Query 024590
Match_columns 265
No_of_seqs 177 out of 627
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 1.9E-34 6.4E-39 241.5 17.6 125 73-203 11-135 (147)
2 1z9l_A Vesicle-associated memb 100.0 9.7E-34 3.3E-38 231.3 17.6 121 73-199 7-127 (128)
3 1wic_A Hypothetical protein ri 100.0 1.4E-33 4.8E-38 238.0 14.0 127 73-208 15-146 (152)
4 1msp_A MSP, major sperm protei 100.0 2.6E-30 8.8E-35 211.7 16.9 118 74-199 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 3.2E-27 1.1E-31 189.8 14.1 104 77-197 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 3E-26 1E-30 186.4 15.4 105 76-197 10-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.2 1.3E-05 4.6E-10 63.6 10.0 65 75-143 24-89 (122)
8 2e6j_A Hydin protein; PAPD, st 97.9 5.5E-05 1.9E-09 58.3 8.1 68 75-143 8-79 (112)
9 3qbt_B Inositol polyphosphate 97.8 0.00013 4.3E-09 60.0 9.8 69 75-144 25-100 (140)
10 3qis_A Inositol polyphosphate 97.3 0.0012 3.9E-08 62.0 9.8 69 75-144 28-103 (366)
11 2qsv_A Uncharacterized protein 96.1 0.023 8E-07 49.1 9.0 65 77-143 3-68 (220)
12 2qsv_A Uncharacterized protein 94.8 0.12 4E-06 44.6 8.8 66 75-143 118-184 (220)
13 3q48_A Chaperone CUPB2; IG fol 91.4 3.9 0.00013 36.5 13.4 110 76-202 29-148 (257)
14 2xg5_A PAPD, chaperone protein 86.1 16 0.00055 31.5 14.2 109 77-201 2-118 (218)
15 2co7_B SAFB chaperone, putativ 85.7 5 0.00017 34.8 9.7 112 77-202 14-134 (221)
16 1klf_A FIMC chaperone, chapero 81.8 24 0.00081 30.2 13.2 111 77-202 2-119 (205)
17 1l4i_A SFAE protein; periplasm 81.5 24 0.00083 30.1 13.2 111 77-202 2-119 (206)
18 4djm_A DRAB; chaperone, PILI; 81.2 8.2 0.00028 34.0 9.3 64 76-143 23-91 (239)
19 3rfr_A PMOB; membrane, oxidore 76.1 7.1 0.00024 37.4 7.7 65 75-143 282-367 (419)
20 2r39_A FIXG-related protein; s 76.0 10 0.00035 29.3 7.5 61 84-144 21-83 (118)
21 3jt0_A Lamin-B1; structural ge 75.8 6.9 0.00024 32.2 6.7 41 98-138 39-84 (144)
22 4ay0_A Chaperone protein CAF1M 73.2 45 0.0015 28.8 14.4 110 76-202 13-129 (218)
23 1yew_A Particulate methane mon 67.0 16 0.00055 34.7 7.7 69 73-143 246-335 (382)
24 3gfu_C Chaperone protein FAEE; 63.1 76 0.0026 27.6 14.8 106 77-201 2-114 (224)
25 2g30_A AP-2 complex subunit be 62.3 9.8 0.00034 33.9 5.2 64 74-143 41-110 (258)
26 3idu_A Uncharacterized protein 60.6 22 0.00075 28.3 6.5 52 91-143 31-83 (127)
27 3hs8_A Adaptor protein complex 58.1 18 0.00062 32.5 6.2 57 92-148 67-130 (273)
28 2lll_A Lamin-B2; immunoglobuli 46.9 24 0.00083 28.7 4.7 41 98-138 35-81 (139)
29 3mnm_A ADP-ribosylation factor 36.1 1.5E+02 0.0053 23.1 8.1 50 93-142 31-86 (123)
30 3e38_A Two-domain protein cont 34.3 56 0.0019 30.0 5.6 65 97-173 270-334 (343)
31 3vta_A Cucumisin; subtilisin-l 32.9 1.4E+02 0.0048 29.2 8.5 50 94-143 538-590 (621)
32 3hn9_A Lamin-B1; structural ge 30.4 60 0.0021 25.6 4.5 40 98-138 26-71 (123)
33 1xi4_J LCA, clathrin light cha 30.0 28 0.00095 25.4 2.2 19 238-256 6-24 (70)
34 1e1h_A BONT/A LC, botulinum ne 25.8 31 0.0011 31.4 2.2 71 48-122 9-87 (287)
35 3zy7_A AP-1 complex subunit ga 25.1 77 0.0026 24.7 4.2 49 68-116 51-99 (122)
36 4gio_A Putative lipoprotein; u 24.5 1.5E+02 0.0052 22.7 5.7 51 92-142 35-91 (107)
37 2huh_A Putative DNA mismatch r 24.4 2.4E+02 0.0082 23.2 7.2 66 96-173 29-94 (147)
38 2xzz_A Protein-glutamine gamma 23.3 2.4E+02 0.0083 21.2 7.5 52 91-143 18-72 (102)
39 3zy7_A AP-1 complex subunit ga 23.2 2.6E+02 0.009 21.6 9.9 67 94-169 30-102 (122)
40 1ifr_A Lamin A/C; immunoglobul 22.9 85 0.0029 24.7 4.0 41 98-138 20-66 (121)
41 2ccw_A Azurin II, AZN-2; elect 21.9 79 0.0027 24.8 3.7 63 76-142 12-99 (129)
42 1gyu_A Adapter-related protein 21.1 3.2E+02 0.011 21.7 8.1 43 93-135 47-93 (140)
43 4hci_A Cupredoxin 1; structura 20.8 2.4E+02 0.0081 20.2 6.6 53 77-142 23-75 (100)
44 2iaa_C Azurin; quinoprotein, t 20.7 1E+02 0.0034 24.2 4.1 63 76-142 11-98 (128)
45 3o0l_A Uncharacterized protein 20.6 1.7E+02 0.0058 22.6 5.3 52 91-142 36-94 (112)
46 1cuo_A Protein (azurin ISO-2); 20.4 59 0.002 25.6 2.6 62 76-142 12-99 (129)
47 3ay2_A Lipid modified azurin p 20.2 59 0.002 27.0 2.7 63 76-142 52-138 (167)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=241.46 Aligned_cols=125 Identities=28% Similarity=0.443 Sum_probs=113.5
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCC
Q 024590 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (265)
Q Consensus 73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~ 152 (265)
++++|.|+|.++|.|++++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|+++ |+..
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~---~~~~-- 85 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ---PFDY-- 85 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEEC---CCCC--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEEC---CCcC--
Confidence 45789999988999999999999999999999999999999999999999999999999999999999996 4322
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCCC
Q 024590 153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAER 203 (265)
Q Consensus 153 pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~~ 203 (265)
.++.+|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..
T Consensus 86 -~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~ 135 (147)
T 2cri_A 86 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNE 135 (147)
T ss_dssp -CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCC
T ss_pred -CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCC
Confidence 23578999999999999988777899999998888999999999987654
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=9.7e-34 Score=231.33 Aligned_cols=121 Identities=30% Similarity=0.460 Sum_probs=110.5
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCC
Q 024590 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (265)
Q Consensus 73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~ 152 (265)
++++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|+++ |+..
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~---~~~~-- 81 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ---PFDY-- 81 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC---CCCC--
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC---cCcC--
Confidence 45789999988999999999999999999999999999999999999999999999999999999999996 4322
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEe
Q 024590 153 QPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFL 199 (265)
Q Consensus 153 pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv 199 (265)
.++.+|+|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus 82 -~p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 82 -DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp -CTTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred -CcccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 2346899999999999999877789999999888899999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=1.4e-33 Score=238.05 Aligned_cols=127 Identities=26% Similarity=0.385 Sum_probs=112.1
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCC
Q 024590 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNER 152 (265)
Q Consensus 73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~ 152 (265)
.+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+ ++ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq---~~-~-- 88 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH---GG-L-- 88 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEEC---SS-S--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEec---Cc-c--
Confidence 45789999988999999999999999999999999999999999999999999999999999999999996 42 1
Q ss_pred CCCCCCCCCeEEEEEEEeC--CCC--CChhhhhhccCCCcceEEEEEEEEecCC-CCChHH
Q 024590 153 QPLDQKSKDKFKIMSLKVK--GGI--DYVPELFDEQKDQVTVERILRVVFLNAE-RPSPAL 208 (265)
Q Consensus 153 pp~~~~~kDKFLVqS~~v~--~~~--d~~~elFk~~~~~~i~e~kLrV~fv~p~-~pSp~~ 208 (265)
+..++|||+||++.++ ++. +++.++|++..+..++++||||+|+++. |+|+++
T Consensus 89 ---~~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~ 146 (152)
T 1wic_A 89 ---TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML 146 (152)
T ss_dssp ---CCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred ---cCCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccc
Confidence 1378999999999998 443 4678999999888899999999999765 555554
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=2.6e-30 Score=211.68 Aligned_cols=118 Identities=17% Similarity=0.290 Sum_probs=100.6
Q ss_pred CCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCC
Q 024590 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQ 153 (265)
Q Consensus 74 ~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~p 153 (265)
...|.++|.++|.|++++++++++.|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+|+ ++...
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q---~~~~~-- 80 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCD---TFNAA-- 80 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEEC---CCCGG--
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEec---CCCCC--
Confidence 3469999999999999999999999999999999999999999999999999999999999999999997 33322
Q ss_pred CCCCCCCCeEEEEEEEeCCCC--CChhhhhhccCCCcceEEEEEEEEe
Q 024590 154 PLDQKSKDKFKIMSLKVKGGI--DYVPELFDEQKDQVTVERILRVVFL 199 (265)
Q Consensus 154 p~~~~~kDKFLVqS~~v~~~~--d~~~elFk~~~~~~i~e~kLrV~fv 199 (265)
|. ...+|||+|||+.++++. |+..+||. .++ .+..++|+|.|-
T Consensus 81 ~~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~-~d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 81 TE-DLNNDRITIEWTNTPDGAAKQFRREWFQ-GDG-MVRRKNLPIEYN 125 (126)
T ss_dssp GS-CCSSCEEEEEEEECCTTCCSSCCTHHHH-SSS-CCEEEEEEEEEE
T ss_pred CC-ccCCCEEEEEEEECCCCcchhhhHHhhc-CCC-ceEEEEEEEEec
Confidence 22 245999999999999885 45555554 333 478999999985
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=3.2e-27 Score=189.81 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=91.0
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLD 156 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~ 156 (265)
|.|+|. +|.|.++.+ ++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+++ |+
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q---~~-------- 67 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRT---AG-------- 67 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEEC---SC--------
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeC---CC--------
Confidence 899996 699998743 699999999999999999999999999999999999999999999996 32
Q ss_pred CCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024590 157 QKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV 197 (265)
Q Consensus 157 ~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~ 197 (265)
..++|||+||++.++++..+..++|++... ..+.+|++.
T Consensus 68 ~~~~dKflvq~~~~~~~~~d~~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 68 APKEDKLVVHFASAPADATDAQAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp CCEEEEEEEEEEECCTTCSCHHHHHTTCCC--CEEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHhhcCCC--CceEEEEEE
Confidence 247999999999999887778999998655 356677664
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=3e-26 Score=186.36 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=92.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCC
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPL 155 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~ 155 (265)
++.++|. +|.|+++.| ++.|+|+|+++.+||||||||+|++|||||++|+|+||++++|.|+++ |+ +
T Consensus 10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q---~~-----~- 76 (116)
T 1m1s_A 10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRL---PG-----P- 76 (116)
T ss_dssp SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEEC---SC-----C-
T ss_pred eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeC---CC-----C-
Confidence 4889995 999998743 799999999999999999999999999999999999999999999996 42 1
Q ss_pred CCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEE
Q 024590 156 DQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVV 197 (265)
Q Consensus 156 ~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~ 197 (265)
.++|||+||++.++++..+..++|++..+ ..+.+|++.
T Consensus 77 --~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 77 --PKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp --SCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred --CCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 47899999999999877678999998655 477888764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=1.3e-05 Score=63.57 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=55.1
Q ss_pred CcEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e-~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
..|.+ | +.|.|..- .+...+..|.|+|+++.++.|++++.+ -|.|.|+.|.|.||+++.|.|+..
T Consensus 24 ~~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F~ 89 (122)
T 2ys4_A 24 AILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEFE 89 (122)
T ss_dssp CCCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEEC
T ss_pred cEECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEEE
Confidence 34555 5 58888663 466778999999999999999999854 699999999999999999999995
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=5.5e-05 Score=58.28 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=56.9
Q ss_pred CcEEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCC-C--cceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTA-P--KSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e-~~k~vss~LtLkN~S~~~VAFKVKTTa-P--k~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
..+.+++. .|.|-.- .+...+..++|+|+++-++-|++.... . ..|.+.|+.|.|.||++..|.|++.
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~ 79 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFS 79 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEEC
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEE
Confidence 45888884 7888653 577788999999999999999996422 1 5699999999999999999999995
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.79 E-value=0.00013 Score=60.02 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=58.0
Q ss_pred CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeC------CCcceEeeCCeeeeCCCCeEEEEEEEec
Q 024590 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATVFKFV 144 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~-e~~k~vss~LtLkN~S~~~VAFKVKTT------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~ 144 (265)
..+.+++ ..|.|-. .++...+.+|+|+|++.-+.-|++.-. .+.-+.|.|..|.|.||+++.|.|++..
T Consensus 25 P~i~v~~-~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESC-CEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeee-eeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 4577888 5999874 467788999999999999999999853 2345889999999999999999999863
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.25 E-value=0.0012 Score=61.99 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=57.7
Q ss_pred CcEEeeCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEeeCCCc-c-----eEeeCCeeeeCCCCeEEEEEEEec
Q 024590 75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAPK-S-----CYMRPPGGVLAPGDSIIATVFKFV 144 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~-e~~k~vss~LtLkN~S~~~VAFKVKTTaPk-~-----Y~VRPn~GiL~Pgesi~V~Vtlq~ 144 (265)
..+.|++ ..|.|-. .++...+.+|+|+|++.-++.|+|.....+ . +.|.|..|.|.||+++.|.|++..
T Consensus 28 P~v~v~~-~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 28 PSLELSR-REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CCEEESC-SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEEec-CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 5578888 4999954 578889999999999999999999854222 2 669999999999999999999964
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.13 E-value=0.023 Score=49.12 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=55.9
Q ss_pred EEeeCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 77 LRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 77 L~ldP~~eL~F~~e-~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
|++++ +.+.|..- .|......++++|+++.++-++.-.. |..+.+++..+.|+||++..|.|++.
T Consensus 3 i~~~~-~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~ 68 (220)
T 2qsv_A 3 LQVSN-ARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLA 68 (220)
T ss_dssp EEESC-SEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEEC
T ss_pred eEEec-CeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEc
Confidence 88999 59998763 46666789999999999999987644 88888899999999999999999995
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.83 E-value=0.12 Score=44.63 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=55.9
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEE-EEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAF-KVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
..|.++ ..+.|-.-.|...+..++|+|+++.++.+ +|+|+. +...+.++.+.|.||++..|.|++.
T Consensus 118 ~~i~~~--~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 118 GVMELS--TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp CCEECC--CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEEC
T ss_pred CEEEEE--eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEe
Confidence 458888 48888643377888999999999999887 888764 7889999999999999999999995
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=91.45 E-value=3.9 Score=36.45 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=66.7
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----cceEeeCCeeeeCCCCeEEEEEEEecc
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATVFKFVE 145 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTa------P----k~Y~VRPn~GiL~Pgesi~V~Vtlq~e 145 (265)
-|.|+|. .+.|+.. +-..+|+|+|.++.++.-.+-..+ | .-|.|.|+.-.|+||+...|.|.....
T Consensus 29 ~v~i~~T-RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~ 104 (257)
T 3q48_A 29 GLIAQGT-RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA 104 (257)
T ss_dssp --CCSCS-EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC
T ss_pred eEEEcce-EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC
Confidence 4778885 7777753 224799999999987665543221 1 139999999999999999999987421
Q ss_pred CCCCcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 146 APENNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 146 ~P~~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
+ . |.|.. --|-+.-..+|...+. +...=......+|++-|.+..
T Consensus 105 -~----L-P~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 105 -P----L-PTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp -C----C-CSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTT
T ss_pred -C----C-CCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEeccc
Confidence 1 1 33322 3455555555553221 111123345788999888754
No 14
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=86.07 E-value=16 Score=31.53 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=66.0
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeCC-------CcceEeeCCeeeeCCCCeEEEEEEEeccCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKTTa-------Pk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~ 148 (265)
|.+++. .+.|+... -..+|+|+|.++. ++.-.+-... ..-|.|.|+.--|+||+...|.|.....
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~--- 74 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPD--- 74 (218)
T ss_dssp EEESCS-EEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGG---
T ss_pred cEeCce-EEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCC---
Confidence 567774 77777542 3479999999988 7665543321 2249999999999999999999988520
Q ss_pred CcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecC
Q 024590 149 NNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNA 201 (265)
Q Consensus 149 ~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p 201 (265)
.... |.|.. --|-+.-..+|+..+. +. .=......+|++-|.+.
T Consensus 75 ~~~l-P~DrE--Slf~lnv~eIPp~~~~-----~n-~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 75 ISKL-PQDRE--SLFYFNLREIPPRSEK-----AN-VLQIALQTKIKLFYRPA 118 (218)
T ss_dssp GGGS-CSSSC--EEEEEEEEEECCCCCC-----TT-EEEEEEEEEEEEEEECG
T ss_pred CCCC-CCCce--EEEEEEeecCCCCCCC-----Cc-eEEEEehheeeEEEcCc
Confidence 0011 33322 3444444555542211 00 11223467788877664
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=85.68 E-value=5 Score=34.82 Aligned_cols=112 Identities=9% Similarity=0.120 Sum_probs=67.0
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNE 151 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E 151 (265)
|.+++. .+.|+... -..+|+|+|.++.++.-.+-.. ...-|.|.|+.-.|+||+...|.|..... +
T Consensus 14 v~i~~T-RvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~---- 84 (221)
T 2co7_B 14 VKLGAT-RVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-D---- 84 (221)
T ss_dssp CEESCS-EEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-C----
T ss_pred EEEcce-EEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-C----
Confidence 678885 77777543 2379999999988765554321 12349999999999999999999988521 1
Q ss_pred CCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccC----CCcceEEEEEEEEecCC
Q 024590 152 RQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQK----DQVTVERILRVVFLNAE 202 (265)
Q Consensus 152 ~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~----~~~i~e~kLrV~fv~p~ 202 (265)
. |.+.. --|-+.-..+|+..+...+ +... =......+|++-|.+..
T Consensus 85 l-P~DrE--slf~lnv~eIPp~~~~~~~--~~~n~~~~lqia~r~rIKlFyRP~~ 134 (221)
T 2co7_B 85 M-PTDRE--TLQWVCIKAVPPENEPSDT--QAKGATLDLNLSINACDKLIFRPDA 134 (221)
T ss_dssp C-CSSSC--EEEEEEEEEECCC-------------CEEEEEEEEEEEEEEEECTT
T ss_pred C-CCCce--EEEEEEeecCCCCcccccc--cccCcceeEEEEeeeeeeEEEeccc
Confidence 1 33322 3455555555542211000 0000 11234678888887765
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=81.82 E-value=24 Score=30.16 Aligned_cols=111 Identities=10% Similarity=0.114 Sum_probs=67.2
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEEE-eccCCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVFK-FVEAPEN 149 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vtl-q~e~P~~ 149 (265)
|.+++. .+.|+... -..+|+|+|.++. ++.-.+-.. ...-|.|.|+.--|+||+...|.|.. .. .+
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~-- 74 (205)
T 1klf_A 2 VALGAT-RVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQ-- 74 (205)
T ss_dssp EEESCS-EEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SC--
T ss_pred eEecce-EEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CC--
Confidence 567774 77777542 3479999999987 765554321 12349999999999999999999987 52 11
Q ss_pred cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
. |.|.. .-|-+.-..+++..+... ....=......+|++-|.+..
T Consensus 75 --l-P~DrE--slf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~ 119 (205)
T 1klf_A 75 --L-PQDRE--SLFWMNVKAIPSMDKSKL---TENTLQLAIISRIKLYYRPAK 119 (205)
T ss_dssp --S-CSSSC--EEEEEEEEEECCCCTTST---TSCEEEEEEEEEEEEEEECTT
T ss_pred --C-CCCce--EEEEEEeEecCCCCcccc---CCceEEEEeeeeeeEEEcccc
Confidence 1 33322 345555555554221100 000011234678888887755
No 17
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=81.49 E-value=24 Score=30.07 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=66.0
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCC-CeEEEEEeeC-----CCcceEeeCCeeeeCCCCeEEEEEE-EeccCCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSK-SHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATVF-KFVEAPEN 149 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~-~~VAFKVKTT-----aPk~Y~VRPn~GiL~Pgesi~V~Vt-lq~e~P~~ 149 (265)
|.+++. .+.|+... -..+|+|+|.++ .++.-.+-.. ...-|.|.|+.--|+||+...|.|. ... .+
T Consensus 2 v~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~-- 74 (206)
T 1l4i_A 2 VALGAT-RVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQ-- 74 (206)
T ss_dssp EEESCS-EEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TC--
T ss_pred eEeCce-EEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CC--
Confidence 567774 77777532 347999999986 6765554321 1234999999999999999999998 631 11
Q ss_pred cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
. |.|... -|-+.-..+++..+... ....=......+|++-|.+..
T Consensus 75 --l-P~DrEs--lf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 75 --M-PEDRES--LFWVNVKAIPAMDKAKT---GENYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp --S-CSSSCE--EEEEEEEEEECCC-----------CCCEEEEEEEEEEECTT
T ss_pred --C-CCCceE--EEEEEeecCCCCccccc---CCceEEEEhhheeeEEEeccc
Confidence 1 333332 34444444443221100 011123345789999888765
No 18
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=81.23 E-value=8.2 Score=34.04 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=47.2
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEee-----CCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT-----TAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKT-----TaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
-|.|++. .+.|+... -..+|+|+|.++.++.-.+-. ....-|.|.|+.--|+||+...|.|+..
T Consensus 23 ~v~l~~T-RvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~ 91 (239)
T 4djm_A 23 SLHLGAT-RVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRT 91 (239)
T ss_dssp CCEESCS-EEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred eEEEcce-EEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 3788885 77776532 237999999998875544321 1122499999999999999999999874
No 19
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=76.08 E-value=7.1 Score=37.44 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=48.9
Q ss_pred CcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceE--------------------e-eCCeeeeCCC
Q 024590 75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCY--------------------M-RPPGGVLAPG 133 (265)
Q Consensus 75 ~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~--------------------V-RPn~GiL~Pg 133 (265)
..+.++-. .-.|.- +++..+-+|+++|.++++|-+.==+|+.-+|. + .|+ =|.||
T Consensus 282 ~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 282 EQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp CCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 34666663 667765 58889999999999999998875556665554 1 233 59999
Q ss_pred CeEEEEEEEe
Q 024590 134 DSIIATVFKF 143 (265)
Q Consensus 134 esi~V~Vtlq 143 (265)
|+.+|+|.++
T Consensus 358 ETrt~~V~a~ 367 (419)
T 3rfr_A 358 ESKEIVVKIQ 367 (419)
T ss_dssp CEEEEEEEEE
T ss_pred cceEEEEEee
Confidence 9999999987
No 20
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=75.96 E-value=10 Score=29.25 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=43.1
Q ss_pred ceEeeCCCCC-eeEEEEEEEcCCCCeEEEEEeeCCCcceEe-eCCeeeeCCCCeEEEEEEEec
Q 024590 84 NLYFPYEPGK-QTRSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGVLAPGDSIIATVFKFV 144 (265)
Q Consensus 84 eL~F~~e~~k-~vss~LtLkN~S~~~VAFKVKTTaPk~Y~V-RPn~GiL~Pgesi~V~Vtlq~ 144 (265)
.|+-.-..|. .-..+|+|.|++.+...|.|+-....-+.+ .|..=.|.||+...+.|++..
T Consensus 21 ~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~ 83 (118)
T 2r39_A 21 QLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGA 83 (118)
T ss_dssp CCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEE
T ss_pred ceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEE
Confidence 4444434443 456999999999999999998876444554 455456889999888888753
No 21
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=75.79 E-value=6.9 Score=32.24 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCc--ceEeeCCeeeeCCCCeEEE
Q 024590 98 AVRLKNTSKSHVA---FKFQTTAPK--SCYMRPPGGVLAPGDSIIA 138 (265)
Q Consensus 98 ~LtLkN~S~~~VA---FKVKTTaPk--~Y~VRPn~GiL~Pgesi~V 138 (265)
.|+|.|++++.+. |+|+=...+ ..+.=|+.=+|.||.+++|
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 7899999887663 566533222 1233455558999999665
No 22
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=73.19 E-value=45 Score=28.77 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=64.5
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC-------CCcceEeeCCeeeeCCCCeEEEEEEEeccCCC
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-------APKSCYMRPPGGVLAPGDSIIATVFKFVEAPE 148 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT-------aPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~ 148 (265)
-+.|+-. .+.|+... -..+|+|+|.++.++.-..... ...-|.|.|+.--|+||+...|.|..... +
T Consensus 13 gv~l~~T-RvIy~~~~---k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~- 86 (218)
T 4ay0_A 13 GVTIGES-RIIYPLDA---AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-V- 86 (218)
T ss_dssp CEEESCC-EEEEETTC---SCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-C-
T ss_pred eEEECce-EEEECCCC---cEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-C-
Confidence 3677764 77776532 2478999999988765553321 11239999999999999999999987421 1
Q ss_pred CcCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecCC
Q 024590 149 NNERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNAE 202 (265)
Q Consensus 149 ~~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p~ 202 (265)
. |.|. ---|-+.-..+|+..+... ..-......+|++-|.+..
T Consensus 87 ---L-P~DR--ESlf~lnv~eIPp~~~~~~-----n~lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 87 ---F-PRDK--ESLKWLCVKGIPPKDEDIW-----VDVQFAINNCIKLLVRPNE 129 (218)
T ss_dssp ---C-CSSS--CEEEEEEEEEECC-------------------CEEEEEEECTT
T ss_pred ---C-CcCc--EEEEEEEEEecCCCCcccc-----ceeEEEEEEEEEEEEcCcc
Confidence 1 3222 2336666666665321100 0112334678899888754
No 23
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=67.02 E-value=16 Score=34.68 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=51.4
Q ss_pred CCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEe---------eC------------CeeeeC
Q 024590 73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM---------RP------------PGGVLA 131 (265)
Q Consensus 73 ~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~V---------RP------------n~GiL~ 131 (265)
....+.++-. .-.|.- +|+..+-+|+++|.++++|-..==+|+.-+|.- -| +..=|.
T Consensus 246 ~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~ 323 (382)
T 1yew_A 246 PAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLA 323 (382)
T ss_dssp CCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBC
T ss_pred CCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcC
Confidence 4556777774 667764 588999999999999999988855666666632 22 112389
Q ss_pred CCCeEEEEEEEe
Q 024590 132 PGDSIIATVFKF 143 (265)
Q Consensus 132 Pgesi~V~Vtlq 143 (265)
|||+.+|.|..+
T Consensus 324 PGETr~~~v~a~ 335 (382)
T 1yew_A 324 PGETRTVDVTAS 335 (382)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCceeEEEEEee
Confidence 999999999987
No 24
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=63.15 E-value=76 Score=27.59 Aligned_cols=106 Identities=10% Similarity=0.158 Sum_probs=63.5
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEE--EeeCC----CcceEeeCCeeeeCCCCeEEEEEEEeccCCCC
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFK--FQTTA----PKSCYMRPPGGVLAPGDSIIATVFKFVEAPEN 149 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~-~VAFK--VKTTa----Pk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~ 149 (265)
|.++.. .+.|+... -..+|+|+|.++. ++.-. |.... ..-|.|.|+.--|+||+...|.|+.... +
T Consensus 2 ~~l~~T-RvIy~~~~---k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~-- 74 (224)
T 3gfu_C 2 LAVDQT-RYIFRGDK---DALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-H-- 74 (224)
T ss_dssp EECSCS-EEEEETTS---SCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-C--
T ss_pred ccccce-EEEEeCCC---ceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-C--
Confidence 556664 67777532 2379999999876 44322 22211 1239999999999999999999987421 1
Q ss_pred cCCCCCCCCCCCeEEEEEEEeCCCCCChhhhhhccCCCcceEEEEEEEEecC
Q 024590 150 NERQPLDQKSKDKFKIMSLKVKGGIDYVPELFDEQKDQVTVERILRVVFLNA 201 (265)
Q Consensus 150 ~E~pp~~~~~kDKFLVqS~~v~~~~d~~~elFk~~~~~~i~e~kLrV~fv~p 201 (265)
. |.+.. --|-+.-..+|+..+ ...-......+|++-|.+.
T Consensus 75 --L-P~DRE--Slf~lnv~eIPp~~~-------~n~Lqiair~rIKLFyRP~ 114 (224)
T 3gfu_C 75 --L-PKDKE--SVYWLNLQDIPPALE-------GSGIAVALRTKLKLFYRPK 114 (224)
T ss_dssp --C-CSSSC--EEEEEEEEEECCCCS-------SSBCCEEEEEEEEEEEECG
T ss_pred --C-CCCce--EEEEEEeecCCCCCC-------CCeEEEEEEEEeeEEEccc
Confidence 1 33322 334444455554221 1112334577888888764
No 25
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=62.32 E-value=9.8 Score=33.92 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeE-EEEEeeCCCcceEeeCCe-----eeeCCCCeEEEEEEEe
Q 024590 74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMRPPG-----GVLAPGDSIIATVFKF 143 (265)
Q Consensus 74 ~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~V-AFKVKTTaPk~Y~VRPn~-----GiL~Pgesi~V~Vtlq 143 (265)
+.-|.|+= .|... +.++.-.|+|+|.+..++ -|.|+-+ .+.|-+-|.. .-|.||+++++.|-+.
T Consensus 41 g~GLeI~g----~f~r~-~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 41 AKGLEISG----TFTHR-QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTTEEEEE----EEEEE-TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCcEEEEE----EEEEe-CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 45666664 34433 557889999999999864 4555543 4444444432 4499999999998875
No 26
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=60.64 E-value=22 Score=28.33 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=39.8
Q ss_pred CCCeeEEEEEEEcCCCCe-EEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKSH-VAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~-VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
.|+.++-.++++|..... =+|+|+-...+...-.-..+ |+||++..|.+...
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~ 83 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWT 83 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEE
Confidence 588899999999998764 58888866555554333334 99999999998873
No 27
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=58.09 E-value=18 Score=32.45 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=37.2
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCc----ce--EeeCCeeeeCCCCeEEEEEEEeccCCC
Q 024590 92 GKQTRSAVRLKNTSKSHVA-FKFQTTAPK----SC--YMRPPGGVLAPGDSIIATVFKFVEAPE 148 (265)
Q Consensus 92 ~k~vss~LtLkN~S~~~VA-FKVKTTaPk----~Y--~VRPn~GiL~Pgesi~V~Vtlq~e~P~ 148 (265)
+...+-.|.+.|++..++. |++.-..++ .+ .+.|.-..|.|++.+...|.+....|+
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~~pF 130 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDF 130 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCC
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEcccc
Confidence 3366789999999987663 666544443 34 345666899999986655543322454
No 28
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=46.93 E-value=24 Score=28.74 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=27.7
Q ss_pred EEEEEcCCCCeE---EEEEeeCCCc---ceEeeCCeeeeCCCCeEEE
Q 024590 98 AVRLKNTSKSHV---AFKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (265)
Q Consensus 98 ~LtLkN~S~~~V---AFKVKTTaPk---~Y~VRPn~GiL~Pgesi~V 138 (265)
.|+|.|++++.+ .|+|+=...+ .-+.=|+.=+|.||.+++|
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 789999988765 4677754321 2233466678999998654
No 29
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=36.06 E-value=1.5e+02 Score=23.07 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCCC--CeEEEEEEE
Q 024590 93 KQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAPG--DSIIATVFK 142 (265)
Q Consensus 93 k~vss~LtLkN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~Pg--esi~V~Vtl 142 (265)
....-.+...|.+..+| -|.++.-.||.|.++ |.+| .|.|+ ..++=.+.+
T Consensus 31 ~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 31 SVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred CeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 34566788889988766 799999999998766 7777 69998 444433333
No 30
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=34.27 E-value=56 Score=30.04 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=49.2
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCCCCCCCeEEEEEEEeCCC
Q 024590 97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173 (265)
Q Consensus 97 s~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~ 173 (265)
-+|.|+|.|+- -|.++-+.+..|.+.++.=-|+|+++..+.|-.. +. .....-+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFK-----QG-----IKGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEEC-----TT-----CCCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecc-----cc-----ccceEEEEEeeeeeecCC
Confidence 58888898876 5677778999999999999999999999998773 11 123446777776666544
No 31
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=32.92 E-value=1.4e+02 Score=29.21 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=38.8
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCcc--eEeeCCeeee-CCCCeEEEEEEEe
Q 024590 94 QTRSAVRLKNTSKSHVAFKFQTTAPKS--CYMRPPGGVL-APGDSIIATVFKF 143 (265)
Q Consensus 94 ~vss~LtLkN~S~~~VAFKVKTTaPk~--Y~VRPn~GiL-~Pgesi~V~Vtlq 143 (265)
..+-+-+++|.....--|+++.+.|.- -.|.|..=.+ ..||+..++|++.
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~ 590 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR 590 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEE
Confidence 445566899999999999999888875 4567887666 5688888888874
No 32
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=30.45 E-value=60 Score=25.62 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=28.1
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCc---ceEeeCCeeeeCCCCeEEE
Q 024590 98 AVRLKNTSKSHVA---FKFQTTAPK---SCYMRPPGGVLAPGDSIIA 138 (265)
Q Consensus 98 ~LtLkN~S~~~VA---FKVKTTaPk---~Y~VRPn~GiL~Pgesi~V 138 (265)
.|+|.|++++.+. |+++-...+ .|.. |+.=+|.||++++|
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 7899999887664 777744332 3544 55568999999665
No 33
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=30.03 E-value=28 Score=25.39 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.8
Q ss_pred ccccchhhhHHHHHHHHHH
Q 024590 238 GEGLVIDEWKERREKYLAR 256 (265)
Q Consensus 238 ~e~~~~~~~~~~r~~~~~~ 256 (265)
+|.=+|-+|+|+|..-|+.
T Consensus 6 ~EpE~Ir~WRE~~~~~i~e 24 (70)
T 1xi4_J 6 SEPESIRKWREEQTERLEA 24 (70)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 4556999999999998875
No 34
>1e1h_A BONT/A LC, botulinum neurotoxin type A light chain; Zn-endopeptidase, complex, substrate bound, inhibitor bound, hydrolase; 1.80A {Clostridium botulinum} SCOP: d.92.1.7
Probab=25.76 E-value=31 Score=31.42 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=22.4
Q ss_pred CccCCCCCCCCCCcccchhhhccCCCCCcEEeeCCCceEeeCC--C-CCeeEEEEEEEcCCCC--eEEEEEeeC---CCc
Q 024590 48 PHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYE--P-GKQTRSAVRLKNTSKS--HVAFKFQTT---APK 119 (265)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~a~~~~p~~~~L~ldP~~eL~F~~e--~-~k~vss~LtLkN~S~~--~VAFKVKTT---aPk 119 (265)
...--.||-|-++. ...+-++++...+ |..+- +.=.|++. - ++.+ ..|+..|+... .-||||--+ .|+
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~-~~nnfNy~dPVnn~~I-~~~~~p~~~~~~y~KAFkI~~nIWIiPE 84 (287)
T 1e1h_A 9 SGLVPRGSGMKETA-AAKFERQHMDSPD-LGTDD-DDKAMAYKDPVNGVDI-AYIKIPNAGQMQPVKAFKIHNKIWVIPE 84 (287)
T ss_dssp ---------------------------------------CCTTCCCCSSSE-EEEECTTCTTCCCEEEEEEETTEEEEEE
T ss_pred CCccccCCcchhhH-HHHHHHhcCCCCC-cCCcc-cccccccCCCCCCceE-EEEecCCCCCCceeeeEEeeCCeEEccc
Confidence 33445677777665 5566677775444 66665 35567664 2 3333 67777777665 679998754 567
Q ss_pred ceE
Q 024590 120 SCY 122 (265)
Q Consensus 120 ~Y~ 122 (265)
||.
T Consensus 85 Ry~ 87 (287)
T 1e1h_A 85 RDT 87 (287)
T ss_dssp ECC
T ss_pred ccc
Confidence 765
No 35
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=25.15 E-value=77 Score=24.74 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=33.5
Q ss_pred hccCCCCCcEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeC
Q 024590 68 RSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT 116 (265)
Q Consensus 68 ~~~~p~~~~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTT 116 (265)
..-+|..-.|++.|..-=....-.+..++..|+|.|....+|-.|+|-+
T Consensus 51 qaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kls 99 (122)
T 3zy7_A 51 QAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLT 99 (122)
T ss_dssp EEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEEE
T ss_pred EEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEEE
Confidence 3346777889999875333333235679999999999877666666643
No 36
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=24.45 E-value=1.5e+02 Score=22.74 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCC------eeeeCCCCeEEEEEEE
Q 024590 92 GKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPP------GGVLAPGDSIIATVFK 142 (265)
Q Consensus 92 ~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn------~GiL~Pgesi~V~Vtl 142 (265)
+......++|+|.++..+.|||.==..+-+.|.+. .=.|.+++++.|.-+-
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 34556789999999999999998777777888653 2458888888776554
No 37
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=24.43 E-value=2.4e+02 Score=23.19 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEeccCCCCcCCCCCCCCCCCeEEEEEEEeCCC
Q 024590 96 RSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMSLKVKGG 173 (265)
Q Consensus 96 ss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS~~v~~~ 173 (265)
.-.+-|.|.|+..+.|-.-+-..+.+..| ..|+|+|+..+.|.=.-. .+...-.+|.||-+....+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~-----------~eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTK-----------DVLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECG-----------GGGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeCh-----------hHhcCCceEEEEEEEEcCC
Confidence 45778999999999999988877888776 689999999988864432 1234457889998888774
No 38
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=23.31 E-value=2.4e+02 Score=21.24 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCCeeEEEEEEEcCCCC---eEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEEe
Q 024590 91 PGKQTRSAVRLKNTSKS---HVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFKF 143 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~---~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtlq 143 (265)
-++.....++++|+=.. ...|-|--..-.+=... ..|-|.||+++.+++.+.
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~ 72 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFV 72 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEEC
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEe
Confidence 37788999999999775 56788775433222111 147799999999999985
No 39
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=23.19 E-value=2.6e+02 Score=21.59 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=44.3
Q ss_pred eeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCC--CCeEEEEEEEeccCCCCcCCCCCCCCCCCeEEEEE
Q 024590 94 QTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAP--GDSIIATVFKFVEAPENNERQPLDQKSKDKFKIMS 167 (265)
Q Consensus 94 ~vss~LtLkN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~P--gesi~V~Vtlq~e~P~~~E~pp~~~~~kDKFLVqS 167 (265)
...-.++.+|.+..+| -|.++.-.||.|.++ |.+| .|.| +..++=.+.+. .|. ...-+=|+.|.+
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~--n~~-------~~~lklR~klsY 100 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVL--NPQ-------KQQLRMRIKLTF 100 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEE--CTT-------CCCCCEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEE--CCC-------CCCEEEEEEEEE
Confidence 4567788889988766 799999999998766 7776 6888 65555444442 231 123455666655
Q ss_pred EE
Q 024590 168 LK 169 (265)
Q Consensus 168 ~~ 169 (265)
..
T Consensus 101 ~~ 102 (122)
T 3zy7_A 101 NW 102 (122)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 40
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=22.91 E-value=85 Score=24.74 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=27.3
Q ss_pred EEEEEcCCCCeE---EEEEeeC-C--CcceEeeCCeeeeCCCCeEEE
Q 024590 98 AVRLKNTSKSHV---AFKFQTT-A--PKSCYMRPPGGVLAPGDSIIA 138 (265)
Q Consensus 98 ~LtLkN~S~~~V---AFKVKTT-a--Pk~Y~VRPn~GiL~Pgesi~V 138 (265)
.|+|.|++++.+ .|+|+-. . ...-+.=|+.=+|.||.+++|
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 789999988765 3677754 2 222333466678999998653
No 41
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=21.90 E-value=79 Score=24.84 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=37.1
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCe-----EEEEEeeCC-------------C-cceEe--eC----Ceeee
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSH-----VAFKFQTTA-------------P-KSCYM--RP----PGGVL 130 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~-----VAFKVKTTa-------------P-k~Y~V--RP----n~GiL 130 (265)
.+.++|. +|..+. .|+.+ +|+|+|...-+ --|-|-+.+ + ..|.- .+ ...+|
T Consensus 12 ~m~F~p~-~i~V~k-~G~~v--tv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l 87 (129)
T 2ccw_A 12 AMQYNVK-EIVVDK-SCKQF--TMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVI 87 (129)
T ss_dssp TSCBSCS-EEEECT-TCSEE--EEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CccEecc-eEEEec-CCCEE--EEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEE
Confidence 4678885 666533 35544 89999998643 334443322 1 11110 11 24578
Q ss_pred CCCCeEEEEEEE
Q 024590 131 APGDSIIATVFK 142 (265)
Q Consensus 131 ~Pgesi~V~Vtl 142 (265)
.||++..|++..
T Consensus 88 ~pGet~svtf~~ 99 (129)
T 2ccw_A 88 GGGESDSVTFDV 99 (129)
T ss_dssp CTTCEEEEEEEG
T ss_pred CCCCEEEEEEec
Confidence 999999998876
No 42
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=21.06 E-value=3.2e+02 Score=21.74 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=32.0
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCCCcceEee--CCee-eeCCCCe
Q 024590 93 KQTRSAVRLKNTSKSHV-AFKFQTTAPKSCYMR--PPGG-VLAPGDS 135 (265)
Q Consensus 93 k~vss~LtLkN~S~~~V-AFKVKTTaPk~Y~VR--Pn~G-iL~Pges 135 (265)
+...-.++..|.+..+| -|.++.-.||.|.++ |.+| .|.|+..
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~ 93 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNT 93 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGC
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCC
Confidence 34556778899988655 899999999998776 6666 5888443
No 43
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=20.82 E-value=2.4e+02 Score=20.20 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=35.3
Q ss_pred EEeeCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEeeCCCcceEeeCCeeeeCCCCeEEEEEEE
Q 024590 77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATVFK 142 (265)
Q Consensus 77 L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~VAFKVKTTaPk~Y~VRPn~GiL~Pgesi~V~Vtl 142 (265)
..++|. .|..+ .|+.+ .+.++|.....-.|-+....- .+.|.||++..++++.
T Consensus 23 ~~F~P~-~i~v~--~G~tV--~~~~~n~d~~~H~~~~~~~~~--------~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 23 DYFNPN-VITIP--INEST--TLLLKNKGKSEHTFTIKKLGI--------DVVVESGKEKNITVKP 75 (100)
T ss_dssp TEEESS-EEEEC--TTSCE--EEEEEECSSSCEEEEEGGGTE--------EEEECTTCEEEEEECC
T ss_pred CEEeCC-EEEEC--CCCEE--EEEEEcCCCceEEEEEecCCc--------ceeecCCcceeEEEec
Confidence 357885 66654 56654 677789877666676643221 3568999998887764
No 44
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=20.65 E-value=1e+02 Score=24.23 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=37.1
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCe-----EEEEEeeCC-------------C-cceEe--eC----Ceeee
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSH-----VAFKFQTTA-------------P-KSCYM--RP----PGGVL 130 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~-----VAFKVKTTa-------------P-k~Y~V--RP----n~GiL 130 (265)
.++++|. +|..+. .|+. -+|+|+|...-+ --|-|-+.+ + ..|.- .+ ..++|
T Consensus 11 ~m~F~p~-~i~V~k-~G~~--vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 11 SMQFNTK-SIVVDK-TCKE--FTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TSCBSCS-EEEECT-TCSE--EEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CceEecC-EEEEec-CCcE--EEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 4778885 666633 3554 389999998543 333333321 1 11211 11 24578
Q ss_pred CCCCeEEEEEEE
Q 024590 131 APGDSIIATVFK 142 (265)
Q Consensus 131 ~Pgesi~V~Vtl 142 (265)
.||++..|++..
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999998875
No 45
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=20.65 E-value=1.7e+02 Score=22.58 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=38.6
Q ss_pred CCCeeEEEEEEEcCCCCe--EEEEEeeCCCcceEeeCC-e----eeeCCCCeEEEEEEE
Q 024590 91 PGKQTRSAVRLKNTSKSH--VAFKFQTTAPKSCYMRPP-G----GVLAPGDSIIATVFK 142 (265)
Q Consensus 91 ~~k~vss~LtLkN~S~~~--VAFKVKTTaPk~Y~VRPn-~----GiL~Pgesi~V~Vtl 142 (265)
.+...+..+.|+|.+..+ |.|||-==..+-+-|.|. . =+|.+++++.|.-+.
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 455677999999999886 889987667777777765 1 247888887775554
No 46
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=20.39 E-value=59 Score=25.62 Aligned_cols=62 Identities=6% Similarity=0.126 Sum_probs=36.3
Q ss_pred cEEeeCCCceEeeCCCC-CeeEEEEEEEcCCCCe-----EEEEEeeCCC--------------cceEe--eC----Ceee
Q 024590 76 RLRLDPSNNLYFPYEPG-KQTRSAVRLKNTSKSH-----VAFKFQTTAP--------------KSCYM--RP----PGGV 129 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~-k~vss~LtLkN~S~~~-----VAFKVKTTaP--------------k~Y~V--RP----n~Gi 129 (265)
.+.++|. +|..+ .| +.+ +|+|+|..+-+ --|-|-+... ..|.- .+ ...+
T Consensus 12 ~m~F~p~-~i~V~--~G~~~v--tv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~ 86 (129)
T 1cuo_A 12 TMTYSTR-SISVP--ASCAEF--TVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPI 86 (129)
T ss_dssp SSCCSCS-EEEEE--TTCSEE--EEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCC
T ss_pred CceEccC-eEEEc--CCCeEE--EEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeE
Confidence 4677775 55554 46 554 88999997632 3344433220 01110 11 2357
Q ss_pred eCCCCeEEEEEEE
Q 024590 130 LAPGDSIIATVFK 142 (265)
Q Consensus 130 L~Pgesi~V~Vtl 142 (265)
|.||++..|++..
T Consensus 87 l~pGet~svtf~~ 99 (129)
T 1cuo_A 87 IGGGEKTSVKFKV 99 (129)
T ss_dssp BCTTCEEEEEEEG
T ss_pred ECCCCEEEEEEec
Confidence 9999999998875
No 47
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=20.20 E-value=59 Score=27.03 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=36.3
Q ss_pred cEEeeCCCceEeeCCCCCeeEEEEEEEcCCCCe-----EEEEEeeCC-------------CcceEe--eC----CeeeeC
Q 024590 76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSH-----VAFKFQTTA-------------PKSCYM--RP----PGGVLA 131 (265)
Q Consensus 76 ~L~ldP~~eL~F~~e~~k~vss~LtLkN~S~~~-----VAFKVKTTa-------------Pk~Y~V--RP----n~GiL~ 131 (265)
.+.++|. +|..+ ..|+.+ +|+|+|..+-+ --|-|-+.. ...|.- .+ ..++|.
T Consensus 52 ~m~F~P~-~itV~-kaG~~V--tv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~ 127 (167)
T 3ay2_A 52 NMQFNTK-DIQVS-KACKEF--TITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIG 127 (167)
T ss_dssp TSCBSCS-EEEEE-TTCSSE--EEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecc-eEEEe-cCCCEE--EEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeC
Confidence 4677784 66552 245544 89999997642 334333321 011110 01 245799
Q ss_pred CCCeEEEEEEE
Q 024590 132 PGDSIIATVFK 142 (265)
Q Consensus 132 Pgesi~V~Vtl 142 (265)
||++..|++..
T Consensus 128 pGet~svtf~~ 138 (167)
T 3ay2_A 128 GGEESSLTLDP 138 (167)
T ss_dssp TTCEEEEEECG
T ss_pred CCCEEEEEEec
Confidence 99999998875
Done!