Query 024590
Match_columns 265
No_of_seqs 177 out of 627
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 2E-29 4.4E-34 221.9 14.9 188 71-263 3-217 (218)
2 COG5066 SCS2 VAMP-associated p 99.9 3.2E-25 6.9E-30 196.8 11.7 118 77-200 3-122 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.8E-22 3.8E-27 158.4 13.0 102 77-184 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.4 5.4E-06 1.2E-10 64.5 10.9 68 75-143 2-72 (102)
5 PF00345 PapD_N: Pili and flag 96.5 0.072 1.6E-06 42.8 12.0 62 77-142 2-72 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.4 1.1 2.5E-05 43.8 13.9 119 77-217 231-362 (426)
7 PRK09918 putative fimbrial cha 93.9 1.8 4E-05 39.2 13.3 108 76-202 25-137 (230)
8 PF07610 DUF1573: Protein of u 91.2 0.85 1.8E-05 31.1 5.7 42 99-141 2-44 (45)
9 PF11614 FixG_C: IG-like fold 90.5 1.5 3.3E-05 35.0 7.5 67 77-143 13-83 (118)
10 PRK15249 fimbrial chaperone pr 89.5 9.4 0.0002 35.2 12.8 65 75-143 28-103 (253)
11 PRK11385 putativi pili assembl 88.8 15 0.00031 33.7 13.4 111 75-202 26-148 (236)
12 PRK09926 putative chaperone pr 88.0 3.9 8.5E-05 37.4 9.2 65 75-143 25-99 (246)
13 PRK15299 fimbrial chaperone pr 87.4 16 0.00035 32.9 12.7 112 75-202 22-141 (227)
14 PRK15192 fimbrial chaperone Bc 85.8 25 0.00054 32.3 13.1 107 76-202 23-143 (234)
15 PRK15246 fimbrial assembly cha 85.7 28 0.0006 31.8 13.3 114 76-202 11-134 (233)
16 PRK15211 fimbrial chaperone pr 85.4 14 0.0003 33.7 11.2 65 75-143 22-92 (229)
17 PRK15295 fimbrial assembly cha 84.9 7.5 0.00016 35.2 9.2 63 75-143 19-90 (226)
18 COG3121 FimC P pilus assembly 83.6 35 0.00075 31.1 13.5 111 75-203 27-147 (235)
19 PF06280 DUF1034: Fn3-like dom 81.4 4.6 0.0001 32.0 5.7 52 92-143 7-79 (112)
20 PRK15208 long polar fimbrial c 80.5 15 0.00032 33.3 9.4 65 75-143 21-91 (228)
21 TIGR03079 CH4_NH3mon_ox_B meth 79.8 4.6 9.9E-05 39.7 6.1 53 91-143 280-353 (399)
22 PRK15195 fimbrial chaperone pr 79.6 45 0.00097 30.3 12.2 65 75-143 25-95 (229)
23 PRK15254 fimbrial chaperone pr 77.3 59 0.0013 29.9 13.0 65 75-143 16-86 (239)
24 PRK15188 fimbrial chaperone pr 76.7 60 0.0013 29.6 12.5 113 75-202 27-145 (228)
25 PRK15290 lfpB fimbrial chapero 76.5 63 0.0014 29.8 13.0 113 75-202 37-157 (243)
26 PF10633 NPCBM_assoc: NPCBM-as 75.7 5.5 0.00012 29.5 4.3 53 91-143 3-59 (78)
27 PF06030 DUF916: Bacterial pro 72.4 42 0.0009 27.6 9.2 60 84-143 18-102 (121)
28 smart00809 Alpha_adaptinC2 Ada 71.8 28 0.00062 26.6 7.7 52 92-143 17-72 (104)
29 PF00927 Transglut_C: Transglu 70.2 20 0.00044 27.9 6.6 53 91-143 13-75 (107)
30 PRK15218 fimbrial chaperone pr 67.1 40 0.00087 30.7 8.7 110 76-202 19-140 (226)
31 PF11611 DUF4352: Domain of un 66.1 41 0.0009 26.1 7.7 55 90-144 33-101 (123)
32 PF02883 Alpha_adaptinC2: Adap 65.0 20 0.00043 28.2 5.6 53 91-143 22-78 (115)
33 PF04744 Monooxygenase_B: Mono 64.3 20 0.00044 35.3 6.5 66 75-143 247-334 (381)
34 PRK15224 pili assembly chapero 63.9 46 0.00099 30.6 8.5 62 76-143 29-97 (237)
35 PRK15274 putative periplasmic 61.7 1.4E+02 0.003 27.8 12.6 65 75-143 26-97 (257)
36 PRK15285 putative fimbrial cha 59.6 1.5E+02 0.0032 27.5 12.4 64 76-143 26-96 (250)
37 PRK15233 putative fimbrial cha 58.7 61 0.0013 30.0 8.4 62 76-143 41-109 (246)
38 PF05506 DUF756: Domain of unk 58.6 38 0.00082 25.8 6.0 44 96-142 21-65 (89)
39 PF12690 BsuPI: Intracellular 56.1 55 0.0012 25.1 6.5 48 95-142 2-68 (82)
40 PF02753 PapD_C: Pili assembly 53.5 16 0.00034 26.3 3.0 43 99-141 1-44 (68)
41 PF13473 Cupredoxin_1: Cupredo 53.2 46 0.001 25.8 5.8 54 77-143 30-83 (104)
42 PHA01327 hypothetical protein 49.5 15 0.00033 25.6 2.2 14 244-257 20-33 (49)
43 PF03173 CHB_HEX: Putative car 46.0 20 0.00043 31.3 2.9 33 111-143 69-103 (164)
44 PRK15308 putative fimbrial pro 45.1 1.2E+02 0.0026 27.9 8.0 85 75-173 16-118 (234)
45 PF00553 CBM_2: Cellulose bind 42.3 40 0.00086 26.4 3.9 49 95-143 15-83 (101)
46 PF14796 AP3B1_C: Clathrin-ada 41.4 2.3E+02 0.005 24.3 9.2 50 93-142 85-138 (145)
47 PRK15253 putative fimbrial ass 40.6 3E+02 0.0064 25.4 11.5 63 75-143 33-107 (242)
48 TIGR02745 ccoG_rdxA_fixG cytoc 39.8 2.3E+02 0.0049 28.4 9.6 69 76-144 327-399 (434)
49 PF07233 DUF1425: Protein of u 37.5 1.6E+02 0.0035 22.9 6.6 51 92-142 23-80 (94)
50 PF13205 Big_5: Bacterial Ig-l 35.6 1.7E+02 0.0037 22.0 6.5 56 84-142 26-84 (107)
51 smart00637 CBD_II CBD_II domai 35.4 1.6E+02 0.0034 22.3 6.2 24 119-142 50-75 (92)
52 PF07705 CARDB: CARDB; InterP 34.7 1.4E+02 0.003 21.9 5.7 53 91-143 17-70 (101)
53 PF08277 PAN_3: PAN-like domai 32.5 59 0.0013 23.1 3.2 30 81-113 42-71 (71)
54 PF05753 TRAP_beta: Translocon 32.2 2.5E+02 0.0054 24.7 7.7 52 91-143 36-96 (181)
55 PF11538 Snurportin1: Snurport 30.7 39 0.00084 23.1 1.8 15 244-258 14-28 (40)
56 COG3354 FlaG Putative archaeal 30.5 1.6E+02 0.0034 25.7 5.8 67 73-142 50-128 (154)
57 PRK06655 flgD flagellar basal 29.5 2.1E+02 0.0045 26.1 6.9 82 61-142 91-178 (225)
58 cd04094 selB_III This family r 27.8 2.7E+02 0.0059 21.2 6.4 32 127-167 54-85 (97)
59 COG3565 Predicted dioxygenase 27.5 85 0.0018 26.6 3.6 44 65-112 84-127 (138)
60 smart00605 CW CW domain. 26.1 1.4E+02 0.0031 22.7 4.6 33 83-119 47-80 (94)
61 PF11616 EZH2_WD-Binding: WD r 25.8 31 0.00066 22.3 0.6 10 242-251 18-27 (30)
62 COG3311 AlpA Predicted transcr 23.3 43 0.00093 25.5 1.1 19 232-251 45-65 (70)
63 PF09640 DUF2027: Domain of un 22.5 2.9E+02 0.0064 24.3 6.2 66 96-173 19-84 (162)
64 PRK15295 fimbrial assembly cha 21.7 2.1E+02 0.0045 25.9 5.4 49 83-140 148-197 (226)
65 PRK15249 fimbrial chaperone pr 20.9 1.9E+02 0.0041 26.6 5.0 42 98-140 177-219 (253)
66 PF06483 ChiC: Chitinase C; I 20.2 1.1E+02 0.0024 27.3 3.2 26 107-143 116-141 (180)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-29 Score=221.85 Aligned_cols=188 Identities=37% Similarity=0.490 Sum_probs=162.7
Q ss_pred CCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCc
Q 024590 71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENN 150 (265)
Q Consensus 71 ~p~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~ 150 (265)
+..+.+|.++|..+|+|.+++.+++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|.++ |. .
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q---~~-~ 78 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQ---PF-E 78 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEec---cC-c
Confidence 3466889999988999999999999999999999999999999999999999999999999999999999886 42 2
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCC-CCChhhhhhccC--CCcceEEEEEEEEecCCCCChHHHHH---HHhHHHHHHHHHH
Q 024590 151 ERQPLDQKSKDKFKIMSLKVKGG-IDYVPELFDEQK--DQVTVERILRVVFLNAERPSPALEKL---KLQLAEAEAALEA 224 (265)
Q Consensus 151 E~pp~~~~~kDKFLVqS~~v~~~-~d~~~elFk~~~--~~~i~e~kLrV~fv~p~~pSp~~~~l---~~~~~~a~~~~ea 224 (265)
.. |.+.+|+|||+||++.++.+ ...+.++|+..+ +..+.+.+++|.|+.|..+....... ..+....++...+
T Consensus 79 ~~-P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (218)
T KOG0439|consen 79 KS-PPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEA 157 (218)
T ss_pred cC-chhhcccceEEEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCcccccccc
Confidence 22 77888999999999999986 677899999988 78889999999999988766665555 6666777777777
Q ss_pred hcCCCCCC---CCceeccccchhhh------------------HHHHHHHHHHhhhhhcc
Q 024590 225 RKRPPPDT---GPRVVGEGLVIDEW------------------KERREKYLARQQVEAVD 263 (265)
Q Consensus 225 ~~~~~~~~---~~~~~~e~~~~~~~------------------~~~r~~~~~~~~~~~~~ 263 (265)
........ .+...++.+++++| +++++++++.+|.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (218)
T KOG0439|consen 158 TKEASDGEVCVKSKEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVI 217 (218)
T ss_pred ccccCcccccchhhhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhcc
Confidence 77776654 47788999999999 89999999999987654
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.92 E-value=3.2e-25 Score=196.76 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=105.7
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~ 156 (265)
|.++| .+.|..++..+.++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+|+ ++..| |-++
T Consensus 3 veisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq---~l~eE-papd 76 (242)
T COG5066 3 VEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQ---GLTEE-PAPD 76 (242)
T ss_pred eEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEee---ccccC-CCCC
Confidence 67787 688888889999999999999999999999999999999999999999999999999997 54444 4678
Q ss_pred CCCCCeEEEEEEEeCCCC--CChhhhhhccCCCcceEEEEEEEEec
Q 024590 157 QKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTVERILRVVFLN 200 (265)
Q Consensus 157 ~~~kDKFLVqS~~v~~~~--d~~~elFk~~~~~~i~e~kLrV~fv~ 200 (265)
.+|+||||||++..+... .++.++|++..+.-+.++||+|+|..
T Consensus 77 fKCrdKFLiqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 77 FKCRDKFLIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred ccccceeEEEEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence 999999999999998753 45799999998888999999999983
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.89 E-value=1.8e-22 Score=158.38 Aligned_cols=102 Identities=31% Similarity=0.500 Sum_probs=81.6
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~ 156 (265)
|.|+|.+.|.|++++++..++.|+|+|+++.+||||||||+|.+|+|+|+.|+|.||+++.|.|+++ |.... +.
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~---~~~~~--~~- 75 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQ---PFDFE--PS- 75 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTT--TT-
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEE---ecccC--CC-
Confidence 7899999999999999999999999999999999999999999999999999999999999999996 43322 11
Q ss_pred CCCCCeEEEEEEEeCCCCC----Chhhhhhcc
Q 024590 157 QKSKDKFKIMSLKVKGGID----YVPELFDEQ 184 (265)
Q Consensus 157 ~~~kDKFLVqS~~v~~~~d----~~~elFk~~ 184 (265)
...+|||+|+++.++++.. ....+|++.
T Consensus 76 ~~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 76 NKKKDKFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp STSSEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred CCCCCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 2239999999999987653 356677654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.38 E-value=5.4e-06 Score=64.51 Aligned_cols=68 Identities=29% Similarity=0.408 Sum_probs=59.5
Q ss_pred CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeCC--CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTA--PKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~-e~~k~vss~LtLkN~S~~~VAFKVKTTa--Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
..|.++|. +|.|-. ..|...+..|+|+|.+..+..|+|+.-. ...|.|.|..|+|+||+++.+.|.+.
T Consensus 2 P~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 2 PTLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CEEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence 35899995 999976 4677888999999999999999998543 56799999999999999999999996
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.52 E-value=0.072 Score=42.77 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=51.0
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC---C------cceEeeCCeeeeCCCCeEEEEEEE
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA---P------KSCYMRPPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa---P------k~Y~VRPn~GiL~Pgesi~V~Vtl 142 (265)
|.|+|. .+.|.. + +...+++|+|.++.++.+.+.... . ..|.|-|+.-.|+||++..|.|..
T Consensus 2 i~i~~t-rii~~~--~-~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~ 72 (122)
T PF00345_consen 2 IQISPT-RIIFNE--S-QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR 72 (122)
T ss_dssp EEESSS-EEEEET--T-SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred EEEccE-EEEEeC--C-CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence 678885 777775 2 336899999999999999987654 1 268999999999999999999944
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.39 E-value=1.1 Score=43.82 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=79.7
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEE-EEcCCCCeEEEEEeeC------------CCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVR-LKNTSKSHVAFKFQTT------------APKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~Lt-LkN~S~~~VAFKVKTT------------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
..+.+.-.|.|...++..+...|. |.|.+..-|-|..+-- ....|+.....|+|.||++..|.|+.+
T Consensus 231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~ 310 (426)
T PF14646_consen 231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK 310 (426)
T ss_pred CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe
Confidence 445556689999999987777777 9999999999986532 256799999999999999999999996
Q ss_pred ccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCCCCChHHHHHHHhHHH
Q 024590 144 VEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAERPSPALEKLKLQLAE 217 (265)
Q Consensus 144 ~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~~pSp~~~~l~~~~~~ 217 (265)
...+ ...+....+...+ .+|. ......+|..+-+++..-..-++.+++.|+.
T Consensus 311 s~~~---------Gif~E~W~L~t~P---------~l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~ 362 (426)
T PF14646_consen 311 SRKV---------GIFKERWELRTFP---------PLFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELAR 362 (426)
T ss_pred CCCc---------eEEEEEEEEEEec---------cccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHH
Confidence 2211 2345555555422 2333 1124567777776654433344455544433
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=93.93 E-value=1.8 Score=39.16 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=67.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCC-----cceEeeCCeeeeCCCCeEEEEEEEeccCCCCc
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-----KSCYMRPPGGVLAPGDSIIATVFKFVEAPENN 150 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaP-----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~ 150 (265)
-|.++|. .+.|... +...+|+|+|.++.++......... .-|.|.|+.-.|+||+...|.|.+....
T Consensus 25 ~v~l~~t-Rvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~l---- 96 (230)
T PRK09918 25 GMVPETS-VVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGS---- 96 (230)
T ss_pred eEEEccE-EEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCC----
Confidence 4788885 7777643 3347999999999876665543211 3599999999999999999999875211
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 151 ERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 151 E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
|.+.. --|-+....++...+. +..=......++++-|.+..
T Consensus 97 ---p~drE--s~f~l~v~~IP~~~~~------~~~l~ia~r~~iklfyRP~~ 137 (230)
T PRK09918 97 ---PLNTE--HLLRVSFEGVPPKPGG------KNKVVMPIRQDLPVLIQPAA 137 (230)
T ss_pred ---CCCee--EEEEEEEEEcCCCCCC------CCEEEEEEEeEEEEEEeCCC
Confidence 22221 2345555555542221 11112223557788777654
No 8
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=91.19 E-value=0.85 Score=31.10 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=35.2
Q ss_pred EEEEcCCCCeE-EEEEeeCCCcceEeeCCeeeeCCCCeEEEEEE
Q 024590 99 VRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATVF 141 (265)
Q Consensus 99 LtLkN~S~~~V-AFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vt 141 (265)
++|+|+++.++ ..+|+|+ =+-..+......|.||++..|.|+
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEE
Confidence 68999999866 6677764 677888888899999999999886
No 9
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.49 E-value=1.5 Score=35.02 Aligned_cols=67 Identities=13% Similarity=0.303 Sum_probs=39.3
Q ss_pred EEeeCCCceEee-CCCCC-eeEEEEEEEcCCCCeEEEEEeeCCCcceEe-eCCeee-eCCCCeEEEEEEEe
Q 024590 77 LRLDPSNNLYFP-YEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGV-LAPGDSIIATVFKF 143 (265)
Q Consensus 77 L~ldP~~eL~F~-~e~~k-~vss~LtLkN~S~~~VAFKVKTTaPk~Y~V-RPn~Gi-L~Pgesi~V~Vtlq 143 (265)
|.+-+..-..|. -..|. .-..+|+|.|+++++.-|.|+...+..+.+ .|...+ |.||++..+.|++.
T Consensus 13 ~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 13 LNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence 334443333333 33343 445999999999999999999888888888 675554 99999999998886
No 10
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=89.46 E-value=9.4 Score=35.19 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=48.1
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C-----cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P-----KSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa------P-----k~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
--|.|+|. .+.|+.. ....+|+|.|.++.++....-+.. | .-|.|.|+.--|+||+...|.|...
T Consensus 28 A~l~l~~T-Rviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 28 ASVTILGS-RIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred eEEEeCce-EEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 34889985 7777643 234799999999887555442211 1 1399999999999999999999874
No 11
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=88.84 E-value=15 Score=33.74 Aligned_cols=111 Identities=17% Similarity=0.275 Sum_probs=66.4
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC------------CCcceEeeCCeeeeCCCCeEEEEEEE
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT------------APKSCYMRPPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT------------aPk~Y~VRPn~GiL~Pgesi~V~Vtl 142 (265)
.-|.+++. .+.|+. + ....+|+|.|.++.++.-..... ...-|.|.|+.--|+||+...+.|..
T Consensus 26 A~v~l~~T-RvIy~~--~-~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~ 101 (236)
T PRK11385 26 AGVVVGGT-RFIFPA--D-RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR 101 (236)
T ss_pred eeEEeCce-EEEEcC--C-CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence 45788885 777764 2 34479999999998644333211 11249999999999999999999988
Q ss_pred eccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 143 FVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 143 q~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
... ... |.| .---|-+-...+|+..+. ...=......+|++-|.+..
T Consensus 102 ~~~----~~L-P~D--RESlf~lnv~~IPp~~~~------~n~L~iair~riKLFyRP~~ 148 (236)
T PRK11385 102 TES----DIL-PVD--RETLFELSIASVPSGKVE------NQSVKVAMRSVFKLFWRPEG 148 (236)
T ss_pred CCC----CCC-CCC--ceEEEEEEEEecCCCcCC------CceEEEEEEeeEEEEEcccc
Confidence 520 011 222 123444555555542211 11112334677888776644
No 12
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=87.98 E-value=3.9 Score=37.44 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=50.0
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCc----------ceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK----------SCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk----------~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
--|.++|. .+.|+.. ....+|+|.|.++.++.-..-....+ -|.|.|+.--|+||+...|.|...
T Consensus 25 A~i~l~~T-RvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 25 ADIVISGT-RIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred eeEEeCce-EEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 45889995 7777752 33479999999998776655433211 399999999999999999999975
No 13
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=87.37 E-value=16 Score=32.94 Aligned_cols=112 Identities=8% Similarity=0.136 Sum_probs=66.9
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC--------CcceEeeCCeeeeCCCCeEEEEEEEeccC
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA--------PKSCYMRPPGGVLAPGDSIIATVFKFVEA 146 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa--------Pk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~ 146 (265)
.-|.++|. .+.|+.. .-..+|+|.|.++.++.-..-+.. ..-|.|.|+.--|+||+...|.|.....
T Consensus 22 a~i~l~~T-Rvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~- 96 (227)
T PRK15299 22 AGINIGTT-RVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG- 96 (227)
T ss_pred eeEEECce-EEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-
Confidence 34888885 7777643 234799999998876554432211 1239999999999999999999987421
Q ss_pred CCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 147 PENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 147 P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
.. |.+.. --|-+....+|+..+... ...-......+|++.|-++.
T Consensus 97 ----~l-P~DrE--slf~lnv~eIP~~~~~~~----~n~l~iavr~riKLfyRP~~ 141 (227)
T PRK15299 97 ----NL-PEDRE--SLYWLDIKSIPSSNPDNK----HNTLMLAVKAEFKLIYRPKA 141 (227)
T ss_pred ----CC-CCcce--EEEEEEeEecCCCCcccc----cceEEEEEeeeeeEEEcccc
Confidence 01 32222 335555555554221100 00112334677888887654
No 14
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=85.76 E-value=25 Score=32.25 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=65.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC----------C----CcceEeeCCeeeeCCCCeEEEEEE
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT----------A----PKSCYMRPPGGVLAPGDSIIATVF 141 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT----------a----Pk~Y~VRPn~GiL~Pgesi~V~Vt 141 (265)
-|.++.. .+.|+. + ....+|+|.|.++.+ |=|++. . ..-|.|.|+.--|+||+...+.|.
T Consensus 23 gi~l~~T-RvIy~~--~-~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~ 96 (234)
T PRK15192 23 GVVIGGT-RFIYHA--G-APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVV 96 (234)
T ss_pred eEEeCce-EEEEcC--C-CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEE
Confidence 4677774 677764 2 234799999999986 555541 1 113999999999999999999998
Q ss_pred EeccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 142 KFVEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 142 lq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
.... . . |.| .---|-+....+|+..+. ...=......+|++-|.+..
T Consensus 97 ~~~~-~----L-P~D--RESlf~lnv~~IPp~~~~------~n~l~iair~riKlFYRP~~ 143 (234)
T PRK15192 97 YTGA-P----L-PAD--RESLFTLSIAAIPSGKPE------ANRVQMAFRSALKLLYRPEG 143 (234)
T ss_pred ECCC-C----C-CCc--ceEEEEEEEEecCCCCCC------CcEEEEEEEeeeeEEEcccc
Confidence 8521 1 1 222 223455555555552210 11112234677777777654
No 15
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=85.67 E-value=28 Score=31.84 Aligned_cols=114 Identities=13% Similarity=0.212 Sum_probs=66.7
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----cceEeeCCeeeeCCCCeEEEEEEEecc
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKFVE 145 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa------P----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e 145 (265)
-|.|++. .+.|+.. ....+|+|.|.++.++.-..-... | .-|.|.|+.--|+||+...|.|.....
T Consensus 11 ~v~l~~T-RvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~ 86 (233)
T PRK15246 11 AVNIDRT-RIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSR 86 (233)
T ss_pred EEEECce-EEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCC
Confidence 4778884 7777742 334799999999886443331111 1 149999999999999999999997421
Q ss_pred CCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 146 ~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
. .. |.|. ---|-+....+++..+...+ .+..=......+|++-|.+..
T Consensus 87 ~----~L-P~DR--ESlf~lnv~~IP~~~~~~~~--~~~~l~iair~rIKlFyRP~~ 134 (233)
T PRK15246 87 Q----QL-ATDR--ESLFWLNIYQIPPVTQDIKN--HPRKLVLPLRLRLKILIRPTG 134 (233)
T ss_pred C----CC-CCCc--eEEEEEEEEEcCCCCccccc--ccceEEEEeeeEEEEEECCcc
Confidence 0 11 2221 12355555555553221000 000112234677888887754
No 16
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=85.36 E-value=14 Score=33.70 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=47.2
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC------CCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
.-|.+++. .+.|+. + .-..+|+|+|.++.++.-..... ...-|.|.|+.--|+||+...|.|...
T Consensus 22 A~v~l~~T-RvIy~~--~-~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 92 (229)
T PRK15211 22 AAFVLNGT-RFIYDE--G-RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKT 92 (229)
T ss_pred EEEEECce-EEEEcC--C-CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 34788884 677764 2 23489999999988744333221 112499999999999999999999885
No 17
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=84.93 E-value=7.5 Score=35.24 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee--C--C-----CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT--T--A-----PKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT--T--a-----Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
--|.+++. .+.|+.. ....+|+|.|.++.++. |++ . . ..-|.|.|+.--|+||+...|.|...
T Consensus 19 A~i~l~~T-RvI~~~~---~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 19 ASIVVGGT-RLVFDGN---NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS 90 (226)
T ss_pred ccEEeCce-EEEEeCC---CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 34788885 7777652 23479999999988643 443 1 1 12499999999999999999999874
No 18
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.57 E-value=35 Score=31.07 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=72.6
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-------CCcceEeeCCeeeeCCCCeEEEEEEEeccCC
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-------APKSCYMRPPGGVLAPGDSIIATVFKFVEAP 147 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT-------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P 147 (265)
--+.+++. .+.|+.. ....+|+|.|.++.++.-.+-.- ...-|.|.|+.-.|+||+...|.|..... +
T Consensus 27 A~v~i~~T-RiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~ 101 (235)
T COG3121 27 AGVVLGGT-RIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-K 101 (235)
T ss_pred eeEEecce-EEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-C
Confidence 34777875 6677643 23479999998888988885543 24459999999999999999999998631 1
Q ss_pred CCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCC---CcceEEEEEEEEecCCC
Q 024590 148 ENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKD---QVTVERILRVVFLNAER 203 (265)
Q Consensus 148 ~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~---~~i~e~kLrV~fv~p~~ 203 (265)
. |.| ...-|-+.-..+|.... +.... ......+|++-|.++.-
T Consensus 102 ----l-P~d--rEslf~lnv~eIPp~~~------~~~~~n~lq~a~r~riKlf~RP~~l 147 (235)
T COG3121 102 ----L-PAD--RESLFRLNVDEIPPKSK------DDKGPNVLQLALRSRIKLFYRPAGL 147 (235)
T ss_pred ----C-CCC--ceeEEEEEeeecCCCCc------ccCCcceEEEEeeeeeeEEECcccC
Confidence 1 332 22455555555655321 11111 33457888888887653
No 19
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=81.39 E-value=4.6 Score=31.99 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEeeC-----C---CcceEe-e------------CCeeeeCCCCeEEEEEEEe
Q 024590 92 GKQTRSAVRLKNTSKSHVAFKFQTT-----A---PKSCYM-R------------PPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 92 ~k~vss~LtLkN~S~~~VAFKVKTT-----a---Pk~Y~V-R------------Pn~GiL~Pgesi~V~Vtlq 143 (265)
+...+..|+|+|.+++.+-|+|.-. . .+.|.. . |..=.|+||++..|.|++.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~ 79 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTIT 79 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEE
Confidence 3446789999999999999997644 1 122221 1 2222489999999999986
No 20
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=80.48 E-value=15 Score=33.30 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=46.2
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-e-EEEEEeeC-CC---cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-H-VAFKFQTT-AP---KSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~-VAFKVKTT-aP---k~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
.-|.++|. .+.|+.. ....+|+|+|.+++ + +.+..-.. .. .-|.|.|+.--|+||+...|.|...
T Consensus 21 agv~l~~T-RvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 91 (228)
T PRK15208 21 GGVALSST-RVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNI 91 (228)
T ss_pred ccEEeCce-EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEEC
Confidence 34888885 7777753 23479999999864 3 33332212 11 1299999999999999999999874
No 21
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=79.77 E-value=4.6 Score=39.75 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=39.7
Q ss_pred CCCeeEEEEEEEcCCCCeEEEEEeeCCCcc-------eEeeCCe-------ee-------eCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKSHVAFKFQTTAPKS-------CYMRPPG-------GV-------LAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~VAFKVKTTaPk~-------Y~VRPn~-------Gi-------L~Pgesi~V~Vtlq 143 (265)
+|+..+-+++|+|.++++|-.+==+|+.-+ |...|.. |+ |.|||+.+|.|..+
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 688999999999999999988744444433 3344433 22 89999999999986
No 22
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=79.64 E-value=45 Score=30.33 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=45.6
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC--eEEEE-EeeCC---CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS--HVAFK-FQTTA---PKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~--~VAFK-VKTTa---Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
--|.+++. .+.|+.. + ...+|+|.|.+++ .+.+. |.... ..-|.|.|+.--|+||+...|.|...
T Consensus 25 Agi~i~~T-RvIy~~~--~-~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~ 95 (229)
T PRK15195 25 GGIALGAT-RVIYPAD--A-KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYA 95 (229)
T ss_pred eeEEECCe-EEEEeCC--C-ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 45888885 6777643 2 2389999999865 33332 11111 12599999999999999999999884
No 23
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=77.28 E-value=59 Score=29.85 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=46.0
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEee--CCC---cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQT--TAP---KSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKT--TaP---k~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
--+.+++. .+.|+. + ....+|+|.|.+++ ++.-..-. ... .-|.|.|+.--|+||+...|.|...
T Consensus 16 A~v~l~~T-RvIy~~--~-~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~ 86 (239)
T PRK15254 16 AAVNVDRT-RIIMDA--P-QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQV 86 (239)
T ss_pred EeEEECce-EEEEeC--C-CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEc
Confidence 34778884 777774 2 33479999999864 54433221 111 2499999999999999999999874
No 24
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=76.73 E-value=60 Score=29.64 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=65.6
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEE-EE-EeeCCC---cceEeeCCeeeeCCCCeEEEEEEEeccCCC
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVA-FK-FQTTAP---KSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VA-FK-VKTTaP---k~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~ 148 (265)
--|.+++. .+.|+. + .-..+|+|+|.+++ +.. .. |..... .-|.|.|+.--|+||+...+.|.... ..
T Consensus 27 Agi~l~~T-RvIy~~--~-~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~-~~- 100 (228)
T PRK15188 27 GGIALGAT-RVIYPQ--G-SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVG-PS- 100 (228)
T ss_pred ceEEECcE-EEEEcC--C-CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECC-CC-
Confidence 45888885 777765 2 33479999999865 333 22 211111 24999999999999999999998742 11
Q ss_pred CcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 149 NNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 149 ~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
. |.|. ---|-+....+|+..+... ++..=......+|++-|.+..
T Consensus 101 ---l-P~DR--ESlf~lnv~~IP~~~~~~~---~~n~l~ia~r~~IKLFyRP~~ 145 (228)
T PRK15188 101 ---L-PTDR--ESVFYLNSKAIPSVDKNKL---TGNSLQIATQSVIKLFIRPKN 145 (228)
T ss_pred ---C-CCCc--eEEEEEEEEecCCCCcccc---ccceEEEEEeeeEEEEECCcc
Confidence 1 3222 2345555555554221100 000112234677888887654
No 25
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=76.49 E-value=63 Score=29.75 Aligned_cols=113 Identities=8% Similarity=0.122 Sum_probs=67.1
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCC-CeEEEEEeeC--C-C----cceEeeCCeeeeCCCCeEEEEEEEeccC
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTT--A-P----KSCYMRPPGGVLAPGDSIIATVFKFVEA 146 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~-~~VAFKVKTT--a-P----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e~ 146 (265)
--|.+++. .+.|+. +....+|+|+|.++ .++.-..-.. + . .-|.|-|+.--|+||+...|.|.....
T Consensus 37 Agv~l~~T-RvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~- 111 (243)
T PRK15290 37 AGVVIGGT-RVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKG- 111 (243)
T ss_pred EeEEECce-EEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCC-
Confidence 34788885 777774 23347999999986 4555554332 1 1 139999999999999999999997521
Q ss_pred CCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 147 PENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 147 P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
... |.|. ---|-+-...+|+..+. .+ + ..=......+|++-|.+..
T Consensus 112 ---~~L-P~DR--ESlf~lnv~eIPp~~~~-~~--~-n~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 112 ---VSL-PDDR--ESVFWLNIKNIPPSASN-KA--T-NSLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred ---CCC-CCCe--eEEEEEEEEEcCCCCcc-cc--c-ceEEEEEEEeeeEEEeccc
Confidence 011 3222 23455555555542211 00 0 0112334677888887754
No 26
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=75.70 E-value=5.5 Score=29.54 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=33.1
Q ss_pred CCCeeEEEEEEEcCCCCeE-EEEEeeCCCcceE--eeCCe-eeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCY--MRPPG-GVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~V-AFKVKTTaPk~Y~--VRPn~-GiL~Pgesi~V~Vtlq 143 (265)
.|...+-.++|+|..+.++ ..++.-..|.-+. ..|.. +-|.||++..+++.+.
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~ 59 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVT 59 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEE
Confidence 4677888999999987643 3555555688877 55554 3699999999999886
No 27
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=72.44 E-value=42 Score=27.59 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=41.2
Q ss_pred ceEeeCCCCCeeEEEEEEEcCCCCeEEEEEe-----eCCCcc--e-----------------Eee-CCeeeeCCCCeEEE
Q 024590 84 NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQ-----TTAPKS--C-----------------YMR-PPGGVLAPGDSIIA 138 (265)
Q Consensus 84 eL~F~~e~~k~vss~LtLkN~S~~~VAFKVK-----TTaPk~--Y-----------------~VR-Pn~GiL~Pgesi~V 138 (265)
...+...+|...+-.|+|+|.+++.+-|+|. |+..+. | .|. |..-.|+|+++..|
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V 97 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTV 97 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEE
Confidence 3444456788888999999999999999975 333332 2 122 22345888888888
Q ss_pred EEEEe
Q 024590 139 TVFKF 143 (265)
Q Consensus 139 ~Vtlq 143 (265)
.+.+.
T Consensus 98 ~~~i~ 102 (121)
T PF06030_consen 98 TFTIK 102 (121)
T ss_pred EEEEE
Confidence 88775
No 28
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=71.82 E-value=28 Score=26.60 Aligned_cols=52 Identities=31% Similarity=0.484 Sum_probs=40.0
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCcceEee--CCee-eeCCCCeEEEEEEEe
Q 024590 92 GKQTRSAVRLKNTSKSHVA-FKFQTTAPKSCYMR--PPGG-VLAPGDSIIATVFKF 143 (265)
Q Consensus 92 ~k~vss~LtLkN~S~~~VA-FKVKTTaPk~Y~VR--Pn~G-iL~Pgesi~V~Vtlq 143 (265)
+....-.+...|.+..++- |.++-..|+.+.++ |..| .|.||+.+...+.+.
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~ 72 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVE 72 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEE
Confidence 3467789999999998774 88888888887766 5544 899998876666664
No 29
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=70.15 E-value=20 Score=27.91 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=39.4
Q ss_pred CCCeeEEEEEEEcCCCCe--------EEEEEeeCCCc--ceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKSH--------VAFKFQTTAPK--SCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~--------VAFKVKTTaPk--~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
.|+.....++++|+++.+ .|+-|--|.-. .+..+-..+-|.||++..+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 588899999999999987 55666654433 256778889999999999999985
No 30
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=67.12 E-value=40 Score=30.67 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=64.2
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee--CCC----------cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT--TAP----------KSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT--TaP----------k~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
-|.++- ..+.|+. + .-..+|+|.|.++.+ |=|++ ... .-|.|.|+.-.|+||+...+.|...
T Consensus 19 gi~l~~-TRvIy~~--~-~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 19 GIYIYG-TRIIYPA--Q-KKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKL 92 (226)
T ss_pred eEEeCc-eEEEEcC--C-CcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 466665 3666664 2 234799999999886 44443 111 1499999999999999999999974
Q ss_pred ccCCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 144 VEAPENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 144 ~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
.. .. |.|. ---|-+-...+|+..+. .+ ++..=......+|++-|.+..
T Consensus 93 ~~-----~L-P~DR--ESlfwlnv~~IPp~~~~-~~--~~n~L~iairtrIKLfYRP~~ 140 (226)
T PRK15218 93 AN-----NL-PGDR--ESLFYLNVLDIPPNSDE-NK--DKNIIKFALQNRIKLIYRPPG 140 (226)
T ss_pred CC-----CC-Ccce--eEEEEEEEEEcCCCCCC-cC--cCcEEEEEeeeEEEEEEcccc
Confidence 11 11 3221 23455555556653221 00 000112234677788777643
No 31
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=66.06 E-value=41 Score=26.11 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=33.9
Q ss_pred CCCCeeEEEEEEEcCCCCeEE-----EEEeeCCCcceEeeC---------CeeeeCCCCeEEEEEEEec
Q 024590 90 EPGKQTRSAVRLKNTSKSHVA-----FKFQTTAPKSCYMRP---------PGGVLAPGDSIIATVFKFV 144 (265)
Q Consensus 90 e~~k~vss~LtLkN~S~~~VA-----FKVKTTaPk~Y~VRP---------n~GiL~Pgesi~V~Vtlq~ 144 (265)
+.++-+.-.++|+|.+++.+. |++.+..-+.|.... ..+-|.||+++...|...+
T Consensus 33 ~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 33 EGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp --SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 345556789999999998775 788877777776443 4578999999999988853
No 32
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=65.04 E-value=20 Score=28.15 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=36.4
Q ss_pred CCCeeEEEEEEEcCCCCeEE-EEEeeCCCcceE--eeCC-eeeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKSHVA-FKFQTTAPKSCY--MRPP-GGVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~VA-FKVKTTaPk~Y~--VRPn-~GiL~Pgesi~V~Vtlq 143 (265)
.+...+-.+++.|.+..++- |.++-..|+.|. +.|. ...|.|+..+.-.+.+.
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~ 78 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVE 78 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEE
Confidence 35678889999999998775 777776666654 4566 56999999887666654
No 33
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=64.34 E-value=20 Score=35.30 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=43.8
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceE----------------------eeCCeeeeCC
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCY----------------------MRPPGGVLAP 132 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~----------------------VRPn~GiL~P 132 (265)
..+.++-. .-.|.- +++..+-+|+++|.++++|-.+==+|+.-+|. |.|+ +=|.|
T Consensus 247 ~~V~~~v~-~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~P 323 (381)
T PF04744_consen 247 NSVKVKVT-DATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAP 323 (381)
T ss_dssp SSEEEEEE-EEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-T
T ss_pred CceEEEEe-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCC
Confidence 34777773 667765 58889999999999999998774444444442 2232 35899
Q ss_pred CCeEEEEEEEe
Q 024590 133 GDSIIATVFKF 143 (265)
Q Consensus 133 gesi~V~Vtlq 143 (265)
||+.+|+|.++
T Consensus 324 GETrtl~V~a~ 334 (381)
T PF04744_consen 324 GETRTLTVEAQ 334 (381)
T ss_dssp T-EEEEEEEEE
T ss_pred CceEEEEEEee
Confidence 99999999986
No 34
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=63.87 E-value=46 Score=30.62 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=45.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee----CC---CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT----TA---PKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT----Ta---Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
-|.++- ..+.|+. + .-..+|+|.|.++.+ |=|++ .. ..-|.|.|+.--|+|++...|.|...
T Consensus 29 gv~l~~-TRvIy~~--~-~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~ 97 (237)
T PRK15224 29 SVKLGA-TRVIYHA--G-TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT 97 (237)
T ss_pred EEEeCc-eEEEEeC--C-CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEEC
Confidence 455665 3666664 2 234799999998876 66665 11 12399999999999999999999984
No 35
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=61.67 E-value=1.4e+02 Score=27.84 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=45.0
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEee--CC----CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQT--TA----PKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKT--Ta----Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
--|.++- ..+.|+. + ....+|+|.|.++. ++.-..-. .. ..-|.|.|+.--|+||+...|.|...
T Consensus 26 Agi~l~~-TRvIy~e--~-~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~ 97 (257)
T PRK15274 26 SAIVPDR-TRVIFNG--N-ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPL 97 (257)
T ss_pred eeEEeCc-eEEEEeC--C-CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 4466765 4677764 2 23479999999876 54333211 11 11499999999999999999999874
No 36
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=59.57 E-value=1.5e+02 Score=27.48 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=43.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEE--eeCCCc----ceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKF--QTTAPK----SCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKV--KTTaPk----~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
-+.++- ..+.|+. + .-..+|+|+|.++. ++.-.. .....+ -|.|.|+.--|+||+...|.|...
T Consensus 26 gv~l~~-TRVIy~~--~-~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~ 96 (250)
T PRK15285 26 AIAPDR-TRLVFRG--E-DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGM 96 (250)
T ss_pred eEEeCc-cEEEEcC--C-CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 355665 3667764 2 23479999999865 433222 111211 399999999999999999999874
No 37
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=58.70 E-value=61 Score=30.05 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=43.9
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee----CC---CcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT----TA---PKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT----Ta---Pk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
-|.++-. .+.|+. ++ ...+|+|.|.++.+ |-|++ .. ..-|.|.|+.--|+|++...|.|...
T Consensus 41 gi~l~~T-RvIy~~--~~-~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~ 109 (246)
T PRK15233 41 GLRLGTT-RVIYKE--DA-PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPT 109 (246)
T ss_pred eEEeCce-EEEEeC--CC-cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEEC
Confidence 3555553 555553 32 34799999987776 44544 11 12499999999999999999999984
No 38
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=58.59 E-value=38 Score=25.76 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=31.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceE-eeCCeeeeCCCCeEEEEEEE
Q 024590 96 RSAVRLKNTSKSHVAFKFQTTAPKSCY-MRPPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 96 ss~LtLkN~S~~~VAFKVKTTaPk~Y~-VRPn~GiL~Pgesi~V~Vtl 142 (265)
.-.|+|.|.+...+.|.|...+ |. -.|-.=.|.||++..+.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEee
Confidence 4589999999999999999722 22 33444456678888777766
No 39
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=56.11 E-value=55 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=25.3
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCcceEee-------------------CCeeeeCCCCeEEEEEEE
Q 024590 95 TRSAVRLKNTSKSHVAFKFQTTAPKSCYMR-------------------PPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 95 vss~LtLkN~S~~~VAFKVKTTaPk~Y~VR-------------------Pn~GiL~Pgesi~V~Vtl 142 (265)
+.-.|+|+|.++..|-+.+.|---=-|.|+ --.=.|.||++....+.+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~ 68 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETW 68 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEE
Confidence 456788888888877776654332223333 222346777777777776
No 40
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=53.46 E-value=16 Score=26.29 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=27.4
Q ss_pred EEEEcCCCCeEEEE-EeeCCCcceEeeCCeeeeCCCCeEEEEEE
Q 024590 99 VRLKNTSKSHVAFK-FQTTAPKSCYMRPPGGVLAPGDSIIATVF 141 (265)
Q Consensus 99 LtLkN~S~~~VAFK-VKTTaPk~Y~VRPn~GiL~Pgesi~V~Vt 141 (265)
|+++|+|.-+|.|- ++....++=.--...+.|+|.++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999999886 55554443333344459999999887544
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=53.18 E-value=46 Score=25.78 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=35.2
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
..++|+ .+..+ .|+.+ .|+++|.+...-.|-+.. +.+. ..|.||++..++++-.
T Consensus 30 ~~f~P~-~i~v~--~G~~v--~l~~~N~~~~~h~~~i~~-----~~~~---~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 30 FGFSPS-TITVK--AGQPV--TLTFTNNDSRPHEFVIPD-----LGIS---KVLPPGETATVTFTPL 83 (104)
T ss_dssp EEEES--EEEEE--TTCEE--EEEEEE-SSS-EEEEEGG-----GTEE---EEE-TT-EEEEEEEE-
T ss_pred CeEecC-EEEEc--CCCeE--EEEEEECCCCcEEEEECC-----CceE---EEECCCCEEEEEEcCC
Confidence 488996 66655 57665 599999999888888776 1111 6799999999988643
No 42
>PHA01327 hypothetical protein
Probab=49.53 E-value=15 Score=25.60 Aligned_cols=14 Identities=36% Similarity=0.990 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHh
Q 024590 244 DEWKERREKYLARQ 257 (265)
Q Consensus 244 ~~~~~~r~~~~~~~ 257 (265)
++|.|||+++-.|.
T Consensus 20 e~wqer~drmkkrh 33 (49)
T PHA01327 20 EEWQERKDRMKKRH 33 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999998753
No 43
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=45.99 E-value=20 Score=31.27 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.9
Q ss_pred EEEeeCCCcceEeeCCeee--eCCCCeEEEEEEEe
Q 024590 111 FKFQTTAPKSCYMRPPGGV--LAPGDSIIATVFKF 143 (265)
Q Consensus 111 FKVKTTaPk~Y~VRPn~Gi--L~Pgesi~V~Vtlq 143 (265)
|+|.-=+-+.|++.|.-|+ |+||+++.|.+.-.
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~ 103 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGE 103 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEE
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEcc
Confidence 8999889999999999998 89999999999864
No 44
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=45.05 E-value=1.2e+02 Score=27.90 Aligned_cols=85 Identities=12% Similarity=0.180 Sum_probs=57.5
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee---CCC---------------cceEeeCCeeeeCCCCeE
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT---TAP---------------KSCYMRPPGGVLAPGDSI 136 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT---TaP---------------k~Y~VRPn~GiL~Pgesi 136 (265)
--|.|.|- .+.+.. +.+....++|.|.++++..++|.. ++| ..-.+-|+.-+|.||++.
T Consensus 16 a~l~V~Pi-~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q 92 (234)
T PRK15308 16 ANMLVYPM-AAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTR 92 (234)
T ss_pred ceEEEEEe-EEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeE
Confidence 34788995 666543 334458999999999988777542 122 236788999999999999
Q ss_pred EEEEEEeccCCCCcCCCCCCCCCCCeEEEEEEEeCCC
Q 024590 137 IATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173 (265)
Q Consensus 137 ~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~ 173 (265)
.|.+.... + + ..-.-|-|...+++..
T Consensus 93 ~IRli~lg--~------~---~kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 93 TVRVISLQ--A------P---EREEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEcC--C------C---CcEEEEEEEEEecCCc
Confidence 99988742 1 1 1223466666666654
No 45
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=42.29 E-value=40 Score=26.39 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=33.2
Q ss_pred eEEEEEEEcCCCCeE-----EEEEe-------------eCCCcceEeeCCe--eeeCCCCeEEEEEEEe
Q 024590 95 TRSAVRLKNTSKSHV-----AFKFQ-------------TTAPKSCYMRPPG--GVLAPGDSIIATVFKF 143 (265)
Q Consensus 95 vss~LtLkN~S~~~V-----AFKVK-------------TTaPk~Y~VRPn~--GiL~Pgesi~V~Vtlq 143 (265)
-...|+|+|.++..+ .|.+. +..-..|.|+|.. +.|+||+++.+-+...
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~ 83 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQAS 83 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEe
Confidence 345788888877654 33322 1123578888765 7999999998877764
No 46
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=41.44 E-value=2.3e+02 Score=24.34 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=34.5
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCC-CcceEee--CCeeeeCCCCeEEEEEEE
Q 024590 93 KQTRSAVRLKNTSKSHV-AFKFQTTA-PKSCYMR--PPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 93 k~vss~LtLkN~S~~~V-AFKVKTTa-Pk~Y~VR--Pn~GiL~Pgesi~V~Vtl 142 (265)
..+.-.|+++|.++..+ --+|.... +.--+|+ |..+.|.||+++.+.+-.
T Consensus 85 ~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 46677899999999855 23344333 2233444 888999999998877765
No 47
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=40.60 E-value=3e+02 Score=25.36 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=45.5
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee--CC------C----cceEeeCCeeeeCCCCeEEEEEEE
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT--TA------P----KSCYMRPPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT--Ta------P----k~Y~VRPn~GiL~Pgesi~V~Vtl 142 (265)
.-|.++- ..+.|+. + ....+|+|.|.++.+ |=|++ .. | .-|.|.|+.--|+|++...|.|..
T Consensus 33 Agv~l~~-TRvIy~~--~-~k~~sv~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~ 106 (242)
T PRK15253 33 AGIVIYG-TRVIYPA--E-KKEVVVQLVNQGEQA--SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKK 106 (242)
T ss_pred eeEEeCc-eEEEEeC--C-CceEEEEEEcCCCCc--EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEE
Confidence 4566775 4677764 2 234799999999875 44443 11 1 249999999999999999999986
Q ss_pred e
Q 024590 143 F 143 (265)
Q Consensus 143 q 143 (265)
.
T Consensus 107 ~ 107 (242)
T PRK15253 107 M 107 (242)
T ss_pred C
Confidence 4
No 48
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=39.81 E-value=2.3e+02 Score=28.45 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=47.0
Q ss_pred cEEeeCCCc-eEeeCCCCC-eeEEEEEEEcCCCCeEEEEEeeCCCcceEee-C-CeeeeCCCCeEEEEEEEec
Q 024590 76 RLRLDPSNN-LYFPYEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYMR-P-PGGVLAPGDSIIATVFKFV 144 (265)
Q Consensus 76 ~L~ldP~~e-L~F~~e~~k-~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VR-P-n~GiL~Pgesi~V~Vtlq~ 144 (265)
.|.|..... |+...+.|. .-..+++|.|++.++..|.++........+. + +.=.|+||+..++.|++..
T Consensus 327 ~~~v~r~r~~l~~~~~~g~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 327 DLNVLRDRNLLYVRNSDGVVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEecCCcceEECCCCcEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEe
Confidence 455555433 444444443 5569999999999988888886654444333 2 2347999999999888863
No 49
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=37.54 E-value=1.6e+02 Score=22.88 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCeeEEEEEEEcCCCCe--EEEEEeeCCCcceEeeCC-----eeeeCCCCeEEEEEEE
Q 024590 92 GKQTRSAVRLKNTSKSH--VAFKFQTTAPKSCYMRPP-----GGVLAPGDSIIATVFK 142 (265)
Q Consensus 92 ~k~vss~LtLkN~S~~~--VAFKVKTTaPk~Y~VRPn-----~GiL~Pgesi~V~Vtl 142 (265)
+......+.|+|.++.+ +.||+-==..+-+-|.|. .=.|.+++++.|.-+.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~a 80 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAVA 80 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEEC
Confidence 66778999999999875 788887667777778777 4467788877775554
No 50
>PF13205 Big_5: Bacterial Ig-like domain
Probab=35.65 E-value=1.7e+02 Score=21.95 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=35.3
Q ss_pred ceEeeCCCCC-eeEEEEEEEc--CCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEE
Q 024590 84 NLYFPYEPGK-QTRSAVRLKN--TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 84 eL~F~~e~~k-~vss~LtLkN--~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtl 142 (265)
.|.|.-+... .....+.+.+ ....+|.+. ....+.+.++|. +-|.+|....|+|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 5566555432 3345556644 334455555 344488999998 667899999998854
No 51
>smart00637 CBD_II CBD_II domain.
Probab=35.35 E-value=1.6e+02 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.6
Q ss_pred cceEeeCCe--eeeCCCCeEEEEEEE
Q 024590 119 KSCYMRPPG--GVLAPGDSIIATVFK 142 (265)
Q Consensus 119 k~Y~VRPn~--GiL~Pgesi~V~Vtl 142 (265)
..|.++|.. +.|+||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 368888654 899999998876655
No 52
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=34.68 E-value=1.4e+02 Score=21.87 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=34.7
Q ss_pred CCCeeEEEEEEEcCCCC-eEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKS-HVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~-~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
.|+..+-.++|+|.... .=.|+|+-...+...-.-..+-|.||++..+++.+.
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~ 70 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWT 70 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEE
Confidence 47788899999999775 345666533233322233337899999999999885
No 53
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=32.55 E-value=59 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=18.7
Q ss_pred CCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEE
Q 024590 81 PSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKF 113 (265)
Q Consensus 81 P~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKV 113 (265)
+.....|.+ +. +...-++...+...||||+
T Consensus 42 ~~~C~~y~~--~~-i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 42 SGKCYLYNY--GS-ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred CCCEEEEEc--CC-EEEEEEeecCCCeEEEEEC
Confidence 334455554 44 5455556666778999996
No 54
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.19 E-value=2.5e+02 Score=24.71 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=38.9
Q ss_pred CCCeeEEEEEEEcCCCCeEEEEEeeCC----CcceEeeC-----CeeeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKSHVAFKFQTTA----PKSCYMRP-----PGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~VAFKVKTTa----Pk~Y~VRP-----n~GiL~Pgesi~V~Vtlq 143 (265)
.|+.++-.++|.|..+. -||.|+=++ ++.|-+-- ....|+||+.+.-.+++.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~ 96 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVR 96 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEe
Confidence 47889999999999988 789999877 24444321 235688888888777774
No 55
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=30.66 E-value=39 Score=23.11 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHhh
Q 024590 244 DEWKERREKYLARQQ 258 (265)
Q Consensus 244 ~~~~~~r~~~~~~~~ 258 (265)
.+=.|||+++|++|-
T Consensus 14 ~~Q~eRR~~~Le~QK 28 (40)
T PF11538_consen 14 LDQEERRREFLERQK 28 (40)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 345799999999874
No 56
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=30.48 E-value=1.6e+02 Score=25.73 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEE-----------EeeCCCcceEeeCCeee-eCCCCeEEEEE
Q 024590 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFK-----------FQTTAPKSCYMRPPGGV-LAPGDSIIATV 140 (265)
Q Consensus 73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFK-----------VKTTaPk~Y~VRPn~Gi-L~Pgesi~V~V 140 (265)
....+.=+|. .+...+.. ..-+.++-|||+.+..++|- +.|-+.-.|..-+..|+ |.||+--. .|
T Consensus 50 ~dFaIIndPg-~i~~~~~~-g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~-ev 126 (154)
T COG3354 50 TDFAIINDPG-QIPYVGTD-GPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGR-EV 126 (154)
T ss_pred ccEEEecCCC-CCccccCC-CceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceee-EE
Confidence 3445666774 55555432 34568999999999999996 56667777888889999 99999875 45
Q ss_pred EE
Q 024590 141 FK 142 (265)
Q Consensus 141 tl 142 (265)
++
T Consensus 127 ~v 128 (154)
T COG3354 127 TV 128 (154)
T ss_pred Ee
Confidence 54
No 57
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=29.53 E-value=2.1e+02 Score=26.09 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=57.9
Q ss_pred cccchhhhccCCCCCcEEeeCCCceEeeCCCCCee-EEEEEEEcCCCCeEE-EEEeeCCCcceEe----eCCeeeeCCCC
Q 024590 61 KTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQT-RSAVRLKNTSKSHVA-FKFQTTAPKSCYM----RPPGGVLAPGD 134 (265)
Q Consensus 61 ~~~~~~a~~~~p~~~~L~ldP~~eL~F~~e~~k~v-ss~LtLkN~S~~~VA-FKVKTTaPk~Y~V----RPn~GiL~Pge 134 (265)
..++.|+|..+-.+..+.++......|.+.+.... ..+|+|.|...+.|- +.+....++.+.+ +...|-..|..
T Consensus 91 ~a~~lIGk~V~~~~~~~~~~~~~~~~~~~~l~~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G 170 (225)
T PRK06655 91 QASSLVGRGVLVPGDTVLVGTGGTTPFGVELPSAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDG 170 (225)
T ss_pred HHHHhcCCeEEEecceEEecCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCe
Confidence 34667888877778888887644667766655433 589999999888774 7776667777766 34557666666
Q ss_pred eEEEEEEE
Q 024590 135 SIIATVFK 142 (265)
Q Consensus 135 si~V~Vtl 142 (265)
...|.|..
T Consensus 171 ~Yt~~V~A 178 (225)
T PRK06655 171 NYTIKASA 178 (225)
T ss_pred eEEEEEEE
Confidence 67777764
No 58
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=27.80 E-value=2.7e+02 Score=21.23 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=24.0
Q ss_pred eeeeCCCCeEEEEEEEeccCCCCcCCCCCCCCCCCeEEEEE
Q 024590 127 GGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMS 167 (265)
Q Consensus 127 ~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS 167 (265)
...|.||+++.+++.+. .| .-....|+|+|..
T Consensus 54 ~~~~~pg~~~~a~l~l~--~p-------l~~~~gdrfilR~ 85 (97)
T cd04094 54 RDELAPGEEALAQLRLE--EP-------LVALRGDRFILRS 85 (97)
T ss_pred ccccCCCCEEEEEEEEC--Cc-------EeecCCCeEEEee
Confidence 45689999999999985 23 2345679999964
No 59
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=27.50 E-value=85 Score=26.59 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=33.5
Q ss_pred hhhhccCCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEE
Q 024590 65 YVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFK 112 (265)
Q Consensus 65 ~~a~~~~p~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFK 112 (265)
.+|.++-..+-...+.| .++|.+++|.+ .++=|..++.+.+-||
T Consensus 84 alaerlea~gi~~~i~P--~vRF~Ge~gEq--~TlFl~DP~gN~lEfK 127 (138)
T COG3565 84 ALAERLEAAGIPFHIPP--KVRFKGEPGEQ--RTLFLFDPSGNALEFK 127 (138)
T ss_pred HHHHHHHHcCCCcccCc--eEEecCCccce--EEEEEECCCCCeeeee
Confidence 34555554444444555 89999999987 5899999999999998
No 60
>smart00605 CW CW domain.
Probab=26.12 E-value=1.4e+02 Score=22.72 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred CceEeeCCCCCeeEEEEEEEcC-CCCeEEEEEeeCCCc
Q 024590 83 NNLYFPYEPGKQTRSAVRLKNT-SKSHVAFKFQTTAPK 119 (265)
Q Consensus 83 ~eL~F~~e~~k~vss~LtLkN~-S~~~VAFKVKTTaPk 119 (265)
....|.+ +. + ..|+-.+. +...||||+.++.+.
T Consensus 47 ~C~~f~~--~~-~-~~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 47 TCYLFSY--GT-V-LTVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred ceEEEEc--CC-e-EEEEEccCCCCcEEEEEEeCCCCC
Confidence 4555665 32 2 34444444 456899999866544
No 61
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=25.82 E-value=31 Score=22.28 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=5.4
Q ss_pred chhhhHHHHH
Q 024590 242 VIDEWKERRE 251 (265)
Q Consensus 242 ~~~~~~~~r~ 251 (265)
.=+|||.||-
T Consensus 18 LN~eWk~lRi 27 (30)
T PF11616_consen 18 LNEEWKKLRI 27 (30)
T ss_dssp HHHHHHH---
T ss_pred HHHHHHHhcc
Confidence 3479999983
No 62
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=23.33 E-value=43 Score=25.47 Aligned_cols=19 Identities=47% Similarity=0.763 Sum_probs=12.6
Q ss_pred CCCceec--cccchhhhHHHHH
Q 024590 232 TGPRVVG--EGLVIDEWKERRE 251 (265)
Q Consensus 232 ~~~~~~~--e~~~~~~~~~~r~ 251 (265)
.|++.|| |. .||||.++|-
T Consensus 45 lG~r~v~W~~S-EI~~Wi~~~~ 65 (70)
T COG3311 45 LGGRSVAWPES-EIDEWIASRK 65 (70)
T ss_pred cCcccccccHH-HHHHHHHHHH
Confidence 4445443 33 6999999884
No 63
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=22.47 E-value=2.9e+02 Score=24.32 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=46.3
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCCCCCCCeEEEEEEEeCCC
Q 024590 96 RSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173 (265)
Q Consensus 96 ss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~ 173 (265)
+...=|.|-|+.++-|-.-+...+.|.+| +.|.|+|+-.+-|.-+-.. +...-.+..||-+.-..+
T Consensus 19 ~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~-----------eLN~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 19 RFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKE-----------ELNDLERVAVQLIAYKKD 84 (162)
T ss_dssp -EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GG-----------GGGG-SSEEEEEEEE-SS
T ss_pred ceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHH-----------HhhccceeEEEEEEEcCC
Confidence 46778999999999999998888899988 6899999999888765421 122335667777776655
No 64
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=21.73 E-value=2.1e+02 Score=25.88 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=32.9
Q ss_pred CceEeeCCCCCeeEEEEEEEcCCCCeEEEE-EeeCCCcceEeeCCeeeeCCCCeEEEEE
Q 024590 83 NNLYFPYEPGKQTRSAVRLKNTSKSHVAFK-FQTTAPKSCYMRPPGGVLAPGDSIIATV 140 (265)
Q Consensus 83 ~eL~F~~e~~k~vss~LtLkN~S~~~VAFK-VKTTaPk~Y~VRPn~GiL~Pgesi~V~V 140 (265)
..|.|.... ..|+|+|+|..+|.|- ++... +. +. +.|.|.|+++..+.+
T Consensus 148 ~~L~~~~~~-----~~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 148 QQLKWQTAG-----DVITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred hccEEEEcC-----CEEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEc
Confidence 355665422 2499999999999765 55432 22 22 358999999988864
No 65
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.87 E-value=1.9e+02 Score=26.61 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=28.1
Q ss_pred EEEEEcCCCCeEEEE-EeeCCCcceEeeCCeeeeCCCCeEEEEE
Q 024590 98 AVRLKNTSKSHVAFK-FQTTAPKSCYMRPPGGVLAPGDSIIATV 140 (265)
Q Consensus 98 ~LtLkN~S~~~VAFK-VKTTaPk~Y~VRPn~GiL~Pgesi~V~V 140 (265)
.|+|+|+|..++.|- ++....++ .+....|.|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~~-~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNGA-SYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCCe-ecCCCCceECCCCccEEEc
Confidence 499999999998775 43211221 1222457899999988864
No 66
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=20.15 E-value=1.1e+02 Score=27.30 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.6
Q ss_pred CeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 107 SHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 107 ~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
++|+||+ |...-|+||+++++.+...
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 5888887 8889999999999998864
Done!