Query 024587
Match_columns 265
No_of_seqs 172 out of 1568
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 88.4 0.45 1.5E-05 29.9 3.2 29 70-98 17-45 (56)
2 1wfl_A Zinc finger protein 216 87.3 0.92 3.1E-05 30.3 4.4 37 71-108 24-65 (74)
3 3j21_g 50S ribosomal protein L 86.1 0.3 1E-05 30.3 1.5 28 71-98 13-40 (51)
4 1x4u_A Zinc finger, FYVE domai 69.8 2.6 9E-05 28.7 2.3 24 72-95 14-39 (84)
5 1wfk_A Zinc finger, FYVE domai 68.8 2.5 8.5E-05 29.2 2.1 24 72-95 9-34 (88)
6 1vfy_A Phosphatidylinositol-3- 66.4 2.9 9.9E-05 27.7 1.9 24 73-96 12-37 (73)
7 1joc_A EEA1, early endosomal a 64.7 2.8 9.6E-05 31.0 1.8 25 72-96 69-95 (125)
8 1dvp_A HRS, hepatocyte growth 60.6 3.3 0.00011 33.7 1.6 25 72-96 161-187 (220)
9 1z2q_A LM5-1; membrane protein 60.1 4.7 0.00016 27.4 2.1 25 72-96 21-47 (84)
10 2yw8_A RUN and FYVE domain-con 56.9 4.8 0.00016 27.3 1.7 25 72-96 19-45 (82)
11 2cr8_A MDM4 protein; ZF-ranbp 55.8 4.5 0.00015 24.8 1.2 23 72-94 11-33 (53)
12 3u5e_m 60S ribosomal protein L 51.9 5.8 0.0002 29.1 1.6 25 71-95 92-118 (128)
13 3t7l_A Zinc finger FYVE domain 51.7 6.9 0.00024 27.0 1.8 25 72-96 20-46 (90)
14 2c6a_A Ubiquitin-protein ligas 51.2 11 0.00039 22.5 2.4 24 71-94 12-35 (46)
15 1twf_L ABC10-alpha, DNA-direct 46.6 11 0.00038 24.8 2.1 27 71-97 27-56 (70)
16 3j20_Y 30S ribosomal protein S 43.4 5.4 0.00019 24.4 0.2 24 70-93 17-44 (50)
17 1wg2_A Zinc finger (AN1-like) 40.6 30 0.001 22.3 3.4 39 72-111 15-58 (64)
18 1wil_A KIAA1045 protein; ring 40.4 30 0.001 23.6 3.5 26 71-96 14-39 (89)
19 2k4x_A 30S ribosomal protein S 39.0 23 0.00077 22.0 2.6 24 71-94 17-44 (55)
20 1y02_A CARP2, FYVE-ring finger 37.6 7.4 0.00025 28.5 0.2 23 73-95 20-44 (120)
21 2dkt_A Ring finger and CHY zin 37.2 5.6 0.00019 30.1 -0.6 40 71-110 82-125 (143)
22 1wff_A Riken cDNA 2810002D23 p 36.9 72 0.0024 21.7 5.0 37 71-108 24-66 (85)
23 3zyq_A Hepatocyte growth facto 36.9 8.7 0.0003 31.3 0.5 25 72-96 164-190 (226)
24 3jyw_9 60S ribosomal protein L 32.6 27 0.00091 23.1 2.2 28 71-98 25-56 (72)
25 2jrp_A Putative cytoplasmic pr 32.4 8.1 0.00028 26.2 -0.3 22 73-95 19-40 (81)
26 2vrw_B P95VAV, VAV1, proto-onc 27.7 19 0.00066 31.6 1.2 28 71-98 356-386 (406)
27 1ffk_W Ribosomal protein L37AE 26.6 13 0.00046 24.6 -0.0 28 71-98 26-57 (73)
28 3gj3_B Nuclear pore complex pr 25.7 31 0.001 19.0 1.4 19 75-93 10-28 (33)
29 2k1p_A Zinc finger RAN-binding 24.6 84 0.0029 17.0 3.1 20 74-93 8-27 (33)
30 2apo_B Ribosome biogenesis pro 23.5 29 0.001 22.0 1.1 21 72-94 6-26 (60)
31 1wfh_A Zinc finger (AN1-like) 22.9 66 0.0022 20.6 2.7 40 71-111 14-58 (64)
32 3qt1_I DNA-directed RNA polyme 20.9 54 0.0018 24.3 2.3 25 70-94 22-54 (133)
33 1h7d_A Aminolevulinic acid syn 20.4 38 0.0013 20.5 1.1 14 97-110 5-18 (49)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=88.37 E-value=0.45 Score=29.95 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.6
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCC
Q 024587 70 ENYTFCHYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
.+...|..|..+-|+|+.-|+.|+.--+|
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 35689999999999999999999865444
No 2
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=87.31 E-value=0.92 Score=30.31 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=23.5
Q ss_pred cccccccccCCCCCCCCCCCCCCcc-----cCCCccccccccc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGMC-----VLDMDHHCPFIGN 108 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~C-----V~r~DHHC~wi~n 108 (265)
....|..|+.....-...|+ |+.- -.--||.|++--.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGG
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhh
Confidence 45689999876444457777 7652 2223888887543
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.12 E-value=0.3 Score=30.30 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=24.4
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCC
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGMCVLD 98 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r 98 (265)
..+.|+.|....|+++..|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4688999999999999999999976554
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.81 E-value=2.6 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=17.5
Q ss_pred ccccccccCC--CCCCCCCCCCCCcc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMC 95 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (265)
...|..|+.. .-.|-|||+.|++-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 3567777653 44688999999874
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=68.82 E-value=2.5 Score=29.22 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=17.5
Q ss_pred ccccccccCC--CCCCCCCCCCCCcc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMC 95 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (265)
...|..|+.. .-.|-|||+.|++-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 4568888763 34688999999873
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=66.45 E-value=2.9 Score=27.69 Aligned_cols=24 Identities=50% Similarity=0.948 Sum_probs=17.1
Q ss_pred cccccccCC--CCCCCCCCCCCCccc
Q 024587 73 TFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 73 ~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
..|..|+.. .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 368888753 345889999998743
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.72 E-value=2.8 Score=30.98 Aligned_cols=25 Identities=40% Similarity=0.841 Sum_probs=18.0
Q ss_pred ccccccccCC--CCCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
...|..|+.. .-.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3578888764 346889999998743
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.61 E-value=3.3 Score=33.66 Aligned_cols=25 Identities=40% Similarity=0.921 Sum_probs=16.9
Q ss_pred ccccccccCC--CCCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
.+.|..|+.. .-.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3678888653 235788888888743
No 9
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.11 E-value=4.7 Score=27.42 Aligned_cols=25 Identities=36% Similarity=0.862 Sum_probs=17.7
Q ss_pred ccccccccCC--CCCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
...|..|+.. .-.|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 4578888663 336889999998743
No 10
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=56.93 E-value=4.8 Score=27.25 Aligned_cols=25 Identities=48% Similarity=0.984 Sum_probs=17.3
Q ss_pred ccccccccCC--CCCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
...|..|+.. .-.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3567777653 346889999998743
No 11
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=55.82 E-value=4.5 Score=24.78 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=18.6
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.=.|.+|+..-||--.||..|-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCC
T ss_pred eeecccccccCCCccchhHHHHH
Confidence 34699999999998999887755
No 12
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=51.95 E-value=5.8 Score=29.14 Aligned_cols=25 Identities=32% Similarity=0.862 Sum_probs=21.6
Q ss_pred cccccccccCCCCCCCCCCCC--CCcc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRS--CGMC 95 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 95 (265)
....|.+|..+-|+|+..|+. |++.
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 358899999999999999994 8764
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.66 E-value=6.9 Score=26.99 Aligned_cols=25 Identities=36% Similarity=0.816 Sum_probs=17.2
Q ss_pred ccccccccCC--CCCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
...|..|+.. .-.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3568888752 235789999998743
No 14
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=51.19 E-value=11 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=19.6
Q ss_pred cccccccccCCCCCCCCCCCCCCc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
+.=.|.+|+..-||--.||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 345699999999999999988754
No 15
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=46.62 E-value=11 Score=24.76 Aligned_cols=27 Identities=26% Similarity=0.624 Sum_probs=19.9
Q ss_pred cccccccccCC---CCCCCCCCCCCCcccC
Q 024587 71 NYTFCHYCSKP---KSPRTHHCRSCGMCVL 97 (265)
Q Consensus 71 ~~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 97 (265)
....|..|... ++..+-+|+.|+..|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 34579999775 4455778999998665
No 16
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.40 E-value=5.4 Score=24.39 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=14.7
Q ss_pred ccccccccccCCCCCC----CCCCCCCC
Q 024587 70 ENYTFCHYCSKPKSPR----THHCRSCG 93 (265)
Q Consensus 70 ~~~~~C~~C~~~kP~R----s~HC~~C~ 93 (265)
...++|+.|....-.. .++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 3468999998632222 34666665
No 17
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.62 E-value=30 Score=22.27 Aligned_cols=39 Identities=28% Similarity=0.530 Sum_probs=23.8
Q ss_pred ccccccccCCCCCCCCCCCCCCc-----ccCCCcccccccccccc
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCGM-----CVLDMDHHCPFIGNCVG 111 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~-----CV~r~DHHC~wi~nCIG 111 (265)
...|..|+.....-.-.| .|+. --.--||.|++--.=.|
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred CCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 467888987654445667 4654 22333899987544443
No 18
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=40.40 E-value=30 Score=23.56 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=21.8
Q ss_pred cccccccccCCCCCCCCCCCCCCccc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGMCV 96 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~CV 96 (265)
....|..|+.+.-.--.-|++|+|+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 56789999998877778899999954
No 19
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=38.99 E-value=23 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.586 Sum_probs=14.1
Q ss_pred cccccccccCCCCC----CCCCCCCCCc
Q 024587 71 NYTFCHYCSKPKSP----RTHHCRSCGM 94 (265)
Q Consensus 71 ~~~~C~~C~~~kP~----Rs~HC~~C~~ 94 (265)
..++|++|....-. -.++|..|+.
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCC
Confidence 46899999863321 2335655543
No 20
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=37.60 E-value=7.4 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.626 Sum_probs=17.0
Q ss_pred cccccccCC--CCCCCCCCCCCCcc
Q 024587 73 TFCHYCSKP--KSPRTHHCRSCGMC 95 (265)
Q Consensus 73 ~~C~~C~~~--kP~Rs~HC~~C~~C 95 (265)
..|..|+.. ...|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 567777652 34688999999983
No 21
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.16 E-value=5.6 Score=30.12 Aligned_cols=40 Identities=30% Similarity=0.719 Sum_probs=23.1
Q ss_pred cccccccccCCCCC-CCCCCCCCCcccCC---Cccccccccccc
Q 024587 71 NYTFCHYCSKPKSP-RTHHCRSCGMCVLD---MDHHCPFIGNCV 110 (265)
Q Consensus 71 ~~~~C~~C~~~kP~-Rs~HC~~C~~CV~r---~DHHC~wi~nCI 110 (265)
+..||.+|+.+.++ ...||..||-|-.+ -=-||.=-|.|+
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 45688888876443 34666666666654 123455445553
No 22
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.90 E-value=72 Score=21.69 Aligned_cols=37 Identities=27% Similarity=0.676 Sum_probs=24.5
Q ss_pred cccccccccCCCCC-CCCCCCCCCc--c---cCCCccccccccc
Q 024587 71 NYTFCHYCSKPKSP-RTHHCRSCGM--C---VLDMDHHCPFIGN 108 (265)
Q Consensus 71 ~~~~C~~C~~~kP~-Rs~HC~~C~~--C---V~r~DHHC~wi~n 108 (265)
....|..|+..... -..+|+ |+. | -.--||.|++--.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCS
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhh
Confidence 45789999877666 367776 664 3 3335999987443
No 23
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.89 E-value=8.7 Score=31.28 Aligned_cols=25 Identities=40% Similarity=0.881 Sum_probs=17.9
Q ss_pred ccccccccCC--CCCCCCCCCCCCccc
Q 024587 72 YTFCHYCSKP--KSPRTHHCRSCGMCV 96 (265)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (265)
...|..|+.. .-.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 3578888742 234789999999844
No 24
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=32.59 E-value=27 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=21.7
Q ss_pred cccccccccCCCCCCC----CCCCCCCcccCC
Q 024587 71 NYTFCHYCSKPKSPRT----HHCRSCGMCVLD 98 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 98 (265)
....|+.|...+-.|. +||+.|++=+..
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 4567999988877774 699999987664
No 25
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.39 E-value=8.1 Score=26.21 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=13.3
Q ss_pred cccccccCCCCCCCCCCCCCCcc
Q 024587 73 TFCHYCSKPKSPRTHHCRSCGMC 95 (265)
Q Consensus 73 ~~C~~C~~~kP~Rs~HC~~C~~C 95 (265)
..|.+|+..-++.+ .|..|++=
T Consensus 19 ~~C~~C~~~~~~~a-fCPeCgq~ 40 (81)
T 2jrp_A 19 AHCETCAKDFSLQA-LCPDCRQP 40 (81)
T ss_dssp EECTTTCCEEEEEE-ECSSSCSC
T ss_pred eECccccccCCCcc-cCcchhhH
Confidence 34666666666666 66666653
No 26
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.69 E-value=19 Score=31.64 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.5
Q ss_pred cccccccccCCC---CCCCCCCCCCCcccCC
Q 024587 71 NYTFCHYCSKPK---SPRTHHCRSCGMCVLD 98 (265)
Q Consensus 71 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~r 98 (265)
...+|..|+..- -.|-|||+.|+..|-+
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 458899998643 4588999988865544
No 27
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=26.60 E-value=13 Score=24.59 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred cccccccccCCCCCCC----CCCCCCCcccCC
Q 024587 71 NYTFCHYCSKPKSPRT----HHCRSCGMCVLD 98 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs----~HC~~C~~CV~r 98 (265)
....|+.|...+-.|. ++|+.|++-+..
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 4578999988777775 889999987654
No 28
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=25.75 E-value=31 Score=19.01 Aligned_cols=19 Identities=26% Similarity=0.823 Sum_probs=11.0
Q ss_pred cccccCCCCCCCCCCCCCC
Q 024587 75 CHYCSKPKSPRTHHCRSCG 93 (265)
Q Consensus 75 C~~C~~~kP~Rs~HC~~C~ 93 (265)
|+.|-..-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 5555555555555555554
No 29
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=24.57 E-value=84 Score=16.99 Aligned_cols=20 Identities=30% Similarity=0.752 Sum_probs=9.8
Q ss_pred ccccccCCCCCCCCCCCCCC
Q 024587 74 FCHYCSKPKSPRTHHCRSCG 93 (265)
Q Consensus 74 ~C~~C~~~kP~Rs~HC~~C~ 93 (265)
.|+.|...-=+|-..|..|+
T Consensus 8 ~C~~C~~~Nfa~R~~C~~C~ 27 (33)
T 2k1p_A 8 QCKTCSNVNWARRSECNMCN 27 (33)
T ss_dssp BCSSSCCBCCTTCSBCSSSC
T ss_pred ccCCCCCccccccccccccC
Confidence 35555555444444444444
No 30
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.53 E-value=29 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=15.2
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 024587 72 YTFCHYCSKPKSPRTHHCRSCGM 94 (265)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~ 94 (265)
.+.|+.|..+.- .+.|..||.
T Consensus 6 mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 6 MKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CEECTTTCCEES--SSBCSSSCS
T ss_pred ceeCCCCCCEec--cccCcCCCC
Confidence 467888877776 666777775
No 31
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.90 E-value=66 Score=20.63 Aligned_cols=40 Identities=30% Similarity=0.595 Sum_probs=24.7
Q ss_pred cccccccccCCCCCCCCCCCCCCc--c---cCCCcccccccccccc
Q 024587 71 NYTFCHYCSKPKSPRTHHCRSCGM--C---VLDMDHHCPFIGNCVG 111 (265)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~--C---V~r~DHHC~wi~nCIG 111 (265)
....|..|+.....-...|+ |+. | -.--||.|++--.=.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHH
Confidence 34779999876555467774 665 2 2233888987544333
No 32
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=20.93 E-value=54 Score=24.26 Aligned_cols=25 Identities=32% Similarity=0.936 Sum_probs=17.8
Q ss_pred ccccccccccCCCCCCC--------CCCCCCCc
Q 024587 70 ENYTFCHYCSKPKSPRT--------HHCRSCGM 94 (265)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs--------~HC~~C~~ 94 (265)
...+||++|+..-.++. ..|+.|+.
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 45799999987754442 56777776
No 33
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=20.37 E-value=38 Score=20.49 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=10.7
Q ss_pred CCCccccccccccc
Q 024587 97 LDMDHHCPFIGNCV 110 (265)
Q Consensus 97 ~r~DHHC~wi~nCI 110 (265)
..++|+||+++.+=
T Consensus 5 a~~l~~CPFL~R~p 18 (49)
T 1h7d_A 5 AMLLRSCPVLSQGP 18 (49)
T ss_dssp SCSCCSCCCCSSCS
T ss_pred hhhhccCCchhcCC
Confidence 35788999998763
Done!