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024587 98 DMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTA 139 (265)
Q Consensus 98 r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~ 139 (265)
|+||||.|+|||||++|.|||++|+++...++.|+.+-..+.
T Consensus 174 rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi 215 (341)
T KOG1312|consen 174 RFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFI 215 (341)
T ss_pred HhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999888887765554
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.94 E-value=5.7e-28 Score=222.22 Aligned_cols=103 Identities=33% Similarity=0.672 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCC----CCCCCCCCccc-cccccccCCCCCCCCCCCCCCcccCCCccccccccccc
Q 024587 36 VSTLSMFCLAAFHCPGASPLVLWGSY----PLVGKGDLENY-TFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPFIGNCV 110 (265)
Q Consensus 36 ~~~~~~~~~~~~~dPG~~p~~~~~~~----~~~~~~~~~~~-~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~wi~nCI 110 (265)
+..++++.+..-+|||.+|..+.... +..+.+..+.. ++|.+|..+||.|||||++|||||.|+||||||++|||
T Consensus 379 l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncV 458 (600)
T KOG0509|consen 379 LAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCV 458 (600)
T ss_pred HHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCcccccc
Confidence 44445556666699999997544322 22333444445 69999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 024587 111 GAANHRYFILFLISAVVSTIYVAIMSVT 138 (265)
Q Consensus 111 G~~N~r~F~~fl~~~~l~~~~~~~~~~~ 138 (265)
|.+|||+|+.|++.....+.+.+....+
T Consensus 459 G~kNh~~F~~Fl~~l~~~~~~~l~~~~~ 486 (600)
T KOG0509|consen 459 GLKNHRLFVFFLLTLLTVIVFYLYLCLY 486 (600)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877776655443
No 9
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=97.09 E-value=0.0016 Score=55.69 Aligned_cols=194 Identities=20% Similarity=0.203 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-CCCCCccccccccccCCCCCCCCCCCCCCcccCCCccccccccccc
Q 024587 32 ICLSVSTLSMFCLAAFHCPGASPLVLWGSYPLV-GKGDLENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPFIGNCV 110 (265)
Q Consensus 32 ~~l~~~~~~~~~~~~~~dPG~~p~~~~~~~~~~-~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~wi~nCI 110 (265)
..+...+...|+++..+.|=..|..+....=.. ..-..++...|+.|+.-.-.=-|||.-=|.||.-..|
T Consensus 75 i~~l~nvi~hy~ka~t~pPvgn~~~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NH--------- 145 (309)
T KOG1313|consen 75 IYLLSNVIFHYYKARTKPPVGNPGLENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNH--------- 145 (309)
T ss_pred HHHHHHHHHhheeecccCCcCCCCCccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccc---------
Confidence 344555556666666665522222111100000 0112245678999988888889999999999998887
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cCCCCCCccCcchhHH-HHHHHHHHHHHHHHHHHHHHH
Q 024587 111 GAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPLSI---RSHAPSNVVGTDLAMR-FVKEIIIALLNSALLMSSRGL 186 (265)
Q Consensus 111 G~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (265)
+=.=.|+.++.-....+.++...+..-....+.+... +.....+...-..... +.-+-+. ...+++....
T Consensus 146 --ryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~tay~~d~~h~~Pp~~i~r~~~~i~~t~~~----~~~fls~~~l 219 (309)
T KOG1313|consen 146 --RYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEITAYASDVAHVAPPPSILRVYKNITRTSIA----NLWFLSVRVL 219 (309)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcccccCcccccCCChhhhhhhhhhhHHHHH----HHHHHHHHHH
Confidence 5566788888766666666644333332222222110 0000000000010011 1111000 1122232223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCCchhhHHHH
Q 024587 187 LLVYLFVSSISVNLGLSVLLWQQLFYIYEGKTYLSHLNSQGGDGADQKDCQNIL 240 (265)
Q Consensus 187 ~~i~~~~~~~~~~i~~~~l~~~~l~li~~n~Tt~E~~~~~~~~~~~~~~~~N~~ 240 (265)
+++..++.-.+.++..|...+.++.++..++++..+.+++..+...+..|+|+.
T Consensus 220 v~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~~n~g~k~nWr~fL 273 (309)
T KOG1313|consen 220 VAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNPTNFGGKANWRNFL 273 (309)
T ss_pred HHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCCcccchHHHHHHhh
Confidence 334444555566778889999999999999999988888888888888898875
No 10
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=96.51 E-value=0.013 Score=52.08 Aligned_cols=62 Identities=18% Similarity=0.394 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCcccCCCcccccccccccccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024587 82 KSPRTHHCRSCGMCVLDMDHHCPFIGNCVGAA-----------NHRYFILFLISAVVSTIYVAIMSVTAGLHI 143 (265)
Q Consensus 82 kP~Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~-----------N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~ 143 (265)
+-.+.+.|+.|+.-...+-|||.--|.||-+. ..|..=.|..++.......+.+.....+..
T Consensus 105 ~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~ 177 (309)
T COG5273 105 KFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYI 177 (309)
T ss_pred ccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999776 357888999888777666665554444443
No 11
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=93.38 E-value=0.11 Score=46.06 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=35.2
Q ss_pred CCCCCCCCcccCCCccccccccccccccc-----------HHHHHHHHHHHH
Q 024587 86 THHCRSCGMCVLDMDHHCPFIGNCVGAAN-----------HRYFILFLISAV 126 (265)
Q Consensus 86 s~HC~~C~~CV~r~DHHC~wi~nCIG~~N-----------~r~F~~fl~~~~ 126 (265)
.++|..|+..+..+-|||..-|+||-+.= +|.+-.|+.++.
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 78999999999999999999999998773 688889996555
No 12
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=93.29 E-value=0.98 Score=36.20 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=38.3
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024587 70 ENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAG 140 (265)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~ 140 (265)
++.++|+.|+.-...+-|||..-+.||.+..| +..-.|+.+..-..+..++.....+...
T Consensus 60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~~ 119 (174)
T PF01529_consen 60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLYYLVRY 119 (174)
T ss_pred CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777666 3455666665555555555444444433
No 13
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=93.22 E-value=0.053 Score=28.67 Aligned_cols=21 Identities=24% Similarity=0.830 Sum_probs=18.9
Q ss_pred ccccccCCCCCCCCCCCCCCc
Q 024587 74 FCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 74 ~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
+|++|....++.++.|+.|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 699999999999999999985
No 14
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=90.41 E-value=0.16 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.940 Sum_probs=19.4
Q ss_pred cccccccCCCCCCCCCCCCCCc
Q 024587 73 TFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 73 ~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
++|+.|....++.++.|+.|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 6899999988999999999875
No 15
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=89.88 E-value=0.22 Score=31.15 Aligned_cols=28 Identities=32% Similarity=0.679 Sum_probs=23.7
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCC
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
....|..|..+-|+|+..|+.|+.=-+|
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 40 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGYKNLR 40 (48)
T ss_pred cccchhcccCCCCccccccccCCCCCcC
Confidence 4689999999999999999999874333
No 16
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=86.52 E-value=7.1 Score=34.72 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=38.2
Q ss_pred CCCCCCCCCcccCCCcccccccccccccc-----------cHHHHHHHHHHHHHHHHHHH
Q 024587 85 RTHHCRSCGMCVLDMDHHCPFIGNCVGAA-----------NHRYFILFLISAVVSTIYVA 133 (265)
Q Consensus 85 Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~-----------N~r~F~~fl~~~~l~~~~~~ 133 (265)
+.+.|.+|+.-...+-|||.=-+.||.+. +.+.+=.|+.++.-+.++..
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~ 167 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSI 167 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHH
Confidence 78889999999999999999999998886 45677778777755555443
No 17
>PF12773 DZR: Double zinc ribbon
Probab=86.20 E-value=0.89 Score=28.58 Aligned_cols=36 Identities=25% Similarity=0.636 Sum_probs=26.1
Q ss_pred ccccccccccCCCC---CCCCCCCCCCcccCCCcccccc
Q 024587 70 ENYTFCHYCSKPKS---PRTHHCRSCGMCVLDMDHHCPF 105 (265)
Q Consensus 70 ~~~~~C~~C~~~kP---~Rs~HC~~C~~CV~r~DHHC~w 105 (265)
++.++|++|....+ .....|+.|++=+...+.+|+.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 34678888887776 3356788888877777777764
No 18
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=84.97 E-value=0.65 Score=25.27 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=19.4
Q ss_pred cccccccCCCCCCCCCCCCCCc
Q 024587 73 TFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 73 ~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
+.|+.|....|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4699999999999999998875
No 19
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=82.87 E-value=0.61 Score=30.16 Aligned_cols=38 Identities=34% Similarity=0.838 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCC-------CCCCCCCcccCCC-ccccccccccccc
Q 024587 72 YTFCHYCSKPKSPRT-------HHCRSCGMCVLDM-DHHCPFIGNCVGA 112 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs-------~HC~~C~~CV~r~-DHHC~wi~nCIG~ 112 (265)
..-|..|+..-|+-| +-|..|..|+..+ +++|| ||=|+
T Consensus 5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 345888888888776 6699999999999 99998 67664
No 20
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=77.40 E-value=1.7 Score=42.96 Aligned_cols=22 Identities=45% Similarity=1.088 Sum_probs=18.5
Q ss_pred cccccccCCCC-------CCCCCCCCCCc
Q 024587 73 TFCHYCSKPKS-------PRTHHCRSCGM 94 (265)
Q Consensus 73 ~~C~~C~~~kP-------~Rs~HC~~C~~ 94 (265)
+.|..|+..-. .|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 56999998775 39999999987
No 21
>PF12773 DZR: Double zinc ribbon
Probab=73.57 E-value=3 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.865 Sum_probs=20.8
Q ss_pred cccccccccCCCCCCCCCCCCCC
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCG 93 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~ 93 (265)
...+|+.|....++.+++|..|+
T Consensus 28 ~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 28 SKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCcCCcCCCcCCcCccCccc
Confidence 45799999999999999999986
No 22
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=72.50 E-value=1.9 Score=27.42 Aligned_cols=25 Identities=32% Similarity=0.854 Sum_probs=16.9
Q ss_pred cccccccccCCCCCCCCCCCC--CCcc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRS--CGMC 95 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 95 (265)
+...|.+|..+-|+|+-.|+. ||++
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 457899999999999999998 8764
No 23
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=69.83 E-value=2 Score=41.25 Aligned_cols=91 Identities=13% Similarity=0.015 Sum_probs=61.0
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCC--CCCccccccccccCCCCCCCCCCCCCCcccCCCcccccccccccccccHHH
Q 024587 40 SMFCLAAFHCPGASPLVLWGSYPLVGK--GDLENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPFIGNCVGAANHRY 117 (265)
Q Consensus 40 ~~~~~~~~~dPG~~p~~~~~~~~~~~~--~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~N~r~ 117 (265)
.-.+..+..+||++--... ..-.... ....-...|.+|....+.+..++..+-.++..+++||+|+. +|+.+|..-
T Consensus 292 ~~~~~~~~~~~g~i~~~~~-~w~i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~ 369 (600)
T KOG0509|consen 292 GLFYFISSWLPGVIFLINS-LWLIKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFD 369 (600)
T ss_pred HHHHHHHhhccchhhhhhh-HHHHhhhhhhhhhhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhh
Confidence 3344455677887665331 1100000 11123467899999999999999999999999999999999 999999876
Q ss_pred HHHHHHHHHHHHHHH
Q 024587 118 FILFLISAVVSTIYV 132 (265)
Q Consensus 118 F~~fl~~~~l~~~~~ 132 (265)
+-...+..++..++.
T Consensus 370 ~~~~~i~~~l~~~~~ 384 (600)
T KOG0509|consen 370 FHYCFIISVLAYFIT 384 (600)
T ss_pred hHHHHHHHHHHHHHH
Confidence 554444444433333
No 24
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=64.62 E-value=8.2 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.750 Sum_probs=19.7
Q ss_pred cccccccccCCCCCCCCCCC-CCCc
Q 024587 71 NYTFCHYCSKPKSPRTHHCR-SCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~-~C~~ 94 (265)
..+.|..|+...|+--..|| .|+.
T Consensus 2 ~HkHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CCCcCCcCCCcCCcchhhhCHHHHH
Confidence 35789999999999999996 6665
No 25
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=59.89 E-value=73 Score=28.90 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC-----CCCCCCccccccccccCCCCCCCCCCCCCCcccCCCcccccc
Q 024587 31 AICLSVSTLSMFCLAAFHCPGASPLVLWGSYPL-----VGKGDLENYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPF 105 (265)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~dPG~~p~~~~~~~~~-----~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w 105 (265)
+.++.-...+.+.=-=+..||.-|....++.-. =..-..++...|++|++-.-.=-|||.--+.||.-..|
T Consensus 59 ~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh---- 134 (414)
T KOG1314|consen 59 SMILYNYFNAIFTGPGFVPLGWKPENPKDEMFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANH---- 134 (414)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhccccccc----
Confidence 333333334444444578899988643321100 01112346789999998888889999999999987666
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 024587 106 IGNCVGAANHRYFILFLISAVVSTIYVAIMSV 137 (265)
Q Consensus 106 i~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~ 137 (265)
.-.-+|++|.....+-...+++.+.
T Consensus 135 -------~~F~~FLlf~ivG~ih~tiI~~~~~ 159 (414)
T KOG1314|consen 135 -------AYFLRFLLFSIVGCIHGTIILVCAQ 159 (414)
T ss_pred -------HHHHHHHHHHHHhcccceeeehhHH
Confidence 4568999999886555444444443
No 26
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=59.67 E-value=2.4 Score=26.58 Aligned_cols=28 Identities=36% Similarity=0.818 Sum_probs=23.3
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCC
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
+.+.|..|...-|+|+.-|+.|+.=-+|
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~k~LR 40 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGYKNLR 40 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccCCCcc
Confidence 4688999999999999999988764433
No 27
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=59.15 E-value=3.2 Score=23.10 Aligned_cols=21 Identities=24% Similarity=0.667 Sum_probs=14.6
Q ss_pred ccccccCCCCCCCCCCCCCCc
Q 024587 74 FCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 74 ~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.|+.|...-++++.+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 578888888888888888764
No 28
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=53.85 E-value=1.9e+02 Score=26.88 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=24.4
Q ss_pred CccccccccccC-CCCCCCCCCCCCCcccCCCccc
Q 024587 69 LENYTFCHYCSK-PKSPRTHHCRSCGMCVLDMDHH 102 (265)
Q Consensus 69 ~~~~~~C~~C~~-~kP~Rs~HC~~C~~CV~r~DHH 102 (265)
.++..-|+.|+. .+|....+|..|+.-..|..++
T Consensus 212 ~~~~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 212 PLKLRSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred ccCCCcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 344567999998 4555567899998877766554
No 30
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=53.34 E-value=8.2 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.8
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.+-|..|+...|+.+.-|.+|+.
T Consensus 4 ~kAC~~Ck~l~~~d~e~CP~Cgs 26 (64)
T COG2093 4 EKACKNCKRLTPEDTEICPVCGS 26 (64)
T ss_pred hHHHhhccccCCCCCccCCCCCC
Confidence 46799999999999999999987
No 31
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=46.49 E-value=16 Score=23.21 Aligned_cols=23 Identities=43% Similarity=0.977 Sum_probs=14.3
Q ss_pred cccccccC--CCCCCCCCCCCCCcc
Q 024587 73 TFCHYCSK--PKSPRTHHCRSCGMC 95 (265)
Q Consensus 73 ~~C~~C~~--~kP~Rs~HC~~C~~C 95 (265)
+.|..|+. ..-.|.|||+.|++-
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~ 27 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRI 27 (57)
T ss_pred CcCcccCccccCCccccccCcCcCC
Confidence 34555543 234578888888874
No 32
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=46.39 E-value=6.2 Score=36.56 Aligned_cols=26 Identities=38% Similarity=0.951 Sum_probs=20.1
Q ss_pred cccccccccCCC--CCCCCCCCCCCccc
Q 024587 71 NYTFCHYCSKPK--SPRTHHCRSCGMCV 96 (265)
Q Consensus 71 ~~~~C~~C~~~k--P~Rs~HC~~C~~CV 96 (265)
...+|+.|...- -.|-|||+.||+-+
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~Vm 206 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVM 206 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHH
Confidence 468999997643 45789999999844
No 33
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=45.26 E-value=5.6 Score=26.65 Aligned_cols=25 Identities=44% Similarity=0.887 Sum_probs=12.0
Q ss_pred ccccccccCCC--CCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKPK--SPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~k--P~Rs~HC~~C~~CV 96 (265)
...|..|+..= -.|-|||+.||+.|
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 46777776532 46899999999854
No 34
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=45.03 E-value=7.1 Score=21.64 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=8.6
Q ss_pred ccccccCCCCC-CCCCCCCCCc
Q 024587 74 FCHYCSKPKSP-RTHHCRSCGM 94 (265)
Q Consensus 74 ~C~~C~~~kP~-Rs~HC~~C~~ 94 (265)
.|..|+..... ...+|+.|+-
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp --TTTS----S--EEE-TTT--
T ss_pred cCCcCCCcCCCCceEECccCCC
Confidence 57777777766 7788888764
No 35
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=44.89 E-value=12 Score=23.37 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=4.6
Q ss_pred ccccccCCC
Q 024587 74 FCHYCSKPK 82 (265)
Q Consensus 74 ~C~~C~~~k 82 (265)
||+.|+...
T Consensus 2 FCp~Cg~~l 10 (52)
T smart00661 2 FCPKCGNML 10 (52)
T ss_pred CCCCCCCcc
Confidence 555554443
No 36
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.01 E-value=20 Score=35.34 Aligned_cols=35 Identities=34% Similarity=0.768 Sum_probs=17.5
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCcccccccc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGMCVLDMDHHCPFIG 107 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~wi~ 107 (265)
+.+||+.|...-+ .+.|..|+.=+..-..+|+=-|
T Consensus 14 ~akFC~~CG~~l~--~~~Cp~CG~~~~~~~~fC~~CG 48 (645)
T PRK14559 14 NNRFCQKCGTSLT--HKPCPQCGTEVPVDEAHCPNCG 48 (645)
T ss_pred CCccccccCCCCC--CCcCCCCCCCCCcccccccccC
Confidence 3455555554332 2345555555555555555333
No 37
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=41.79 E-value=12 Score=31.79 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=11.4
Q ss_pred cccCCCccccccccc
Q 024587 94 MCVLDMDHHCPFIGN 108 (265)
Q Consensus 94 ~CV~r~DHHC~wi~n 108 (265)
.=..+.+|||||...
T Consensus 36 eHrsye~H~Cp~~~~ 50 (250)
T KOG3183|consen 36 EHRSYESHHCPKGLR 50 (250)
T ss_pred ccchHhhcCCCcccc
Confidence 346788999999753
No 38
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=41.35 E-value=16 Score=19.30 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=16.5
Q ss_pred ccccccCCCCCCCCCCCCCCc
Q 024587 74 FCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 74 ~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.|..|.....+++..|..|+.
T Consensus 4 ~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 4 ECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred cCCCCCCcChhhhccccccCC
Confidence 478888888888888888764
No 39
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=40.38 E-value=17 Score=35.83 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.6
Q ss_pred ccccccccCCCCCCCCCCCCCCcccCC
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
.+.|+.|....|+.+++|..||.=..+
T Consensus 27 ~~~Cp~CG~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 27 HKPCPQCGTEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCcCCCCCCCCCcccccccccCCcccc
Confidence 368999999999999999999998776
No 40
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=40.34 E-value=12 Score=23.77 Aligned_cols=24 Identities=29% Similarity=0.749 Sum_probs=14.7
Q ss_pred cccccccccC-CCC--CCCCCCCCCCc
Q 024587 71 NYTFCHYCSK-PKS--PRTHHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~-~kP--~Rs~HC~~C~~ 94 (265)
..++|+.|.. ... ....+|..|+.
T Consensus 19 ~~~fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 19 KNKFCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred ccCcCcCCCcchheccCCcEECCCcCC
Confidence 4579999977 221 23556777653
No 41
>COG4640 Predicted membrane protein [Function unknown]
Probab=36.24 E-value=19 Score=32.92 Aligned_cols=26 Identities=27% Similarity=0.701 Sum_probs=22.5
Q ss_pred cccccccCCCCCCCCCCCCCCcccCC
Q 024587 73 TFCHYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 73 ~~C~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
++|+.|...+-+.+..|..||+=+-.
T Consensus 2 ~fC~kcG~qk~Ed~~qC~qCG~~~t~ 27 (465)
T COG4640 2 KFCPKCGSQKAEDDVQCTQCGHKFTS 27 (465)
T ss_pred CcccccccccccccccccccCCcCCc
Confidence 68999999999999999999985544
No 42
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=34.66 E-value=99 Score=26.25 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCC
Q 024587 31 AICLSVSTLSMFCLAAFHCPGASPLV 56 (265)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~dPG~~p~~ 56 (265)
..++.+..+..|-++.-+|||.+...
T Consensus 200 itl~vf~LvgLyr~C~k~dPg~p~~g 225 (259)
T PF07010_consen 200 ITLSVFTLVGLYRMCWKTDPGTPENG 225 (259)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcccC
Confidence 33444555556666677999976654
No 43
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=34.66 E-value=18 Score=20.31 Aligned_cols=23 Identities=35% Similarity=0.869 Sum_probs=10.5
Q ss_pred ccccccccCC----CCCCCCCCCCCCc
Q 024587 72 YTFCHYCSKP----KSPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~----kP~Rs~HC~~C~~ 94 (265)
.+||..|..+ .-.++..|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4778888653 2335556666654
No 44
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.25 E-value=30 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=18.7
Q ss_pred cccccccccCCCCC----CCCCCCCCCcc
Q 024587 71 NYTFCHYCSKPKSP----RTHHCRSCGMC 95 (265)
Q Consensus 71 ~~~~C~~C~~~kP~----Rs~HC~~C~~C 95 (265)
..+.|+.|...... |.++|+.|+.-
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCE
Confidence 56889999776655 67778888765
No 45
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=34.17 E-value=20 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=18.8
Q ss_pred ccccccccccCCCCCCCCC---CCCCCc
Q 024587 70 ENYTFCHYCSKPKSPRTHH---CRSCGM 94 (265)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs~H---C~~C~~ 94 (265)
+..-+|..|+..-|...++ |..|+.
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 68 EAECWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred CcEEEcccCCCeeecCCccCCcCcCcCC
Confidence 3567899999888776555 888875
No 46
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=34.14 E-value=3.9e+02 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=20.2
Q ss_pred ccccccccCCC------CCCCCCCCCCCcccCCCccc
Q 024587 72 YTFCHYCSKPK------SPRTHHCRSCGMCVLDMDHH 102 (265)
Q Consensus 72 ~~~C~~C~~~k------P~Rs~HC~~C~~CV~r~DHH 102 (265)
..-|++|+... +...-+|..|+.-..|.+++
T Consensus 13 ~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~ 49 (403)
T TIGR00155 13 HILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDW 49 (403)
T ss_pred eeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCC
Confidence 45699998433 22334588888887776654
No 47
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=29.24 E-value=22 Score=21.65 Aligned_cols=16 Identities=38% Similarity=0.897 Sum_probs=8.7
Q ss_pred CCCcccCCCccccccc
Q 024587 91 SCGMCVLDMDHHCPFI 106 (265)
Q Consensus 91 ~C~~CV~r~DHHC~wi 106 (265)
.|..|+...|-||.|-
T Consensus 6 sC~~C~~~~~~~C~Wc 21 (46)
T smart00423 6 SCSECLLARDPYCAWC 21 (46)
T ss_pred cHHHHHcCCCCCCCcc
Confidence 4555555555555553
No 48
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=28.74 E-value=43 Score=17.77 Aligned_cols=19 Identities=42% Similarity=1.246 Sum_probs=9.5
Q ss_pred cccccCCCCCCC----CCCCCCC
Q 024587 75 CHYCSKPKSPRT----HHCRSCG 93 (265)
Q Consensus 75 C~~C~~~kP~Rs----~HC~~C~ 93 (265)
|..|+....+|- ..|..|+
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 455555555553 3455554
No 49
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=28.62 E-value=40 Score=18.62 Aligned_cols=20 Identities=25% Similarity=0.733 Sum_probs=12.6
Q ss_pred ccccccCCCCCC-CCCCCCCC
Q 024587 74 FCHYCSKPKSPR-THHCRSCG 93 (265)
Q Consensus 74 ~C~~C~~~kP~R-s~HC~~C~ 93 (265)
.|..|....... ..+|+.|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~ 22 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECC 22 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCC
Confidence 366666655555 67776665
No 50
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=28.49 E-value=4.1e+02 Score=24.77 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred cccccCC------CCCCCCCCCCCCcccCCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 024587 75 CHYCSKP------KSPRTHHCRSCGMCVLDMDHHCPFIGNCVGAANHRYFILFLISAVVSTIYVAIMSVTAGLHIWSPLS 148 (265)
Q Consensus 75 C~~C~~~------kP~Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~N~r~F~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~ 148 (265)
|++|+.. +|...-+|..|+.-..|.+++ ...-...+-...+..+..-..++-..
T Consensus 13 C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~--------------------~~~~~lAl~italil~i~An~~P~~~ 72 (419)
T PRK15103 13 CPQCDMLVALPRLEHGQKAACPRCGTTLTVRWDE--------------------PRQRPTAYALSALFMLLLANLFPFVN 72 (419)
T ss_pred CCCCCceeecCCCCCCCeeECCCCCCCCcCCCCC--------------------cHHHHHHHHHHHHHHHHHHHhChhhe
Q ss_pred ccCCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024587 149 IRSHAPSNVVGTDLAMRFVKEIIIALLNSALLMSSRGLLLVYLFVSSISVNLGLSVLLW 207 (265)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~ 207 (265)
.+..+..+. ..+++....+.-.+...+.+.++...+.+....++.
T Consensus 73 ~~~~G~~~~--------------~Tl~~~v~~l~~~~~~~la~~v~~~~i~~P~l~l~~ 117 (419)
T PRK15103 73 MNVAGITSE--------------ITLLEIPGVMFSEDYASLATFFLLFVQLVPAFCMVT 117 (419)
T ss_pred eeecCCcee--------------ccHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHH
No 51
>PLN00186 ribosomal protein S26; Provisional
Probab=26.95 E-value=28 Score=25.83 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=14.1
Q ss_pred CCCCCCCCCcccCCCcccc
Q 024587 85 RTHHCRSCGMCVLDMDHHC 103 (265)
Q Consensus 85 Rs~HC~~C~~CV~r~DHHC 103 (265)
+.-||..|++||.+----+
T Consensus 19 ~~V~C~nCgr~vPKDKAIk 37 (109)
T PLN00186 19 KRIRCSNCGKCVPKDKAIK 37 (109)
T ss_pred cceeeCCCcccccccceEE
Confidence 4568999999999844433
No 52
>PRK09335 30S ribosomal protein S26e; Provisional
Probab=26.21 E-value=28 Score=25.19 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=15.9
Q ss_pred CCCCCCCCCcccCCCcccccc
Q 024587 85 RTHHCRSCGMCVLDMDHHCPF 105 (265)
Q Consensus 85 Rs~HC~~C~~CV~r~DHHC~w 105 (265)
+.-+|..|++||++----+.+
T Consensus 19 ~~V~C~nCgr~vPKDKAIkrf 39 (95)
T PRK09335 19 GYVQCDNCGRRVPRDKAVCVT 39 (95)
T ss_pred ccEEeCCCCCcCcCCceEEEE
Confidence 456799999999996655543
No 53
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=26.12 E-value=27 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.919 Sum_probs=17.2
Q ss_pred cccccccccCCCCCCCCCCCCCCc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
..+||++|..++| ++.|++|+.
T Consensus 318 d~~fCstCG~~ga--~KrCs~CKa 339 (396)
T KOG1710|consen 318 DCQFCSTCGHPGA--KKRCSQCKA 339 (396)
T ss_pred ecccccccCCCCc--cchhhhhHH
Confidence 4689999998776 567888774
No 54
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=25.88 E-value=25 Score=30.97 Aligned_cols=26 Identities=46% Similarity=0.842 Sum_probs=16.9
Q ss_pred cccccccC---CCCCCCCCCCCCCcccCC
Q 024587 73 TFCHYCSK---PKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 73 ~~C~~C~~---~kP~Rs~HC~~C~~CV~r 98 (265)
..|..|.. ---.|-|||+.||+-|=.
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~ 197 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCA 197 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhh
Confidence 45666654 334678889888885544
No 55
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=25.75 E-value=36 Score=24.41 Aligned_cols=10 Identities=20% Similarity=0.786 Sum_probs=8.0
Q ss_pred cccccccccc
Q 024587 101 HHCPFIGNCV 110 (265)
Q Consensus 101 HHC~wi~nCI 110 (265)
.||||++.-.
T Consensus 56 ~~CPwv~~~~ 65 (91)
T PF08600_consen 56 EYCPWVNPST 65 (91)
T ss_pred ccCCccCCcc
Confidence 6899998754
No 56
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=25.19 E-value=39 Score=27.95 Aligned_cols=23 Identities=30% Similarity=0.872 Sum_probs=17.9
Q ss_pred ccccCCCCCCCCCCCCCCcccCC
Q 024587 76 HYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 76 ~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
++|+..--+--.-|+.||+||..
T Consensus 101 ~~CeA~~t~~G~~Ck~CgkCvi~ 123 (209)
T COG1852 101 PKCEAKLTPTGYECKKCGKCVIG 123 (209)
T ss_pred CCCccccccccceecccCCeehH
Confidence 45776666778889999999863
No 57
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.99 E-value=37 Score=29.57 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=13.9
Q ss_pred cccccccccCCCCCCC
Q 024587 71 NYTFCHYCSKPKSPRT 86 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs 86 (265)
...||+.||...|.||
T Consensus 254 ~ty~Cp~CQ~~~~~~~ 269 (269)
T PRK14811 254 GTHFCPQCQPLRPLRS 269 (269)
T ss_pred CcEECCCCcCCCCCCC
Confidence 3579999999999986
No 58
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=24.42 E-value=40 Score=26.79 Aligned_cols=9 Identities=33% Similarity=1.217 Sum_probs=5.5
Q ss_pred ccccccCCC
Q 024587 74 FCHYCSKPK 82 (265)
Q Consensus 74 ~C~~C~~~k 82 (265)
.||.|..+.
T Consensus 2 ~cp~c~~~~ 10 (154)
T PRK00464 2 RCPFCGHPD 10 (154)
T ss_pred cCCCCCCCC
Confidence 477777543
No 59
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=24.32 E-value=24 Score=27.96 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=17.2
Q ss_pred cccccccCCCCCCCCCCCCCCcccCCC
Q 024587 73 TFCHYCSKPKSPRTHHCRSCGMCVLDM 99 (265)
Q Consensus 73 ~~C~~C~~~kP~Rs~HC~~C~~CV~r~ 99 (265)
.....|... ..+||-.|..|+.|+
T Consensus 141 ~~s~sC~~~---~~~~CG~C~~C~~r~ 164 (169)
T cd01995 141 ELTWSCYNG---GEKHCGECDSCLLRK 164 (169)
T ss_pred hheeeccCC---CCCCCCCCHHHHHHH
Confidence 345567654 338999999999874
No 60
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=24.09 E-value=21 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=11.9
Q ss_pred ccccccccCCCCCCCCCCCCCC
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCG 93 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~ 93 (265)
.+.|..|....-|....|..|+
T Consensus 11 ~~rC~~Cg~~~~pPr~~Cp~C~ 32 (37)
T PF12172_consen 11 GQRCRDCGRVQFPPRPVCPHCG 32 (37)
T ss_dssp EEE-TTT--EEES--SEETTTT
T ss_pred EEEcCCCCCEecCCCcCCCCcC
Confidence 4789999887443347787775
No 61
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=24.06 E-value=52 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=18.2
Q ss_pred cccccccccCCCCCCCCCCCC
Q 024587 71 NYTFCHYCSKPKSPRTHHCRS 91 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~ 91 (265)
+.+.|++|..+---|+--|+.
T Consensus 10 GirkCp~CGt~NG~R~~~CKN 30 (44)
T PF14952_consen 10 GIRKCPKCGTYNGTRGLSCKN 30 (44)
T ss_pred ccccCCcCcCccCcccccccC
Confidence 578999999999999988863
No 62
>PTZ00172 40S ribosomal protein S26; Provisional
Probab=23.99 E-value=32 Score=25.52 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=14.1
Q ss_pred CCCCCCCCCcccCCCcccc
Q 024587 85 RTHHCRSCGMCVLDMDHHC 103 (265)
Q Consensus 85 Rs~HC~~C~~CV~r~DHHC 103 (265)
+.-+|..|++||.+----+
T Consensus 19 ~~V~C~nCgr~vPKDKAIk 37 (108)
T PTZ00172 19 KPVRCSNCGRCVPKDKAIK 37 (108)
T ss_pred ccEEeCCccccccccceEE
Confidence 3557999999999854433
No 63
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=53 Score=21.65 Aligned_cols=37 Identities=24% Similarity=0.592 Sum_probs=25.1
Q ss_pred ccccccccCCCCCCCC----CCCCCCcccCCCccccccccc
Q 024587 72 YTFCHYCSKPKSPRTH----HCRSCGMCVLDMDHHCPFIGN 108 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~----HC~~C~~CV~r~DHHC~wi~n 108 (265)
...|..|+...+++.+ -|..|+.=+..+++-|.=.+|
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~ 49 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGN 49 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCC
Confidence 4678888887776654 388888666666776665443
No 64
>PHA02942 putative transposase; Provisional
Probab=23.40 E-value=50 Score=30.37 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=17.8
Q ss_pred cccccccccCCCCC---CCCCCCCCCc
Q 024587 71 NYTFCHYCSKPKSP---RTHHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~kP~---Rs~HC~~C~~ 94 (265)
..+.|+.|....++ |.+.|..||.
T Consensus 324 TSq~Cs~CG~~~~~l~~r~f~C~~CG~ 350 (383)
T PHA02942 324 SSVSCPKCGHKMVEIAHRYFHCPSCGY 350 (383)
T ss_pred CCccCCCCCCccCcCCCCEEECCCCCC
Confidence 45789999876554 6778888776
No 65
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=21 Score=32.61 Aligned_cols=29 Identities=28% Similarity=0.636 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCcccCCCcccccccccccccccH
Q 024587 81 PKSPRTHHCRSCGMCVLDMDHHCPFIGNCVGAANH 115 (265)
Q Consensus 81 ~kP~Rs~HC~~C~~CV~r~DHHC~wi~nCIG~~N~ 115 (265)
++-.|..||..|+. .|| +|+.||||.-=+
T Consensus 9 ~sl~~p~l~~tC~e----~~h--~w~~~c~ga~~~ 37 (460)
T KOG1398|consen 9 RSLARPSLAETCDE----ADH--SWVANCIGALCQ 37 (460)
T ss_pred hhhcCchHhhhhhh----ccC--CcccchhHHHHH
Confidence 34556677777765 677 599999996433
No 66
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=23.23 E-value=13 Score=23.35 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=11.4
Q ss_pred CCCCcccCCCccccccc
Q 024587 90 RSCGMCVLDMDHHCPFI 106 (265)
Q Consensus 90 ~~C~~CV~r~DHHC~wi 106 (265)
..|+.|+.-.|-+|.|-
T Consensus 6 ~sC~~Cl~~~dp~CgWc 22 (51)
T PF01437_consen 6 TSCSSCLSSRDPYCGWC 22 (51)
T ss_dssp SSHHHHHHSTCTTEEEE
T ss_pred CcHHHHHcCCCcCcccc
Confidence 55667777777677773
No 67
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=22.55 E-value=49 Score=28.98 Aligned_cols=24 Identities=33% Similarity=0.866 Sum_probs=16.7
Q ss_pred cccccccccCCCCCC----CCCCCCCCc
Q 024587 71 NYTFCHYCSKPKSPR----THHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~kP~R----s~HC~~C~~ 94 (265)
..|||.+|..+.-+| +..|+.|+.
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~ 137 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGH 137 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCC
Confidence 467888887766554 567777775
No 68
>PF00539 Tat: Transactivating regulatory protein (Tat); InterPro: IPR001831 Like other lentiviruses, Human immunodeficiency virus 1 (HIV-1) encodes a trans-activating regulatory protein (Tat), which is essential for efficient transcription of the viral genome [, ]. Tat acts by binding to an RNA stem-loop structure, the trans-activating response element (TAR), found at the 5' ends of nascent HIV-1 transcripts. In binding to TAR, Tat alters the properties of the transcription complex, recruits a positive transcription elongation complex (P-TEFb) and hence increases the production of full-length viral RNA []. Tat protein also associates with RNA polymerase II complexes during early transcription elongation after the promoter clearance and before the synthesis of full-length TAR RNA transcript. This interaction of Tat with RNA polymerase II elongation complexes is P-TEFb-independent. There are two Tat binding sites on each transcription elongation complex; one is located on TAR RNA and the other one on RNA polymerase II near the exit site for nascent mRNA transcripts which suggests that two Tat molecules are involved in performing various functions during a single round of HIV-1 mRNA synthesis []. The minimum Tat sequence that can mediate specific TAR binding in vitro has been mapped to a basic domain of 10 amino acids, comprising mostly Arg and Lys residues. Regulatory activity, however, also requires the 47 N-terminal residues, which interact with components of the transcription complex and function as a transcriptional activation domain [, , ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 2W2H_D 1ZBN_B 1TVS_A 1TVT_A 3O6L_C 3O6M_C 3MI9_C 3MIA_C 1JFW_A 1TBC_A ....
Probab=22.47 E-value=2e+02 Score=19.52 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 024587 86 THHCRSC 92 (265)
Q Consensus 86 s~HC~~C 92 (265)
+.||-+|
T Consensus 36 cyHCqlC 42 (68)
T PF00539_consen 36 CYHCQLC 42 (68)
T ss_dssp TSSSSCC
T ss_pred eeeceee
Confidence 5666654
No 69
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=22.30 E-value=65 Score=20.97 Aligned_cols=23 Identities=39% Similarity=0.930 Sum_probs=14.9
Q ss_pred ccccccccccCCCCCCCCC-CCCCCc
Q 024587 70 ENYTFCHYCSKPKSPRTHH-CRSCGM 94 (265)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs~H-C~~C~~ 94 (265)
.....|+.|...+. +|| |..||.
T Consensus 25 ~~l~~C~~CG~~~~--~H~vC~~CG~ 48 (57)
T PRK12286 25 PGLVECPNCGEPKL--PHRVCPSCGY 48 (57)
T ss_pred CcceECCCCCCccC--CeEECCCCCc
Confidence 34567999986664 454 667664
No 70
>PF04161 Arv1: Arv1-like family ; InterPro: IPR007290 Arv1 is a transmembrane protein, with potential zinc-binding motifs, that mediates sterol homeostasis. Its action is important in lipid homeostasis, which prevents free sterol toxicity []. Arv1 contains a homology domain (AHD), which consists of an N-terminal cysteine-rich subdomain with a putative zinc-binding motif, followed by a C-terminal subdomain of 33 amino acids. The C-terminal subdomain of the AHD is critical for the protein's function []. In yeast, Arv1p is important for the delivery of an early glycosylphosphatidylinositol GPI intermediate, GlcN-acylPI, to the first mannosyltransferase of GPI synthesis in the ER lumen []. It is important for the traffic of sterol in yeast and in humans. In eukaryotic cells, it may fuction in the sphingolipid metabolic pathway as a transporter of ceramides between the ER and Golgi [].
Probab=21.36 E-value=35 Score=28.49 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=7.3
Q ss_pred CCCCCCCCCcccCC
Q 024587 85 RTHHCRSCGMCVLD 98 (265)
Q Consensus 85 Rs~HC~~C~~CV~r 98 (265)
|=-+|+.||+.+.|
T Consensus 23 rLt~C~~C~~vaDk 36 (208)
T PF04161_consen 23 RLTKCPNCGKVADK 36 (208)
T ss_pred EEeeccccCCcccc
Confidence 33456666655544
No 71
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=21.08 E-value=35 Score=34.26 Aligned_cols=37 Identities=32% Similarity=0.664 Sum_probs=27.8
Q ss_pred CCCCC---CCCcccCCCcccccccc---ccc--ccccHHHHHHHH
Q 024587 86 THHCR---SCGMCVLDMDHHCPFIG---NCV--GAANHRYFILFL 122 (265)
Q Consensus 86 s~HC~---~C~~CV~r~DHHC~wi~---nCI--G~~N~r~F~~fl 122 (265)
-|+|+ .|..|++.+|-||-|-+ .|+ +..|.|.+.+=+
T Consensus 491 l~~C~~y~~C~dcclarDPYCAWd~~~~~C~~~~~~~~rs~~Qd~ 535 (737)
T KOG3611|consen 491 LARCSRYGSCADCCLARDPYCAWDGVNSKCSLLSPTNRRSVIQDV 535 (737)
T ss_pred hhHhhcccchhhhhhccCCCccccCCCCcceECCCCcccchhhhh
Confidence 46777 89898888999999987 786 444666666644
No 72
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=20.78 E-value=52 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.3
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.+.|+.|.++.- ...|..||.
T Consensus 5 mr~C~~CgvYTL--k~~CP~CG~ 25 (56)
T PRK13130 5 IRKCPKCGVYTL--KEICPVCGG 25 (56)
T ss_pred ceECCCCCCEEc--cccCcCCCC
Confidence 467888887776 677777775
No 73
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.69 E-value=65 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.661 Sum_probs=14.2
Q ss_pred cccccccCC-----CCCCCCCCCCCCc
Q 024587 73 TFCHYCSKP-----KSPRTHHCRSCGM 94 (265)
Q Consensus 73 ~~C~~C~~~-----kP~Rs~HC~~C~~ 94 (265)
-.|++|... +....+.|+.|++
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 569999853 3345566777764
No 74
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=20.54 E-value=55 Score=28.27 Aligned_cols=24 Identities=29% Similarity=0.802 Sum_probs=14.9
Q ss_pred cccccccccCCC----CCCCCCCCCCCc
Q 024587 71 NYTFCHYCSKPK----SPRTHHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~k----P~Rs~HC~~C~~ 94 (265)
..+||+.|.... -.+..+|..|++
T Consensus 98 ~~~fC~~CG~~~~~~~~~~~~~C~~c~~ 125 (256)
T PRK00241 98 SHRFCGYCGHPMHPSKTEWAMLCPHCRE 125 (256)
T ss_pred cCccccccCCCCeecCCceeEECCCCCC
Confidence 468999998753 233445666654
No 75
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=20.44 E-value=17 Score=31.30 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=8.6
Q ss_pred ccccccccCCCCCC
Q 024587 72 YTFCHYCSKPKSPR 85 (265)
Q Consensus 72 ~~~C~~C~~~kP~R 85 (265)
.+.|..|....-.|
T Consensus 261 ~~~C~iC~~~~~~R 274 (325)
T KOG4399|consen 261 KHGCFICGELDHKR 274 (325)
T ss_pred hcceeecccccccc
Confidence 45666666666666
No 76
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=20.42 E-value=33 Score=32.50 Aligned_cols=23 Identities=43% Similarity=0.901 Sum_probs=16.0
Q ss_pred ccccccccCCC--CCCCCCCCCCCc
Q 024587 72 YTFCHYCSKPK--SPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~k--P~Rs~HC~~C~~ 94 (265)
...|-.|+.+- --|-|||+.|+.
T Consensus 901 a~~cmacq~pf~afrrrhhcrncgg 925 (990)
T KOG1819|consen 901 AEQCMACQMPFNAFRRRHHCRNCGG 925 (990)
T ss_pred chhhhhccCcHHHHHHhhhhcccCc
Confidence 35677777543 247899998887
No 77
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.17 E-value=41 Score=32.91 Aligned_cols=23 Identities=39% Similarity=0.875 Sum_probs=17.3
Q ss_pred ccccccccCC--CCCCCCCCCCCCc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~ 94 (265)
...|.+|... --.|+|||+.||+
T Consensus 165 ~~~C~rCr~~F~~~~rkHHCr~CG~ 189 (634)
T KOG1818|consen 165 SEECLRCRVKFGLTNRKHHCRNCGQ 189 (634)
T ss_pred ccccceeeeeeeeccccccccccch
Confidence 4678888652 2349999999998
Done!