Query 024588
Match_columns 265
No_of_seqs 214 out of 1206
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 10:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 5.6E-64 1.9E-68 458.0 -0.9 208 51-262 59-268 (269)
2 2wsc_4 Chlorophyll A-B binding 100.0 3.6E-62 1.2E-66 442.7 -1.4 199 55-262 52-250 (251)
3 3pl9_A Chlorophyll A-B binding 100.0 5.4E-60 1.9E-64 425.4 8.8 182 53-260 8-242 (243)
4 2wsc_3 LHCA3, type II chloroph 100.0 1.6E-60 5.5E-65 436.6 3.1 206 54-262 54-275 (276)
5 2bhw_A Chlorophyll A-B binding 100.0 7.2E-58 2.5E-62 410.5 18.4 196 51-263 16-228 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 3.5E-55 1.2E-59 394.7 3.5 191 53-263 42-240 (241)
7 2bhw_A Chlorophyll A-B binding 99.5 2.8E-14 9.7E-19 127.8 6.3 51 187-237 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 3.9E-15 1.3E-19 134.8 -2.2 54 188-241 68-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.4 3.6E-14 1.2E-18 127.8 3.5 52 72-124 172-223 (243)
10 2wsc_2 LHCA2, type II chloroph 99.4 8.9E-15 3E-19 133.6 -1.5 53 189-241 80-132 (269)
11 2wsc_3 LHCA3, type II chloroph 99.4 2.9E-14 9.9E-19 130.6 0.9 55 70-124 200-254 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 1E-13 3.4E-18 124.9 -0.6 48 189-236 61-108 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 28.3 36 0.0012 19.8 2.0 15 88-102 6-20 (26)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=5.6e-64 Score=458.04 Aligned_cols=208 Identities=51% Similarity=0.976 Sum_probs=154.0
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchh
Q 024588 51 VRAQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWY 130 (265)
Q Consensus 51 ~~~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~ 130 (265)
+..++|++|+|+.+.|.||||++|||||||||||++|+|+++|||++|||||||||||++|++++|+++..|+.+.|.|+
T Consensus 59 ~~~~~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~ 138 (269)
T 2wsc_2 59 VAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWY 138 (269)
T ss_dssp -----------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCC
T ss_pred ccCCCcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCcccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999988888788999
Q ss_pred ccccccccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCch-hHHHHH
Q 024588 131 EAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAR 209 (265)
Q Consensus 131 ~aG~~~~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~-d~e~~~ 209 (265)
++|...+ |.+.++++++|+++||++|++|+.++.+||+...++.|.+ ....+.|.+||||++||||||.+ |+++++
T Consensus 139 ~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~--~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~ 215 (269)
T 2wsc_2 139 TAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPN--NKLTGTDVGYPGGLWFDPLGWGSASPQKLK 215 (269)
T ss_dssp STTSSSS-CCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSS--CCSSTTSCSCTTCSSCCCSSSSSSCCCSCT
T ss_pred ccchhhh-hcchHHHHHHHHHHHHHHHHHHHhccccCCcccccccccc--ccccccccCCCCCcccCccccCcccHHHHH
Confidence 9876554 6666788899999999999999999989998776666532 22234567899999999999986 788889
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh-hhhcCccccchhhcccc
Q 024588 210 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL-EHLSDPWHKTIIQTLAN 262 (265)
Q Consensus 210 ~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~-~hl~dP~~~ni~~~~~~ 262 (265)
++|.+||||||||||||+|+++|+.+||++|++||. +||+|| |+||++++.+
T Consensus 216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 999999999999999999999999999999999999 999999 9999998865
No 2
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=3.6e-62 Score=442.71 Aligned_cols=199 Identities=52% Similarity=0.966 Sum_probs=146.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhcccc
Q 024588 55 QRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGA 134 (265)
Q Consensus 55 ~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~aG~ 134 (265)
+|++|+|+.+.|.||||++|||+|||||||++|+|+++|+|++|||||||||||++|++++|+++..|+.+.|.|+++|.
T Consensus 52 ~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~ 131 (251)
T 2wsc_4 52 KKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGK 131 (251)
T ss_dssp -----------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCS
T ss_pred hhhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999888887889999876
Q ss_pred ccccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHHHH
Q 024588 135 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLK 214 (265)
Q Consensus 135 ~~~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~k 214 (265)
..| +.+.++++++|+++||++|.+|+.++.+||++..++.|.+ ...++.+++||||+ ||||++.+ ++++|+|
T Consensus 132 ~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~--~~~~~~d~~yPGg~-FDPLgl~~----~~~~k~k 203 (251)
T 2wsc_4 132 EEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ--YSLPAGEVGYPGGI-FNPLNFAP----TLEAKEK 203 (251)
T ss_dssp SSC-SSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCS--SSSCCHHHHSSCCT-TCCCCCCS----SSSCTTH
T ss_pred Hhh-hccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccc--cccccccccCCCCc-cCccchhH----HHHHHHH
Confidence 554 5666777888999999999999999888988776665532 11222345799998 99999975 6789999
Q ss_pred HHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhcccc
Q 024588 215 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262 (265)
Q Consensus 215 ELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~~ 262 (265)
||||||| ||||+||++|+.+||++|++||.+||+||+|+||++++..
T Consensus 204 ELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 204 EIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp HHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred HHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 9999999 9999999999999999999999999999999999998754
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=5.4e-60 Score=425.44 Aligned_cols=182 Identities=44% Similarity=0.800 Sum_probs=124.2
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHH------------------------------------------
Q 024588 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPES------------------------------------------ 90 (265)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~------------------------------------------ 90 (265)
.++|+.|+|+.++|.||||++|||||||||||+++||.
T Consensus 8 ~~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 87 (243)
T 3pl9_A 8 STDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVF 87 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchh
Confidence 46899999999999999999999999999999999873
Q ss_pred -HHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhccccccc----cc------cchhhHHHHHHHHhHhhhhh
Q 024588 91 -LRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYEAGAVEF----KF------ASTRTLFIVQLLLMGFAETK 159 (265)
Q Consensus 91 -l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~aG~~~~----~f------~~~~~l~~~ql~~~G~~E~~ 159 (265)
++||||+|||||||||||++|++++|++++ ..|+++|...+ ++ .++.+++++|+++||++|.+
T Consensus 88 ~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g------~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~ 161 (243)
T 3pl9_A 88 GLQRFRECELIHGRWAMLATLGALTVEGLTG------ITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQ 161 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhcchhHHHHHHHHHhHHhhcC------cccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999863 23777654321 11 13457889999999999999
Q ss_pred hhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCc
Q 024588 160 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 239 (265)
Q Consensus 160 r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~g 239 (265)
|+.+. .+ .+..||||+ ||||||.+|+++++++|.+||||||||||||+|+++|+++||++
T Consensus 162 R~~~~-~~------------------~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 162 RNAEL-DT------------------EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp HHSCC-CT------------------TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhccc-CC------------------ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 98763 11 123589998 99999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCccccchhhcc
Q 024588 240 PIDNILEHLSDPWHKTIIQTL 260 (265)
Q Consensus 240 Pl~nL~~hl~dP~~~ni~~~~ 260 (265)
|++||.+||+||+|+||+++|
T Consensus 222 pl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 222 PLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp HHHHHHHHHHCSGGGSTTTTT
T ss_pred hHHHHHHHhcCcchhhhhhhc
Confidence 999999999999999999986
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.6e-60 Score=436.61 Aligned_cols=206 Identities=47% Similarity=0.913 Sum_probs=125.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHH------HHHHHHHHhhccchhhhhhhHhhhhhhhccCCC--C
Q 024588 54 QQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESL------RWYVQAELVHARFAMAGVAGILFTDLLRVTGIR--E 125 (265)
Q Consensus 54 ~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l------~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~--~ 125 (265)
++|++|+|+.+.|.||||++||||||||||| +|++++ +|+|++|||||||||||++|++++|+++..|+. +
T Consensus 54 ~~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~ 132 (276)
T 2wsc_3 54 SDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQE 132 (276)
T ss_dssp --------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCS
T ss_pred CCccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccccccccc
Confidence 3899999999999999999999999999999 688889 999999999999999999999999999887765 3
Q ss_pred Ccc-hhccccc------cccccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhh-hhcCCCCCCCCCCCCC
Q 024588 126 LPV-WYEAGAV------EFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA-ALEGLEPGYPGGPLLN 197 (265)
Q Consensus 126 ~P~-w~~aG~~------~~~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~-~~~g~~~~yPGd~gFD 197 (265)
.|. |++.+.. .| +.+..+++++|+++||++|.+|++++.+||+...++.| |.+. ..+..+++||||++||
T Consensus 133 ~p~~w~~~g~ip~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~-g~~~~~~~~~d~~yPG~~~fD 210 (276)
T 2wsc_3 133 TALPWFRTGFIPPAGTYNY-WADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL-GLEKGLGGSGEPAYPGGPFFN 210 (276)
T ss_dssp SCCSSSSCCCC-----CCC-SCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSS-CSCCCCCCCSSCTTTSSSSCC
T ss_pred CcchhhhhhcccchhHHHH-hccchHHHHHHHHHHHHHHHhhhcccccCCcccccccc-cccccccccccccCCCccccc
Confidence 454 8874332 22 45556778899999999999999998889887654433 3221 1223467899999999
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhcccc
Q 024588 198 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 262 (265)
Q Consensus 198 PLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~~ 262 (265)
||||.+|+++++++|++||||||||||||+|+++|+.+||++|++||.+||+||+|+||++++.+
T Consensus 211 Plgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 211 PLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp CCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred chhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 99999988889999999999999999999999999999999999999999999999999998864
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=7.2e-58 Score=410.54 Aligned_cols=196 Identities=40% Similarity=0.711 Sum_probs=167.6
Q ss_pred hccCCCCCCCCCC--CCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC-CCc
Q 024588 51 VRAQQRPTWLPGV--DPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR-ELP 127 (265)
Q Consensus 51 ~~~~~r~~~lP~~--~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~-~~P 127 (265)
...++|++|+|++ +.|.||||++|||+|||||||++|+|+++||||+|||||||||||++|++++|+++..|+. ..+
T Consensus 16 ~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~ 95 (232)
T 2bhw_A 16 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEA 95 (232)
T ss_dssp TSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCC
T ss_pred ccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCccc
Confidence 4467899999763 8999999999999999999999999999999999999999999999999999999877753 345
Q ss_pred chhcccccccc--------------ccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCC
Q 024588 128 VWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGG 193 (265)
Q Consensus 128 ~w~~aG~~~~~--------------f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd 193 (265)
.|+++|...+. ...+..++++|+++||++|.+|+.+- +. | +..++.||||
T Consensus 96 ~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g--~~---------g-----~~~d~~~Pg~ 159 (232)
T 2bhw_A 96 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG--PL---------G-----EVVDPLYPGG 159 (232)
T ss_dssp SGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE--TT---------E-----ECSSSSCCCT
T ss_pred ccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC--cc---------c-----ccccccCCCc
Confidence 69887753221 11234567788999999999987651 10 0 1234569999
Q ss_pred CCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCccccchhhccccC
Q 024588 194 PLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 263 (265)
Q Consensus 194 ~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl~nL~~hl~dP~~~ni~~~~~~~ 263 (265)
+ ||||||.+|+++++++|.+|||||||||||++|+++|+.+||++|++||.+|++||+|+||+++++++
T Consensus 160 ~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~ 228 (232)
T 2bhw_A 160 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNF 228 (232)
T ss_dssp T-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTT
T ss_pred c-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhh
Confidence 8 99999999999999999999999999999999999999999999999999999999999999987765
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=3.5e-55 Score=394.73 Aligned_cols=191 Identities=40% Similarity=0.778 Sum_probs=131.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCCCCcchhc-
Q 024588 53 AQQRPTWLPGVDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIRELPVWYE- 131 (265)
Q Consensus 53 ~~~r~~~lP~~~~p~~l~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~~~P~w~~- 131 (265)
...|+.|+|+.+.|.||||++|||+||||+||++|+|+++|||++|||||||||||++|+++||+++..++.+.+.|..
T Consensus 42 ~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~ 121 (241)
T 2wsc_1 42 IRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAL 121 (241)
T ss_dssp -------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSC
T ss_pred cccccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhcc
Confidence 3457789999999999999999999999999999999999999999999999999999999999976432221111211
Q ss_pred -cccccc-----cccchhhHHHHHHHHhHhhhhhhhccccCCCCCCCCCcccchhhhhcCCCCCCCCCCCCCccCCchhH
Q 024588 132 -AGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDI 205 (265)
Q Consensus 132 -aG~~~~-----~f~~~~~l~~~ql~~~G~~E~~r~~~~~~pg~~~~~~~f~G~~~~~~g~~~~yPGd~gFDPLgl~~d~ 205 (265)
.|...| .+..++.++++|+++||++|.+|+.+. + ..++.|||| +||||||.+|+
T Consensus 122 ~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~-----------~~~~~yPgg-~fDPlgl~~~~ 181 (241)
T 2wsc_1 122 PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D-----------PEKKKYPGG-AFDPLGYSKDP 181 (241)
T ss_dssp SSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S-----------SCCSSSCSC-CSCSSSCSCSS
T ss_pred CCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C-----------CCCCCCCCC-cccccccccch
Confidence 121112 123456778889999999999886431 1 013469999 49999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhhcCccccchhhccccC
Q 024588 206 RNAREWKLKEIKNGRLAMVAMLGIFVQA-SVTHVGPIDNILEHLSDPWHKTIIQTLANS 263 (265)
Q Consensus 206 e~~~~~k~kELkNGRLAMlAi~G~~~Qe-~vtG~gPl~nL~~hl~dP~~~ni~~~~~~~ 263 (265)
++++++|.+|||||||||||++|+++|+ .+||++|++||.+|++||+|+||++++.+.
T Consensus 182 ~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~~ 240 (241)
T 2wsc_1 182 KKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240 (241)
T ss_dssp SSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC----------
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeeccC
Confidence 9999999999999999999999999999 589999999999999999999999988763
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.48 E-value=2.8e-14 Score=127.80 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 024588 187 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 237 (265)
Q Consensus 187 ~~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG 237 (265)
+..+|||++||||||++|++.++++|..||||||+||+|++|+++||+++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 345899999999999999999999999999999999999999999998753
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.44 E-value=3.9e-15 Score=134.82 Aligned_cols=54 Identities=37% Similarity=0.599 Sum_probs=39.1
Q ss_pred CCCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 024588 188 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241 (265)
Q Consensus 188 ~~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 241 (265)
..+|||++||||||++|++.++++|.+||||||+||+|++|+++||++++.+.+
T Consensus 68 g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 358999999999999999999999999999999999999999999999998766
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.43 E-value=3.6e-14 Score=127.77 Aligned_cols=52 Identities=38% Similarity=0.551 Sum_probs=49.2
Q ss_pred CCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 72 TLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 72 ~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
.+|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.|++
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999987764
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.42 E-value=8.9e-15 Score=133.57 Aligned_cols=53 Identities=32% Similarity=0.488 Sum_probs=36.0
Q ss_pred CCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 024588 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 241 (265)
Q Consensus 189 ~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vtG~gPl 241 (265)
.+|||++||||||.+|++.++++|.+||||||+||+|++|+++||++++.+.+
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 47999999999999999999999999999999999999999999999876543
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.40 E-value=2.9e-14 Score=130.60 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=46.3
Q ss_pred CCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhccchhhhhhhHhhhhhhhccCCC
Q 024588 70 DGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRVTGIR 124 (265)
Q Consensus 70 ~G~~pGd~GfDPlgl~~~~~~l~~~r~aElkHGRlAMlA~~G~~~~e~~~~~G~~ 124 (265)
|..+|||++|||+||++++++++++|++||||||+||||++|+++||++++.|+.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence 4579999999999999888889999999999999999999999999999987765
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.33 E-value=1e-13 Score=124.90 Aligned_cols=48 Identities=33% Similarity=0.484 Sum_probs=45.7
Q ss_pred CCCCCCCCCccCCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 024588 189 GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 236 (265)
Q Consensus 189 ~yPGd~gFDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Qe~vt 236 (265)
..|||++||||||++|+++++++|..||||||+||+|++|+++||+++
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 479999999999999999999999999999999999999999999874
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=28.34 E-value=36 Score=19.79 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhc
Q 024588 88 PESLRWYVQAELVHA 102 (265)
Q Consensus 88 ~~~l~~~r~aElkHG 102 (265)
+|-+..+|++|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999999853
Done!