Query 024588
Match_columns 265
No_of_seqs 214 out of 1206
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00147 light-harvesting comp 100.0 1E-69 2.2E-74 492.6 18.2 249 1-263 4-252 (252)
2 PLN00098 light-harvesting comp 100.0 5.1E-67 1.1E-71 478.1 19.0 209 51-262 57-266 (267)
3 PLN00101 Photosystem I light-h 100.0 7.2E-67 1.6E-71 473.3 17.9 201 53-261 50-250 (250)
4 PLN00097 photosystem I light h 100.0 2.7E-65 5.9E-70 461.4 17.4 206 49-257 37-243 (244)
5 PLN00048 photosystem I light h 100.0 4.7E-62 1E-66 444.9 15.7 208 53-262 39-261 (262)
6 PLN00187 photosystem II light- 100.0 1.6E-60 3.4E-65 438.5 17.0 186 51-261 47-285 (286)
7 PLN00100 light-harvesting comp 100.0 2.1E-60 4.5E-65 429.6 15.7 188 43-260 22-209 (246)
8 PLN00025 photosystem II light 100.0 1.2E-58 2.6E-63 422.0 15.9 192 52-260 47-255 (262)
9 PLN00099 light-harvesting comp 100.0 4.2E-58 9.1E-63 415.1 16.3 185 53-263 41-239 (243)
10 PLN00171 photosystem light-ha 100.0 1E-57 2.2E-62 424.6 16.3 201 51-261 103-323 (324)
11 PLN00170 photosystem II light- 100.0 5.3E-56 1.2E-60 402.9 15.1 220 15-245 13-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 3.1E-43 6.7E-48 312.5 13.8 165 54-241 35-207 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 2.9E-42 6.3E-47 291.2 13.0 151 65-234 1-156 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 1.6E-35 3.5E-40 262.0 12.0 139 79-241 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 1.4E-16 3.1E-21 146.4 5.6 71 187-257 76-153 (267)
16 PLN00101 Photosystem I light-h 99.6 4.6E-16 1E-20 141.9 5.8 55 187-241 67-121 (250)
17 PLN00170 photosystem II light- 99.6 1.3E-15 2.9E-20 139.1 6.9 74 157-239 50-123 (255)
18 PLN00147 light-harvesting comp 99.5 3.4E-15 7.4E-20 136.4 4.9 58 67-124 173-230 (252)
19 PLN00171 photosystem light-ha 99.5 1.1E-14 2.3E-19 136.8 5.3 54 187-240 124-177 (324)
20 PLN00097 photosystem I light h 99.5 1.5E-14 3.3E-19 131.5 5.6 54 187-240 58-111 (244)
21 PLN00048 photosystem I light h 99.5 1.1E-14 2.3E-19 133.9 4.5 55 70-124 186-240 (262)
22 PLN00025 photosystem II light 99.5 2.2E-14 4.7E-19 131.8 5.5 52 187-238 67-118 (262)
23 PLN00089 fucoxanthin-chlorophy 99.5 2.1E-14 4.5E-19 128.2 5.0 54 71-124 153-207 (209)
24 PLN00100 light-harvesting comp 99.5 3E-14 6.4E-19 129.7 5.3 51 186-236 48-98 (246)
25 PLN00099 light-harvesting comp 99.4 7.2E-14 1.6E-18 127.2 4.8 50 187-236 58-107 (243)
26 PLN00187 photosystem II light- 99.4 6.4E-14 1.4E-18 130.0 4.3 55 70-124 211-265 (286)
27 PF00504 Chloroa_b-bind: Chlor 99.4 7.8E-13 1.7E-17 111.8 5.9 49 189-238 8-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 2.8E-11 6.1E-16 107.6 4.4 50 71-120 142-194 (202)
29 PHA02337 putative high light i 98.0 5.1E-06 1.1E-10 54.6 3.0 27 213-239 4-30 (35)
30 PLN00084 photosystem II subuni 97.9 7.3E-06 1.6E-10 71.5 3.3 42 206-247 130-172 (214)
31 PLN00014 light-harvesting-like 97.5 9E-05 1.9E-09 67.4 3.3 37 211-247 159-195 (250)
32 PHA02337 putative high light i 97.5 7.5E-05 1.6E-09 49.1 2.0 29 95-123 3-31 (35)
33 PLN00014 light-harvesting-like 95.3 0.0081 1.7E-07 54.9 1.4 30 95-124 160-189 (250)
34 PLN00084 photosystem II subuni 95.0 0.015 3.3E-07 51.1 2.4 36 89-124 130-166 (214)
35 PLN02449 ferrochelatase 47.6 13 0.00028 37.7 2.3 22 221-242 463-484 (485)
36 COG3924 Predicted membrane pro 36.4 21 0.00045 27.5 1.3 34 99-132 9-48 (80)
37 PHA00649 hypothetical protein 23.9 87 0.0019 24.0 2.8 31 86-117 31-68 (83)
38 cd07311 terB_like_1 tellurium 21.1 1E+02 0.0022 26.3 3.0 14 211-224 135-148 (150)
No 1
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1e-69 Score=492.64 Aligned_cols=249 Identities=81% Similarity=1.309 Sum_probs=215.4
Q ss_pred CceeccccceeccCCCCcccccccCCCcccccccCCCCCcccCccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 024588 1 MAVAVGRGFLLQPSSSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFD 80 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfD 80 (265)
|++.+.+++..+++.+++..+.. +++.+ ..+.|. +..++++|++|+|+.++|+||||++|||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~--~~~~~~~R~~wlP~~~~P~~Ldg~~pGD~GFD 69 (252)
T PLN00147 4 MAGGTTGGFLHQPRDSSSHCTRS--ISSVA----------ASSGGI--NPVVAQERPTWLPGLDPPPHLDGTLAGDFGFD 69 (252)
T ss_pred eeeccCCceeeecccccchhhhh--hhhhh----------hccccC--cccCCCCccccCCCCCCCCcCCCCCCCccCCC
Confidence 55666777777777655555443 22221 012332 22346899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhccccccccccchhhHHHHHHHHhHhhhhhh
Q 024588 81 PLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKR 160 (265)
Q Consensus 81 Plgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~aG~~~~~f~~~~~l~~~ql~~~G~~E~~r 160 (265)
|+||++|+++++|||++|||||||||||++|+++||+++..|....|.|+++|...+++.+.++++++|+++||++|..|
T Consensus 70 Plgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R 149 (252)
T PLN00147 70 PLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKR 149 (252)
T ss_pred cccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888877788999988766666677888899999999999999
Q ss_pred hccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 024588 161 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240 (265)
Q Consensus 161 ~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gP 240 (265)
|.++.+||++..++.|+|.+...++.+++||||++||||||.+|+++++++|+||||||||||+|++||++|+++||++|
T Consensus 150 ~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp 229 (252)
T PLN00147 150 YMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGP 229 (252)
T ss_pred hccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCh
Confidence 99999999988888887776666667788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCccccchhhccccC
Q 024588 241 IDNILEHLSDPWHKTIIQTLANS 263 (265)
Q Consensus 241 l~nL~~hl~dP~~~ni~~~~~~~ 263 (265)
++||.+||+||+|+||+++++++
T Consensus 230 ~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 230 IDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred HHHHHHHhcCcccchhhhhhcCC
Confidence 99999999999999999999875
No 2
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=5.1e-67 Score=478.12 Aligned_cols=209 Identities=46% Similarity=0.847 Sum_probs=186.4
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchh
Q 024588 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130 (265)
Q Consensus 51 ~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~ 130 (265)
++.++|++|+|+.+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..|++..+.||
T Consensus 57 ~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~ 136 (267)
T PLN00098 57 PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWY 136 (267)
T ss_pred cCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 55689999999999999999999999999999999999999999999999999999999999999999888877667899
Q ss_pred ccccccccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCch-hHHHHH
Q 024588 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAR 209 (265)
Q Consensus 131 ~aG~~~~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~-d~e~~~ 209 (265)
++|...| +.+..+++++|+++||++|.+||.++.++|++..++.|.+ ....+.+.+||||++||||||.+ |+++++
T Consensus 137 ~Ag~~~~-~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~--~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~ 213 (267)
T PLN00098 137 DAGAREY-FADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPN--KTNPKPDVGYPGGLWFDPMMWGRGSPEPVM 213 (267)
T ss_pred cccchhh-ccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccc--cccCCCCCCCCCCccCCcccCCCCCHHHHH
Confidence 9987654 5556678889999999999999999888887766655422 11223356899999999999976 999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhcccc
Q 024588 210 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262 (265)
Q Consensus 210 ~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~~ 262 (265)
++|+||||||||||||++||++|+.+||++|++||.+||+||+|+||++++++
T Consensus 214 ~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 214 VLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999999999999999999999999999999999999999999875
No 3
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=7.2e-67 Score=473.31 Aligned_cols=201 Identities=52% Similarity=0.966 Sum_probs=181.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhcc
Q 024588 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132 (265)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~a 132 (265)
.++|+.|+|+.+.|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||+++..|+...|.|+++
T Consensus 50 ~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~a 129 (250)
T PLN00101 50 EAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDA 129 (250)
T ss_pred cccccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999888878899999
Q ss_pred ccccccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHH
Q 024588 133 GAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 212 (265)
Q Consensus 133 G~~~~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k 212 (265)
|...| +....+++++|+++||++|++||.++.+||+++.++.|.+ ......|.+||||. ||||||+++ +++|
T Consensus 130 g~~~~-~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~--~~~~~gd~~YPGG~-FDPLgl~~~----~~~k 201 (250)
T PLN00101 130 GKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ--YSLPPNEVGYPGGI-FNPLNFAPT----EEAK 201 (250)
T ss_pred cchhh-cccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccc--cccCCccccCCCCc-cCccCCCcc----HHHH
Confidence 87655 5666788889999999999999999999998877766632 22334567899997 999999865 4889
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhccc
Q 024588 213 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261 (265)
Q Consensus 213 ~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~ 261 (265)
+||||||||||+|++||++|+.+||++|++||.+||+||+|+||+++++
T Consensus 202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred HHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999874
No 4
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=2.7e-65 Score=461.39 Aligned_cols=206 Identities=47% Similarity=0.845 Sum_probs=183.4
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcc
Q 024588 49 TVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPV 128 (265)
Q Consensus 49 ~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~ 128 (265)
+++++++|++|+|+.+.|+||||++||||||||+||++|+++++|||++||+||||||||++|+++||+++..|+...|.
T Consensus 37 ~~~~~~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~ 116 (244)
T PLN00097 37 AVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPN 116 (244)
T ss_pred ecccCCCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCc
Confidence 33455799999999999999999999999999999999999999999999999999999999999999999888766788
Q ss_pred hhcccccc-ccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHH
Q 024588 129 WYEAGAVE-FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 207 (265)
Q Consensus 129 w~~aG~~~-~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~ 207 (265)
||++|... | +....+++++|+++||++|.+||.++++||++..++.| +.+......|.+|||+. ||||||.+|+++
T Consensus 117 W~~Ag~~~~~-~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~-~~~~~~~~~d~gYPgg~-FDPlgl~~d~~~ 193 (244)
T PLN00097 117 WIDAAKWDGY-WAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLF-GANKGDTNTDVGYPKGL-FDKFGWAKDEKK 193 (244)
T ss_pred cccCCcchhc-cccchhHHHHHHHHHHHHHHHHhhcccCCCcccccccc-ccccCCcccccCCCCCC-CCccccCCCHHH
Confidence 99998654 3 44556788889999999999999999999987766544 22222233467899997 999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchh
Q 024588 208 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 257 (265)
Q Consensus 208 ~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~ 257 (265)
++++|+||||||||||+|++||++|+.+||++|++||.+||+||+|+||+
T Consensus 194 ~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 194 AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999999999999999999999999997
No 5
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=4.7e-62 Score=444.87 Aligned_cols=208 Identities=48% Similarity=0.915 Sum_probs=178.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHH------HHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCC
Q 024588 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPE------SLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIREL 126 (265)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~------~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~ 126 (265)
+++|++|+|+.+.|+||||++|||||||||||+ +++ +++|+|++||+||||||||++|+++||++++.|++..
T Consensus 39 ~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 39 GADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred CCCCceecCCCCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 457999999999999999999999999999997 333 6799999999999999999999999999987776531
Q ss_pred ---cchhcccccc----cc-ccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcC-CCCCCCCCCCCC
Q 024588 127 ---PVWYEAGAVE----FK-FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG-LEPGYPGGPLLN 197 (265)
Q Consensus 127 ---P~w~~aG~~~----~~-f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g-~~~~yPGd~gFD 197 (265)
..|+++|... ++ +.+..+++++|+++||++|.+|++++.+||+++.+ .|.+.+..+.+ .++.||||++||
T Consensus 118 ~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~-~~~~~~~~~~~~~d~~yPG~~~fD 196 (262)
T PLN00048 118 ETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ-YFLGLEKGLGGSGNPAYPGGPFFN 196 (262)
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCccccc-ccccchhccccccccccccccccC
Confidence 2499887421 11 34445678888999999999999999999987653 44455444444 256799999999
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhcccc
Q 024588 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262 (265)
Q Consensus 198 PLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~~ 262 (265)
||||.+|+++++++|+||||||||||+|++||++|+++||++|++||.+||+||+|+||++|+..
T Consensus 197 PlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 197 PLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 6
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.6e-60 Score=438.48 Aligned_cols=186 Identities=44% Similarity=0.810 Sum_probs=163.0
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHH----------------------------------------
Q 024588 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES---------------------------------------- 90 (265)
Q Consensus 51 ~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~---------------------------------------- 90 (265)
.+.++|++|+|+.++|+||||++|||||||||||+++||.
T Consensus 47 ~~~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 126 (286)
T PLN00187 47 KVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSE 126 (286)
T ss_pred CCCCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchh
Confidence 3467899999999999999999999999999999999886
Q ss_pred ---HHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhccccccc----c-cc-----chhhHHHHHHHHhHhhh
Q 024588 91 ---LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF----K-FA-----STRTLFIVQLLLMGFAE 157 (265)
Q Consensus 91 ---l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~aG~~~~----~-f~-----~~~~l~~~ql~~~G~~E 157 (265)
++||||+||+||||||||++|+++||+++ |. .|+++|...+ . +. .+.+++++|+++||++|
T Consensus 127 ~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~----~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E 200 (286)
T PLN00187 127 VFGLQRFRECELIHGRWAMLATLGALSVEALT--GV----TWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIE 200 (286)
T ss_pred hhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC----cccccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999985 32 3888775321 0 11 23577899999999999
Q ss_pred hhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 024588 158 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237 (265)
Q Consensus 158 ~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG 237 (265)
.+|+.+. . ..++.||||++||||||.+|+++++++|++|||||||||+|++||++|+.+||
T Consensus 201 ~~R~~~~---~----------------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg 261 (286)
T PLN00187 201 FQRNAEL---D----------------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 261 (286)
T ss_pred hhhccCC---C----------------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 9986542 0 12456999988999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhcCccccchhhccc
Q 024588 238 VGPIDNILEHLSDPWHKTIIQTLA 261 (265)
Q Consensus 238 ~gPl~nL~~hl~dP~~~ni~~~~~ 261 (265)
++|++||.+||+||+|+||+++|.
T Consensus 262 ~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 262 KGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CChHHHHHHHhcCcccccHHHhcc
Confidence 999999999999999999999875
No 7
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=2.1e-60 Score=429.58 Aligned_cols=188 Identities=44% Similarity=0.776 Sum_probs=166.1
Q ss_pred CccchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccC
Q 024588 43 TRRYLATVVRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTG 122 (265)
Q Consensus 43 ~~r~~~~~~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G 122 (265)
.+|+..+++++++|++|+|+.++|+||||++|||||||||||++++++++|+|++|||||||||||++|+++||+++
T Consensus 22 ~~~~~~~~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~--- 98 (246)
T PLN00100 22 TTRRPRVRVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG--- 98 (246)
T ss_pred cccccccccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc---
Confidence 45555666778899999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCcchhccccccccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCc
Q 024588 123 IRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA 202 (265)
Q Consensus 123 ~~~~P~w~~aG~~~~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~ 202 (265)
+|.|+++|...+. .+.++++++|+++||++|.+|+.++..++ +.++||+++||||||.
T Consensus 99 ---~P~w~~ag~~~~~-~~~~~l~~iqill~g~~E~~r~~~~~~~g------------------~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 99 ---LPKFWEAGAEKYG-LDLQTLVLIQVVVMAVLEAARYRGFMKTG------------------ESGVLSFFPFDPTGMD 156 (246)
T ss_pred ---ccchhhcchhhhc-cchhHHHHHHHHHHHHHhhhccccccccc------------------ccCCCCCCCCCccccc
Confidence 4779988876542 34567889999999999999988764322 2346889999999996
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhcc
Q 024588 203 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260 (265)
Q Consensus 203 ~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~ 260 (265)
+ +++|+|||||||||||||+||++|+.+||++|++||.+|++||+|+||+++.
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 3 5799999999999999999999999999999999999999999999999863
No 8
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.2e-58 Score=422.05 Aligned_cols=192 Identities=43% Similarity=0.755 Sum_probs=165.4
Q ss_pred ccCCCCCCC-CCC-CCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC-CCcc
Q 024588 52 RAQQRPTWL-PGV-DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELPV 128 (265)
Q Consensus 52 ~~~~r~~~l-P~~-~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~-~~P~ 128 (265)
..++|++|| |+. +.|.||||++||||||||+||++|+++++|||++|||||||||||++|++++|+++..|+. ..+.
T Consensus 47 ~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~ 126 (262)
T PLN00025 47 YGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAV 126 (262)
T ss_pred cCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCccc
Confidence 467999999 776 6889999999999999999999999999999999999999999999999999999876663 3467
Q ss_pred hhcccccccc------cc--------chhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCC
Q 024588 129 WYEAGAVEFK------FA--------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 194 (265)
Q Consensus 129 w~~aG~~~~~------f~--------~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~ 194 (265)
||++|...+. +. ++.+++++|+++||++|.+|+.+. +.. .+.++.||||+
T Consensus 127 W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~~~--------------~~~d~~yPG~~ 190 (262)
T PLN00025 127 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--PLG--------------EGLDPLYPGGS 190 (262)
T ss_pred ccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--ccc--------------ccccCcCCccc
Confidence 9988753211 11 234567788999999999987652 110 12246799999
Q ss_pred CCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhcc
Q 024588 195 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 260 (265)
Q Consensus 195 gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~ 260 (265)
||||||.+|+++++++|+||||||||||+|++||++|+++||++|++||.+||+||+|+||+++.
T Consensus 191 -FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 191 -FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYA 255 (262)
T ss_pred -CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999865
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=4.2e-58 Score=415.07 Aligned_cols=185 Identities=42% Similarity=0.840 Sum_probs=158.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhcc
Q 024588 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEA 132 (265)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~a 132 (265)
.++|..|+|+.+.|+||||++|||+||||+||++++++++|||++|||||||||||++|+++||+++. +.|+++
T Consensus 41 ~~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~------~~w~~a 114 (243)
T PLN00099 41 VTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL------GNWVKA 114 (243)
T ss_pred ccccccccCCCCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc------CCcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999763 335554
Q ss_pred cc--------ccc-----cccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCcc
Q 024588 133 GA--------VEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 199 (265)
Q Consensus 133 G~--------~~~-----~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPL 199 (265)
+. ..+ .+..+++++++|+++||++|..|+... .+ .+..|||| +||||
T Consensus 115 ~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~~------------------~~~~yPGd-~FDPl 174 (243)
T PLN00099 115 QEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DP------------------EKKKYPGG-AFDPL 174 (243)
T ss_pred cchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-CC------------------CCCcCCCC-cCCcc
Confidence 32 111 122346778899999999998875321 00 12469999 69999
Q ss_pred CCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhhcCccccchhhccccC
Q 024588 200 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA-SVTHVGPIDNILEHLSDPWHKTIIQTLANS 263 (265)
Q Consensus 200 gl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe-~vtG~gPl~nL~~hl~dP~~~ni~~~~~~~ 263 (265)
||.+|+++++++|+|||||||||||||+||++|+ .+||++|++||.+||+||+|+||++.+...
T Consensus 175 Gl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~~ 239 (243)
T PLN00099 175 GYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239 (243)
T ss_pred cccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeeccc
Confidence 9999999999999999999999999999999999 579999999999999999999999987654
No 10
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1e-57 Score=424.65 Aligned_cols=201 Identities=41% Similarity=0.733 Sum_probs=169.0
Q ss_pred hccCCCCCCCCCC--CCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCC--C
Q 024588 51 VRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRE--L 126 (265)
Q Consensus 51 ~~~~~r~~~lP~~--~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~--~ 126 (265)
...++|++|+|.. +.|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|... .
T Consensus 103 ~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~ 182 (324)
T PLN00171 103 WYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAE 182 (324)
T ss_pred ccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCc
Confidence 3467899999877 69999999999999999999999999999999999999999999999999999988776542 3
Q ss_pred cchhccccccc-----cc-c----------chhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCC
Q 024588 127 PVWYEAGAVEF-----KF-A----------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGY 190 (265)
Q Consensus 127 P~w~~aG~~~~-----~f-~----------~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~y 190 (265)
|.||++|...+ ++ . .+..++++|+++|+.+|++|+.++.+++.. | ...+ .|.+|
T Consensus 183 p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~-------g--~~~P-GD~gY 252 (324)
T PLN00171 183 PVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPL-------G--IYLP-GDINY 252 (324)
T ss_pred cchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCc-------c--ccCC-CcccC
Confidence 67999885322 11 1 123466788888888899998875432211 0 0112 25679
Q ss_pred CCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhccc
Q 024588 191 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 261 (265)
Q Consensus 191 PGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~ 261 (265)
||+.+||||||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+||+||+|+||++++.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=5.3e-56 Score=402.92 Aligned_cols=220 Identities=43% Similarity=0.693 Sum_probs=176.9
Q ss_pred CCCcccccccCCCcccccccCCCCCcccCccchhh-hhccCCCCCCCCCCC------CCCCCCCCCCCCCCcCCCCCCCC
Q 024588 15 SSSSFICNDVNKSSIGITSAFLPAKSGTTRRYLAT-VVRAQQRPTWLPGVD------PPPYLDGTLAGDFGFDPLGLGED 87 (265)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~r~~~lP~~~------~p~~l~G~~pGd~GfDPlgl~~~ 87 (265)
-.|+|+.++ +|+.+...+.-+.+ +++|++.| +++++.|+.|+|+.. .|.||||++||||||||+||++|
T Consensus 13 ~~ssf~~g~--~~~~~~~~~~~~~~--~~~~~~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d 88 (255)
T PLN00170 13 LGSSFLTGG--KRSLALLVGTGAAK--VGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKD 88 (255)
T ss_pred ccCcccccc--hhhhcccccccccc--cccceeEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCC
Confidence 388999887 66654333333333 34444434 356688999999985 69999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhcccccccccc--chhhHHHHHHHHhHhhhhhhhcccc
Q 024588 88 PESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYI 165 (265)
Q Consensus 88 ~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~aG~~~~~f~--~~~~l~~~ql~~~G~~E~~r~~~~~ 165 (265)
+++++|||++||+||||||||++|++++|+++. . .||++|.....+. ++.+++.+|+++||++|.+||.++.
T Consensus 89 ~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g--~----~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~ 162 (255)
T PLN00170 89 PAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG--I----PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 162 (255)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC--C----ChhhCCccccccCccchHHHHHHHHHHhhhhhheeecccc
Confidence 999999999999999999999999999999863 2 3999987542222 3457888999999999999999999
Q ss_pred CCCCCCCCCccc----chhhhhcCCCCCCCCCCCCCccCCch---------hHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 024588 166 SPGSQTKEGSFF----GLEAALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGRLAMVAMLGIFVQ 232 (265)
Q Consensus 166 ~pg~~~~~~~f~----G~~~~~~g~~~~yPGd~gFDPLgl~~---------d~e~~~~~k~kELkNGRLAMlAi~G~~~Q 232 (265)
+|+++..++.+. ..+......+.+|||+..||||||.+ |+++++++|+||||||||||+|++||++|
T Consensus 163 ~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Q 242 (255)
T PLN00170 163 NPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFE 242 (255)
T ss_pred CCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHhee
Confidence 999877664321 01112223467899998899999985 78999999999999999999999999999
Q ss_pred hhccCCcchhhhh
Q 024588 233 ASVTHVGPIDNIL 245 (265)
Q Consensus 233 e~vtG~gPl~nL~ 245 (265)
+ .||++||+||.
T Consensus 243 a-~~g~~p~~~l~ 254 (255)
T PLN00170 243 A-GQGKTPLGALG 254 (255)
T ss_pred e-ccCCCchhhhc
Confidence 9 79999999984
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=312.52 Aligned_cols=165 Identities=33% Similarity=0.448 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCC-CHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC----CCcc
Q 024588 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGE-DPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR----ELPV 128 (265)
Q Consensus 54 ~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~-~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~----~~P~ 128 (265)
.+++...|++++|+.|||+ .||+||||+||++ ++++++|||++|||||||||||++|+++||+++.+|.. ..|.
T Consensus 35 ~~~~g~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~ 113 (209)
T PLN00089 35 DDCPGAIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPK 113 (209)
T ss_pred hhcccccccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 3445667999999999999 9999999999985 67889999999999999999999999999998887743 1222
Q ss_pred hhccccccccccchhhH-HHHHHH-HhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCc-hhH
Q 024588 129 WYEAGAVEFKFASTRTL-FIVQLL-LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA-KDI 205 (265)
Q Consensus 129 w~~aG~~~~~f~~~~~l-~~~ql~-~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~-~d~ 205 (265)
|+++ +..++.. .++|++ +||++|..... +.... ..+ +.++|||++||||||. +|+
T Consensus 114 ~~~a------~~~~~~~g~~~Qi~~~ig~~E~~~~~----~~~~~----------~~~--~~~~PGd~gfdplgl~~~d~ 171 (209)
T PLN00089 114 TIDA------HDALLKSGAMIQIFAWIGFVDLAVSA----PAAAA----------AAE--FDRTPGDFGFDLLALYPKDA 171 (209)
T ss_pred HHHH------HHhhcccccHHHHHHHHHHHHHHHhh----ccccc----------ccc--CCCCCCCcCccccccCCCCH
Confidence 2221 1122222 357875 79999964221 11100 001 2358999999999995 489
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 024588 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241 (265)
Q Consensus 206 e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 241 (265)
++++++|++||||||||||||+|+++|+.+||++.+
T Consensus 172 ~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 172 AKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999998865
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=2.9e-42 Score=291.22 Aligned_cols=151 Identities=42% Similarity=0.708 Sum_probs=121.3
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCC----CCCcchhcccccccccc
Q 024588 65 PPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFKFA 140 (265)
Q Consensus 65 ~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~----~~~P~w~~aG~~~~~f~ 140 (265)
+|.+|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|+++..+. ...|.|.+++. +
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~----~- 74 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG----I- 74 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS----S-
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh----h-
Confidence 589999999999999999999887 9999999999999999999999999999865322 23455765431 1
Q ss_pred chhhHHHHHH-HHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHhhh
Q 024588 141 STRTLFIVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 219 (265)
Q Consensus 141 ~~~~l~~~ql-~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNG 219 (265)
+++..+++|+ +++|++|..+..+...+.... ..+..||||++|||+|+.+|++.++++|++|||||
T Consensus 75 ~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~-------------~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NG 141 (156)
T PF00504_consen 75 PVPAAGWAQILLFIGALEPWRQQGVPEPGEGG-------------GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNG 141 (156)
T ss_dssp SSHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS-------------SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhHhhhhhcccccCCcccc-------------cccccCccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 2455566665 689999999887653332110 12456899999999999989999999999999999
Q ss_pred hHHHHHHHHHHHHhh
Q 024588 220 RLAMVAMLGIFVQAS 234 (265)
Q Consensus 220 RLAMlAi~G~~~Qe~ 234 (265)
|||||||+|+++||.
T Consensus 142 RlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 142 RLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999983
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=262.03 Aligned_cols=139 Identities=27% Similarity=0.397 Sum_probs=103.3
Q ss_pred cCCCCCC--CCHHHHHHHHHHHHhhccchhhhhhhHhhhhh-hhccCCCCCc-chhccccccc-cccchhhHHHHHH-HH
Q 024588 79 FDPLGLG--EDPESLRWYVQAELVHARFAMAGVAGILFTDL-LRVTGIRELP-VWYEAGAVEF-KFASTRTLFIVQL-LL 152 (265)
Q Consensus 79 fDPlgl~--~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~-~~~~G~~~~P-~w~~aG~~~~-~f~~~~~l~~~ql-~~ 152 (265)
|||+||+ +|+++++|+|++|||||||||||++|+++|++ ++.+|..... ..|..-...+ .+..++..+|+|+ ++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ 126 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAF 126 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHH
Confidence 9999997 47899999999999999999999999999997 5656543210 1121100000 1234566778897 57
Q ss_pred hHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCC-------CCCCCccCCchhHHHHHHHHHHHHhhhhHHHHH
Q 024588 153 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPG-------GPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 225 (265)
Q Consensus 153 ~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPG-------d~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlA 225 (265)
||++|..++.+.. + +..+|| |++|||+ |+++++++|+||||||||||||
T Consensus 127 ig~~E~~~~~~~~--~------------------~~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMia 182 (202)
T PLN00120 127 IGFLELAVMKDIT--G------------------EGEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMG 182 (202)
T ss_pred HHHHHHHhhcccc--c------------------CCCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987654321 0 123566 4455554 7889999999999999999999
Q ss_pred HHHHHHHhhccCCcch
Q 024588 226 MLGIFVQASVTHVGPI 241 (265)
Q Consensus 226 i~G~~~Qe~vtG~gPl 241 (265)
|+||++|+.++|+.|+
T Consensus 183 i~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 183 ILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHHHccCCCcC
Confidence 9999999999999886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.64 E-value=1.4e-16 Score=146.41 Aligned_cols=71 Identities=28% Similarity=0.476 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhh-------hhhhcCccccchh
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNI-------LEHLSDPWHKTII 257 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL-------~~hl~dP~~~ni~ 257 (265)
|..+|||+|||||||.+|+++++++|++||||||+||+|++|+++||++++.++++++ .+++.+|....++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~ 153 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVV 153 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHH
Confidence 3457999999999999999999999999999999999999999999999988776543 2345666544333
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.61 E-value=4.6e-16 Score=141.88 Aligned_cols=55 Identities=35% Similarity=0.586 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 241 (265)
+..+|||++||||||.+|+++++++|++|||||||||||++|+++||++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999999999999999999999999999999999999999998876
No 17
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.60 E-value=1.3e-15 Score=139.11 Aligned_cols=74 Identities=28% Similarity=0.486 Sum_probs=61.6
Q ss_pred hhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 024588 157 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236 (265)
Q Consensus 157 E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vt 236 (265)
.-.+|.+..+|+++...+.+ .+..+|||++||||+|.+|++.++++|.+||+|||+||+|++|+++|++++
T Consensus 50 ~~k~w~p~~~~~~~~~~P~~---------l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~ 120 (255)
T PLN00170 50 PKKSWIPAVKGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120 (255)
T ss_pred CCccccCCCCCCcccCCccc---------ccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc
Confidence 44467776666665555544 245689999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 024588 237 HVG 239 (265)
Q Consensus 237 G~g 239 (265)
|..
T Consensus 121 g~~ 123 (255)
T PLN00170 121 GIP 123 (255)
T ss_pred CCC
Confidence 764
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.55 E-value=3.4e-15 Score=136.39 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 67 PYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 67 ~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
..+++.+|||++|||+||++|+++++++|++|||||||||+|++|+++|+++++.|++
T Consensus 173 ~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 173 EGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred cccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 4566779999999999999999999999999999999999999999999999877764
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.51 E-value=1.1e-14 Score=136.75 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gP 240 (265)
|..+|||+|||||||++|+++++++|++||||||+||||++|+++||++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 445899999999999999999999999999999999999999999999876543
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.51 E-value=1.5e-14 Score=131.51 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 240 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gP 240 (265)
+...|||++||||||++|+++++++|.+||||||+||||++|+++||++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 445799999999999999999999999999999999999999999999987654
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.51 E-value=1.1e-14 Score=133.88 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=51.0
Q ss_pred CCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 70 ~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
|..+|||++|||+||++|+|+++++|.+|||||||||+|++|+++|+++++.|++
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 4469999999999999999999999999999999999999999999999877653
No 22
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.49 E-value=2.2e-14 Score=131.76 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCC
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~ 238 (265)
+..+|||+|||||||++|+++++++|..||||||+||+|++|+++||++++.
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~ 118 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKN 118 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcC
Confidence 3457999999999999999999999999999999999999999999999864
No 23
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.49 E-value=2.1e-14 Score=128.19 Aligned_cols=54 Identities=31% Similarity=0.489 Sum_probs=49.3
Q ss_pred CCCCCCCCcCCCCC-CCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 71 GTLAGDFGFDPLGL-GEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 71 G~~pGd~GfDPlgl-~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
+..|||+||||+|| .+|+++++++|.+||||||+||+|++|+++|+++++.|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999999999 4689999999999999999999999999999999876653
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.48 E-value=3e-14 Score=129.66 Aligned_cols=51 Identities=29% Similarity=0.381 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 024588 186 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236 (265)
Q Consensus 186 ~~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vt 236 (265)
.|..+|||+|||||||++|+++++++|.+||||||+||+|++|+++||+++
T Consensus 48 Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 48 LDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 355689999999999999999999999999999999999999999999974
No 25
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.44 E-value=7.2e-14 Score=127.16 Aligned_cols=50 Identities=30% Similarity=0.428 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vt 236 (265)
|..+|||+|||||+|++++++++++|.+||||||+||+|++|+++||+++
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999975
No 26
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.44 E-value=6.4e-14 Score=129.96 Aligned_cols=55 Identities=35% Similarity=0.422 Sum_probs=51.2
Q ss_pred CCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 70 ~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
+..+|||++|||+||++|+++++++|++|||||||||+|++|+++|+++++.|++
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 4569999999999999999999999999999999999999999999999887764
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.36 E-value=7.8e-13 Score=111.77 Aligned_cols=49 Identities=37% Similarity=0.582 Sum_probs=45.8
Q ss_pred CCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCC
Q 024588 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 238 (265)
Q Consensus 189 ~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~ 238 (265)
.++||++|||+||++++ .+.++|..||||||+||+|++|++++|+.++.
T Consensus 8 ~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 8 SVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 47999999999999877 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.15 E-value=2.8e-11 Score=107.65 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=39.8
Q ss_pred CCCCCCCCcC--CCCCCC-CHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhc
Q 024588 71 GTLAGDFGFD--PLGLGE-DPESLRWYVQAELVHARFAMAGVAGILFTDLLRV 120 (265)
Q Consensus 71 G~~pGd~GfD--Plgl~~-~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~ 120 (265)
+..|||++++ ++|+.. |+++.+++|.+||||||+||+|++|+++||+++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5788854322 333322 7899999999999999999999999999999864
No 29
>PHA02337 putative high light inducible protein
Probab=98.01 E-value=5.1e-06 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.223 Sum_probs=25.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCc
Q 024588 213 LKEIKNGRLAMVAMLGIFVQASVTHVG 239 (265)
Q Consensus 213 ~kELkNGRLAMlAi~G~~~Qe~vtG~g 239 (265)
..|+-||||||||+...+.-|++||++
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 379999999999999999999999986
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.92 E-value=7.3e-06 Score=71.53 Aligned_cols=42 Identities=33% Similarity=0.442 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-CCcchhhhhhh
Q 024588 206 RNAREWKLKEIKNGRLAMVAMLGIFVQASVT-HVGPIDNILEH 247 (265)
Q Consensus 206 e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vt-G~gPl~nL~~h 247 (265)
...++.|..|+.||||||+||+--++-|.+| |+||+.|+..-
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~E 172 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGE 172 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccc
Confidence 4556778899999999999999999999999 99999988643
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.46 E-value=9e-05 Score=67.36 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=33.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhh
Q 024588 211 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 247 (265)
Q Consensus 211 ~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~h 247 (265)
....|+-|||+|||||+..++-|.+||++.++|+...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3458999999999999999999999999999988654
No 32
>PHA02337 putative high light inducible protein
Probab=97.46 E-value=7.5e-05 Score=49.15 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=26.0
Q ss_pred HHHHHhhccchhhhhhhHhhhhhhhccCC
Q 024588 95 VQAELVHARFAMAGVAGILFTDLLRVTGI 123 (265)
Q Consensus 95 r~aElkHGRlAMlA~~G~~~~e~~~~~G~ 123 (265)
..+|..|||+||++++-.++.|++++.++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 36999999999999999999999887665
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.25 E-value=0.0081 Score=54.89 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 95 VQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 95 r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
.++|+.|||+||+|++-.++.|++++.|+.
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 579999999999999999999999877764
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=95.03 E-value=0.015 Score=51.08 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhccchhhhhhhHhhhhhhh-ccCCC
Q 024588 89 ESLRWYVQAELVHARFAMAGVAGILFTDLLR-VTGIR 124 (265)
Q Consensus 89 ~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~-~~G~~ 124 (265)
...+..+.-|+.|||+||++++--++.|+++ +.|+.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4677788899999999999999999999999 77875
No 35
>PLN02449 ferrochelatase
Probab=47.64 E-value=13 Score=37.67 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhccCCcchh
Q 024588 221 LAMVAMLGIFVQASVTHVGPID 242 (265)
Q Consensus 221 LAMlAi~G~~~Qe~vtG~gPl~ 242 (265)
+||+||+.+++-|+++|.+|+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
No 36
>COG3924 Predicted membrane protein [Function unknown]
Probab=36.38 E-value=21 Score=27.51 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=25.7
Q ss_pred Hhhccchh----hhhhhHhhhhhhhc--cCCCCCcchhcc
Q 024588 99 LVHARFAM----AGVAGILFTDLLRV--TGIRELPVWYEA 132 (265)
Q Consensus 99 lkHGRlAM----lA~~G~~~~e~~~~--~G~~~~P~w~~a 132 (265)
=|..|||. +=++||++...+.+ +|...+|.||+.
T Consensus 9 ~KEA~WAlgLtllYl~gW~v~AYlp~~t~G~~gfP~WFE~ 48 (80)
T COG3924 9 HKEARWALGLTLLYLAGWLVAAYLPGNTPGFTGFPLWFEM 48 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHH
Confidence 46778884 55678888887654 688788999974
No 37
>PHA00649 hypothetical protein
Probab=23.91 E-value=87 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhhccc-------hhhhhhhHhhhhh
Q 024588 86 EDPESLRWYVQAELVHARF-------AMAGVAGILFTDL 117 (265)
Q Consensus 86 ~~~~~l~~~r~aElkHGRl-------AMlA~~G~~~~e~ 117 (265)
.+|++++.+| +.+.|||- .||+++|..+..+
T Consensus 31 ~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 31 DVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4677777777 46777763 5888888887765
No 38
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=21.14 E-value=1e+02 Score=26.31 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.9
Q ss_pred HHHHHHhhhhHHHH
Q 024588 211 WKLKEIKNGRLAMV 224 (265)
Q Consensus 211 ~k~kELkNGRLAMl 224 (265)
.|.+++||+||+.+
T Consensus 135 ~~~~~~~~~r~~~~ 148 (150)
T cd07311 135 FQEASLRQKRLALL 148 (150)
T ss_pred HHHHHHHHHHHHhh
Confidence 47789999999975
Done!