BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024588
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 140/247 (56%), Gaps = 23/247 (9%)
Query: 29 IGITSAFLPAKSGTTRRYLA----------TVVRAQQRPTWLPGVDPPPYLDGTLAGDFG 78
G+ S FL SG R +A + ++ WLPG+ P YL G+L GD G
Sbjct: 16 CGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNG 75
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK 138
FDPLGL EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+
Sbjct: 76 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY- 134
Query: 139 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF--FGLEAAXXXXXXXXXXXXXX 196
FAS+ TLF+++ +L + E +R+ D +PGS ++ F + L A
Sbjct: 135 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNF 194
Query: 197 XXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 256
AK+ KEI NGRL M+A LG +Q +VT GP DN+L+H+SDPWH TI
Sbjct: 195 APTLEAKE---------KEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 244
Query: 257 IQTLANS 263
+QTL +
Sbjct: 245 VQTLGGN 251
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 137/244 (56%), Gaps = 14/244 (5%)
Query: 25 NKSSIGITSAFLPAK--------SGTTRRYLATV--VRAQQRPTWLPGVDPPPYLDGTLA 74
N S G + AFL K S + R +TV V RP W PG PPP+LDG+L
Sbjct: 23 NGSPSGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLP 82
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134
GDFGFDPLGLG DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG
Sbjct: 83 GDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142
Query: 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXX 194
E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F +
Sbjct: 143 QEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWF 201
Query: 195 XXXXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL-EHLSDPWH 253
A + +E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H
Sbjct: 202 DPLGWGSASP-QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-H 259
Query: 254 KTII 257
TI
Sbjct: 260 ATIF 263
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 112/188 (59%), Gaps = 2/188 (1%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE 125
P +LDG+L GDFGFDPLGL DPESLRW VQAELVH+R+AM G AGI + L GI
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 126 LPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXX 185
P WY AG E+ F T TLFIV+L+ +G+AE +R+ D ++PG + F +
Sbjct: 61 TPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTD 119
Query: 186 XXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL 245
A + +E + KEIKNGRLAM+A++G + Q T GPIDN+
Sbjct: 120 VGYPGGLWFDPLGWGSASP-QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 178
Query: 246 EHLSDPWH 253
HL+DP H
Sbjct: 179 AHLADPGH 186
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 137/269 (50%), Gaps = 25/269 (9%)
Query: 14 SSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT------VVRAQQRPTWLPGVDPPP 67
SSSS + + S+G S P +L V + RP W
Sbjct: 8 SSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLS 67
Query: 68 YLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVT 121
YLDG+L GD+GFDPLGL DPE +W E+++ R+AM G G + ++L
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 122 GI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
G+ LP W+ G A + + A + TLF+ ++ LMGFAE +R+ D+ PGS K
Sbjct: 127 GLIPQETALP-WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 173 EGSFFGLEAAXXXXXXXXXXXXXXXXXXX-AKDIRNAREWKLKEIKNGRLAMVAMLGIFV 231
+ F GLE KD ++ ++ KLKE+KNGRLAM+A+LG FV
Sbjct: 186 Q-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV 244
Query: 232 QASVTHVGPIDNILEHLSDPWHKTIIQTL 260
QA VT VGP N+L+HL+DP H I+ +L
Sbjct: 245 QALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 12/175 (6%)
Query: 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI 147
PE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+ TLF+
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFV 59
Query: 148 VQLLLMGFAETKRYMDYISPGSQTKEGSF--FGLEAAXXXXXXXXXXXXXXXXXXXAKDI 205
++ +L + E +R+ D +PGS ++ F + L A AK+
Sbjct: 60 IEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKE- 118
Query: 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260
KEI NGRLAM+A LG +Q +VT GP DN+L+H+SDPWH TI+QTL
Sbjct: 119 --------KEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 105/177 (59%), Gaps = 13/177 (7%)
Query: 84 LGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTR 143
L EDPE+LRW+VQAELV+ R+AM GVAG+L ++ GI +P WY AG E+ FAS+
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSS 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF--FGLEAAXXXXXXXXXXXXXXXXXXX 201
TLF+++ +L + E +R+ D +PGS ++ F + L A
Sbjct: 60 TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE 119
Query: 202 AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 258
AK+ KEI NGRL M+A LG +Q +VT GP DN+L+H+SDPWH TI+Q
Sbjct: 120 AKE---------KEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 166
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Query: 87 DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLF 146
DPESLRW VQAELVH+R+AM G AGI + L GI P WY AG E+ F T TLF
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLF 60
Query: 147 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIR 206
IV+L+ +G+AE +R+ D ++PG + F + A +
Sbjct: 61 IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASP-Q 119
Query: 207 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257
+E + KEIKNGRLAM+A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 120 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 170
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 106/216 (49%), Gaps = 28/216 (12%)
Query: 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAG 108
V R + W+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM
Sbjct: 38 NVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLA 97
Query: 109 VAGILFTDLLRVTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRY 161
V GIL + L + W G + + + T+ ++ L + F E +R
Sbjct: 98 VPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157
Query: 162 MDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRL 221
M+ + G+F L +KD + E K+KEIKNGRL
Sbjct: 158 MEKDPEKKKYPGGAFDPL--------------------GYSKDPKKLEELKVKEIKNGRL 197
Query: 222 AMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 256
A++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 198 ALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 102/205 (49%), Gaps = 28/205 (13%)
Query: 60 LPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLR 119
+PG P YLDG+ GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 120 VTGIRELPVW--YEAGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 172
+ W G + + + T+ ++ L + F E +R M+ +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYP 120
Query: 173 EGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232
G+F L +KD + E K+KEIKNGRLA++A +G VQ
Sbjct: 121 GGAFDPL--------------------GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 160
Query: 233 ASV-THVGPIDNILEHLSDPWHKTI 256
S GP++N+ HL+DPWH I
Sbjct: 161 QSAYPGTGPLENLATHLADPWHNNI 185
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 93 WYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTR 143
W E+++ RFAM G AG + ++L G+ LP W++ G + +A
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNY 59
Query: 144 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXX-XXXA 202
TLF++++ LMGFAE +R D+ +PGS K+ F GLE
Sbjct: 60 TLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFG 118
Query: 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 249
KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+
Sbjct: 119 KDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
F+PLG G+D +SL+ E+ + R AM + G L VTG+
Sbjct: 112 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL--VTGV 154
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 28/187 (14%)
Query: 75 GDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW--YEA 132
GDFGFDPLGLGE P +L Y ++EL+H R+AM V GIL + L + W
Sbjct: 4 GDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 63
Query: 133 GAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXX 187
G + + + T+ ++ L + F E +R M+ + G+F L
Sbjct: 64 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL-------- 115
Query: 188 XXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILE 246
+KD + E K+KEIKNGRLA++A +G VQ S GP++N+
Sbjct: 116 ------------GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 163
Query: 247 HLSDPWH 253
HL+DPWH
Sbjct: 164 HLADPWH 170
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 99/209 (47%), Gaps = 48/209 (22%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H R+AM G G +F +LL G++
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 92
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKR--------YM 162
VW++AG+ F S ++ Q++LMG E R +
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVV 152
Query: 163 DYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLA 222
D + PG GSF L A D E K+KEIKNGRLA
Sbjct: 153 DPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKEIKNGRLA 187
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDP 251
M +M G FVQA VT GP++N+ +HL+DP
Sbjct: 188 MFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 100/209 (47%), Gaps = 48/209 (22%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKR--------YM 162
VW++AG+ F S ++ Q++LMG E R +
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVV 152
Query: 163 DYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLA 222
D + PG GSF L A D E K+KE+KNGRLA
Sbjct: 153 DPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLA 187
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDP 251
M +M G FVQA VT GP++N+ +HL+DP
Sbjct: 188 MFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 100/209 (47%), Gaps = 48/209 (22%)
Query: 66 PPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR- 124
P YL G GD+G+D GL DPE+ + E++H+R+AM G G +F +LL G++
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 125 ELPVWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKR--------YM 162
VW++AG+ F S ++ Q++LMG E R +
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVV 152
Query: 163 DYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLA 222
D + PG GSF L A D E K+KE+KNGRLA
Sbjct: 153 DPLYPG-----GSFDPL--------------------GLADDPEAFAELKVKELKNGRLA 187
Query: 223 MVAMLGIFVQASVTHVGPIDNILEHLSDP 251
M +M G FVQA VT GP++N+ +HL+DP
Sbjct: 188 MFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 108/258 (41%), Gaps = 79/258 (30%)
Query: 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRW------------------- 93
+ RP W PG P YLDG+L GD+GFDP GLG+ E L++
Sbjct: 8 STDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIG 67
Query: 94 ------------------------YVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVW 129
+ + EL+H R+AM G L + L TGI W
Sbjct: 68 TRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGL--TGI----TW 121
Query: 130 YEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGL 179
+AG VE S+ TL +++L++G+ E +R + + G+F L
Sbjct: 122 QDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPL 181
Query: 180 EAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239
A D +L EIK+ RLAMV LG VQA+VT G
Sbjct: 182 --------------------GLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221
Query: 240 PIDNILEHLSDPWHKTII 257
P++N + HLSDP H TI+
Sbjct: 222 PLNNWVTHLSDPLHTTIL 239
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 80 DPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI---RELPVWYEAGAVE 136
DP G G E RW E+++ RFAM G G + + L G+ W++ G +
Sbjct: 2 DPEGTGGFIEP-RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 60
Query: 137 -----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXX 191
+A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE
Sbjct: 61 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGFGGSGNPAY 119
Query: 192 XXXXXXX-XXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 243
KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N
Sbjct: 120 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 79 FDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI 123
F+PLG G+D +SL+ E+ + R AM + G L VTG+
Sbjct: 125 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGL--VTGV 167
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLR--------------WYVQAELVHARFAMAGVAGILF 114
L G G GFDP +DPE+L WY+ A+ A ++ GV +
Sbjct: 399 LRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYI-ADAFRAGLSVDGVFNLTN 457
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
D + I EL V E E F+ QL GFA+ +
Sbjct: 458 IDRWFLVQIEEL-VRLEEKVAEVGITGLNADFLRQLKRKGFADAR 501
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLR--------------WYVQAELVHARFAMAGVAGILF 114
L G G GFDP +DPE+L WY+ A+ A ++ GV +
Sbjct: 399 LRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYI-ADAFRAGLSVDGVFNLTN 457
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
D + I EL V E E F+ QL GFA+ +
Sbjct: 458 IDRWFLVQIEEL-VRLEEKVAEVGITGLNADFLRQLKRKGFADAR 501
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 69 LDGTLAGDFGFDPLGLGEDPESLR--------------WYVQAELVHARFAMAGVAGILF 114
L G G GFDP +DPE+L WY+ A+ A ++ GV +
Sbjct: 399 LRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYI-ADAFRAGLSVDGVFNLTN 457
Query: 115 TDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETK 159
D + I EL V E E F+ QL GFA+ +
Sbjct: 458 IDRWFLVQIEEL-VRLEEKVAEVGITGLNADFLRQLKRKGFADAR 501
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,092,096
Number of Sequences: 62578
Number of extensions: 263010
Number of successful extensions: 495
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 23
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)