BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024588
(265 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/267 (80%), Positives = 239/267 (89%), Gaps = 3/267 (1%)
Query: 1 MAVAVGRGFLLQPSSSSSFIC--NDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT 58
MAVA+GR F++QP SSS ++NKSS G FLPAK +TR VV AQQRPT
Sbjct: 1 MAVAMGRPFVIQPCLSSSLCSLSKNINKSSFGAAETFLPAKPSSTR-CTPVVVHAQQRPT 59
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG+DPPPYLDGTLAGDFGFDPLGLGEDP+SL+WYVQAELVHARFAMAGVAGILFTDLL
Sbjct: 60 WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLL 119
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
RVTGIR+LPVWYEAGAV+F+FASTRTL +VQLLLMGFAETKRYMD++SPGSQ KEGSFFG
Sbjct: 120 RVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFG 179
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
LE+ALEGLEPGYPGGPLLNPLGLA+DI NA WKLKEIKNGRLAMVAM+GIFVQA+VTH
Sbjct: 180 LESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHA 239
Query: 239 GPIDNILEHLSDPWHKTIIQTLANSGS 265
GPIDN++EHLS+PWH+TIIQTLANSGS
Sbjct: 240 GPIDNLIEHLSNPWHRTIIQTLANSGS 266
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/263 (77%), Positives = 233/263 (88%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWL 60
MA+ VG GFL+QPSSS S + + ++ + FLPA+ G +R TVV+AQQRPTWL
Sbjct: 1 MAITVGTGFLVQPSSSLSLLGRKSCRPTLDVAYRFLPARPGPSRFSHGTVVQAQQRPTWL 60
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG+DPPPYL+GTLAGDFGFDPLGLGEDPE+LRWYVQAELVHARFAMAGVAGIL TDLLRV
Sbjct: 61 PGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRV 120
Query: 121 TGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
TGI LPVWYEAGAV+F+FAST LFIVQL+LMGF ETKRYMD+ +PGSQ KEGSFFGLE
Sbjct: 121 TGISNLPVWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFTNPGSQAKEGSFFGLE 180
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
AALEGLEPGYPGGPLLNPLGLA+DI+NA +WKLKEIKNGRLAMVAMLG+FVQASVTH GP
Sbjct: 181 AALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVFVQASVTHAGP 240
Query: 241 IDNILEHLSDPWHKTIIQTLANS 263
I+N++EHLS+PWHKTIIQT++++
Sbjct: 241 IENLVEHLSNPWHKTIIQTISST 263
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/269 (77%), Positives = 236/269 (87%), Gaps = 4/269 (1%)
Query: 1 MAVAVGRGFLLQPSSSSS--FICNDVNKSSIGITSAF--LPAKSGTTRRYLATVVRAQQR 56
MAVA+ R + QP SSSS F ++NKSS + F + S ++R Y VVRAQQR
Sbjct: 1 MAVAMVRALVFQPWSSSSLCFTSKNINKSSSVVVDTFWSSKSVSTSSRCYTRAVVRAQQR 60
Query: 57 PTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD 116
PTWLPG+D PPYLDGTLAGD+GFDPLGLGEDPESL+WYVQAELVHARFAM G+AGILFTD
Sbjct: 61 PTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTD 120
Query: 117 LLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
LLRVTGIR+LPVWYEAGAV+++FASTRTL +VQLL MG+AET+RYMDY+SPGSQ KEGSF
Sbjct: 121 LLRVTGIRKLPVWYEAGAVKYEFASTRTLLVVQLLWMGYAETRRYMDYVSPGSQNKEGSF 180
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
FG+EAALEGLEPGYPGGPLLNP GLAKDIR+AR+WKLKEIKNGRLAMVAMLGIFVQA+VT
Sbjct: 181 FGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFVQAAVT 240
Query: 237 HVGPIDNILEHLSDPWHKTIIQTLANSGS 265
H GPIDN+LEHLSDPWHKTIIQTL++S S
Sbjct: 241 HTGPIDNLLEHLSDPWHKTIIQTLSHSTS 269
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/265 (75%), Positives = 226/265 (85%), Gaps = 2/265 (0%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWL 60
MAVA+GR F +QP S F +++ S ++L + T RY T V AQQRPTWL
Sbjct: 1 MAVAIGRSFSIQPGSL--FNNKSLDRGSPAGRLSWLGDGAAATPRYRQTCVGAQQRPTWL 58
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG+DPPP+LDGTLAGDFGFDPLGL EDP SLRWYVQAELVH RFAM GV GIL TDLLRV
Sbjct: 59 PGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRV 118
Query: 121 TGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
TGI ++PVW+EAGAV++ FA+T+TLF+VQL+LMGF ETKRYMD++SPGSQ KEGSFFGLE
Sbjct: 119 TGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAKEGSFFGLE 178
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
A+L+GLEPGYPGGPLLNPLGLAKDI NA +WKLKEIKNGRLAMVAMLGIFVQASVTHVGP
Sbjct: 179 ASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 238
Query: 241 IDNILEHLSDPWHKTIIQTLANSGS 265
IDN++EHLS+PWHKTIIQTLANS S
Sbjct: 239 IDNLVEHLSNPWHKTIIQTLANSSS 263
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/258 (76%), Positives = 221/258 (85%), Gaps = 11/258 (4%)
Query: 16 SSSFICNDVNK----SSIGITSAFLPAKS----GTTRRYLATVVRAQQRPTWLPGVDPPP 67
SSS N++N S +TS LPAKS + R L TVVRAQQRPTWLPG+DPPP
Sbjct: 18 SSSIFTNNINTYQTLSLNKVTS--LPAKSRGIFHSHGRRLCTVVRAQQRPTWLPGLDPPP 75
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
YLDGTLAGDFGFDPLGLGEDPESL+WYVQAELVH+RFAMAGVAGILFTDLLR TG+ LP
Sbjct: 76 YLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLSNLP 135
Query: 128 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
VWYEAGA +F+FA+T TLFIVQ+LLMGF ETKRYMD+ +PGSQ E SFFGLEAALEGLE
Sbjct: 136 VWYEAGATKFQFANTTTLFIVQMLLMGFVETKRYMDFKNPGSQ-GEASFFGLEAALEGLE 194
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 247
PGYPGGP+LNPLG+AKDI+NA EWKLKEIKNGRLAMVA+LGIFVQASVTHVGP++N++EH
Sbjct: 195 PGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFVQASVTHVGPLENLVEH 254
Query: 248 LSDPWHKTIIQTLANSGS 265
LSDPWH TIIQ L+ S S
Sbjct: 255 LSDPWHTTIIQILSASNS 272
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/268 (74%), Positives = 224/268 (83%), Gaps = 5/268 (1%)
Query: 1 MAVAVGRGFLLQPSSSSSFICNDV-NKSSIGITSAFLPA--KSGTTRRYLATVVRAQQRP 57
MA A+ R + QP S F N + N S G S PA ++GTT R Q RP
Sbjct: 1 MAAAIARSYSFQPRSL--FNSNTIYNPSPYGGYSWLGPAASRAGTTPRCRQICAAMQPRP 58
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
TWLPG+DPP YLDGTLAGD+GFDPLGLGEDPESLRWYVQAELVHARFAM GV GIL TDL
Sbjct: 59 TWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDL 118
Query: 118 LRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
LRVTG+ ++PVW+EAGAV+++F +T+TL IVQLLLMGFAETKRYMD+I PGSQ KEGSFF
Sbjct: 119 LRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAKEGSFF 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
GLEA+ EGLEPGYPGGPLLNPLGLAKDI+NARE KLKEIKNGRLAMVA+LGIFVQASVTH
Sbjct: 179 GLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTH 238
Query: 238 VGPIDNILEHLSDPWHKTIIQTLANSGS 265
VGPIDN++EHLS+PWHKT+IQTLA+SGS
Sbjct: 239 VGPIDNLVEHLSNPWHKTVIQTLASSGS 266
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/264 (71%), Positives = 216/264 (81%), Gaps = 4/264 (1%)
Query: 4 AVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGT--TRRYLATVVRAQQRPTWLP 61
A+ R F Q S N + K S PA +GT T R AQQRPTWLP
Sbjct: 6 AIARSFHFQ--QHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRCKQICAAAQQRPTWLP 63
Query: 62 GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
G+DPP YLDGTL GDFGFDPLGLGEDPESL+WYVQAELVH+RFAM GV GIL TDLLRV
Sbjct: 64 GLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVA 123
Query: 122 GIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
G+ +P+W+EAGAV+++FA+T TL +VQLLLMG+AET+RYMD++SPGSQ KEGSFFGLEA
Sbjct: 124 GVNSIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAKEGSFFGLEA 183
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
+L GLEPGYPGGPLLNPLGLAKDI++AREWKLKEIKNGRLAMVA+LGIFVQASVTHVGPI
Sbjct: 184 SLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVGPI 243
Query: 242 DNILEHLSDPWHKTIIQTLANSGS 265
DN++EHLS+PWHKTIIQ LA+S S
Sbjct: 244 DNLVEHLSNPWHKTIIQILASSSS 267
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/253 (73%), Positives = 212/253 (83%), Gaps = 8/253 (3%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L PSSSS + + S FL +S + R L +++ R TWLPG+DPPP+LD
Sbjct: 13 LHPSSSS--------YTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLD 64
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
GTLAGDFGFDPLGLGEDP+SL+WYVQAELVH RFAM GV+G+L TDLLRVTGI ELPVWY
Sbjct: 65 GTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWY 124
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
AGAVE+ FA+ RTLFIVQLLLMGF ETKRYMD+ SPGSQ +EG+FFGLEAA +GLEPGY
Sbjct: 125 NAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGY 184
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 250
PGGPLLNPLG+AKDI+NA +WKLKEIKNGRLAMVAMLGIFVQA VTH GPIDN++EHLS+
Sbjct: 185 PGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSN 244
Query: 251 PWHKTIIQTLANS 263
PWHKTIIQTL++S
Sbjct: 245 PWHKTIIQTLSSS 257
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/212 (85%), Positives = 201/212 (94%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
Q RPTWLPG+DPP YLDGTLAGD+GFDPLGLGEDPESLRWYVQAELVHARFAM GV GIL
Sbjct: 2 QPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGIL 61
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
TDLLRVTG+ ++PVW+EAGAV+++F +T+TL IVQLLLMGFAETKRYMD+ISPGSQ KE
Sbjct: 62 VTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKE 121
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
GSFFGLEA+ EGLEPGYPGGPLLNPLGLAKDI+NARE KLKEIKNGRLAMVA+LGIFVQA
Sbjct: 122 GSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQA 181
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
SVTHVGPIDN++EHLS+PWHKT+IQTLA+SGS
Sbjct: 182 SVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 213
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/251 (76%), Positives = 210/251 (83%), Gaps = 17/251 (6%)
Query: 30 GITSAFLPAKSGT----TRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTLAG 75
GIT FL + T TRR + VRA +R TWLPG+DPPPYLDG LAG
Sbjct: 8 GITGGFLHQRRDTSSVITRRI--SSVRAAGGGINPTVAVERATWLPGLDPPPYLDGKLAG 65
Query: 76 DFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAV 135
D+GFDPLGLGEDPESLRWYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV
Sbjct: 66 DYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAV 125
Query: 136 EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGP 194
+F FAST+TL +VQ LLMGFAETKRY+DY+SPGSQ KEGS FFG+EAALEGLEPGYPGGP
Sbjct: 126 KFDFASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFFGIEAALEGLEPGYPGGP 185
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHK 254
LLNPLGLAKDI+NA +WKLKEIKNGRLAM+AMLG FVQASVTH GPIDN++EHLS+PWHK
Sbjct: 186 LLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHK 245
Query: 255 TIIQTLANSGS 265
TIIQTL S S
Sbjct: 246 TIIQTLFTSTS 256
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/249 (75%), Positives = 208/249 (83%), Gaps = 13/249 (5%)
Query: 30 GITSAFL----PAKSGTTRRYLATVVR--------AQQRPTWLPGVDPPPYLDGTLAGDF 77
GIT FL A S TRR + A +R TWLPG++PPPYLDG LAGD+
Sbjct: 8 GITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDY 67
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV+F
Sbjct: 68 GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF 127
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGPLL 196
FAST+TL +VQ LLMGFAETKRYMD++SPGSQ KEGS FFGLEAALEGLEPGYPGGPLL
Sbjct: 128 DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLL 187
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
NPLGLAKD++NA +WKLKEIKNGRLAM+AMLG FVQASVTH GPIDN++EHLS+PWHKTI
Sbjct: 188 NPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
Query: 257 IQTLANSGS 265
IQTL S S
Sbjct: 248 IQTLFTSTS 256
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/214 (83%), Positives = 197/214 (92%), Gaps = 1/214 (0%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
A +R TWLPG++PPPYLDG LAGD+GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGI
Sbjct: 35 AVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 94
Query: 113 LFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
LFTDLLR TGIR LPVWYEAGAV+F FAST+TL +VQ LLMGFAETKRYMD++SPGSQ K
Sbjct: 95 LFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAK 154
Query: 173 EGS-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
EGS FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NA +WKLKEIKNGRLAM+AMLG FV
Sbjct: 155 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 214
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
QASVTH GPIDN++EHLS+PWHKTIIQTL S S
Sbjct: 215 QASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 248
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/249 (75%), Positives = 207/249 (83%), Gaps = 13/249 (5%)
Query: 30 GITSAFL----PAKSGTTRRYLATVVR--------AQQRPTWLPGVDPPPYLDGTLAGDF 77
GIT FL A S TRR + A +R TWLPG++PPPYLDG LAGD+
Sbjct: 8 GITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDY 67
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV+F
Sbjct: 68 GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF 127
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGPLL 196
FA T+TL +VQ LLMGFAETKRYMD++SPGSQ KEGS FFGLEAALEGLEPGYPGGPLL
Sbjct: 128 DFACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLL 187
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
NPLGLAKD++NA +WKLKEIKNGRLAM+AMLG FVQASVTH GPIDN++EHLS+PWHKTI
Sbjct: 188 NPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
Query: 257 IQTLANSGS 265
IQTL S S
Sbjct: 248 IQTLFTSTS 256
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/249 (75%), Positives = 207/249 (83%), Gaps = 13/249 (5%)
Query: 30 GITSAFL----PAKSGTTRRYLATVVR--------AQQRPTWLPGVDPPPYLDGTLAGDF 77
GIT FL A S TRR + A +R TWLPG++PPPYLDG LAGD+
Sbjct: 8 GITGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDY 67
Query: 78 GFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
GFDPLGLGEDPESL+WYVQAELVH+RFAM GVAGILFTDLLR TGIR LPVWYEAGAV+F
Sbjct: 68 GFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKF 127
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS-FFGLEAALEGLEPGYPGGPLL 196
FAST+TL +VQ LLMGFAETKRYMD++SPGSQ KEGS FFG+EAALEGLEPGYPGGPLL
Sbjct: 128 DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLL 187
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
NPLGLAKD++NA +WKLKEIKNGRLAM+AMLG FVQASVTH GPIDN++EHLS+PWH TI
Sbjct: 188 NPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHXTI 247
Query: 257 IQTLANSGS 265
IQTL S S
Sbjct: 248 IQTLFTSTS 256
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/209 (78%), Positives = 183/209 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QRPTWLPG+DPPP+LDGTL GDFGFDPLGLGEDP SL+WYVQAELVH RFAMAGVAGILF
Sbjct: 58 QRPTWLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILF 117
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F+FA+T LF VQLLLMGFAETKRYMD+ +PGSQ +EG
Sbjct: 118 TDLLRVSGNSDLPVWFEAGAAKFEFANTTALFFVQLLLMGFAETKRYMDFKNPGSQAEEG 177
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNGRLAMVAMLG VQAS
Sbjct: 178 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMVQAS 237
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VTH GPIDN+L HLSDP++K II ++S
Sbjct: 238 VTHAGPIDNLLTHLSDPFNKNIIHAFSSS 266
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 165/214 (77%), Positives = 187/214 (87%), Gaps = 1/214 (0%)
Query: 51 VRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
VRA +R TWLPG+DPPP+LDGTL GDFGFDPLGLGE+P +L+WYVQAELVH RFAMAGV
Sbjct: 48 VRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGV 107
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGFAETKRYMD+I+PGS
Sbjct: 108 AGILATDLIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGS 167
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
Q +EG+F G+EAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNGRLAMVAMLG
Sbjct: 168 QAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGF 227
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VQASVTHVGPIDN+L HLSDP++K II TL++S
Sbjct: 228 IVQASVTHVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/209 (77%), Positives = 182/209 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QR TWLPG+DPPPYLDGTL GDFGFDPLGLGE+PE+L+WYVQAELVH RFAMAGVAGILF
Sbjct: 107 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 166
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+ +PGSQ +EG
Sbjct: 167 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 226
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVAMLG VQAS
Sbjct: 227 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQAS 286
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VTH GPIDN+L HLSDP++K II T ++S
Sbjct: 287 VTHAGPIDNLLTHLSDPFNKNIIHTFSSS 315
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/214 (76%), Positives = 186/214 (86%), Gaps = 1/214 (0%)
Query: 51 VRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
VRA +R TWLPG+DPPP+LDGTL GDFGFDPLGLGE+P +L+WYVQAELVH RFAMAGV
Sbjct: 48 VRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGV 107
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL TD +RV+GI LPVW+EAGA +F FA+T LF VQLLLMGFAETKRYMD+I+PGS
Sbjct: 108 AGILATDFIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPGS 167
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
Q +EG+F G+EAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNGRLAMVAMLG
Sbjct: 168 QAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGF 227
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VQASVTHVGPIDN+L HLSDP++K II TL++S
Sbjct: 228 IVQASVTHVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/209 (77%), Positives = 182/209 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QR TWLPG+DPPPYLDGTL GDFGFDPLGLGE+PE+L+WYVQAELVH RFAMAGVAGILF
Sbjct: 61 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+ +PGSQ +EG
Sbjct: 121 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 180
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVAMLG VQAS
Sbjct: 181 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQAS 240
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VTH GPIDN+L HLSDP++K II T ++S
Sbjct: 241 VTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/209 (77%), Positives = 182/209 (87%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
QR TWLPG+DPPPYLDGTL GDFGFDPLGLGE+PE+L+WYVQAELVH RFAMAGVAGILF
Sbjct: 61 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+ +PGSQ +EG
Sbjct: 121 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 180
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVAMLG VQAS
Sbjct: 181 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQAS 240
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VTH GPIDN+L HLSDP++K II T ++S
Sbjct: 241 VTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/228 (71%), Positives = 184/228 (80%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
+P + R V +R TWLPG+DPP YLDGTL GD+GFDPLGLGE PE L+WYV
Sbjct: 30 MPGHHAESPRARFAVRAIAERATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYV 89
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
QAELVH RFAMAGVAGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGF
Sbjct: 90 QAELVHCRFAMAGVAGILGTDLIRVSGIGNLPVWFEAGATKFDFANTTALFFVQLLLMGF 149
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
ETKRYMD++SPGSQ KEG+F G+EA+LEGL+PGYPGGPL NP+GLAKDI NA E KLKE
Sbjct: 150 VETKRYMDFVSPGSQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANEVKLKE 209
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
IKNGRLAMVAMLG VQASVTH GPIDN+L HLSDP++K II L S
Sbjct: 210 IKNGRLAMVAMLGFIVQASVTHAGPIDNLLTHLSDPFNKNIIHALTLS 257
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/208 (75%), Positives = 180/208 (86%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+R TWLPG+DPPPYLDGTL GD+GFDPLGLGE+P L+WYVQAELVH RFAMAGVAGIL
Sbjct: 51 ERATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILG 110
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGF ETKRYMD ++PGSQ +EG
Sbjct: 111 TDLIRVSGISNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDIVNPGSQAEEG 170
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
+F G+EA+LEGL+PGYPGGPL NP+GLAKDI+NA E KLKEIKNGRLAMVAMLG FVQAS
Sbjct: 171 TFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFFVQAS 230
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLAN 262
VTHVGPIDN+L HLSDP++ II +
Sbjct: 231 VTHVGPIDNLLIHLSDPFNNNIIHAFTS 258
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 325 bits (834), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 154/236 (65%), Positives = 188/236 (79%), Gaps = 7/236 (2%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ-----QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+S + ++ R+L+ +RAQ +RP WLPG+ PP +LDG+LAGDFGFDPL LG+
Sbjct: 16 SSCYPRIRNAHCARFLS--IRAQSSGSDERPIWLPGLSPPQHLDGSLAGDFGFDPLELGK 73
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+LRWYVQAELVH+RFAMAG+AGIL TDLLR G R+LPVWYEAGA EF+FA TRTLF
Sbjct: 74 DPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRDLPVWYEAGATEFEFADTRTLF 133
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+VQL+LMG+AET+RY DYISPGSQ + +F G E AL GL+ GYPGGP +P GL +DI
Sbjct: 134 VVQLILMGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDIN 193
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
NAR K KE+KNGRLAMVA+LG+FVQA T GPIDN+L H+SDPWH TI+QTL++
Sbjct: 194 NARTLKEKELKNGRLAMVAILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLSH 249
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/208 (71%), Positives = 168/208 (80%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+RP WLPG PP +LDGTLAGDFGFDPLGLG+DP+ LRWYVQAELVH+RFAMAGVAGILF
Sbjct: 1 ERPLWLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILF 60
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
TDLLR +G ++PVW+EAGA +F FA T TLF+VQL+LMGF ETKR+MD + PGSQ E
Sbjct: 61 TDLLRASGRTDIPVWFEAGATKFDFADTTTLFVVQLILMGFVETKRWMDIVKPGSQAAED 120
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
SFFG EAA EGLE GYPGGPL NPLG A D + + KEIKNGRLAMVAM+G VQA
Sbjct: 121 SFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGFMVQAY 180
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLAN 262
VT GPI+N+L HLSDP H TIIQ +AN
Sbjct: 181 VTKTGPIENLLTHLSDPVHNTIIQRIAN 208
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 134/158 (84%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
MAGVAGILFTDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+
Sbjct: 1 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 60
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVA
Sbjct: 61 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVA 120
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
MLG VQASVTH GPIDN+L HLSDP++K II T ++S
Sbjct: 121 MLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 158
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/223 (53%), Positives = 147/223 (65%), Gaps = 11/223 (4%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD----GTLAGDFGFDPLGLGEDPESLRW 93
A+S ++R+ + T V R +WLPG P +LD LAG+FGFDPLGLG+DP +LRW
Sbjct: 12 ARSASSRKSVVTCV---ARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRW 68
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLL 151
Y QAEL+H R AMAGVAGIL LL G +P WY+AG A+E FA +L VQL
Sbjct: 69 YQQAELIHCRTAMAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGSLLAVQLF 128
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
L GF E KR+ D PGSQ + GSF G EA+L+G E GYPGGP +PLGL+K+ +
Sbjct: 129 LCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPF-DPLGLSKEADKWAD 187
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
WKLKE+KNGRLAM+A LG Q T GP+DN+ HL DPWH
Sbjct: 188 WKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWH 230
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/223 (53%), Positives = 144/223 (64%), Gaps = 11/223 (4%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDG----TLAGDFGFDPLGLGEDPESLRW 93
A+ +R+ + T V R +WLPG + P +LD +AG+FGFDPLGLG+D E+LRW
Sbjct: 12 ARPAVSRKAVVTCV---ARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRW 68
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLL 151
Y QAELVHAR AM VAGIL LL G +P WY+AG A+E FA L VQL
Sbjct: 69 YQQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFGALLAVQLF 128
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
L GF E KR+ D+ PGSQ ++GSF G E A G + GYPGG + +PLGL+KD +
Sbjct: 129 LTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGG-IFDPLGLSKDADKLAD 187
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
WKLKEIKNGRLAMVA LG Q T GPIDN+ HL+DPWH
Sbjct: 188 WKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWH 230
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 146/223 (65%), Gaps = 11/223 (4%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDG----TLAGDFGFDPLGLGEDPESLRW 93
A+S ++R+ + T V R +WLPG P +LD LAG+FGFDPLGLG+DP +L W
Sbjct: 6 ARSASSRKSVVTCV---ARQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAW 62
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLL 151
Y QAEL+H R AM GVAGIL LL G +P WY+AG A+E FA TL VQL
Sbjct: 63 YQQAELIHCRTAMTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGTLLAVQLF 122
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
L GF E KR+ D PGSQ + GSF G E++L+G E GYPGGP +PLGL+K+ +
Sbjct: 123 LCGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPF-DPLGLSKEADKWAD 181
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
WKLKE+KNGRLAM+A LG Q T GP+DN++ HL DPWH
Sbjct: 182 WKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWH 224
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 143/233 (61%), Gaps = 4/233 (1%)
Query: 30 GITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE 89
G ++FL TR A +RP W PG PPP+LDG+L GDFGFDP GLG DPE
Sbjct: 22 GARTSFLGTGKAATRSSFTVRTAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPE 81
Query: 90 SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQ 149
SLRW VQAELVH R+AM G AGI +LL GI P WY AG E+ F T TLF+V+
Sbjct: 82 SLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFVVE 140
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNA 208
L+L+G+AE +R+ D I PGS + F L G + GYPGG +PLG
Sbjct: 141 LILIGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGNGSPEKL 198
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
+E + KEIKNGRLAM+A++G + QA T GPIDN+ HL+DP H TI + A
Sbjct: 199 KELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFA 251
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 161/268 (60%), Gaps = 12/268 (4%)
Query: 4 AVGRGFLLQPSSSS--SFICNDVNKSS----IGITSAFLPAKSGTTRRYLATVVRAQQ-- 55
+V ++ PSSSS + + N+V + +G + K+ RR TV +A Q
Sbjct: 13 SVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRRAAVTVSQAVQTE 72
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFT 115
RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQAELVH R+AM G AGI
Sbjct: 73 RPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIP 132
Query: 116 DLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
+L GI P WY AG +E+ F TLF+V+++ +G+AE +R+ D + PGS +
Sbjct: 133 ELCTKLGILNTPSWYTAGELEY-FTDKTTLFVVEMIFLGWAEGRRWADILEPGSVNTDPI 191
Query: 176 FFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G + QA
Sbjct: 192 F--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAE 249
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLAN 262
T GPIDN+L HL+DP H TI ++
Sbjct: 250 YTGTGPIDNLLAHLADPGHATIFAAFSS 277
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 146/235 (62%), Gaps = 6/235 (2%)
Query: 30 GITSAFLPA--KSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
G ++FL A K+ +R A A +RP W PG PPP+LDG+L GDFGFDP GLG D
Sbjct: 22 GARTSFLGAAGKAAASRTSFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSD 81
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PESLRW VQAELVH R+AM G AGI +LL GI P WY AG E+ F T TLFI
Sbjct: 82 PESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFI 140
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIR 206
V+L+L+G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 141 VELILIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGTGSPE 198
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
+E + KEIKNGRLAM+A++G + QA T GPIDN+ HL+DP H TI + A
Sbjct: 199 KLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFA 253
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 139/224 (62%), Gaps = 4/224 (1%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A+S + R A A RP W PG PPP+LDG+L GDFGFDPLGLG DPESLRW VQA
Sbjct: 40 AESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQA 99
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELVH R+AM G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE
Sbjct: 100 ELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQY-FTDTTTLFIIELILIGWAE 158
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEI 216
+R+ D I PG + F L G + GYPGG +PLG +E + KEI
Sbjct: 159 GRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEI 216
Query: 217 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KNGRLAM+A++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 217 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 260
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 148/220 (67%), Gaps = 6/220 (2%)
Query: 38 AKSGTTRRYLATV-VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
A G R+ +V V+A RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQ
Sbjct: 11 AAFGVARQTPRSVRVKAATRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQ 70
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMG 154
AELVH RFAM G AGI+ T + G+ P WY+AG VE TL I QL LMG
Sbjct: 71 AELVHGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLLITQLYLMG 129
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKL 213
+AETKR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K
Sbjct: 130 WAETKRWYDFKNPGSQG-DGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQ 188
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
KEIKNGRLAM+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 189 KEIKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNH 228
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 163/251 (64%), Gaps = 20/251 (7%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PSSSS+F+ + S +G T A + TRR L +A+ + WLPG+ P YLD
Sbjct: 13 LRPSSSSAFLGH---SSRLGRT-----ATASPTRRSL----KAEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++L G+ P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GY
Sbjct: 121 DAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 250
PG + NPL A + E K KE+ NGRLAM+A L +Q +VT GP DN+L+HLSD
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSD 232
Query: 251 PWHKTIIQTLA 261
PWH TIIQTL+
Sbjct: 233 PWHNTIIQTLS 243
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 153/252 (60%), Gaps = 15/252 (5%)
Query: 22 NDVNKSSIGITSA-FLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLD 70
+ +N S++G T A FL K T R++ + VV ++ RP W PG PPP+LD
Sbjct: 20 SQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVADPDRPLWFPGSTPPPWLD 79
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG DPE+LRW VQAELVH R+AM G AGI + L GI P WY
Sbjct: 80 GSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 139
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG +E+ F T TLFI++L+ +G+AE +R+ D + PG + F L G + GY
Sbjct: 140 DAGKLEY-FTDTTTLFIIELIFIGWAEGRRWADILKPGCVNTDPIF--PNNRLTGTDVGY 196
Query: 191 PGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
PGG +PLG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 250 DPWHKTIIQTLA 261
DP H T+ +
Sbjct: 257 DPGHATVFAAFS 268
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 145/216 (67%), Gaps = 7/216 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQAELV
Sbjct: 15 SARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVK 192
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
NGRLAM+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 193 NGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNH 228
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 145/216 (67%), Gaps = 7/216 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQAELV
Sbjct: 15 SARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVK 192
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
NGRLAM+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 193 NGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNH 228
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 156/242 (64%), Gaps = 18/242 (7%)
Query: 26 KSSIGITSAFLP------AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+SS + S FL A++ TTRR VRA+ + WLPG+ P YL+G+L GD GF
Sbjct: 14 RSSASLKSTFLGQSSTRLARAPTTRRN----VRAEAKGEWLPGLPSPTYLNGSLPGDNGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY+AG + F
Sbjct: 70 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-F 128
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PG ++ F +L E GYPG + NPL
Sbjct: 129 ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGYPGS-VFNPL 185
Query: 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
+ E K KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TIIQT
Sbjct: 186 NFEPTL----EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQT 241
Query: 260 LA 261
L+
Sbjct: 242 LS 243
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 135/215 (62%), Gaps = 4/215 (1%)
Query: 47 LATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
A A +RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM
Sbjct: 44 FAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 103
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
G AGI +LL GI P WY AG + FA T TLFIV+L+L+G+AE +R+ D I
Sbjct: 104 LGAAGIFIPELLTKIGILNTPSWYTAGEQTY-FADTTTLFIVELILIGWAEGRRWADIIK 162
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVA 225
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+A
Sbjct: 163 PGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAMLA 220
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
++G + QA T GPIDN+ HL+DP H TI +
Sbjct: 221 VMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAF 255
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 142/216 (65%), Gaps = 7/216 (3%)
Query: 43 TRRYLATVVRAQ--QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG P +LDGTLAGD+GFDPL LG++ E+LRWYVQAELV
Sbjct: 15 SARQAPRAVRAQALTRPVWFPGNPAPAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLIVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAEYKQKEVK 192
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
NGRLAM+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 193 NGRLAMIACLGFAAQYAATGKGPLDNLSDHLADPNH 228
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 138/207 (66%), Gaps = 4/207 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP WLPG + P +LDG+L GD+GFDPL L +P L W VQAELVH R+AM G AGI
Sbjct: 64 DRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFI 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+LL GI P WY+AG + FA TLFIV+LLLM +AE++R+ D PGS +
Sbjct: 124 PELLTKIGILNTPSWYKAGDATY-FADQGTLFIVELLLMAWAESRRWADIARPGSVNTDP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMVAMLGIFVQA 233
F L G + GYPGG +PLG + +E + KE+KNGRLAM+A+LG FVQA
Sbjct: 183 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQA 240
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTL 260
+VTHVGPIDN+ HL+DP+H TI+Q+L
Sbjct: 241 NVTHVGPIDNLFAHLADPYHTTILQSL 267
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 23/240 (9%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT------------WLPGVDPPPYLDGTLAGDFGFD 80
SAFL +G++ LA VR P WLPG+ P YL+G+L GD GFD
Sbjct: 20 SAFL---TGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFD 76
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA 140
PLGL EDPESL+WYVQAELV+ R+AM GVAG+L ++L G+ +P WY+AG VE+ FA
Sbjct: 77 PLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FA 135
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
S+ TLF+++ +L + E +R+ D PGS ++ F + +L E GYPGG + NPL
Sbjct: 136 SSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLN 192
Query: 201 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ + E K KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 193 FSPSM----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 154/247 (62%), Gaps = 14/247 (5%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
+S S F+ K +G + P S + R + + + WLPG+ P YLDG+L
Sbjct: 17 ASKSRFLTGSSGK--LGREVSVKPMTSSSYRSFKVEAKKGE----WLPGLSSPSYLDGSL 70
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GD GFDPLGL EDPE+L+WYVQAELV++R+AM GVAG+L ++ GI P WY+AG
Sbjct: 71 PGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAG 130
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GYPGG
Sbjct: 131 KAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KNYSLPPNEVGYPGG 187
Query: 194 PLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
+ NPL A E K KE+ NGRLAM+A LG VQ +VT GP DN+L+H+SDPWH
Sbjct: 188 -IFNPLNFAP----TEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWH 242
Query: 254 KTIIQTL 260
TIIQTL
Sbjct: 243 NTIIQTL 249
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 162/251 (64%), Gaps = 20/251 (7%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PS+S + + +G +S L A++ TTRR VRA+ + WLPG+ P YL+
Sbjct: 13 LRPSAS-------LKSTFLGQSSTRL-ARAPTTRRN----VRAEAKGEWLPGLPSPTYLN 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG + FAS+ TLF+++ +L + E +R+ D +PG ++ F +L E GY
Sbjct: 121 DAGKATY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 250
PG + NPL + E K KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSD
Sbjct: 178 PGS-VFNPLNFEPTL----EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSD 232
Query: 251 PWHKTIIQTLA 261
PWH TIIQTL+
Sbjct: 233 PWHNTIIQTLS 243
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 142/240 (59%), Gaps = 9/240 (3%)
Query: 27 SSIGITSAFLPA-----KSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
++ G ++FL A + R A A RP W PG PPP+LDG+L GDFGFDP
Sbjct: 23 AAAGARTSFLGAGRTKLREAAARPSFAVSAAAPDRPIWFPGSVPPPWLDGSLPGDFGFDP 82
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAS 141
GLG DPESLRW VQAELVH R+AM G AGI + L GI P WY AG ++ F
Sbjct: 83 FGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILSTPSWYTAGEQQY-FTD 141
Query: 142 TRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL 201
T TLFI++L+L+G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 142 TTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGW 199
Query: 202 AK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+E + KEIKNGRLAM+A++G + QA T GPIDN+ HL+DP H I Q
Sbjct: 200 GSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAF 259
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 145/244 (59%), Gaps = 14/244 (5%)
Query: 25 NKSSIGITSAFLPAKSGTTRRYLA--------TVVRAQQ--RPTWLPGVDPPPYLDGTLA 74
N S +G T AFL + + A TV A + RP W PG PPP+LDG+L
Sbjct: 23 NGSPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGL DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D + PGS + F L G + GYPGG
Sbjct: 143 QEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIF--PNNKLTGTDVGYPGGL 199
Query: 195 LLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
+PLG + +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H
Sbjct: 200 WFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 259
Query: 254 KTII 257
T+
Sbjct: 260 ATVF 263
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 145/237 (61%), Gaps = 6/237 (2%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+L+W VQ+ELVH R+AM G AGI +LL GI P WY AG +E+ F TLF
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDKTTLF 162
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DI 205
+V+++ +G+AE +R+ D I PGS + F L G + GYPGG +PLG
Sbjct: 163 VVEMIFLGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSP 220
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+E + KEIKNGRLAM+A++G + QA T GPIDN+L HL+DP H T+ ++
Sbjct: 221 EKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 277
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 140/209 (66%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP WLPG + P +LDG+L GD+GFDPL L +P L W VQAELVH R+AM G AGI
Sbjct: 13 DRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFI 72
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+LL GI P WY+AG + FA TLFIV+LLLM +AE++R+ D PGS +
Sbjct: 73 PELLTKIGILNTPSWYKAGDATY-FADQGTLFIVELLLMAWAESRRWADIARPGSVNTDP 131
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMVAMLGIFVQA 233
F L G + GYPGG +PLG + +E + KE+KNGRLAM+A+LG FVQA
Sbjct: 132 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQA 189
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+VTHVGPIDN+ HL+DP+H TI+Q++++
Sbjct: 190 NVTHVGPIDNLFAHLADPYHTTILQSVSS 218
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 147/219 (67%), Gaps = 12/219 (5%)
Query: 43 TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHA 102
TRR L +A+ + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LRW+VQAELV+
Sbjct: 40 TRRSL----KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNG 95
Query: 103 RFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYM 162
R+AM GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+V+ +L + E +R+
Sbjct: 96 RWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVVEFILFHYVEIRRWQ 154
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 222
D +PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLA
Sbjct: 155 DIKNPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLA 207
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
M+A LG +Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 208 MLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 145/213 (68%), Gaps = 8/213 (3%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD GFDPLGL EDPESL+WYVQAELV+ R+AM
Sbjct: 37 ARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAML 96
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+L ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 97 GVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIKYP 155
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
GS ++ F + +L E GYPGG + NPL + + E K KE+ NGRLAM+A L
Sbjct: 156 GSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLAFL 208
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 209 GFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 241
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 150/230 (65%), Gaps = 14/230 (6%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
+F P+ S + + A ++ WLPG+ P YLDG+L GD GFDPLGL EDPE+L+W
Sbjct: 35 SFRPSTSNNSFKVEA------KKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKW 88
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
Y+QAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L
Sbjct: 89 YIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEY-FASSSTLFVIEFILF 147
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+ E +R+ D +PG ++ F +L E GYPGG + NPL A E K
Sbjct: 148 HYVEIRRWQDIKNPGCVNQDPIF--KNYSLPPNECGYPGG-IFNPLNFAA----TEEAKE 200
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TIIQTL+++
Sbjct: 201 KELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSSN 250
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 132/207 (63%), Gaps = 4/207 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM G AGI
Sbjct: 54 NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I PGS +
Sbjct: 114 PEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDP 172
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G + QA
Sbjct: 173 IF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 230
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTL 260
T GPIDN+ HL+DP H TI Q
Sbjct: 231 EYTGTGPIDNLFAHLADPGHATIFQAF 257
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 148/224 (66%), Gaps = 12/224 (5%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A + TRR L +A+ + WLPG+ P YLDG+L GD GFDPLGL EDPE+LRWYVQA
Sbjct: 40 ATASPTRRSL----KAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQA 95
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELV+ R+AM GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E
Sbjct: 96 ELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVE 154
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
+R+ D +PGS ++ F +L E GYPG + NPL A + E K KE+
Sbjct: 155 IRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELA 207
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
NGRLAM+A L +Q +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 NGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 251
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 135/215 (62%), Gaps = 7/215 (3%)
Query: 50 VVRA---QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
VRA RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM
Sbjct: 56 AVRAAADSDRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 115
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 116 LGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIK 174
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVA 225
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+A
Sbjct: 175 PGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 233 VMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 267
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 154/241 (63%), Gaps = 18/241 (7%)
Query: 27 SSIGITSAFLP------AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFD 80
SS + S FL A++ TTRR VRA+ + WLPG+ P YL+G+L GD GFD
Sbjct: 15 SSASLKSTFLGQSSTRLARAPTTRRN----VRAEAKGEWLPGLPSPTYLNGSLPGDNGFD 70
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA 140
PLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY+AG + FA
Sbjct: 71 PLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FA 129
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
S+ TLF+++ +L + E +++ D +PG ++ F L E GYPG + NPL
Sbjct: 130 SSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFKSYR--LPSDECGYPGS-VFNPLN 186
Query: 201 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ E K KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 187 FEPTL----EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTL 242
Query: 261 A 261
+
Sbjct: 243 S 243
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 144/237 (60%), Gaps = 6/237 (2%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+L+W VQ+ELVH R+AM G AGI +LL GI P WY AG E+ F TLF
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEY-FTDKTTLF 162
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DI 205
+V+++ +G+AE +R+ D I PGS + F L G + GYPGG +PLG
Sbjct: 163 VVEMIFLGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSP 220
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+E + KEIKNGRLAM+A++G + QA T GPIDN+L HL+DP H T+ ++
Sbjct: 221 EKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 277
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 146/245 (59%), Gaps = 10/245 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 29 STKASFLSG--RKLKVNSFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 82
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGLG DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 83 PGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 142
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLF+V+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 143 ELEY-FTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 199
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+PLG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 200 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 259
Query: 253 HKTII 257
H TI
Sbjct: 260 HATIF 264
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 146/245 (59%), Gaps = 10/245 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 40 STKASFLSG--RKLKVNSFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 93
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGLG DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 94 PGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 153
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLF+V+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 154 ELEY-FTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 210
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+PLG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 211 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 270
Query: 253 HKTII 257
H TI
Sbjct: 271 HATIF 275
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 154/245 (62%), Gaps = 18/245 (7%)
Query: 29 IGITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD G
Sbjct: 16 CGLKSRFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNG 75
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L ++ GI +P WY+AG E+
Sbjct: 76 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEY- 134
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
FAS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NP
Sbjct: 135 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNP 191
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
L A + E K KEI NGRLAM+A LG +Q +VT GP DN+L+HLSDPWH TI+Q
Sbjct: 192 LNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHLSDPWHNTIVQ 247
Query: 259 TLANS 263
TL+ S
Sbjct: 248 TLSGS 252
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 8/206 (3%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YLDG+L GD GFDPLGL EDPE+L+WYVQAELV++R+AM GVAG+L
Sbjct: 49 KKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLL 108
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 109 PEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F +L E GYPGG + NPL A E K KE+ NGRLAM+A LG VQ +
Sbjct: 168 IF--KNYSLPPNEVGYPGG-IFNPLNFAP----TEEAKEKELANGRLAMLAFLGFIVQHN 220
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTL 260
VT GP DN+L+H+SDPWH TIIQTL
Sbjct: 221 VTGKGPFDNLLQHISDPWHNTIIQTL 246
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 148/229 (64%), Gaps = 12/229 (5%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
+F P+ S + + + Q WLPG+ P YLDG+L GD GFDPLGL EDPE+L+W
Sbjct: 35 SFRPSTSSSYNSFKVEAKKGQ----WLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKW 90
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
++QAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L
Sbjct: 91 FIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEY-FASSSTLFVIEFILF 149
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+ E +R+ D +PGS ++ F +L + GYPGG + NPL A E K
Sbjct: 150 HYVEIRRWQDIKNPGSVNQDPIF--KSYSLPPNKCGYPGG-IFNPLNFAP----TEEAKE 202
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
KE+ NGRLAM+A LG VQ +VT GP DN+L+HL DPWH TIIQTL+N
Sbjct: 203 KELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLFDPWHNTIIQTLSN 251
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 135/217 (62%), Gaps = 7/217 (3%)
Query: 45 RYLATVVRA---QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
R + T V A RP W PG PPP+LDGTL GDFGFDPLGLG DPESLRW VQAELVH
Sbjct: 48 RSMGTTVCAVAEPDRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVH 107
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
R+AM G AGI + L G+ P WY AG +E+ F T TLFIV+L +G+AE +R+
Sbjct: 108 CRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEY-FTDTTTLFIVELFFIGWAEGRRW 166
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGR 220
D I PG + F L G + GYPGG +PLG + ++ + KEIKNGR
Sbjct: 167 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGR 224
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
LAM+A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 225 LAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIF 261
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 25 NKSSIGITSAFLPAK--------SGTTRRYLATV--VRAQQRPTWLPGVDPPPYLDGTLA 74
N S G + AFL K S + R +TV V RP W PG PPP+LDG+L
Sbjct: 23 NGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGLG DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 143 QEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGL 199
Query: 195 LLNPLGL-AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
+PLG + + +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 259
Query: 254 KTII 257
TI
Sbjct: 260 ATIF 263
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+A+ + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG
Sbjct: 45 KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+L ++L G+ P WY+AG E+ FAS+ TLF+V+ +L + E +R+ D +PGS
Sbjct: 105 MLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVVEFILFXYVEIRRWQDIKNPGSVN 163
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A LG +
Sbjct: 164 QDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLAFLGFLI 216
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 217 QHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 161/251 (64%), Gaps = 20/251 (7%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PS+S + + +G +S L A++ TTRR VRA+ + WLPG+ P YL+
Sbjct: 13 LRPSAS-------LKSTFLGQSSTRL-ARAPTTRRN----VRAEAKGEWLPGLPSPTYLN 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG + FAS+ TLF+++ +L E +R+ D +PG ++ F +L E GY
Sbjct: 121 DAGKATY-FASSSTLFVIEFILFHSVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 250
PG + NPL + E K KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSD
Sbjct: 178 PGS-VFNPLNFEPTL----EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSD 232
Query: 251 PWHKTIIQTLA 261
PWH TIIQTL+
Sbjct: 233 PWHNTIIQTLS 243
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 146/219 (66%), Gaps = 12/219 (5%)
Query: 43 TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHA 102
TRR L +A+ + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LRW+VQAELV+
Sbjct: 40 TRRSL----KAEAKGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNG 95
Query: 103 RFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYM 162
R+AM GVAG+L ++L G+ P WY+A E+ FAS+ TLF+V+ +L + E +R+
Sbjct: 96 RWAMLGVAGMLIPEVLTKAGLINAPQWYDASKSEY-FASSSTLFVVEFILFHYVEIRRWQ 154
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 222
D +PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLA
Sbjct: 155 DIKNPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLA 207
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
M+A LG +Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 208 MLAFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 135/220 (61%), Gaps = 5/220 (2%)
Query: 40 SGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
S T R + V A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAE
Sbjct: 47 SPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAE 106
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LVH R+AM G AGI + L GI P WY AG VE+ F T TLFIV+L +G+AE
Sbjct: 107 LVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEY-FTDTTTLFIVELFFIGWAEG 165
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
+R+ D + PG + F L G + GYPGG +PLG +E + KEIK
Sbjct: 166 RRWADILKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIK 223
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
NGRLAM+A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 263
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 135/220 (61%), Gaps = 5/220 (2%)
Query: 40 SGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
S T R + V A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAE
Sbjct: 47 SPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAE 106
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
LVH R+AM G AGI + L GI P WY AG VE+ F T TLFIV+L +G+AE
Sbjct: 107 LVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGEVEY-FTDTTTLFIVELFFIGWAEG 165
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
+R+ D + PG + F L G + GYPGG +PLG +E + KEIK
Sbjct: 166 RRWADILKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIK 223
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
NGRLAM+A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 224 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 263
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 145/245 (59%), Gaps = 10/245 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 29 STKASFLSG--RKLKVNNFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 82
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGL DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 83 PGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 142
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLFIV+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 143 ELEY-FTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 199
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+PLG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 200 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 259
Query: 253 HKTII 257
H TI
Sbjct: 260 HATIF 264
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 145/245 (59%), Gaps = 10/245 (4%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
S+ +SF+ K + +A + A+S TT V RP W PG PPP+LDG+L
Sbjct: 40 STKASFLSG--RKLKVNNFTAPVGARSSTT----VCAVAEPDRPLWFPGSTPPPWLDGSL 93
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGL DPESLRW VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 94 PGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 153
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
+E+ F T TLFIV+L +G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 154 ELEY-FTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 210
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+PLG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 211 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 270
Query: 253 HKTII 257
H TI
Sbjct: 271 HATIF 275
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 146/257 (56%), Gaps = 14/257 (5%)
Query: 15 SSSSFICNDVNKSSIGITSA-FLPAKSGTTRRYLA---------TVVRAQQRPTWLPGVD 64
SSS + + +G T A FL K ++Y A V RP W PG
Sbjct: 16 SSSRQVLSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGST 75
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PPP+LDG+L GDFGFDPLGLG DPE+LRW VQAELVH R+AM G AGI + L GI
Sbjct: 76 PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL 135
Query: 125 ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALE 184
P WY AG +E+ F T TLFIV+L +G+AE +R+ D + PG + F L
Sbjct: 136 NTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIF--PNNKLT 192
Query: 185 GLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
G + GYPGG +PLG +E + KEIKNGRLAM+A++G + Q T GPIDN
Sbjct: 193 GTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 252
Query: 244 ILEHLSDPWHKTIIQTL 260
+ HL+DP H T+
Sbjct: 253 LFAHLADPGHATVFSAF 269
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 138/222 (62%), Gaps = 4/222 (1%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
S ++ + +A +RP W PG P +LDG+L GDFGFDPLGLG +PE L+W+VQAE+
Sbjct: 45 SAVSKASFSVRAQATERPLWFPGSTAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEI 104
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
VH R+AM G AGI +LL GI P WY AG + FA TLFIV+LL MG+AE +
Sbjct: 105 VHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQTY-FADQTTLFIVELLFMGWAEGR 163
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKN 218
R+ D + PGS + F L G + GYPGG +PLG A +E + KEIKN
Sbjct: 164 RWADILKPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKN 221
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
GRLAM+A++G + QA T GPIDN+ HL+DP H T+ L
Sbjct: 222 GRLAMLAVMGAWFQAVYTGTGPIDNLFAHLADPGHATVFAAL 263
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 138/222 (62%), Gaps = 5/222 (2%)
Query: 38 AKSGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
A + TR + + A RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQ
Sbjct: 47 APAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQ 106
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
+E+VH R+AM G AGI + L GI P WY AG +E+ F TLFIV+++ +G+A
Sbjct: 107 SEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDKTTLFIVEMIFIGWA 165
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKE 215
E +R+ D I PG + F L G + GYPGG +PLG + +E + KE
Sbjct: 166 EGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKE 223
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
IKNGRLAM+A++G + QA T GPIDN+ HL+DP H TI
Sbjct: 224 IKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIF 265
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 135/222 (60%), Gaps = 6/222 (2%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
T R TV A RP W PG PPP+LDG+L GDFGFDPLGL DPESLRW QAELV
Sbjct: 50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELV 109
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160
H R+AM G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R
Sbjct: 110 HCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRR 168
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNG 219
+ D I PG + F L G + GYPGG +PLG +E + KEIKNG
Sbjct: 169 WADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 226
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
RLAM+A++G + Q T GPIDN+ HL+DP H TI +
Sbjct: 227 RLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 148/238 (62%), Gaps = 18/238 (7%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R L+ P WLPG+ P YLDG+L GD GFDPL
Sbjct: 20 SRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL EDPE+LRWY QAELV+ R+AM GVAG++ ++L GI +P WY+AG E+ FAS+
Sbjct: 80 GLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PGS ++ F + +L + GYPGG + NPL
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPPNDVGYPGG-IFNPLNFE 195
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ ARE KEI NGRLAM+A LG VQ +VT GP DN ++H+SDPWH TI+QTL
Sbjct: 196 PTLE-ARE---KEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTL 249
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 143/213 (67%), Gaps = 8/213 (3%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD GFDPLGL EDPESL+WYVQAELV+ R+AM
Sbjct: 44 ARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAML 103
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+L ++L G ++P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 104 GVAGMLIPEVLTSFGFIDVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIKYP 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
GS ++ F +L E GYPGG + NPL + + E K KE+ NGRLAM+A L
Sbjct: 163 GSVNQDPVF--KNYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLAFL 215
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G VQ +VT GP +N+L+HLSDPWH TIIQT
Sbjct: 216 GFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTF 248
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 144/244 (59%), Gaps = 14/244 (5%)
Query: 25 NKSSIGITSAFLPAKSGTTR--------RYLATVVRAQQ--RPTWLPGVDPPPYLDGTLA 74
N S +G + AFL K R TV A + RP W PG PPP+LDG+L
Sbjct: 22 NGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 81
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGL DPESL+W VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 82 GDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 141
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 142 QEY-FTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGL 198
Query: 195 LLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
+PLG + +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H
Sbjct: 199 WFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGH 258
Query: 254 KTII 257
TI
Sbjct: 259 ATIF 262
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 145/248 (58%), Gaps = 9/248 (3%)
Query: 16 SSSFICNDVNKSSIGITSAFLP----AKSGTTRRYLATVVRAQ-QRPTWLPGVDPPPYLD 70
S ++C N+ P A + TR + + A RP W PG PPP+LD
Sbjct: 22 SEDWVCCGSNQGLFSWGEETEPEEFTAPAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLD 81
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG DPE+L+W VQ+E+VH R+AM G AGI + L GI P WY
Sbjct: 82 GSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 141
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
AG +E+ F TLFIV+++ +G+AE +R+ D I PG + F L G + GY
Sbjct: 142 TAGELEY-FTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGY 198
Query: 191 PGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
PGG +PLG + +E + KEIKNGRLAM+A++G + QA T GPIDN+ HL+
Sbjct: 199 PGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLA 258
Query: 250 DPWHKTII 257
DP H TI
Sbjct: 259 DPGHATIF 266
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 141/243 (58%), Gaps = 14/243 (5%)
Query: 29 IGITSA-FLPAKSGTTRRYLA---------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
+G T A FL K ++Y A V RP W PG PPP+LDG+L GDFG
Sbjct: 27 VGSTKASFLSGKKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFG 86
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGLG DPE+LRW VQAELVH R+AM G AGI + L GI P WY AG +E+
Sbjct: 87 FDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY- 145
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
F T TLFIV+L +G+AE +R+ D + PG + F L G + GYPGG +P
Sbjct: 146 FTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDP 203
Query: 199 LGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
LG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 204 LGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 263
Query: 258 QTL 260
Sbjct: 264 SAF 266
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 156/251 (62%), Gaps = 20/251 (7%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PS+S +N +G +S L S T+RR L R + + WLPG+ P YLD
Sbjct: 13 LRPSAS-------LNSGFLGHSSR-LGLASSTSRRSL----RVEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L +LL G+ P WY
Sbjct: 61 GKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLINAPEWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG + FAS+ TLF+V+ +L + E +R+ D PG ++ F +L E GY
Sbjct: 121 DAGKSTY-FASSSTLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIF--KSYSLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 250
PG + NPL A + E K KEI NGRLAM+A LG VQ +VT GP+DN+ +HLSD
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKEIANGRLAMLAYLGFSVQHAVTGKGPLDNLFQHLSD 232
Query: 251 PWHKTIIQTLA 261
PWH TIIQT +
Sbjct: 233 PWHNTIIQTFS 243
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 152/245 (62%), Gaps = 18/245 (7%)
Query: 29 IGITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD G
Sbjct: 16 CGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNG 75
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+
Sbjct: 76 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY- 134
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
FAS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NP
Sbjct: 135 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNP 191
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
L A + E K KEI NGRLAM+A LG +Q +VT GP DN+L+H+SDPWH TI+Q
Sbjct: 192 LNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 247
Query: 259 TLANS 263
TL +
Sbjct: 248 TLGGN 252
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 144/245 (58%), Gaps = 16/245 (6%)
Query: 25 NKSSIGITSAFLPAKSGTTRRYLATVVRAQ-----------QRPTWLPGVDPPPYLDGTL 73
N S +G + AF P + +A VR + RP W PG PPP+LDG+L
Sbjct: 22 NGSPMGTSKAF-PGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSL 80
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGL DPESL+W VQAELVH R+AM G AGI + L GI P WY AG
Sbjct: 81 PGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 140
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 141 EQEY-FTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGG 197
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+PLG + +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 198 LWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 257
Query: 253 HKTII 257
H TI
Sbjct: 258 HATIF 262
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 150/239 (62%), Gaps = 20/239 (8%)
Query: 33 SAFLPAKSGTTRRYLATV-----------VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S FL SG +R L+ V A+ + WLPG+ P YL+G+L GD GFDP
Sbjct: 20 SRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAK-KGEWLPGLPSPMYLNGSLPGDNGFDP 78
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAS 141
LGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS
Sbjct: 79 LGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FAS 137
Query: 142 TRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL 201
+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPGG + NPL
Sbjct: 138 SSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNF 194
Query: 202 AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A + E K KEI NGRLAM+A LG VQ +VT GP DN+L+H+SDPWH TI+QT
Sbjct: 195 APTL----EAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 249
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 153/242 (63%), Gaps = 18/242 (7%)
Query: 26 KSSIGITSAFLP------AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+SS + S FL A++ TTRR VRA+ + WLPG+ P YL+G+L GD GF
Sbjct: 14 RSSASLKSTFLGQSSTRLARAPTTRRN----VRAEAKGEWLPGLPSPTYLNGSLPGDNGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++L G+ + P WY+AG + F
Sbjct: 70 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-F 128
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PG ++ F +L E GYP PL
Sbjct: 129 ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSY--SLPPHECGYPAAS-STPL 185
Query: 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
+ E K KE+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TIIQT
Sbjct: 186 NFEPTL----EAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQT 241
Query: 260 LA 261
L+
Sbjct: 242 LS 243
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLG 83
S FL R L+ A P+ WLPG+ P YL+G+L GD GFDPLG
Sbjct: 20 SRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLG 79
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSS 138
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
TLF+++ +L + E +R+ D +PG ++ F + +L E GYPGG + NPL A
Sbjct: 139 TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAP 195
Query: 204 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
I E K KE+ NGRLAM+A LG +Q +VT GP DN+L+H+SDPWH TI+QT +
Sbjct: 196 TI----EAKEKELANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHISDPWHNTIVQTFS 249
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 150/242 (61%), Gaps = 20/242 (8%)
Query: 32 TSAFLPAKSGTTRRYLATV------------VRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+A PA S ++ R+L V Q + +WLPG+ P YLDG+LAGD GF
Sbjct: 10 VAALRPAASASSPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQSPAYLDGSLAGDNGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPL L EDPE LRW+VQAELV+ R+AM GVAG+L ++L G+ P WY+AG E F
Sbjct: 70 DPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGK-ETYF 128
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
AS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GYPG + NPL
Sbjct: 129 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPL 185
Query: 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
A + N K KE+ NGRLAM+A LG VQ +VT GP +N+ +HL+DPWH TIIQT
Sbjct: 186 NFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQT 241
Query: 260 LA 261
++
Sbjct: 242 IS 243
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 143/213 (67%), Gaps = 8/213 (3%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD GFDPLGL EDP+SL+WYVQAELV+ R+AM
Sbjct: 44 ARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAML 103
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+L ++L G ++P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 104 GVAGMLIPEVLTSFGFIDVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIKYP 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
GS ++ F +L E GYPGG + NPL + + E K KE+ NGRLAM+A L
Sbjct: 163 GSVNQDPVF--KNYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLAFL 215
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G VQ +VT GP +N+L+HLSDPWH TIIQT
Sbjct: 216 GFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTF 248
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 142/207 (68%), Gaps = 8/207 (3%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL+G+L GD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 51 KKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 110
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 111 PEVFTKIGIINVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 169
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F + +L E GYPGG + NPL A + E K KE+ NGRLAM+A LG +Q +
Sbjct: 170 IF--KQYSLPPNEVGYPGG-IFNPLNFAPTL----EAKEKELANGRLAMLAFLGFVIQHN 222
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLA 261
VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 223 VTGKGPFDNLLQHLSDPWHNTIIQTFS 249
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 151/221 (68%), Gaps = 9/221 (4%)
Query: 41 GTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
G++ + + V A+ + WLPG+ P YL+G+LAGD GFDPLGL EDPE+L+W+VQAELV
Sbjct: 40 GSSSKTASFKVEAK-KGEWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELV 98
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160
+ R+AM GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R
Sbjct: 99 NGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRR 157
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
+ D +PGS ++ F + +L E GYPGG + NPL A + E K KE+ NGR
Sbjct: 158 WQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAPTV----EAKEKELANGR 210
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
LAM+A LG +Q +VT GP +N+L+HLSDPWH TI+QTL+
Sbjct: 211 LAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 251
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 159 KRYMDYISPGSQTKEGSFFGLEAA----LEGL-EPGYPGGPL-----LNPLGLAKDIRNA 208
R + + S GS +K SF +EA L GL PGY G L +PLGLA+D N
Sbjct: 31 NRELSFKSIGSSSKTASF-KVEAKKGEWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENL 89
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
+ + E+ NGR AM+ + G+ + T +G I+
Sbjct: 90 KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 149/230 (64%), Gaps = 13/230 (5%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLR 92
S+ L S +TRR L R + + WLPG+ P YLDG+LAGD GFDPLGL EDPE+LR
Sbjct: 27 SSRLGRASSSTRRSL----RVEAKGEWLPGLASPAYLDGSLAGDNGFDPLGLAEDPENLR 82
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLL 152
WYVQAELV+AR+AM GVAG+L ++L GI P WY+AG + FAS+ TLF+++ +L
Sbjct: 83 WYVQAELVNARWAMLGVAGVLVPEVLTKIGIINAPQWYDAGKSTY-FASSSTLFVIEFIL 141
Query: 153 MGFAETKRYMDYI-SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
+ E +R+ D I +PG ++ F +L E GYPG + NPL + E
Sbjct: 142 FHYVEIRRWQDIIKNPGCVNQDPIF--KNYSLPPHECGYPGS-VFNPLNFEPTL----EA 194
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
K KE+ NGRLAM+A LG VQ +T GP +N+L+HL DPWH TIIQTL+
Sbjct: 195 KEKELANGRLAMLAFLGFMVQHGITGKGPFENLLQHLFDPWHNTIIQTLS 244
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 16/237 (6%)
Query: 25 NKSSIGITSAFLPAKSGTTR---RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
+KS++ A K+ T R R++A V A R W PG P P+LDG+L GDFGFDP
Sbjct: 13 SKSAVAARPAAFSGKARTARVQARFVA--VSAADRQVWFPGNAPAPHLDGSLPGDFGFDP 70
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAV------ 135
L LG DP+ L+W+ QAELVH R AM VAGILF + G+ +P WY+AG+V
Sbjct: 71 LSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNIPQWYDAGSVWVQNNP 130
Query: 136 EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
F FA+ L +Q++L G+ ETKR++D+ +PGSQ +GSF G+ +G+ GYPGG L
Sbjct: 131 NFPFAA---LLFIQIILTGWVETKRWLDFKNPGSQA-DGSFLGVTDDFKGVANGYPGGKL 186
Query: 196 LNPLGLAKDIRNA-REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
+P GL++ ++++ EIKNGRLAMVA LG Q + T GPIDN+ +HL++P
Sbjct: 187 FDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAATGKGPIDNLADHLANP 243
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 148/229 (64%), Gaps = 12/229 (5%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLR 92
S+ L S +TRR L R + + WLPG+ P YL+G+L GD GFDPLGL EDPE+LR
Sbjct: 27 SSRLGRASSSTRRSL----RVEAKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLR 82
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLL 152
WYVQAELV+AR+AM GVAG+L ++L GI P+WY+AG + FAS+ TLF+++ +L
Sbjct: 83 WYVQAELVNARWAMLGVAGMLLPEVLTKIGIINAPLWYDAGKSTY-FASSSTLFVIEFIL 141
Query: 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 212
+ E +R+ D +PG ++ F +L E GYPG + NPL + E K
Sbjct: 142 FHYVEIRRWQDIKNPGCVNQDPIF--KNYSLPPHECGYPGS-VFNPLNFEPTL----EAK 194
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
KE+ NGRLAM+A L VQ +T GP +N+L+HLSDPWH TIIQTL+
Sbjct: 195 EKELANGRLAMLAFLAFMVQHGITGKGPFENLLQHLSDPWHNTIIQTLS 243
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 139/208 (66%), Gaps = 7/208 (3%)
Query: 43 TRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
+ R VRAQ RP W PG PP +LDG+LAGD+GFDPL LG++P++L+WYVQAELV
Sbjct: 15 SARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELV 74
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAET 158
H RFAM G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AET
Sbjct: 75 HGRFAMLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAET 133
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIK 217
KR+ D+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+K
Sbjct: 134 KRWYDFKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVK 192
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNIL 245
NGRLAM+A LG Q + T GP+DN++
Sbjct: 193 NGRLAMIACLGFAAQYAATGKGPLDNLV 220
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 143/207 (69%), Gaps = 8/207 (3%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 54 KKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 114 PEVFTKLGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 172
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F + +L E GYPGG + NPL A + E K KEI NGRLAM+A LG VQ +
Sbjct: 173 IF--KQYSLPKGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFVVQHN 225
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLA 261
VT GP +N+L+HLSDPWH TI+QTL+
Sbjct: 226 VTGKGPFENLLQHLSDPWHNTIVQTLS 252
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 148/238 (62%), Gaps = 18/238 (7%)
Query: 33 SAFLPAKSGTTRRYL----------ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R + A+ ++ WLPG+ P YL+GTL GD GFDPL
Sbjct: 20 SRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL EDPE+LRWYVQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 GLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKSEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPG + NPL A
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPQHECGYPGS-VFNPLNFA 195
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ E K KE+ NGRLAM+A LG VQ +VT GP +N+L+HLSDPWH TII T+
Sbjct: 196 PTL----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTI 249
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 133/205 (64%), Gaps = 5/205 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG P +LDG+L GDFGFDPLGLG DPE L+W+VQAELVH R+AM G AGI
Sbjct: 1 DRPLWFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFI 60
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P W AG ++ FA TLF+++L+L +AE +R+ D ++PG +
Sbjct: 61 PEALTKAGILNTPSWNVAGDQQY-FADPTTLFVIELILFAWAEGRRWADIVNPGCVNVDP 119
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLA--KDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
F L G + GYPGG +PLG KD + +E + KEIKNGRLAM+A+LG VQ
Sbjct: 120 VF--PNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLAVLGAVVQ 177
Query: 233 ASVTHVGPIDNILEHLSDPWHKTII 257
A+ TH GPIDN+L HL+DP H TI
Sbjct: 178 ANYTHTGPIDNLLAHLADPGHNTIF 202
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 145/220 (65%), Gaps = 12/220 (5%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+TRR +A Q + +WLPG+ P YLDG+LAGD GFDPL L EDPE LRW+VQAELV+
Sbjct: 19 STRRDVAV----QAKGSWLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVN 74
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
R+AM GVAG+L ++L G+ P WY+AG E FAS+ TLF+++ +L + E +R+
Sbjct: 75 GRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGK-ETYFASSSTLFVIEFILFHYVEIRRW 133
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
D +PGS ++ F +L E GYPG + NPL A + N K KE+ NGRL
Sbjct: 134 QDIKNPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELANGRL 186
Query: 222 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
AM+A LG VQ +VT GP +N+ +HL+DPWH TIIQT++
Sbjct: 187 AMLAFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 226
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLG 83
S FL R L+ A P+ WLPG+ P YL+G+L GD GFDPLG
Sbjct: 20 SRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPSPSYLNGSLPGDNGFDPLG 79
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSS 138
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
TLF+++ +L + E +R+ D +PG ++ F + +L E GYPGG + NPL A
Sbjct: 139 TLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAP 195
Query: 204 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
I E K KE+ NGRLAM+A LG +Q +VT GP +N+L+H+SDPWH TI+QT +
Sbjct: 196 TI----EAKEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHISDPWHNTIVQTFS 249
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 132/205 (64%), Gaps = 5/205 (2%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W+VQAELVH R+AM G AGI
Sbjct: 63 NDRPLWFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIF 122
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
+ L GI P W AG ++ F TLF+++++L +AE +R+ D I+PG +
Sbjct: 123 IPEALTKAGILNTPSWTVAGDQQY-FTDATTLFVIEIILFAWAEGRRWADIINPGCVNVD 181
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAK--DIRNAREWKLKEIKNGRLAMVAMLGIFV 231
F L G + GYPGG +PLG + D ++ + +EIKNGRLAM+A+LG V
Sbjct: 182 PVF--PNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAVLGAVV 239
Query: 232 QASVTHVGPIDNILEHLSDPWHKTI 256
QA+ TH GPIDN+L HL+DP H TI
Sbjct: 240 QANYTHTGPIDNLLAHLADPGHNTI 264
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 142/208 (68%), Gaps = 8/208 (3%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL+G+LAGD GFDPLGL EDP +L WYVQAEL + R+AM GVAG+L
Sbjct: 50 KKGEWLPGLPSPAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLV 109
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G+ P+WY+AG VE+ FA TLF+++ +L + E +R+ D PGS +++
Sbjct: 110 PEVLTKIGLINAPLWYDAGKVEY-FAPASTLFVIEFILFHYVEIRRWQDIKYPGSVSQDP 168
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F + L + GYPGG + NPL + +E+K KEI NGRLAM+A LG+ VQ+
Sbjct: 169 FFKSYK--LPPGDVGYPGG-IFNPLKFPAN----QEYKEKEIANGRLAMLAFLGMLVQSK 221
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+T GP +N+L HL+DPWH TI+QTLAN
Sbjct: 222 LTGAGPFENLLTHLADPWHTTIVQTLAN 249
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 147/225 (65%), Gaps = 8/225 (3%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+++ + R + + ++ WLPG+ P YL+G+L GD GFDPLGL EDPE+L+W+VQA
Sbjct: 34 SRNPSASRAVPAFRVSAKKGEWLPGLASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQA 93
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
EL + R+AM GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E
Sbjct: 94 ELQNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKQEY-FASSSTLFVIEFILFHYVE 152
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
+R+ D +PGS ++ F L E GYPGG + NPL A + E K KEI
Sbjct: 153 IRRWQDIKNPGSVNQDPIFKSYR--LPPNEVGYPGG-IFNPLNFAPSL----EAKEKEIA 205
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
NGRLAM+A LG +Q ++T GP DN+L+HLSDPWH TIIQTL++
Sbjct: 206 NGRLAMLAFLGFLIQHNLTGKGPFDNLLQHLSDPWHNTIIQTLSS 250
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 138/225 (61%), Gaps = 5/225 (2%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A+S + R A A RP W PG PPP+LDG+L GDFGFDPLGLG DPESLRW VQA
Sbjct: 41 AESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQA 100
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
+LVH R+AM G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE
Sbjct: 101 DLVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEHQY-FTDTTTLFIIELILIGWAE 159
Query: 158 TKRYMD-YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKE 215
+R+ D I+PG + F + + G G P G L+PLG +E + KE
Sbjct: 160 GRRWADIIINPGCVNTDPIF--PQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKE 217
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
IKNGR+AM+A++G + QA T GPIDN H++DP H TI Q
Sbjct: 218 IKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADPGHATIFQAF 262
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 141/213 (66%), Gaps = 8/213 (3%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A + + + WLPG+ P YL+G+L GD G DPLGL EDPESL+WYVQAELV+ R+AM
Sbjct: 44 ARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAML 103
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
GVAG+ ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D P
Sbjct: 104 GVAGMXIPEVLTSIGLINVPKWYDAGKVEY-FASSXTLFVIEFILFHYVELRRWQDIKYP 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
GS ++ +L E GYPGG + NPL + + E K KE+ NGRLAM+A L
Sbjct: 163 GSVNQDP--IXKSYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLAFL 215
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 216 GFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 144/249 (57%), Gaps = 15/249 (6%)
Query: 25 NKSSIGITSA-FLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTL 73
N S +G T A FL K +++A V RP W PG PP +LDG+L
Sbjct: 23 NGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSL 82
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GDFGFDPLGLG DPESL+W QAELVH+R+AM G AGI + L G+ P WY AG
Sbjct: 83 PGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAG 142
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E+ F T TLF+++L+L+G+AE +R+ D I PG + F L G + GYPGG
Sbjct: 143 EQEY-FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGG 199
Query: 194 PLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+PLG +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 200 LWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 259
Query: 253 HKTIIQTLA 261
H TI +
Sbjct: 260 HATIFAAFS 268
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 146/225 (64%), Gaps = 13/225 (5%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP+ S T ++ ++ WLPG+ P YL+G+L GD GFDPL L EDPE+L+W+V
Sbjct: 38 LPSTSSTN-----SLKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFV 92
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
QAELV+ R+AM GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L +
Sbjct: 93 QAELVNGRWAMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEY-FASSSTLFVIEFILFHY 151
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E +R+ D +PGS ++ F + +L E GYPGG + NPL A E K KE
Sbjct: 152 VEIRRWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TAEAKEKE 204
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TIIQT
Sbjct: 205 LANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 249
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 141/206 (68%), Gaps = 8/206 (3%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YL G+LAGD GFDPLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 53 KKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLL 112
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D +PGS ++
Sbjct: 113 PEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 171
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F + +L E GYPGG + NPL A +E K KE+ NGRLAM+A LG VQ +
Sbjct: 172 IF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHN 224
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTL 260
VT GP +N+L+HLSDPWH TI+QT
Sbjct: 225 VTGKGPFENLLQHLSDPWHNTIVQTF 250
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 159 KRYMDYISPGSQTKEGSFFGLEAA----LEGL-EPGYPGGPL-----LNPLGLAKDIRNA 208
R + + S GS K SF +EA L GL P Y G L +PLGLA+D N
Sbjct: 31 NRDLSFTSIGSSAKTSSF-KVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL 89
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
+ + E+ NGR AM+ + G+ + T +G I+
Sbjct: 90 KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 152/239 (63%), Gaps = 18/239 (7%)
Query: 33 SAFLPAKSGTTRRYLA---------TVVRAQ-QRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R +A T + + ++ WLPG+ P YL+G+L GD GFDPL
Sbjct: 20 SRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGLASPNYLNGSLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
L EDPE+L+W+VQAELV+ R+A GVAG+L ++L G+ +P WY+AG E+ FAS+
Sbjct: 80 ALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLINVPKWYDAGKAEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL A
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFA 195
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
E K +E+ NGRLAM+A LG VQ +VT GP DN+L+HLSDPWH TI+QTL+
Sbjct: 196 P----TEEAKERELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLS 250
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 138/208 (66%), Gaps = 8/208 (3%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
++ WLPG+ P YLDG+L GD GF PLGL EDPE+L+W+VQAELV+ R+AM GVAG+L
Sbjct: 1 KKGQWLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLL 60
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS +
Sbjct: 61 PEVFTNIGILNVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQXP 119
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F +L E GYPGG + NPL A E K KEI NGRLAM+A LG VQ +
Sbjct: 120 IF--KNYSLPPNEVGYPGG-IFNPLNFAP----TAEAKEKEIANGRLAMLAFLGFIVQHN 172
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLAN 262
V GP DN+L+HLSDPWH TI+QTL N
Sbjct: 173 VVGKGPFDNLLQHLSDPWHNTIVQTLGN 200
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 148/245 (60%), Gaps = 16/245 (6%)
Query: 25 NKSSIGITSAFLPAK--------SGTTRRYLATV--VRAQQRPTWLPGVDPPPYLDGTLA 74
N S G + AFL K S + R +TV V RP W PG PPP+LDG+L
Sbjct: 23 NGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGLG DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G + GYPGG
Sbjct: 143 QEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGL 199
Query: 195 LLNPLGL-AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL-EHLSDPW 252
+PLG + + +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP- 258
Query: 253 HKTII 257
H TI
Sbjct: 259 HATIF 263
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 147/238 (61%), Gaps = 18/238 (7%)
Query: 33 SAFLPAKSGTTRRYL----------ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL SG R + A+ ++ WLPG+ P YL+GTL GD GFDPL
Sbjct: 20 SRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPL 79
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL EDPE+LRWYVQAELV+ R+AM GVAG+L ++ GI P WY+AG E+ FAS+
Sbjct: 80 GLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEY-FASS 138
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG + NPL A
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPHECGYPGS-VFNPLNFA 195
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ E K KE+ NGRLAM+A LG VQ +VT GP +N+L+HLSDPWH TII T+
Sbjct: 196 PTL----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTI 249
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 138/211 (65%), Gaps = 8/211 (3%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
V Q + WLPG+ P YLDG+LAGD GFDPL L EDP LRW+VQAELV+ R+AM GVA
Sbjct: 43 VAVQAKGQWLPGLASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVA 102
Query: 111 GILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+L +LL G+ P WY+AG E FAS+ TLF+V+ +L + E +R+ D +PGS
Sbjct: 103 GMLIPELLTKAGLLSAPEWYDAGK-ETYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSV 161
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
++ F +L + GYPG + NPL A + N K KE+ NGRLAM+A LG
Sbjct: 162 NQDPIF--KSYSLPDHDCGYPGS-VFNPLNFAPTLEN----KEKELANGRLAMLAFLGFL 214
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
VQ +VT GP +N+++HL+DPWH TIIQT +
Sbjct: 215 VQHNVTGKGPFENLMQHLADPWHNTIIQTFS 245
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 128/204 (62%), Gaps = 4/204 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDPLGL DPESLRW QAELVH R+AM G AGI
Sbjct: 65 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 124
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P WY AG +E+ F T TLFIV+L+ +G+AE +R+ D + PG +
Sbjct: 125 PEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDP 183
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G + Q
Sbjct: 184 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 241
Query: 234 SVTHVGPIDNILEHLSDPWHKTII 257
T GPIDN+ HL+DP H T+
Sbjct: 242 IYTGTGPIDNLFAHLADPGHATVF 265
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 152/247 (61%), Gaps = 20/247 (8%)
Query: 26 KSSIGIT--SAFLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTL 73
++SIG++ S FL S +R V ++ W PG+ P YL+G+L
Sbjct: 7 QASIGVSCPSTFLSGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYLNGSL 66
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GD GFDPLGL DP +L+WYVQAEL + R+AM GVAG+L ++L G+ P+WY+AG
Sbjct: 67 PGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLWYDAG 126
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
VE+ FA TLF+++ L+ + E +R+ D PGS ++ F G +L E GYPGG
Sbjct: 127 KVEY-FAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGY--SLPPNEVGYPGG 183
Query: 194 PLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
+ NPL + E+K KE+ NGRLAM+A LG +Q++VTH GP +N+L HLSDPWH
Sbjct: 184 -IFNPLNFPAN----EEYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDPWH 238
Query: 254 KTIIQTL 260
TI+Q++
Sbjct: 239 HTIVQSI 245
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 151/245 (61%), Gaps = 19/245 (7%)
Query: 29 IGITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD G
Sbjct: 16 CGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNG 75
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+
Sbjct: 76 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY- 134
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
FAS+ TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NP
Sbjct: 135 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNP 191
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
L A + E K KEI NGRL M+A LG +Q +VT GP DN+L+H+SDPWH TI+Q
Sbjct: 192 LNFAPTL----EAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 246
Query: 259 TLANS 263
TL +
Sbjct: 247 TLGGN 251
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 152/247 (61%), Gaps = 20/247 (8%)
Query: 26 KSSIGIT--SAFLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTL 73
++SIG++ S FL S +R V ++ W PG+ P YL+G+L
Sbjct: 7 QASIGVSCPSTFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYLNGSL 66
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
GD GFDPLGL DP +L+WYVQAEL + R+AM GVAG+L ++L G+ P+WY+AG
Sbjct: 67 PGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLWYDAG 126
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
VE+ FA TLF+++ L+ + E +R+ D PGS ++ F G +L E GYPGG
Sbjct: 127 KVEY-FAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGY--SLPPNEVGYPGG 183
Query: 194 PLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
+ NPL + E+K KE+ NGRLAM+A LG +Q++VTH GP +N+L HLSDPWH
Sbjct: 184 -IFNPLNFPAN----EEYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDPWH 238
Query: 254 KTIIQTL 260
TI+Q++
Sbjct: 239 HTIVQSI 245
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 129/204 (63%), Gaps = 4/204 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+RP W PG PP +LDG+L GDFGFDPLGL DPESL+W VQAE+VH R+AM G AGI
Sbjct: 50 ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFI 109
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS +
Sbjct: 110 PEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 168
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G + Q
Sbjct: 169 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH 226
Query: 234 SVTHVGPIDNILEHLSDPWHKTII 257
T GPIDN+ HL+DP H TI
Sbjct: 227 IYTGTGPIDNLFAHLADPGHATIF 250
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 129/209 (61%), Gaps = 4/209 (1%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAELVH R+AM G
Sbjct: 46 VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGA 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS
Sbjct: 106 AGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGS 164
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLG 228
+ F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G
Sbjct: 165 VNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMG 222
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTII 257
+ Q T GPIDN+ HL+DP H TI
Sbjct: 223 AWFQHIYTGTGPIDNLFAHLADPGHATIF 251
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 133/215 (61%), Gaps = 8/215 (3%)
Query: 48 ATVVRA----QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
A +VRA +RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W QAELVH R
Sbjct: 39 AALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCR 98
Query: 104 FAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 163
+AM G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D
Sbjct: 99 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWAD 157
Query: 164 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLA 222
I PGS + F L G + GYPGG +PLG +E + KEIKNGRLA
Sbjct: 158 IIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 215
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
M+A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 216 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 250
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
+ T A +RP W PG PP +LDG+L DFGFDPLGLG +PE L+W+VQ+E+VH+R+A
Sbjct: 53 FSVTAAAATERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWA 112
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L GI P WY AG E+ F TLFIV+++L+G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEALTKLGILNTPFWYTAGEQEY-FTDQTTLFIVEMILLGWAEGRRWADIL 171
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 224
PGS + F L G + GYPGG +P G +E + KEIKNGRLAM+
Sbjct: 172 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAML 229
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
A++G + QA T PIDN+L HL+DP H TI +
Sbjct: 230 AVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAFTS 267
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
+ T A +RP W PG PP +LDG+L DFGFDPLGLG +PE L+W+VQ+E+VH+R+A
Sbjct: 53 FSVTAAAATERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWA 112
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L GI P WY AG E+ F TLFIV+++L+G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEALTKLGILNTPFWYTAGEQEY-FTDQTTLFIVEMILLGWAEGRRWADIL 171
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 224
PGS + F L G + GYPGG +P G +E + KEIKNGRLAM+
Sbjct: 172 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAML 229
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
A++G + QA T PIDN+L HL+DP H TI +
Sbjct: 230 AVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAFTS 267
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 143/234 (61%), Gaps = 11/234 (4%)
Query: 33 SAFLPAKSGTTR-RYLATVVRAQ--------QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
+A L KS T R R +A+ RA RPTWLPG P +LDGTL D+GFDPL
Sbjct: 10 AAGLTQKSRTVRPRGVASKARASVRVGAVAAARPTWLPGSPAPAHLDGTLPCDYGFDPLN 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
LG DPE+L+W+VQAEL+H R+AM G+AG++ +LL G+ +LP W +AG + +
Sbjct: 70 LGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGKWDGYWLGAG 129
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
LF VQ+ +M +AE +R+ D +PG+ E G + GYP G L +P+G AK
Sbjct: 130 PLFFVQMAMMNWAEVRRWQDMKAPGTMN-EDPLTGANKGDTNTDVGYPKG-LFDPMGYAK 187
Query: 204 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
D + A E K KEI NGRLAMVA++G F QA T GP+DN+ HL+DP H I
Sbjct: 188 DPKKAEELKRKEIANGRLAMVAIVGCFAQAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 129/209 (61%), Gaps = 4/209 (1%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAE+VH R+AM G
Sbjct: 46 VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGA 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS
Sbjct: 106 AGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGS 164
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLG 228
+ F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G
Sbjct: 165 VNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMG 222
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTII 257
+ Q T GPIDN+ HL+DP H TI
Sbjct: 223 AWFQHIYTGTGPIDNLFAHLADPGHATIF 251
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 129/209 (61%), Gaps = 4/209 (1%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAE+VH R+AM G
Sbjct: 46 VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGA 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS
Sbjct: 106 AGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGS 164
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLG 228
+ F L G + GYPGG +PLG +E + KEIKNGRLAM+A++G
Sbjct: 165 VNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMG 222
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTII 257
+ Q T GPIDN+ HL+DP H TI
Sbjct: 223 AWFQHIYTGTGPIDNLFAHLADPGHATIF 251
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 134/220 (60%), Gaps = 6/220 (2%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARF 104
R A VV A RP W PGV PP +LDGTL GDFGFDPL LG + E+L WY AEL + R+
Sbjct: 22 RRSAVVVYAASRPLWQPGVTPPAHLDGTLPGDFGFDPLNLGVNKEALDWYRNAELQNGRW 81
Query: 105 AMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST---RTLFIVQLLLMGFAETKRY 161
AM GVAGI+F L G+ +P W +AG V + + +L +VQ L F E KR+
Sbjct: 82 AMLGVAGIIFPAELTRVGLLNVPDWADAGKVYAESENAIPFASLLMVQFFLFNFVEIKRW 141
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLE-PGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNG 219
D PGSQ + GSF G E+A +G GYPGGP NPLGL + + ++K +EI+NG
Sbjct: 142 EDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGP-FNPLGLGNSSKESMDDFKWREIRNG 200
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
RLAM+A LG Q + T GP+DN+ +HL+DPW
Sbjct: 201 RLAMMAFLGFLAQHAATGKGPLDNLADHLADPWANNFCSN 240
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 132/211 (62%), Gaps = 11/211 (5%)
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGL------GEDPESLRWYVQAELVHARFAMA 107
+RP W PG P +LDG+L GDFGFDPLGL G DPE+L+W+VQAELVH R+AM
Sbjct: 62 NERPLWFPGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAML 121
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
G AGI + L GI P W AG ++ F TLF+++L+L +AE +R+ D ++P
Sbjct: 122 GAAGIFIPEALTKMGILNTPSWTVAGDADY-FTDKTTLFVIELILFAWAEGRRWADIVNP 180
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK--DIRNAREWKLKEIKNGRLAMVA 225
G + F L G + GYPGG +PLG + D ++ + +EIKNGRLAM+A
Sbjct: 181 GCVNVDPVF--PNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAMLA 238
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
+LG VQA+ TH GPIDN++ HL DP H TI
Sbjct: 239 VLGAIVQANYTHTGPIDNLVAHLVDPGHNTI 269
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 128/204 (62%), Gaps = 4/204 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
+RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W VQAE+VH R+AM G AGI
Sbjct: 50 ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFI 109
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I PGS +
Sbjct: 110 PEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 168
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
F L G + GYPGG +PLG +E + KEIKNGRL M+A++G + Q
Sbjct: 169 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLTMLAVMGAWFQH 226
Query: 234 SVTHVGPIDNILEHLSDPWHKTII 257
T GPIDN+ HL+DP H TI
Sbjct: 227 IYTGTGPIDNLFAHLADPGHATIF 250
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 133/211 (63%), Gaps = 3/211 (1%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
V A RP + PG PP +LDGT+AGD+GFDPLGLGED +L+WY QAELVHAR+AM GVA
Sbjct: 37 VSAAARPNFFPGSTPPKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVA 96
Query: 111 GILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
G+ +L+ + LP W EA + A TLF+VQ+ M +AE +R+ D +PGS
Sbjct: 97 GMAAPELVGNPFVDGPLPNWAEAPFFDGYIADANTLFVVQMFFMNWAEVRRWQDMKNPGS 156
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
+ + G + GYPGG L NP+G+AK + + + + KEI NGRLAMVA +G
Sbjct: 157 VHADP--YDENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVAAMGC 214
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
F+Q VT GP+ N+ H++DP H TI Q
Sbjct: 215 FIQHDVTGTGPVANLKAHIADPVHVTIFQNF 245
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 154/264 (58%), Gaps = 20/264 (7%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ R P+W+
Sbjct: 3 FVLAKSSAFGVAAKPVSRRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWM 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG D P YL+GTL GDFGFDPL LG+DP L+WY QAEL++ARFAM VAGIL +LL
Sbjct: 63 PGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG E+ FA +LF VQ+LL + E +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 235
F +G EPGYPGG + +P G +K DI++ KLKEIKNGRLAM+A G QA
Sbjct: 180 FTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGRLAMLAFAGFIGQAYT 235
Query: 236 THVGPIDNILEHLSDPWHKTIIQT 259
T P+ N+ HL+DPW T+ Q
Sbjct: 236 TGTTPLKNLSTHLADPWSTTVWQN 259
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 154/264 (58%), Gaps = 20/264 (7%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ R P+W+
Sbjct: 3 FVLAKSSAFGVAAKPVSRRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWM 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG D P YL+GTL GDFGFDPL LG+DP L+WY QAEL++ARFAM VAGIL +LL
Sbjct: 63 PGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG E+ FA +LF VQ+LL + E +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 235
F +G EPGYPGG + +P G +K DI++ KLKEIKNGRLAM+A G QA
Sbjct: 180 FTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGRLAMLAFAGFIGQAYT 235
Query: 236 THVGPIDNILEHLSDPWHKTIIQT 259
T P+ N+ HL+DPW T+ Q
Sbjct: 236 TGTTPLKNLSTHLADPWSTTVWQN 259
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 138/213 (64%), Gaps = 4/213 (1%)
Query: 40 SGTTRRYLATVV-RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
S T R ++V+ A+ RP W+PG P +L G L GD+GFDPL LGED + L WYVQAE
Sbjct: 19 SATKRTVRSSVIASAESRPLWMPGTAAPSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAE 78
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
L HAR+AM GVAG+ +LL + G+ +LP W++A FAS+ TLF VQ+ +M +AE
Sbjct: 79 LQHARWAMLGVAGMAAPELLTMFGVSDLPNWHDAPFYNGYFASSTTLFTVQMFMMNWAEI 138
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D +PGS +++ +F G + L + GYPGG + NP+ K + K KEI N
Sbjct: 139 RRWQDIKNPGSVSEDPAFPGNK--LPAGDVGYPGG-IFNPMNYGKSTDELKALKAKEIAN 195
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GRLAMVA LG F+Q T VGP++N+ HLS+P
Sbjct: 196 GRLAMVAALGCFIQYDHTGVGPVENLTSHLSNP 228
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 150/263 (57%), Gaps = 18/263 (6%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ R P+W+
Sbjct: 3 FVLSKSSAFGVAAKPVSRRSSVAVKASAVPENVKEARAWIDAWKSKQGGAKRDPSLPSWM 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
PG P YLDGTL GDFGFDPL LG +P L+WY QAELVHARFAM VAGIL +LL
Sbjct: 63 PGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG ++ FA +LF VQ+LL +AE +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFQY-FAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
F +G EPGYPGG + +P G +K + + K KEIKNGRLAM+A G QA T
Sbjct: 180 FSNNKLPDGNEPGYPGG-IFDPFGWSKG--DMKSLKTKEIKNGRLAMLAFAGFAAQAYTT 236
Query: 237 HVGPIDNILEHLSDPWHKTIIQT 259
P+ N+ HL+DPW T+ Q
Sbjct: 237 GTTPLKNLATHLADPWATTVWQN 259
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 137/224 (61%), Gaps = 5/224 (2%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
L A T R + VRA +P W PG+D P +L G L GD+GFDPL LG++P+ L WYV
Sbjct: 13 LRAPKTTKRSQRSVSVRASTQPMWFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYV 72
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
QAEL H R+AM GVAG ++L GI +LP W++A + F TLF VQ+L+M +
Sbjct: 73 QAELQHGRWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDATTLFWVQMLMMNW 132
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE +R+ D PGS ++ +F G + L GYPGG + +PLG AK N + K KE
Sbjct: 133 AEVRRWQDMRKPGSVNEDPAFSGNK--LPSGIVGYPGG-IFDPLGYAKGDLN--KLKAKE 187
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
I NGRLAMVA GI VQ T VGP+ N++ H+SDP H + Q
Sbjct: 188 IANGRLAMVAFAGIMVQYDHTGVGPVANLVAHMSDPAHNNVFQA 231
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/270 (42%), Positives = 144/270 (53%), Gaps = 40/270 (14%)
Query: 25 NKSSIGITSAFLPAKSGTTR--------RYLATVVRAQQ--RPTWLPGVDPPPYLDGTLA 74
N S +G + AFL K R TV A + RP W PG PPP+LDG+L
Sbjct: 22 NGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLP 81
Query: 75 GDFGFDPLGL--------------------------GEDPESLRWYVQAELVHARFAMAG 108
GDFGFDPLGL DPESL+W VQAELVH R+AM G
Sbjct: 82 GDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVHCRWAMLG 141
Query: 109 VAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D ++PG
Sbjct: 142 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELIFIGWAEGRRWADILNPG 200
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAML 227
+ F L G + GYPGG +PLG + +E + KEIKNGRLAM+A++
Sbjct: 201 CVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVM 258
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTII 257
G + Q T GPIDN+ HL+DP H TI
Sbjct: 259 GAWFQHIYTGTGPIDNLFAHLADPGHATIF 288
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 128/201 (63%), Gaps = 4/201 (1%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG PP +LDG+L D+GFDPL LG DP+ L W QAEL+H R+AM GVAGIL LL
Sbjct: 2 WFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALL 61
Query: 119 RVTGIRELPVWYEAGAVEFKFAST--RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G +PVW+EAG V +S L +V+ L MGF ETKR+ D SPGSQ +GS
Sbjct: 62 TKLGAMNVPVWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYDIKSPGSQ-GDGSI 120
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMVAMLGIFVQASV 235
FG+ +G GYPGG +P G +K + + ++KEI NGRLAMVAM+G + Q +
Sbjct: 121 FGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWAQYAA 180
Query: 236 THVGPIDNILEHLSDPWHKTI 256
T GP+DN+ +H++DP H T
Sbjct: 181 TGKGPVDNLFDHIADPGHVTF 201
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 133/212 (62%), Gaps = 10/212 (4%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDPLGLG +PE+LRW+ QAEL+H+R+AM VAGIL
Sbjct: 66 DRPVWFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAVAGILI 125
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L+ G E WY AG E+ FA TLFI Q+ LMG+AE +R+MDY++PGS E
Sbjct: 126 PEILQKWGFMEEFSWYTAGEREY-FADPWTLFIAQMALMGWAEGRRWMDYLNPGSVDIEP 184
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRLAMVAMLGIF 230
F + + GYPGG + R + E + KEIKNGRLAM+A +G +
Sbjct: 185 RFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFW 239
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
QA T GP+DN+L HL+DP H I +
Sbjct: 240 FQAVYTGQGPVDNLLAHLADPGHCNIFSAFTS 271
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 136/219 (62%), Gaps = 9/219 (4%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+ R VVRA+ R +WLPG + P YL G L GDFGFDPL LGEDP +L+WY QAEL +
Sbjct: 25 SAARSARVVVRAE-RASWLPGSEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQN 83
Query: 102 ARFAMAGVAGILFTDL---LRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
R+AM AGILF DL L G W++A + FA T TLFIV+LLL + E
Sbjct: 84 GRWAMLAAAGILFVDLLGHLGAGGPAAATPWFKASDFTY-FAPTSTLFIVELLLFAWVEV 142
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+RY D + PGS T + F + G EPGYPGG + +PLG +K N E KLKEIKN
Sbjct: 143 RRYQDMVKPGS-TNQDPIFSQYSLPSGNEPGYPGG-IFDPLGYSKG--NMAELKLKEIKN 198
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
RLAM+A+LG FVQA T P+D++ HL+DPW +
Sbjct: 199 ARLAMLAVLGFFVQAKTTGKTPLDSLSSHLADPWSNNVF 237
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 130/217 (59%), Gaps = 3/217 (1%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARF 104
R V A RP + PG PP +LDGT+ GD+GFDPLGLGED +L WY QAEL+HAR+
Sbjct: 30 RSSVRTVAAAVRPNYFPGSTPPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARW 89
Query: 105 AMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 163
AM GVAG+ ++ + LP W +A + A TLF+VQ+ LM +AE +R+ D
Sbjct: 90 AMLGVAGMAAPEIFGNPLVDGPLPNWADAPFYDGYIADANTLFVVQMFLMNWAEVRRWQD 149
Query: 164 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAM 223
+PGS + + G + GYPGG L NP+G+AK + + KEI NGRLAM
Sbjct: 150 MKNPGSVHADP--YDESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAM 207
Query: 224 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
VA +G F+Q VT GP+ N+ HL+DP H TI Q
Sbjct: 208 VAAMGCFIQHDVTGTGPVANLKAHLADPAHATIFQNF 244
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLPG P YL+ L G +GFDPL LGEDP SL+WYVQ+ELVH+RFAMA VAGIL ++
Sbjct: 37 NWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEV 95
Query: 118 LRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
L+ G LPVWYEAG A E TL +++ F E KR+ D+ PGSQ +EGS
Sbjct: 96 LKAFGAVNLPVWYEAGKYAQESSPIPFNTLIALEIFAFNFVEIKRWQDFKKPGSQGEEGS 155
Query: 176 FFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F GLE +G E GYPGG + +PLGL+K KL+EIKNGRLAM+A +G Q
Sbjct: 156 FVGLEGFFKGTGENGYPGG-VFDPLGLSKG-PGYEAMKLREIKNGRLAMLAFIGFASQYL 213
Query: 235 VTHVGPIDNILEHLSDP 251
T GPI+N+L+HLS+P
Sbjct: 214 ATGKGPIENLLDHLSNP 230
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 137/230 (59%), Gaps = 12/230 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ L+TV RP W PG PPP+LDG+L GDFGFDPLG G +PESLRW+ Q
Sbjct: 49 RTGATKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQ 108
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H R+AM VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+
Sbjct: 109 AELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWV 167
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+MDY++PGS E F + + GYPGG + R + E +
Sbjct: 168 EGRRWMDYLNPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 222
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
KEIKNGRLAM+A +G + Q T GP+DN+ HL+DP H I +
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 272
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 137/230 (59%), Gaps = 12/230 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ L+TV RP W PG PPP+LDG+L GDFGFDPLG G +PESLRW+ Q
Sbjct: 46 RTGATKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQ 105
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H R+AM VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+
Sbjct: 106 AELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWV 164
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+MDY++PGS E F + + GYPGG + R + E +
Sbjct: 165 EGRRWMDYLNPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 219
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
KEIKNGRLAM+A +G + Q T GP+DN+ HL+DP H I +
Sbjct: 220 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 269
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 136/220 (61%), Gaps = 7/220 (3%)
Query: 36 LPAKSGTTRRYLATVV----RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
L A++ TTR +VV +RP W PG P P+LDG+L GDFGFDPL L DPE
Sbjct: 15 LKARATTTRASRRSVVVSAEAGAERPVWYPGKAPAPHLDGSLPGDFGFDPLSLSADPEMR 74
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLL 151
+W VQAEL HAR+AM GVAG + +LL G+ +LP W +AG ++ +A LF +Q+
Sbjct: 75 KWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGTYQY-WAPAGPLFFIQMA 133
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
+ +AE +R+ D +PGS + FG + + GYPGG L + LG AKD A+E
Sbjct: 134 MFNWAEVRRWQDMKNPGSMNTD-PLFGYNSNDTNTDVGYPGG-LFDKLGYAKDPAKAKEL 191
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KLKEIKNGRLAMVA LGI Q T GP++N+ H++ P
Sbjct: 192 KLKEIKNGRLAMVAFLGICAQYVQTGQGPVENLFSHIASP 231
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 142/235 (60%), Gaps = 18/235 (7%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ---------QRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL +K + R AT +AQ RP W PG P +LDG+L GDFG+DPL
Sbjct: 8 ASTFLGSKVASVAR--ATPAKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPL 65
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL DP+ L+W VQAEL +AR+AM GVAG+L DL G+ WYEA V+++ A
Sbjct: 66 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQ-ADW 124
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+TL +VQL+L + E +R+ D+ SPGS + FG + GYPGGP +PLG +
Sbjct: 125 KTLLVVQLVLHAWVEGRRWADFHSPGSANADP--FG-NSLPSTATTGYPGGP-FDPLGFS 180
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
K N E KLKEIKNGRLAMVA LG+FVQ S T P+DN+ HL+DP H I
Sbjct: 181 KG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDNLAAHLADPGHANIF 233
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 142/240 (59%), Gaps = 17/240 (7%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ----------QRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S FL +K R AT + Q RP W PG+ P YLDG+L GDFG+DP
Sbjct: 11 ASTFLGSKVAPVAR--ATAAKPQAKFAVFAAKADRPLWCPGIPAPSYLDGSLPGDFGYDP 68
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-A 140
L L P+ L+W VQAEL +AR+AM GVAG+L DLL+ +P WY+A + + A
Sbjct: 69 LSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLLQGILPDNVPQWYDAPLLADVYPA 128
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
++LFI+Q++LMGF E +R+ D +PGS + F + G PGYPGG + +PLG
Sbjct: 129 EWKSLFIIQMILMGFVEARRWADINTPGSANVDPVFNNNKLPDSG-TPGYPGG-MFDPLG 186
Query: 201 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+K N E K KE++NGRLAMVA LG+F+Q T P+ N+ +HL+DPWH + L
Sbjct: 187 FSKG--NLEESKWKELRNGRLAMVASLGMFIQYDATGKSPLTNLADHLADPWHNNVCALL 244
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 142/235 (60%), Gaps = 18/235 (7%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQ---------QRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S FL +K + R AT +AQ RP W PG P +LDG+L GDFG+DPL
Sbjct: 4 ASTFLGSKVASVAR--ATPAKAQAKFVVSASSNRPVWFPGNAPRAWLDGSLPGDFGYDPL 61
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST 142
GL DP+ L+W VQAEL +AR+AM GVAG+L DL G+ WYEA V+++ A
Sbjct: 62 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQ-ADW 120
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+TL +VQL+L + E +R+ D+ SPGS + FG + GYPGGP +PLG +
Sbjct: 121 KTLLVVQLVLHAWVEGRRWADFHSPGSANADP--FG-NSLPSTATTGYPGGP-FDPLGFS 176
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
K N E KLKEIKNGRLAMVA LG+FVQ S T P+DN+ HL+DP H I
Sbjct: 177 KG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDNLAAHLADPGHANIF 229
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 158/273 (57%), Gaps = 32/273 (11%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGV 63
SSSS + + S G S LP+ G++R+ + VV+A P W
Sbjct: 8 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAASSPPVKQNGANRQLWFASK 64
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDL 117
YLDG+L GDFGFDPLGL DPE RW E+++ RFAM G AG + ++
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 118 LRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
L G+ LP W++ G + +A TLF++++ MGFAE +R+ D+ +PG
Sbjct: 124 LGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPG 182
Query: 169 SQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
S K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNGRLAM+A+L
Sbjct: 183 SMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 241
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 242 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 157/271 (57%), Gaps = 30/271 (11%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ--------QRPTWLPGVDP 65
SSSS + + S G S LP+ G++R+ + VV+A R W
Sbjct: 290 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAAAPVKKGGANRQLWFASKQS 346
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GDFGFDPLGL DPE + W E+++ RFAM G AG + ++L
Sbjct: 347 LSYLDGSLPGDFGFDPLGL-SDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILG 405
Query: 120 VTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+ LP W++ G + +A TLF++++ MGFAE +R D+ +PGS
Sbjct: 406 KAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSM 464
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNGRLAM+A+LG
Sbjct: 465 GKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 523
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 524 FIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 158/273 (57%), Gaps = 32/273 (11%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGV 63
SSSS + + S G S LP+ G++R+ + VV+A P W
Sbjct: 8 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAASSPPVKQNGANRQLWFASK 64
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDL 117
YLDG+L GDFGFDPLGL DPE RW E+++ RFAM G AG + ++
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 118 LRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
L G+ LP W++ G + +A TLF++++ MGFAE +R+ D+ +PG
Sbjct: 124 LGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPG 182
Query: 169 SQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
S K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNGRLAM+A+L
Sbjct: 183 SMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 241
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 242 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 158/273 (57%), Gaps = 32/273 (11%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----------WLPGV 63
SSSS + + S G S LP+ G++R+ + VV+A P W
Sbjct: 8 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAASSPPVKQNGANRQLWFASK 64
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDL 117
YLDG+L GDFGFDPLGL DPE RW E+++ RFAM G AG + ++
Sbjct: 65 QSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEI 123
Query: 118 LRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
L G+ LP W++ G + +A TLF++++ MGFAE +R+ D+ +PG
Sbjct: 124 LGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPG 182
Query: 169 SQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
S K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNGRLAM+A+L
Sbjct: 183 SMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 241
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 242 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 157/271 (57%), Gaps = 30/271 (11%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ--------QRPTWLPGVDP 65
SSSS + + S G S LP+ G++R+ + VV+A R W
Sbjct: 306 SSSSLTFAAEAVRQSFGARS--LPSSIGSSRKG-SFVVKAAAPVKKGGANRQLWFASKQS 362
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GDFGFDPLGL DPE + W E+++ RFAM G AG + ++L
Sbjct: 363 LSYLDGSLPGDFGFDPLGL-SDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILG 421
Query: 120 VTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+ LP W++ G + +A TLF++++ MGFAE +R D+ +PGS
Sbjct: 422 KAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSM 480
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE+KNGRLAM+A+LG
Sbjct: 481 GKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 539
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 540 FIQALVTGVGPYQNLLDHLADPVNNNILTSL 570
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 140/234 (59%), Gaps = 12/234 (5%)
Query: 33 SAFLPAKSGTTR-RYLATVVRAQ--------QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
SA L +S T R R +A+ RA RP + PG PP +LDGT+ GD+GFDPLG
Sbjct: 10 SAGLTQRSRTVRPRSVASKARASVRVGAVAAARPNFFPGTTPPKHLDGTMPGDYGFDPLG 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFAST 142
LGED +L WY QAEL HAR+AM GV G+ +L++ + +P W EA + AS
Sbjct: 70 LGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEGAMPNWAEAPLWDGYMASP 129
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
TLF+VQ+ +M +AE +R+ D +PG+ E G + GYP G L +P+G+A
Sbjct: 130 NTLFVVQMFMMNWAEVRRWQDMKNPGTMN-EDPLTGANKGDTNTDVGYPKG-LFDPMGMA 187
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
KD + K+KEI NGRLAMVA++G +Q T VGPI N+ HL+DP H TI
Sbjct: 188 KDPEKVKVLKVKEIANGRLAMVAVMGCIIQNEATGVGPIANLKAHLADPAHNTI 241
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 136/230 (59%), Gaps = 12/230 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ L+TV RP W PG PPP+LDG+L GDFGFDPLG G +PESLRW+ Q
Sbjct: 49 RTGATKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQ 108
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H R+AM VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+
Sbjct: 109 AELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWV 167
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+MDY++PGS E F + + GYPGG + R + E +
Sbjct: 168 EGRRWMDYLNPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 222
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
KEIKNGRLAM+A +G + Q T GP+ N+ HL+DP H I +
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTS 272
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 147/263 (55%), Gaps = 18/263 (6%)
Query: 9 FLLQPSSSSSFICNDVNK-SSIGITSAFLPAKSGTTRRYL-------ATVVRAQQRPTWL 60
F+L SS+ V++ SS+ + ++ +P R ++ + R P
Sbjct: 3 FVLSKSSAFGVAAKPVSRRSSVAVKASAVPENVKEARAWIDAWKSKQGALSRTPAFPAGC 62
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P P YLDGTL GDFGFDPL LG +P L+WY QAELVHARFAM VAGIL +LL
Sbjct: 63 PAATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTN 122
Query: 121 TGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
G P WY+AG ++ FA +LF VQ+LL +AE +RY D++ PGS ++
Sbjct: 123 IGF-SWPGAGVAWYDAGKFQY-FAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQD-PI 179
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
F +G EPGYPGG + +P G +K + + K KEIKNGRLAM+A G QA T
Sbjct: 180 FSNNKLPDGNEPGYPGG-IFDPFGWSKG--DMKSLKTKEIKNGRLAMLAFAGFAAQAYTT 236
Query: 237 HVGPIDNILEHLSDPWHKTIIQT 259
P+ N+ HL+DPW T+ Q
Sbjct: 237 GTTPLKNLATHLADPWATTVWQN 259
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 137/221 (61%), Gaps = 9/221 (4%)
Query: 31 ITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES 90
+ ++ L ++S + + A+ V QR W PGVD P +LDG+L GDFGFDPLGL DPE
Sbjct: 9 VNTSALKSRSVSRQSARASFVVKAQRDVWWPGVDAPAHLDGSLPGDFGFDPLGLSVDPEM 68
Query: 91 LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQL 150
+W VQAEL HAR+AM GVAG++ DL + P W EAG E+ +A LF +Q+
Sbjct: 69 KKWMVQAELQHARWAMLGVAGMVGPDL----APWDTPSWIEAGKFEY-WAPAGPLFFIQM 123
Query: 151 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 210
+M +AE +R+ D PGS K+ FG A + GYPGG L + LG AK ++
Sbjct: 124 AMMNWAEVRRWQDMKDPGSMNKD-PLFGYNANDTNTDVGYPGG-LFDKLGYAK--KDLDT 179
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KLKEIKNGRLAMVA+ G FVQ + T V P+ N+ H+++P
Sbjct: 180 LKLKEIKNGRLAMVAIAGCFVQGATTGVSPLTNLTSHIANP 220
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 139/235 (59%), Gaps = 7/235 (2%)
Query: 32 TSAFLPAKSGTT-RRYLATVVRA--QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDP 88
T+ +LP + T ++ ++ V RP W PG PP +LDG+L GDFGFDP+GLG DP
Sbjct: 27 TATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDP 86
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIV 148
E L+W QAEL+HAR+AM GV+GIL +LL G E WYEAG E+ FA TLFIV
Sbjct: 87 ELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYVENYSWYEAGTQEY-FADPTTLFIV 145
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRN 207
QL LMG+ E +R+ D ++PGS E + GYPGG +P+ +
Sbjct: 146 QLALMGWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDV--GYPGGLWFDPMMWGRGSPEP 203
Query: 208 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ KEIKNGRLAM+A +G + QA T GPI+N++ HL+DP H I +
Sbjct: 204 VMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 137/230 (59%), Gaps = 12/230 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ ++ V RP W PG PPP+LDG+L GDFGFDPLGLG DPE LRW+ Q
Sbjct: 40 RAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQ 99
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM VAGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+A
Sbjct: 100 AELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWA 158
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+ DY++PG E + + GYPGG + R + E +
Sbjct: 159 EGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 213
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
KEIKNGRLAM+A +G + QA T GPIDN+L HL+DP H + +
Sbjct: 214 TKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 127/209 (60%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE LRW+ QAEL+H+R+AM VAGIL
Sbjct: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILI 112
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AGA EF FA TLF+VQL LMG+ E +R+ D I+PG +
Sbjct: 113 PECLERLGFIENFSWYDAGAQEF-FADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQL 171
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+F A + GYPGG +P + + KEIKNGRLAM+A +G QA
Sbjct: 172 TF--PNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 229
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
T GPI+N++ H++DP H + +
Sbjct: 230 IYTGEGPIENLMAHIADPGHCNVFSAFTS 258
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 150/269 (55%), Gaps = 25/269 (9%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEATRQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FV
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA VT VGP N+L+HL+DP H I+ +L
Sbjct: 245 QALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 146/249 (58%), Gaps = 29/249 (11%)
Query: 37 PAKSGTTRRYLATVVRAQ---------QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
PA S T+RR + VV+A RP W YLDG+L GD+GFDPLGL D
Sbjct: 26 PAVS-TSRRKSSFVVKATSTPPVKQGANRPLWFASSQSLTYLDGSLPGDYGFDPLGL-SD 83
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE- 136
PE RW E+++ RFAM G AG + ++L G+ LP W++ G +
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPP 142
Query: 137 ----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYP 191
+A TLF++++ LMGFAE +R D+ +PGS K+ F GLE G EP YP
Sbjct: 143 AGTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGFSGSGEPAYP 201
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GGP NPLG K+ ++ +E KLKEIKNGRLAM+A+LG FVQ VT VGP N+L+HL+DP
Sbjct: 202 GGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 261
Query: 252 WHKTIIQTL 260
+ ++ +L
Sbjct: 262 VNNNVLTSL 270
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 127/210 (60%), Gaps = 4/210 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE LRW+ QAEL+H+R+AM VAGIL
Sbjct: 23 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILI 82
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AGA EF FA TLF+VQL LMG+ E +R+ D I+PG +
Sbjct: 83 PECLERLGFIENFSWYDAGAQEF-FADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQL 141
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+F A + GYPGG +P + + KEIKNGRLAM+A +G QA
Sbjct: 142 TF--PNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 199
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
T GPI+N++ H++DP H + +
Sbjct: 200 IYTGEGPIENLMAHIADPGHCNVFSAFTSQ 229
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 150/269 (55%), Gaps = 25/269 (9%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FV
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA VT VGP N+L+HL+DP H I+ +L
Sbjct: 245 QALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 138/231 (59%), Gaps = 13/231 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++ T+ ++TV RP W PG PPP+LDG+L GDFGFDPLGLG +PE LRW+ Q
Sbjct: 46 RANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQ 105
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGF 155
AEL+H R+AM AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+
Sbjct: 106 AELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGW 164
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----W 211
AE +R+ DY+ PG E F + + + GYPGG + A R + E
Sbjct: 165 AEGRRWADYLRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVL 219
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ KEIKNGRLAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 220 RTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 270
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 150/269 (55%), Gaps = 25/269 (9%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FV
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA VT VGP N+L+HL+DP H I+ +L
Sbjct: 245 QALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 150/269 (55%), Gaps = 25/269 (9%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FV
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA VT VGP N+L+HL+DP H I+ +L
Sbjct: 245 QALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 136/230 (59%), Gaps = 12/230 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ ++ V RP W PG PPP+LDG+L GDFGFDPLGLG DPE LRW+ Q
Sbjct: 40 RAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQ 99
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM AGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+A
Sbjct: 100 AELMHSRWAMLAAAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWA 158
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WK 212
E +R+ DY++PG E + + GYPGG + R + E +
Sbjct: 159 EGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGGLWFD---WGNWGRGSPEPVMVLR 213
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
KEIKNGRLAM+A +G + QA T GPIDN+L HL+DP H + +
Sbjct: 214 TKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 136/226 (60%), Gaps = 17/226 (7%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG+L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
FAM G AG + ++L G+ W++ G + +A TLF++++ LMGF
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGF 165
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLK
Sbjct: 166 AEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
EIKNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + ++ +L
Sbjct: 225 EIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 144/245 (58%), Gaps = 28/245 (11%)
Query: 41 GTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
G++R+ + VVRA+ P W YLDG+L GDFGFDPLGL DPE
Sbjct: 29 GSSRKSASFVVRAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGT 87
Query: 92 ------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE----- 136
RW E+++ RFAM G AG + ++ G+ LP W++ G +
Sbjct: 88 GGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALP-WFKTGVIPPAGTY 146
Query: 137 FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPL 195
+A TLF+ ++ LMGFAE +R+ D+ PGS K+ F GLE L G +P YPGGPL
Sbjct: 147 NYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPL 205
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 255
NPLG KD ++ +E KLKEIKNGRLAM+A+LG F+Q VT VGP N+L+HLSDP +
Sbjct: 206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNN 265
Query: 256 IIQTL 260
++ +L
Sbjct: 266 VLTSL 270
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 137/231 (59%), Gaps = 13/231 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++ T+ ++TV RP W PG PPP+LDG+L GDFGFDPLGLG +PE LRW+ Q
Sbjct: 46 RANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQ 105
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGF 155
AEL+H R+AM AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+
Sbjct: 106 AELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGW 164
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----W 211
AE +R+ DY+ PG E F + + GYPGG + A R + E
Sbjct: 165 AEGRRWADYLRPGCVDIEPRFPNRRNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVL 219
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ KEIKNGRLAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 220 RTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 270
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 123/189 (65%), Gaps = 4/189 (2%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG+L GDFGFDPLGL DPESLRW VQAELVH+R+AM G AGI + L GI
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
P WY AG E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F L G
Sbjct: 61 TPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTG 117
Query: 186 LEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNI 244
+ GYPGG +PLG + + +E + KEIKNGRLAM+A++G + Q T GPIDN+
Sbjct: 118 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 177
Query: 245 LEHLSDPWH 253
HL+DP H
Sbjct: 178 FAHLADPGH 186
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 138/231 (59%), Gaps = 13/231 (5%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++ T+ ++TV RP W PG PPP+LDG+L GDFGFDPLGLG +PE LRW+ Q
Sbjct: 7 RANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQ 66
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGF 155
AEL+H R+AM AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+
Sbjct: 67 AELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGW 125
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----W 211
AE +R+ DY+ PG E F + + + GYPGG + A R + E
Sbjct: 126 AEGRRWADYLRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVL 180
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ KEIKNGRLAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 181 RTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 231
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 137/227 (60%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W+ YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWVASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 224 KEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 136/227 (59%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 224 KEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 154/271 (56%), Gaps = 29/271 (10%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRY--------LATVVRAQQRPTWLPGVDP 65
SSSS + + S+G S L + G +R+ + V + RP W
Sbjct: 8 SSSSLTFSAEATRQSLGPRS--LQSPFGFSRKASFLVKAAAIPPVKQGSDRPLWFASKQS 65
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 66 LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILG 124
Query: 120 VTGI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS
Sbjct: 125 KAGLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSM 183
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
K+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG
Sbjct: 184 GKQ-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 242
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
FV+A VT VGP N+L+HL+DP H I+ +L
Sbjct: 243 FVRALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 136/227 (59%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPPETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 224 KEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 135/226 (59%), Gaps = 17/226 (7%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
FAM G AG + ++L G+ W++ G + +A TLF++++ LMGF
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGF 165
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLK
Sbjct: 166 AEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLK 224
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
EIKNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + ++ +L
Sbjct: 225 EIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 133/228 (58%), Gaps = 6/228 (2%)
Query: 39 KSGTTRRYLATVVRA--QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
K T+ ++TV RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W+ Q
Sbjct: 73 KLNATKGGVSTVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQ 132
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM VAGIL + L G E W++AGA E+ FA TLFIVQL+LMG+
Sbjct: 133 AELMHSRWAMLAVAGILIPEWLESLGFIENYNWFDAGAREY-FADPTTLFIVQLVLMGWV 191
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKE 215
E +R+ D I PG E + + GYPGG +PL + + KE
Sbjct: 192 EGRRWADMIKPGCVDIEPTLPNKTKPKPDV--GYPGGLWFDPLMWGRGSPEPVMVLRTKE 249
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
IKNGRLAM+A +G QA T GPI+N++ H++DP H I +
Sbjct: 250 IKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTSQ 297
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 146/249 (58%), Gaps = 28/249 (11%)
Query: 37 PAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P +S ++ R + VV+A P W YLDG+L GDFGFDPLGL D
Sbjct: 27 PTRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SD 85
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE- 136
PE +W E+++ R+AM GVAG + ++L G+ LP W++ G +
Sbjct: 86 PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALP-WFQTGVIPP 144
Query: 137 ----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYP 191
+A TLF++++ LMGFAE +R+ D+ PGS K+ F G E L G +P YP
Sbjct: 145 AGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGFEKFLGGSGDPAYP 203
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GGP+ NPLG KD R+ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP
Sbjct: 204 GGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADP 263
Query: 252 WHKTIIQTL 260
+ ++ +L
Sbjct: 264 VNNNVLTSL 272
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 147/249 (59%), Gaps = 28/249 (11%)
Query: 37 PAKSGTTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P++S ++ R + VV+A P W YLDG+L GDFGFDPLGL D
Sbjct: 27 PSRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SD 85
Query: 88 PESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE- 136
PE +W E+++ R+AM GVAG + ++L G+ LP W++ G +
Sbjct: 86 PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALP-WFQTGVIPP 144
Query: 137 ----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYP 191
+A TLF++++ LMGFAE +R+ D+ PGS K+ F G E L G +P YP
Sbjct: 145 AGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGFEKFLGGSGDPAYP 203
Query: 192 GGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GGP+ NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP
Sbjct: 204 GGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADP 263
Query: 252 WHKTIIQTL 260
+ ++ +L
Sbjct: 264 VNNNVLTSL 272
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 125/209 (59%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L G+FGFDPLGLG DPE L+W QAEL+HAR+AM GV+GIL
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILI 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D ++PGS E
Sbjct: 121 PEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEP 179
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ GYPGG +P+ + + KEIKNGRLAM+A LG QA
Sbjct: 180 KLPNRPNPKPDV--GYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 237
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
PIDN++ HL+DP H I +
Sbjct: 238 VYVGGSPIDNLMAHLADPGHVNIFSAFTS 266
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 150/275 (54%), Gaps = 33/275 (12%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQ----------QRPTWL 60
L SSS +F V +S + LP+ G +R+ L VRA RP W
Sbjct: 6 LVSSSSLTFAAEAVRQS---FRARSLPSSVGCSRKGL---VRAAATPPVKQGGVDRPLWF 59
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILF 114
YLDG+L GD+GFDPLGL DPE RW E+++ RFAM G G +
Sbjct: 60 ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIA 118
Query: 115 TDLLRVTGI---RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ L G+ W++ G + +A TLF++++ LMGFAE +R+ D+
Sbjct: 119 PEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAK 178
Query: 167 PGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
PGS K+ F GLE G P YPGGP NPLG KD ++ +E KLKE+KNGRLAM+A
Sbjct: 179 PGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 237
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+LG F+Q VT VGP N+L+H++DP + ++ +L
Sbjct: 238 ILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 133/234 (56%), Gaps = 13/234 (5%)
Query: 37 PAKSGTTRRYLATVVRA---------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P TRR +A + RP W PG PP +LDG+L GDFGFDPLGLG D
Sbjct: 28 PTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSD 87
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE L+W+ QAEL+HAR+AM V GIL +LL G E WY+AGA E+ F TLF+
Sbjct: 88 PELLKWFAQAELMHARWAMLAVFGILVPELLEKIGYIENFSWYDAGAREY-FVDPTTLFV 146
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIR 206
VQ+ LMG+ E +R+ D ++PGS E + + GYPGG +P+ +
Sbjct: 147 VQMGLMGWVEGRRWADMVNPGSVDIEPKVPHITNPKPDV--GYPGGLWFDPMMWGRGSPE 204
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ KEIKNGRLAM+A +G + QA T GPI+N++ HL+DP H I
Sbjct: 205 PVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 135/227 (59%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+ P + ++ +L
Sbjct: 224 KEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNNVLTSL 270
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 123/209 (58%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W+ QAEL+H R+AM AGIL
Sbjct: 55 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILI 114
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G + W++AG E+ FA TLF+VQL+LMG+ E +R+ D I PG +
Sbjct: 115 PEWLERLGFIDNFNWFDAGTREY-FADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDP 173
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ GYPGG +P + + KEIKNGRLAM+A +G + QA
Sbjct: 174 KL--PHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQA 231
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
T GPIDN++ H++DP H I +
Sbjct: 232 IYTGEGPIDNLMAHIADPGHCNIFSAFTS 260
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 125/199 (62%), Gaps = 4/199 (2%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG P +L L GD+GFDPL LG+DPE L+WYVQAEL H R+AM GVAG ++L
Sbjct: 2 WMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEIL 61
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
GI LP W+EA + + F TLF VQ+L+M +AE +R+ D PGS +++ + F
Sbjct: 62 TNMGISNLPNWHEAPSYDGYFTDATTLFWVQMLMMNWAEVRRWQDIRKPGSVSEDPTPFS 121
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
A L GYPGG + +PLG AK + + K KEI NGRLAMVA GI VQ T V
Sbjct: 122 -NAKLPAGVVGYPGG-IFDPLGYAKG--DLKTLKAKEIANGRLAMVAFAGIMVQYDHTGV 177
Query: 239 GPIDNILEHLSDPWHKTII 257
GP+ N++ H++DP H +
Sbjct: 178 GPVANLVSHMADPAHNNVF 196
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 123/209 (58%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPESL+W+ QAEL+H R+AM AGIL
Sbjct: 55 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILI 114
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G + W++AG E+ FA TLF+VQL+LMG+ E +R+ D I PG +
Sbjct: 115 PEWLERLGFIDNFNWFDAGTREY-FADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDP 173
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ GYPGG +P + + KEIKNGRLAM+A +G + QA
Sbjct: 174 KLPHKTKPKPDI--GYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQA 231
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
T GPIDN++ H++DP H I +
Sbjct: 232 IYTGEGPIDNLMAHIADPGHCNIFSAFTS 260
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 132/212 (62%), Gaps = 5/212 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE+L+W+ QAEL+HAR+AM VAGIL
Sbjct: 59 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILL 118
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ G+ + WY+AG+ E+ FA TL + QL LMG+ E +R+ D ++PGS +
Sbjct: 119 PEWFESLGLIQNFSWYDAGSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ A+ + GYPGG +P+ + + KEIKNGRLAM+A +G++ QA
Sbjct: 178 KLPHKKKAMADV--GYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQA 235
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
T GP++N+ H++DP H I + SGS
Sbjct: 236 IYTGQGPLENLAAHVADPGHCNIFSAFS-SGS 266
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 138/234 (58%), Gaps = 19/234 (8%)
Query: 26 KSSIGITSAFLPAKSGTTRRYLAT-------VVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
+SS+ + ++ +P R ++ R P+W+PG D P YL+GTL GDFG
Sbjct: 7 RSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPSWMPGADLPGYLNGTLPGDFG 66
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP----VWYEAGA 134
FDPL LG+DP L+WY QAEL++ARFAM VAGIL +LL G P WY+AG
Sbjct: 67 FDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGF-SWPGAGVAWYDAGK 125
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
E+ FA +LF VQ+LL + E +RY D++ PGS ++ F +G EPGYPGG
Sbjct: 126 FEY-FAPASSLFGVQMLLFAWVEIRRYQDFVKPGSANQD-PIFTNNKLPDGNEPGYPGG- 182
Query: 195 LLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 247
+ +P G +K DI++ KLKEIKNGRLAM+A G QA T P+ N+ H
Sbjct: 183 IFDPFGWSKGDIKSL---KLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLSTH 233
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 135/227 (59%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELP-----VWYEAGAVEFKFASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP V AG + +A TLF++++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPAGTYTY-WADNYTLFVLEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KL
Sbjct: 165 FAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 224 KEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 134/225 (59%), Gaps = 10/225 (4%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA SG+ R V Q + +WLPG+ P YLDG+L GD GFDPL L EDPE LRW+VQ
Sbjct: 15 PAASGSPRSTRRDVA-VQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQ 73
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
A++V+ R+AM GVAG+L ++L G+ P W E FAS+ T V + +
Sbjct: 74 ADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YV 132
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEI 216
E +R+ D +PGS ++ F +L E GYPG + NPL A E K KE+
Sbjct: 133 EIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGYPGR-VFNPLNFA-----PLENKEKEL 184
Query: 217 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
NGRLAM+A LG VQ +V GP +N+ +HL+DPWH TIIQT++
Sbjct: 185 ANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTIS 229
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 127/209 (60%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GIL
Sbjct: 63 DRPLWFPGSAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILI 122
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WYEAG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 123 PECLERLGFIENFSWYEAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 181
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ + GYPGG + + + + KEIKNGRLAM+A +G QA
Sbjct: 182 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 239
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ T PI+N++ HL+DP H + +
Sbjct: 240 TYTSQDPIENLMAHLADPGHCNVFSAFTS 268
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 122/198 (61%), Gaps = 4/198 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W QAEL+HAR+AM GV+GIL
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILI 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D ++PGS E
Sbjct: 121 PEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEP 179
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ GYPGG +P+ + + KEIKNGRLAM+A LG QA
Sbjct: 180 KLPNRPNPKPDV--GYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 237
Query: 234 SVTHVGPIDNILEHLSDP 251
PIDN++ HL+DP
Sbjct: 238 VYVGGSPIDNLMAHLADP 255
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 127/209 (60%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GI+
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIII 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 124 PECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ + GYPGG + + + + KEIKNGRLAM+A LG QA
Sbjct: 183 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ T PI+N++ HL+DP H + +
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 136/227 (59%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + R W YLDG+L GDFGFDPLGL DPE +W E+++ R
Sbjct: 47 VKQGADRQLWFASKQSLTYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMG 154
FAM G AG + ++L G+ LP W++ G + +A TLF+ ++ LMG
Sbjct: 106 FAMLGAAGAIAPEILGKAGLIPPETALP-WFQTGVIPPAGTYDYWADPYTLFVFEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KL
Sbjct: 165 FAEHRRFQDWAKPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP + ++ +L
Sbjct: 224 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 129/213 (60%), Gaps = 4/213 (1%)
Query: 39 KSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
K+ +R +A A RP W PG P +LDG+L GD+GFDPL L DPE +W VQAE
Sbjct: 20 KTRASRGPVAVSANAD-RPVWYPGKAPAAHLDGSLPGDYGFDPLSLSADPEMRQWMVQAE 78
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
L HAR+AM GVAG + +LL G+ +LP W +A ++ +A TLF +Q+ + +AE
Sbjct: 79 LQHARWAMLGVAGCVAPELLTKIGVADLPNWVDAATYQY-WAPGGTLFFIQMAMFNWAEI 137
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R+ D +PGS + FG + + GYP G L + G AKD + E KLKEIKN
Sbjct: 138 RRWQDMKNPGSVNTD-PLFGYNSNDTNTDVGYPKG-LFDKFGWAKDEKTTAELKLKEIKN 195
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GRLAM+A LGI Q T VGP++N+ H+ +P
Sbjct: 196 GRLAMLAFLGICAQYVQTGVGPVENLFSHMGNP 228
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 127/209 (60%), Gaps = 4/209 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GI+
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIII 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 124 PECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ + GYPGG + + + + KEIKNGRLAM+A LG QA
Sbjct: 183 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+ T PI+N++ HL+DP H + +
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 133/226 (58%), Gaps = 19/226 (8%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARF 104
V+ R W YLDG+L GDFGFDPLGL DPE +W E+++ R+
Sbjct: 49 VKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRY 107
Query: 105 AMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
AM G G + ++L G+ LP W+ G + +A TLF+ ++ LMGF
Sbjct: 108 AMLGAVGAIAPEILGKAGLIPPETALP-WFRTGVIPPAGTYSYWADPYTLFVFEMALMGF 166
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R+ D+ PGS K+ F G E L G EP YPGGPL NPLG KD ++ ++ KLK
Sbjct: 167 AEHRRFQDWAKPGSMGKQ-YFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLK 225
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP H I+ +L
Sbjct: 226 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 126/206 (61%), Gaps = 4/206 (1%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DP++L+W+ QAEL+H+R+AM V GI+
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIII 123
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E
Sbjct: 124 PECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP 182
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ + GYPGG + + + + KEIKNGRLAM+A LG QA
Sbjct: 183 KY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQA 240
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQT 259
+ T PI+N++ HL+DP H +
Sbjct: 241 TYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 138/227 (60%), Gaps = 19/227 (8%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHAR 103
V + RP W YLDG+L GD+GFDPLGL DPE RW E+++ R
Sbjct: 47 VKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGR 105
Query: 104 FAMAGVAGILFTDLLRVTGI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMG 154
+AM G G + ++L G+ LP W++ G A + + A TLF+ ++ LMG
Sbjct: 106 YAMLGAVGAIAPEILGKLGLIPPETALP-WFKTGVFPPAGTYNYWADPYTLFVFEMALMG 164
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 213
FAE +R+ D+ +PGS K+ F GLE L G +P YPGGPL NPLG KD ++ ++ KL
Sbjct: 165 FAEHRRFQDWANPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKL 223
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KE+KNGRLAM+A+LG F Q VT VGP+ N+L+HL+DP + II +L
Sbjct: 224 KEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 270
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 132/234 (56%), Gaps = 13/234 (5%)
Query: 37 PAKSGTTRRYLATVVRA---------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P TRR +A + RP W PG PP +LDG+L GDFGFDPLGLG D
Sbjct: 28 PTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSD 87
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE L+W+ QAEL+H+R+AM V GIL +LL G E WY+AG E+ F TLF+
Sbjct: 88 PELLKWFAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTREY-FVDPTTLFV 146
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIR 206
VQ+ LMG+ E +R+ D ++PGS E + + GYPGG +P+ +
Sbjct: 147 VQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDV--GYPGGLWFDPMMWGRGSPE 204
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ KEIKNGRLAM+A +G + QA T GPI+N++ HL+DP H I
Sbjct: 205 PVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 131/212 (61%), Gaps = 5/212 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE+L+W+ QAEL+HAR+AM VAGIL
Sbjct: 59 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILL 118
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ G+ + WY+AG+ E+ FA TL + QL LMG+ E +R+ D ++PGS +
Sbjct: 119 PEWFESLGLIQNFSWYDAGSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 177
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
+ A + GYPGG +P+ + + KEIKNGRLAM+A +G++ QA
Sbjct: 178 KLPHKKKAKADV--GYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQA 235
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
T GP++N+ H++DP H I + SGS
Sbjct: 236 IYTGQGPLENLAAHVADPGHCNIFSAFS-SGS 266
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 144/246 (58%), Gaps = 28/246 (11%)
Query: 24 VNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
NK+++G + PA++ RR + V RA+QR +W PG P YL G LAGD+GFDPLG
Sbjct: 6 ANKAALGFRA---PAQA---RR--SVVARAEQRASWFPGNPAPEYLKGELAGDYGFDPLG 57
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE------LPVWYEAGAV-- 135
G++P L W VQAELVH R+AM G AGIL ++ TG++ P W+EAG V
Sbjct: 58 FGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVA 117
Query: 136 EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE--------GSFFGLEAALEGLE 187
E S +L LLMG+AE KR D++ PGSQ GS G+E L E
Sbjct: 118 ESGPWSMGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAKE 177
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH--VGPIDNIL 245
GYPGG + +P ++K+ + +K E+ NGRLAM AM G FV + + GPIDN++
Sbjct: 178 NGYPGG-IFDPFQMSKNEAKYKWYKQSEVTNGRLAMTAMFG-FVSQHIAYPGKGPIDNLV 235
Query: 246 EHLSDP 251
+H+S+P
Sbjct: 236 DHVSNP 241
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 150/276 (54%), Gaps = 32/276 (11%)
Query: 14 SSSSSFICNDVNKSS---IGITSAFLPAKSGTTRRYLATVVRAQ----------QRPTWL 60
S S S I D+ + +G + LP + R + VR+Q R W
Sbjct: 11 SPSLSAIGGDIGRRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQGDRQLWF 70
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARFAMAGVAGILF 114
YLDG+L GD+GFDPLGL DPE W V E+++ R+AM G G +
Sbjct: 71 ASDQSLSYLDGSLPGDYGFDPLGL-MDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIA 129
Query: 115 TDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYI 165
++L G+ LP W++ G + +A TLF++++ LMGFAE +R DY
Sbjct: 130 PEILGKLGLIPQETALP-WFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYR 188
Query: 166 SPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
+PGS K+ F GLE L G P YPGGPL NPLG KD ++ +E KLKE+KNGRLAM+
Sbjct: 189 NPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAML 247
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A+LG F+Q VT VGP N+L+HL+DP H + +
Sbjct: 248 AILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLTNM 283
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 132/226 (58%), Gaps = 19/226 (8%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARF 104
V+ R W YLDG+L GDFGFDPLGL DPE +W E+++ R+
Sbjct: 49 VKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRY 107
Query: 105 AMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGF 155
AM G G + ++L G+ LP W+ G + +A TLF+ ++ LMGF
Sbjct: 108 AMLGAVGAIAPEILGKAGLIPPETALP-WFRTGVIPPAGTYSYWADPYTLFVFEMALMGF 166
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R D+ PGS K+ F G E L G EP YPGGPL NPLG KD ++ ++ KLK
Sbjct: 167 AEHRRLQDWAKPGSMGKQ-YFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLK 225
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP H I+ +L
Sbjct: 226 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 131/234 (55%), Gaps = 13/234 (5%)
Query: 37 PAKSGTTRRYLATVVRA---------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGED 87
P TRR +A + RP W PG PP +LDG+L GDFGFDPLGLG D
Sbjct: 28 PTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSD 87
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE L+W+ QAEL+H+R+AM V GIL +LL G E WY+AG E+ F TLF+
Sbjct: 88 PELLKWFAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTREY-FVDPTTLFV 146
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIR 206
VQ+ LMG+ E +R+ D ++PGS E + + GYPGG +P+ +
Sbjct: 147 VQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDV--GYPGGLWFDPMMWGRGSPE 204
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ KEIKNG LAM+A +G + QA T GPI+N++ HL+DP H I
Sbjct: 205 PVMVLRTKEIKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 140/244 (57%), Gaps = 28/244 (11%)
Query: 42 TTRRYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL- 91
++ R ++ VRA+ P W YLDG+L GD+GFDPLGL DPE
Sbjct: 31 SSSRKVSFAVRAEATPPAKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTG 89
Query: 92 -----RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK---- 138
W E+++ R+AM G G + ++L G+ LP W++ G +
Sbjct: 90 GFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALP-WFKTGVIPPAGTYD 148
Query: 139 -FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLL 196
+A TLF+ +L LMGFAE +R+ D+ PG +K+ F G E EG P YPGGPL
Sbjct: 149 YWADPYTLFVFELALMGFAEHRRFQDFQKPGCLSKQ-YFLGFEKYFEGSGNPIYPGGPLF 207
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FVQA VT VGP N+L+HLSDP + I
Sbjct: 208 NPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVNNNI 267
Query: 257 IQTL 260
+ +L
Sbjct: 268 LTSL 271
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 139/252 (55%), Gaps = 31/252 (12%)
Query: 37 PAKSGTTR---RYLATVVRAQQRPT---------WLPGVDPPPYLDGTLAGDFGFDPLGL 84
P +S +R R VVRA P W YLDGTL GD+GFDPLGL
Sbjct: 16 PVQSAVSRSSARKAPFVVRASSSPPAKQGADRQLWFASKQSLSYLDGTLPGDYGFDPLGL 75
Query: 85 GEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGA 134
DPE +W E+++ R+AM G G + ++ GI LP W++ G
Sbjct: 76 -SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPPETALP-WFKTGV 133
Query: 135 VE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EP 188
+ +A + TLF+ + LMGFAE +R D+ +PGS K+ F GLE L G +P
Sbjct: 134 IPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKFLAGSGDP 192
Query: 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHL 248
YPGGPL NPLG K + E KLKEIKNGRLAM+A+LG F+Q VT VGP N+L+HL
Sbjct: 193 SYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHL 252
Query: 249 SDPWHKTIIQTL 260
+DP + ++ +L
Sbjct: 253 ADPVNNNVLTSL 264
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 130/207 (62%), Gaps = 20/207 (9%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDP 88
+G TS P S TRR ++ V +A ++P WLPGV+ P +L+ L D+GFDPLGLG +P
Sbjct: 6 LGQTSRVTPTNS--TRR-MSPVTQATEQPVWLPGVNVPQHLNRNLPADYGFDPLGLGSEP 62
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA----STRT 144
E+L+WYVQAELVH RFAM GVAGIL LL GI +P WYEAG V + + +T
Sbjct: 63 EALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNVPQWYEAGKVAIESQPFGLNFQT 122
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA------ALEGL-EPGYPGGPLLN 197
L QL +M +AETKR++++ +PGSQ+ S+ G E AL G +P YPGG L N
Sbjct: 123 LLGFQLFMMTWAETKRWVEFKNPGSQSNPDSYPGAEMLPGKVFALGGSGDPNYPGG-LFN 181
Query: 198 PLGLAKDIRNAREWKLKEIKNGRLAMV 224
P+G+ D K+KEI NGR A +
Sbjct: 182 PMGMGDD-----SMKVKEIANGRTACL 203
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 150/277 (54%), Gaps = 33/277 (11%)
Query: 2 AVAVGRGFLLQPSSSSSFICNDVNKSSIGITS-AFLPAKSGTTRRYLATVVRAQQRPTWL 60
A+ GR L +P SS + K+ + + A PAK G R+ W
Sbjct: 5 ALLSGRQLLGRPLQSSVSRSSSSRKAPFMVRAEATPPAKQGADRQ------------LWF 52
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILF 114
YLDGTL GDFGFDPLGL DPE RW E+ + R AM GV G++
Sbjct: 53 ASKQSLSYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVA 111
Query: 115 TDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYI 165
+LL G+ +P W++ G + +A TLF+ +L L+GFAE +R+ D+
Sbjct: 112 PELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADPYTLFVFELALVGFAEHRRFQDWY 170
Query: 166 SPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLKEIKNGRLAM 223
+PGS K+ F GLE L G EP YPGGPL NPLG K +E KLKEIKNGRLAM
Sbjct: 171 TPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAM 229
Query: 224 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+A LG VQA T VGP+ N+L+HL+DP H I+ +L
Sbjct: 230 LAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 266
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 21/210 (10%)
Query: 68 YLDGTLAGDFGFDPLGLGE--------DPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
YLDG+L GD+GFDPLGL + DP LR+ AE+++ RFAM G AG + ++
Sbjct: 71 YLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRY---AEIINGRFAMLGAAGAIAPEIFG 127
Query: 120 VTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G+ +E + W++ G + ++ + A TLF++++ LMGFAE +R DY PGS
Sbjct: 128 KIGLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMG 187
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
K+ F G E L G +P YPGGPL N LG +D ++ ++ K+KE+KNGRLAM+A+LG F
Sbjct: 188 KQ-YFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYF 246
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+QA T VGP N+L+HLSDP + ++ L
Sbjct: 247 IQAIFTGVGPFQNLLDHLSDPANNNVLTNL 276
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 129/222 (58%), Gaps = 14/222 (6%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
SG RR + V +A RP WLPG PP +L G L GDFGFDPLGLG +P+SL+W+ ++EL
Sbjct: 14 SGVARR--SVVAKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESEL 71
Query: 100 VHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
VH+R+AMA VAGIL +++R WY AG+ L + M + E +
Sbjct: 72 VHSRWAMAAVAGILVQEIVRPDVF-----WYSAGSQVESPLGPLGLLAFEFFCMHWVELR 126
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
R+ D PGS ++ F + L EPGYPGG + P + D+ E K+KEIKNG
Sbjct: 127 RWQDLRKPGSVDQDPIF--SQYKLPPHEPGYPGG-VFAPF-IPGDL---AELKVKEIKNG 179
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
RLAM+A +G + A VT GPI + EHL+DPW TI A
Sbjct: 180 RLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFSKAA 221
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 131/226 (57%), Gaps = 19/226 (8%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARF 104
V+ R W YLDG+L GD+GFDPLGL DPE W E+++ R+
Sbjct: 63 VKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGL-MDPEGPGGFIEPGWLAYGEIINGRY 121
Query: 105 AMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGF 155
AM G G + ++L G+ LP W+ G + +A TLF++++ LMGF
Sbjct: 122 AMLGAVGAIAPEILGKLGLIPQETALP-WFRTGVIPPAGTYDYWADPFTLFVLEMALMGF 180
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 214
AE +R DY PGS +K+ F G E L G P YPGGPL NPLG KD ++ +E KLK
Sbjct: 181 AEHRRLQDYRYPGSMSKQ-YFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLK 239
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E+KNGRLAM+A++G F+Q VT VGP N+L+HL+DP + ++ L
Sbjct: 240 EVKNGRLAMLAIVGYFIQGLVTGVGPFQNLLDHLADPVNNNLLTNL 285
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 131/208 (62%), Gaps = 17/208 (8%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 34 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 92
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF++++ LMGFAE +R DY PGS K+
Sbjct: 93 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 152
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
F GLE L G P YPGGP+ N LG K+ + +E K+KE+KNGRLAM+A+LG F Q
Sbjct: 153 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQ 211
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A T VGP N+L+HL+DP H ++ L
Sbjct: 212 AIFTGVGPFQNLLDHLADPVHNNVLTNL 239
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 122/196 (62%), Gaps = 19/196 (9%)
Query: 75 GDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----R 124
GDFGFDPLGL DPE +W E+++ RFAM G G + ++L G+
Sbjct: 1 GDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 125 ELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
LP W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GL
Sbjct: 60 ALP-WFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGL 117
Query: 180 EAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L G +P YPGGP NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT V
Sbjct: 118 EKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGV 177
Query: 239 GPIDNILEHLSDPWHK 254
GP N+L+HL+DPWH
Sbjct: 178 GPFQNLLDHLADPWHN 193
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 131/208 (62%), Gaps = 17/208 (8%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 16 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF++++ LMGFAE +R DY PGS K+
Sbjct: 75 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 134
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
F GLE L G P YPGGP+ N LG K+ + +E K+KE+KNGRLAM+A+LG F Q
Sbjct: 135 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQ 193
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A T VGP N+L+HL+DP H ++ L
Sbjct: 194 AIFTGVGPFQNLLDHLADPVHNNVLTNL 221
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 131/208 (62%), Gaps = 17/208 (8%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 16 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF++++ LMGFAE +R DY PGS K+
Sbjct: 75 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 134
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
F GLE L G P YPGGP+ N LG K+ + +E K+KE+KNGRLAM+A+LG F Q
Sbjct: 135 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQ 193
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A T VGP N+L+HL+DP H ++ L
Sbjct: 194 AIFTGVGPFQNLLDHLADPVHNNVLTNL 221
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 110/170 (64%), Gaps = 10/170 (5%)
Query: 38 AKSGTTRRYLATVVRA-------QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES 90
AKSG +VVRA +RP W PG P +L+G+L GD+GFDP+G G P S
Sbjct: 29 AKSGRNAAPKRSVVRAGGAAPEPSERPLWYPGTKAPEWLNGSLPGDYGFDPVGFGSSPSS 88
Query: 91 LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQL 150
LRW V AELVHAR+AM GVAG+L +L+ VT +P WYEAG V + FA T TL +V
Sbjct: 89 LRWMVHAELVHARWAMLGVAGVLGQELVHVTN-GSIPHWYEAGKVSY-FADTPTLIVVMH 146
Query: 151 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
+LMGF ETKRY D ++PGSQ + G F G E + G PGYPGG L +PLG
Sbjct: 147 ILMGFVETKRYFDIVNPGSQAQPG-FAGAERLMLGTSPGYPGGILFDPLG 195
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 127/205 (61%), Gaps = 19/205 (9%)
Query: 72 TLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
+L GD+GFDPLGL DPE RW E+++ RFAM G AG + ++L G+
Sbjct: 14 SLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 124 --RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
LP W++ G + +A TLF++++ LMGFAE +R D+ +PGS K+ F
Sbjct: 73 AETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YF 130
Query: 177 FGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 235
GLE L G P YPGGP NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q V
Sbjct: 131 LGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLV 190
Query: 236 THVGPIDNILEHLSDPWHKTIIQTL 260
T VGP N+L+HL+DP + ++ +L
Sbjct: 191 TGVGPYQNLLDHLADPVNNNVLTSL 215
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 135/226 (59%), Gaps = 18/226 (7%)
Query: 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARF 104
+ R W + YLDGTL GDFGFDPLGL DPE RW E+ + R
Sbjct: 42 AKQGDRQLWFAXXZXLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRT 100
Query: 105 AMAGVAGILFTDLLRVTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFA 156
AM GV G++ + L G+ E + W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 101 AMMGVVGMIAPEALGKVGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 160
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 214
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 161 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 219
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 220 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 265
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 134/226 (59%), Gaps = 20/226 (8%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFA 105
+ R W YLDGTL GDFGFDPLGL DPE RW E+ + R A
Sbjct: 44 QNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTA 102
Query: 106 MAGVAGILFTDLLRVTGI----RELPVWYEAGAV----EFKF-ASTRTLFIVQLLLMGFA 156
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 161
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 214
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 162 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 220
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 221 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 127/221 (57%), Gaps = 18/221 (8%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAG 108
R W YLDGTL GD+GFDPLGL DP W AE+++ R+AM G
Sbjct: 58 NRQLWFASSQSLSYLDGTLPGDYGFDPLGL-SDPAGAGNFMTPNWLSYAEIINGRYAMLG 116
Query: 109 VAGILFTDLLRVTGI---RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKR 160
AG + ++ GI + VW++ G A + + A TLF +++ LMGFAE +R
Sbjct: 117 AAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRR 176
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
DY PGS K+ F G E L G +P YPGG + NP G KD ++ R K+KE+KNG
Sbjct: 177 AQDYYKPGSMGKQ-YFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVKNG 234
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
RLAM+A+LG F+QA T VGP N+L+HL+DP+ I+ L
Sbjct: 235 RLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNL 275
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 133/215 (61%), Gaps = 20/215 (9%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PSSSS+F+ + S +G T A + TRR L +A+ + WLPG+ P YLD
Sbjct: 13 LRPSSSSAFLGHS---SRLGRT-----ATASPTRRSL----KAEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++L G+ P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GY
Sbjct: 121 DAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
PG + NPL A + E K KE+ NG L +A
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKELANGELHCIA 207
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
A L+G PG G +PLGLA+D N R + E+ NGR AM+ + G+ + +T G
Sbjct: 57 AYLDGSLPGDNG---FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 241 ID 242
I+
Sbjct: 114 IN 115
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 134/226 (59%), Gaps = 20/226 (8%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFA 105
+ R W YLDGTL GDFGF+PLGL DPE RW E+ + R A
Sbjct: 44 QNDNRQLWFASKQSLTYLDGTLPGDFGFNPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTA 102
Query: 106 MAGVAGILFTDLLRVTGI----RELPVWYEAGAV----EFKF-ASTRTLFIVQLLLMGFA 156
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 161
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 214
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 162 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 220
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 221 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+ TLF+
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFV 59
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL A +
Sbjct: 60 IEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL-- 114
Query: 208 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E K KEI NGRLAM+A LG +Q +VT GP DN+L+H+SDPWH TI+QTL
Sbjct: 115 --EAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 127/220 (57%), Gaps = 14/220 (6%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+ RR + V +A RP WLPG PP +L G L GDFGFDPLGLG + ESL+W+ ++ELVH
Sbjct: 17 SARR--SVVAKASSRPLWLPGSTPPAHLKGDLPGDFGFDPLGLGANAESLKWFKESELVH 74
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
+R+AMA VAGIL +++R WY AG L V+ LM + E +R+
Sbjct: 75 SRWAMAAVAGILVQEIVRPDVF-----WYNAGKEVESPLGPLGLLAVEFFLMHWVEVRRW 129
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
D PGS ++ F + L E GYPGG + P + D+ E K+KEIKNGRL
Sbjct: 130 QDLRKPGSVDQDPIFS--QYKLPPHEVGYPGG-VFAPF-IPGDL---AELKVKEIKNGRL 182
Query: 222 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
AM+A +G + A VT GPI + EHL+DPW TI A
Sbjct: 183 AMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFSKAA 222
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 126/221 (57%), Gaps = 18/221 (8%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAG 108
R W YLDGTL GD+GFDPLGL DP W AE+++ R+AM G
Sbjct: 58 NRQLWFASSQSLSYLDGTLPGDYGFDPLGL-SDPAGAGNFMTPNWLSYAEIINGRYAMLG 116
Query: 109 VAGILFTDLLRVTGI---RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKR 160
AG + ++ GI VW++ G A + + A TLF +++ LMGFAE +R
Sbjct: 117 AAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAEHRR 176
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
D+ PGS K+ F G E L G +P YPGG + NP G KD ++ R K+KE+KNG
Sbjct: 177 AQDFYKPGSMGKQ-YFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEVKNG 234
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
RLAM+A+LG F+QA T VGP N+L+HL+DP+ I+ L
Sbjct: 235 RLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNL 275
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 23/234 (9%)
Query: 50 VVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVH 101
VV+A++ R + YLDG+ GDFG+DPLGL PE +W +E++H
Sbjct: 68 VVKAEKSDRQLFFSDKAAQSYLDGSKPGDFGYDPLGL-YKPEGAGGFIDPKWLAYSEVIH 126
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLL 151
R+AM G+AG++ ++L G+ +P VW++ G + + +AS LF ++++
Sbjct: 127 CRYAMLGMAGMVAPEILGKLGL--IPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVV 184
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
LM FAE +R+ DY PGSQ+K+ F GLE G +P YPGG + N LG KD ++ +
Sbjct: 185 LMQFAELRRWQDYRHPGSQSKQ-YFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMND 243
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
KLKE+KNGRLAMVA LG F+QA T GP N+ +HL+DP++ I+ T G
Sbjct: 244 LKLKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTFGKIG 297
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 23/234 (9%)
Query: 50 VVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVH 101
VV+A++ R + YLDG+ GDFG+DPLGL PE +W +E++H
Sbjct: 46 VVKAEKSDRQLFFSDKAAQSYLDGSKPGDFGYDPLGL-YKPEGAGGFIDPKWLAYSEVIH 104
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLL 151
R+AM G+AG++ ++L G+ +P VW++ G + + +AS LF ++++
Sbjct: 105 CRYAMLGMAGMVAPEILGKLGL--IPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVV 162
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNARE 210
LM FAE +R+ DY PGSQ+K+ F GLE G +P YPGG + N LG KD ++ +
Sbjct: 163 LMQFAELRRWQDYRHPGSQSKQ-YFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMND 221
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
KLKE+KNGRLAMVA LG F+QA T GP N+ +HL+DP++ I+ T G
Sbjct: 222 LKLKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTFGKIG 275
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 119/207 (57%), Gaps = 29/207 (14%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V A RPTWLPG+ PP +L G+LAGD GFDPLGLG+D L+WY +AE + R+AM V
Sbjct: 22 VCAATARPTWLPGLSPPAHLKGSLAGDSGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
GIL +LL VT P WYEAGA E+ ST L ++ ++MGF E KRY + + G+
Sbjct: 82 TGILGQELLGVT-----PSWYEAGAKEYDIPST-PLTAIEFIVMGFLEIKRYQGFKTTGT 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G +P +P GL N+ KE+KNGRLAMVA +G
Sbjct: 136 --------------SGFINSFP----FDPAGL-----NSASMATKEVKNGRLAMVAFVGF 172
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTI 256
VQA VT PI+ + +HLSDP+ K I
Sbjct: 173 AVQALVTRTQPIEGLTKHLSDPFGKNI 199
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 139/241 (57%), Gaps = 25/241 (10%)
Query: 11 LQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
L+PSSSS+F+ + S +G T A + TRR L +A+ + WLPG+ P YLD
Sbjct: 13 LRPSSSSAFLGHS---SRLGRT-----ATASPTRRSL----KAEAKGEWLPGLPSPAYLD 60
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GVAG+L ++L G+ P WY
Sbjct: 61 GSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWY 120
Query: 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190
+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F +L E GY
Sbjct: 121 DAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSY--SLPPHECGY 177
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 250
PG + NPL A + E K KE+ N A G Q + V P+ H D
Sbjct: 178 PGS-VFNPLNFAPTL----EAKEKELAN---AQRHRQGALRQPAAAPVRPMAQ--HHHPD 227
Query: 251 P 251
P
Sbjct: 228 P 228
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 119/196 (60%), Gaps = 4/196 (2%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
+LDG+L GDFGFDP GLG DP++L+W+ QAEL+H+R+AM V GI+ + L G E
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 137
Query: 128 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I PGS E + +
Sbjct: 138 SWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKY--PHKVNPKPD 194
Query: 188 PGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 246
GYPGG + + + + KEIKNGRLAM+A LG QA+ T PI+N++
Sbjct: 195 AGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMA 254
Query: 247 HLSDPWHKTIIQTLAN 262
HL+DP H + +
Sbjct: 255 HLADPGHCNVFSAFTS 270
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 120/211 (56%), Gaps = 19/211 (9%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GDFGFDPLGL DPE W +E++H R+AM G+AG L ++L
Sbjct: 63 YLDGTLPGDFGFDPLGLC-DPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 122 GI----RELPVWYEAGAVE------FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G E VW+ +G + + TLF V+ ++M FAE KR+ DY SPGSQ
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQG 181
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
K+ F GLEA G P YPGG N L L K ++ + EI+NGRLAM+A LG F
Sbjct: 182 KQ-YFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIACLGCF 240
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
QA +T GP N+L+HL+DP ++ LA
Sbjct: 241 GQAVMTTKGPFANLLDHLADPISNNVLGNLA 271
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 9/175 (5%)
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSS 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
TLF+++ +L + E +R+ D +PGS ++ F + +L E GYPGG + NPL A
Sbjct: 60 TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAP 116
Query: 204 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
+ E K KEI NGRL M+A LG +Q +VT GP DN+L+H+SDPWH TI+Q
Sbjct: 117 TL----EAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 166
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 132/208 (63%), Gaps = 17/208 (8%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GD+GFDPLGL DPE +W AE+++ RFAM G AG + ++L
Sbjct: 19 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEILGRI 77
Query: 122 GI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
G+ +E + W+++G + + + A TLF+++L LMGFAE +R DY PGS K+
Sbjct: 78 GLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFAEHRRAQDYYKPGSMGKQ 137
Query: 174 GSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
F GLE L G P YPGGP+ N LG K+ + +E KLKEIKNGRLAM+A+LG F+Q
Sbjct: 138 -YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEIKNGRLAMMAVLGYFIQ 196
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A T VGP N+L+HL+DP H ++ L
Sbjct: 197 AIFTGVGPFQNLLDHLADPVHNNVLTNL 224
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 126/220 (57%), Gaps = 14/220 (6%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
+ RR + V +A RP WLPG PP +L G L GDFGFDPLGLG + ESL+W+ ++ELVH
Sbjct: 17 SARR--SVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVH 74
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 161
R+AMA VAGIL +++R WY AG L V+ LM + E +R+
Sbjct: 75 CRWAMAAVAGILVQEIVRPDVF-----WYNAGKEVESPLGPLGLLAVEFFLMHWVELRRW 129
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
D PGS ++ F + L E GYPGG + P + D+ E K+KEIKNGRL
Sbjct: 130 QDLRKPGSVDQDPIFS--QYKLPAHEVGYPGG-VFAPF-IPGDL---AELKVKEIKNGRL 182
Query: 222 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
AM+A +G + A VT GPI + EHL+DP+ TI A
Sbjct: 183 AMLAFVGFVMAAQVTGKGPIAALQEHLADPFGTTIFSKAA 222
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 16/235 (6%)
Query: 44 RRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES-----LRWYVQAE 98
+ +ATV R++ + YLDGTL GDFGFDPLGL + S +W +E
Sbjct: 33 EKSIATVDRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSE 92
Query: 99 LVHARFAMAGVAGILFTDLLRVTGI---RELPVWYE------AGAVEFKFASTRTLFIVQ 149
++H R+AM G AG + ++L G+ + VWYE AG+ + +A T+F ++
Sbjct: 93 VIHGRWAMLGAAGCIAPEILGAAGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIFFIE 152
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNA 208
++ M FAE +R D+ PGS K+ F GLE G +P YPGGP N L K
Sbjct: 153 IVAMQFAELRRLQDFRYPGSMGKQ-YFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAM 211
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
+E KLKEIKNGRLAM+AMLG QA++T GP N+L+HL+DP + I+ +
Sbjct: 212 KELKLKEIKNGRLAMLAMLGYGAQATLTREGPFQNLLDHLADPVNNNILTNFGKA 266
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 121/199 (60%), Gaps = 19/199 (9%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+++ RFAM G AG + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R+ D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L G P YPGGP NPLG KD ++ +E KLKEIKNGRLAM+A+LG F+Q VT VGP
Sbjct: 118 LAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPF 177
Query: 242 DNILEHLSDPWHKTIIQTL 260
N+L+HL+DP + ++ +L
Sbjct: 178 QNLLDHLADPVNNNVLTSL 196
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 122/204 (59%), Gaps = 19/204 (9%)
Query: 73 LAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI--- 123
L GD+GFDPLGL DPE +W E+++ R+AM G G + ++ GI
Sbjct: 6 LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPP 64
Query: 124 -RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
LP W++ G + +A + TLF+ + LMGFAE +R D+ +PGS K+ F
Sbjct: 65 ETALP-WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFL 122
Query: 178 GLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
GLE L G +P YPGGPL NPLG K + E KLKEIKNGRLAM+A+LG F+Q VT
Sbjct: 123 GLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVT 182
Query: 237 HVGPIDNILEHLSDPWHKTIIQTL 260
VGP N+L+HL+DP + ++ +L
Sbjct: 183 GVGPFQNLLDHLADPVNNNVLTSL 206
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 139/241 (57%), Gaps = 20/241 (8%)
Query: 21 CNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFD 80
CN +++ +G S + R TVVRA+ R WLPG D P +LDG+L GDFGFD
Sbjct: 7 CNGLSRPILG--SPLAARQVSRARPVRQTVVRAE-RALWLPGGDAPAHLDGSLPGDFGFD 63
Query: 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG---AVEF 137
PLGLG DPE L W+ ++E VHAR+AM VAGI +++R WYEA + F
Sbjct: 64 PLGLGADPERLAWFAESERVHARWAMLAVAGIAVQEVVRPDVF-----WYEAALKSPMPF 118
Query: 138 KFASTRTLFIV--QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ L +V +L M F E +R D+ +PGSQ ++ F + L E GYPGG +
Sbjct: 119 GNSPAAILGLVAFELFAMHFVEVRRAYDFKNPGSQDQDPIFSNNK--LPKHEVGYPGG-I 175
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 255
P+ + D+ E KLKEIKNGRLAM+A G +QA VT GP+ ++ +HLS+P T
Sbjct: 176 FAPV-IPGDL---AELKLKEIKNGRLAMLAFAGFVMQAQVTGKGPLASLGDHLSNPIGTT 231
Query: 256 I 256
I
Sbjct: 232 I 232
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 17/237 (7%)
Query: 26 KSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLG 85
K+++ T + S ++ R VVRA+ R W PGV P YLDG LAGD+GFDP+GLG
Sbjct: 7 KTALAGTRVVAKSTSRSSARAGNVVVRAE-RSLWAPGVASPKYLDGNLAGDYGFDPMGLG 65
Query: 86 EDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF--KFASTR 143
+PE L WY QAEL +AR+AM GVAGIL ++ I WY AG E F +
Sbjct: 66 ANPERLTWYRQAELQNARWAMLGVAGILGQEI-----INPEQWWYSAGMPENLPSFDGNK 120
Query: 144 T----LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
+ + LLM F E +R+ D S + F + E GYPGGP +PL
Sbjct: 121 VNMGGILAWEFLLMHFVEVRRWQDIRKKDSVNADP--FNPNLKVPNPEMGYPGGP-FDPL 177
Query: 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
G +K N +E + KEIKNGRLAMVA + +QA T GP+ N+ +HL+ P+ +
Sbjct: 178 GFSKG--NFKEVQTKEIKNGRLAMVAFVAFTIQAQATGKGPLANLTDHLASPFSNNV 232
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 115/212 (54%), Gaps = 13/212 (6%)
Query: 59 WLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD 116
W PG P YLDG+L GD GFDPLGLG PE L W V AE+ H R AM G AGIL T
Sbjct: 50 WFPGNTAVVPDYLDGSLVGDNGFDPLGLGSSPEQLSWNVHAEVFHGRLAMTGCAGILLTS 109
Query: 117 LLRVTGIRELPVWYEAGAVEFK---FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK- 172
LL G ++P WYEAG V + S L ++L GFAE KR D +PGSQ
Sbjct: 110 LLHAGGA-DVPEWYEAGKVYMEKNPNVSFGALVYSTIVLSGFAEFKRLNDIRNPGSQGSG 168
Query: 173 --EGSFFGLEAALEGLEPG--YPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAML 227
F G+ +G G Y GG +P+GL + ++K EI+NGRLAM+ L
Sbjct: 169 ILPEDFKGV-GGPQGRTVGGPYVGGRFFDPMGLCRGSPEQTLKYKWNEIRNGRLAMIGFL 227
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
G Q T GPIDN+++H+SDP H I
Sbjct: 228 GFAAQYCATGKGPIDNLIDHVSDPTHVNFISN 259
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG E+ F T TLF
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLF 60
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDI 205
IV+L+ +G+AE +R+ D ++PG + F L G + GYPGG +PLG +
Sbjct: 61 IVELVFIGWAEGRRWADILNPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSASP 118
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
+ +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 119 QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 170
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 29/213 (13%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V A RPTWLPG++PP +L G LAGD GFDPLGLG+D L+WY +AE + R+AM V
Sbjct: 22 VAAASARPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL +LL VT P W+EAGA E+ + + L ++ ++MGF E KRY + G+
Sbjct: 82 AGILGQELLGVT-----PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQGFKQTGT 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
SF +P G+ N+ KE+KNGRLAMVA +G
Sbjct: 136 SGFINSF------------------PFDPAGM-----NSPSMATKEVKNGRLAMVAFIGF 172
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
VQA T PI+ + HL+DP+ K I L +
Sbjct: 173 CVQALATRTQPIEGLTAHLADPFGKNITYYLTH 205
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 119/199 (59%), Gaps = 19/199 (9%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+++ RFAM G AG + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
G +P YPGGP NPLG KD ++ +E KLKEIKNGRLAM+A+LG F+Q VT VGP
Sbjct: 118 FAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPF 177
Query: 242 DNILEHLSDPWHKTIIQTL 260
N+L+HL+DP ++ +L
Sbjct: 178 QNLLDHLADPVSNNVLTSL 196
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 29/213 (13%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V A RPTWLPG++PP +L G LAGD GFDPLGLG+D L+WY +AE + R+AM V
Sbjct: 22 VAAASARPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEGRLKWYAEAEKTNGRWAMMAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL +LL VT P W+EAGA E+ + + L ++ ++MGF E KRY + G+
Sbjct: 82 AGILGQELLGVT-----PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQGFKQTGT 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
SF +P G+ N+ KE+KNGRLAMVA +G
Sbjct: 136 SGFINSF------------------PFDPAGM-----NSPSMATKEVKNGRLAMVAFIGF 172
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
VQA T PI+ + HL+DP+ K I L +
Sbjct: 173 CVQALATRTQPIEGLTAHLADPFGKNITYYLTH 205
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 126/210 (60%), Gaps = 15/210 (7%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PGV P YL G LAGD+G+DPLGLG DP +LRWY Q+ELVHAR+AM GVAG+L ++
Sbjct: 35 WAPGVVAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEV- 93
Query: 119 RVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 173
++ +YEAG + F + L + +LM + E +R+ DY + GS ++
Sbjct: 94 ----VKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 149
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
F G + E GYPGG + +PLG +K N +E + KEIKNGRLAMVA +G +QA
Sbjct: 150 PIFKG--NKVPNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGFVLQA 204
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
T GP+ + HLS+P+ I++ +
Sbjct: 205 QATGKGPLAALSAHLSNPFGNNILKNIGTC 234
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
A+S + R A A RP W PG PPP+LDG+L GDFGFDPLGLG DPESLRW VQA
Sbjct: 40 AESSSARASFAVRAAAPDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQA 99
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAE 157
ELVH R+AM G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE
Sbjct: 100 ELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQQY-FTDTTTLFIIELILIGWAE 158
Query: 158 TKRYMDYISPGS 169
+R+ D I PG
Sbjct: 159 GRRWADIIKPGC 170
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 118/237 (49%), Gaps = 51/237 (21%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPE+L+W VQ+ELVH R+AM G AGI +LL GI
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN--------------------- 142
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DI 205
D I P ++ L G + GYPGG +PLG
Sbjct: 143 ---------------TDPIFPNNK------------LTGTDVGYPGGLWFDPLGWGSGSP 175
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+E + KEIKNGRLAM++++G + QA T GPIDN+L HL+DP H T+ ++
Sbjct: 176 EKIKELRTKEIKNGRLAMLSVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 232
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 118/199 (59%), Gaps = 19/199 (9%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+ + RFAM G G + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
G +P YPGGP NPLG KD ++ +E KLKEIKNGRLAM+A+LG F+Q VT VGP
Sbjct: 118 FAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPF 177
Query: 242 DNILEHLSDPWHKTIIQTL 260
N+L+HL+DP + ++ +L
Sbjct: 178 QNLLDHLADPVNNNVLTSL 196
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 136/239 (56%), Gaps = 31/239 (12%)
Query: 49 TVVRAQQRPT---WLPGVDPP--PYLDGTLAGDFGFDPLGLGEDPESL------RWYVQA 97
VV+AQ R +L GV YLDGTL GDFGFDPLG+ DPE +W +
Sbjct: 50 AVVKAQPRSKDDLYLMGVSDQNMAYLDGTLPGDFGFDPLGM-SDPEGAGGFVNPQWLAYS 108
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYEAGAV----EFKF-ASTRTLFI 147
E++H R+AM GVAGI+ ++L G+ +P VW+ +GA+ F + A+ T+F
Sbjct: 109 EVIHGRWAMLGVAGIVAPEILGQAGL--IPESTGLVWFTSGAIPPQGTFDYWANPMTIFW 166
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIR 206
V + +M FAE KR DY PGSQ ++ G E G P YPGG N GL KD
Sbjct: 167 VNMCMMNFAEIKRGQDYWYPGSQAEQ-PLMGWEKGFAGSGNPAYPGGKYFNFAGLGKD-- 223
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
+ + + KEIKNGRLAM+A LG VQA VT GP NI +H++DP+ + LAN G+
Sbjct: 224 DMAKMQKKEIKNGRLAMMAFLGCMVQAVVTGEGPWKNICDHVADPFGANM---LANFGA 279
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 125/215 (58%), Gaps = 26/215 (12%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GDFGFDPLG+ DPE +W +E++H R+AM GVAGI+ ++L
Sbjct: 81 YLDGTLPGDFGFDPLGM-SDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 122 GIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G+ +P VW+ +GA+ + +A+ T+F V + +M FAE KR DY PGSQ
Sbjct: 140 GV--IPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGSQA 197
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
E G E G P YPGG NP L KD + + KE+KNGRLAM+A LG
Sbjct: 198 -ETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKKEVKNGRLAMMAFLGCM 254
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
VQA+VT GP NI +H++DP+ + LAN G+
Sbjct: 255 VQAAVTGEGPWKNICDHVADPFGANM---LANFGA 286
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 19/199 (9%)
Query: 78 GFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELP 127
GFDPLGL DPE +W E+ + RFAM G G + ++ G+ LP
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 128 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
W++ G + +A TLF+ ++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 -WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKG 117
Query: 183 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
G +P YPGGP NPLG KD + +E KLKEIKNGRLAM+A+LG F+Q VT VGP
Sbjct: 118 FAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPF 177
Query: 242 DNILEHLSDPWHKTIIQTL 260
N+L+HL+DP + ++ +L
Sbjct: 178 QNLLDHLADPVNNNVLTSL 196
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 136/248 (54%), Gaps = 27/248 (10%)
Query: 37 PAKSGTTR-------RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE 89
PAK+ R + +A V R++ + YLDGTL GDFGFDPLGL +
Sbjct: 5 PAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLGLLDPVN 64
Query: 90 S-----LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYE------AG 133
S +W +E++HAR+AM G AG + ++L G+ +P W+E AG
Sbjct: 65 SGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAG 122
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPG 192
+ + +A T+F V+++ M FAE +R D+ PGS ++ F GLEA +G + YPG
Sbjct: 123 SYDGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPG 181
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
GP N L K +E KLKEIKNGRLAM+AMLG QA +T GP N++EHL+DP
Sbjct: 182 GPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPV 241
Query: 253 HKTIIQTL 260
+ I+
Sbjct: 242 NNNILTNF 249
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 20/211 (9%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPES-----LRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
YLDG+L GDFGFDPLGL + S +W +E++HAR+AM G AG + ++L G
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAG 115
Query: 123 IRELP-----VWYE------AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ +P W+E AG+ +A T+F V+++ M FAE +R D+ PGS
Sbjct: 116 L--IPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMG 173
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
++ F GLEA +G + YPGGP N L K +E KLKEIKNGRLAM+AMLG
Sbjct: 174 QQ-YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYG 232
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
QA +T GP N++EHL+DP + I+ A
Sbjct: 233 AQAVMTGKGPFQNLVEHLADPVNNNILTNFA 263
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 48 ATVVRA----QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
A +VRA +RP W PG PP +LDG+L GDFGFDPLGL DP+SL+W QAELVH R
Sbjct: 45 AALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCR 104
Query: 104 FAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 163
+AM G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D
Sbjct: 105 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWAD 163
Query: 164 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
I PGS + F L G + GYPGG +PL
Sbjct: 164 IIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPL 197
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 123/214 (57%), Gaps = 23/214 (10%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE-----------SLRWYVQAELVHARFAMAGVAGILFTD 116
YLDGTL GD+GFDPLGL DP + RW +E++HAR+AM G AG + +
Sbjct: 69 YLDGTLPGDYGFDPLGL-LDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 117 LLRVTGI--RELPV-WYEAGAVE----FK--FASTRTLFIVQLLLMGFAETKRYMDYISP 167
+L G+ E V W+ G + +K +A TLF ++++ + FAE KR DY +P
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFIEVVAIQFAELKRLQDYKNP 187
Query: 168 GSQTKEGSFFGLEAALEGLE-PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
GSQ+++ F GLE +G + P YPGGP N K ++ KL EIKNGRLAM+AM
Sbjct: 188 GSQSRQ-YFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKNGRLAMLAM 246
Query: 227 LGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
G QA +T GP DN+L HL+DP +I L
Sbjct: 247 FGYGAQAVITGDGPFDNLLAHLADPTGANLITNL 280
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 135/248 (54%), Gaps = 27/248 (10%)
Query: 37 PAKSGTTR-------RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE 89
PAK+ R + +A V R++ + YLDG+L GDFGFDPLGL +
Sbjct: 18 PAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDFGFDPLGLLDPVN 77
Query: 90 S-----LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP-----VWYE------AG 133
S +W +E++HAR+AM G AG + ++L G+ +P W+E AG
Sbjct: 78 SGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAG 135
Query: 134 AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPG 192
+ +A T+F V+++ M FAE +R D+ PGS ++ F GLEA +G + YPG
Sbjct: 136 SYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPG 194
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
GP N L K +E KLKEIKNGRLAM+AMLG QA +T GP N++EHL+DP
Sbjct: 195 GPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPV 254
Query: 253 HKTIIQTL 260
+ I+
Sbjct: 255 NNNILTNF 262
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 131/232 (56%), Gaps = 15/232 (6%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA S + R V A R W PGV P YL G LAGD+G+DPLGLG DP +L+WY Q
Sbjct: 13 PACSTRSSRRAVVVRAAADRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQ 72
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLL 151
+EL HAR+AM GVAG+L ++ ++ +YEAG + F + L + +
Sbjct: 73 SELQHARWAMLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFI 127
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
LM + E +R+ DY + GS ++ F G + E GYPGG + +P G +K N +E
Sbjct: 128 LMHWVEVRRWQDYKNFGSVNEDPIFKG--NKVPNPEMGYPGG-IFDPFGFSKG--NLKEL 182
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
+ KEIKNGRLAM+A + +QA T GP+ + HLS+P+ I++ +
Sbjct: 183 QTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNIGTC 234
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 132/231 (57%), Gaps = 14/231 (6%)
Query: 38 AKSGTTRR--YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
A++G R + + +Q R W PGV+ P YL+G LAGD+G+DPLGLG PE+L+WY
Sbjct: 24 ARAGPAPRSTFQVSAAASQGRRLWAPGVEAPSYLNGELAGDYGWDPLGLGAKPEALKWYR 83
Query: 96 QAELVHARFAMAGVAGILFTDLLR------VTGIRELPVWYEAGAVEFKFASTRTLFIVQ 149
QAELVHAR+AM VAGIL ++++ G+ E G E K + L +
Sbjct: 84 QAELVHARWAMLAVAGILAQEIVKPGVFFYNAGLPENLPGINFGGPEGK-VNLGGLLAWE 142
Query: 150 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 209
LL + E +R+ D S ++ F G + + E GYPGG + +P G +K N +
Sbjct: 143 FLLFHWVEVRRWQDIKKKDSVNQDPIFKGNK--VPNPELGYPGG-IFDPFGFSKG--NFK 197
Query: 210 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E + KEIKNGRLAMVA +G +QA T GP+ N+ HL++P+ I + +
Sbjct: 198 EVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLANLGAHLANPFGNNITKNI 248
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 116/213 (54%), Gaps = 29/213 (13%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V + R WL G P +LDG+LAGDFGFDPLGLG +P+ L+WYV+AE + R+AM V
Sbjct: 3 VNASSDRQMWLVGAAAPEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMMAV 62
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGIL +LL VT P W+EAGA ++ L ++ +++GF ETKRY + + GS
Sbjct: 63 AGILGQELLGVT-----PKWFEAGAKDYGI-PFFPLLAMEAIILGFLETKRYQGFKTTGS 116
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
LN N+ + +LKEIKNGRLAM+A +G
Sbjct: 117 SG-----------------------FLNSFPFDPANMNSPDMQLKEIKNGRLAMIAFVGF 153
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
VQA VT GPI+ + H+ DP+ I + N
Sbjct: 154 SVQALVTREGPIEGLFNHIGDPFGHNITANVMN 186
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 39 KSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
K+ RR TV +A Q RP W PG PPP+LDG+L GDFGFDPLGLG DPE+L+W VQ
Sbjct: 1 KAAMPRRAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQ 60
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AELVH R+AM G AGI +LL GI P WY AG +E+ F TLF+V+++ +G+A
Sbjct: 61 AELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDKTTLFVVEMIFLGWA 119
Query: 157 ETKRYMDYISPGS 169
E +R+ D + PGS
Sbjct: 120 EGRRWADILKPGS 132
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 127/236 (53%), Gaps = 30/236 (12%)
Query: 30 GITSA-FLPAKSGTTRRYLA--TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
G+++A L A G + A VRA R WLP PP +L+GTL GD+G+DP+GL
Sbjct: 10 GVSAAPLLKASFGVKKATAARDVTVRAADRTLWLPNTVPPAHLNGTLPGDYGYDPIGLAT 69
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DP+ L W+V+AE + R+AMAGVAGILFTD L + W+ GA L
Sbjct: 70 DPDRLAWFVEAERTNGRWAMAGVAGILFTDALHIGSAP----WFSIGAELESPIPLWGLA 125
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
++ ++ GF E KR + G GL +P +PLG+
Sbjct: 126 TIEFVIFGFLEMKRLEGWKKTGQN--------------GLLNWFP----FDPLGM----- 162
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
N++E +KE+KNGRLAM A G VQA VT GP+ N+ +H++DP++ I ++AN
Sbjct: 163 NSKEMMVKEVKNGRLAMFAWCGFMVQALVTREGPVTNLEKHIADPFNNNFITSIAN 218
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 119/212 (56%), Gaps = 30/212 (14%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARF 104
R A V A RP W PG P +LDGT+ GD+GFDPL LG +PE L+W+ +AEL + R+
Sbjct: 18 RATAVRVSASTRPMWYPGATAPKHLDGTMLGDYGFDPLRLGTNPEQLKWFREAELTNGRW 77
Query: 105 AMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
AMA VAGILFTDL+ LP ++ AGA ++ T TL ++++ + E KRY Y
Sbjct: 78 AMAAVAGILFTDLV------GLPKFWLAGAEKYAL-DTPTLALIEVAVFAVLEGKRYDIY 130
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
+T E F +PLG+ + E KLKE+KNGRLAM+
Sbjct: 131 ----KKTGETGFLSFAP--------------FDPLGM-----KSEEMKLKELKNGRLAML 167
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
A +G QA+V GPI+ + +H++DP H I
Sbjct: 168 AFVGFCSQAAVRGKGPIECLTDHIADPGHVNI 199
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 117/198 (59%), Gaps = 14/198 (7%)
Query: 66 PPYLDGT-LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI- 123
P +L G LAG+FGFDPL LG+D +L+WY QAEL + R+AM GVAGIL +LL TG+
Sbjct: 6 PAHLKGKDLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLG 65
Query: 124 -RELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
+ V W++AG F +A TL + LL +AE R DY PGS + FG
Sbjct: 66 GKAADVYWFDAGNNTF-WAPKETLIAISFLLFAWAECNRAQDYFKPGSNVSDP--FG--N 120
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
+++ +E GYPG +PL K+ + WKLKEIKNGRLAM+A LG Q + P+
Sbjct: 121 SIKYVELGYPG---FDPLSFTKN--DYAGWKLKEIKNGRLAMLAFLGFVAQHNAQPGSPL 175
Query: 242 DNILEHLSDPWHKTIIQT 259
D + +HLS+PW +
Sbjct: 176 DQLADHLSNPWKNHFVNN 193
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 127/226 (56%), Gaps = 34/226 (15%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE--------SLRWYVQAELVHARFAMAGVAGILFTDLLR 119
YL G+L GDFG+DPL L + + S+ W AE++H R+AM G AG L ++L
Sbjct: 128 YLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVLG 187
Query: 120 VTGIRELP-----VWYEAGAVE---------------FKFASTR-TLFIVQLLLMGFAET 158
G+ +P W++AG ++ F++ + + TL L+ MGFAET
Sbjct: 188 KAGV--IPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAET 245
Query: 159 KRYMDYISPGSQTKEGSFFGLEA-ALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEI 216
+R+ +Y PGS K+ F GLE +P YPGG N GL AKD + E K+KEI
Sbjct: 246 RRWQEYKEPGSVQKQ-FFLGLEKLTPPSQQPAYPGGGFFNFAGLGAKDEKQMFELKVKEI 304
Query: 217 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
+NGRLAM+A LG VQA VTHVGP N+L+H++ P + ++ L N
Sbjct: 305 RNGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRLTN 350
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 131/232 (56%), Gaps = 15/232 (6%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA S + R V A R W PGV P YL G LAGD+G+DPLGLG DP +L+WY Q
Sbjct: 1 PACSTRSSRRAVVVRAAADRKLWAPGVVAPEYLKGELAGDYGWDPLGLGADPTALKWYRQ 60
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLL 151
+EL HAR+AM GVAG+L ++ ++ +YEAG + F + L + +
Sbjct: 61 SELQHARWAMLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFI 115
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
LM + E +R+ DY + GS ++ F G + E GYPGG + +P G +K + +E
Sbjct: 116 LMHWVEVRRWQDYKNFGSVNEDPIFKG--NKVPNPEMGYPGG-IFDPFGFSKG--DFKEL 170
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
+ KEIKNGRLAM+A + +QA T GP+ + HLS+P+ I++ +
Sbjct: 171 QTKEIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNIGTC 222
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 121/207 (58%), Gaps = 23/207 (11%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDGTL GDFGFDPLG+ DPE +W +E++H R+AM GVAG++ ++L
Sbjct: 97 YLDGTLPGDFGFDPLGM-SDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGM 155
Query: 122 GIRELP-----VWYEAGAV----EFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
GI +P VW+++GA+ F + A T+F V ++LM FAE KR DY PGSQ
Sbjct: 156 GI--IPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNMVLMNFAEVKRGQDYWYPGSQ- 212
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
E G E G P YPGG N L K + + + KEIKNGRLAM+A LGI
Sbjct: 213 GETPLMGWEKGFAGSGAPAYPGGKYFNFANLGK--TDMAKMQKKEIKNGRLAMMAFLGIA 270
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTII 257
VQA T GP NI++H+SDP+ ++
Sbjct: 271 VQAVATGEGPFKNIVDHISDPFANNML 297
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 120/238 (50%), Gaps = 31/238 (13%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA + ++RPTW PG + P +L G GD GFDPLGL +DPE
Sbjct: 341 PAHNNLLNTVAMFAASGEKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRD 400
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-------------FKFASTR 143
+E+ H R+AM G+ G L ++ GI +LP WYEAGAV ++
Sbjct: 401 SEVYHGRWAMLGLVGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVP 460
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
+F LLL E R+ I+P +++ E + YPGGP +PL L
Sbjct: 461 LIFFTTLLLFLPIEAWRWNGQIAPEAKSAERT-------------TYPGGP-FDPLKLGA 506
Query: 204 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
+ E KLKEIKNGRLAMV M G + Q+ VT GP+ N+ HL+DP H ++ T+A
Sbjct: 507 ----SPELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 560
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 118/238 (49%), Gaps = 31/238 (13%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
PA + ++RPTW PG + P +L G GD GFDP GL +DP +
Sbjct: 132 PAHNNLLNTVAMFAASGEKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRD 191
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAV------------EFKFASTRT 144
+E+ H R+AM G+ G L ++ GI +LP WY+A V AS +
Sbjct: 192 SEVFHGRWAMLGLVGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVS 251
Query: 145 LFIVQ-LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 203
+ LLLMG E R+ ++ +++ E + YPGGP +PL L
Sbjct: 252 FIALSTLLLMGPVEAWRWNGALASEAKSAERT-------------TYPGGP-FDPLKLGA 297
Query: 204 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
+ E KLKEIKNGRLAMV M G + Q+ VT GP+ N+ HL+DP H ++ T+A
Sbjct: 298 ----SPELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 351
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 31/153 (20%)
Query: 122 GIRELPVWYEAGAVE-------------FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
GI +LP WYEAGAV ++ +F LLL E R+ I+P
Sbjct: 8 GIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPD 67
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+++KE + YPGGP +PL L + E KLKEIKNGRLAMV M G
Sbjct: 68 AKSKEWT-------------TYPGGPF-DPLKLGA----SPELKLKEIKNGRLAMVGMFG 109
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
+ Q+ VT GP+ N+ HL+DP H ++ T+A
Sbjct: 110 FWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 142
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 88/136 (64%), Gaps = 3/136 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM G AGI
Sbjct: 54 NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I PGS +
Sbjct: 114 PEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDP 172
Query: 175 SFFGLEAALEGLEPGY 190
F L G + GY
Sbjct: 173 IF--PSNKLTGTDVGY 186
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 123/212 (58%), Gaps = 15/212 (7%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGT-LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
VVRA R WLPG D P +L+ + L G+FGFDPLGLG +PE L W+ ++E VH R+AM
Sbjct: 30 VVVRAAARANWLPGNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESERVHCRWAML 89
Query: 108 GVAGILFTDLLRVTGIRELPVWYEAGA-VEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
GVAGIL +L+R WY + VE F T L +L +M + E++R D +
Sbjct: 90 GVAGILVQELVRPDVF-----WYTSAVDVELPFDIT-GLVAFELFVMHWVESRRGYDIKN 143
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
PGS ++ F + L EPGYPGG + P + E K+KEIKNGRLAM+A
Sbjct: 144 PGSMDQDPIFSNFK--LPSHEPGYPGG-IFAPFVPG----SMEELKVKEIKNGRLAMLAF 196
Query: 227 LGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
+G + A ++ + P+ + EHLSDP + TI
Sbjct: 197 IGFTMAAQISGLNPLAALGEHLSDPLNTTIFS 228
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PPP+LDG+L GDFGFDP GLG DPESLRW VQAELVH R+AM G AGI
Sbjct: 54 NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI 113
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
+ L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I PGS +
Sbjct: 114 PEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADIIKPGSVNTDP 172
Query: 175 SF 176
F
Sbjct: 173 IF 174
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 121/210 (57%), Gaps = 18/210 (8%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLR------WYVQAELVHARFAMAGVAGILFTDLLR-V 120
YLDGTL GD+GFDPLGL DPE W AE++H R+AM GVAG + ++
Sbjct: 77 YLDGTLPGDYGFDPLGL-SDPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETMKGF 135
Query: 121 TGIRELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
VW++ G + + +A LF V + +M F E R +Y +PG +TK+ S
Sbjct: 136 IPDSTAVVWFKNGIIPAQGSYDFWAPPTALFWVMVCMMNFVEINRLTEYANPGFRTKQ-S 194
Query: 176 FFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
GLE + G P YPGG NP+G+ K+ +A K+KEIKNGRLAM+A GI VQA
Sbjct: 195 LAGLEKGMGGTGNPAYPGGSF-NPMGMGKNDMDAM--KVKEIKNGRLAMMAFFGIMVQAI 251
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
+T GP+ N+ +H++DP+ ++ AN G
Sbjct: 252 ITGEGPVKNLTDHVTDPFAHNLLTNFANVG 281
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 127/230 (55%), Gaps = 31/230 (13%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLP-GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
PAK+ + R + V+A R WL P +LDGTL GDFGFDPLGLG DPE L++Y
Sbjct: 32 PAKAPVSAR-ASLKVQAANRELWLKDSTVAPAHLDGTLPGDFGFDPLGLGADPERLKYYQ 90
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGF 155
+AEL++AR+AM VAGI T++L + G WYEAGA E+ L VQ +MG
Sbjct: 91 EAELMNARWAMMAVAGICTTEILGIGG-----PWYEAGAAEYDL-PINALLAVQFPVMGI 144
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E +R +++ G G+ +P +P+G+ N + LKE
Sbjct: 145 LELRRIRGWLATGKS--------------GVNETFP----WDPMGM-----NGDQMALKE 181
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
+KNGRLAM+A +GI VQA V GP+ + +H++DP+ + + + GS
Sbjct: 182 VKNGRLAMIAFVGIVVQAIVYRTGPVAALKDHITDPFGCNMATNIMHIGS 231
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 5/157 (3%)
Query: 39 KSGTTRRYLATVVR--AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
++G T+ ++ V RP W PG PPP+LDG+L GDFGFDPLGLG DPE LRW+ Q
Sbjct: 5 RAGATKGGVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQ 64
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFA 156
AEL+H+R+AM VAGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+A
Sbjct: 65 AELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWA 123
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193
E +R+ DY++PG E + + GYPGG
Sbjct: 124 EGRRWADYLNPGCVAVEPRLPNRRNPVPDV--GYPGG 158
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 30/215 (13%)
Query: 47 LATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
++TVVRA W G PP YLDG++ GD+G+DPL +G +PE L+WY Q E+ + R+AM
Sbjct: 37 VSTVVRADLGKKWYTGAKPPAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAM 96
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDY 164
GVAG+LFTD L GI +LP WYEAGAV + +TL +++ + E R +
Sbjct: 97 IGVAGMLFTDALTQFGISDLPDWYEAGAVAQASSPFDLQTLIAIEIFVFATVEGFRISTW 156
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
G +PG+ L+ +G+ ++ + +LKEIKNGRLAM
Sbjct: 157 KKTG------------------KPGF-----LDIMGM-----DSPDMRLKEIKNGRLAMF 188
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
A +G Q V +GP++ +L HL +P + T
Sbjct: 189 AFVGFVAQYFVNGMGPVEGLLNHLENPQQNNVFST 223
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 121/214 (56%), Gaps = 32/214 (14%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLG-EDPESLRWYVQAELVHARFAM 106
++VV A RPTW PG PP +LDG++ GD+GFDPL LG +D + L++Y + EL + R+AM
Sbjct: 24 SSVVVAAARPTWYPGATPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYREGELTNGRWAM 83
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGA-VEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
A VAGILFTDL+ L W+EAGA VE F +TL IV+++ E R Y
Sbjct: 84 AAVAGILFTDLV------GLGPWWEAGAKVESSF-DLKTLIIVEIVTFAILEGFRAKAYE 136
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
G GL P P +PL + D E +LKE+KNGRLAM+A
Sbjct: 137 KTGET--------------GLGPFAP----FDPLNMRSD-----ETRLKELKNGRLAMLA 173
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
+LG QA+V GPI+ + HL+DP H I +
Sbjct: 174 ILGFSSQAAVQGKGPIECLQAHLADPGHNNIFTS 207
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 3/145 (2%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILF 114
RP W PG PP +LDG+L GDFGFDPLGLG DPE L+W QAEL+HAR+AM GV+GIL
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILI 120
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D ++PGS E
Sbjct: 121 PEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEP 179
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPL 199
+ GYPGG +P+
Sbjct: 180 KLPNRPNPKPDV--GYPGGLWFDPM 202
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 125/241 (51%), Gaps = 33/241 (13%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+C ++ A R L V AQ + +W+P V P +LD
Sbjct: 14 SSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLD 73
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+
Sbjct: 74 GSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP----WF 127
Query: 131 EAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEA 181
EAGA F F S L QL+LMG+ E+KR++D+ +P SQ+ E S
Sbjct: 128 EAGADPGAIAPFSFGS---LLGTQLILMGWVESKRWVDFFNPESQSVEWATPWSKTAENF 184
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAMVAMLGIFVQ 232
A + GYPGG +PLG A ++N KL EIK+ RLAM+AML + +
Sbjct: 185 ANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHARLAMIAMLIFYFE 244
Query: 233 A 233
A
Sbjct: 245 A 245
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 8/155 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
E GYPGG + NPL A + E K KE+ NGR
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 31/225 (13%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
S G+ S A RR+ VRA WLPG PPPYLDGT+AGD+GFDPL LG
Sbjct: 8 SFFGLNSVRSSATKKIARRHHGFAVRAGTH--WLPGTQPPPYLDGTMAGDYGFDPLRLGA 65
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
+P++L + +AEL++ R+AM AGILFTD + LP W+EAG + +TL
Sbjct: 66 NPDTLPYLQEAELMNGRWAMHATAGILFTDAV------GLPKWWEAGEAALGDWNLQTLV 119
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
Q+++M F E R +++ G G+F P P G +
Sbjct: 120 AFQVVIMAFLEAARIRGFMTTGQSGVIGNF-----------PFDPTG------------Q 156
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
++ E ++KE+KNGRLAM++ LG+ Q +VT P++ + H+++P
Sbjct: 157 DSPEMRVKEVKNGRLAMMSFLGMVSQYAVTGTSPLEGLKAHMANP 201
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 130/258 (50%), Gaps = 50/258 (19%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPE 89
S+ A +G R+ + + RP WL + + P YL G L GD+GFD GLG+DP
Sbjct: 88 NSSTFKALAGKARK--ESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPV 145
Query: 90 SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK--------- 138
+L+ Y E++HAR+AM G L ++L + G PVW+ G + K
Sbjct: 146 ALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGI 205
Query: 139 ----FASTR---TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP--- 188
FA ++ + I Q LLM E RY +E LEP
Sbjct: 206 QGLHFAGSQGVVVIAICQALLMVGPEYARY-------------------CGIEALEPLGI 246
Query: 189 ------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
YPGG L +PL L+ D E K+KEIKNGRLAMVA LG +VQA++T GP+
Sbjct: 247 YLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQ 306
Query: 243 NILEHLSDPWHKTIIQTL 260
N+++H+SDP+H ++ +L
Sbjct: 307 NLIDHISDPFHNNLLGSL 324
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 8/155 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
E GYPGG + NPL A + E K KE+ NGR
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 31/218 (14%)
Query: 40 SGTTRRYLATV-VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
+G +R ATV V A RP W PG P +LDG++ GD+GFDPL LG + ++L+W+ +AE
Sbjct: 11 AGVSRPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDNLKWFREAE 70
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
L + R+AMA V GILFTD + LP ++ AGA ++ +TL ++++ + E
Sbjct: 71 LTNGRWAMAAVVGILFTDAV------GLPKFWTAGAEKYAL-DNQTLALIEVAVFAVLEG 123
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
KRY Y G E G+ +P+G+ + E KLKE+KN
Sbjct: 124 KRYEIYKKTG------------------ETGFLSFAPFDPMGM-----KSEEMKLKELKN 160
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
GRLAM+A LG QA+V GPI+ + HL+DP H I
Sbjct: 161 GRLAMLAFLGFCSQAAVYGKGPIETLQLHLADPGHNNI 198
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 132/242 (54%), Gaps = 35/242 (14%)
Query: 17 SSFICN-DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYL 69
SSF+C N++ +GI ++ + TR+ L V AQ + +W+P V P +L
Sbjct: 14 SSFLCGGKRNQALLGIGASRTGSFPVGTRK-LVVVAAAQPKKSWIPAVKGGGSLVDPEWL 72
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 73 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 126
Query: 130 YEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLE 180
+EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E S
Sbjct: 127 FEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTAEN 183
Query: 181 AALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGRLAMVAMLGIFV 231
A + GYPGG +PLG A D+ K+ EIK+ RLAMVAML +
Sbjct: 184 FANATGDQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHARLAMVAMLIFYF 243
Query: 232 QA 233
+A
Sbjct: 244 EA 245
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 102/155 (65%), Gaps = 8/155 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG +G F + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGC-VNQGPIFK-QYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
E GYPGG + NPL A + E K KE+ NGR
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 126/248 (50%), Gaps = 39/248 (15%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVV-----------RAQQRPTWLPGVDPPPYLDGTLAGD 76
S GI + P+ +++ A V R W+PG PPYLDG+ GD
Sbjct: 8 SCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGD 67
Query: 77 FGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGA 134
FGFDPLGLGE PE+L + ++EL+H R+AM V GIL + L + + W G
Sbjct: 68 FGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQ 127
Query: 135 VEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
+ + + T+ +++ L + F E +R M+ + K+
Sbjct: 128 ATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEK---DPEKKK---------------- 168
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHL 248
YPGG +PLG +KD +E+K+KEIKNGRLA++A +G VQ S GP++N+ HL
Sbjct: 169 YPGG-AFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 227
Query: 249 SDPWHKTI 256
+DPWH I
Sbjct: 228 ADPWHNNI 235
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 128/253 (50%), Gaps = 35/253 (13%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATV-VRAQQRPTWL-PGVDPPPYLDGTL 73
+S+ +CN +S+ SA A G + A + R T+L P D P YL+G
Sbjct: 2 ASALLCNSFAGASL--RSAVPTAGKGNRQVTRAAIEFYGPDRATFLGPFTDTPSYLNGEF 59
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEA 132
GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL G+ VW++A
Sbjct: 60 PGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKA 119
Query: 133 GAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
GA F S Q++LMG AE R G
Sbjct: 120 GAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAA---------------G 164
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
LEGL+ YPGGP +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 165 EGPGLEGLDSLYPGGPF-DPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGK 223
Query: 239 GPIDNILEHLSDP 251
GPI+N+ +HL+DP
Sbjct: 224 GPIENLSDHLADP 236
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 135/277 (48%), Gaps = 55/277 (19%)
Query: 1 MAVAVGRGFLLQP-------SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRA 53
MA AVG ++ P SS+ S + N S+G+ + R
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNG----------------SRV 44
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
W+PG PP+LDG+ GDFGFDPL LG PE+L Y ++EL+H R+AM V G+L
Sbjct: 45 SMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVL 104
Query: 114 FTDLLRVTGIRELPVW---------YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
+ L + E W Y V + + + V+ L + F E++R +
Sbjct: 105 IPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLP--VILAVEFLSIAFVESQRNGE- 161
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
P + ++ YPGG +PLG +KD +E+K+KEIKNGRLA++
Sbjct: 162 --PDPEKRK----------------YPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALL 202
Query: 225 AMLGIFVQASVTH-VGPIDNILEHLSDPWHKTIIQTL 260
A +G VQAS GP++N+ HLSDPWHK I + +
Sbjct: 203 AFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEII 239
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 13/180 (7%)
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFAST 142
RW E+ + R AM GV G++ +LL G+ +P W++ G + +A
Sbjct: 11 RWLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADP 69
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGL 201
TLF+ +L L+GFAE +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG
Sbjct: 70 YTLFVFELALVGFAEHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGF 128
Query: 202 A-KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
K +E KLKEIKNGRLAM+A LG VQA T VGP+ N+L+HL+DP H I+ +L
Sbjct: 129 GTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 188
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 122/229 (53%), Gaps = 36/229 (15%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP+ +GT+R ++ WLPG PPYLDG+ GDFGFDPL LGE PE+L Y
Sbjct: 33 LPSVNGTSRVTMSA--------DWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 84
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-------ASTRTLFIV 148
++EL+H R+AM V GIL + L + + W A + + + T+ +
Sbjct: 85 ESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAI 144
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
+ + + F E +R M+ + K+ YPGG +PLG +KD +
Sbjct: 145 EFVAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGFSKDPKKF 184
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
E+K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 185 EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 118/216 (54%), Gaps = 30/216 (13%)
Query: 51 VRAQQRPTWL-PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V+A R WL PP+LDGTL GDFGFDPLGLG DP L++Y +AEL+++R+AM V
Sbjct: 45 VKAAGRDLWLRDSAVAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAV 104
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGI TD L + G WYEAGA ++ F L VQ +MG E KR +++ G
Sbjct: 105 AGITTTDALNIGG-----PWYEAGAGDYDF-PIPALLAVQFPVMGILELKRIRGWLATGK 158
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G+ +P +P+G+ D +KEIKNGRLAM+A +G+
Sbjct: 159 S--------------GVNSDFP----WDPMGMNND-----AMAVKEIKNGRLAMIAFVGV 195
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
VQA V GP+ + +H+ DP+ + + + GS
Sbjct: 196 VVQAIVYRTGPVAALKDHVVDPFGCNMATNIMHIGS 231
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 122/236 (51%), Gaps = 48/236 (20%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + P YL G L GD+GFD GL EDP + + Y E++HAR+AM G
Sbjct: 119 EERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALG 178
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTRTLFIV---QLLLM 153
L ++L ++G PVW+ G + K FA + + ++ Q +LM
Sbjct: 179 ALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILM 238
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L+KD
Sbjct: 239 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGILFDPLNLSKD 279
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ E K+KEIKNGRLAMVA LG ++QA++T GP++N++EH+SDP H + TL
Sbjct: 280 PVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNLFSTL 335
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 135/277 (48%), Gaps = 55/277 (19%)
Query: 1 MAVAVGRGFLLQP-------SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRA 53
MA AVG ++ P SS+ S + N S+G+ + R
Sbjct: 1 MATAVGCSHVVAPVVFAGAFSSAKSRFFSPTNSLSLGVCNG----------------SRV 44
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
W+PG PP+LDG+ GDFGFDPL LG PE+L Y ++EL+H R+AM V G+L
Sbjct: 45 SMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVL 104
Query: 114 FTDLLRVTGIRELPVW---------YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
+ L + E W Y V + + + V+ L + F E++R +
Sbjct: 105 IPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLP--VILAVEFLSIAFVESQRNGE- 161
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
P + ++ YPGG +PLG +KD +E+K+KEIKNGRLA++
Sbjct: 162 --PDPEKRK----------------YPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALL 202
Query: 225 AMLGIFVQASVTH-VGPIDNILEHLSDPWHKTIIQTL 260
A +G VQAS GP++N+ HLSDPWHK I + +
Sbjct: 203 AFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEII 239
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 124/214 (57%), Gaps = 24/214 (11%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W +E++H R+AM GVAG++ ++L
Sbjct: 70 YLDGSLPGDYGFDPLGL-SDPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGGL 128
Query: 122 GIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
GI +P VWY+AG + + +A+ T+F + LM FAE +R DY +PGS
Sbjct: 129 GI--IPQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNFAELRRAQDYWNPGSMG 186
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
K+ G E L G EP YPGG N +G K + + ++KEIKNGRLAM+A
Sbjct: 187 KQ-ELIGWEKMLGGSGEPAYPGG-FFNIMGQGKS--DMAKMRVKEIKNGRLAMMACFACG 242
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
QA +T GP+ N+++H+SDP+ ++ N G
Sbjct: 243 AQAVMTGEGPVKNLIDHVSDPFGHNLLVNFQNIG 276
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 22/213 (10%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPE-------SLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
YL G L D+GFDPLGL DPE S W +E++HAR+AM G AG + ++L
Sbjct: 35 YLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILAT 93
Query: 121 TG-IRELP---VWYEAGAV------EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
G I + P +W+++G + + + +LF ++++L+ FAE +R+ D+ +PGSQ
Sbjct: 94 AGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPYSLFFIEVILVQFAELRRWQDFRNPGSQ 153
Query: 171 TKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
K+ F GLE L+G +P YPGG N L K + +E K KE+KNGRLAM+A+ G
Sbjct: 154 GKQ-YFLGLEEVLKGSGDPSYPGGQFFNLFNLGK--SDLKELKTKELKNGRLAMLAVFGY 210
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
QA +T GP N+ +HLSDP I+ +
Sbjct: 211 GAQAVITAEGPFKNLTDHLSDPTGHNILTNFGH 243
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G+L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
+P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PG ++ + +L
Sbjct: 62 VPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIL--KQYSLAP 118
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
E GYPGG + NPL A + E K KE+ NGR
Sbjct: 119 HECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 120/226 (53%), Gaps = 37/226 (16%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP +L G+ +PP YL+G GD+G+D GL DPE+ + Y Q EL+HAR+A+ G G
Sbjct: 44 NRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGC 103
Query: 113 LFTDLLRVTGIRELP---VWYEAGAVEFKFASTRTL--------------FIVQLLLMGF 155
+ +LL G+ +P VW++ GA FK L +VQL+LMG+
Sbjct: 104 VVPELLARNGV-AMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGW 162
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R G G EGL+P YPGG +PLGLA D E K+KE
Sbjct: 163 AEGYRI-----------NGGPLG-----EGLDPLYPGGAF-DPLGLADDPDTLAELKVKE 205
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
+KNGR+AM AM G VQA VT GP++N+ +HL+ P + A
Sbjct: 206 LKNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAAPGTNNVFSNAA 251
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 138/278 (49%), Gaps = 57/278 (20%)
Query: 24 VNKSSIGIT-----SAFLPAKSGTTRRYLATVVRAQQRPTW-------LPG-VDPPPYLD 70
++KSS+G A LP + A A+++ W LPG + +L
Sbjct: 137 LSKSSVGKQVQEQLEAKLPELQAEADKTRAAHAEARRQSKWYGPSRPRLPGPLGSAEHLI 196
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVW 129
G +AGD GFDPLGL ++ S Y +AEL+HAR+AM GV G L +LL + G+ PVW
Sbjct: 197 GAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLGEPVW 256
Query: 130 YEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRYMDYIS------ 166
++ GA + F+ A + + ++ Q +LMG E RY+ S
Sbjct: 257 WKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVGV 316
Query: 167 --PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
PG Q YPGG +PL A D E +KE+KNGRLAM+
Sbjct: 317 FLPGDQN------------------YPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAML 358
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
AMLG FVQA+VT VGP+ N+L+ ++DP H I LA+
Sbjct: 359 AMLGFFVQAAVTRVGPVQNVLDFVADPAHNNIFWNLAH 396
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 113/224 (50%), Gaps = 46/224 (20%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P +LDG GD+GFD GLG DP + Y E++H R+AM G G++ +LL + GI
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 124 REL--PVWYEAGAVEFKFASTRTL----------------FIVQLLLMGFAETKRYMDYI 165
PVW++ G + + + L I Q LLM E RY
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARY---- 116
Query: 166 SPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEI 216
+E LEP YPGG L +PLGL+KD E K+KEI
Sbjct: 117 ---------------CGIEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEI 161
Query: 217 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KNGRLAMVA LG +VQA+VT GP+ N++EHLSDP H I+ +
Sbjct: 162 KNGRLAMVAWLGFYVQAAVTGKGPVQNLIEHLSDPLHNNILSSF 205
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 116/203 (57%), Gaps = 27/203 (13%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
LP + P YLDGT+AGD+GFDPLGLG DPE L++Y +AEL++AR+AM VAGI T+ L
Sbjct: 50 LPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEAL- 108
Query: 120 VTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
GI+ WY AG ++ F L ++ MGF ETKR +++ G
Sbjct: 109 --GIQS--KWYMAGQEDYGFPINAQLAVL-FPTMGFLETKRITGWLATGKS--------- 154
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
G+ +P +PLG+ D + KLKEIKNGR AM+A +GI VQA V G
Sbjct: 155 -----GINETFP----FDPLGMGAD---SDSMKLKEIKNGRAAMIAFVGICVQALVLREG 202
Query: 240 PIDNILEHLSDPWHKTIIQTLAN 262
P+ + +H+++P+ + + N
Sbjct: 203 PLAALQDHVANPFGNNLATNVMN 225
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 12/167 (7%)
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTR 143
W E+++ RFAM G AG + ++L G+ LP W++ G + +A
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNY 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA 202
TLF++++ LMGFAE +R D+ +PGS K+ F GLE L G P YPGGP NPLG
Sbjct: 60 TLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFG 118
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+
Sbjct: 119 KDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 125/251 (49%), Gaps = 48/251 (19%)
Query: 39 KSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
+S + A+ +RP WL V + P +L G GD+GFD GLG DP + Y
Sbjct: 89 RSAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFN 148
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFAS 141
E++H R+AM G++ +LL + G+ PVW++ G + F+ A
Sbjct: 149 FEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAG 208
Query: 142 TRTLFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------G 189
+ + ++ Q LLM E RY +E LEP
Sbjct: 209 GQGVIVIAICQALLMVGPEYARY-------------------CGIEALEPLGLYLPGDIN 249
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
YPGG L +PLGL+KD + K+KEIKNGRLAMVA LG ++QA+VT GPI N++EHLS
Sbjct: 250 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLS 309
Query: 250 DPWHKTIIQTL 260
DP H I+ +
Sbjct: 310 DPLHNNILSSF 320
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 130/250 (52%), Gaps = 34/250 (13%)
Query: 5 VGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD 64
+G FL S + + + +G+ + G+ +R + + + +W+PGV
Sbjct: 13 LGSSFLSGGKRSQTLLATTAIGAKVGVAA-------GSPKRLIVAAAASAPKKSWIPGVR 65
Query: 65 ------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 66 FGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 125
Query: 119 RVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE--- 173
+G+ W+EAGA A S TL QL+LMG+ E+KR++D+ +P SQ+ E
Sbjct: 126 --SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWAT 179
Query: 174 -GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAM 223
S A E GYPGG +PL LA I N KL EIK+ RLAM
Sbjct: 180 PWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAM 239
Query: 224 VAMLGIFVQA 233
+AML + +A
Sbjct: 240 LAMLIFYFEA 249
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 117/215 (54%), Gaps = 35/215 (16%)
Query: 44 RRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
RR L A + +W+P + PP+LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 28 RRALVIAAAAAAKKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 87
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLL 152
EL+H R+AMA V GI +GI W+EAGA F F S L QLLL
Sbjct: 88 ELIHGRWAMAAVLGIFVGQAW--SGIP----WFEAGADPSAIAPFSFGS---LLGTQLLL 138
Query: 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLA----- 202
MG+ E+KR++D+ +P SQ E + A E E GYPGG +PLGLA
Sbjct: 139 MGWVESKRWVDFFNPDSQAVEWATPWSRTA-ENFANFTGEQGYPGGKFFDPLGLAGTVKD 197
Query: 203 ----KDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
D+ KL EIK+ R+AM+AML + +A
Sbjct: 198 GVYIPDVDKLERLKLAEIKHARIAMLAMLAFYFEA 232
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 118/220 (53%), Gaps = 16/220 (7%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ RP WL + D P +L G GD+GFD GLG DP + Y E++H R+AM G
Sbjct: 101 EARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG 160
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
++ +LL + GI PVW++ G + + + L I L + G + + +
Sbjct: 161 VVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAG---GQGVIVIAICQA 217
Query: 170 QTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
G + +E LEP YPGG L +PLGL+KD E K+KEIKNGR
Sbjct: 218 LLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGR 277
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
LAMVA LG ++QA+VT GP+ N++EHLSDP H I+ +
Sbjct: 278 LAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNNILSSF 317
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 41/245 (16%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTT---RRYLATVVRAQQRPTWLPGVD------PPP 67
S F+C K S + +A + K G + +R + V A ++ +W+P V P
Sbjct: 15 SHFLCG--GKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKK-SWIPAVKGGGSFIDPE 71
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+
Sbjct: 72 WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW--SGVP--- 126
Query: 128 VWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQ--------TKEGSFF 177
W+EAGA A S +L QLLLMG+ E+KR++D+ +P SQ +K F
Sbjct: 127 -WFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENF 185
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAMVAMLG 228
G E GYPGG +PLG A I++ KL EIK+ R+AM+AML
Sbjct: 186 GNSTG----EQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAMLAMLI 241
Query: 229 IFVQA 233
+ +A
Sbjct: 242 FYFEA 246
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 123/234 (52%), Gaps = 31/234 (13%)
Query: 35 FLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWY 94
F P S RR+ + V + + W+PG PP+LDG+ GDFGFDPL LG PE+L Y
Sbjct: 28 FSPTSSLVGRRHGSRVSMSAE---WMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERY 84
Query: 95 VQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFI 147
++EL+H R+AM V G+L + L + E W V + +
Sbjct: 85 KESELIHCRWAMLAVPGMLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLA 144
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
V+ L + F E++R + P + ++ YPGG +PLG +KD
Sbjct: 145 VEFLAIAFVESQRNGE---PDPEKRK----------------YPGG-AFDPLGFSKDPVK 184
Query: 208 AREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHLSDPWHKTIIQTL 260
+E+K+KEIKNGRLA++A +G VQAS GP++N+ HLSDPWH+ I + +
Sbjct: 185 FKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNIAEII 238
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 118/214 (55%), Gaps = 35/214 (16%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 40 RKLVVVAAAQPKKSWIPAVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 99
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QLLLM
Sbjct: 100 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLM 150
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLAKDIRNA 208
G+ E+KR++D+ +P SQ E + L A E E GYPGG +PLG A I++
Sbjct: 151 GWVESKRWVDFFNPESQAVEWATPWLRTA-ENFANTTGEQGYPGGKFFDPLGFAGTIKDG 209
Query: 209 ---------REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ R+AM+AML + +A
Sbjct: 210 VYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 243
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 118/235 (50%), Gaps = 48/235 (20%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WL V D P YL G GD+GFD GLG DP + Y E++H R+AM G+
Sbjct: 99 DRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGV 158
Query: 113 LFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTR---TLFIVQLLLMG 154
+ +LL + G+ PVW++ G + F+ A + + I Q LLM
Sbjct: 159 VVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAICQALLMV 218
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDI 205
E RY +E LEP YPGGPL +PLGL+KD
Sbjct: 219 GPEYARY-------------------CGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDP 259
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ K+KEIKNGRLAMVA G ++QA+VT GP+ N++EHLSDP + I+ +
Sbjct: 260 VAFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILSSF 314
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 119/232 (51%), Gaps = 48/232 (20%)
Query: 56 RPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP WL + D P +L G GD+GFD GLG DP + Y E++H R+AM G++
Sbjct: 95 RPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVV 154
Query: 114 FTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLMGF 155
+LL + GI PVW++ G + F+ A + + ++ Q+LLM
Sbjct: 155 VPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQVLLMVG 214
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIR 206
E RY +E LEP YPGG L +PLGL+KD
Sbjct: 215 PEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPV 255
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
E+K+KEIKNGRLAMVA +G ++QA+VT GP+ N+ EHLSDP H I+
Sbjct: 256 AFEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 121/229 (52%), Gaps = 35/229 (15%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP +G++ R + W+PG PPYLDG+ GDFGFDPL LGE PE+L +
Sbjct: 32 LPCVNGSSSRITMSA-------DWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFK 84
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIV 148
++EL+H R+AM V GIL + L + + W G + + + T+ ++
Sbjct: 85 ESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVI 144
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
+ L + F E +R M+ + K+ YPGG +PLG +KD
Sbjct: 145 EFLAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSKDPAKF 184
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
E+K+KEIKNGRLA++A +GI VQ S GP++N+ HL+DPWH I
Sbjct: 185 HEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 119/227 (52%), Gaps = 30/227 (13%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPES--------LRWYVQAELVHARFAMAGVAG 111
+P YLDGTL GDFGFDPLGL DP S RW AEL+HAR+AM G AG
Sbjct: 5 MPTASSLSYLDGTLPGDFGFDPLGL-FDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAG 63
Query: 112 ILFTDLL-------RVTGIRELPVWYEAG-----AVEFKFA-STRTLFIVQLLLMGFAET 158
L + L + TG+ +W++ G + F + LF VQ+++MG AE
Sbjct: 64 CLAPEYLAHEKVIPKATGL----LWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVAEG 119
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPG---YPGGPLLNPLGLAKDIRNAREWKLKE 215
R +YI+PGS + GLE + G YPGG + NPLGL + RE + E
Sbjct: 120 LRGAEYIAPGS-LRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAE 178
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
I++GRLAM+A LG QA VT GP DN HL +P ++ L N
Sbjct: 179 IRHGRLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLLGN 225
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 113/213 (53%), Gaps = 33/213 (15%)
Query: 54 QQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ RP +L P YL G GD+G+D GL DP + + Y + E++HAR+AM G G
Sbjct: 92 ENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALG 151
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFA-------------STRTLFIVQLLLMGFAET 158
+F +LL G LPVW++AG F+ S + VQ++LMG +E
Sbjct: 152 CIFPELLNSAGFN-LPVWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEA 210
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
R+ G G A + YPGG +PLG AKD A E K+KEIKN
Sbjct: 211 YRF-----------NGGPLGEPADVL-----YPGG-AFDPLGFAKDPSKAAELKVKEIKN 253
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GRLAM AMLG +VQA T GPI+N+ EHL+DP
Sbjct: 254 GRLAMTAMLGYYVQALATGKGPIENLSEHLADP 286
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 36/233 (15%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
LP+ +GT+R ++ W+PG PPYLDG+ GDFGFDPL LGE PE+L Y
Sbjct: 32 LPSVNGTSRVTMSA--------NWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYK 83
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-------ASTRTLFIV 148
++EL+H R+AM V GIL + L + + W + + + + +
Sbjct: 84 ESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAATPGGQATYLGQPVPWGTLPIILAI 143
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
+ + + F E +R M+ ++ K+ YPGG +PLG +KD +
Sbjct: 144 EFVAIAFVEHQRSMEK---DTEKKK----------------YPGG-AFDPLGYSKDPQKF 183
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTIIQTL 260
E+K+KEIKNGRLA++A +GI VQ + GP++N+ HL+DPWH I L
Sbjct: 184 EEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDVL 236
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 117/211 (55%), Gaps = 33/211 (15%)
Query: 47 LATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
L V AQ + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+
Sbjct: 42 LVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELI 101
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGF 155
H R+AMA V GI +GI W+EAGA F F S L QLLLMG+
Sbjct: 102 HGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGW 152
Query: 156 AETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA--- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PLG A +++
Sbjct: 153 VESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYI 212
Query: 209 ------REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ R+AM+AML + +A
Sbjct: 213 ADTEKLERLKLAEIKHARIAMLAMLIFYFEA 243
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 118/214 (55%), Gaps = 22/214 (10%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G LAGD+G+DPLGLG+DPE++ Y + EL+HAR+AM AGIL + L+ G
Sbjct: 72 PEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 131
Query: 125 ELPVWYEAGAVEFKFASTRTLF-----------------IVQLLLMGFAETKRYMDYISP 167
+ W+E GA E T F V++ LMG E R
Sbjct: 132 KGGTWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPA 190
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G F + +GL+P YPGGP +PLGLA D +E K+KEIKNGRLAMV++L
Sbjct: 191 GYSPGIGKFD--SSVFDGLDPLYPGGP-FDPLGLADDPEVLQELKVKEIKNGRLAMVSVL 247
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
G VQ+ VT GP N +H++DP+ ++ L
Sbjct: 248 GFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLG 281
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 51/275 (18%)
Query: 1 MAVAVGRGFLLQP-------SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRA 53
MA AVG ++ P SS+ S + N S+G+ + R
Sbjct: 1 MATAVGCLHIVAPVAFAGTFSSAKSRFFSPTNSLSLGVCNG----------------SRV 44
Query: 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
W+PG P +LDG+ GDFGFDPLGLG PE+L Y ++EL+H R+AM V G+L
Sbjct: 45 SMSAEWMPGQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVL 104
Query: 114 FTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ L + E W V + + + L M FAE++R +
Sbjct: 105 IPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAESQRNGE--- 161
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
P + ++ YPGG +PLG +KD E+K+KEIKNGRLA++A
Sbjct: 162 PDLEKRK----------------YPGG-AFDPLGFSKDPAKFEEYKVKEIKNGRLALLAF 204
Query: 227 LGIFVQASVTH-VGPIDNILEHLSDPWHKTIIQTL 260
+G VQAS GP++N+ HLSDPWHK I + +
Sbjct: 205 VGFCVQASANPGTGPLENLATHLSDPWHKNIAEII 239
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 33/241 (13%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+ ++ TS + R L V A + +W+PGV P +LD
Sbjct: 15 SSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPGVRGGGNLVDPEWLD 74
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W+
Sbjct: 75 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGVP----WF 128
Query: 131 EAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEA 181
EAGA F F S L QL+LMG+ E+KR++D+ +P SQ+ E S
Sbjct: 129 EAGADPNAIAPFSFGS---LLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENF 185
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAMVAMLGIFVQ 232
A E GYPGG +PLG A +++ KL EIK+ R+AM+AML + +
Sbjct: 186 ANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFE 245
Query: 233 A 233
A
Sbjct: 246 A 246
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 119/235 (50%), Gaps = 48/235 (20%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WL V D P +L G GD+GFD GLG DP + Y E++H R+AM G+
Sbjct: 98 DRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALGV 157
Query: 113 LFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLMG 154
+ +LL + G+ PVW++ G + F+ A + + ++ Q LLM
Sbjct: 158 VIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMV 217
Query: 155 FAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDI 205
E RY +E LEP YPGG L +PLGL+KD
Sbjct: 218 GPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDP 258
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ K+KEIKNGRLAMVA LG ++QA+VT GP+ N++EHLSDP H I+ +
Sbjct: 259 VAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILSSF 313
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 16/225 (7%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GL EDP + + + E++HAR+AM G
Sbjct: 116 EERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLG 175
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
L ++L + G P+W+ G + K + L I L L G ++ + +
Sbjct: 176 ALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG---SQGVIVIAICQA 232
Query: 170 QTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
G + +E LEP YPGG L +PL L+KD E K+KEIKNGR
Sbjct: 233 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 292
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
LAMVA LG + QA++T GP+ N+L+H++DP+H + L +S S
Sbjct: 293 LAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFS 337
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 16/225 (7%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GL EDP + + + E++HAR+AM G
Sbjct: 116 EERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLG 175
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
L ++L + G P+W+ G + K + L I L L G ++ + +
Sbjct: 176 ALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG---SQGVIVIAICQA 232
Query: 170 QTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
G + +E LEP YPGG L +PL L+KD E K+KEIKNGR
Sbjct: 233 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGR 292
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
LAMVA LG + QA++T GP+ N+L H++DP+H + L +S S
Sbjct: 293 LAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFLSLLNSSFS 337
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 132/254 (51%), Gaps = 47/254 (18%)
Query: 5 VGRGFLLQPSSSSSFICN-DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGV 63
+G FL P S + + N+++ G ++ F+ V+ AQ + +W+P V
Sbjct: 13 LGSSFLRGPKRSHALLSAIGANRTASGASTKFV-------------VMAAQPKKSWIPAV 59
Query: 64 D------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 60 KGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQA 119
Query: 118 LRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+GI W+EAGA F F S L QL+LMG+ E+KR++D+ +P SQ+
Sbjct: 120 W--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILMGWVESKRWVDFFNPDSQSV 170
Query: 173 E----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNAREWKLKEIKNG 219
E S A E GYPGG +PLG A D+ K+ EIK+
Sbjct: 171 EWATPWSRTSENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHA 230
Query: 220 RLAMVAMLGIFVQA 233
RLAM+AML + +A
Sbjct: 231 RLAMLAMLIFYFEA 244
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 119/230 (51%), Gaps = 40/230 (17%)
Query: 56 RPTWLP-----GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
RP WLP GV P YL G GD+G+D LGL DPE+ Y +AEL+HAR+AM G
Sbjct: 130 RPKWLPDAFLAGV--PDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGAL 187
Query: 111 GILFTDLLRVT---GIRELPVWYEAGAVEFKFASTRTL--------------FIVQLLLM 153
G +F ++L + G+ E PVW++AGA+ S L Q+LLM
Sbjct: 188 GCIFPEILAMNYGVGLEE-PVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQVLLM 246
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
G AE R G E + +PGG NPL KD + E K+
Sbjct: 247 GGAEAYRASGVAPNG---------------EEFDKMHPGGYYFNPLKFGKDEADLAELKV 291
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
KEIKNGRLAM +MLG ++QA+ T GP+ N+++H +D ++ I + + S
Sbjct: 292 KEIKNGRLAMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYVFTS 341
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 123/214 (57%), Gaps = 24/214 (11%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W +EL+H R+AM GVAG++ ++L
Sbjct: 61 YLDGSLPGDYGFDPLGL-SDPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGM 119
Query: 122 GIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
GI +P VW++AG + + +AS T+F + LM AE +R DY +PGS
Sbjct: 120 GI--IPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAELRRAQDYWNPGSMG 177
Query: 172 KEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
K+ F GLE L G +P YPGG N + + ++ K KEIKNGRLAM+A G
Sbjct: 178 KQ-DFAGLEKMLGGSGDPAYPGG-FFNFMKQGE--KDMAAMKTKEIKNGRLAMMACFGCG 233
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
QA +T GP+ N+++H+ DP+ ++ + G
Sbjct: 234 AQACMTGEGPVKNLVDHVIDPFGHNLLVNFSQIG 267
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 28/217 (12%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A+ R W+PG PPYLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM
Sbjct: 39 ASSSRFSMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAML 98
Query: 108 GVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKR 160
V GIL + L + + W G + + + T+ ++ L + F E +R
Sbjct: 99 AVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR 158
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
M+ + K+ YPGG +PLG +KD + E+K+KEIKNGR
Sbjct: 159 SMEK---DPEKKK----------------YPGG-AFDPLGYSKDPKTFHEYKVKEIKNGR 198
Query: 221 LAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
LA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 199 LALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 235
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 31/224 (13%)
Query: 30 GITSAFLPAKSGTTRRYLATVVRAQQRPTWLP-GVDPPPYLDGTLAGDFGFDPLGLGEDP 88
G +AF+ A + + V+AQ R W+ P +LDGTL GDFGFDPLGLG DP
Sbjct: 24 GSRAAFVAAPAMKVSSRASLTVKAQ-RELWIKDSTVAPAHLDGTLPGDFGFDPLGLGADP 82
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIV 148
+ L++Y +AEL++AR+AM VAGI T++L + P WY+ GA +F F L +
Sbjct: 83 QRLKYYQEAELMNARWAMMAVAGITATEVLGIG-----PAWYDVGAADFDFPPL-ALLAI 136
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
Q +MG E KR ++ G G+ +P +P+G+ N+
Sbjct: 137 QFPVMGILELKRIRGWLDTGK--------------SGVVDQFP----WDPMGM-----NS 173
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
+KEIKNGRLAM+A +GI VQA V GP+ + +H++DP+
Sbjct: 174 DGMAVKEIKNGRLAMIAFVGIVVQAIVYREGPVAALKDHVTDPF 217
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 118/214 (55%), Gaps = 22/214 (10%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G LAGD+G+DPLGLG+DPE++ Y + EL+HAR+AM AGIL + L+ G
Sbjct: 42 PDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 101
Query: 125 ELPVWYEAGAVEFKFASTRTLF-----------------IVQLLLMGFAETKRYMDYISP 167
+ W+E GA E T F V++ LMG E R
Sbjct: 102 KGGTWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGSGPA 160
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G F + +GL+P YPGGP +PLGLA D +E K+KEIKNGRLAMV++L
Sbjct: 161 GYSPGIGKFD--SSVFDGLDPLYPGGP-FDPLGLADDPEVLQELKVKEIKNGRLAMVSVL 217
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
G VQ+ VT GP N +H++DP+ ++ L
Sbjct: 218 GFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLG 251
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 13/180 (7%)
Query: 92 RWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAV----EFKF-AST 142
RW E+ + R AM GV G++ + L G+ +P W++AGA+ +++ A
Sbjct: 9 RWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADP 67
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGL 201
TLF+ ++ L+GFAE +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG
Sbjct: 68 YTLFVFEMALIGFAEHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGF 126
Query: 202 A-KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
K + +E KLKEIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 127 GTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 186
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 123/245 (50%), Gaps = 32/245 (13%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+C S+ +A +P G T ++ R W+PG P YLDG+ GDFGF
Sbjct: 14 VCPSFLSSTKSKFAAAMPVSVGATN----SMSRFSMSADWMPGQPRPSYLDGSAPGDFGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF 137
DPLGLGE P +L Y ++EL+H R+AM V GI+ + L + + W G +
Sbjct: 70 DPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129
Query: 138 -----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
+ + T+ ++ L + F E +R M+ S+ K+ YPG
Sbjct: 130 LGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKK----------------YPG 170
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDP 251
G +PLG +KD E K+KEIKNGRLA++A +G VQ S GP++N+ HL+DP
Sbjct: 171 G-AFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 229
Query: 252 WHKTI 256
WH I
Sbjct: 230 WHNNI 234
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 117/210 (55%), Gaps = 27/210 (12%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 46 RRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 105
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +G+ W+EAGA A S TL QL+LMG+
Sbjct: 106 LIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PL LA I++
Sbjct: 160 ESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIP 219
Query: 209 -----REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ R+AM+AML + +A
Sbjct: 220 DTEKLERLKLAEIKHARIAMLAMLIFYFEA 249
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 114/216 (52%), Gaps = 28/216 (12%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE PE+L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNGRL
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKFEELKVKEIKNGRL 197
Query: 222 AMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
A++A +G VQ S GP++N+ HL+DPWHK I
Sbjct: 198 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNI 233
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 126/212 (59%), Gaps = 23/212 (10%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
R +LPG D P YLDGTLAGD+GFDPLGLG D ++ Y AE++HAR+AM V
Sbjct: 97 NRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GKVKDYRVAEILHARWAMLAV 155
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRY 161
G++ + L + G VW E G V + R + +Q++LMG AE R
Sbjct: 156 PGVVIPEALNIPG----GVWTETGKVFLDGETGRDSILEFWPIYAAIQVVLMGGAEKFR- 210
Query: 162 MDYISP-GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
D + P G +G F E+A GL+P PGGPL + +AK+ ++ + K+KEIKNGR
Sbjct: 211 QDGVGPAGFVPFKGKF--EESAFNGLDPVNPGGPL-DFFDVAKNPQDLQILKVKEIKNGR 267
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
LAM+AMLG+FVQ +VT GP N +H+++P+
Sbjct: 268 LAMIAMLGVFVQGAVTGEGPAANWGKHVANPF 299
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 41/245 (16%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTT---RRYLATVVRAQQRPTWLPGVD------PPP 67
S F+C K S + +A + K G + +R + V A ++ +W+P V P
Sbjct: 15 SHFLCG--GKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKK-SWIPAVKGGGSFIDPE 71
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELP 127
+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+
Sbjct: 72 WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW--SGVP--- 126
Query: 128 VWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGS--------QTKEGSFF 177
W+EAGA A S +L QLLLMG+ E+KR++D+ +P S +K F
Sbjct: 127 -WFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSLSVEWATPWSKTAENF 185
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAMVAMLG 228
G E GYPGG +PLG A I++ KL EIK+ R+AM+AML
Sbjct: 186 GNSTG----EQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAMLAMLI 241
Query: 229 IFVQA 233
+ +A
Sbjct: 242 FYFEA 246
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 124/251 (49%), Gaps = 48/251 (19%)
Query: 39 KSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQ 96
+S + A+ +RP WL V + P +L G GD+GFD GLG DP + Y
Sbjct: 89 RSAARQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFN 148
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFAS 141
E++H R+AM G++ +LL + + PVW++ G + F+ A
Sbjct: 149 FEILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAG 208
Query: 142 TRTLFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------G 189
+ + ++ Q LLM E RY +E LEP
Sbjct: 209 GQGVIVIAICQALLMVGPEYARY-------------------CGIEALEPLGLYLPGDIN 249
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
YPGG L +PLGL+KD + K+KEIKNGRLAMVA LG ++QA+VT GPI N++EHLS
Sbjct: 250 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLS 309
Query: 250 DPWHKTIIQTL 260
DP H I+ +
Sbjct: 310 DPLHNNILSSF 320
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 129/250 (51%), Gaps = 51/250 (20%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP------PPYL 69
SSSF+ K + + A + A+ T +R++ + +W+P V P +L
Sbjct: 14 SSSFLTG--GKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 72 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 125
Query: 130 YEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYI----------SPGSQTKE- 173
+EAGA F F S L QLLLMG+ E+KR++D+ +P S+T E
Sbjct: 126 FEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAEN 182
Query: 174 -GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAM 223
+F G E GYPGG +PL LA + N KL EIK+ RLAM
Sbjct: 183 FANFTG--------EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAM 234
Query: 224 VAMLGIFVQA 233
+AML + +A
Sbjct: 235 LAMLIFYFEA 244
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 111/209 (53%), Gaps = 31/209 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 62 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 121
Query: 124 RELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGS 169
E VWY+AGA F L F+ L +MG E RY +
Sbjct: 122 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGD-- 179
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
FG E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG
Sbjct: 180 -------FGRE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGF 226
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
+VQ VT GP++N+ HL+DP I
Sbjct: 227 YVQPLVTKAGPVENLTFHLADPSSNNIFS 255
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 297 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 356
Query: 124 RELPVWYEAGA 134
E VWY+AGA
Sbjct: 357 GEGAVWYKAGA 367
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 70/185 (37%), Gaps = 35/185 (18%)
Query: 68 YLDGTLAGDFG-----------FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD 116
Y G GDFG FDPLGL DP++L EL + R AM + G
Sbjct: 171 YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQP 230
Query: 117 LLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
L+ G E + F A S+ +F FA + R +P S
Sbjct: 231 LVTKAGPVE--------NLTFHLADPSSNNIFSFTSGFAMFAASGRKS---APKSDNLS- 278
Query: 175 SFFGLEAA-----LEGLEPGY-----PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
++G + A L G P Y PG + GL D ++ E+ + R AM+
Sbjct: 279 QWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 338
Query: 225 AMLGI 229
LG+
Sbjct: 339 GALGV 343
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 113/210 (53%), Gaps = 28/210 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM V GIL + L
Sbjct: 48 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ ++ L + F E +R M+ +
Sbjct: 108 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK---DPEK 164
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
K+ YPGG +PLG +KD + E+K+KEIKNGRLA++A +G V
Sbjct: 165 KK----------------YPGG-AFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCV 207
Query: 232 QASV-THVGPIDNILEHLSDPWHKTIIQTL 260
Q S GP++N+ HL+DPWH I L
Sbjct: 208 QQSAYPGTGPLENLATHLADPWHNNIGNVL 237
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 111/200 (55%), Gaps = 13/200 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 114 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 173
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 174 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 233
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ VT
Sbjct: 234 RE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKA 287
Query: 239 GPIDNILEHLSDPWHKTIIQ 258
GP++N+ HL+DP I
Sbjct: 288 GPVENLTFHLADPSSNNIFS 307
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 109/200 (54%), Gaps = 18/200 (9%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM ++ +LL G+
Sbjct: 349 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAM-----LVTPELLAGNGVPF 403
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 404 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 463
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ VT
Sbjct: 464 RE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKA 517
Query: 239 GPIDNILEHLSDPWHKTIIQ 258
GP++N+ HL+DP I
Sbjct: 518 GPVENLTFHLADPSSNNIFS 537
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+
Sbjct: 5 YPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLA 63
Query: 250 DPWHKTIIQ 258
DP I
Sbjct: 64 DPSSNNIFS 72
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 114/217 (52%), Gaps = 28/217 (12%)
Query: 48 ATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMA 107
A R W+PG PPYLDG+ GDFGFDPL LGE PE+L Y ++EL+H R+AM
Sbjct: 37 AGSARVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAML 96
Query: 108 GVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKR 160
V G+L + L + + W G + + + T+ ++ L + F E +R
Sbjct: 97 AVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR 156
Query: 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
M+ ++ K+ YPGG +PLG +KD E+K+KEIKNGR
Sbjct: 157 SMEK---DTEKKK----------------YPGG-AFDPLGYSKDPVKFEEYKVKEIKNGR 196
Query: 221 LAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
LA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 197 LAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 233
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 111/206 (53%), Gaps = 28/206 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L
Sbjct: 49 WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEAL 108
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ ++ L + F E +R M+ +
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DPEK 165
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
K+ YPGG +PLG +KD + E K+KEIKNGRLA++A +G V
Sbjct: 166 KK----------------YPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCV 208
Query: 232 QASV-THVGPIDNILEHLSDPWHKTI 256
Q S GP++N+ HL+DPWH I
Sbjct: 209 QQSAYPGTGPLENLATHLADPWHNNI 234
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 126/231 (54%), Gaps = 26/231 (11%)
Query: 48 ATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
A+V Q RP WL + D P +L G+ GD+GFD GLG+DP + E++HAR+A
Sbjct: 96 ASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWA 155
Query: 106 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMG-----FAET 158
M G++ ++L + G++ VW+ G + + + L I L ++G
Sbjct: 156 MLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAI 215
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAR 209
+++ + P + + G+EA LEP YPGG L +PLGL+KD
Sbjct: 216 CQFLLMVGP----EYARYCGIEA----LEPLGIYLPGDINYPGGVLFDPLGLSKDPATFE 267
Query: 210 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E K+KEIKNGRLAMVA LG +VQA VT GP++N+L+HL DP H + ++
Sbjct: 268 ELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 30/206 (14%)
Query: 59 WLPG-VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLP P +LDGT+AGD+GFDPLGLG DP L++Y +AEL++AR+AM VAGI+ T+
Sbjct: 2 WLPAPYKAPAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAGIVGTE- 60
Query: 118 LRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ GI P W+EAG ++ F + L VQL +MG+ E KR +++ GS
Sbjct: 61 --IAGIE--PRWWEAGTEDYGF-PPQALLAVQLPVMGYLENKRIQGWLATGSS------- 108
Query: 178 GLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
G+ +P +P+G+ +KD + KLKEIKNGR AM+A +GI VQ V
Sbjct: 109 -------GVNETFP----FDPMGMGSKD----EKMKLKEIKNGRAAMIAFVGIVVQGIVY 153
Query: 237 HVGPIDNILEHLSDPWHKTIIQTLAN 262
GP+ + +H+++P+ + + N
Sbjct: 154 REGPVAALKDHVANPFGCNMATNIMN 179
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 124/241 (51%), Gaps = 33/241 (13%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+ ++ + A+ + + AQ + +W+P V P +LD
Sbjct: 15 SSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLD 74
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W+
Sbjct: 75 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGV----AWF 128
Query: 131 EAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEA 181
EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E S
Sbjct: 129 EAGAQPDAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENF 185
Query: 182 ALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
A + GYPGG +PLGLA D KL EIK+ RLAMVAML + +
Sbjct: 186 ANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFE 245
Query: 233 A 233
A
Sbjct: 246 A 246
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 112/210 (53%), Gaps = 28/210 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM V GIL + L
Sbjct: 48 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W + + + T+ ++ L + F E +R M+ +
Sbjct: 108 GLGNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEK---DPEK 164
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
K+ YPGG +PLG +KD + E+K+KEIKNGRLA++A +G V
Sbjct: 165 KK----------------YPGG-AFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCV 207
Query: 232 QASV-THVGPIDNILEHLSDPWHKTIIQTL 260
Q S GP++N+ HL+DPWH I L
Sbjct: 208 QQSAYPGTGPLENLATHLADPWHNNIGNVL 237
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 116/235 (49%), Gaps = 34/235 (14%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRA----QQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTVSAKTAAPRGFAGRRVAAVSNGCRVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG+DP SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGNWYDAPLWAVTGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F TL + + M AE G + G YPGG +
Sbjct: 124 PF-DLNTLLAFEFVAMAAAE----------GQRNDAGGVI------------YPGGA-FD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
PLG AKD A E KLKEIKNGRLAMVA LG Q + T GP+ + EHL++PW
Sbjct: 160 PLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAATGKGPLAALGEHLANPW 214
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 124/241 (51%), Gaps = 33/241 (13%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYLD 70
SSF+ ++ + A+ + + AQ + +W+P V P +LD
Sbjct: 15 SSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLD 74
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
G+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W+
Sbjct: 75 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGV----AWF 128
Query: 131 EAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLEA 181
EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E S
Sbjct: 129 EAGAQPDAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENF 185
Query: 182 ALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
A + GYPGG +PLGLA D KL EIK+ RLAMVAML + +
Sbjct: 186 ANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFE 245
Query: 233 A 233
A
Sbjct: 246 A 246
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 115/212 (54%), Gaps = 35/212 (16%)
Query: 47 LATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELV 100
L V + +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+
Sbjct: 42 LVVVAAVAPKKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELI 101
Query: 101 HARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGF 155
H R+AMA V GI +GI W+EAGA F F S L QLLLMG+
Sbjct: 102 HGRWAMAAVLGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGW 152
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLA-------- 202
E+KR++D+ +P SQ+ E + A E E GYPGG +PLGLA
Sbjct: 153 VESKRWVDFFNPDSQSVEWATPWSRTA-ENFANFTGEQGYPGGKFFDPLGLAGTVKDGVY 211
Query: 203 -KDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
D+ KL EIK+ RLAM+AML + +A
Sbjct: 212 IPDVDKLERLKLAEIKHARLAMLAMLIFYFEA 243
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 113/200 (56%), Gaps = 29/200 (14%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P + PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V
Sbjct: 44 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 103
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISP 167
GI +GI W+EAGA A S +L QLLLMG+ E+KR++D+ +P
Sbjct: 104 LGIFVGQAW--SGIP----WFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 157
Query: 168 GSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLA---------KDIRNAREWKL 213
SQ E + A E E GYPGG +PLGLA D+ KL
Sbjct: 158 DSQAVEWATPWSRTA-ENFANFTGEQGYPGGKFFDPLGLAGTVKDGVYIPDVDKLERLKL 216
Query: 214 KEIKNGRLAMVAMLGIFVQA 233
EIK+ R+AM+AML + +A
Sbjct: 217 AEIKHARIAMLAMLAFYFEA 236
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 111/209 (53%), Gaps = 31/209 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 408 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 467
Query: 124 RELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGS 169
E VWY+AGA F L F+ L +MG E RY +
Sbjct: 468 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGD-- 525
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
FG E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG
Sbjct: 526 -------FGRE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGF 572
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
+VQ VT GP++N+ HL+DP I
Sbjct: 573 YVQPLVTKAGPVENLTFHLADPSANNIFS 601
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 109/210 (51%), Gaps = 23/210 (10%)
Query: 55 QRPTWL---PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
RP WL G P YL G AGD+GFD GL DP+ + Y AEL + R+AM GV G
Sbjct: 159 NRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLG 218
Query: 112 ILFTDLL-RVTGI-RELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
L ++L V G+ PVW++ GA S L +L+ + +
Sbjct: 219 CLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLI---------HASNLLLTL 269
Query: 170 QTKEGSFFGLEAALEGLE--------PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
+ FF E E E YPGG + +PLGL+KD E K+KE+KNGRL
Sbjct: 270 VLELVFFFAAETWREAGEGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKVKEVKNGRL 328
Query: 222 AMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
AM+AMLG+FVQA VT P++N+ HL++P
Sbjct: 329 AMLAMLGLFVQAGVTGQSPLENLSAHLANP 358
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
E VWY+AGA F L F+ L +MG E RY +
Sbjct: 8 EGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGD--- 64
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
FG E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +
Sbjct: 65 ------FGRE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFY 112
Query: 231 VQASVTHVGPIDNILEHLSDPWHKTIIQ 258
VQ VT GP++N+ HL+DP I
Sbjct: 113 VQPLVTKAGPVENLTFHLADPSANNIFS 140
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 68 YLDGTLAGDFG-----------FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTD 116
Y G GDFG FDPLGL DP++L EL + R AM + G
Sbjct: 56 YRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQP 115
Query: 117 LLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEG 174
L+ G E + F A S +F FA T + P G
Sbjct: 116 LVTKAGPVE--------NLTFHLADPSANNIFSFTSGFAMFAATGS--KWYGPNRPKWLG 165
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
G A E L+ Y G + GLA D + + ++ E++NGR AM+ +LG
Sbjct: 166 PLSG-GAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEV 224
Query: 235 VTHV 238
+++V
Sbjct: 225 LSNV 228
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 114/204 (55%), Gaps = 27/204 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 46 RRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 105
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +G+ W+EAGA A S TL QL+LMG+
Sbjct: 106 LIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PL LA I++
Sbjct: 160 ESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIP 219
Query: 209 -----REWKLKEIKNGRLAMVAML 227
KL EIK+ R+AM+AML
Sbjct: 220 DTEKLERLKLAEIKHARIAMLAML 243
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ PG +PLGL KD + ++ E+ +GR AM A+LGIFV + + V
Sbjct: 74 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV 128
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 26/231 (11%)
Query: 48 ATVVRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
A+V Q RP WL + D P +L G+ GD+GFD GLG+DP + E++HAR+A
Sbjct: 96 ASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWA 155
Query: 106 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMG-----FAET 158
M G++ ++L + G+ VW+ G + + + L I L ++G
Sbjct: 156 MLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAI 215
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAR 209
+++ + P + + G+EA LEP YPGG L +PLGL+KD
Sbjct: 216 CQFLLMVGP----EYARYCGIEA----LEPLGIYLPGDINYPGGVLFDPLGLSKDPATFE 267
Query: 210 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E K+KEIKNGRLAMVA LG +VQA VT GP++N+L+HL DP H + ++
Sbjct: 268 ELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 31/208 (14%)
Query: 48 ATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
A VV A++ +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H
Sbjct: 42 ALVVSAKK--SWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 99
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETK 159
R+AMA V GI +G+ W+EAGA A S+ +L QLLLMG+ E+K
Sbjct: 100 GRWAMAAVLGIFVGQAW--SGVP----WFEAGAQPEAIAPFSSGSLLGTQLLLMGWVESK 153
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLAKDIRNA------ 208
R++D+ +P SQ+ E + A E E GYPGG +PLGL + R+
Sbjct: 154 RWVDFFNPDSQSVEWATPWSRTA-ENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDT 212
Query: 209 ---REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ RLAM+AML + +A
Sbjct: 213 DKLDRLKLAEIKHARLAMLAMLIFYFEA 240
>gi|384246702|gb|EIE20191.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 230
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 117/213 (54%), Gaps = 29/213 (13%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
T+V + R WLP +PP +L G LAGD GFDPLGLG +PE L+WY +AE + R+AMAG
Sbjct: 28 TLVTSAARGLWLPDTEPPAHLKGELAGDRGFDPLGLGSEPERLKWYTEAEKTNGRWAMAG 87
Query: 109 VAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
VAGIL +LL V P W+EAGA ++ F L ++ LL+GF E KRY + G
Sbjct: 88 VAGILGQELLGVQ-----PKWFEAGAKDYGFPPL-ALISLEFLLLGFLELKRYQGFKKTG 141
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G +P +P L + NA KEIKNGRLAMVA +G
Sbjct: 142 KS--------------GFLDSFP----FDPANLDSEA-NAE----KEIKNGRLAMVAFVG 178
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
A V GPI+ + HLSDP+ II ++A
Sbjct: 179 FVGAALVCRQGPIEALQSHLSDPFSNNIIGSIA 211
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 26/200 (13%)
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLPG D P YLDG L G FGFDP GLG P +L+ + +AELVH+R+AMAGVAG L +L
Sbjct: 36 NWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAEL 94
Query: 118 LRVTGIRELPVWYEAGAVEFKFA-----STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
L + P+W G + TL ++ + + AE +R + P ++ +
Sbjct: 95 LGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAEAQRNAE---PDAEKR 151
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
+ YPGG +PLG +KD + E KLKE+KNGRLAM+A +G Q
Sbjct: 152 K----------------YPGG-AFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQ 194
Query: 233 ASVTHVGPIDNILEHLSDPW 252
+ T GP++ + HL+DPW
Sbjct: 195 HAATGKGPLEALKLHLADPW 214
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 112/210 (53%), Gaps = 29/210 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG P YLDG+ GDFGFDPLGLGE PE+L + ++EL+HAR+AM V G+L + L
Sbjct: 47 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 106
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W + + + + ++ L + FAE++R + P +
Sbjct: 107 GYGNWVSAQKWAATPGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQRNGE---PDPEK 163
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
++ YPGG +PLG +K N E KLKEIKNGRLA+VA LG V
Sbjct: 164 RK----------------YPGG-AFDPLGFSKGA-NLEELKLKEIKNGRLALVAFLGFAV 205
Query: 232 QA-SVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA + GP++N+ HL+DPWH TI +
Sbjct: 206 QAIAYPGTGPLENLKTHLADPWHNTIAHVI 235
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 28/217 (12%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R W+PG PP+LDG+ GDFGFDPL LG PE+L Y ++EL+H R+AM V G
Sbjct: 3 RVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPG 62
Query: 112 ILFTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
+L + L + E W V + + V+ L + F E++R +
Sbjct: 63 MLIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGE- 121
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
P + ++ YPGG +PLG +KD +E+K+KEIKNGRLA++
Sbjct: 122 --PDPEKRK----------------YPGG-AFDPLGFSKDPVKFKEYKVKEIKNGRLALL 162
Query: 225 AMLGIFVQASVTH-VGPIDNILEHLSDPWHKTIIQTL 260
A +G VQAS GP++N+ HLSDPWH+ I + +
Sbjct: 163 AFVGFCVQASANPGTGPLENLATHLSDPWHRNIAEII 199
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 28/216 (12%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE PE+L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNGRL
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 AMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
A++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 198 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 111/200 (55%), Gaps = 13/200 (6%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 151 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 210
Query: 124 RELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
E VWY+AGA F + +L Q +++ F T M + FG
Sbjct: 211 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 270
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ VT
Sbjct: 271 RE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKA 324
Query: 239 GPIDNILEHLSDPWHKTIIQ 258
GP++N+ HL+DP I
Sbjct: 325 GPVENLTFHLADPSANNIFS 344
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 111/209 (53%), Gaps = 31/209 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-- 123
P YL G L GD+G+D GLG DP +L Y +AE++HAR+AM G G++ +LL G+
Sbjct: 612 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 671
Query: 124 RELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGS 169
E VWY+AGA F L F+ L +MG E RY + G
Sbjct: 672 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV--GD 729
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
+E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG
Sbjct: 730 SGRE------------LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGF 776
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
+VQ VT GP++N+ HL+DP I
Sbjct: 777 YVQPLVTKAGPVENLTFHLADPSANNIFS 805
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 114/222 (51%), Gaps = 33/222 (14%)
Query: 55 QRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
R WL G P YL G L GD+G+D GLG DP L Y A+++H R+AM GV G
Sbjct: 841 DRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGVLGC 900
Query: 113 LFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFA 156
F + + G PVW++AGA F L F+ L+LMG
Sbjct: 901 WFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLSTLVLMGAV 960
Query: 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEI 216
E R S GS G+ L+P YPGGP +PLGLA D E K+KE+
Sbjct: 961 EAYR-----SAGSVGDFGA---------DLDPLYPGGPF-DPLGLADDPEAFLELKVKEV 1005
Query: 217 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
KNGRLAMVA+ G FVQ +T GP++N ++HL+DP+ I Q
Sbjct: 1006 KNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQ 1047
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 132/272 (48%), Gaps = 37/272 (13%)
Query: 1 MAVAVGRGFLLQPSSSS-------SFICNDVNKSSI-GITSAFLPAKSGTTRRYLATVVR 52
+A+ GF +QP + +F D + ++I TS F + ++ Y
Sbjct: 307 LAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAATGSKWY------ 360
Query: 53 AQQRPTWL---PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP WL G P YL G AGD+GFD GL DP+ + Y AEL + R+AM GV
Sbjct: 361 GPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGV 420
Query: 110 AGILFTDLL-RVTGI-RELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 167
G L ++L V G+ PVW++ GA S L +L+ + +
Sbjct: 421 LGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLI---------HASNLLL 471
Query: 168 GSQTKEGSFFGLEAALEGLE--------PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
+ FF E E E YPGG + +PLGL+KD E K+KE+KNG
Sbjct: 472 TLVLELVFFFAAETWREAGEGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEAKVKEVKNG 530
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
RLAM+AMLG+FVQA VT P++N+ HL++P
Sbjct: 531 RLAMLAMLGLFVQAGVTGQSPLENLSAHLANP 562
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 15/113 (13%)
Query: 146 FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDI 205
F+ L+LMG E R S GS G+ L+P YPGGP +PLGLA D
Sbjct: 10 FLSTLVLMGAVEAYR-----SAGSVGDFGA---------DLDPLYPGGPF-DPLGLADDP 54
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
E K+KE+KNGRLAMVA+ G VQ +T GP++N ++HL+DP+ + Q
Sbjct: 55 EAFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQ 107
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 115/197 (58%), Gaps = 27/197 (13%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG++AGD+GFDPLGLG +P+ L++Y +AEL++AR+AM VAGI+ T+ V GI
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTE---VAGIE- 92
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
P W+EAG ++ F L +Q +MG+ E KR +++ GS G
Sbjct: 93 -PRWWEAGTEDYGFPPA-ALLAIQFPVMGYLENKRIQGWMATGSS--------------G 136
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL 245
+ +P +P+G+ N KLKEIKNGR AM+A +GI VQA V GP+ +
Sbjct: 137 VNETFP----FDPMGMGSKDANM---KLKEIKNGRAAMIAFVGIVVQAIVYREGPVAALK 189
Query: 246 EHLSDPWHKTIIQTLAN 262
+H+S+P+ + + N
Sbjct: 190 DHISNPFGCNMATNIMN 206
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 113/204 (55%), Gaps = 27/204 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 45 RRLIVVAAAAPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 104
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFA 156
L+H R+AMA V GI +G+ W+EAGA A S TL QL+LMG+
Sbjct: 105 LIHGRWAMAAVLGIFVGQAW--SGVP----WFEAGADPNAIAPFSFGTLLGTQLILMGWV 158
Query: 157 ETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---- 208
E+KR++D+ +P SQ+ E S A E GYPGG +PL A I++
Sbjct: 159 ESKRWVDFFNPDSQSVEWATPWSRTAENFANASGEHGYPGGKFFDPLSFAGTIKDGVYIP 218
Query: 209 -----REWKLKEIKNGRLAMVAML 227
KL EIK+ R+AM+AML
Sbjct: 219 DTEKLERLKLAEIKHARIAMLAML 242
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ PG +PLGL KD + ++ E+ +GR AM A+LGIFV + + V
Sbjct: 73 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV 127
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 122/243 (50%), Gaps = 33/243 (13%)
Query: 27 SSIGITSAFLPA-KSGTT----RRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 13 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 72
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG-------A 134
LGLG PE+ + ++E+ H R+AM V G+L + L + + W
Sbjct: 73 LGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFG 132
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
V + + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 VPVPWGNLPTILAIEFLAIAFAEHQRTMEK---DPEKKK----------------YPGG- 172
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 253
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 AFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWH 232
Query: 254 KTI 256
I
Sbjct: 233 NNI 235
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 117/203 (57%), Gaps = 29/203 (14%)
Query: 53 AQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
A + +W+P V P +LDG+L GD+GFDPLGLG DP +L+WY +AEL+H R+AM
Sbjct: 12 AGGKKSWIPAVKGGGNLTDPEWLDGSLPGDYGFDPLGLGRDPAALKWYREAELIHGRWAM 71
Query: 107 AGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDY 164
A V GI G +P W+EAGA A S +L QLLLMG+ ETKR++D+
Sbjct: 72 AAVVGIFVGQ-----GWSGVP-WFEAGADPAALAPFSFGSLLGTQLLLMGWVETKRWIDF 125
Query: 165 ISPGSQTKEGSFFGLEAALE-----GLEPGYPGGPLLNPLGLAKDIRNAR---------E 210
++PG+Q+ E + A GL+ GYPGG +PL LA ++ +
Sbjct: 126 LNPGTQSVEWATPWSRTAENFNNSTGLQ-GYPGGKFFDPLALAGSVQGGQYVPDFSKLER 184
Query: 211 WKLKEIKNGRLAMVAMLGIFVQA 233
+L EIK+ RLAMVAML + +A
Sbjct: 185 LQLAEIKHARLAMVAMLIFYFEA 207
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 117/216 (54%), Gaps = 22/216 (10%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G LAGD+G+DPLGLG+D E++ Y + EL+HAR+AM AGIL + L+ G
Sbjct: 69 PAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQANGANI 128
Query: 125 ELPVWYEAGAVEFKFASTRTLFIV-----------------QLLLMGFAETKRYMDYISP 167
+ VW+E GA E T F V ++ LMG E R
Sbjct: 129 KGGVWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEVGLMGAVEFYRRNGTGPA 187
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G F + EGL+ YPGGP +PLGLA D +E K+KEIKNGRLAMV++L
Sbjct: 188 GYSPGIGKFD--SSVFEGLDSIYPGGP-FDPLGLADDPEVFQELKVKEIKNGRLAMVSVL 244
Query: 228 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
+Q+ VT GP N ++H+ DP+ ++ L N
Sbjct: 245 AFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVLGNE 280
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 44 RRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+ + AQ + +W+P V P +LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 42 KTLIVAAAAAQPKKSWIPAVKGGGNLLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 101
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLL 152
EL+H R+AMA V GI +G+ W+EAGA F F S L QLLL
Sbjct: 102 ELIHGRWAMAAVLGIFVGQAW--SGV----PWFEAGADPRAIAPFSFGS---LLGTQLLL 152
Query: 153 MGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
MG+ E+KR++D+ +P SQ+ E S A + GYPGG +PLGLA R+
Sbjct: 153 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDG 212
Query: 209 -----RE----WKLKEIKNGRLAMVAMLGIFVQA 233
RE KL EIK+ RLAMVAML + +A
Sbjct: 213 VYEPDREKLERLKLAEIKHSRLAMVAMLIFYFEA 246
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 127/251 (50%), Gaps = 42/251 (16%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTL 73
SSS S V SS G+T+A ++ R+ + W+PG PPYLDG+
Sbjct: 13 SSSKSRFATAVPLSSFGVTNA-------SSSRFSMSA-------DWMPGQPRPPYLDGSA 58
Query: 74 AGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YE 131
GDFGFDPL LGE PE+L + ++EL+H +AM V GIL + L + + W
Sbjct: 59 PGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWVKAQEWAAVP 118
Query: 132 AGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL 186
G + + + T+ ++ L + F E +R M G ++
Sbjct: 119 GGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSM-----GKDPEKKK----------- 162
Query: 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNIL 245
YPGG +PLG +KD + E+K+KE+KNGRLA++A +G VQ S GP++N+
Sbjct: 163 ---YPGG-AFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLA 218
Query: 246 EHLSDPWHKTI 256
HL+DPWH I
Sbjct: 219 AHLADPWHNNI 229
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPT----WLPGVDPPPYLDGTLAGDFGFDPL 82
S++G+ S P+ ++R R T W+PG P +LDG+ GDFGFDPL
Sbjct: 13 SAVGVPSLLAPSSRWSSRLPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 72
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF--- 137
GL PE+ + ++E+ H R+AM V GIL + L + + W G +
Sbjct: 73 GLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGN 132
Query: 138 --KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ S T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 133 PVPWGSLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-A 172
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHK 254
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 232
Query: 255 TI 256
I
Sbjct: 233 NI 234
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 110/204 (53%), Gaps = 31/204 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F L VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANG---- 164
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G E L+ L+ YPGGP +PLGLA D E K+KEIKNGRLAM + L
Sbjct: 165 ----------GSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCL 213
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP+ N+ +HL+DP
Sbjct: 214 GFFVQAIVTGKGPVQNLTDHLADP 237
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 127/242 (52%), Gaps = 35/242 (14%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQ-RPTWLPGVD------PPPYL 69
SSF+ +SS + + R+ L V A Q + +W+P V P +L
Sbjct: 13 SSFLTGG-KRSSTALGNGVGTGAQRVGRKTLIVVAAAAQPKKSWIPAVKGGGNFLDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+ W
Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGVP----W 125
Query: 130 YEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE----GSFFGLE 180
+EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E S
Sbjct: 126 FEAGAQPEAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAEN 182
Query: 181 AALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGRLAMVAMLGIFV 231
A + GYPGG +PLGLA D+ KL EIK+ RLAM+AML +
Sbjct: 183 FANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDVEKLERLKLAEIKHSRLAMLAMLIFYF 242
Query: 232 QA 233
+A
Sbjct: 243 EA 244
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 111/217 (51%), Gaps = 28/217 (12%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R WLPG P YLDG+ GDFGFDPLGLGE P++L + ++EL+H R+AM V G
Sbjct: 44 RVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPG 103
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFAST-------RTLFIVQLLLMGFAETKRYMDY 164
L + L + E W + + T + ++ + + F E++R
Sbjct: 104 CLIPEALGLGNWVEAQQWAATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRRIG-- 161
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
P ++ ++ YPGG +PLG +KD + E+KLKE+KNGRLA++
Sbjct: 162 -VPSAEKRK----------------YPGG-AFDPLGFSKDPKKFEEFKLKEVKNGRLALL 203
Query: 225 AMLGIFVQASV-THVGPIDNILEHLSDPWHKTIIQTL 260
A LG QA+ GP+ N+ HL+DPWH I +
Sbjct: 204 AFLGFCAQAAAYPGTGPLQNLATHLADPWHNNIANII 240
>gi|361067651|gb|AEW08137.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160502|gb|AFG62791.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160504|gb|AFG62792.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160506|gb|AFG62793.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160508|gb|AFG62794.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
Length = 132
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNP 198
A TLF++++ LMGFAE +R DY +PGS K+ F GLE L G P YPGGPL NP
Sbjct: 8 ADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQ-YFLGLEKYLGGSGNPAYPGGPLFNP 66
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
LG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP++ I+
Sbjct: 67 LGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPFNNNILT 126
Query: 259 TL 260
L
Sbjct: 127 NL 128
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 27 SSIGITSAFLPA-KSGTTRRYLATVV---RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S++G+ S P+ +SG + A R W+PG P +LDG+ GDFGFDPL
Sbjct: 13 SAVGVPSLLAPSSRSGRLAPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 72
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF--- 139
GL PE+ + ++E+ H R+AM V GIL + L + + W + +
Sbjct: 73 GLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGA 132
Query: 140 ----ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 133 PVPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-A 172
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHK 254
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHN 232
Query: 255 TI 256
I
Sbjct: 233 NI 234
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 126/239 (52%), Gaps = 28/239 (11%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD------PPPYL 69
SSSF+ NKS + + G TV+ A + +W+P V P +L
Sbjct: 13 SSSFLTGG-NKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWL 71
Query: 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
DG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W
Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP----W 125
Query: 130 YEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 186
+EAGA A S TL QL+LMG+ E+KR++D+ P SQ+ E + + A
Sbjct: 126 FEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFAN 185
Query: 187 ---EPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAMVAMLGIFVQA 233
E GYPGG +PL LA + N K+ EIK+ RLAM+AML + +A
Sbjct: 186 FTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 28/206 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG P YLDG+ GDFGFDPL LGE PE+L + ++EL+H R+AM V GIL + L
Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 108
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ +++ L + F E +R M+ +
Sbjct: 109 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEK 165
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
K+ YPGG +PLG +KD + E+K+KE+KNGRLA++A +GI V
Sbjct: 166 KK----------------YPGG-AFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVV 208
Query: 232 QASV-THVGPIDNILEHLSDPWHKTI 256
Q + GP++N+ HL+DPWH I
Sbjct: 209 QQTAYPGTGPLENLATHLADPWHNNI 234
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 128/264 (48%), Gaps = 47/264 (17%)
Query: 24 VNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
++KS AF G +T+ ++ +P + P +L G GD+GFD G
Sbjct: 1 MDKSESTCQRAFSAVLFGAEMSKFSTMRFDAEQKGPVP-YEYPAHLTGEYPGDYGFDIAG 59
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVE----- 136
LG DP + Y E++H R+AM G++ +LL + G+ PVW++ G +
Sbjct: 60 LGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDT 119
Query: 137 --------FKFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 185
F+ A + + ++ Q LLM E RY +E
Sbjct: 120 LDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARY-------------------CGIEA 160
Query: 186 LEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
LEP YPGG L +PLGL+KD + K+KEIKNGRLAMVA LG ++QA+VT
Sbjct: 161 LEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVT 220
Query: 237 HVGPIDNILEHLSDPWHKTIIQTL 260
GPI N++EHLSDP H I+ +
Sbjct: 221 GKGPIQNLVEHLSDPLHNNILSSF 244
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 112/206 (54%), Gaps = 28/206 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W+PG PPYLDG+ GDFGFDPL LGE PE+L Y ++EL+H R+AM V G+L + L
Sbjct: 5 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL 64
Query: 119 RVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W G + + + T+ ++ L + F E +R M+ ++
Sbjct: 65 GLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK---DTEK 121
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
K+ YPGG +PLG +KD E+K+KEIKNGRLA++A +G V
Sbjct: 122 KK----------------YPGG-AFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCV 164
Query: 232 QASV-THVGPIDNILEHLSDPWHKTI 256
Q S GP++N+ HL+DPWH I
Sbjct: 165 QQSAYPGTGPLENLASHLADPWHNNI 190
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 123/242 (50%), Gaps = 32/242 (13%)
Query: 27 SSIGITSAFLPA-KSGTTRRYLATVV---RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPL 82
S++G+ S P+ +SG + A R W+PG P +LDG+ GDFGFDPL
Sbjct: 13 SAVGVPSLLAPSSRSGRLAPFCANATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPL 72
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF--- 137
GL PE+ + ++E+ H R+AM V GIL + L + + W G +
Sbjct: 73 GLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGA 132
Query: 138 --KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
+ + T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 133 PVPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-A 172
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHK 254
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHN 232
Query: 255 TI 256
I
Sbjct: 233 NI 234
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 124/256 (48%), Gaps = 55/256 (21%)
Query: 34 AFLPAKSGTTRRYLATVVRAQQRPTWLPGV-----------------------DPPPYLD 70
AF AKS R LA+ V+ + R T P +PP YL
Sbjct: 2 AFALAKSSLAPRCLASTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLT 61
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVW 129
G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL +G + VW
Sbjct: 62 GEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVW 121
Query: 130 YEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKEGS 175
++AGA F L VQ++LMG E R ++ G
Sbjct: 122 FKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR----VNGGP------ 171
Query: 176 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 235
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA V
Sbjct: 172 ------AGEGLDPLYPGESF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIV 224
Query: 236 THVGPIDNILEHLSDP 251
T GPI N+ +HLS+P
Sbjct: 225 TGKGPIQNLDDHLSNP 240
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 122/241 (50%), Gaps = 31/241 (12%)
Query: 27 SSIGITSAFLPAKSGT---TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S++G+ S P+ + + Y T R W+PG P +LDG+ GDFGFDPLG
Sbjct: 10 SAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLG 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW-YEAGAVE------ 136
L PE+ + ++E+ H R+AM V G+L + L + + W E G
Sbjct: 70 LATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNP 129
Query: 137 FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLL 196
+ + T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 130 VPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AF 169
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKT 255
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HLSDPWH
Sbjct: 170 DPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNN 229
Query: 256 I 256
I
Sbjct: 230 I 230
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 110/204 (53%), Gaps = 31/204 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F L VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANG---- 164
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G E L+ L+ YPGGP +PLGLA D E K+KEIKNGRLAM + L
Sbjct: 165 ----------GSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCL 213
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP+ N+ +HL+DP
Sbjct: 214 GFFVQAIVTGKGPVQNLTDHLADP 237
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 110/204 (53%), Gaps = 31/204 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DP++ Y + EL+HAR+A+ G GIL +LL + G
Sbjct: 49 DTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
++ PVW++AGA F L VQ++LMG AE R
Sbjct: 109 VQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANG---- 164
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G E L+ L+ YPGGP +PLGLA D E K+KEIKNGRLAM + L
Sbjct: 165 ----------GSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCL 213
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP+ N+ +HL+DP
Sbjct: 214 GFFVQAIVTGKGPVQNLTDHLADP 237
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 110/216 (50%), Gaps = 33/216 (15%)
Query: 53 AQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
+ RP WL + P YL G GD+G+D GL DPE+ Y + E++HAR+AM G
Sbjct: 21 GEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGAL 80
Query: 111 GILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGF 155
G L +LL G+ VW++AGA F S + Q+LLMG
Sbjct: 81 GCLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQVLLMGA 140
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E R Y PG EGL+ YPGG +PLGLA D E K+KE
Sbjct: 141 IEGYRV--YGGPGG--------------EGLDKVYPGGDYFDPLGLADDPDTFAELKVKE 184
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
IKNGRLAM +M G FVQA VT GP++N+ HL+DP
Sbjct: 185 IKNGRLAMFSMFGFFVQAIVTGKGPLENLESHLADP 220
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 104/169 (61%), Gaps = 13/169 (7%)
Query: 103 RFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLM 153
R AM GV G++ +LL G+ +P W++ G + +A TLF+ +L L+
Sbjct: 2 RTAMMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADPYTLFVFELALV 60
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREW 211
GFAE +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG K +E
Sbjct: 61 GFAEHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKEL 119
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KLKEIKNGRLAM+A LG VQA T VGP+ N+L+HL+DP H I+ +L
Sbjct: 120 KLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 168
>gi|162461245|ref|NP_001105375.1| light harvesting chlorophyll a/b binding protein6 precursor [Zea
mays]
gi|733458|gb|AAA64416.1| chlorophyll a/b-binding apoprotein CP24 precursor [Zea mays]
Length = 247
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 116/211 (54%), Gaps = 27/211 (12%)
Query: 44 RRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
RR L A + +W+P + PP+LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 31 RRALVVAAAAAAKKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 90
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGF 155
+++H R+AMA V GI +GI W+EAGA + A S +L QLLLMG+
Sbjct: 91 DVIHGRWAMAAVLGIFVGQAW--SGI----PWFEAGADPTRIAPFSFGSLLGTQLLLMGW 144
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLLNPLGLA--------- 202
E+KR++D+ +P SQ E + A E GYPGG +PL LA
Sbjct: 145 VESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLALAGTSRDGVYI 204
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
D+ KL EIK+ R+AM+AML + +A
Sbjct: 205 PDVDKLERLKLAEIKHARIAMLAMLAFYFEA 235
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 116/231 (50%), Gaps = 48/231 (20%)
Query: 56 RPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP WL + D P +L G GD+GFD LGL DP + Y E++HAR+AM G++
Sbjct: 131 RPKWLGPIPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVV 190
Query: 114 FTDLL-RVTGIR-ELPVWYEAGAVEFK-------------FASTRTLFIV---QLLLMGF 155
+LL R G++ PVW++ G + + A + + ++ Q++LM
Sbjct: 191 IPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLG 250
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIR 206
E RY +E LEP YPGG L +PLGL KD
Sbjct: 251 PEYARY-------------------CGIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAA 291
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
+ K+KE+KNGRLAMVA LG +VQA VT GPIDN+ + L DP H+ +
Sbjct: 292 AFEDLKVKEMKNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLHQNLF 342
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 28/217 (12%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
R W+PG P YLDG+ GDFGFDPLGL E PE+ Y ++EL+H R+AM V G
Sbjct: 41 RVSMSSEWMPGQPRPAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPG 100
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDY 164
+L + L + W + + + + ++ L + F E KR +
Sbjct: 101 VLIPEALGLGNWVSAQQWAATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEE- 159
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
P + ++ YPGGP +PLG AKD + E+KLKE+KNGRLA++
Sbjct: 160 --PDHEKRK----------------YPGGP-FDPLGFAKDPKKLEEYKLKELKNGRLALL 200
Query: 225 AMLGIFVQA-SVTHVGPIDNILEHLSDPWHKTIIQTL 260
A LG VQA + GP++N+ HLS+PW I +
Sbjct: 201 AFLGFSVQAIAYPGTGPLENLASHLSNPWANNIANII 237
>gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein, partial [Vitis vinifera]
Length = 166
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 128 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 186
V+ AG + +A TLF+ ++ LMGFAE +R+ D+ +PGS K+ F GLE L G
Sbjct: 31 VFPPAGTYNY-WADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ-YFLGLEKYLGGSG 88
Query: 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 246
+P YPGGPL NPLG KD ++ ++ KLKE+KNGRLAM+A+LG F Q VT VGP+ N+L+
Sbjct: 89 DPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLD 148
Query: 247 HLSDPWHKTIIQTL 260
HL+DP + II +L
Sbjct: 149 HLADPVNNNIITSL 162
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 110/205 (53%), Gaps = 16/205 (7%)
Query: 55 QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+R WL + P YL G AGD+G+D GL DPE+ R Y + EL+HAR+AM G G
Sbjct: 44 ERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGC 103
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ +LL G+ VW++AGA F+ + +L Q +L A M +
Sbjct: 104 ITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLV- 162
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
EG A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 163 ------EGYRVNGGPAGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 215
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI N+ HLSDP
Sbjct: 216 FGFFVQAIVTGQGPIANLDAHLSDP 240
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 44 RRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+ + AQ + +W+P V P +LDG+L GDFGFDPLGLG+DP L+WY +A
Sbjct: 38 KTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 97
Query: 98 ELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLL 152
EL+H R+AMA V GI +G+ W+EAGA F F S L QLLL
Sbjct: 98 ELIHGRWAMAAVLGIFVGQAW--SGV----PWFEAGADPRAIAPFSFGS---LLGTQLLL 148
Query: 153 MGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
MG+ E+KR++D+ +P SQ+ E S A + GYPGG +PLGLA R+
Sbjct: 149 MGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDG 208
Query: 209 ---------REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ RLAM+AML + +A
Sbjct: 209 VYEPDREKLERLKLAEIKHSRLAMLAMLIFYFEA 242
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 108/202 (53%), Gaps = 30/202 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G + L R G++
Sbjct: 259 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 318
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
P+W++AGA F S + Q+LLMG E R
Sbjct: 319 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-------AG 371
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
T G F E L+ YPGGP +PLGLA D E K+KEIKNGRLAMVAMLG
Sbjct: 372 NTAPGQFG------EDLDRLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMVAMLGF 424
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+ QA VT GP++N L HL DP
Sbjct: 425 YAQAIVTGEGPVENWLYHLQDP 446
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 115/204 (56%), Gaps = 33/204 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT---G 122
PPYL+G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G++F + L
Sbjct: 16 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 75
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
I E PVW++AGA F + +++ ++ Q+LLMG AE R +
Sbjct: 76 IAE-PVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGN----- 129
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL + L+ YPGGP +PLGLA D E K+KEIKNGRLAM AM G
Sbjct: 130 ---------GLGNFGKDLDSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAMFAMFG 179
Query: 229 IFVQASVTHVGPIDNILEHLSDPW 252
+VQA VT P++N+ HL+ P+
Sbjct: 180 FYVQAIVTGESPLENLSAHLASPF 203
>gi|194701622|gb|ACF84895.1| unknown [Zea mays]
Length = 149
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 1 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 60 NPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 112
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
L +Q +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 113 FLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 148
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 108/202 (53%), Gaps = 30/202 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G + L R G++
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
P+W++AGA F S + Q+LLMG E R
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-------AG 114
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
T G F E L+ YPGGP +PLGLA D E K+KEIKNGRLAMVAMLG
Sbjct: 115 NTAPGQFG------EDLDRLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMVAMLGF 167
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+ QA VT GP++N L HL DP
Sbjct: 168 YAQAIVTGEGPVENWLYHLQDP 189
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 108/202 (53%), Gaps = 30/202 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G + L R G++
Sbjct: 486 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 545
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
P+W++AGA F S + Q+LLMG E R
Sbjct: 546 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-------AG 598
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
T G F E L+ YPGGP +PLGLA D E K+KEIKNGRLAM+AMLG
Sbjct: 599 NTAPGQFG------EDLDRLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMMAMLGF 651
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+ QA VT GP++N L HL DP
Sbjct: 652 YAQAIVTGEGPVENWLYHLQDP 673
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 115/204 (56%), Gaps = 33/204 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT---G 122
PPYL+G L GD+G+D GLG DP +L+ Y +AEL+H R+AM G G++F + L
Sbjct: 243 PPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIP 302
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
I E PVW++AGA F + +++ ++ Q+LLMG AE R +
Sbjct: 303 IAE-PVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGN----- 356
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL + L+ YPGGP +PLGLA D E K+KEIKNGRLAM AM G
Sbjct: 357 ---------GLGNFGKDLDSLYPGGP-FDPLGLANDPDTLAELKVKEIKNGRLAMFAMFG 406
Query: 229 IFVQASVTHVGPIDNILEHLSDPW 252
+VQA VT P++N+ HL+ P+
Sbjct: 407 FYVQAIVTGESPLENLSAHLASPF 430
>gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thaliana]
Length = 148
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D
Sbjct: 1 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIK 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
+PGS ++ F + +L E GYPGG + NPL A +E K KE+ NGRLAM+A
Sbjct: 60 NPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLA 112
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
LG VQ +VT GP +N+L+HLSDPWH TI+QT
Sbjct: 113 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 147
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 115/236 (48%), Gaps = 48/236 (20%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP W + D PPYL G L GD+GFD GLG+D + Y E++HAR+AM G
Sbjct: 109 KERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALG 168
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL----------------FIVQLLLM 153
L ++ +TG PVW+ G + + + L I Q+LLM
Sbjct: 169 ALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLM 228
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L++D
Sbjct: 229 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGTLFDPLNLSED 269
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ K+KEIKNGRLAMVA LG + QA+ T GP+ N+++H+SDP H +I L
Sbjct: 270 PVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 112/216 (51%), Gaps = 28/216 (12%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIKMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNGRL
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 AMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
A++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 198 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 105/200 (52%), Gaps = 28/200 (14%)
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
WLPG D P +L L G++GFDPL LG+DP SL+ + ++E++H R+AM GVAG L +L
Sbjct: 2 NWLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVEL 61
Query: 118 LRVTGIRELPVWYEAGAVEFKFA-----STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
L + P+W G F TL + + M AE +R
Sbjct: 62 LGYGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQR------------ 109
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
G G+ YPGG +PLG AKD + E KLKE+KNGRLAMVA LG Q
Sbjct: 110 -GDAGGVV---------YPGG-AFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQ 158
Query: 233 ASVTHVGPIDNILEHLSDPW 252
+ T GPI + EHLS+PW
Sbjct: 159 HAATGKGPIAALGEHLSNPW 178
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 117/208 (56%), Gaps = 31/208 (14%)
Query: 48 ATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVH 101
A VV A++ +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H
Sbjct: 42 ALVVSAKK--SWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 99
Query: 102 ARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETK 159
R+AMA V GI +G+ W+EAGA A S +L QLLLMG+ E+K
Sbjct: 100 GRWAMAAVLGIFVGQAW--SGVP----WFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESK 153
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLAKDIRNA------ 208
R++D+ +P SQ E + A E E GYPGG +PLGL + R+
Sbjct: 154 RWVDFFNPDSQAVEWATPWSRTA-ENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDT 212
Query: 209 ---REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ RLAM+AML + +A
Sbjct: 213 DKLDRLKLAEIKHARLAMLAMLIFYFEA 240
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 101 IHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWASQVGLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 30/210 (14%)
Query: 51 VRAQQRPT-WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
V+A P WLPG +PP YLDGT+AGD+GFDPL LG++ E+L + +AEL++ R+AM
Sbjct: 26 VKAAAGPQHWLPGSEPPAYLDGTMAGDYGFDPLRLGQNAETLPYLQEAELMNGRWAMHAT 85
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
AGILFTD + LP ++EAG +TL +Q+++MGF E R + + G
Sbjct: 86 AGILFTDAVG------LPKFWEAGDAALGDWDLKTLVAIQVVVMGFLEAARIRGFYATGE 139
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G+F P P G +++ K+KEIKNGRLAM++ LG+
Sbjct: 140 SGVVGNF-----------PFDPSG------------QDSPAMKVKEIKNGRLAMMSFLGM 176
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
Q +VT P++ + H+++P I +
Sbjct: 177 VSQYAVTGTSPLEGLKAHMANPTQVNIFTS 206
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 112/216 (51%), Gaps = 28/216 (12%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
M+ + K+ YPGG +PLG +KD + E K+KEIKNGRL
Sbjct: 158 MEK---DPEKKK----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRL 197
Query: 222 AMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
A++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 198 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 115/201 (57%), Gaps = 12/201 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTL-FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
P VW++ GA+ TL + + + + + GS+ ++ +
Sbjct: 142 GPEAVWFKTGAL---LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGSE-----YYRITNG 193
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLG F+QA VT GP++
Sbjct: 194 LDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVE 252
Query: 243 NILEHLSDPWHKTIIQTLANS 263
N+ +HLSDP+ ++ +A +
Sbjct: 253 NLAKHLSDPFGNNLLTVIAGT 273
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 101 IHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 109/210 (51%), Gaps = 29/210 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG P YLDG+ GDFGFDPLGLGE PE+L + ++EL+HAR+AM + G+L + L
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL 63
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W + + + + V+ + + F E++R G
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQRN------GESD 117
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
E YPGGP +PLG +K N E KLKEIKNGRLA+VA LG V
Sbjct: 118 PEKR-------------KYPGGP-FDPLGFSKGA-NLEELKLKEIKNGRLALVAFLGFVV 162
Query: 232 QA-SVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA + GP++N+ HL+DPWH TI L
Sbjct: 163 QAVAYPGTGPLENLKTHLADPWHNTIAHVL 192
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 123/228 (53%), Gaps = 27/228 (11%)
Query: 56 RPTWLPG--VDP---PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVA 110
R +LPG +DP P YL+GTLAGD+G+DPLGLG+D ++ Y EL+HAR+AM A
Sbjct: 98 RALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAA 157
Query: 111 GILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLF-----------------IVQLLL 152
GI+ + L+ G + W+E GA E T F ++++ L
Sbjct: 158 GIIIPEGLQANGAAIKGGTWFETGA-EMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVAL 216
Query: 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 212
+G E R PG G F + GL+ YPGGP +PLGLA D E K
Sbjct: 217 LGAVERYRQSGEGPPGYSPGVGKFD--SSIFSGLDNLYPGGP-FDPLGLADDPETFAELK 273
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+KEIKNGRLA++++LG VQ+ VT GP N +H++DP+ ++ +
Sbjct: 274 VKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII 321
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 132/246 (53%), Gaps = 41/246 (16%)
Query: 16 SSSFICNDVNKSSIGITSAFLPAKSG---TTRRYLATVVRAQQRPTWLPGVD------PP 66
SSSF+ K+S + A + A+ G T +R + A ++ +W+P V P
Sbjct: 13 SSSFLTG--GKNSQALLGAPVAARIGGLATPKRCIVAAAAAPKK-SWIPAVKGGGNLLDP 69
Query: 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL 126
+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +GI
Sbjct: 70 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW--SGIP-- 125
Query: 127 PVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
W+EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E + +
Sbjct: 126 --WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKT 180
Query: 182 ALEGL-----EPGYPGGPLLNPLGLA---------KDIRNAREWKLKEIKNGRLAMVAML 227
A E E GYPGG +PL LA D K+ EIK+ RLAM+AML
Sbjct: 181 A-ENFANFTGEQGYPGGKFFDPLSLAGTLQDGVYIPDTEKLERLKVAEIKHARLAMLAML 239
Query: 228 GIFVQA 233
+ +A
Sbjct: 240 IFYFEA 245
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 101 IHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 31/241 (12%)
Query: 27 SSIGITSAFLPAKSGT---TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S++G+ S P+ + + Y T R W+PG P +LDG+ GDFGFDPLG
Sbjct: 10 SAVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLG 69
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW-YEAGAVE------ 136
L PE+ + ++E+ H R+AM V G+L + L + + W E G
Sbjct: 70 LATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAEPGGQATYLGNP 129
Query: 137 FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLL 196
+ + T+ +++ + + FAE +R M+ + K+ YPGG
Sbjct: 130 VPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AF 169
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKT 255
+PLG +KD E+KLKEIKNGRLAM+A + VQ S GP++N+ HLSDPWH
Sbjct: 170 DPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNN 229
Query: 256 I 256
I
Sbjct: 230 I 230
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 134/297 (45%), Gaps = 80/297 (26%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+ +D++ +S T+ F + + TV+ RP W PG P YLDG+L GD+GF
Sbjct: 18 VVSDISSNSSRFTARFGFGTKKASPKKAKTVI--SDRPLWFPGAKSPEYLDGSLVGDYGF 75
Query: 80 DPLGLGE--------------------------------DPES-----------LRWYVQ 96
DP GLG+ DP+S L+ + +
Sbjct: 76 DPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRE 135
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLF 146
EL+H R+AM G + + L TG+ W +AG VE S+ TL
Sbjct: 136 CELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLI 189
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+++L++G+ E +R A L+ + YPGG +PLGLA D
Sbjct: 190 WIEVLVIGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGLASDPV 230
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
+ +L EIK+ RLAMV LG VQA+ T GP++N HLSDP H TII T ++S
Sbjct: 231 KKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 116/236 (49%), Gaps = 48/236 (20%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP W + D PPYL G L GD+GFD GLG+D + Y E++HAR+AM G
Sbjct: 112 KERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALG 171
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL----------------FIVQLLLM 153
L ++L +TG PVW+ G + + + L I Q+LLM
Sbjct: 172 ALIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLM 231
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L++D
Sbjct: 232 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGTLFDPLNLSED 272
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
+ K+KEIKNGRLAMVA LG + QA+ T GP+ N+++H+SDP H ++ L
Sbjct: 273 PVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLLAML 328
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLG 85
+G++ A + + T R ++ RP +L P YL G GD+G+D GL
Sbjct: 28 KVGMSQARITMRR-TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 86
Query: 86 EDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----F 139
DPE+ + E++H R+AM G G +F +LL TG++ VW++AGA F +
Sbjct: 87 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDY 146
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
L Q +L +A M I EG G EGL+P YPGG +PL
Sbjct: 147 LGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPL 198
Query: 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GLA D + E K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 199 GLADDPESFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 126/247 (51%), Gaps = 45/247 (18%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRP--TWLPGVD------PPPY 68
S F+C K S + +A + K G +V P +W+P V P +
Sbjct: 15 SHFLCG--GKRSHALLAAGIGGKVGAVVSPXRVIVAVAAAPKKSWIPAVKGGGNFIDPEW 72
Query: 69 LDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +G+
Sbjct: 73 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW--SGVP---- 126
Query: 129 WYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE--------GS 175
W+EAGA F F S L QLLLMG+ E+KR++D+ +P SQ+ E
Sbjct: 127 WFEAGADPNAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAE 183
Query: 176 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIKNGRLAMVAM 226
FG E GYPGG +PLG A I++ KL EIK+ R+AM+AM
Sbjct: 184 NFGNSTG----EQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLTEIKHARIAMLAM 239
Query: 227 LGIFVQA 233
L + +A
Sbjct: 240 LIFYFEA 246
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL TG++
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKF 126
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 127 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGG 179
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT G
Sbjct: 180 GPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 240 PIDNILEHLSDP 251
PI+N+ +HL+DP
Sbjct: 239 PIENLFDHLADP 250
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + ++ ++ + L
Sbjct: 142 GPEAVWFKTGALLLD-GNTLNYFGKNIPI------NLVLAVVAEVVLLGGAEYYRITNGL 194
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLG F+QA VT GP++N
Sbjct: 195 DFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVEN 253
Query: 244 ILEHLSDPWHKTIIQTLANS 263
+ +HLSDP+ ++ +A +
Sbjct: 254 LAKHLSDPFGNNLLTVIAGT 273
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 113/203 (55%), Gaps = 35/203 (17%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P PP+LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V
Sbjct: 49 KKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
Query: 110 AGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
GI +GI W+EAGA F F S L QLLLMG+ E+KR++D+
Sbjct: 109 LGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
Query: 165 ISPGSQTKEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLA---------KDIRNARE 210
+P SQ+ E + A E + GYPGG +PLGLA D+
Sbjct: 160 FNPDSQSVEWATPWSRTA-ENFANFTGDQGYPGGKFFDPLGLAGTVKDGVYVPDVEKLER 218
Query: 211 WKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ R+AM+AML + +A
Sbjct: 219 LKLAEIKHARIAMLAMLVFYFEA 241
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 107/206 (51%), Gaps = 31/206 (15%)
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P + P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL
Sbjct: 42 PFTESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK 101
Query: 121 TGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYI 165
G+ VW++AGA F S Q++LMG AE R
Sbjct: 102 NGVSFGEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYR----- 156
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
EG +EGL+ YPGGP +PLGLA D E K KEIKNGRLAM +
Sbjct: 157 ----ANGEGP------GVEGLDSLYPGGPF-DPLGLADDPDTFAELKTKEIKNGRLAMFS 205
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDP 251
M G FVQA VT GPI+N+ +HL+DP
Sbjct: 206 MFGFFVQAIVTGKGPIENLSDHLADP 231
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 32/245 (13%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+C S+ +A +P G T + R W+PG P YLDG+ GDFGF
Sbjct: 14 VCPSFLSSTKSKFAAAMPVYVGATN----FMSRFSMSADWMPGQPRPSYLDGSAPGDFGF 69
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF 137
D LGLGE P +L Y ++EL+H R+AM V GI+ + L + + W G +
Sbjct: 70 DSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129
Query: 138 -----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
+ + T+ ++ L + F E +R M+ S+ K+ YPG
Sbjct: 130 LGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKK----------------YPG 170
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDP 251
G +PLG +KD E K+KEIKNGRLA++A++G VQ S GP++N+ HL+DP
Sbjct: 171 G-AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229
Query: 252 WHKTI 256
WH I
Sbjct: 230 WHNNI 234
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 121/236 (51%), Gaps = 48/236 (20%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GL +D + + Y E++HAR+AM G
Sbjct: 110 EERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALG 169
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTRTLFIV---QLLLM 153
L ++L ++G PVW+ G + K FA ++ + ++ Q LLM
Sbjct: 170 ALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLM 229
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGGPL +PL L+ D
Sbjct: 230 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGPLFDPLNLSSD 270
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E K+KEIKNGRLAMVA LG + QA++T GP+ N++EH+SDP+H ++ L
Sbjct: 271 AVALEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNNLLCVL 326
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 115/201 (57%), Gaps = 12/201 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 126 LP--VWYEAGAVEFKFASTRTL-FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
P VW++ GA+ TL + + + + + G++ ++ +
Sbjct: 142 GPEAVWFKTGAL---LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAE-----YYRITNG 193
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLG F+QA VT GP++
Sbjct: 194 LDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVE 252
Query: 243 NILEHLSDPWHKTIIQTLANS 263
N+ +HLSDP+ ++ +A +
Sbjct: 253 NLAKHLSDPFGNNLLTVIAGT 273
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 118/235 (50%), Gaps = 34/235 (14%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G + R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG++P SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F L + + M AE +R G G+ YPGG +
Sbjct: 124 PF-DLNALLAFEFVAMAAAEGQR-------------GDAGGVV---------YPGG-AFD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
PLG AKD + E KLKEIKNGRLAMVA LG Q + T GPI + EHL++PW
Sbjct: 160 PLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLANPW 214
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 129/266 (48%), Gaps = 38/266 (14%)
Query: 3 VAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPA-KSGTT----RRYLATVVRAQQRP 57
++ R + SSS C S++G+ S P+ +SG + Y T R
Sbjct: 17 ASIERATMAMASSSGLRSC-----SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSA 71
Query: 58 TWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
W PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V G+L +
Sbjct: 72 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEA 131
Query: 118 LRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
L + + W G + + + T+ ++ L + FAE +R M+ +
Sbjct: 132 LGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPE 188
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
K+ YPGG +PLG +KD E KLKEIKNGRLAM+A +G
Sbjct: 189 KKK----------------YPGG-AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFC 231
Query: 231 VQASV-THVGPIDNILEHLSDPWHKT 255
VQ S GP++N+ HL+DPWH T
Sbjct: 232 VQQSAYPGTGPLENLATHLADPWHNT 257
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 11/173 (6%)
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE 136
DP G G E RW E+++ RFAM G G + + L G+ W++ G +
Sbjct: 2 DPEGTGGFIEP-RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 60
Query: 137 -----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGY 190
+A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE G P Y
Sbjct: 61 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAY 119
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
PGGP NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N
Sbjct: 120 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 116/230 (50%), Gaps = 34/230 (14%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDP 88
SA A G + R +A V + WLPG D P +L L G++GFDPL LG++P
Sbjct: 5 SARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEP 64
Query: 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEFKFAST 142
SL+ + ++E++H R+AM GVAG L +LL + P+W G +E F
Sbjct: 65 ASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPF-DL 123
Query: 143 RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
L + + M AE +R G G+ YPGG +PLG A
Sbjct: 124 NALLAFEFVAMAAAEGQR-------------GDAGGVV---------YPGG-AFDPLGFA 160
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
KD + E KLKEIKNGRLAMVA LG Q + T GPI + EHL++PW
Sbjct: 161 KDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLANPW 210
>gi|255642841|gb|ACU22606.1| unknown [Glycine max]
Length = 150
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 97/155 (62%), Gaps = 8/155 (5%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 1 MLGVAGMLLPEVFTKIGIINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
+PGS ++ F + +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 60 NPGSVNQDPIF--KQYSLPQHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 112
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
LG VQ +VT GP +N+L+HLSDPWH TII T+
Sbjct: 113 FLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTI 147
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 120/216 (55%), Gaps = 21/216 (9%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
R +LPG D P YLDGTLAGD+GFDPLGLG D +++ Y AE++HAR+AM +
Sbjct: 106 DRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAI 164
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRY 161
G++ + L + G VW E G V + R F+ VQ+ LM E R
Sbjct: 165 PGVVIPEALGLPGG----VWTETGKVFLDGETGRPFFLENPIVFAAVQVALMAGVEQFRS 220
Query: 162 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 221
G +G F E+A +GL+P PGGPL + +A + ++ K+KEIKNGRL
Sbjct: 221 SGEGPAGFVPFKGKF--DESAFKGLDPINPGGPL-DFFNVASNPQDLALLKVKEIKNGRL 277
Query: 222 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
AM+AMLG+FVQ T GP N +H++DP+ +
Sbjct: 278 AMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFV 313
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 108/201 (53%), Gaps = 30/201 (14%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG PP +LD T+ GD+GFDPL LG + E L WY +AEL + R+AM VAGILFTD
Sbjct: 45 WYPGATPPAHLDSTMPGDYGFDPLRLGTNTELLPWYREAELTNGRWAMMAVAGILFTDAF 104
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP ++ AGA ++ L +++ LM E +R+ + +T + F
Sbjct: 105 ------GLPKFWLAGAEKYAIGFA-PLVAIEIALMAVLEYQRFKGW----KETGKSGFLA 153
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
+P +PL +A D E KEIKNGRLAM+A LG QA+V +
Sbjct: 154 F----------FP----FDPLNMASD-----EMAFKEIKNGRLAMIAFLGFCSQAAVRGM 194
Query: 239 GPIDNILEHLSDPWHKTIIQT 259
GPI+ + H++DPW+ I +
Sbjct: 195 GPIECLKMHIADPWNNNIFTS 215
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 118/221 (53%), Gaps = 19/221 (8%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVD--PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQA 97
+GT+ R + +R WL + P YL G GD+G+D GL DPE+ + Y +
Sbjct: 44 NGTSERL--SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYREL 101
Query: 98 ELVHARFAMAGVAGILFTDLLRVTG--IRELPVWYEAGAVEFK-----FASTRTLFIVQL 150
EL+HAR+AM G G + +LL G I E PVW++AGA F+ + L Q
Sbjct: 102 ELIHARWAMLGALGCVTPELLAKNGTPIAE-PVWFKAGAQIFQEGGLDYLGNPGLVHAQS 160
Query: 151 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 210
+L A M I EG A EGL+ +PGGP +PL LA+D E
Sbjct: 161 ILATLACQVILMGAI-------EGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAE 213
Query: 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
K+KEIKNGRLAM +M G FVQA VT GPI+N+ HL++P
Sbjct: 214 LKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIENLESHLANP 254
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 137/256 (53%), Gaps = 31/256 (12%)
Query: 1 MAVAVGRGFLLQPSSSSSFICN-DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTW 59
MA A G +L SSF+C + +++ + + + + +R + A + +W
Sbjct: 1 MAAAATSGAVLN-GLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSW 59
Query: 60 LPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
+P V P +LDG+L GDFGFDPLGLG+DP L+WY +AEL+H R+AMA V GI
Sbjct: 60 IPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 119
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+G+ W+EAGA A S +L QL+LMG+ E+KR++D+ +P SQ+
Sbjct: 120 VGQAW--SGVP----WFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQS 173
Query: 172 KEGSFFGLEAALEGL-----EPGYPGGPLLNPLGLAKDIRNA---------REWKLKEIK 217
E + + A E + GYPGG +PL LA +++ KL EIK
Sbjct: 174 VEWATPWSKTA-ENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIK 232
Query: 218 NGRLAMVAMLGIFVQA 233
+ RLAM+AML + +A
Sbjct: 233 HARLAMLAMLIFYFEA 248
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 55 QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
R WL P YL G AGD+G+D GL DPE+ R Y + EL+HAR+AM G G
Sbjct: 43 NRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGC 102
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYIS 166
+ +LL G+ VW++AGA F+ + +L Q +L A M +
Sbjct: 103 ITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLV- 161
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
EG A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 162 ------EGYRVNGGPAGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 214
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI N+ HLSDP
Sbjct: 215 FGFFVQAIVTGQGPIANLDAHLSDP 239
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 115/212 (54%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 81 PAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 140
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R ++ +
Sbjct: 141 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVVAVIAEVVLLGGAEYYRIINGLD----- 194
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLA D A K KEIKNGRLAM AMLG F+
Sbjct: 195 -------LEDKL------HPGGPF-DPLGLASDPDQAAILKAKEIKNGRLAMFAMLGFFL 240
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ +++S
Sbjct: 241 QAYVTGEGPVENLSKHLSDPFGNNLLTVISSS 272
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 114/212 (53%), Gaps = 20/212 (9%)
Query: 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-E 125
P L+GTL GD+G+DPLGL +D E+L Y EL+HAR+AM AG + + L G +
Sbjct: 69 PLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLAAAGAIIPEGLAANGADVK 128
Query: 126 LPVWYEAGAVEFK-------------FASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
W+E GA ++ LF+V + LMG AE R G
Sbjct: 129 GATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVALMGAAENYRRTGEGPAGY 188
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G F E+A + ++ YPGGP +PLGLA D E K+KEIKNGRLAMV+ LG
Sbjct: 189 SPGVGKFD--ESAYDSMDSLYPGGPF-DPLGLADDPEVLAELKVKEIKNGRLAMVSFLGF 245
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
VQA+VT GP N +H++DP+ ++ LA
Sbjct: 246 AVQAAVTGEGPYANWSKHVADPFGYNLLTILA 277
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 122/233 (52%), Gaps = 17/233 (7%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGL 84
S +G + A + + T R ++ RP +L P YL G GD+G+D GL
Sbjct: 27 SKVGASQARITMRR-TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 85
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK----- 138
DPE+ + E++H+R+AM G G +F +LL TG++ VW++AGA F
Sbjct: 86 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLD 145
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
+ L Q +L +A M I EG G EGL+P YPGG +P
Sbjct: 146 YLGNPNLIHAQSILAIWAFQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDP 197
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
LGLA D E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 198 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 112/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 94 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANC 153
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F I +++L+G AE R ++ +
Sbjct: 154 GPEAVWFKTGALLLD-GGTLNYFGNSIPINLVVAVIAEVVLLGGAEYYRIINGLD----- 207
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLAKD A K+KEIKNGRLAM AMLG +
Sbjct: 208 -------LEDKL------HPGGPF-DPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYF 253
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ LA S
Sbjct: 254 QAYVTGEGPVENLAKHLSDPFGNNLLTVLAGS 285
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 132/297 (44%), Gaps = 80/297 (26%)
Query: 20 ICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGF 79
+ +D++ S T+ F + TV+ RP W PG P YLDG+L GD+GF
Sbjct: 18 VVSDISSGSTRFTAWFGFGTKKAAPKKAKTVI--SDRPLWFPGAKSPEYLDGSLVGDYGF 75
Query: 80 DPLGLGE--------------------------------DPES-----------LRWYVQ 96
DP GLG+ DP+S L+ + +
Sbjct: 76 DPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAVDPKSTPFQPYSEVFGLQRFRE 135
Query: 97 AELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLF 146
EL+H R+AM G + + L TG+ W +AG VE S+ TL
Sbjct: 136 CELIHGRWAMLATLGAITVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLI 189
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
+++L++G+ E +R A L+ + YPGG +PLGLA D
Sbjct: 190 WIEVLVVGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGLASDPE 230
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
+ +L EIK+ RLAMV LG VQA+ T GP++N HLSDP H TII T ++S
Sbjct: 231 KKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 44 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKF 103
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 104 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 153
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 154 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFF 206
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL+DP
Sbjct: 207 VQAIVTGKGPIENLFDHLADP 227
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G VE+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKVEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++L+L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIELILFHYVEVRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 113/218 (51%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G LF +LL G++ VW++AGA F + L Q +L
Sbjct: 101 IHCRWAMLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 161 IWACQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWL-PGVDP-PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L P D P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H R+AM G G +F ++L G++ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+P YPGG +PLGLA D
Sbjct: 160 IWACQVVLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 203 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 28/219 (12%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
Y T R W PG P +LDG+ GDFGFDPLGLG PE+ + ++E+ H R+A
Sbjct: 5 YATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWA 64
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAET 158
M V G+L + L + + W V + + T+ ++ + + FAE
Sbjct: 65 MLCVPGVLVPEALGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEH 124
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R M+ + YPGG +PLG +KD E+KLKEIKN
Sbjct: 125 QRTMEKDPEKKK-------------------YPGG-AFDPLGFSKDPVKFEEYKLKEIKN 164
Query: 219 GRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
GRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 165 GRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 203
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 109/210 (51%), Gaps = 29/210 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG P YLDG+ GDFGFDPLGLGE PE+L + ++EL+HAR+AM V G+L + L
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 63
Query: 119 RVTGIRELPVWYEAGAVEFKF-------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
W + + + + V+ + + FAE++R G
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQRN------GESD 117
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
E YPGG +P+G +K N E KLKEIKNGRLA+VA LG +
Sbjct: 118 PEKR-------------KYPGG-AFDPMGFSKGA-NLEELKLKEIKNGRLALVAFLGFAI 162
Query: 232 QA-SVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA + GP++N+ HL+DPWH TI L
Sbjct: 163 QAIAYPGTGPLENLKTHLADPWHNTIANIL 192
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 110/203 (54%), Gaps = 29/203 (14%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G AGD+G+D GL DP++ Y + E++HAR+AM G G + +LL G+
Sbjct: 45 DTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGV 104
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F+ L VQ+LLMG AE+ R + +PG
Sbjct: 105 PFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYR-ANGGAPG 163
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
FG E L+ YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 164 G-------FG-----EDLDSLYPGGAF-DPLGLADDPDTLAELKVKEIKNGRLAMFSMFG 210
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI N+ HLSDP
Sbjct: 211 FFVQAIVTGQGPIANLDAHLSDP 233
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQCSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGVKF 124
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYR---------- 174
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 175 ------IGGGPLGEGLDPLYPGGAF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 227
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP++N+ +HL+DP
Sbjct: 228 VQAIVTGKGPVENLYDHLADP 248
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 121/243 (49%), Gaps = 33/243 (13%)
Query: 27 SSIGITSAFLPA-KSGTT----RRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 70
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W G +
Sbjct: 71 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLG 130
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 131 NPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 170
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 253
+PLG +KD E KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWH 230
Query: 254 KTI 256
I
Sbjct: 231 NNI 233
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 121/236 (51%), Gaps = 48/236 (20%)
Query: 54 QQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
++RP WL + D P YL G L GD+GFD GLG+DP + + Y E++HAR+AM G
Sbjct: 112 EERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALG 171
Query: 112 ILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV---QLLLM 153
L +LL + G PVW+ G + F FA ++ + ++ Q LLM
Sbjct: 172 ALLPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLM 231
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKD 204
E RY +E LEP YPGG L +PL L+KD
Sbjct: 232 VGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDPLNLSKD 272
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E K+KEIKNGRLAMVA LG ++QA+ T GP+ N+L+HL+DP+H ++
Sbjct: 273 PVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADPFHNNLLSIF 328
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 38/226 (16%)
Query: 54 QQRPTWLP-GV----DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
+ R +LP G+ D P YL G + GD+GFDP GL + P Y EL+HAR+AM G
Sbjct: 61 ESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLG 120
Query: 109 VAGILFTDLLRVTGIRELP--VWYEAGAVEFK------FASTRTLFIV-----QLLLMGF 155
AG + + G + P VW++ GA+ F + + +V +++L+G
Sbjct: 121 AAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGG 180
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R ++ + GL+ +PGGP +PLGLAKD N K+KE
Sbjct: 181 AEYYRSINNL-------------------GLDRLHPGGPF-DPLGLAKDPDNFALLKVKE 220
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
IKNGRLAM AMLG F+QA T GP++N+ HLSDP+ ++ +A
Sbjct: 221 IKNGRLAMFAMLGFFIQAYATGEGPVENLTTHLSDPFGNNLLSVIA 266
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 29/193 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WLPG +PP YLDGT+ D+GFDPL LG +PE+L + +AEL++ R+AM AGILFTD +
Sbjct: 44 WLPGTEPPSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATAGILFTDAV 103
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP ++EAG +TL +Q+++MGF E R +++ G G+F
Sbjct: 104 G------LPKFWEAGEAALGDWDLKTLVAIQVVVMGFLEAARIRGFMATGESGVVGNF-- 155
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
P P G +++ K+KE+KNGRLAM++ LG+ Q +VT
Sbjct: 156 ---------PFDPTG------------QDSPAMKVKEVKNGRLAMMSFLGMVSQYAVTGT 194
Query: 239 GPIDNILEHLSDP 251
P++ + H+++P
Sbjct: 195 SPLEGLKAHMANP 207
>gi|296090224|emb|CBI40043.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 111/228 (48%), Gaps = 63/228 (27%)
Query: 43 TRRYLATVVRAQQRPTWLPGVDPP---------PYLDGTLAGDFGFDPLGLGEDPESLRW 93
+R+ + VVRA P G D P YLDG+L GD+GFDPLGL DPE
Sbjct: 31 SRKSSSFVVRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGL-SDPEGTGG 89
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLM 153
+++ P W G V
Sbjct: 90 FIE------------------------------PRWLAYGEVI----------------- 102
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWK 212
R+ D+ +PGS K+ F GLE L G +P YPGGPL NPLG KD ++ ++ K
Sbjct: 103 ----NGRFQDWANPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLK 157
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
LKE+KNGRLAM+A+LG F Q VT VGP+ N+L+HL+DP + II +L
Sbjct: 158 LKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 205
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 121/226 (53%), Gaps = 34/226 (15%)
Query: 32 TSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLG 85
+A L A TRR + A ++ +W+P P +LDG+L GDFGFDPLGLG
Sbjct: 28 NAASLGAAKPVTRRVVVVAAAADKK-SWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLG 86
Query: 86 EDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFA 140
+DP L+WY +AEL+H R+AMA V GI +G+ W+EAGA F F
Sbjct: 87 KDPAFLKWYREAELIHGRWAMAAVLGIFIGQ--AYSGV----PWFEAGAQPGAVAPFSFG 140
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGYPGGPLL 196
S L QLLLMG+ E+KR++D+ +P SQ+ E + A E GYPGG
Sbjct: 141 S---LLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANFTGEQGYPGGKFF 197
Query: 197 NPLGLAKDIRNA---------REWKLKEIKNGRLAMVAMLGIFVQA 233
+PLGL + ++ K+ EIK+ RLAM+AML + +A
Sbjct: 198 DPLGLGGETKDGIYIPDTEKLERLKVAEIKHSRLAMLAMLIFYFEA 243
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++HAR+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M +I EG G
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT G
Sbjct: 178 GPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 240 PIDNILEHLSDP 251
P++N+ +HL+DP
Sbjct: 237 PLENLSDHLADP 248
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 108/192 (56%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 179 GPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
P++N+L+HL+DP
Sbjct: 238 PVENLLDHLADP 249
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 113/214 (52%), Gaps = 34/214 (15%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+RP +L +PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 38 ERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC 97
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAE 157
+F +LL G+ VW++AGA F+ S + Q+LLMG E
Sbjct: 98 IFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAIE 157
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G EGL+ YPGG +PLGLA D E K+KEIK
Sbjct: 158 GYRV-----------NGGPLG-----EGLDKLYPGGSF-DPLGLADDPDTFSELKVKEIK 200
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
NGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 201 NGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANP 234
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIIN 53
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 113/214 (52%), Gaps = 34/214 (15%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+RP +L +PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 45 ERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC 104
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAE 157
+F +LL G+ VW++AGA F+ S + Q+LLMG E
Sbjct: 105 IFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIE 164
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G EGL+ YPGG +PLGLA D E K+KEIK
Sbjct: 165 GYRV-----------NGGPLG-----EGLDKLYPGGSF-DPLGLADDPDTFAELKVKEIK 207
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
NGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANP 241
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 116/216 (53%), Gaps = 34/216 (15%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
TRR + A ++ +W+P P +LDG+L GDFGFDPLGLG+DP L+WY
Sbjct: 39 ATRRVVVVAAAAAKK-SWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYR 97
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQL 150
+AEL+H R+AMA V GI +G+ W+EAGA F F S L QL
Sbjct: 98 EAELIHGRWAMAAVLGIFVGQ--AYSGV----PWFEAGAQPGAVAPFSFGS---LLGTQL 148
Query: 151 LLMGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIR 206
LLMG+ E+KR++D+ +P SQ E S A + GYPGG +PLGL D +
Sbjct: 149 LLMGWVESKRWVDFFNPDSQAVEWATPWSRTADNFANSTGDQGYPGGKFFDPLGLGGDTK 208
Query: 207 NA---------REWKLKEIKNGRLAMVAMLGIFVQA 233
+ KL EIK+ RLAM+AML + +A
Sbjct: 209 DGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 244
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 229 VQAIVTGKGPIENLFDHVADP 249
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 224
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 60 KPGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 117
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 118 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 153
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M ++ EG G
Sbjct: 126 GESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA +T G
Sbjct: 179 GPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIITGKG 237
Query: 240 PIDNILEHLSDP 251
PI+N+L+HL+DP
Sbjct: 238 PIENLLDHLADP 249
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 111/211 (52%), Gaps = 32/211 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 90 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 149
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + + +++L+G AE R ++ +
Sbjct: 150 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVGGAEYYRIINGLD------ 203
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
LE L +PGGP +PLGLAKD A K+KEIKNGRLAM AMLG + Q
Sbjct: 204 ------LEDKL------HPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQ 250
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 251 AYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 281
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 112/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F + +++L+G AE R ++ +
Sbjct: 149 GPEAVWFKTGALLLD-GGTLNYFGKPIPINFILAVVAEIVLVGGAEYYRIINGLD----- 202
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLAKD A K+KEIKNGRLAM AMLG +
Sbjct: 203 -------LEDKL------HPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYF 248
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 249 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 280
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 117/233 (50%), Gaps = 41/233 (17%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWY 94
PAKS Y R WL + P YL G GD+G+D GL DPE+ + Y
Sbjct: 31 PAKSAGIEWY------GPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKY 84
Query: 95 VQAELVHARFAMAGVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFKFASTRTL------- 145
+ E++HAR+A+ G GIL +LL G++ PVW++AGA F L
Sbjct: 85 RELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIH 144
Query: 146 -------FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
VQ++LMG E R ++ G A EGL+P YPG +P
Sbjct: 145 AQNIVATLAVQVVLMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDP 187
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
LGLA D E K+KEIKNGRLAM + G FVQA VT GPI N+ +HL+DP
Sbjct: 188 LGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 111/211 (52%), Gaps = 32/211 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + + +++L+G AE R ++ +
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVGGAEYYRIINGLD------ 202
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
LE L +PGGP +PLGLAKD A K+KEIKNGRLAM AMLG + Q
Sbjct: 203 ------LEDKL------HPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQ 249
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 250 AYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 280
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 125/254 (49%), Gaps = 34/254 (13%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGT 72
++SF+ + + G+ + T + ++ RP +L P YL G
Sbjct: 8 QTTSFLGQALVSRAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGE 67
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYE 131
GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW++
Sbjct: 68 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFK 127
Query: 132 AGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
AGA F S ++ Q++LMGF E R
Sbjct: 128 AGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----------------V 171
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
G EGL+ YPGG +PLGLA D A E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 172 GGGPLGEGLDKVYPGGAF-DPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTG 230
Query: 238 VGPIDNILEHLSDP 251
GPI+N+ +H++DP
Sbjct: 231 KGPIENLFDHVADP 244
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 117/221 (52%), Gaps = 46/221 (20%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL- 126
+L+G AGD GFDPL LG+DP + + + EL+HAR+AM G G + +LL + G+ EL
Sbjct: 72 HLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGV-ELG 130
Query: 127 -PVWYEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRYMDYIS-- 166
PVW++ GA + F+ A + + ++ Q +LMG E RY+ S
Sbjct: 131 EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLE 190
Query: 167 ------PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 220
PG Q YPGG +PL A D + ++EIKNGR
Sbjct: 191 PVGVFLPGDQN------------------YPGGGPFDPLNYAADADGFVDQAVREIKNGR 232
Query: 221 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
LAMVAMLG+FVQA+VT GP+ N++E +SDP + I +A
Sbjct: 233 LAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFTNVA 273
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 121/243 (49%), Gaps = 33/243 (13%)
Query: 27 SSIGITSAFLPA----KSGTTRRYLATVV-RAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ +SG AT R W PG P +LDG+ GDFGFDP
Sbjct: 13 SAVGVPSLLAPSSRSGRSGLPFCAFATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 72
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY---EAGAVEF- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W + A F
Sbjct: 73 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYFG 132
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 VPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 172
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 253
+PLG +KD E KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHLADPWH 232
Query: 254 KTI 256
I
Sbjct: 233 NNI 235
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 21 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 80
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL G++ VW++AGA F + L Q +L
Sbjct: 81 IHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 140
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 141 IWACQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 192
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 193 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 230
>gi|125660620|gb|ABN49455.1| photosystem I chlorophyll a/b binding protein [Pisum sativum]
Length = 144
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 95/150 (63%), Gaps = 8/150 (5%)
Query: 112 ILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS
Sbjct: 1 MLLPEVFTSIGIINVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 59
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A LG +
Sbjct: 60 QDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFII 112
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
Q +VT GP DN+L+H+SDPWH TI+QTL
Sbjct: 113 QHNVTGKGPFDNLLQHISDPWHNTIVQTLG 142
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL++P
Sbjct: 218 VQAIVTGKGPIENLNDHLANP 238
>gi|226496924|ref|NP_001148598.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|195620680|gb|ACG32170.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 151
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 7/138 (5%)
Query: 129 WYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
W++ G + +A + TLF+ + LMGFAE +R D+ +PGS K+ F GLE L
Sbjct: 12 WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKFL 70
Query: 184 EGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
G +P YPGGPL NPLG K + E KLKEIKNGRLAM+A+LG F+Q VT VGP
Sbjct: 71 AGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQ 130
Query: 243 NILEHLSDPWHKTIIQTL 260
N+L+HL+DP + ++ +L
Sbjct: 131 NLLDHLADPVNNNVLTSL 148
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 118/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWL-PGVDP-PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L P D P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H+R+AM G GI+F ++L G++ VW++AGA F S
Sbjct: 100 IHSRWAMLGALGIVFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PLGLA D
Sbjct: 160 IWAVQVVLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADD 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM ++ G FVQA VT GPI N+ +H++DP
Sbjct: 203 PDAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFVLFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL++P
Sbjct: 218 VQAIVTGKGPIENLNDHLANP 238
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 119/231 (51%), Gaps = 38/231 (16%)
Query: 42 TTRRYLATVVRA----QQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV 95
T RR + +V ++ RP +L P YL G GD+G+D GL DPE+
Sbjct: 31 TMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR 90
Query: 96 QAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA-------------- 140
+ E++H+R+AM G G +F ++L G++ VW++AGA F
Sbjct: 91 ELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 150
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
S ++ Q++LMGF E R G EGL+ YPGG +PLG
Sbjct: 151 SILAIWACQVVLMGFVEGYR----------------VGGGPLGEGLDKVYPGGAF-DPLG 193
Query: 201 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
LA D A E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 194 LADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 244
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPRWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL++P
Sbjct: 218 VQAIVTGKGPIENLNDHLANP 238
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 108/202 (53%), Gaps = 31/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G
Sbjct: 69 PAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGTPI 128
Query: 126 L-PVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
+ PVW++AGA F S VQ++LMG E R ++ G
Sbjct: 129 VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVILMGAIEGYR----VNGGP- 183
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+ +PGG +PLGLA+D E K+KEIKNGRLAM +M G F
Sbjct: 184 -----------AGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFGFF 232
Query: 231 VQASVTHVGPIDNILEHLSDPW 252
VQA VT GP+ N+ EHL+ P+
Sbjct: 233 VQAIVTGKGPLANLDEHLASPF 254
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 92 PAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F + +++L+G AE R ++ +
Sbjct: 152 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLIFAVVAEVVLVGGAEYYRIINGLD----- 205
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLA D A K+KEIKNGRLAM AMLG F+
Sbjct: 206 -------LEDKL------HPGGPF-DPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFI 251
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ HLSDP+ ++ +A +
Sbjct: 252 QAYVTGEGPVENLAAHLSDPFGNNLLTVIAGT 283
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 118/264 (44%), Gaps = 78/264 (29%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 109 STDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 168
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 169 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TW 222
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE ST TL +++L++G+ E +R
Sbjct: 223 QDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------- 263
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T G
Sbjct: 264 NAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 323
Query: 240 PIDNILEHLSDPWHKTIIQTLANS 263
P++N HLSDP H TII T ++S
Sbjct: 324 PLNNWATHLSDPLHTTIIDTFSSS 347
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 108/202 (53%), Gaps = 31/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL+G GD+G+D GL DPE+ Y + E++HAR+AM G G L +LL G
Sbjct: 12 PSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNGFTF 71
Query: 125 ELPVWYEAGA-------VEF-------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
+ PVW++AGA +++ S VQ++LMG AE R
Sbjct: 72 QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAA-------- 123
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G ++GL+ YPGGP +PL A D E K+KEIKNGRLAM +M G F
Sbjct: 124 -------GSAPGVDGLDKLYPGGPF-DPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFF 175
Query: 231 VQASVTHVGPIDNILEHLSDPW 252
VQA VT GP++N+ +HL+ P+
Sbjct: 176 VQAIVTGKGPLENLNDHLASPY 197
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL +G +
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 117
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 118 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYR----VNGGP- 172
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 173 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 220
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +HLS+P
Sbjct: 221 VQAIVTGKGPIQNLDDHLSNP 241
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + P+ Y EL+HAR+AM G AG + + G
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F + +++L+G AE R + +
Sbjct: 152 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRITNGL------ 204
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
G + L +PGGP +PLGLAKD A K+KEIKNGRLAM AMLG F
Sbjct: 205 ------GFDDKL------HPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFF 251
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 252 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 283
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 118/264 (44%), Gaps = 78/264 (29%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 51 STDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 110
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 111 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TW 164
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE ST TL +++L++G+ E +R
Sbjct: 165 QDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------- 205
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T G
Sbjct: 206 NAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKG 265
Query: 240 PIDNILEHLSDPWHKTIIQTLANS 263
P++N HLSDP H TII T ++S
Sbjct: 266 PLNNWATHLSDPLHTTIIDTFSSS 289
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 120/242 (49%), Gaps = 38/242 (15%)
Query: 31 ITSAFLPAKSGTTRRYL---ATVVRAQQRPTWLPGV---DPPPYLDGTLAGDFGFDPLGL 84
+ S+ P SG + R + A RP +L D P YL G GD+G+D GL
Sbjct: 9 VRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGL 68
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTR 143
DPE+ + Y + EL+HAR+AM G G + +LL GI VW++AGA F
Sbjct: 69 SADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLN 128
Query: 144 TL--------------FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
L Q+++MG AE R G G EGL+P
Sbjct: 129 YLGNENLIHAQSIIATLAFQVVVMGLAEAYR-----------ANGGPLG-----EGLDPL 172
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
+PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI N+ +HL+
Sbjct: 173 HPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLA 231
Query: 250 DP 251
+P
Sbjct: 232 NP 233
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 106/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT G
Sbjct: 178 GPLGEGLDPLYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 240 PIDNILEHLSDP 251
PI+N+ +H++DP
Sbjct: 237 PIENLADHIADP 248
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 113/214 (52%), Gaps = 38/214 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 89 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 148
Query: 126 LP--VWYEAGAVEFKFASTRTLF--------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ TL+ I +++L+G AE R ++ +
Sbjct: 149 GPEAVWFKTGAL---LLDGNTLYYFGKNIPINLVLAVIAEVVLVGGAEYYRIINGLD--- 202
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
LE L +PGGP +PLGLAKD A K+KEIKNGRLAM +MLG
Sbjct: 203 ---------LEDKL------HPGGPF-DPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGF 246
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
F+QA VT GP++N+ HLSDP+ ++ + +
Sbjct: 247 FIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGA 280
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIIN 53
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 227 VQAIVTGKGPIENLFDHVTDP 247
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G++
Sbjct: 56 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 115
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 116 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 170
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 171 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 218
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL++P
Sbjct: 219 VQAIVTGKGPIENLNDHLANP 239
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKELKNGRLAMTSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP++N+ +H++DP
Sbjct: 229 VQAIVTGKGPVENLYDHVADP 249
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 108/202 (53%), Gaps = 30/202 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ + + E++HAR+AM G G +F ++L E
Sbjct: 54 PAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVE 113
Query: 126 L--PVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGS 169
VW++AGA F L +VQ+LLMG E R +
Sbjct: 114 FGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQVLLMGAVEIYR--------A 165
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
+ S FG EG + YPGG +PLGLA D E K+KE+KNGRLAM++MLG
Sbjct: 166 NGEGPSGFG-----EGQDNLYPGGAF-DPLGLADDPDTLAELKVKELKNGRLAMMSMLGF 219
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP+DN+L HL +P
Sbjct: 220 FVQAIVTGKGPLDNLLTHLEEP 241
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 203 PEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-ISNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 203 PEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 123/249 (49%), Gaps = 37/249 (14%)
Query: 24 VNKSSIGITS-AFLPAKSGTTRRYLATVVRAQQRPTWL-PGVDP--PPYLDGTLAGDFGF 79
V S +G T+ + LP + A R WL P D P YL G GD+G+
Sbjct: 2 VQTSLVGTTTKSTLPKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGW 61
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEF 137
D GL DPE+ + Y + EL+HAR+AM G G + ++L G VW+ AGA F
Sbjct: 62 DTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIF 121
Query: 138 KFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
K S + I Q++LMG E R ++ G A
Sbjct: 122 KDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP------------AG 165
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G +VQA VT GP++N
Sbjct: 166 EGLDPLYPG-ESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVEN 224
Query: 244 ILEHLSDPW 252
EH++DP+
Sbjct: 225 WAEHVADPF 233
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 203 PEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 121/233 (51%), Gaps = 17/233 (7%)
Query: 27 SSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGL 84
S +G + A + + T R ++ RP +L P YL G GD+ +D GL
Sbjct: 27 SKVGASQARITMRR-TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGL 85
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK----- 138
DPE+ + E++H+R+AM G G +F +LL TG++ VW++AGA F
Sbjct: 86 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLD 145
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
+ L Q +L +A M I EG G EGL+P YPGG +P
Sbjct: 146 YLGNPNLIHAQSILAIWAFQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDP 197
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
LGLA D E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 198 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 9 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 68
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F +LL G++ VW++AGA F + L Q +L
Sbjct: 69 IHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 128
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 129 IWAFQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 180
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 181 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 218
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 126 GESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 229 VQAIVTGKGPIENLFDHVADP 249
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 203 PEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 122
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 123 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 172
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D A E K+KE+KNGRLAM +M G F
Sbjct: 173 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFF 225
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 226 VQAIVTGKGPIENLFDHVADP 246
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAE-HFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 111/207 (53%), Gaps = 32/207 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
L G +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL
Sbjct: 61 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 120 VTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDY 164
G++ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI--- 177
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
G G E ++P YPGG +PLGLA D E K+K+IKNGRLAM
Sbjct: 178 --------AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEACAELKVKKIKNGRLAMF 223
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDP 251
+M G FVQA VT GP++N+ +HL+DP
Sbjct: 224 SMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|326532160|dbj|BAK01456.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 78
Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/78 (76%), Positives = 65/78 (83%)
Query: 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL 245
L+PGYPGGPL NP+GLAKDI NA E KLKEIKNGRLAMVAMLG VQASVTH GPIDN+L
Sbjct: 1 LQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDNLL 60
Query: 246 EHLSDPWHKTIIQTLANS 263
HLSDP++K II L S
Sbjct: 61 THLSDPFNKNIIHALTLS 78
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H+R+AM G G F ++L G++ VW++AG+ F S
Sbjct: 100 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ VQ++LMGF E R G EGL+P YPGG +PL LA+D
Sbjct: 160 IWAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAED 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 203 PEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|207853266|gb|ACI25418.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFTLFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L + L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + ++T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIIN 53
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIIN 53
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 109/201 (54%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G GI+ +LL+ G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGIVTPELLQKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L VQ++L+G E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVLLGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM + G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +HLS+P
Sbjct: 218 VQAIVTGKGPIQNLDDHLSNP 238
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +H++DP
Sbjct: 229 VQAIVTGKGPIQNLYDHVADP 249
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 51 DRPLWFPGAKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 110
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 111 TEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 164
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 165 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 205
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T GP+
Sbjct: 206 ELDSEKRLYPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TII T ++S
Sbjct: 266 NNWATHLSDPLHTTIIDTFSSS 287
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G +F +LL G+
Sbjct: 56 EPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV 115
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F+ S + Q++LMG E R
Sbjct: 116 PFGESVWFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGTQVILMGAIEGYRV------- 168
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G EGL+ YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 169 ----NGGPLG-----EGLDKLYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 218
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP+ N+ +HL++P
Sbjct: 219 FFVQAIVTGKGPLQNLSDHLANP 241
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 103 DIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGA 162
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 163 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN------ 215
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM +MLG
Sbjct: 216 ------------GLDFEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 262
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
FVQA VT GP++N+ HLSDP+ ++ L S
Sbjct: 263 FVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGS 296
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 103 DIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 162
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 163 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN------ 215
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM +MLG
Sbjct: 216 ------------GLDFEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 262
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
FVQA VT GP++N+ HLSDP+ ++ L S
Sbjct: 263 FVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGS 296
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 111/216 (51%), Gaps = 35/216 (16%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP +L + +PP YL G GD+G+D G DP + Y E++HAR+A+ G GI
Sbjct: 46 DRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALGI 105
Query: 113 LFTDLLRVTGIR---ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGF 155
+ ++L G+ + +W++AG+ FK L VQ+++MG
Sbjct: 106 VTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVMGA 165
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
AE R G +EGL+ YPGGP +PLGLA D E K+KE
Sbjct: 166 AEGFRAN---------------GEAPGVEGLDTLYPGGPF-DPLGLADDPDTFAELKVKE 209
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
IKNGRLAM A G FVQA VT GPI N+ +HL+DP
Sbjct: 210 IKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADP 245
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 103 DIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 162
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 163 YCGPEAVWFKTGALLLD-GGTLSYFGASIHINLIAAVVAEVILVGGAEYYRATN------ 215
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM +MLG
Sbjct: 216 ------------GLDFEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 262
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
FVQA VT GP++N+ HLSDP+ ++ L S
Sbjct: 263 FVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGS 296
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G +AGD+G+DP GLG+ PE+ Y EL+HAR+AM G AG + + L G
Sbjct: 85 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGCIIPEALNKYGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T + F + +++L+G AE R +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLSYFGKNIPINLVLAVVGEVVLLGGAEYYRITN-------- 195
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
L+ + +PGGP +PL LAKD K+KEIKNGRLAM +M F+
Sbjct: 196 ----------GLDFEDKLHPGGPF-DPLDLAKDPEQGALLKVKEIKNGRLAMFSMFAFFI 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ +A +
Sbjct: 245 QAYVTGEGPVENLSKHLSDPFGNNLLTVIAGT 276
>gi|207853270|gb|ACI25420.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQA+LV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + ++ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL GI
Sbjct: 48 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGI 107
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AGA F L Q+++MG AE R
Sbjct: 108 PFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYR-------- 159
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 160 ---ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 210
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI N+ +HL++P
Sbjct: 211 FFVQAIVTGKGPIQNLDDHLANP 233
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 120/242 (49%), Gaps = 38/242 (15%)
Query: 31 ITSAFLPAKSGTTRRYL---ATVVRAQQRPTWLPGV---DPPPYLDGTLAGDFGFDPLGL 84
+ S+ P SG + R + A RP +L D P YL G GD+G+D GL
Sbjct: 6 VRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGL 65
Query: 85 GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTR 143
DPE+ + Y + EL+HAR+AM G G + +LL GI VW++AG+ F
Sbjct: 66 SADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLN 125
Query: 144 TL--------------FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
L Q+++MG AE R G G EGL+P
Sbjct: 126 YLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------ANGGPLG-----EGLDPL 169
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
+PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI N+ +HL+
Sbjct: 170 HPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLA 228
Query: 250 DP 251
+P
Sbjct: 229 NP 230
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KE+KNGRLA +M G FVQA VT G
Sbjct: 179 GPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLATFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
P++N+L+HL+DP
Sbjct: 238 PVENLLDHLADP 249
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 119/233 (51%), Gaps = 41/233 (17%)
Query: 32 TSAFLPAKSGTTRRYLATVVR------AQQRPTWLPGVD------PPPYLDGTLAGDFGF 79
++A L R +A R A + +WLPGV P +LDG+L GD+GF
Sbjct: 25 SNALLSHCPSNGARVMAMATRKISAKPASGKKSWLPGVRGGGDLVDPEWLDGSLPGDYGF 84
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE-----AGA 134
DPLGLG+DP L+WY +AEL+H R+AMA V GI +GI W+E
Sbjct: 85 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGAAPGAV 138
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALE-----GLEPG 189
F F S L QLLLMG+ E+KRY+D+ P +Q E + A+ GL+ G
Sbjct: 139 APFSFGS---LLGTQLLLMGWVESKRYVDFFEPNTQAVEWATPWSRTAVNFANSTGLQ-G 194
Query: 190 YPGGPLLNPLGLA---------KDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
YPGG +PL LA D + +L EIK+ RLAMVAML + +A
Sbjct: 195 YPGGKFFDPLRLAGSMKGGDYVPDFDKLQRLQLAEIKHARLAMVAMLIFYFEA 247
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL G++
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL++P
Sbjct: 218 VQAIVTGKGPIENLNDHLANP 238
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 177 GPLGEGLDKVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
Query: 240 PIDNILEHLSDP 251
PI+N+ +H++DP
Sbjct: 236 PIENLFDHVADP 247
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 111/213 (52%), Gaps = 32/213 (15%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAET 158
+H R+AM G G +F +LL TG++ VW++A ++ Q++LMG E
Sbjct: 101 IHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKA------------IWASQVVLMGLIEG 148
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
R G G EGL+P YPGG +PLGLA D E K+KEIKN
Sbjct: 149 YRV-----------GGGPLG-----EGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKN 191
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
GRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 192 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 224
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 107/203 (52%), Gaps = 33/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L G
Sbjct: 51 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTS 110
Query: 126 L--PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW+ AGA FK S + I Q++LMG E R ++ G
Sbjct: 111 FGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP 166
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 167 ------------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 213
Query: 230 FVQASVTHVGPIDNILEHLSDPW 252
+VQA VT GP++N EH++DP+
Sbjct: 214 YVQAIVTGKGPVENWAEHIADPF 236
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 107/205 (52%), Gaps = 28/205 (13%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 120 VTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+ W G + + + T+ ++ L + F E +R M+ P +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKK- 118
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
YPGG +PLG +KD + E K+KEIKNGRLA++A +G VQ
Sbjct: 119 -----------------YPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 160
Query: 233 ASV-THVGPIDNILEHLSDPWHKTI 256
S GP++N+ HL+DPWH I
Sbjct: 161 QSAYPGTGPLENLATHLADPWHNNI 185
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDP 250
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 112/206 (54%), Gaps = 41/206 (19%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AE++H R+AMA V
Sbjct: 22 KKSWLPGVRAGGDLVDPSWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEIIHGRWAMAAV 81
Query: 110 AGILFTDLLRVTGIRELPVWYE-----AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 164
GI +G+ W+E F F S L QLLLMG+ E+KRY+D+
Sbjct: 82 LGIFVGQAW--SGVP----WFEAGAAPGAVAPFSFGS---LLGTQLLLMGWVESKRYVDF 132
Query: 165 ISPGSQ--------TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-------- 208
PG+Q ++ S FG L+ GYPGG +PL LA +++
Sbjct: 133 FDPGTQALEWATPWSRTASNFGNSTGLQ----GYPGGKFFDPLRLAGEMKGGDYVPDFEK 188
Query: 209 -REWKLKEIKNGRLAMVAMLGIFVQA 233
+L EIK+ RLAM+AML + +A
Sbjct: 189 LERLQLAEIKHARLAMLAMLIFYFEA 214
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDAIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+++HL+DP
Sbjct: 229 VQAIVTGKGPIENLVDHLADP 249
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 116/260 (44%), Gaps = 78/260 (30%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW---------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 52 RPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIGTRV 111
Query: 94 ---------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
+ + EL+H R+AM G L + L TG+ W +A
Sbjct: 112 ESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQDA 165
Query: 133 GAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
G VE S+ TL +++LL+G+ E +R A
Sbjct: 166 GKVELVEGSSYLGQPLPFSISTLIWIEVLLIGYIEFQR-------------------NAE 206
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+VT GP++
Sbjct: 207 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLN 266
Query: 243 NILEHLSDPWHKTIIQTLAN 262
N HLSDP H TII TL +
Sbjct: 267 NWATHLSDPLHTTIIDTLTS 286
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++ GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G VE+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKVEY-FASSTTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLPPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
+ NPL A + E K KE+ N
Sbjct: 118 S-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIIN 53
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G +
Sbjct: 58 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQF 117
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L Q++LMG E R ++ G
Sbjct: 118 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGP- 172
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 173 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 220
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HLS+P
Sbjct: 221 VQAIVTGKGPVQNLDDHLSNP 241
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL +G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HL++P
Sbjct: 218 VQAIVTGKGPVQNLDDHLANP 238
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 78 DIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 137
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 138 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN------ 190
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM +MLG
Sbjct: 191 ------------GLDFEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 237
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
FVQA VT GP++N+ HLSDP+ ++ L S
Sbjct: 238 FVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGS 271
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL +G +
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 113
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 168
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 169 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 216
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HL++P
Sbjct: 217 VQAIVTGKGPVQNLDDHLANP 237
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G +GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L + +M + G + G
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVFMGAVE-GYRVAGGPLG 182
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E ++P YPGG L +PLGLA D E K+KEIKNGRLAM++M G FVQA VT
Sbjct: 183 ------EVVDPLYPGGSL-DPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFVQAIVTG 235
Query: 238 VGPIDNILEHLSDP 251
GP++NI +HL+DP
Sbjct: 236 KGPLENITDHLADP 249
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 49 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 109 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 162 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 211
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI+N+ +HL++P
Sbjct: 212 GFFVQAIVTGKGPIENLSDHLANP 235
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 86 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 145
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 146 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 199
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 200 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 248
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 249 FFVQAIVTGKGPLENLADHLSDP 271
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 121/236 (51%), Gaps = 37/236 (15%)
Query: 37 PAKSGTTRRYLATV-VRAQQRPTWL-PGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLR 92
PA G+ + A+V R WL P D P YL G GD+G+D GL DPE+
Sbjct: 16 PAVRGSRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFA 75
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTG---IRELPVWYEAGAVEFK----------- 138
Y + E++HAR+AM G G L +LL+ G E VW++AGA F
Sbjct: 76 RYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPS 135
Query: 139 ---FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPL 195
S + + QL++MG AE RY EG +E + + L YPGG
Sbjct: 136 LIHAQSIVAVLLTQLVIMGAAEAYRY---------AGEGP---VETSGDSL---YPGG-A 179
Query: 196 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
+PLGLA D E K+KE+KNGRLAM +M G FVQA +T P++N+ +HL+DP
Sbjct: 180 FDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADP 235
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 84 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 143
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R ++ +
Sbjct: 144 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLD----- 197
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +ML F+
Sbjct: 198 -------LEDKL------HPGGPF-DPLGLASDPDQAAILKVKEIKNGRLAMFSMLAFFI 243
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 244 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 275
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 117/261 (44%), Gaps = 78/261 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG E L++
Sbjct: 48 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTR 107
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 108 TEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 161
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL ++++L++G+ E +R A
Sbjct: 162 AGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR-------------------NA 202
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT GP+
Sbjct: 203 ELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPL 262
Query: 242 DNILEHLSDPWHKTIIQTLAN 262
+N HLSDP H TII TL++
Sbjct: 263 NNWATHLSDPLHTTIIDTLSS 283
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 49 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 109 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 162 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 211
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI+N+ +HL++P
Sbjct: 212 GFFVQAIVTGKGPIENLSDHLANP 235
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +H++DP
Sbjct: 229 VQAIVTGKGPIQNLYDHVADP 249
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 119/242 (49%), Gaps = 33/242 (13%)
Query: 27 SSIGITSAFLPAK-SGTT----RRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDP 81
S++G+ S P+ SG + Y T R W PG P +LDG+ GDFGFDP
Sbjct: 13 SAVGVPSLLAPSSLSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDP 72
Query: 82 LGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-- 137
LGL PE+ + ++E+ H R+AM V G+L + L + + W G +
Sbjct: 73 LGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLG 132
Query: 138 ---KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194
+ + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 NPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 172
Query: 195 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 253
+PLG +KD E KLKEIKNGRLAM+A +G VQ S GP++N HL+DPWH
Sbjct: 173 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTHLADPWH 232
Query: 254 KT 255
T
Sbjct: 233 NT 234
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HL++P
Sbjct: 218 VQAIVTGKGPVQNLDDHLANP 238
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 125/256 (48%), Gaps = 39/256 (15%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGV--DPPPYLDGT 72
S+ +F+ V + +TS K G+ +V RP +L D P YL G
Sbjct: 5 SAKTFVGTQVASKKM-VTSMRRTQKKGSAPD---SVWYGPDRPQFLGPFSGDTPSYLTGE 60
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWY 130
GD+G+D GL DPE+ R Y + EL+HAR+AM G G + ++L G VW+
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 131 EAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 176
+AG+ F+ S + Q++LMG E R G
Sbjct: 121 KAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRV-----------NGGP 169
Query: 177 FGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236
G EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 170 LG-----EGLDPLYPGDKF-DPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVT 223
Query: 237 HVGPIDNILEHLSDPW 252
GPI+N EH++DP+
Sbjct: 224 GKGPIENWAEHVADPF 239
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 49 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 108
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 109 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 161
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 162 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 211
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI+N+ +HL++P
Sbjct: 212 GFFVQAIVTGKGPIENLSDHLANP 235
>gi|161376574|gb|ABX71549.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376576|gb|ABX71550.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376578|gb|ABX71551.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376580|gb|ABX71552.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376582|gb|ABX71553.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376584|gb|ABX71554.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376586|gb|ABX71555.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376588|gb|ABX71556.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376590|gb|ABX71557.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376592|gb|ABX71558.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376594|gb|ABX71559.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376596|gb|ABX71560.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376598|gb|ABX71561.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376600|gb|ABX71562.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376602|gb|ABX71563.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376604|gb|ABX71564.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376606|gb|ABX71565.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376608|gb|ABX71566.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376610|gb|ABX71567.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
Length = 135
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 90/140 (64%), Gaps = 8/140 (5%)
Query: 122 GIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F
Sbjct: 2 GILNVPKWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KNY 58
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
+L E GYPGG + NPL A E K KE+ NGRLAM+A LG VQ +VT GP
Sbjct: 59 SLPPNEVGYPGG-IFNPLNFAP----TAEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 113
Query: 242 DNILEHLSDPWHKTIIQTLA 261
DN+L+HLSDPWH TI+QT++
Sbjct: 114 DNLLQHLSDPWHNTIVQTMS 133
>gi|207853246|gb|ACI25408.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDPE+LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ AS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEYS-ASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 117/261 (44%), Gaps = 78/261 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG E L++
Sbjct: 48 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTR 107
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 108 TEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 161
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL ++++L++G+ E +R A
Sbjct: 162 AGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR-------------------NA 202
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT GP+
Sbjct: 203 ELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPL 262
Query: 242 DNILEHLSDPWHKTIIQTLAN 262
+N HLSDP H TII TL++
Sbjct: 263 NNWATHLSDPLHTTIIDTLSS 283
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 227 VQAIVTGKGPIENLFDHVADP 247
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 50 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 109
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 110 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 162
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 163 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 212
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI+N+ +HL++P
Sbjct: 213 GFFVQAIVTGKGPIENLSDHLANP 236
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 68 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 127
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 128 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 180
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 181 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 230
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI+N+ +HL++P
Sbjct: 231 GFFVQAIVTGKGPIENLSDHLANP 254
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ----AGGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 187 -----GGPLG-----EVTDPIYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLADHLADP 258
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 93 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 152
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F I +++L+G AE R ++ ++
Sbjct: 153 GPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN----- 206
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
E L +PGGP +PLGLA D A K+KEIKNGRLAM AMLG +
Sbjct: 207 -------FEDKL------HPGGPF-DPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 252
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 253 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 284
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +H++DP
Sbjct: 229 VQAIVTGKGPIQNLYDHVADP 249
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 55 QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP WL + P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G
Sbjct: 54 DRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 113
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAE 157
L +LL +G++ VW++AGA F S ++ Q++LMG E
Sbjct: 114 LTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVE 173
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G + +P YPGG +PLGLA D E K+KEIK
Sbjct: 174 GYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIK 216
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
NGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 250
>gi|242070955|ref|XP_002450754.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
gi|241936597|gb|EES09742.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
Length = 88
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 67/85 (78%), Gaps = 6/85 (7%)
Query: 38 AKSGTTRRYLATVVR------AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL 91
A++ +R YL+ QRPTWLPG+DPPP+LDGTL GDFGFDPLGLGEDP SL
Sbjct: 4 ARNNHSRLYLSRARVVAVRAAGTQRPTWLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASL 63
Query: 92 RWYVQAELVHARFAMAGVAGILFTD 116
+WYVQAELVH RFAMAGVAGILFTD
Sbjct: 64 KWYVQAELVHCRFAMAGVAGILFTD 88
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 112/218 (51%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D + DPE+ + E+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL G++ VW++AGA F +A L Q +L
Sbjct: 101 IHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P PGG +PLGLA D E K+
Sbjct: 161 IWACQVVLMGLI-------EGYRVGGGTLGEGLDPLLPGGAF-DPLGLADDPEACAELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D + E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +H++DP
Sbjct: 229 VQAIVTGKGPIQNLYDHVADP 249
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M +I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 213 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 250
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L GI+
Sbjct: 20 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKF 79
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 80 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFIEGYR---------- 129
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D A E K+KE+KNGRLAM +M G F
Sbjct: 130 ------VGGGPLGEGLDIIYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFF 182
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP++N+ +H++DP
Sbjct: 183 VQAIVTGKGPVENLFDHIADP 203
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q+LLMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 117/265 (44%), Gaps = 78/265 (29%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
R RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 50 RDTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDII 109
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 110 GTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----T 163
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------ 205
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 206 -NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGK 264
Query: 239 GPIDNILEHLSDPWHKTIIQTLANS 263
GP++N HLSDP H TII T ++S
Sbjct: 265 GPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 111/219 (50%), Gaps = 28/219 (12%)
Query: 46 YLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFA 105
+ T R W+PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+A
Sbjct: 40 HATTSGRVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWA 99
Query: 106 MAGVAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAET 158
M V G+L + L + + W G + + + T+ V+ + + FAE
Sbjct: 100 MLAVPGVLVPEALGLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEH 159
Query: 159 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+R M+ + K+ YPGG +PLG ++D E+KLKEIKN
Sbjct: 160 QRTMEK---DPEKKK----------------YPGG-AFDPLGFSRDPAKLEEYKLKEIKN 199
Query: 219 GRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
GRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 200 GRLAMLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 238
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ----AGGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL GI
Sbjct: 28 DTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGI 87
Query: 124 R-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPG 168
VW++AG+ F L Q+++MG AE R
Sbjct: 88 PFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-------- 139
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 140 ---ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 190
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI N+ +HL++P
Sbjct: 191 FFVQAIVTGKGPIQNLDDHLANP 213
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F +LL G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D + E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +H++DP
Sbjct: 229 VQAIVTGKGPIQNLYDHVADP 249
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ----AGGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 117/262 (44%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP+GLG+ E L++
Sbjct: 50 DRPLWFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTR 109
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 110 FEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 163
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE + S+ TL +++LL+G+ E +R A
Sbjct: 164 AGKVELENGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR-------------------NA 204
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T GP+
Sbjct: 205 ELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 264
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TI T ++S
Sbjct: 265 NNWATHLSDPLHTTIFDTFSSS 286
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWASQVVLMGLI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 111/207 (53%), Gaps = 32/207 (15%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
L G +PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL
Sbjct: 58 LSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLA 117
Query: 120 VTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDY 164
G++ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 118 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-- 175
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM
Sbjct: 176 ---------GGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMF 220
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDP 251
+M G FVQA VT GP++N+ +HL+DP
Sbjct: 221 SMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 108/204 (52%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL + G
Sbjct: 48 DVPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAG 107
Query: 123 IR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISP 167
+ VW++AGA F L Q+++MG AE R
Sbjct: 108 VSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR------- 160
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 161 ----ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 210
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI+N+ +HL++P
Sbjct: 211 GFFVQAIVTGKGPIENLSDHLANP 234
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T + F I +++L+G AE R ++ +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLSYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLD----- 198
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +M F+
Sbjct: 199 -------LEDKL------HPGGPF-DPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 245 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 276
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +H++DP
Sbjct: 229 VQAIVTDKGPVQNLYDHVADP 249
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H R+AM G G +F ++L G++ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+ YPGG +PLGLA D
Sbjct: 160 IWACQVVLMGFVEGYR----------------VGGGPLGEGLDKIYPGGAF-DPLGLADD 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 203 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPVWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T GP+
Sbjct: 209 ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TII T ++S
Sbjct: 269 NNWATHLSDPLHTTIIDTFSSS 290
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
DPP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 59 DPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 118
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 119 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 172
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 173 -----GGPLG-----EIVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 221
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 222 FFVQAIVTGKGPLENLADHLADP 244
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M +I EG G
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFI-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D A E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 177 GPLGEGLDKIYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
Query: 240 PIDNILEHLSDP 251
P++N+ +H++DP
Sbjct: 236 PVENLFDHVADP 247
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 117/265 (44%), Gaps = 78/265 (29%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
R RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 50 RDTVRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDII 109
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 110 GTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----T 163
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL ++ L++G+ E +R
Sbjct: 164 WQDAGKVELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQR------------------ 205
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+VT
Sbjct: 206 -NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGK 264
Query: 239 GPIDNILEHLSDPWHKTIIQTLANS 263
GP++N HLSDP H TII T ++S
Sbjct: 265 GPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 30/193 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG P YLDGT+AGD+GFDPL LG +PE+L + +AEL++ R+AMA AGILFTD +
Sbjct: 43 WYPGAVAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV 102
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP W+EAGAV++ + L Q++ M E R ++ G
Sbjct: 103 G------LPKWWEAGAVDYGM-DFQQLVGFQVVAMSILEAARTRGFMKSGES-------- 147
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
G+ +P +P GL +A + ++KE+KN RLAMVA LG+ Q +VT +
Sbjct: 148 ------GVLNAFP----FDPAGL-----DAPDKRVKEVKNARLAMVAFLGMVSQYAVTGL 192
Query: 239 GPIDNILEHLSDP 251
P++ + H+++P
Sbjct: 193 SPLEGLEAHMANP 205
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 20 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 79
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 80 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 129
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 130 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 182
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 183 VQAIVTGKGPIENLFDHVADP 203
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 115/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M +I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 213 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 250
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNGVKF 124
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------- 174
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 175 ------VGGGPLGEGLDAIYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +HL+DP
Sbjct: 228 VQAIVTGKGPIENLYDHLADP 248
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 187 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLTDHLADP 258
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 34/214 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GL + PE+ Y EL+HAR+AM G AG + + G
Sbjct: 103 DIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 162
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ T + F + +++L+G AE R +
Sbjct: 163 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATN------ 215
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM +MLG
Sbjct: 216 ------------GLDFEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 262
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
FVQA VT GP++N+ HLSDP+ ++ L S
Sbjct: 263 FVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGS 296
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ ++ E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGGAF-DPLGLADDPEAFAELKV 211
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 249
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 87 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFVIPEAFNKFGADC 146
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + + + + LE L
Sbjct: 147 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVVAVVAEVVLLGGAEYYRITNGLDLEDKL 205
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+PGGP +PLGLAKD A K+KEIKNGRLAM AMLG F+QA VT GP++N
Sbjct: 206 ------HPGGPF-DPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGKGPVEN 258
Query: 244 ILEHLSDPWHKTIIQTLANS 263
+ HLSDP+ ++ +A +
Sbjct: 259 LAAHLSDPFGNNLLTVIAGT 278
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 113/218 (51%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G++ VW++AG+ F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 VWASQVVLMGLI-------EGYRVGGGPLGEGLDKIYPGGAF-DPLGLADDPEAFAELKV 211
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F + L Q +L +A M I EG G
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 179 GPLGEGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
PI+N+ +HLSDP
Sbjct: 238 PIENLFDHLSDP 249
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 116/262 (44%), Gaps = 79/262 (30%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV------------------- 95
RP W PG P YLDG+L GD+GFDPLGLG+ P L++ V
Sbjct: 63 NRPLWFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGER 122
Query: 96 -------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
+ EL+H R+AM G + + TG+ W
Sbjct: 123 VEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETF--TGV----TWQ 176
Query: 131 EAGAVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
+AG VE F F+ + L +++L++GF E +R + + P +
Sbjct: 177 DAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRL--------- 226
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
YPGG +PLGLA D KL EIK+ RLAMVA G VQA+ T GP
Sbjct: 227 ---------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGP 277
Query: 241 IDNILEHLSDPWHKTIIQTLAN 262
+DN + HLSDP H TII T +
Sbjct: 278 LDNWVTHLSDPLHTTIIDTFSK 299
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + L Q +L +A M + EG
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAV-------EGYRI 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 179 GGGPLGEVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 238 KGPLENLADHLADP 251
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 187 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLADHLADP 258
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 116/262 (44%), Gaps = 79/262 (30%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV------------------- 95
RP W PG P YLDG+L GD+GFDPLGLG+ P L++ V
Sbjct: 63 NRPLWFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGER 122
Query: 96 -------------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130
+ EL+H R+AM G + + TG+ W
Sbjct: 123 VEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETF--TGV----TWQ 176
Query: 131 EAGAVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
+AG VE F F+ + L +++L++GF E +R + + P +
Sbjct: 177 DAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRL--------- 226
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
YPGG +PLGLA D KL EIK+ RLAMVA G VQA+ T GP
Sbjct: 227 ---------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGP 277
Query: 241 IDNILEHLSDPWHKTIIQTLAN 262
+DN + HLSDP H TII T +
Sbjct: 278 LDNWVTHLSDPLHTTIIDTFSK 299
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 106/199 (53%), Gaps = 28/199 (14%)
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-EL 126
YL G GD+G+D GL DP++ Y + E++HAR+AM G G + +LL G+
Sbjct: 47 YLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAKNGVPFGE 106
Query: 127 PVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTK 172
VW++AGA F+ L VQ++LMG AE R + +PG
Sbjct: 107 AVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYR-ANGGAPGG--- 162
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
FG E L+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQ
Sbjct: 163 ----FG-----EDLDSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFVQ 213
Query: 233 ASVTHVGPIDNILEHLSDP 251
A VT GPI N+ HL+DP
Sbjct: 214 AIVTGQGPIANLDAHLADP 232
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA V GPI+N+ +H++DP
Sbjct: 227 VQAIVRGKGPIENLFDHVTDP 247
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 187 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLADHLADP 258
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G +F ++L G++ VW++AGA F + L Q +L
Sbjct: 100 IHSRWAMLGALGCVFPEILARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 160 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGGSF-DPLGLADDPEAFAELKV 211
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 249
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 107/210 (50%), Gaps = 30/210 (14%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + L G
Sbjct: 88 PEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKFGANC 147
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP----------GSQTKE 173
P VW++ GA LLL G T Y P
Sbjct: 148 GPEAVWFKTGA---------------LLLDG--NTLNYFGNSIPINLILAVVAEVVLVGG 190
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
++ + LE + +PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA
Sbjct: 191 AEYYRITNGLEFDDKLHPGGPF-DPLGLATDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 249
Query: 234 SVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
VT GP +N+ HLSDP+ ++ ++ +
Sbjct: 250 YVTGEGPFENLCAHLSDPFGNNLLTVISGA 279
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDP 250
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 33/217 (15%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
+ R TW+PG PP YLDG++ D+GFDPLGLG++P++L + +AEL+HAR+AM GV+G
Sbjct: 32 KVSMRATWMPGSAPPSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG 91
Query: 112 ILFTDLLRVTGIR--ELPVW----YEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
++ +TGI E PV Y + F + + +++ +M + E+KR
Sbjct: 92 AAGAEI--ITGINWVEAPVQSQQTYLGNTIPFPLPA---IAAIEVFVMAYVESKR----- 141
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
GS+T YPGG +P G +K + + K KE+ NGR+AM+A
Sbjct: 142 --GSETDRSKRM------------YPGG-AFDPAGFSKGA-DFEKLKRKELANGRVAMLA 185
Query: 226 MLGIFVQASVTHV-GPIDNILEHLSDPWHKTIIQTLA 261
GI +A ++ GP+ + HL+DPWH +A
Sbjct: 186 FAGIIGEAQANNLEGPVAALARHLADPWHVNAATNVA 222
>gi|207853280|gb|ACI25425.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)
Query: 73 LAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
L GD GFDPLGL EDP +LRWYVQAELV+ R+AM GV G+L ++L GI +P WY+A
Sbjct: 1 LPGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG 192
G E+ FAS+ TLF+++ +L + E +R+ D +PG ++ F + +L E GYPG
Sbjct: 61 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIF--KQYSLAPHECGYPG 117
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKN 218
G + NPL A + E K KE+ N
Sbjct: 118 G-IFNPLNFAPTL----EAKEKELAN 138
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 120/230 (52%), Gaps = 36/230 (15%)
Query: 55 QRPTWLPG--VDP---PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP +LP +DP P Y++G LAGD+G+DPLGLG + + Y E++H R+AM GV
Sbjct: 62 DRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLG-NKGGVEKYRPYEVLHGRWAMLGV 120
Query: 110 AGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTL------------FIVQLLLMGF 155
G+L + L G + VW+++GAV ++T T I ++ +
Sbjct: 121 VGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFL 180
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E RY G+ GL+P YPGG +PLGLA D A E K+KE
Sbjct: 181 IENYRYQQDGPWGT---------------GLDPLYPGGKYFDPLGLASDPSKADELKVKE 225
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
IKNGRLAM+A LG VQ VT GP N +HL+DP+ + T+ SGS
Sbjct: 226 IKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFL-TILGSGS 274
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T GP+
Sbjct: 209 ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TII T ++S
Sbjct: 269 NNWATHLSDPLHTTIIDTFSSS 290
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 91 PEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F I +++L+G AE R ++ ++
Sbjct: 151 GPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN----- 204
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
E L +PGGP +PLGLA D A K+KEIKNGRLAM AMLG +
Sbjct: 205 -------FEDKL------HPGGPF-DPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 250
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ S
Sbjct: 251 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGS 282
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q+LLMG E R
Sbjct: 120 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 174 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 222
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 223 FFVQAIVTGKGPIENLADHLADP 245
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R G
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-----G 184
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+E + +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 185 GPLREVT-----------DPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +H++DP
Sbjct: 229 VQAIVTGKGPVQNLYDHVADP 249
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 110/207 (53%), Gaps = 33/207 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG--- 122
P YL G GD+G+D GL DPE+ Y + EL+H+R+A+ G GIL + L+ +G
Sbjct: 54 PSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVD 113
Query: 123 IRELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
E VW++AGA F S + Q++L+G AE RY
Sbjct: 114 FGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRY------- 166
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
EG ++ + + L YPGG +PLGL D E K+KEIKNGRLA V++ G
Sbjct: 167 --AGEGP---VDTSGDKL---YPGG-FFDPLGLGDDPEALAELKVKEIKNGRLAQVSVFG 217
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKT 255
FVQA VT GP++N+ +HL+DPW+
Sbjct: 218 FFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 90 PEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 149
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R ++ ++
Sbjct: 150 GPEAVWFKTGALLLD-GNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLN----- 203
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
E L +PGGP +PLGLA D A K+KEIKNGRLAM AMLG +
Sbjct: 204 -------FEDKL------HPGGPF-DPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYF 249
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 250 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGN 281
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L GI+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKF 123
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D A E K+KE+KNGRLAM +M G F
Sbjct: 174 ------VGGGPLDEGLDIIYPGG-AFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFF 226
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP++N+ + L DP
Sbjct: 227 VQAIVTGKGPVENLFDQLRDP 247
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLI-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 179 GPLGEGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
P++N+ +HL+DP
Sbjct: 238 PVENLFDHLADP 249
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 110/203 (54%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R I+ G
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYR----IAGG 153
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 154 PLG------------EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 200
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 201 FFVQAIVTGKGPLENLADHLADP 223
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 227 FFVQAIVTGKGPLENLADHLSDP 249
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 120 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 174 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 222
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 223 FFVQAIVTGKGPLENLADHLADP 245
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R + +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVILVGGAEYYRITNGLD----- 198
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +M F+
Sbjct: 199 -------LEDKL------HPGGPF-DPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 245 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 276
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 109/206 (52%), Gaps = 36/206 (17%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL----R 119
+ P YL G GD+G+D GL DPES EL+H R+AM G G + +LL R
Sbjct: 63 NTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSR 122
Query: 120 VTGIRELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYI 165
VT ++E PVW++AGA F S ++ VQ++LMG E R
Sbjct: 123 VT-LKE-PVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTN--- 177
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
GL EG + YPGG +PLGLA D E K+KE+KNGRLAM +
Sbjct: 178 ------------GLPGVGEGGDL-YPGGKYFDPLGLADDPETLAELKVKELKNGRLAMFS 224
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDP 251
M G FVQA VT GP++N+L+HL++P
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHLANP 250
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 152 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 200
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 201 FFVQAIVTGKGPLENLADHLADP 223
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 67 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 126
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 229
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 230 FFVQAIVTGKGPIENLADHLADP 252
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 120
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG++ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 175 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 223
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 224 FFVQAIVTGKGPLENLADHLSDP 246
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEGYR-------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 174 --------IGGGPLGEVIDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ----AGGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 226 FFVQAIVTGKGPLENLADHLSDP 248
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 152 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 200
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 201 FFVQAIVTGKGPLENLADHLADP 223
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 36 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 95
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 96 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 149
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 150 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 198
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 199 FFVQAIVTGKGPLENLADHLADP 221
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 38 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 97
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 98 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 151
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 152 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAEXKVKELKNGRLAMFSMFG 200
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 201 FFVQAIVTGKGPLENLADHLADP 223
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATRVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
P+ N+ +H++DP
Sbjct: 238 PVQNLYDHVADP 249
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPIENLADHLADP 262
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 69 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 128
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 129 KFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIA------ 182
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 183 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 231
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 232 FFVQAIVTGKGPLENLADHLADP 254
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 36 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 95
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ VQ++LMG E R
Sbjct: 96 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA------ 149
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 150 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 198
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 199 FFVQAIVTGKGPLENLADHLADP 221
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 116/260 (44%), Gaps = 78/260 (30%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE-------DPESL----------------- 91
RP W PG P YLDGTL GD+GFDP GLG+ DP+SL
Sbjct: 54 RPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRF 113
Query: 92 -------------------RWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
+ + + EL+H R+AM G L + L TG+ W +A
Sbjct: 114 EDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQDA 167
Query: 133 GAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
G VE S+ TL +++L++G+ E +R A
Sbjct: 168 GKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQR-------------------NAE 208
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T GP++
Sbjct: 209 LDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLN 268
Query: 243 NILEHLSDPWHKTIIQTLAN 262
N HLSDP H TI TL +
Sbjct: 269 NWATHLSDPLHTTIFDTLGS 288
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GLG+ PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ +T F I +++L+G AE R + +
Sbjct: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNGLD----- 198
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +M F+
Sbjct: 199 -------LEDKL------HPGGPF-DPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 245 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 276
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 32/214 (14%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262
FVQA VT GP++N+ +HL+DP + + N
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNNAWAYVPN 260
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 107/201 (53%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G GI+ +LL G+
Sbjct: 46 PAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAMLGALGIVTPELLAKNGVPF 105
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F+ L VQ++L+G E R ++ G
Sbjct: 106 GEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVILLGLVEGYR----VNGGP- 160
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM + G F
Sbjct: 161 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFGFF 208
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI N+ +HLS+P
Sbjct: 209 VQAIVTGKGPIQNLDDHLSNP 229
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 104/191 (54%), Gaps = 14/191 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M +I EG G
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT G
Sbjct: 178 GPLGEGLDSIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 240 PIDNILEHLSD 250
PI+N+ +HL+D
Sbjct: 237 PIENLFDHLAD 247
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPIENLADHLADP 248
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNG LAM +M G FVQA VT G
Sbjct: 177 GPLGEGLDKVYPGGAF-DPLGLADDPDTFAELKVKELKNGSLAMFSMFGFFVQAIVTGKG 235
Query: 240 PIDNILEHLSDP 251
PI+N+ +H++DP
Sbjct: 236 PIENLFDHVADP 247
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL G GD+G+D GL DPE+ + E+
Sbjct: 41 TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H+R+AM G G F ++L G++ VW++AG+ F + L Q +L
Sbjct: 101 IHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 160
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M +I EG G EGL+P YPGG +PL LA+D E K+
Sbjct: 161 IWACQVVLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KE+KNGRLAM M G FVQA VT GPI+N+ +H++DP
Sbjct: 213 KELKNGRLAMFPMFGFFVQAIVTGKGPIENLFDHIADP 250
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 115/262 (43%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 50 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTR 109
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 110 FEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 163
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++LL+G+ E +R A
Sbjct: 164 AGKVELVDGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR-------------------NA 204
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T GP+
Sbjct: 205 ELDSEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 264
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TI T ++S
Sbjct: 265 NNWATHLSDPLHTTIFDTFSSS 286
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 112/218 (51%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLPGVDP--PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D + DPE+ + E+
Sbjct: 1 TVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEV 60
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F +LL G++ VW++AGA F + L Q +L
Sbjct: 61 IHCRWAMLGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 120
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 121 IWACQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 172
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 173 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 210
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 121/281 (43%), Gaps = 78/281 (27%)
Query: 36 LPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW-- 93
L K+ + +A + RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 35 LGGKAKPAPKKVAKTSTSSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFEL 94
Query: 94 -----------------------------------------YVQAELVHARFAMAGVAGI 112
+ + EL+H R+AM G
Sbjct: 95 DSLDQNLAKNEAGGIIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGA 154
Query: 113 LFTDLLRVTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYM 162
L + L TG+ W +AG VE S+ TL +++L++G+ E +R
Sbjct: 155 LSVEWL--TGV----TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-- 206
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 222
A L+ + YPGG +PLGLA D +L EIK+ RLA
Sbjct: 207 -----------------NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLA 249
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
MVA LG VQA+ T GP++N HLSDP H TI T S
Sbjct: 250 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFGGS 290
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 226 FFVQAIVTGKGPLENLADHLSDP 248
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLNDHLADP 251
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLNDHLADP 251
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G AGD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHIADP 250
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 123/261 (47%), Gaps = 46/261 (17%)
Query: 17 SSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYL------- 69
S+F+ V KS G +R + V++ + W G D P YL
Sbjct: 9 SAFVGQAVGKSQNEFVRKV--GSCGESRITMRRTVKSAPQSIWY-GEDRPKYLGPFSEQT 65
Query: 70 ----DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDKIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 229 VQAIVTGKGPIENLSDHINDP 249
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRI------- 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +MLG
Sbjct: 175 ----AGGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMLG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 226 FFVQAIVTGKGPLENLADHLSDP 248
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 113/227 (49%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+H R+AM G G +F ++L G+ VW++AG+ F S
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMGF E R G EGL+ YPGG +PLGLA D
Sbjct: 160 IWAAQVVLMGFVEGYR----------------VGGGPLGEGLDKIYPGGAF-DPLGLADD 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 203 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIK GRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 187 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLADHLADP 258
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 126
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 229
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 230 FFVQAIVTGKGPLENLNDHLADP 252
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 227 FVQAIVTGKGPIENLADHLTDP 248
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 120
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA------ 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 175 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 223
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 224 FFVQAIVTGKGPLENLADHLADP 246
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 118/262 (45%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 55 DRPLWYPGAISPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 114
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 115 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 168
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 169 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQR-------------------NA 209
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T GP+
Sbjct: 210 ELDSEKRLYPGGKYFDPLGLAADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 269
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TII T ++S
Sbjct: 270 NNWATHLSDPLHTTIIDTFSSS 291
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 104/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M I EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLI-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 179 GPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
PI N+ +H++DP
Sbjct: 238 PIQNLYDHVADP 249
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 91 PEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 126 LP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGSQT 171
P VW++ GA+ T F I +++L+G AE R ++ ++
Sbjct: 151 GPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN----- 204
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
E L +PGGP +PLGLA D A K+KEIKNGRLAM AMLG +
Sbjct: 205 -------FEDKL------HPGGPF-DPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 250
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA VT GP++N+ +HLSDP+ ++ ++ S
Sbjct: 251 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGS 282
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 115/239 (48%), Gaps = 34/239 (14%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G + R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG++P SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F L + + M AE +R PGG +
Sbjct: 124 PF-DLNALLAFEFVAMAAAEGQRRRCRRR----------------------RLPGG-AFD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
PLG AKD + E KLKEIKNGRLAMVA LG Q + T P+ + EHL++PW T+
Sbjct: 160 PLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKAPLAALGEHLANPWAPTL 218
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YP G +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 174 ------VGGGPLGEGLDKVYPSG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 227 VQAIVTGKGPIENLFDHVADP 247
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 74 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 133
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 134 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 187
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 188 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 236
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 237 FFVQAIVTGKGPIENLADHLADP 259
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 107/202 (52%), Gaps = 10/202 (4%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL+G + GD+G+DP GLG PE+ Y EL+HAR+AM G AG + + G
Sbjct: 102 DIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 161
Query: 124 RELP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
P VW++ GA+ T + F + + A + + + + +
Sbjct: 162 YCGPEAVWFKTGALLLD-GGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDD 220
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L +PGGP +PLGLAKD K+KEIKNGRLAM +MLG F+QA VT GP+
Sbjct: 221 KL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPV 273
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N+ HLSDP+ I+ L S
Sbjct: 274 ENLAAHLSDPFGNNILTVLGGS 295
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 187 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLADHLADP 258
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 116/262 (44%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 53 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 166
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 167 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 207
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T GP+
Sbjct: 208 ELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 267
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TI T ++S
Sbjct: 268 NNWATHLSDPLHTTIFDTFSSS 289
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL +G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNG LAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGALAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HL++P
Sbjct: 218 VQAIVTGKGPVQNLDDHLANP 238
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEVKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLNDHLADP 247
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDP 250
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 119/233 (51%), Gaps = 35/233 (15%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+R +LPG D P YL+G LAGD+G+DPLGLG+D E + Y EL+HAR+AM
Sbjct: 50 ERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLAA 109
Query: 110 AGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLF-----------------IVQLL 151
AGIL + L+ G + W+E GA E T F +++++
Sbjct: 110 AGILIPEGLQANGADIKGGTWFETGA-EMLNGGTLNYFAVPFGVVQNPLPLAAVTLIEIV 168
Query: 152 LMGFAETKRYMDY----ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
L+G E R SPG + F +GL+ YPGGP +PL LA D
Sbjct: 169 LLGAVEKFRVDGTGPAGFSPGVGKFDSDIF------DGLDQLYPGGP-FDPLNLADDPEV 221
Query: 208 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
E ++KE KNGRLAMV +L +Q+ VT GP N +H+SDP+ ++ L
Sbjct: 222 FAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVL 274
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 34/212 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM GVAG + + G
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGA 120
Query: 124 RELP--VWYEAGAVEFKFASTRTLF------------IVQLLLMGFAETKRYMDYISPGS 169
P VW++ GA+ +T F I +++L+G AE R ++ +
Sbjct: 121 NCGPEAVWFKTGALLLD-GNTLNYFGNSIPINLILAVIAEVVLVGGAEYYRIINGLD--- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +MLG
Sbjct: 177 ---------LEDKL------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGF 220
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
F+QA VT GP++N+ +HLSDP+ ++ ++
Sbjct: 221 FIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 252
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 24/227 (10%)
Query: 41 GTTRRYLATVVRAQQRPTWLPGVDP----------PPYLDGTLAGDFGFDPLGLGEDPES 90
G++R + V++ + W P P YL G GD+G+D GL DPE+
Sbjct: 31 GSSRTTMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 91 LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRT 144
+ E++H+R+AM G G +F ++L G++ VW++AG+ F +
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
L Q +L +A M I EG G EGL+ YPGG +PLGLA D
Sbjct: 151 LVHAQSILAIWASQVVLMGLI-------EGYRIGGGPLGEGLDSLYPGGAF-DPLGLADD 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 203 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADP 249
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F+ + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 178 GPLGEGLDKLYPGG-AFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 240 PIDNILEHLSDP 251
PI+N+ +HL+DP
Sbjct: 237 PIENLSDHLADP 248
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + +L Q +L +A M + EG
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAV-------EGYRI 175
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 176 AGGPLGEVTDPLYPGGSF-DPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFVQAIVTG 234
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 235 KGPLENLADHLADP 248
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 23/213 (10%)
Query: 55 QRPTWLPG-----VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
QR +LP D P YLDG LAGD+GFDPLGLG D +++ Y AE++HAR+AM V
Sbjct: 71 QRKLYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAV 129
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR--------TLFIVQLL-LMGFAETKR 160
GI+ + L + G W E G V + ++ R + + L+ LMG AE R
Sbjct: 130 PGIVIPEALNIAGGD----WRETGKVFLEGSTGRFGPAELWLGIAVAPLIVLMGGAEKFR 185
Query: 161 YMDYISP-GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
+P G +GSF G + A L+P PGGPL + +A ++ K+KEIKNG
Sbjct: 186 SDPASAPSGFVPFKGSFTGKDFA--KLDPINPGGPL-DFYNVAATPQDLEILKVKEIKNG 242
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 252
RLAM+AMLG+FVQ + T GP N +H++DP+
Sbjct: 243 RLAMIAMLGVFVQGATTGEGPAANWGKHVADPF 275
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 175 ----AGGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 28/206 (13%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V G+L + L
Sbjct: 19 WFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEAL 78
Query: 119 RVTGIRELPVWYEAG-------AVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 171
+ + W V + + T+ ++ L + FAE +R M+ +
Sbjct: 79 GLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEK---DPEK 135
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
K+ YPGG +PLG +KD E+KLKEI+NGRLAM+A +G V
Sbjct: 136 KK----------------YPGG-AFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCV 178
Query: 232 QAS-VTHVGPIDNILEHLSDPWHKTI 256
Q S GP++N+ HL+DPWH I
Sbjct: 179 QQSPYPGTGPLENLASHLADPWHNNI 204
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHIADP 250
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 112/208 (53%), Gaps = 28/208 (13%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 68 PAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 127
Query: 126 LP--VWYEAGAVEFKFASTRTL-----------FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + S + I +++L+G AE R S K
Sbjct: 128 GPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVGGAEYYR--------STNK 179
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
+ +GL+ L+ +PGG +PLGLAKD K+KEIKNGRLAM +MLG FVQ
Sbjct: 180 D--VYGLQ----DLDRLHPGGAF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQ 232
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTL 260
A VT GP++N+ HLSDP+ ++ +
Sbjct: 233 AYVTGEGPVENLAAHLSDPFGNNLLTVI 260
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
+PG P +LDG+ GDFGFDPLGL PE+ + ++E+ H R+AM V GIL + L
Sbjct: 1 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 60
Query: 120 VTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+ + W G + + + T+ +++ + + FAE +R M+ + K
Sbjct: 61 LGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEK---DPEKK 117
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
+ YPGG +PLG +KD E+KLKEIKNGRLAM+A +G VQ
Sbjct: 118 K----------------YPGG-AFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQ 160
Query: 233 ASV-THVGPIDNILEHLSDPWHKTI 256
S GP++N+ HL+DPWH I
Sbjct: 161 QSAYPGTGPLENLASHLADPWHNNI 185
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 113/218 (51%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ + RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 12 TVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 71
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G+ VW++AG+ F + L Q +L
Sbjct: 72 IHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA 131
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+ YPGG +PLGLA D E K+
Sbjct: 132 IWASQVVLMGFV-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKV 183
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 184 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLGXVT-----DPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G +F +LL G+
Sbjct: 65 EAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 106/205 (51%), Gaps = 33/205 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ R Y + EL+HAR+AM G G + ++L G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGG 111
Query: 124 REL--PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISP 167
VW++AG+ F+ S + Q++LMG E R
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRV------ 165
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 166 -----NGGPLG-----EGLDPLYPGDKF-DPLGLADDPDTFAELKIKEIKNGRLAMFSMF 214
Query: 228 GIFVQASVTHVGPIDNILEHLSDPW 252
G +VQA VT GPI+N EH+++P+
Sbjct: 215 GFYVQAVVTGKGPIENWAEHVANPF 239
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 126
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G + +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 -----GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 229
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 230 FFVQAIVTGKGPLENLNDHLADP 252
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 117/261 (44%), Gaps = 78/261 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 49 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTR 108
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 109 FESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 162
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 163 AGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-------------------NA 203
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA+D +L EIK+ RLAMVA LG VQA+VT GP+
Sbjct: 204 ELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPL 263
Query: 242 DNILEHLSDPWHKTIIQTLAN 262
+N HLSDP H TII ++
Sbjct: 264 NNWATHLSDPLHTTIIDNFSS 284
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 115/264 (43%), Gaps = 78/264 (29%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P YLDGTL GD+GFDP GLG+ E L++
Sbjct: 49 SSDRPLWFPGAVAPDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIG 108
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 109 TRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TW 162
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE S+ TL +++L++G+ E +R
Sbjct: 163 QDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR------------------- 203
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T G
Sbjct: 204 NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKG 263
Query: 240 PIDNILEHLSDPWHKTIIQTLANS 263
P++N HLSDP H TI T S
Sbjct: 264 PLNNWATHLSDPLHTTIFDTFGAS 287
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G + +LL G+
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLNDHLADP 247
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G L +LL G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTKF 114
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L Q++LMG E R ++ G
Sbjct: 115 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLIEGYR----VNGGP- 169
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 170 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 217
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HL++P
Sbjct: 218 VQAIVTGKGPVQNLDDHLANP 238
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 121/230 (52%), Gaps = 36/230 (15%)
Query: 55 QRPTWLPG--VDP---PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RP +LP +DP P Y++G LAGD+G+DPLGLG + Y E++H R+AM GV
Sbjct: 69 DRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGV 127
Query: 110 AGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTL------------FIVQLLLMGF 155
G+L + L G + VW+++GAV ++T T I ++ +
Sbjct: 128 VGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFL 187
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E RY ++G + GL+P YPGG +PLGLA D A E K+KE
Sbjct: 188 IENYRYQ---------QDGPWG------TGLDPLYPGGKYFDPLGLASDPSKADELKVKE 232
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 265
IKNGRLAM+A LG VQ VT GP N +HL+DP+ + T+ SGS
Sbjct: 233 IKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFL-TILGSGS 281
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK-----------FASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F F +++ + Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEVKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHIADP 250
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FVQAIVTGKGPVENLADHLADP 248
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 106/202 (52%), Gaps = 33/202 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL+ G+
Sbjct: 46 PSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVAS 105
Query: 126 L--PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AGA F+ S + + QL LMG E R ++ G
Sbjct: 106 FGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYR----VNGGP 161
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A EGL+ YPG +PLGLA D E K+KE+KNGRLAMV+M G
Sbjct: 162 ------------AGEGLDALYPG-EAFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGF 208
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQ VT GPI+N+ +HL+ P
Sbjct: 209 FVQGIVTKKGPIENLNDHLASP 230
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G +F +LL G+
Sbjct: 34 EAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGV 93
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 94 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA------ 147
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 148 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 196
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 197 FFVQAIVTGKGPLENLADHLADP 219
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL ++P++ Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ + +T F + + + + + + LE L
Sbjct: 145 GPEAVWFKTGALLLE-GNTLNYFGNSIPINLAVAVVAEVVLVGGAEYYRIINGLDLEGKL 203
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+PGGP +PLGLA D A K+KEIKNGRLAM MLG F+QA VT GP++N
Sbjct: 204 ------HPGGPF-DPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFIQAYVTGEGPVEN 256
Query: 244 ILEHLSDPWHKTIIQTLA 261
+ +HLSDP+ ++ ++
Sbjct: 257 LAKHLSDPFGNNLLTVIS 274
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 227 FFVQAIVTGNGPIENLADHLADP 249
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHITDP 250
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G + +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLNDHLADP 251
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL+G GD+G+D GL DPE+ E++H R+AM G G +F ++L + G+
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 126
Query: 125 -ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q+LLMG E R
Sbjct: 127 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 179
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL DP
Sbjct: 231 FVQAIVTGKGPLENLFDHLDDP 252
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 66 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLNDHLADP 251
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-R 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 157 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 216
Query: 125 ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 217 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 267
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G G E + YPGG +PLGLA D E K+KE+KNGRLAM AM G +
Sbjct: 268 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFY 319
Query: 231 VQASVTHVGPIDNILEHLSDPWH 253
VQA VT GP++N H++DP++
Sbjct: 320 VQALVTGEGPVENWAAHVADPFN 342
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI-R 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 397 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 456
Query: 125 ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R
Sbjct: 457 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRV--------- 507
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G G E + YPGG +PLGLA D E K+KE+KNGRLAM AM G +
Sbjct: 508 --NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFY 559
Query: 231 VQASVTHVGPIDNILEHLSDPWH 253
VQA VT GP++N H++DP++
Sbjct: 560 VQALVTGEGPVENWAAHVADPFN 582
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 17/113 (15%)
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
S + Q++LMG AE R G G E + YPGG +PLG
Sbjct: 7 SILAILAFQVVLMGLAEAYRV-----------NGGPLG-----EDSDALYPGG-AFDPLG 49
Query: 201 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 253
LA D E K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 50 LADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 102
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 21/198 (10%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL +DPE+ EL + R AM + G L VTG + W A F
Sbjct: 45 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQAL--VTGEGPVENWAAHVADPFN 102
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG------LEAALEGLEPGY-- 190
+++ Q A +P S K +++G L EG P Y
Sbjct: 103 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASD-KLAAWYGPNRNKWLGPFSEGSTPSYLT 161
Query: 191 ---PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 247
PG + GLA D +++ E+ + R AM+ LG+ ++ G
Sbjct: 162 GEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAG------VP 215
Query: 248 LSDP-WHKTIIQTLANSG 264
L++P W K Q + G
Sbjct: 216 LAEPVWFKAGAQIFSEGG 233
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRV------- 189
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D + K+KEIKNGRLAM +M G
Sbjct: 190 ----AGGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPIENLADHLADP 262
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ E++H R+AM G G +F ++L + G+
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 125
Query: 125 -ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q+LLMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRIN------- 178
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 229
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL DP
Sbjct: 230 FVQAIVTGKGPLENLFDHLDDP 251
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 117/262 (44%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PL LA D + +L EIK+ RLAMVA LG VQA+ T GP+
Sbjct: 209 ELDSEKRLYPGGKFFDPLSLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+N HLSDP H TII T ++S
Sbjct: 269 NNWATHLSDPLHTTIIDTFSSS 290
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLGDHITDP 250
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEVKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHIADP 250
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 124/251 (49%), Gaps = 22/251 (8%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSG--TTRRYLATVVRA----QQRPTWLP--GVDPP 66
S+F+ V KS + G T RR + + ++ + RP +L P
Sbjct: 7 QQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTP 66
Query: 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-E 125
YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG 126
Query: 126 LPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLE 180
VW++AGA F + L Q +L +A M I EG G
Sbjct: 127 EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLI-------EGYRVGGG 179
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
EGL+ YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP
Sbjct: 180 PLGEGLDKIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 241 IDNILEHLSDP 251
I+N+ + ++DP
Sbjct: 239 IENLFDQINDP 249
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 129/259 (49%), Gaps = 41/259 (15%)
Query: 10 LLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLP--GVDPPP 67
LLQP++ + V S +T +KS + ++ RP +L + P
Sbjct: 17 LLQPANE---LVRKVGTSQARVTMRKTVSKSSGSD----SIWYGADRPKFLGPFSGETPS 69
Query: 68 YLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-EL 126
YL+G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G++
Sbjct: 70 YLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGE 129
Query: 127 PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
VW++AGA F S ++ Q++LMG E R
Sbjct: 130 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA---------- 179
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
G G + +P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 180 -GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 233 ASVTHVGPIDNILEHLSDP 251
A VT GP++N+ +HL+DP
Sbjct: 233 AIVTGKGPLENLNDHLADP 251
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+ +D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 54 PSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 113
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------- 163
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 164 ------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 216
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 217 VQAIVTGKGPIENLFDHVADP 237
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 130/305 (42%), Gaps = 83/305 (27%)
Query: 14 SSSSSFICN---DVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLD 70
+++SSF+ DV SS + F G + RP W PG P +LD
Sbjct: 8 AATSSFMGTRFPDVYTSSGRFVARF--GFGGKKAAPKKASKQTSDRPLWYPGAVAPDWLD 65
Query: 71 GTLAGDFGFDPLGLGEDPESLRW------------------------------------- 93
G+L GD+GFDP GLG+ E L++
Sbjct: 66 GSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATPFQPYSE 125
Query: 94 ------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST----- 142
+ + EL+H R+AM G L + L TG+ W +AG VE S+
Sbjct: 126 VFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQDAGKVELVEGSSYLGQP 179
Query: 143 -----RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
TL +++L++GF E +R A L+ + YPGG +
Sbjct: 180 LPFSMTTLIWIEVLVIGFIEFQR-------------------NAELDPEKRLYPGGKYFD 220
Query: 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
PLGLA D +L EIK+ RLAMVA LG VQA+ T GP++N HLSDP H TII
Sbjct: 221 PLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 280
Query: 258 QTLAN 262
T +
Sbjct: 281 DTFTS 285
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R PG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG-PPG 182
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
E ++P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 183 ---------------EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPIENLADHLADP 249
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + EL+H+R+AM G G +F +LL G+
Sbjct: 32 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV 91
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 146 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 194
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 195 FFVQAIVTGKGPLENLADHLADP 217
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVIDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 107/194 (55%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV-------EGYRV 177
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 178 AGEPLGEVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTG 236
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 237 KGPLENLADHLADP 250
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV-------EGYRV 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 177 AGGPLGEVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 235
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 236 KGPLENLADHLADP 249
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S +++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D + E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EIVDPLYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP+DN+++HL+DP
Sbjct: 229 FFVQAIVTGKGPLDNLVDHLADP 251
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 140 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 199
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R ++ G
Sbjct: 200 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYR----VNGGPL 255
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
++ YPGG +PLGLA D E K+KE+KNGRLAM AM G +
Sbjct: 256 GEDSDAL------------YPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFY 302
Query: 231 VQASVTHVGPIDNILEHLSDPWH 253
VQA VT GP++N H++DP++
Sbjct: 303 VQALVTGEGPVENWAAHVADPFN 325
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 380 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 439
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R ++ G
Sbjct: 440 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYR----VNGGPL 495
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
++ YPGG +PLGLA D E K+KE+KNGRLAM AM G +
Sbjct: 496 GEDSDAL------------YPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFY 542
Query: 231 VQASVTHVGPIDNILEHLSDPWH 253
VQA VT GP++N H++DP++
Sbjct: 543 VQALVTGEGPVENWAAHVADPFN 565
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DP + Y +AEL+HAR+AM G G++F + L G+
Sbjct: 620 PSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPL 679
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
PVW++AGA F S + Q++LMG AE R ++ G
Sbjct: 680 AEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYR----VNGGPL 735
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
++ YPGG +PLGLA D E K+KE+KNGRLAM AM G +
Sbjct: 736 GEDSDAL------------YPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFY 782
Query: 231 VQASVTHVGPIDNILEHLSDPWH 253
VQA VT GP++N H++DP++
Sbjct: 783 VQALVTGEGPVENWAAHVADPFN 805
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
YPGG +PLGLA D E K+KE+KNGRLAM AM G +VQA VT GP++N H++
Sbjct: 23 YPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVA 81
Query: 250 DPWH 253
DP++
Sbjct: 82 DPFN 85
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 21/198 (10%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL +DPE+ EL + R AM + G L VTG + W A F
Sbjct: 28 FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQAL--VTGEGPVENWAAHVADPFN 85
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG------LEAALEGLEPGY-- 190
+++ Q A +P S K +++G L EG P Y
Sbjct: 86 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASD-KLAAWYGPNRNKWLGPFSEGSTPSYLT 144
Query: 191 ---PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 247
PG + GLA D +++ E+ + R AM+ LG+ ++ G
Sbjct: 145 GEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAG------VP 198
Query: 248 LSDP-WHKTIIQTLANSG 264
L++P W K Q + G
Sbjct: 199 LAEPVWFKAGAQIFSEGG 216
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 114/220 (51%), Gaps = 36/220 (16%)
Query: 55 QRPTWLPGV---DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAG 111
RP WL D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 16 DRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALG 75
Query: 112 ILFTDLL-RVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGF 155
+ ++L + G+ VW++AG+ F+ S + Q++LMG
Sbjct: 76 CVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGL 135
Query: 156 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 215
E R G G EGL+P +PG +PLGLA D E K+KE
Sbjct: 136 IEAYRV-----------NGGPLG-----EGLDPLHPGDKF-DPLGLADDPDTFAELKVKE 178
Query: 216 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 255
IKNGRLAM +M G +VQA VT GPI+N +H++DP++ T
Sbjct: 179 IKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFNVT 218
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 117/264 (44%), Gaps = 78/264 (29%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 51 STDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIG 110
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TG+ W
Sbjct: 111 TRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TW 164
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE S+ TL +++L++G+ E +R
Sbjct: 165 QDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR------------------- 205
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T G
Sbjct: 206 NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKG 265
Query: 240 PIDNILEHLSDPWHKTIIQTLANS 263
P++N HLSDP H TII T ++S
Sbjct: 266 PLNNWATHLSDPLHTTIIDTFSSS 289
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 10/198 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL ++P++ Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ + +T F + + + + + + LE L
Sbjct: 145 GPEAVWFKTGALLLE-GNTLNYFGNSIPINLAVAVVAEVVLVGGAEYYRIINGLDLEDKL 203
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N
Sbjct: 204 ------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVEN 256
Query: 244 ILEHLSDPWHKTIIQTLA 261
+ +HLSDP+ ++ ++
Sbjct: 257 LAKHLSDPFGNNLLTVIS 274
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 116/215 (53%), Gaps = 27/215 (12%)
Query: 40 SGTTRRYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
S T+R+ + A + +W+P V P +LDG+L GDFGFDPLGLG+DP L+W
Sbjct: 41 STTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 100
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLL 151
Y +AEL+H R+AM V GI TGI W+EAGA A S TL QLL
Sbjct: 101 YREAELIHGRWAMLAVLGIFVGQAW--TGIP----WFEAGADPGAVAPFSFGTLLGTQLL 154
Query: 152 LMGFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207
LMG+ E+KR++D+ P SQ+ E S + E GYPGG +PL LA I N
Sbjct: 155 LMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISN 214
Query: 208 A---------REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ RLAM+AML + +A
Sbjct: 215 GVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY-----PG 192
K +S LF+ + G + T R + ++ + K+ ++ L+P + PG
Sbjct: 23 KKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPG 82
Query: 193 GPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
+PLGL KD + ++ E+ +GR AM+A+LGIFV + T +
Sbjct: 83 DFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI 128
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDP 250
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 29/193 (15%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
W PG P YLDG++AGD+GFDPL LG + ESL + +AEL++ R+AM G+L TD
Sbjct: 2 WYPGATAPDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIGVLATD-- 59
Query: 119 RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
LP ++EAGA ++ +TL + Q+++MG E R ++ G
Sbjct: 60 ---SNPSLPKFWEAGAADYDI-DFKTLVVTQVIVMGILEALRIRGFMKTGES-------- 107
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
GL +P +P G+ D AR +KE+KNGRLAMVA LG+ Q +VT +
Sbjct: 108 ------GLGANFP----FDPAGM--DSPAAR---VKEVKNGRLAMVAFLGMVSQWAVTGM 152
Query: 239 GPIDNILEHLSDP 251
GPI+ HL+DP
Sbjct: 153 GPIEGFKAHLADP 165
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV-------EGYRI 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 177 AGGPLGEITDPIYPGGSF-DPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 236 KGPLENLADHLADP 249
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV-------EGYRI 176
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 177 AGGPLGEVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 236 KGPLENLADHLTDP 249
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 32 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 91
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 146 -----GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 194
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +H++DP
Sbjct: 195 FFVQAIVTGKGPIENLADHIADP 217
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 106 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 165
M G AGI + L G+ P WY AG +E+ F T TLFIV+L +G+AE +R+ D I
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPSWYSAGELEY-FTDTTTLFIVELFFIGWAEGRRWADII 59
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 224
PG + F L G + GYPGG +PLG + ++ + KEIKNGRLAM+
Sbjct: 60 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAML 117
Query: 225 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 118 AVMGAWFQHIYTATGPIDNLFAHLADPGHATIF 150
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G F ++L G+
Sbjct: 64 PSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNGVNF 123
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F + S ++ VQ++LMGF E R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYR---------- 173
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+ YPGG + LGLA+D E+K+KE NGRLAM +MLG F
Sbjct: 174 ------VGGGPLGEGLDKVYPGG-AFDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFF 226
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N +H++DP
Sbjct: 227 VQAIVTGKGPIENFFDHVADP 247
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP +L G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 73 EPPSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 187 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIENLADHLADP 258
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 180 -----GGPLG-----EITDPLYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPIENLADHLADP 251
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 59 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 118
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 119 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 172
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 173 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 221
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 222 FFVQAIVTGKGPLENLADHLADP 244
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + ++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRIGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 177 GPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 235
Query: 240 PIDNILEHLSDP 251
PI+N+ +H++DP
Sbjct: 236 PIENLFDHVADP 247
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q +LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHITDP 250
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 124
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ F+ + L Q +L +A M I EG G
Sbjct: 125 GEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI-------EGYRVGG 177
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 178 GPLGEGLDKIYPGGAF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 236
Query: 240 PIDNILEHLSDP 251
PI+N+ +HL+DP
Sbjct: 237 PIENLSDHLADP 248
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 111/211 (52%), Gaps = 29/211 (13%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 26 PEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLGAAGFVLPEAFNKFGAVC 85
Query: 126 LP--VWYEAGAVEFK------FASTRTL-----FIVQLLLMGFAETKRYMDYISPGSQTK 172
P VW++ GA+ + F +T L I +++L+G AE R + GS
Sbjct: 86 GPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVGGAEYYRSTNKSPLGSD-- 143
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
L+ +PGG +PLGLAKD K+KEIKNGRLAM +MLG FVQ
Sbjct: 144 -------------LDRLHPGGAF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQ 189
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ HLSDP+ ++ + +
Sbjct: 190 AYVTGEGPVENLSAHLSDPFGNNLLTVIQGT 220
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G AGD+G+D GL DPE+ + E++HAR+AM G G L +LL +G+
Sbjct: 64 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLNDHLADP 249
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 66 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 180 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 126
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 127 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 181 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 229
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 230 FFVQAIVTGKGPLENLADHLSDP 252
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 184 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 237 KGPLENLADHLADP 250
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW+ AG+ F S ++ Q++LMG E R
Sbjct: 120 KFGEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 174 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 222
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 223 FFVQAIVTGKGPLENLADHIADP 245
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 54 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 113
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 114 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 167
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 168 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 216
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 217 FFVQAIVTGKGPLENLADHLADP 239
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R I+ G
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR----IAGG 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
K +P YPGG +PLGLA D E K+KEIKNGR AM +M G
Sbjct: 178 PLGKV------------TDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRSAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 227 FVQAIVTGKGPLENLADHIADP 248
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 128/263 (48%), Gaps = 46/263 (17%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVR--AQQRPTWLP---------GV 63
SSSSF+ V S +S+ + T R AT + + P + P
Sbjct: 9 SSSSFVGKAVKLSP---SSSEITGNGKVTMRKTATKAKPVSSGSPWYGPDRVKYLGPFSG 65
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 117/261 (44%), Gaps = 78/261 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 50 DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTR 109
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 110 TEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQD 163
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R +
Sbjct: 164 AGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-------------------NS 204
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA+D +L EIK+ RLAMVA LG VQA+VT GP+
Sbjct: 205 ELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGKGPL 264
Query: 242 DNILEHLSDPWHKTIIQTLAN 262
+N HLSDP H TII ++
Sbjct: 265 NNWATHLSDPLHTTIIDNFSS 285
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKF 123
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 176
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KN RLAM +M G FVQA VT G
Sbjct: 177 GPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNSRLAMFSMFGFFVQAIVTGKG 235
Query: 240 PIDNILEHLSDP 251
PI+N+ +H++DP
Sbjct: 236 PIENLADHVADP 247
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 120
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 174
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 175 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 223
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 224 FFVQAIVTGKGPLENLADHIADP 246
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AGA F + L Q +L +A M ++ EG G
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV-------EGYRVGG 178
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
GL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 179 GPLGWGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 240 PIDNILEHLSDP 251
PI+N+ +HL+DP
Sbjct: 238 PIENLYDHLADP 249
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + EG
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 184 EAEDLL------YPGGSF-DPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 237 KGPLENLADHLADP 250
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HLSDP
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDP 250
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI-------- 177
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 ---AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEVKNGRLAMFSMFGF 228
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 229 FVQAIVTGKGPLENLADHITDP 250
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 124 R-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R ++ G
Sbjct: 97 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR----VAGG 152
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
K P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 153 PLGKVTG------------PLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 199
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 200 FFVQAIVTGKGPLENLADHLADP 222
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 109/204 (53%), Gaps = 34/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R--ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISP 167
+ E+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEV-VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA----- 177
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M
Sbjct: 178 ------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+ +HL+DP
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADP 249
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 73 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 132
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 133 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 186
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRL M +M G
Sbjct: 187 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLTMFSMFG 235
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+++ +HL+DP
Sbjct: 236 FFVQAIVTGKGPIEDLADHLADP 258
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 59 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 118
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 119 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 171
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 172 ----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 221
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 222 FVQAIVTGKGPLENLADHIADP 243
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 115/260 (44%), Gaps = 78/260 (30%)
Query: 57 PTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW----------------------- 93
P W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 55 PLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTE 114
Query: 94 --------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG 133
+ + EL+H R+AM G L + L TG+ W +AG
Sbjct: 115 LADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQDAG 168
Query: 134 AVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
VE S+ TL +++L++G+ E +R A L
Sbjct: 169 KVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-------------------NAEL 209
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T GP++N
Sbjct: 210 DPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNN 269
Query: 244 ILEHLSDPWHKTIIQTLANS 263
HLSDP H TII T ++S
Sbjct: 270 WATHLSDPLHTTIIDTFSSS 289
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 113/261 (43%), Gaps = 78/261 (29%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYV-------------------- 95
RP W PG P YLDGTL GD+GFDP GLG+ E L++ V
Sbjct: 51 RPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRF 110
Query: 96 -----------------------QAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
+ EL+H R+AM G L + L TG+ W +A
Sbjct: 111 EDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGV----TWQDA 164
Query: 133 GAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
G VE S+ TL +++L++G+ E +R A
Sbjct: 165 GKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQR-------------------NAE 205
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
L+ YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T G ++
Sbjct: 206 LDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGRLN 265
Query: 243 NILEHLSDPWHKTIIQTLANS 263
N HLSDP H TI T +S
Sbjct: 266 NWATHLSDPLHTTIFDTFGSS 286
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++ G+ F + +L Q +L +A M + EG
Sbjct: 126 KFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAV-------EGYRV 178
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 179 AGEPLGEVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 238 KGPLENLADHLADP 251
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 107/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 102 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 161
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 162 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV-------- 213
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 214 ---AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 264
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 265 FVQAIVTGKGPLENLADHLADP 286
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 126/265 (47%), Gaps = 50/265 (18%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP--------- 65
SSSSF V SS +S+ + T R TV +A+ + P P
Sbjct: 9 SSSSFAGKAVKLSS---SSSEITGNGKVTMR--KTVTKAKPASSSSPWYGPDRVKYLGPF 63
Query: 66 ----PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
P YL G D+G+D GL DPE+ + E++H R+AM G G +F +L
Sbjct: 64 SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 123
Query: 122 GIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYIS 166
GI+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 GIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA---- 179
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M
Sbjct: 180 -------GGPLG-----EVIDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+ +HL+DP
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADP 251
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 228 FFVQAIVTGKGPLENLADHIADP 250
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PL LA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLRLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 233 FFVQAIVTGKGPIENLADHLADP 255
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 126/266 (47%), Gaps = 47/266 (17%)
Query: 5 VGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKS---GTTR-RYLATVVRAQQRPTWL 60
G+ L PSS+S + N T P+ S G R +YL
Sbjct: 15 AGQAVKLSPSSASELMGNGRVSMRKAATKKVAPSGSPWYGPDRVKYLGPFSG-------- 66
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL
Sbjct: 67 ---EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 123
Query: 121 TGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYI 165
G++ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA--- 180
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +
Sbjct: 181 --------GGPLG-----EVVDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFS 226
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDP 251
M G FVQA VT GP++N+ +HL DP
Sbjct: 227 MFGFFVQAIVTGKGPLENLADHLFDP 252
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KEIKNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPLYPGGSF-DPLGFADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 22 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 81
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q+LLMG E R
Sbjct: 82 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVA------ 135
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 136 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 184
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 185 FFVQAIVTGKGPLENLADHLADP 207
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 107/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV-------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 ---AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 227
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FVQAIVTGKGPLENLADHLADP 249
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F+ S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E + P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVNPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 32/211 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFK------FASTRTLFIVQLLLM-----GFAETKRYMDYISPGSQTK 172
P VW++ GA+ F ++ + ++ + G AE R ++ +
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLD------ 198
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+Q
Sbjct: 199 ------LEDKL------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQ 245
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 246 AYVTGEGPVENLSKHLSDPFGNNLLTVISGA 276
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 32/211 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
Query: 126 LP--VWYEAGAVEFK------FASTRTLFIVQLLLM-----GFAETKRYMDYISPGSQTK 172
P VW++ GA+ F ++ + ++ + G AE R ++ +
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLD------ 198
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+Q
Sbjct: 199 ------LEDKL------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQ 245
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 246 AYVTGEGPVENLSKHLSDPFGNNLLTVISGA 276
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 116/265 (43%), Gaps = 78/265 (29%)
Query: 52 RAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------ 93
R RP W PG P +LDGTL GD+GFDP GLG+ E L++
Sbjct: 49 RVSDRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVI 108
Query: 94 -------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128
+ + EL+H R+AM G L + L TG+
Sbjct: 109 GTRFEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESL--TGV----T 162
Query: 129 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 178
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 WQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR------------------ 204
Query: 179 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
A L+ + YPGG +PLGLA D +L EIK+ RLAM+ LG VQA+VT
Sbjct: 205 -NAELDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTGK 263
Query: 239 GPIDNILEHLSDPWHKTIIQTLANS 263
GP++N HLSDP H TII + S
Sbjct: 264 GPLNNWATHLSDPLHTTIIDNVFYS 288
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 115/227 (50%), Gaps = 34/227 (14%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + ++ RP +L + P YL+G AGD+G+D GL DPE+ + E+
Sbjct: 40 TASKSSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRT 144
+HAR+AM G G + +LL G++ VW++AGA F S
Sbjct: 100 IHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILA 159
Query: 145 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
++ Q++LMG E R G G + +P YPGG +PLGLA D
Sbjct: 160 IWASQVILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADD 202
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 203 PDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 249
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 32/211 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 83
Query: 126 LP--VWYEAGAVEFK------FASTRTLFIVQLLLM-----GFAETKRYMDYISPGSQTK 172
P VW++ GA+ F ++ + ++ + G AE R ++ +
Sbjct: 84 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLD------ 137
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+Q
Sbjct: 138 ------LEDKL------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQ 184
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 185 AYVTGEGPVENLSKHLSDPFGNNLLTVISGA 215
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 32/211 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 126 LP--VWYEAGAVEFK------FASTRTLFIVQLLLM-----GFAETKRYMDYISPGSQTK 172
P VW++ GA+ F ++ + ++ + G AE R ++ +
Sbjct: 63 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLD------ 116
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
LE L +PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+Q
Sbjct: 117 ------LEDKL------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQ 163
Query: 233 ASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
A VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 164 AYVTGEGPVENLSKHLSDPFGNNLLTVISGA 194
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 125/265 (47%), Gaps = 51/265 (19%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDP--------- 65
SSSSF VN S +S T R+ TV +A+ + P P
Sbjct: 9 SSSSFAGKAVNVPS---SSQITGNGKATMRK---TVTKAKPVSSGSPWYGPDRVKYLGPF 62
Query: 66 ----PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVT 121
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +L
Sbjct: 63 SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 122
Query: 122 GIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYIS 166
G++ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA---- 178
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 179 -------GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+ +HL+DP
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADP 250
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 106/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNGVQF 124
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F S ++ Q++LMGF E R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------- 174
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G E L+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F
Sbjct: 175 ------VGGGPLGEDLDKLYPGG-AFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 227
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP++N+++H++DP
Sbjct: 228 VQAIVTGKGPVENLVDHIADP 248
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 NSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 ----AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 34/214 (15%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
RP +L + + P YL G AGD+G+D GL DPE+ + E++HAR+AM G G
Sbjct: 51 DRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 110
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAE 157
+ +LL G++ VW++AG+ F S ++ Q++LMG E
Sbjct: 111 VTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVE 170
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G E +P YPGG +PLGLA D E K+KEIK
Sbjct: 171 GYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIK 213
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
NGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 247
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 118/233 (50%), Gaps = 40/233 (17%)
Query: 42 TTRRYLATVVRAQ------QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW 93
T RR ++ R+ RP +L + P YL+G AGD+G+D GL D E+
Sbjct: 36 TMRRTVSKSARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFAR 95
Query: 94 YVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA------------ 140
+ E++HAR+AM G G L +LL +G++ VW++AGA F
Sbjct: 96 NRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 141 --STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 198
S ++ Q++LMG E R G G E +P YPGG +P
Sbjct: 156 AQSILAIWACQVVLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DP 198
Query: 199 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
LGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 199 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 32 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 91
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 146 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 194
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 195 FFVQAIVTGKGPLENLADHIADP 217
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 117/272 (43%), Gaps = 78/272 (28%)
Query: 45 RYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW----------- 93
+ +A + RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 44 KKVAKTSISSDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAK 103
Query: 94 --------------------------------YVQAELVHARFAMAGVAGILFTDLLRVT 121
+ + EL+H R+AM G L + L T
Sbjct: 104 NEAGGIIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--T 161
Query: 122 GIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQT 171
G+ W +AG VE S+ TL +++L++G+ E +R
Sbjct: 162 GV----TWQDAGKVELVDGSSYLGQPLPFTISTLIWIEVLVIGYIEFQR----------- 206
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
A L+ + YPGG +PL LA D +L EIK+ RLAMVA LG V
Sbjct: 207 --------NAELDPEKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAV 258
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263
QA+ T GP++N HLSDP H TI T S
Sbjct: 259 QAAATGKGPLNNWATHLSDPLHTTIFDTFGGS 290
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL GI
Sbjct: 62 ESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGI 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ FK S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLSDHLADP 247
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 106/202 (52%), Gaps = 33/202 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL+ G
Sbjct: 45 PSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAAN 104
Query: 126 L--PVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AGA F+ S + + Q++LMG E R ++ G
Sbjct: 105 FGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGYR----VNGGP 160
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A E +P YPG +PLGLA D E K+KEIKNGRLAMV+M G
Sbjct: 161 ------------AGEITDPIYPG-EAFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGF 207
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
F+QA VT GPI+N+ +HL+ P
Sbjct: 208 FIQAIVTGKGPIENLNDHLAAP 229
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 105/200 (52%), Gaps = 33/200 (16%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL-- 126
L G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L G
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 127 PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
VW+ AGA FK S + I Q++LMG E R ++ G
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP--- 113
Query: 173 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G +VQ
Sbjct: 114 ---------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQ 163
Query: 233 ASVTHVGPIDNILEHLSDPW 252
A VT GP++N EH++DP+
Sbjct: 164 AIVTGKGPVENWAEHVADPF 183
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 105/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL+G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 63 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 122
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q+LLMG E R
Sbjct: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 175
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 --------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 226
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
F+QA VT GP++N+L+HL DP
Sbjct: 227 FIQAIVTGKGPLENLLDHLDDP 248
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 105/201 (52%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G +LL +G +
Sbjct: 54 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKF 113
Query: 125 ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F L VQ++LMG E R ++ G
Sbjct: 114 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGP- 168
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
A EGL+P YPG +PLGLA D E K+KEIKNGRLA +M G F
Sbjct: 169 -----------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFF 216
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GP+ N+ +HL++P
Sbjct: 217 VQAIVTGKGPVQNLDDHLANP 237
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL GI
Sbjct: 71 ESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGI 130
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ FK S ++ Q++LMG E R
Sbjct: 131 KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIA------ 184
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 185 -----GGPLG-----EVTDPIYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 233
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 234 FFVQAIVTGKGPLENLSDHLADP 256
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL+G AGD+G+D GL DPE+ + E++HAR+AM G G + +LL +G+
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G + +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLNDHLADP 251
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+++HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLVDHLADP 251
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 76 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGV 135
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 136 KFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIA------ 189
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 190 -----GGPLG-----EITDPLYPGNSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 238
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 239 FFVQAIVTGKGPLENLADHLADP 261
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 120/245 (48%), Gaps = 49/245 (20%)
Query: 39 KSGTTRRYLATVVRAQQ-------------RPTWLPGVDP---PPYLDGTLAGDFGFDPL 82
KSG + +AT V Q+ R WL P YL G GD+G+D
Sbjct: 87 KSGLSMNQIATAVTCQKIGGAACQEWYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQ 146
Query: 83 GLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--- 137
GL DP + Y + E++HAR+AM G G + +LL + +G+ PVW++AG+ F
Sbjct: 147 GLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEG 206
Query: 138 -----------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL 186
S + Q++LMG AE R ++ G A EGL
Sbjct: 207 GLDYLGNPSLIHAQSILAILACQVVLMGGAEAYR----VNGGP------------AGEGL 250
Query: 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 246
+ PGG +PLGLA D E K+KEIKNGRLAM +MLG +VQA T GP++N E
Sbjct: 251 DAINPGGAF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAE 309
Query: 247 HLSDP 251
H++DP
Sbjct: 310 HIADP 314
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 179 -----GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H+ DP
Sbjct: 228 FFVQAIVTGKGPLENLADHIVDP 250
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F+ S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA E K+KEIKNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADVPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 112/218 (51%), Gaps = 16/218 (7%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T + A++ RP +L P YL G GD+G+D GL DPE+ + E+
Sbjct: 40 TVKSVPASIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 99
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
+H R+AM G G +F ++L G++ VW++AGA F + L Q +L
Sbjct: 100 IHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 159
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M ++ EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 160 IWATQVVLMGFV-------EGYRIGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKV 211
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA V GPI+N+ + L+ P
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAP 249
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 104/192 (54%), Gaps = 14/192 (7%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G + +LL GI+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIKF 127
Query: 125 ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
VW++AG+ FK + L Q +L +A M + EG G
Sbjct: 128 GEAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQVILMGAV-------EGYRVGG 180
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D E K+KE+KNGRLAM +M G F QA VT G
Sbjct: 181 GPLGEGLDKIYPGG-AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKG 239
Query: 240 PIDNILEHLSDP 251
PI+N+L+HL +P
Sbjct: 240 PIENLLDHLDNP 251
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D + K+KE+KNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGG-TFDPLGLADDPEAFADVKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 112/235 (47%), Gaps = 41/235 (17%)
Query: 41 GTTRRYLATVVRAQ------QRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLR 92
G + R V RA R WL D P YL G GD+G+D GL DPE+
Sbjct: 18 GASARGQKQVTRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFA 77
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGIREL--PVWYEAGAVEF------------- 137
Y + EL+HAR+AM G G + +LL E VW++AGA F
Sbjct: 78 SYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSL 137
Query: 138 -KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLL 196
S + Q++LMG AE R G G E L+ +PGG
Sbjct: 138 VHAQSILAILGCQVVLMGGAEAFRV-----------NGGPLG-----EDLDKLHPGGAF- 180
Query: 197 NPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
+PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N EH++DP
Sbjct: 181 DPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADP 235
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 33/202 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 205
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 206 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 261
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A EGL+ PGG +PLGLA D E K+KEIKNGRLAM +MLG
Sbjct: 262 ------------AGEGLDAINPGGAF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 308
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+VQA T GP++N EH++DP
Sbjct: 309 YVQAIATGKGPVENWAEHIADP 330
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 48 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 107
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 108 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 161
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 162 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 210
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 211 FFVQAIVTGKGPLENLADHLADP 233
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DP++ + E++H+R+AM G G +F +LL G+
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 120
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 121 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI------- 173
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 174 ----AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 223
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 224 FFVQAIVTGKGPLENLADHIADP 246
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 68 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 127
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 128 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 181
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 182 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 230
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 231 FFVQAIVTGKGPLENLADHLADP 253
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + G++G+DP GL + PE Y EL+HAR+AM G AG + + G
Sbjct: 88 PEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 147
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + + + + LE L
Sbjct: 148 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLILAVVAEVVLVGGAEYYRIINGLDLEDKL 206
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+PGGP +PLGLAKD A K+KEIKNGRLAM +MLG F+QA VT GP++N
Sbjct: 207 ------HPGGPF-DPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVEN 259
Query: 244 ILEHLSDPWHKTIIQTLANS 263
+ HLSDP+ ++ + +
Sbjct: 260 LAAHLSDPFGNNLLTVIGGA 279
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 107/207 (51%), Gaps = 34/207 (16%)
Query: 55 QRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGI 112
+RP +L +PP YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G
Sbjct: 45 ERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGC 104
Query: 113 LFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAE 157
+F +LL G+ VW++AGA F+ S + Q+LLMG E
Sbjct: 105 IFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIE 164
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R G G EGL+ YPGG +PLGLA D E K+KEIK
Sbjct: 165 GYRV-----------NGGPLG-----EGLDKLYPGGS-FDPLGLADDPDTFAELKVKEIK 207
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNI 244
NGRLAM +M G FVQA VT GP+ N+
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 116/262 (44%), Gaps = 78/262 (29%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P +LDG+L GD+GFDP GLG+ E L++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TG+ W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQD 167
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 181
AG VE S+ TL +++L++G+ E +R A
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-------------------NA 208
Query: 182 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T GP
Sbjct: 209 ELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPR 268
Query: 242 DNILEHLSDPWHKTIIQTLANS 263
+ HLSDP H TII T ++S
Sbjct: 269 NYWATHLSDPLHTTIIDTFSSS 290
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 120 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 179
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 180 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 238 VGPIDNILEHLSDP 251
GPI+N+ +HL+DP
Sbjct: 233 KGPIENLADHLADP 246
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 90
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 91 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 144
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 145 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 193
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 194 FFVQAIVTGKGPLENLADHLADP 216
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 63 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++ G+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 107/206 (51%), Gaps = 32/206 (15%)
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P P YL+G GD+G+D GL DPE+ Y + E++HAR+AM G G + +LL
Sbjct: 47 PFTKSPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAK 106
Query: 121 TGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYI 165
G+ VW++AG+ F S + Q+LLMG E R +
Sbjct: 107 NGVSFGEAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYR----V 162
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
+ G A EGL+ YPG +PLGLA D E ++KEIKNGRLAM +
Sbjct: 163 NGGP------------AGEGLDALYPG-EAFDPLGLADDPDTFAELRVKEIKNGRLAMFS 209
Query: 226 MLGIFVQASVTHVGPIDNILEHLSDP 251
M G FVQA VT GPI+N+ +HL++P
Sbjct: 210 MFGFFVQAIVTGKGPIENLADHLANP 235
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 120 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 179
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 180 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 238 VGPIDNILEHLSDP 251
GPI+N+ +HL+DP
Sbjct: 233 KGPIENLADHLADP 246
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 114/260 (43%), Gaps = 78/260 (30%)
Query: 56 RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW---------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 51 RPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRT 110
Query: 94 ---------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132
+ + EL+H R+AM G L + L TG+ W +A
Sbjct: 111 EFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--TGV----TWQDA 164
Query: 133 GAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 182
G VE S+ L ++ +++G+ E +R A
Sbjct: 165 GKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQR-------------------NAE 205
Query: 183 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 242
L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT GP++
Sbjct: 206 LDPEKRLYPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLN 265
Query: 243 NILEHLSDPWHKTIIQTLAN 262
N HLSDP H TII L++
Sbjct: 266 NWATHLSDPLHTTIIDNLSS 285
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 105/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL+G GD+G+D GL DPE+ E++H R+AM G G +F ++L V
Sbjct: 64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVD 123
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 124 FKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGF 227
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 228 FVQAIVTGKGPLENLLDHLDNP 249
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ VQ++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRI------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 177 ----AGGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP+ N+ +H++DP
Sbjct: 227 FFVQAIVTGKGPLKNLADHIADP 249
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+K IKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKHIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 101/195 (51%), Gaps = 32/195 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F ++L G++
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ VQ++LMGF E R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR---------- 175
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
G EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 176 ------VGGGPLGEGLDPIYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 231 VQASVTHVGPIDNIL 245
VQA VT GPI+N L
Sbjct: 229 VQAIVTGKGPIENSL 243
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 ESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 33/202 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 205
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 206 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 261
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A EGL+ PGG +PLGLA D E K+KEIKNGRLAM +MLG
Sbjct: 262 ------------AGEGLDAINPGGAF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 308
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+VQA T GP++N EH++DP
Sbjct: 309 YVQAISTGKGPVENWAEHIADP 330
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 114/219 (52%), Gaps = 34/219 (15%)
Query: 48 ATVVRAQQRPTWLPGVD-PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 106
A+ + + RP LPG+ PPP+L GTLAGD GFDPL LG+ PESL V+ EL+HAR+AM
Sbjct: 170 ASPLYGEARP-LLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAM 228
Query: 107 AGVAGILFTDLLRVTG------IRELPVWYEAGAVE-------------FKFASTRTLFI 147
V G+ + L + G PVW++ GA + F A + + +
Sbjct: 229 LAVVGVAVPEALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAV 288
Query: 148 V---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKD 204
+ Q +LMG E Y Y+ S G + +A YPGG +P GL+ D
Sbjct: 289 IAACQAVLMGGPE---YARYVGIRSLEPVGVYLPGDA-------NYPGGAPFDPFGLSDD 338
Query: 205 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
K+ EI++GRLAMVAMLG F QA VT GP+ N
Sbjct: 339 ADRFARQKVIEIEHGRLAMVAMLGCFAQAIVTGEGPVAN 377
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 104/201 (51%), Gaps = 32/201 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLS 249
FVQA VT GPI+N+ +HL+
Sbjct: 233 FFVQAIVTGKGPIENLADHLA 253
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAG 133
GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++ VW++AG
Sbjct: 5 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG 64
Query: 134 AVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP 188
A F + L Q +L +A M I EG G EGL+P
Sbjct: 65 AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI-------EGYRVGGGPLGEGLDP 117
Query: 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHL 248
YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL
Sbjct: 118 LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHL 176
Query: 249 SDP 251
+DP
Sbjct: 177 ADP 179
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 32 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 91
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 92 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 145
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 146 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 194
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 195 FFVQAIVTGKGPLENLADHLADP 217
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G GI+F + L G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEPLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM ++ G
Sbjct: 176 -----GGPLG-----EVTDPTYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSVFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 69 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 128
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 129 KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 182
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 183 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 231
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 232 FFVQAIVTGKGPIENLADHLADP 254
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV 90
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 91 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 144
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 145 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 194 FFVQAIVTGKGPLENLADHLADP 216
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+G E L YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 --AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 104/201 (51%), Gaps = 32/201 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLS 249
FVQA VT GPI+N+ +HL+
Sbjct: 233 FFVQAIVTGKGPIENLADHLA 253
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 33/202 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 133 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 192
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 193 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 248
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A EGL+ PGG +PLGLA D E K+KEIKNGRLAM +MLG
Sbjct: 249 ------------AGEGLDAINPGGAF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 295
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+VQA T GP++N EH++DP
Sbjct: 296 YVQAIATGKGPVENWAEHIADP 317
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 111/214 (51%), Gaps = 28/214 (13%)
Query: 50 VVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
RA RP W PG + P +L G L D+GFDPL LGE P++L Y +AEL+HAR+AM GV
Sbjct: 25 TARASARPMWFPGAEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGV 84
Query: 110 AGILFTDLL-RVTGIRELPVWYEAGAVEFKFASTRTLFI---VQLLLMGFAETKRYMDYI 165
AG + ++ + P ++A A + LF V +L+ FAE++R
Sbjct: 85 AGAVGVEIAGQGDWASAQPTTWDATAKYLGNETHAPLFAVIGVNGVLVAFAESQR----- 139
Query: 166 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225
Q G EA L YPGG +P GL+K ++ K KE+ NGR+AM+A
Sbjct: 140 ----QAATG-----EARL------YPGGS-FDPAGLSKG-KDFETLKRKELANGRVAMMA 182
Query: 226 MLGIFV--QASVTHVGPIDNILEHLSDPWHKTII 257
GI QA + GP+ + HL+DPWH +
Sbjct: 183 FFGIMAQHQADPSGPGPVKQLANHLADPWHVNVC 216
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 20/223 (8%)
Query: 37 PAKSGTTRRYLATVVRAQQRPTWLPGVD--PPPYLDGTLAGDFGFDPLGLGEDPESLRWY 94
P K+ T+ ++ RP +L PP YL G GD+G+D GL DPE+
Sbjct: 40 PKKASTS----GSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 95 VQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF-----KFASTRTLFIV 148
+ EL+HAR+AM G G + +LL G++ VW++AG+ F + +L
Sbjct: 96 RELELIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHA 155
Query: 149 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 208
Q +L +A M + G + G +E +P YPGG +PLGLA D
Sbjct: 156 QSILAIWAFQVVLMGAVE-GYRVAGGPLGEVE------DPLYPGGSF-DPLGLADDPEAF 207
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 250
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV------- 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+G E L YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 176 --AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -----GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ + L+DP
Sbjct: 227 FFVQAIVTGKGPLENLADPLADP 249
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124
PP YL G GD+G+D GL DPE+ + E++H+R+AM G G + +LL G++
Sbjct: 65 PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVK 124
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F S ++ Q++LMG E G
Sbjct: 125 FGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE----------GY 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
+ G +E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 175 RVAGGPLGEVE------DPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 227
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 228 FVQAIVTGKGPIENLSDHLADP 249
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 106/205 (51%), Gaps = 32/205 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DP + Y + EL+HAR+AM G G + +LL G
Sbjct: 44 DTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLGALGCVVPELLAKNGT 103
Query: 124 RELP---VWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYIS 166
LP VW++AGA F S Q+++MG AE+ R+
Sbjct: 104 -PLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVVVMGAAESFRF----- 157
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
+ G F LEG + YPG +P+GLA+D E K+KEIKNGRLAM +M
Sbjct: 158 --NGGAPGGF------LEGNDRLYPGD-QFDPMGLAEDPDTFAELKVKEIKNGRLAMFSM 208
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GPI N+ HL+DP
Sbjct: 209 FGFFVQAIVTGQGPIANLDAHLADP 233
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 33/202 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DP + Y + E++HAR+AM G G + +LL + +G+
Sbjct: 145 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 204
Query: 125 -ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGS 169
PVW++AG+ F S + Q++LMG AE R ++ G
Sbjct: 205 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYR----VNGGP 260
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A EGL+ PGG +PLGLA D E K+KEIKNGRLAM +MLG
Sbjct: 261 ------------AGEGLDAINPGGAF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMLGF 307
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
+VQA T GP++N EH++DP
Sbjct: 308 YVQAISTGKGPVENWAEHIADP 329
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 28 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 87
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 88 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------ 141
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 142 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 190
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 191 FFVQAIVTGKGPLENLADHLADP 213
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 111/199 (55%), Gaps = 27/199 (13%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P V PP+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AM+ V
Sbjct: 46 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 105
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISP 167
GI +G+ W+EAGA A S TL QLLLMG+ E+KR++D+ SP
Sbjct: 106 LGIFVGQAW--SGVP----WFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSP 159
Query: 168 GSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNAREWKLK 214
SQ+ E S A E GYPGG +PLGL D KL
Sbjct: 160 DSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLGGITQDGVYIPDADKLERLKLA 219
Query: 215 EIKNGRLAMVAMLGIFVQA 233
EIK+ R+AM+AML + +A
Sbjct: 220 EIKHARVAMLAMLIFYFEA 238
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 127
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN------- 180
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGGP +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 --------GLPGVGEGNDL-YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 231
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 232 FVQAIVTGKGPLENLLDHLDNP 253
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 127
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN------- 180
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGGP +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 --------GLPGVGEGNDL-YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 231
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 232 FVQAIVTGKGPLENLLDHLDNP 253
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+K GRLAM++M G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +H++DP
Sbjct: 227 FFVQAIVTGKGPLENLADHIADP 249
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G E E + YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 179 ---------GNEPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPIENLADHLADP 251
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 61 PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120
P D P Y+DGTLAGD+GFDPL LG D + Y AE++HAR+AM + GI+ + L +
Sbjct: 98 PATDVPSYMDGTLAGDYGFDPLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGI 156
Query: 121 TGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRYMDYISP-GSQT 171
G VW E G V + R + +Q+ L E R P G
Sbjct: 157 PG----GVWTETGKVFLDGEAGRPEILQNPIIFAGIQIALFAAVEGYRSGKVAPPEGFVP 212
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
+G F G + A GL+P PGGPL + +A + K+KEIKNGRLAM+AMLG+FV
Sbjct: 213 GKGKFSGSDFA--GLDPINPGGPL-DFFNVASTPEDLAILKVKEIKNGRLAMIAMLGVFV 269
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTLA 261
Q T GP N +H++DP+ + A
Sbjct: 270 QGLTTGEGPAANWGKHVADPFGYNFVTISA 299
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 104/199 (52%), Gaps = 34/199 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL G GD+G+D GL DP++ Y + E++HAR+AM G G + +LL T
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGALGCVVPELLDGT---N 112
Query: 126 LPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQT 171
W+ AGA F + L IVQ++LM + E R ++ G
Sbjct: 113 HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVILMSYVEGYR----VNGGP-- 166
Query: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
A GL+ YPGG +PLGLA D E K+KEIKNGRLAM++M G F+
Sbjct: 167 ----------AGTGLDAVYPGGSF-DPLGLADDPDTFSELKVKEIKNGRLAMLSMFGFFI 215
Query: 232 QASVTHVGPIDNILEHLSD 250
QA VT GPI+N+ +HL+D
Sbjct: 216 QAIVTGEGPIENLNKHLAD 234
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVATAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ PG +PLGL KD + ++ E+ +GR AM A++GIFV + + +
Sbjct: 36 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 90
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 32/192 (16%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAG 133
GD+G+D GL DPE+ + E++H+R+AM G G +F ++L G++ VW++AG
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 134 AVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
A F S ++ Q++LMGF E R G
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----------------VGG 104
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
EGL+ YPGG +PLGLA D A E K+KE+KNGRLAM +M G FVQA VT G
Sbjct: 105 GPLGEGLDKVYPGGAF-DPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 163
Query: 240 PIDNILEHLSDP 251
PI+N+ +H++DP
Sbjct: 164 PIENLFDHVADP 175
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YL+G + GD+G+DP GL + P+ Y EL+HAR+AM G AG + + G
Sbjct: 88 PEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 147
Query: 126 LP--VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 183
P VW++ GA+ +T F + + + + + + LE L
Sbjct: 148 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRIINGLDLEDKL 206
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N
Sbjct: 207 ------HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVEN 259
Query: 244 ILEHLSDPWHKTIIQTLANS 263
+ HLSDP+ ++ ++ +
Sbjct: 260 LSAHLSDPFGNNLLTVISGA 279
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ PG +PLGL KD + ++ E+ +GR AM A++GIFV + + +
Sbjct: 36 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 90
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ PG +PLGL KD + ++ E+ +GR AM A++GIFV + + +
Sbjct: 36 EWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 90
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 29 IGITSAFLPAKSGTTRRYLATVVRAQQ--RPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE 86
+G + +K+ RR V A Q RP W PG PPP+LDG+L DFGFDPLGLG
Sbjct: 44 VGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFGFDPLGLGS 103
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF 137
DPE+L+W VQ+ELVH R+AM G AGI +LL GI P WY AG E+
Sbjct: 104 DPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEY 154
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 103
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ W++AG+ F + ++L Q +L +A M + EG
Sbjct: 104 KFGEACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAV-------EGYRI 156
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E +P YPGG +PL LA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 157 AGGPLGEVTDPIYPGGSF-DPLALADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 215
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 216 KGPLENLADHLADP 229
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 106/198 (53%), Gaps = 34/198 (17%)
Query: 71 GTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR--ELP 127
G GD+G+D GL DPE+ + Y + EL+HAR + G G++ +LL GI+ +
Sbjct: 78 GEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAA 137
Query: 128 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 173
+W++AGA F+ L VQ++LMG E R ++ G
Sbjct: 138 IWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGGP---- 189
Query: 174 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 233
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM A LG FVQA
Sbjct: 190 --------AGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQA 240
Query: 234 SVTHVGPIDNILEHLSDP 251
VT GPI+N+ +HL++P
Sbjct: 241 IVTGKGPIENLTDHLANP 258
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 109/212 (51%), Gaps = 35/212 (16%)
Query: 55 QRPTWLPG-VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
RP +L P YL+G GD+G+D GL DPE+ Y + E++HAR+AM G GI+
Sbjct: 70 DRPGYLGAFTRSPSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALGIV 129
Query: 114 FTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------------VQLLLMGFAETK 159
+LL T W++AGA F + L + VQ++LMG E
Sbjct: 130 VPELLDQT---NHVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQVILMGAIEGY 186
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219
R ++ G A EGL+ YPG +PLGLA D E K+KEIKNG
Sbjct: 187 R----VNGGP------------AGEGLDKVYPG-ESFDPLGLADDPDTFAELKVKEIKNG 229
Query: 220 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
RLAM + G FVQA VT GPI N+ +HL++P
Sbjct: 230 RLAMFSNFGFFVQAIVTGKGPIANLNDHLANP 261
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 115/205 (56%), Gaps = 27/205 (13%)
Query: 50 VVRAQQRPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHAR 103
VV A + +WLPGV P +LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R
Sbjct: 47 VVAAAPKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGR 106
Query: 104 FAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRY 161
+AMA V GI +GI W+EAGA A S TL QLLLMG+ E+KR+
Sbjct: 107 WAMAAVVGIFVGQAW--SGIP----WFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRW 160
Query: 162 MDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNA 208
+D+ +P SQ+ E S A E GYPGG +PL LA D+
Sbjct: 161 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDVEKL 220
Query: 209 REWKLKEIKNGRLAMVAMLGIFVQA 233
KL EIK+ R+AM+AML + +A
Sbjct: 221 ERLKLAEIKHARIAMLAMLIFYFEA 245
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 EFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+G E L YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 --AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLADP 250
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGV 90
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 91 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 144
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 145 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 194 FFVQAIVTGKGPLENLADHLADP 216
>gi|192764597|gb|ACF05842.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V GI +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWAPPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238
E L+ PG +PLGL KD + ++ E+ +GR AM A++GIFV + + +
Sbjct: 36 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 90
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 111/199 (55%), Gaps = 27/199 (13%)
Query: 56 RPTWLPGVDP------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGV 109
+ +W+P V PP+LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AM+ V
Sbjct: 48 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 107
Query: 110 AGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISP 167
GI +G+ W+EAGA A S TL QLLLMG+ E+KR++D+ SP
Sbjct: 108 LGIFVGRAW--SGVP----WFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSP 161
Query: 168 GSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA---------KDIRNAREWKLK 214
SQ+ E S A E GYPGG +PLGL D KL
Sbjct: 162 DSQSVEWATPWSRTADNFANATGEQGYPGGKFFDPLGLGGITQDGVYIPDADKLERLKLA 221
Query: 215 EIKNGRLAMVAMLGIFVQA 233
EIK+ R+AM+AML + +A
Sbjct: 222 EIKHARVAMLAMLIFYFEA 240
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 176 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+ P
Sbjct: 225 FFVQAIVTGKGPLENLADHLAGP 247
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 43 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 102
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 103 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 162
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 163 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 215
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 216 KGPLENLADHLADP 229
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+ +AM G G +F +LL G+
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 65 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 118
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 119 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 167
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 168 FFVQAIVTGKGPLENLADHLADP 190
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 62 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 176 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 225 FFVQAIVTGKGPLENLADHLADP 247
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 124 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 183
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 184 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 237 KGPLENLSDHLADP 250
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLG A D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGPADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP Y G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+K+GRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKHGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 111/227 (48%), Gaps = 34/227 (14%)
Query: 55 QRPTWL-PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
R T+L P D P YL G GD+G+D +GL DPE+ Y + EL+HAR+AM G G
Sbjct: 49 DRVTFLGPFTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCF 108
Query: 114 FTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAE 157
+ L + +GI VW++AG F+ L +Q LLMG E
Sbjct: 109 LPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVE 168
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R + G + G + YPGG +PLGL D E K+KEIK
Sbjct: 169 GYR----VGGGPLGEAG------------DKMYPGGSF-DPLGLGDDPDTLAELKVKEIK 211
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
NGRLAM +M G F+QA VT GP++N+ HL+DP+ +SG
Sbjct: 212 NGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNNGFAYATSSG 258
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 126
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN------- 179
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 --------GLDGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL DP
Sbjct: 231 FVQAIVTGKGPLENLLDHLDDP 252
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 105/205 (51%), Gaps = 32/205 (15%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122
V P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 123 IREL--PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
E PVW++AG+ F +++ V Q++LMG E R
Sbjct: 121 RVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---- 176
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 177 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 224
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+L+H+ DP
Sbjct: 225 FGFFVQAIVTGKGPLENLLDHIDDP 249
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 127
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN------- 180
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 --------GLDGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 231
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL DP
Sbjct: 232 FVQAIVTGKGPLENLLDHLDDP 253
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 110/224 (49%), Gaps = 34/224 (15%)
Query: 28 SIGITSAFLPAKSGTTRRYLATVVRAQ----QRPTWLPGVDPPPYLDGTLAGDFGFDPLG 83
S+ SA A G + R +A V + WLPG D P +L L G++GFDPL
Sbjct: 4 SMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLS 63
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAG------AVEF 137
LG++P SL+ + ++E++H R+AM GVAG L +LL + P+W G +E
Sbjct: 64 LGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEV 123
Query: 138 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLN 197
F L + + M AE +R G G+ YPGG +
Sbjct: 124 PF-DLNALLAFEFVAMAAAEGQR-------------GDAGGVV---------YPGG-AFD 159
Query: 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241
PLG AKD + E KLKEIKNGRLAMVA LG Q + T GPI
Sbjct: 160 PLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPI 203
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 111/227 (48%), Gaps = 34/227 (14%)
Query: 55 QRPTWL-PGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGIL 113
R T+L P D P YL G GD+G+D +GL DPE+ Y + EL+HAR+AM G G
Sbjct: 49 DRVTFLGPFTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCF 108
Query: 114 FTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAE 157
+ L + +GI VW++AG F+ L +Q LLMG E
Sbjct: 109 LPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVE 168
Query: 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 217
R + G + G + YPGG +PLGL D E K+KEIK
Sbjct: 169 GYR----VGGGPLGEAG------------DKMYPGGSF-DPLGLGDDPDTLAELKVKEIK 211
Query: 218 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 264
NGRLAM +M G F+QA VT GP++N+ HL+DP+ +SG
Sbjct: 212 NGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNNGFAYATSSG 258
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 116/226 (51%), Gaps = 30/226 (13%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPE-------SLRWYVQAELVHARFAMAGVAGI 112
LP V YLDGTL GD GFDPLGL DP S RW AE+VH R+AM G AG
Sbjct: 12 LPSVSSLSYLDGTLPGDMGFDPLGL-FDPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGC 70
Query: 113 LFTDLL-------RVTGIRELPVWYEAG-----AVEFKFASTRT-LFIVQLLLMGFAETK 159
L + L + TG+ +W++ G + F + T LF++Q+ LMG E+
Sbjct: 71 LAPEYLAHEKVIPKATGL----LWFKTGFLPPVSAGFDYGLPVTALFLIQMGLMGTVESL 126
Query: 160 RYMDYISPGSQTKEGSFFGLEAALEGLEP----GYPGGPLLNPLGL-AKDIRNAREWKLK 214
R+ + +PGS A L G YPGG + NPLGL A RE++
Sbjct: 127 RWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMREYQQS 186
Query: 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
EI++GRLAMVA LG QA VT GP N + HL DP + ++ L
Sbjct: 187 EIRHGRLAMVACLGYAAQAVVTGKGPYTNWVAHLEDPDIENVVVLL 232
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 108/218 (49%), Gaps = 29/218 (13%)
Query: 42 TTRRYLATVVRAQQRPTWLP--GVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAEL 99
T R ++ RP +L P YL G GD+G+D GL DPE+
Sbjct: 41 TVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET--------- 91
Query: 100 VHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLM 153
FAM G G +F +LL TG++ VW++AGA F + L Q +L
Sbjct: 92 ----FAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILA 147
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKL 213
+A M I EG G EGL+P YPGG +PLGLA D E K+
Sbjct: 148 IWASQVVLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKV 199
Query: 214 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 251
KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 200 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 237
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D L DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + +++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+G E L YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 --AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
F QA VT GP++N+ +HL+DP
Sbjct: 229 FFAQAIVTGKGPLENLADHLADP 251
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 106/211 (50%), Gaps = 32/211 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G F +LL G+
Sbjct: 64 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGV 123
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------ 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KEIKNGRLAM + G
Sbjct: 178 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSTFG 226
Query: 229 IFVQASVTHVGPIDNILEHLSDPWHKTIIQT 259
FVQA VT GP++N+ +HL+DP + T
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNNACPT 257
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 108/203 (53%), Gaps = 33/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ Y + E++H+R+A+ G GI+ +LL + G++
Sbjct: 53 PSYLKGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVK 112
Query: 125 -ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGS 169
+ VW++AGA F L Q++L+G AE R ++ G
Sbjct: 113 FQEAVWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYR----VNGGP 168
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
A E +P YPGG +PLGLA D E K+KEIKNGRLA A LG
Sbjct: 169 ------------AGEITDPLYPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAQFAALGF 215
Query: 230 FVQASVTHVGPIDNILEHLSDPW 252
FVQA VT GPI N+ +HL+DP+
Sbjct: 216 FVQAIVTGKGPIQNLEDHLADPF 238
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 118/242 (48%), Gaps = 37/242 (15%)
Query: 33 SAFLPAKSGTTRRYLATVVRAQQRPTWLPGVD-----------------PPPYLDGTLAG 75
SA PA+ GT + A RP PG++ P Y G
Sbjct: 15 SARPPARRGTGKT-------AASRPPPAPGIEFYGPNRAKWLGPYSENATPAYRLAKFPG 67
Query: 76 DFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGA 134
D+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL +G + VW++AGA
Sbjct: 68 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGA 127
Query: 135 VEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 189
F + +L Q + K + + G + G A EGL+P
Sbjct: 128 QIFSEGGLDYLGNPSLVHAQNIRRHPGRFKVILMGLVEGYRVNGGP------AGEGLDPL 181
Query: 190 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI N+ +HLS
Sbjct: 182 YPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLS 240
Query: 250 DP 251
+P
Sbjct: 241 NP 242
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 34/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L
Sbjct: 67 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AGA F +++ V Q++LMG E R
Sbjct: 127 FKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR-------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 178 -------INGLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 230 FFVQAIVTGKGPLENLLDHLDNP 252
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 130
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 131 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN------- 183
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 184 --------GLDGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 234
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL DP
Sbjct: 235 FVQAIVTGKGPLENLLDHLDDP 256
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 106/205 (51%), Gaps = 32/205 (15%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--V 120
V P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 121 TGIRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---- 176
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 177 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 224
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+L+HL +P
Sbjct: 225 FGFFVQAIVTGKGPLENLLDHLDNP 249
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 106/205 (51%), Gaps = 32/205 (15%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--V 120
V P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 121 TGIRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---- 176
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 177 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 224
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+L+HL +P
Sbjct: 225 FGFFVQAIVTGKGPLENLLDHLDNP 249
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 34/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L
Sbjct: 66 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR-------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 -------INGLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 229 FFVQAIVTGKGPLENLLDHLDNP 251
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 113/260 (43%), Gaps = 79/260 (30%)
Query: 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW--------------------- 93
RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 47 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTR 106
Query: 94 ----------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE 131
+ + EL+H R+AM G L + L TGI W +
Sbjct: 107 TELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--TGI----TWQD 160
Query: 132 AGAVEFKFAST----------RTLFIVQLLLMGF-AETKRYMDYISPGSQTKEGSFFGLE 180
AG VE S+ TL +++L++G+ E +R
Sbjct: 161 AGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIVEFQR-------------------N 201
Query: 181 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T GP
Sbjct: 202 AELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGP 261
Query: 241 IDNILEHLSDPWHKTIIQTL 260
++N HLSDP H TI T
Sbjct: 262 LNNWATHLSDPLHTTIFDTF 281
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 105/203 (51%), Gaps = 34/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL+G GD+G+D GL DPE+ E++H R+AM G G + ++L
Sbjct: 63 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AG+ F +++ V Q++LMG E R
Sbjct: 123 FKE-PVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------ 175
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ---------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL DP
Sbjct: 226 FFVQAIVTGKGPLENLLDHLDDP 248
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 31 EAPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 90
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AGA F + +L Q +L +A M + G + G
Sbjct: 91 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE-GYRIAGGPLG 149
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
+E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G FV A VT
Sbjct: 150 EVE------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVXAIVTG 202
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL+DP
Sbjct: 203 KGPLENLADHLADP 216
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 44 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 103
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ W++AG+ F + ++L Q +L +A M + EG
Sbjct: 104 KFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAV-------EGYRI 156
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E +P YPGG +PL LA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 157 AGGPLGEVTDPIYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 215
Query: 238 VGPIDNILEHLSDP 251
GP++N+ +HL++P
Sbjct: 216 KGPLENLADHLAEP 229
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G AGD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 66 PSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 125
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR--------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E ++KEIKNGRLAM +M G
Sbjct: 177 ------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFSMFGF 229
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 230 FVQAIVTGKGPLENLLDHLDNP 251
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 63 EAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 122
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA------ 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM ++ G
Sbjct: 177 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSIFG 225
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 226 FFVQAIVTGKGPLENLADHLADP 248
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 104/201 (51%), Gaps = 32/201 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G++ G+ DPE+ + E++H+R+AM G G +F ++L G++
Sbjct: 30 PSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 89
Query: 125 ELPVWYEAGAVEF--------------KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 170
VW++AGA F S ++ Q++LMGF E
Sbjct: 90 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYGVG-------- 141
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
EGL+ YPGG PLGLA D A E K+KE+KNGRLAM +M G F
Sbjct: 142 --------GGPLGEGLDKVYPGG-AFEPLGLADDPDTAAELKVKELKNGRLAMFSMFGFF 192
Query: 231 VQASVTHVGPIDNILEHLSDP 251
VQA VT GPI+N+ +H++DP
Sbjct: 193 VQAIVTGKGPIENLFDHVADP 213
>gi|125656346|gb|ABN48563.1| chloroplast PSI type III chlorophyll a/b-binding protein [Brassica
juncea]
Length = 110
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Query: 154 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWK 212
GFAE +R D+ +PGS K+ F GLE G P YPGGP NPLG KD ++ +E K
Sbjct: 1 GFAEHRRLQDWYNPGSMGKQ-YFLGLEKGFAGSGNPAYPGGPFFNPLGFGKDEKSMKELK 59
Query: 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
LKE+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP + ++ +L
Sbjct: 60 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 107
>gi|307106431|gb|EFN54677.1| hypothetical protein CHLNCDRAFT_24450 [Chlorella variabilis]
Length = 189
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 99/184 (53%), Gaps = 32/184 (17%)
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF 139
DPLGLG D + L+WY +AE + R+AMA VAGILFTD+L P W+EAGA E+ +
Sbjct: 28 DPLGLGVDSDRLKWYTEAEKTNGRWAMAAVAGILFTDVLGK------PKWFEAGAQEY-W 80
Query: 140 ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199
L ++ L++GF E KR+ + G+ G +P +P
Sbjct: 81 MDNNALLAIEFLVLGFLELKRFQGWKETGTS--------------GFLNAFP----FDPA 122
Query: 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS--VTHVGPIDNILEHLSDPWHKTII 257
G+ N+ KE+KNGRLAMVA +G VQAS VT GP++ + HLS P+ I
Sbjct: 123 GM-----NSPSMATKEVKNGRLAMVAFIGFCVQASALVTREGPVEALQSHLSSPFENNFI 177
Query: 258 QTLA 261
++A
Sbjct: 178 GSIA 181
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G E L YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 --AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPIENLADHLADP 251
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G E L YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 178 --AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GPI+N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPIENLADHLADP 251
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL+G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 126
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 179
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 230
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 231 FVQAIVTGKGPLENLLDHLDNP 252
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 53 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 112
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 113 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 166
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 167 -----GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFG 215
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ + L+DP
Sbjct: 216 FFVQAIVTGKGPLENLADRLADP 238
>gi|192764591|gb|ACF05839.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764593|gb|ACF05840.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 24/173 (13%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA-----VEFKFASTRTLFIVQLLLM 153
L+H R+AMA V I +GI W+EAGA F F S L QL+LM
Sbjct: 68 LIHGRWAMAAVVSIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQLILM 118
Query: 154 GFAETKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
G+ E+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 119 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 102/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ EL+H R+AM G G +F ++L + G+
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRIN------- 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLG A D E K+KEIKNGRLAM +M G
Sbjct: 175 --------GLPDVGEGGDL-YPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGF 225
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL +P
Sbjct: 226 FVQAIVTGKGPLENLFDHLDNP 247
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 104/201 (51%), Gaps = 32/201 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 70 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 129
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 130 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 183
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G
Sbjct: 184 -----GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAELKVKELKNGRLAMFSMFG 232
Query: 229 IFVQASVTHVGPIDNILEHLS 249
F QA VT GPI+N+ +HL+
Sbjct: 233 FFXQAIVTGKGPIENLADHLA 253
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 106/204 (51%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L + G
Sbjct: 43 DVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAG 102
Query: 123 IR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AG+ F+ S + Q++LMG E R
Sbjct: 103 VSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRV------ 156
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+ +PG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 157 -----NGGPLG-----EGLDVLHPG-EKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 205
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G +VQA VT GPI+N EH++DP
Sbjct: 206 GFYVQAIVTGKGPIENWAEHVADP 229
>gi|192764575|gb|ACF05831.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 16/169 (9%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-FKFASTRTLFIVQLLLMGFAE 157
L+H R+AMA V GI +GI + GA+ F F S L QL+LMG+ E
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIPWFEACADPGAIAPFSFGS---LLGTQLILMGWVE 122
Query: 158 TKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 123 SKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
E L+ PG +PLGL KD + ++ E+ +GR AM A++GIFV + + +
Sbjct: 36 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 91
Query: 244 ILEHLSDP 251
E +DP
Sbjct: 92 WFEACADP 99
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 102/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ EL+H R+AM G G +F ++L + G+
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRIN------- 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLG A D E K+KEIKNGRLAM +M G
Sbjct: 175 --------GLPDVGEGGDL-YPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGF 225
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL +P
Sbjct: 226 FVQAIVTGKGPLENLFDHLDNP 247
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 34/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWLRVD 125
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR-------- 176
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 -------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 229 FFVQAIVTGKGPLENLLDHLDNP 251
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 31/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL PE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R PG
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV-----PG 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
+G E L YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 180 ----DGPLGEAEDLL------YPGGSF-DPLGLATDPVAFAELKVKEIKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 229 FFVQAIVTGKGPLENLADHLADP 251
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 106/204 (51%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTG 122
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L + G
Sbjct: 43 DVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAG 102
Query: 123 IR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISP 167
+ VW++AG+ F+ S + Q++LMG E R
Sbjct: 103 VSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRV------ 156
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G G EGL+ +PG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 157 -----NGGPLG-----EGLDVLHPG-EKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 205
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G +VQA VT GPI+N EH++DP
Sbjct: 206 GFYVQAIVTGKGPIENWAEHVADP 229
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 103/203 (50%), Gaps = 34/203 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRV---TG 122
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L
Sbjct: 68 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 127
Query: 123 IRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPG 168
+E PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 FKE-PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------ 180
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 181 ---------GLDGVGEGNNL-YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFG 230
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 231 FFVQAIVTGKGPLENLLDHLDNP 253
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 124/269 (46%), Gaps = 59/269 (21%)
Query: 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRR----YLATVVRAQQRPTWLPGVDP----- 65
SSSSF VN +P+ S TR TV +A+ + P P
Sbjct: 9 SSSSFAGKAVN----------VPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKY 58
Query: 66 --------PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDL 117
P YL G GD+G+D GL DP + + E++H R+ M G G +F +L
Sbjct: 59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPEL 118
Query: 118 LRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYM 162
G++ VW++AG+ FK S ++ Q++LMG E R
Sbjct: 119 FARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 222
G G E ++P YPGG +PLGLA D E ++KEIKNGRLA
Sbjct: 179 -----------GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLA 221
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDP 251
M +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 RELPV-WYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ W++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+ + E K+KEIKNGRLAM +M G
Sbjct: 178 ----AGGPLG-----EIVDPLYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++++ +H++DP
Sbjct: 228 FFVQAIVTGKGPLEDLADHIADP 250
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 103/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 47 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 106
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 107 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 166
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 167 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 219
Query: 238 VGPIDNILEHLSDP 251
GPI+N+ +HL+DP
Sbjct: 220 KGPIENLADHLADP 233
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 16/169 (9%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-FKFASTRTLFIVQLLLMGFAE 157
L+H R+AMA V GI +GI + GA+ F F S L QL+LMG+ E
Sbjct: 68 LIHGRWAMAAVVGIFVGQAW--SGIPWFEACADPGAIAPFSFGS---LLGTQLILMGWVE 122
Query: 158 TKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 123 SKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 184 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
E L+ PG +PLGL KD + ++ E+ +GR AM A++GIFV + + +
Sbjct: 36 EWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 91
Query: 244 ILEHLSDP 251
E +DP
Sbjct: 92 WFEACADP 99
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVS 125
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR--------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 ------INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 229
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+H+ +P
Sbjct: 230 FVQAIVTGKGPLENLLDHIDNP 251
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 65 PSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 124
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 125 FKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR--------- 175
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL +G + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ------INGLPGVGDGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 228
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL+DP
Sbjct: 229 FVQAIVTGKGPLENLLDHLADP 250
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 65 PSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 124
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 125 FKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR--------- 175
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL +G + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 ------INGLPGVGDGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 228
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL+DP
Sbjct: 229 FVQAIVTGKGPLENLLDHLADP 250
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 103/194 (53%), Gaps = 13/194 (6%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 90
Query: 124 R-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 177
+ VW++AG+ F + +L Q +L +A M + G
Sbjct: 91 KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG 150
Query: 178 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237
E L YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT
Sbjct: 151 EAEDLL------YPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 203
Query: 238 VGPIDNILEHLSDP 251
GPI+N+ +HL+DP
Sbjct: 204 KGPIENLADHLADP 217
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 106/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 65 EPPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV------- 177
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+ + K+KEIKNGRLAM +M G
Sbjct: 178 ----AGGPLG-----EIVDPLYPGG-RFDPLGLAERPQAFDALKVKEIKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
VQA VT GP++N+ +H++DP
Sbjct: 228 FLVQAIVTGKGPLENLADHIADP 250
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 175 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGF 225
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 226 FVQAIVTGKGPLENLLDHLDNP 247
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 174
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 175 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGF 225
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 226 FVQAIVTGKGPLENLLDHLDNP 247
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 42/224 (18%)
Query: 44 RRYLATVVRAQQRPTWLPG-VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHA 102
++ + V +R W PG V P +LDG+L GDFG+DPLGL +DP SL Y +AE+++
Sbjct: 26 KKTDSRVTCMAERKLWAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNG 85
Query: 103 RFAMAGVAGILFTDLL-----------RVTGIRELPVWYEAGAVEFKFASTRTLFIVQLL 151
R+AM GVAG+L +L+ VTG + Y + + F T+ V+
Sbjct: 86 RWAMLGVAGMLAPELVGQGTWLSAQDWAVTGGKPT---YLGNELPYGFG---TVLAVEFF 139
Query: 152 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 211
+ + E R GLE + ++ YPGG +PLG KD N
Sbjct: 140 CLSWVEISR-----------------GLEK--DPMKRIYPGGA-FDPLGFGKDEVN---- 175
Query: 212 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 255
K+KE++NGRLAMVA +G++ Q GP+ N+++HL+DP H
Sbjct: 176 KVKELRNGRLAMVAFVGMWCQGIHVGGGPVSNLMDHLADPLHNN 219
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 65 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AG+ F S ++ Q++LMG E R
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------ 178
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E ++P YPGG +PLGLA+D E K+KE+KNGRLAM +M G
Sbjct: 179 -----GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ + L+DP
Sbjct: 228 FFVQAIVTGKGPLENLADPLADP 250
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 103/203 (50%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 77 EQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV 136
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S + Q++LMG E R
Sbjct: 137 KFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------ 190
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLG A D E K+KE+KNGRLAM +M G
Sbjct: 191 -----GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+ +HL+DP
Sbjct: 240 FFVQAIVTGKGPLENLADHLADP 262
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 108/206 (52%), Gaps = 33/206 (16%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL-RVTGIR 124
P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L + G+
Sbjct: 26 PSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 85
Query: 125 -ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGS 169
VW++AG+ F+ S + Q++LMG E R
Sbjct: 86 FGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRV-------- 137
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
G G EGL+ +PG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 138 ---NGGPLG-----EGLDTLHPG-ESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 188
Query: 230 FVQASVTHVGPIDNILEHLSDPWHKT 255
+VQA VT GPI+N +H++DP++ T
Sbjct: 189 YVQAIVTGKGPIENWADHVADPFNVT 214
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 122
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q++LMG E+ R
Sbjct: 123 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRIN------- 175
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 176 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGF 226
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 227 FVQAIVTGKGPLENLLDHLDNP 248
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 104/204 (50%), Gaps = 33/204 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YL G GD+G+D GL DPE+ + Y + EL+HAR+AM G G + ++L
Sbjct: 43 DVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAG 102
Query: 124 REL--PVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISP 167
L VW++AG+ F+ S + Q++LMG E R ++
Sbjct: 103 VSLGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYR----VNG 158
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G K L+ L PG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 159 GPLGK---------GLDVLHPGEK----FDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 205
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G +VQA VT GPI+N EH++DP
Sbjct: 206 GFYVQAIVTGKGPIENWAEHVADP 229
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 113/227 (49%), Gaps = 25/227 (11%)
Query: 38 AKSGTTRRYLATVVRAQQRPTWLPGVD-----------PPPYLDGTLAGDFGFDPLGLGE 86
+S T R AT A + P+ G D PP YL G GD+G+D GL
Sbjct: 32 GESRVTMRKSATKKFASESPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 91
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FA 140
DPE+ + E++H+R+AM G G +F +LL G++ VW++AGA F +
Sbjct: 92 DPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 151
Query: 141 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 200
+L Q +L +A M + EG E +P YPGG +PLG
Sbjct: 152 GNPSLIHAQSILAIWASQVILMGAV-------EGYRIAGGPLGEVTDPIYPGGSF-DPLG 203
Query: 201 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 247
LA D E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H
Sbjct: 204 LADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 115/259 (44%), Gaps = 79/259 (30%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 8 STDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIG 67
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TGI W
Sbjct: 68 TRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGL--TGI----TW 121
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE S+ TL +++L++G+ E +R
Sbjct: 122 QDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR------------------- 162
Query: 180 EAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+VT G
Sbjct: 163 NAELDTEKRLYPGG-TFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221
Query: 240 PIDNILEHLSDPWHKTIIQ 258
P++N + HLSDP H TI+
Sbjct: 222 PLNNWVTHLSDPLHTTILD 240
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 35/205 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG+L GD GFDPLGLG+D L + EL+HAR+AM G+ G+ +LL G+ +
Sbjct: 174 PAHLDGSLCGDAGFDPLGLGKD--DLPRMRELELLHARWAMLGIVGVAVPELLERYGVAD 231
Query: 126 L--PVWYEAGAVE--------------FKFASTRTLFIV---QLLLMGFAETKRY--MDY 164
L PVW++ GA + F A + I+ Q++LMG E RY +D
Sbjct: 232 LGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGPEYARYVGIDS 291
Query: 165 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 224
+ P G + YPGG +P ++ D + K+ EIK+GRLAM+
Sbjct: 292 LEPVGVYLPG------------DKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGRLAMI 339
Query: 225 AMLGIFVQASVTHVGPIDNILEHLS 249
AMLG+ QA VT GPI+N+ S
Sbjct: 340 AMLGVAAQAFVTRAGPIENLASVFS 364
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 103/203 (50%), Gaps = 32/203 (15%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+ P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +L G+
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV 125
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW +AG+ F S ++ Q+LLMG E R
Sbjct: 126 KFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVA------ 179
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G+ ++P YPGG +PLGLA+D E K+KE KNGRLAM +M G
Sbjct: 180 -----GGPLGVV-----VDPLYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFG 228
Query: 229 IFVQASVTHVGPIDNILEHLSDP 251
F+QA VT GP++N+ +HL DP
Sbjct: 229 FFIQAIVTGKGPLENLADHLVDP 251
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 103/204 (50%), Gaps = 36/204 (17%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 60 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVNVN 119
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRY--MDYISP 167
+ PVW++AGA F +++ V Q+LLMG E R +D +
Sbjct: 120 FKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRINGLDGVGN 179
Query: 168 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 227
G+ YPGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 180 GNDL------------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 221
Query: 228 GIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N L+HL +P
Sbjct: 222 GFFVQAIVTGKGPLENWLDHLDNP 245
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 23 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 82
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AGA F +++ V Q++LMG E R
Sbjct: 83 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 135
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 136 --------GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGF 186
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 187 FVQAIVTGKGPLENLLDHLDNP 208
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 100/189 (52%), Gaps = 34/189 (17%)
Query: 59 WLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLL 118
WL G + P YL G AGD+G+D GL DPE+ + Y + EL+HAR+AM G G + +LL
Sbjct: 53 WLSG-ETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELL 111
Query: 119 RVTG--IRELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYM 162
G I E PVW++AGA F+ L +VQ++LMG E R
Sbjct: 112 ANNGTPIAE-PVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQVILMGTVEGYR-- 168
Query: 163 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 222
++ G A EGL+ YPGG +PLGLA D E K+KEIKNGRLA
Sbjct: 169 --VNGGP------------AGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLA 214
Query: 223 MVAMLGIFV 231
M +M G FV
Sbjct: 215 MFSMFGFFV 223
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 101/208 (48%), Gaps = 46/208 (22%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P YLDGTLAGD FDPL L + E R V+ EL+H R+AM V G+ ++L +G E
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 126 L--PVWYEAG-----AVEFKFASTRTLFI-----------VQLLLMGFAETKRYMDYISP 167
L P+W++ G ++ + I Q +LMG E RY+
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYV----- 339
Query: 168 GSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKN 218
+E LEP YPGG +P L+ D E ++ E+K+
Sbjct: 340 --------------GIESLEPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKH 385
Query: 219 GRLAMVAMLGIFVQASVTHVGPIDNILE 246
GRLAM+AMLG+F QA VT GP+ N+LE
Sbjct: 386 GRLAMIAMLGVFAQAFVTREGPVANVLE 413
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 28/188 (14%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEA 132
GDFGFDPLGLGE PE+L Y ++EL+H R+AM V GIL + L + W
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPG 60
Query: 133 GAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLE 187
G + + + T+ +++ L + F E +R M+ P +
Sbjct: 61 GQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKRK---------------- 103
Query: 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILE 246
YPGG +PLG +KD + E K+KEIKNGRLA++A +G VQ S GP++N+
Sbjct: 104 --YPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 160
Query: 247 HLSDPWHK 254
HL+DPWH
Sbjct: 161 HLADPWHN 168
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 110/207 (53%), Gaps = 17/207 (8%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
D P YLDG+LAGD+GFDPL LG+D + Y AE++HAR+AM + GI+ + L + G
Sbjct: 103 DVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHARWAMLAIPGIVIPEALGIPG- 160
Query: 124 RELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAETKRYMDYISP-GSQTKEG 174
VW E G V + R + +Q+ L E R +P G +G
Sbjct: 161 ---GVWTETGKVFLDGEAGRPEILQNPYLFAAIQIGLFAAVEGYRAGKAPAPDGFVPFKG 217
Query: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 234
F G + GL+P PGGPL + +A + K+KEIKNGRLAM+AMLG+FVQ
Sbjct: 218 KFSGSD--FSGLDPINPGGPL-DFFNVAATPDDLAVLKVKEIKNGRLAMIAMLGVFVQGL 274
Query: 235 VTHVGPIDNILEHLSDPWHKTIIQTLA 261
T GP N +H++DP+ + A
Sbjct: 275 TTGEGPAANWGKHVADPFGYNFVTISA 301
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 101/196 (51%), Gaps = 32/196 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G+
Sbjct: 75 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 134
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 135 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 188
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 189 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 237
Query: 229 IFVQASVTHVGPIDNI 244
FVQA VT GPI+N+
Sbjct: 238 FFVQAIVTGKGPIENL 253
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 101/202 (50%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L V
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q+LLMG E R
Sbjct: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 181
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG YPG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 182 --------GLPGVGEGNNL-YPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGF 232
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL DP
Sbjct: 233 FVQAIVTGKGPLENLLDHLDDP 254
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 104/202 (51%), Gaps = 32/202 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--VTGI 123
P YL G GD+G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVD 123
Query: 124 RELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGS 169
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRIN------- 176
Query: 170 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 229
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 177 --------GLPDVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGF 227
Query: 230 FVQASVTHVGPIDNILEHLSDP 251
FVQA VT GP++N+L+HL +P
Sbjct: 228 FVQAIVTGKGPLENLLDHLDNP 249
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 100/196 (51%), Gaps = 32/196 (16%)
Query: 64 DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
+PP YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G+
Sbjct: 75 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 134
Query: 124 R-ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPG 168
+ VW++AGA F S ++ Q++LMG E R
Sbjct: 135 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------ 188
Query: 169 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 228
G G E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G
Sbjct: 189 -----GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 237
Query: 229 IFVQASVTHVGPIDNI 244
FVQA VT GPI+N+
Sbjct: 238 FFVQAIVTGKGPIENL 253
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 106/205 (51%), Gaps = 32/205 (15%)
Query: 63 VDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR--V 120
V P YL G G++G+D GL DPE+ E++H R+AM G G + ++L+ V
Sbjct: 17 VQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 76
Query: 121 TGIRELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYIS 166
+ PVW++AG+ F +++ V Q++LMG E R
Sbjct: 77 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLRIN---- 132
Query: 167 PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAM 226
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M
Sbjct: 133 -----------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 180
Query: 227 LGIFVQASVTHVGPIDNILEHLSDP 251
G FVQA VT GP++N+L+HL +P
Sbjct: 181 FGFFVQAIVTGKGPLENLLDHLDNP 205
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 106/205 (51%), Gaps = 32/205 (15%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL +PE+ + E++HAR+AM G G + +LL G++
Sbjct: 69 PSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLERNGVKI 128
Query: 125 ELPVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQ 170
VW++AG+ F K + + V Q++LMG E R IS G
Sbjct: 129 GEAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQVILMGAIEGYR----ISGGPL 184
Query: 171 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 230
E +P YPGG +PL LA D K+KEIKNGRLAM AMLG +
Sbjct: 185 G------------EPTDPLYPGGNF-DPLHLADDPEEFAILKVKEIKNGRLAMFAMLGFY 231
Query: 231 VQASVTHVGPIDNILEHLSDPWHKT 255
VQA VT GP++N+ +HL+DP+
Sbjct: 232 VQAIVTGKGPLENLYDHLADPFKNN 256
>gi|192764595|gb|ACF05841.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 45 RYLATVVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAE 98
R L V AQ + +W+P V P +LDG+L GD+GFDPLGLG+DP L+WY +AE
Sbjct: 8 RKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAE 67
Query: 99 LVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVE-FKFASTRTLFIVQLLLMGFAE 157
L+H R+AMA V I +GI + GA+ F F S L QL+LMG+ E
Sbjct: 68 LIHGRWAMAAVVSIFVGQAW--SGIPWFEACADPGAIAPFSFGS---LLGTQLILMGWVE 122
Query: 158 TKRYMDYISPGSQTKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLA 202
+KR++D+ +P SQ+ E S A + GYPGG +PLG A
Sbjct: 123 SKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFA 171
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,381,287,250
Number of Sequences: 23463169
Number of extensions: 187345277
Number of successful extensions: 409419
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 403471
Number of HSP's gapped (non-prelim): 2602
length of query: 265
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 125
effective length of database: 9,074,351,707
effective search space: 1134293963375
effective search space used: 1134293963375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)