Query 024591
Match_columns 265
No_of_seqs 125 out of 1522
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:50:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0534 NADH-cytochrome b-5 re 100.0 4.6E-43 1E-47 294.5 27.3 227 39-265 47-286 (286)
2 PTZ00319 NADH-cytochrome B5 re 100.0 8.7E-42 1.9E-46 295.3 29.0 241 23-265 11-300 (300)
3 cd06217 FNR_iron_sulfur_bindin 100.0 1.6E-39 3.4E-44 272.6 25.9 218 43-264 1-232 (235)
4 cd06183 cyt_b5_reduct_like Cyt 100.0 1.2E-39 2.5E-44 273.2 24.5 220 46-265 1-234 (234)
5 PRK11872 antC anthranilate dio 100.0 1.8E-39 3.9E-44 285.9 26.6 220 40-264 103-332 (340)
6 cd06210 MMO_FAD_NAD_binding Me 100.0 1.6E-39 3.4E-44 272.9 24.9 218 44-264 2-232 (236)
7 cd06189 flavin_oxioreductase N 100.0 9.9E-40 2.2E-44 272.0 23.2 212 46-264 1-221 (224)
8 cd06184 flavohem_like_fad_nad_ 100.0 4.1E-39 8.9E-44 272.1 26.5 221 40-264 3-240 (247)
9 PRK08051 fre FMN reductase; Va 100.0 1.7E-39 3.6E-44 272.0 22.9 215 43-264 2-226 (232)
10 cd06215 FNR_iron_sulfur_bindin 100.0 5.9E-39 1.3E-43 268.5 25.6 214 47-264 2-228 (231)
11 cd06211 phenol_2-monooxygenase 100.0 4E-39 8.6E-44 270.8 24.6 221 40-264 3-235 (238)
12 PRK13289 bifunctional nitric o 100.0 2E-38 4.3E-43 285.6 29.5 225 36-264 147-389 (399)
13 PTZ00274 cytochrome b5 reducta 100.0 1.2E-38 2.5E-43 277.3 26.9 225 40-265 49-325 (325)
14 PRK07609 CDP-6-deoxy-delta-3,4 100.0 6.7E-39 1.5E-43 282.7 25.2 220 40-264 99-329 (339)
15 cd06209 BenDO_FAD_NAD Benzoate 100.0 1.7E-38 3.6E-43 265.4 25.3 213 45-264 3-224 (228)
16 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 1.1E-38 2.5E-43 282.6 25.7 221 43-264 1-238 (352)
17 cd06191 FNR_iron_sulfur_bindin 100.0 1.5E-38 3.3E-43 266.1 25.0 214 47-264 2-228 (231)
18 cd06216 FNR_iron_sulfur_bindin 100.0 4.9E-38 1.1E-42 265.0 28.1 222 32-264 6-240 (243)
19 cd06188 NADH_quinone_reductase 100.0 6.4E-39 1.4E-43 276.0 21.9 222 40-264 6-280 (283)
20 PLN02252 nitrate reductase [NA 100.0 2.5E-38 5.4E-43 304.4 27.2 227 39-265 630-888 (888)
21 cd06212 monooxygenase_like The 100.0 4.2E-38 9.1E-43 263.6 24.6 215 45-264 2-228 (232)
22 PRK08345 cytochrome-c3 hydroge 100.0 1.7E-38 3.7E-43 273.8 22.7 222 39-264 1-243 (289)
23 PRK10684 HCP oxidoreductase, N 100.0 3.4E-38 7.4E-43 277.2 24.9 217 41-264 7-234 (332)
24 cd06214 PA_degradation_oxidore 100.0 8.1E-38 1.8E-42 263.3 24.8 221 43-264 1-237 (241)
25 cd06213 oxygenase_e_transfer_s 100.0 2.5E-37 5.3E-42 258.1 24.3 211 45-264 2-224 (227)
26 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.7E-37 3.7E-42 261.3 23.2 212 47-264 1-238 (241)
27 COG1018 Hmp Flavodoxin reducta 100.0 7.3E-37 1.6E-41 258.6 26.3 214 40-264 2-227 (266)
28 cd06187 O2ase_reductase_like T 100.0 3E-37 6.5E-42 257.0 23.4 210 48-264 1-221 (224)
29 cd06190 T4MO_e_transfer_like T 100.0 3.4E-37 7.4E-42 258.0 22.9 212 48-264 1-228 (232)
30 PRK08221 anaerobic sulfite red 100.0 3.3E-37 7.1E-42 262.4 22.3 209 44-264 8-223 (263)
31 cd06194 FNR_N-term_Iron_sulfur 100.0 6.4E-37 1.4E-41 254.7 23.5 207 48-264 1-218 (222)
32 cd06196 FNR_like_1 Ferredoxin 100.0 3E-37 6.5E-42 256.1 21.4 204 45-264 2-217 (218)
33 cd06221 sulfite_reductase_like 100.0 4.1E-37 9E-42 260.6 22.2 213 48-264 1-221 (253)
34 cd00322 FNR_like Ferredoxin re 100.0 4.5E-37 9.7E-42 255.4 21.9 209 50-264 2-222 (223)
35 TIGR02911 sulfite_red_B sulfit 100.0 2.1E-36 4.6E-41 257.1 22.8 210 45-265 7-222 (261)
36 PTZ00306 NADH-dependent fumara 100.0 2E-35 4.4E-40 294.3 30.3 243 22-264 893-1160(1167)
37 PRK05464 Na(+)-translocating N 100.0 6.1E-36 1.3E-40 269.5 24.1 222 40-264 130-404 (409)
38 PRK10926 ferredoxin-NADP reduc 100.0 2.3E-35 4.9E-40 249.2 25.8 212 42-259 3-233 (248)
39 PRK05713 hypothetical protein; 100.0 1.6E-35 3.4E-40 258.1 22.1 205 43-264 91-305 (312)
40 TIGR01941 nqrF NADH:ubiquinone 100.0 1.6E-35 3.4E-40 266.5 22.2 222 40-264 126-400 (405)
41 PLN03116 ferredoxin--NADP+ red 100.0 6.9E-35 1.5E-39 253.3 23.8 211 40-254 21-280 (307)
42 COG4097 Predicted ferric reduc 100.0 7.5E-35 1.6E-39 246.9 20.2 206 44-263 216-431 (438)
43 PLN03115 ferredoxin--NADP(+) r 100.0 1.7E-34 3.7E-39 253.9 21.7 208 43-254 90-340 (367)
44 cd06208 CYPOR_like_FNR These f 100.0 3.2E-34 7E-39 247.0 22.7 208 41-254 6-260 (286)
45 cd06198 FNR_like_3 NAD(P) bind 100.0 2.9E-34 6.3E-39 237.8 20.7 198 54-264 5-212 (216)
46 cd06201 SiR_like2 Cytochrome p 100.0 8.2E-34 1.8E-38 244.6 23.0 237 1-254 6-266 (289)
47 cd06185 PDR_like Phthalate dio 100.0 1.1E-33 2.4E-38 233.4 20.8 197 49-264 1-207 (211)
48 cd06219 DHOD_e_trans_like1 FAD 100.0 3.9E-33 8.4E-38 235.7 21.1 198 46-259 1-206 (248)
49 PRK06222 ferredoxin-NADP(+) re 100.0 5E-33 1.1E-37 238.9 20.5 197 46-258 2-206 (281)
50 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.1E-32 2.3E-37 232.7 20.0 196 48-260 1-207 (246)
51 PRK05802 hypothetical protein; 100.0 2.2E-32 4.7E-37 238.0 22.2 215 30-258 51-281 (320)
52 COG0543 UbiB 2-polyprenylpheno 100.0 4.9E-32 1.1E-36 228.8 22.2 203 45-260 9-219 (252)
53 cd06192 DHOD_e_trans_like FAD/ 100.0 4.4E-32 9.4E-37 228.7 20.9 198 48-263 1-207 (243)
54 PRK00054 dihydroorotate dehydr 100.0 5.3E-32 1.1E-36 229.1 21.4 194 42-257 3-205 (250)
55 cd06220 DHOD_e_trans_like2 FAD 100.0 6E-32 1.3E-36 226.4 20.6 190 47-264 2-197 (233)
56 TIGR03224 benzo_boxA benzoyl-C 100.0 1.5E-31 3.1E-36 240.3 20.6 204 42-256 141-386 (411)
57 cd06197 FNR_like_2 FAD/NAD(P) 100.0 1.7E-31 3.7E-36 221.6 18.6 176 50-256 2-213 (220)
58 cd06182 CYPOR_like NADPH cytoc 100.0 4.1E-31 9E-36 225.2 18.4 192 56-255 15-237 (267)
59 cd06200 SiR_like1 Cytochrome p 100.0 8.8E-31 1.9E-35 220.8 18.9 187 57-254 17-224 (245)
60 cd06193 siderophore_interactin 100.0 6E-30 1.3E-34 214.6 16.1 198 48-264 1-230 (235)
61 PRK12778 putative bifunctional 100.0 7.7E-29 1.7E-33 239.0 21.3 197 46-258 2-206 (752)
62 PRK12779 putative bifunctional 100.0 3.5E-28 7.6E-33 237.0 23.6 209 42-259 647-873 (944)
63 COG2871 NqrF Na+-transporting 100.0 8.2E-29 1.8E-33 203.4 14.4 220 40-263 132-404 (410)
64 cd06186 NOX_Duox_like_FAD_NADP 100.0 3.9E-27 8.5E-32 194.2 17.0 181 50-263 3-206 (210)
65 PRK12775 putative trifunctiona 100.0 9.4E-27 2E-31 228.7 22.1 195 46-257 2-205 (1006)
66 PLN02292 ferric-chelate reduct 99.9 2.4E-25 5.3E-30 208.9 21.5 194 44-244 325-548 (702)
67 cd06199 SiR Cytochrome p450- l 99.9 5.9E-26 1.3E-30 201.3 10.2 178 72-254 130-329 (360)
68 cd06207 CyPoR_like NADPH cytoc 99.9 3.7E-25 8.1E-30 197.9 13.1 171 85-258 162-355 (382)
69 cd06206 bifunctional_CYPOR The 99.9 3.9E-25 8.4E-30 197.9 9.5 179 73-259 146-354 (384)
70 TIGR01931 cysJ sulfite reducta 99.9 6.1E-25 1.3E-29 205.9 10.0 176 72-254 367-566 (597)
71 cd06203 methionine_synthase_re 99.9 9.6E-24 2.1E-28 189.5 11.9 166 85-253 172-366 (398)
72 PLN02844 oxidoreductase/ferric 99.9 3.8E-22 8.3E-27 188.0 21.0 190 46-244 314-537 (722)
73 PRK10953 cysJ sulfite reductas 99.9 2E-23 4.3E-28 195.0 11.1 178 72-254 370-569 (600)
74 PLN02631 ferric-chelate reduct 99.9 3.2E-22 7E-27 187.6 19.0 159 45-208 309-491 (699)
75 cd06204 CYPOR NADPH cytochrome 99.9 5.5E-23 1.2E-27 185.5 12.8 166 85-254 176-385 (416)
76 cd06202 Nitric_oxide_synthase 99.9 1.4E-22 2.9E-27 182.4 14.0 165 85-254 175-371 (406)
77 PRK06214 sulfite reductase; Pr 99.9 9.4E-23 2E-27 187.0 13.2 166 85-254 314-499 (530)
78 PF00175 NAD_binding_1: Oxidor 99.9 8.9E-22 1.9E-26 145.4 9.8 107 142-250 1-109 (109)
79 KOG3378 Globins and related he 99.9 2.9E-22 6.2E-27 163.8 7.5 211 39-264 145-377 (385)
80 KOG0039 Ferric reductase, NADH 99.8 1.1E-19 2.4E-24 171.3 17.7 211 44-257 355-633 (646)
81 COG0369 CysJ Sulfite reductase 99.8 1.4E-18 3E-23 160.6 12.6 164 86-254 372-556 (587)
82 PF00970 FAD_binding_6: Oxidor 99.7 1E-16 2.2E-21 116.3 11.3 88 45-132 1-99 (99)
83 KOG1158 NADP/FAD dependent oxi 99.7 5.8E-17 1.3E-21 150.0 10.4 166 85-254 420-614 (645)
84 COG2375 ViuB Siderophore-inter 99.6 1.1E-13 2.5E-18 115.2 18.2 204 39-264 13-253 (265)
85 PF08030 NAD_binding_6: Ferric 99.6 4.1E-15 9E-20 116.7 7.9 116 137-252 1-155 (156)
86 PRK06567 putative bifunctional 99.6 5.4E-14 1.2E-18 135.5 16.5 115 42-163 789-916 (1028)
87 KOG1159 NADP-dependent flavopr 99.5 2E-14 4.4E-19 126.6 7.5 161 85-254 366-544 (574)
88 PF08022 FAD_binding_8: FAD-bi 99.0 3.2E-11 6.9E-16 88.3 -1.5 83 45-129 3-103 (105)
89 PF08021 FAD_binding_9: Sidero 98.8 2.5E-08 5.5E-13 74.2 8.2 84 47-130 1-117 (117)
90 PF04954 SIP: Siderophore-inte 97.9 8.6E-05 1.9E-09 55.4 8.6 110 138-264 2-112 (119)
91 PLN02292 ferric-chelate reduct 84.3 2.1 4.6E-05 41.6 5.6 43 217-263 652-694 (702)
92 PLN02631 ferric-chelate reduct 82.8 2.8 6E-05 40.8 5.7 30 232-263 662-691 (699)
93 PLN02844 oxidoreductase/ferric 80.5 2.2 4.7E-05 41.7 4.2 27 231-257 673-699 (722)
94 PF00667 FAD_binding_1: FAD bi 73.6 8.6 0.00019 31.6 5.4 44 39-84 4-52 (219)
95 PRK09783 copper/silver efflux 70.1 36 0.00077 31.0 9.0 43 40-84 274-319 (409)
96 KOG1611 Predicted short chain- 64.5 26 0.00057 29.2 6.2 55 141-203 6-61 (249)
97 PRK12446 undecaprenyldiphospho 62.3 14 0.00031 32.7 4.8 25 138-162 2-28 (352)
98 PF02662 FlpD: Methyl-viologen 61.7 14 0.00031 27.5 3.9 66 190-264 21-98 (124)
99 PF00677 Lum_binding: Lumazine 57.3 60 0.0013 22.3 8.4 74 45-124 7-83 (85)
100 TIGR03500 FliO_TIGR flagellar 56.1 54 0.0012 21.4 5.7 47 22-68 5-53 (69)
101 COG3967 DltE Short-chain dehyd 55.2 55 0.0012 27.1 6.4 35 137-178 5-39 (245)
102 PF14250 AbrB-like: AbrB-like 52.2 20 0.00043 23.7 2.9 27 99-125 29-63 (71)
103 cd06369 PBP1_GC_C_enterotoxin_ 51.5 37 0.0008 30.5 5.4 60 179-251 167-227 (380)
104 TIGR00999 8a0102 Membrane Fusi 50.9 1.4E+02 0.0031 24.8 8.9 40 43-84 154-196 (265)
105 PRK11556 multidrug efflux syst 49.7 99 0.0021 28.2 8.2 39 44-84 272-313 (415)
106 COG1908 FrhD Coenzyme F420-red 49.5 49 0.0011 24.6 4.9 48 215-264 38-99 (132)
107 KOG3360 Acylphosphatase [Energ 47.5 26 0.00057 24.8 3.1 32 233-264 47-78 (98)
108 PRK15030 multidrug efflux syst 46.6 71 0.0015 28.8 6.7 38 45-84 257-297 (397)
109 PF14221 DUF4330: Domain of un 44.4 1.2E+02 0.0027 23.8 7.0 16 115-130 144-159 (168)
110 PRK06214 sulfite reductase; Pr 44.3 92 0.002 29.5 7.2 43 40-84 165-212 (530)
111 PF13214 DUF4022: Protein of u 42.8 24 0.00052 23.0 2.2 30 1-30 7-36 (83)
112 cd06430 GT8_like_2 GT8_like_2 41.5 2E+02 0.0042 25.2 8.2 63 139-203 2-66 (304)
113 COG1465 Predicted alternative 41.2 1.5E+02 0.0033 25.7 7.3 85 41-129 197-295 (376)
114 cd06303 PBP1_LuxPQ_Quorum_Sens 40.8 2.1E+02 0.0046 23.8 9.3 30 233-263 190-219 (280)
115 PF06925 MGDG_synth: Monogalac 40.1 36 0.00079 26.5 3.4 31 231-265 135-165 (169)
116 TIGR01931 cysJ sulfite reducta 39.2 93 0.002 29.9 6.5 40 43-84 234-278 (597)
117 PRK09859 multidrug efflux syst 38.7 1E+02 0.0022 27.6 6.4 38 45-84 253-293 (385)
118 cd05298 GH4_GlvA_pagL_like Gly 38.7 74 0.0016 29.3 5.5 64 139-206 2-68 (437)
119 PF13344 Hydrolase_6: Haloacid 38.6 10 0.00023 27.0 0.0 82 145-249 12-96 (101)
120 PF02698 DUF218: DUF218 domain 38.4 34 0.00075 26.0 3.0 32 233-264 38-75 (155)
121 cd05197 GH4_glycoside_hydrolas 37.9 53 0.0012 30.1 4.5 64 139-206 2-68 (425)
122 PLN02343 allene oxide cyclase 37.0 63 0.0014 26.1 4.1 44 101-150 112-164 (229)
123 cd06204 CYPOR NADPH cytochrome 36.9 98 0.0021 28.2 6.1 39 44-84 6-48 (416)
124 TIGR00649 MG423 conserved hypo 36.7 3.3E+02 0.0071 24.7 11.6 116 138-264 286-408 (422)
125 PRK09578 periplasmic multidrug 35.3 1.2E+02 0.0025 27.2 6.3 26 57-84 271-296 (385)
126 TIGR01730 RND_mfp RND family e 34.9 2.9E+02 0.0062 23.6 10.3 41 42-84 201-244 (322)
127 cd01391 Periplasmic_Binding_Pr 34.8 2.3E+02 0.005 22.4 10.5 102 151-263 111-212 (269)
128 PF00667 FAD_binding_1: FAD bi 34.8 38 0.00082 27.8 2.8 24 85-108 177-202 (219)
129 PF13460 NAD_binding_10: NADH( 34.4 2.1E+02 0.0046 21.9 8.9 87 141-258 1-91 (183)
130 COG3521 Predicted component of 34.3 2.3E+02 0.0049 22.2 7.3 25 33-57 21-45 (159)
131 PRK08309 short chain dehydroge 34.1 2.3E+02 0.0051 22.3 7.4 31 141-178 3-33 (177)
132 PRK13020 riboflavin synthase s 33.7 2.7E+02 0.0058 22.8 7.7 76 45-126 9-87 (206)
133 COG2130 Putative NADP-dependen 33.5 3.2E+02 0.0069 24.1 8.1 23 72-95 89-111 (340)
134 cd06388 PBP1_iGluR_AMPA_GluR4 33.3 3.5E+02 0.0076 24.1 9.2 33 232-264 178-210 (371)
135 PRK10953 cysJ sulfite reductas 33.3 1.3E+02 0.0028 29.0 6.4 41 42-84 236-281 (600)
136 PRK00811 spermidine synthase; 32.3 2.1E+02 0.0045 24.5 7.1 16 137-152 77-92 (283)
137 cd06341 PBP1_ABC_ligand_bindin 31.5 3.4E+02 0.0073 23.3 9.1 38 222-261 180-217 (341)
138 PRK13606 LPPG:FO 2-phospho-L-l 31.1 62 0.0013 28.2 3.5 22 139-160 2-23 (303)
139 cd06206 bifunctional_CYPOR The 29.6 97 0.0021 27.8 4.8 34 48-84 2-40 (384)
140 PRK09289 riboflavin synthase s 28.9 3.1E+02 0.0067 22.1 7.8 74 45-124 105-181 (194)
141 PRK09289 riboflavin synthase s 28.9 3.1E+02 0.0068 22.1 8.5 75 45-126 9-86 (194)
142 PRK00226 greA transcription el 28.5 83 0.0018 24.4 3.6 61 72-132 84-150 (157)
143 PRK05449 aspartate alpha-decar 28.3 1.5E+02 0.0032 22.3 4.6 81 42-130 9-93 (126)
144 cd06919 Asp_decarbox Aspartate 27.9 1.6E+02 0.0035 21.5 4.6 81 42-130 8-92 (111)
145 KOG3090 Prohibitin-like protei 27.4 3.7E+02 0.008 22.5 7.1 76 11-101 13-96 (290)
146 PF05279 Asp-B-Hydro_N: Aspart 27.1 53 0.0011 27.6 2.4 23 9-31 7-29 (243)
147 PTZ00450 macrophage migration 27.0 85 0.0018 22.9 3.2 23 242-264 75-98 (113)
148 PF02261 Asp_decarbox: Asparta 26.9 1.2E+02 0.0026 22.4 3.9 93 44-144 11-109 (116)
149 PF11325 DUF3127: Domain of un 26.9 1.4E+02 0.0031 20.6 4.1 43 49-91 28-71 (84)
150 PF09345 DUF1987: Domain of un 26.9 2.4E+02 0.0052 20.1 6.9 59 149-208 27-89 (99)
151 PF07423 DUF1510: Protein of u 26.5 66 0.0014 26.6 2.8 28 10-37 13-40 (217)
152 PF02064 MAS20: MAS20 protein 26.3 22 0.00048 26.5 0.0 28 15-44 1-28 (121)
153 PF08877 MepB: MepB protein; 26.2 2.3E+02 0.005 21.1 5.3 47 54-107 14-64 (123)
154 cd01536 PBP1_ABC_sugar_binding 25.8 3.5E+02 0.0077 21.7 7.7 102 152-262 107-209 (267)
155 KOG1159 NADP-dependent flavopr 25.6 97 0.0021 29.0 3.9 43 40-84 193-240 (574)
156 PF02844 GARS_N: Phosphoribosy 25.4 63 0.0014 23.1 2.2 27 232-258 61-88 (100)
157 cd06199 SiR Cytochrome p450- l 24.8 1.2E+02 0.0027 26.9 4.5 35 48-84 2-41 (360)
158 TIGR00715 precor6x_red precorr 24.5 2.9E+02 0.0063 23.4 6.5 32 141-179 3-34 (256)
159 TIGR03759 conj_TIGR03759 integ 24.3 99 0.0022 25.1 3.3 40 223-263 127-166 (200)
160 PF01272 GreA_GreB: Transcript 24.3 43 0.00094 22.4 1.2 57 72-132 4-70 (77)
161 PRK09838 periplasmic copper-bi 24.2 2.9E+02 0.0064 20.3 6.4 22 63-84 78-99 (115)
162 COG0421 SpeE Spermidine syntha 24.1 1.9E+02 0.0042 24.9 5.4 98 138-246 78-197 (282)
163 PLN02741 riboflavin synthase 23.5 4E+02 0.0087 21.6 7.6 75 45-124 106-184 (194)
164 COG0647 NagD Predicted sugar p 23.4 1.7E+02 0.0038 25.0 4.9 89 142-249 19-107 (269)
165 TIGR00223 panD L-aspartate-alp 23.4 2E+02 0.0043 21.5 4.5 81 42-130 9-93 (126)
166 cd05296 GH4_P_beta_glucosidase 23.1 1.8E+02 0.0038 26.7 5.2 64 139-205 2-68 (419)
167 COG0391 Uncharacterized conser 23.1 84 0.0018 27.7 2.9 24 137-160 7-30 (323)
168 TIGR00661 MJ1255 conserved hyp 23.0 1.6E+02 0.0035 25.4 4.9 23 139-161 1-26 (321)
169 cd01527 RHOD_YgaP Member of th 22.8 1.8E+02 0.0039 19.9 4.3 31 231-263 53-83 (99)
170 PRK02290 3-dehydroquinate synt 22.7 3.6E+02 0.0077 24.0 6.7 96 39-145 163-284 (344)
171 PF13458 Peripla_BP_6: Peripla 22.1 4.9E+02 0.011 22.1 9.1 109 141-263 111-221 (343)
172 cd03062 TRX_Fd_Sucrase TRX-lik 22.0 2.1E+02 0.0045 20.1 4.4 15 242-256 21-35 (97)
173 COG5440 Uncharacterized conser 21.7 98 0.0021 24.0 2.7 21 132-152 47-67 (161)
174 PF09413 DUF2007: Domain of un 21.7 1.4E+02 0.0031 19.0 3.3 25 235-259 2-26 (67)
175 PRK12361 hypothetical protein; 21.7 6.8E+02 0.015 23.7 9.0 24 233-256 298-321 (547)
176 PF13454 NAD_binding_9: FAD-NA 21.3 1E+02 0.0022 23.6 2.9 29 142-172 2-31 (156)
177 PF12389 Peptidase_M73: Camely 21.2 2.2E+02 0.0048 23.2 4.8 20 29-48 27-46 (199)
178 COG0707 MurG UDP-N-acetylgluco 21.2 2E+02 0.0044 25.7 5.1 25 139-163 2-28 (357)
179 cd06207 CyPoR_like NADPH cytoc 21.1 1.4E+02 0.0031 26.8 4.2 27 56-84 15-41 (382)
180 PLN02741 riboflavin synthase 21.0 4.5E+02 0.0098 21.2 7.8 76 45-126 9-87 (194)
181 PF01118 Semialdhyde_dh: Semia 20.9 2.1E+02 0.0045 20.7 4.4 26 232-257 66-91 (121)
182 PRK10834 vancomycin high tempe 20.9 98 0.0021 26.0 2.8 31 233-263 82-117 (239)
183 cd06259 YdcF-like YdcF-like. Y 20.3 1E+02 0.0022 23.2 2.7 31 233-263 35-71 (150)
184 PRK11578 macrolide transporter 20.3 6.1E+02 0.013 22.4 8.9 42 41-84 252-298 (370)
185 KOG4169 15-hydroxyprostaglandi 20.0 3.4E+02 0.0074 22.9 5.7 24 137-162 5-28 (261)
No 1
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.6e-43 Score=294.50 Aligned_cols=227 Identities=44% Similarity=0.864 Sum_probs=214.2
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeee-eecCCCCcEEEEEEeccCC--
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIF-VGSHSDGIFFNILYHATCL-- 110 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ys-is~~~~~~~~~~~ik~~~~-- 110 (265)
++..|+.+++++++.++.|+..++|.+|.+++.+.+..|||+.+.. ...|+|| ++++.+.+.+++.||.+.+
T Consensus 47 ~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~ 126 (286)
T KOG0534|consen 47 DPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGK 126 (286)
T ss_pred CCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCc
Confidence 7778999999999999999999999999988899999999999998 7899999 8888778899999999977
Q ss_pred CCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHH
Q 024591 111 LSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEEL 187 (265)
Q Consensus 111 ~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l 187 (265)
+|++ +++||+|+++||.|.+.++++..+++.||||||||||+++++++++....+.+++.|+|++++++|++++++|
T Consensus 127 mS~~l~~LkiGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~te~DILlr~eL 206 (286)
T KOG0534|consen 127 MSQHLDSLKIGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANKTEDDILLREEL 206 (286)
T ss_pred ccHHHhcCCCCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecCCccccchHHHH
Confidence 8988 9999999999999999998877899999999999999999999999987778999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCC-CcEEEEeCCHHHHH-HHHHHHHHCCCCCCCEEeC
Q 024591 188 DGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPAS-DIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 188 ~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~-~~~v~vCGp~~~~~-~~~~~l~~~gv~~~~I~~~ 265 (265)
+.++.++|.||++.++++++...|.+.+|+++++++.+.++.+.+ ++.+++|||++|++ .+...|+++|++++++|+|
T Consensus 207 ~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le~Lg~~~~~vf~f 286 (286)
T KOG0534|consen 207 EELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQGNLEKLGYNEDQVFVF 286 (286)
T ss_pred HHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHHhcCCChHhEEeC
Confidence 999999998899999999999999999999999999999987766 59999999999998 5888889999999999997
No 2
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=8.7e-42 Score=295.33 Aligned_cols=241 Identities=40% Similarity=0.739 Sum_probs=201.4
Q ss_pred HHHHHHhhhhccCCCC--CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---------ceEeeee
Q 024591 23 AIAVGAAYLFSSKKPK--DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---------EIVKMIF 91 (265)
Q Consensus 23 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---------~~~r~ys 91 (265)
++.++-+|+|...+|. +++.|+.++|++++++++++..++|+.+.+.....++||||+.|++ ...|+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS 90 (300)
T PTZ00319 11 GVAAFFAFMFSRSPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYT 90 (300)
T ss_pred hHHHHHHHHhccCCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeec
Confidence 3445667888777764 8999999999999999999999999987654457899999999997 1469999
Q ss_pred -eecCCCCcEEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecCC---------------CCceEE
Q 024591 92 -VGSHSDGIFFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQPG---------------QVRAFG 141 (265)
Q Consensus 92 -is~~~~~~~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~~---------------~~~~~v 141 (265)
++.+.+.+.++|+||.+ |.+|++ +++||+|.++||+|.|.+..+ ..++++
T Consensus 91 ~~s~~~~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~il 170 (300)
T PTZ00319 91 PISSDDEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFA 170 (300)
T ss_pred cCCCcccCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEE
Confidence 66666778999999986 448888 899999999999999876531 125799
Q ss_pred EEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCC-CCCCCCcccCCCH
Q 024591 142 MTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSK 220 (265)
Q Consensus 142 lia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~-~~~~~~~~g~~~~ 220 (265)
||||||||||+++++++++....+..+++|+|++|+.+++++.++|.++. ++++ +++.+.++++ .+.|.+..|++++
T Consensus 171 lIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~~-~~~~~~~~~~~~~~~~~~~G~v~~ 248 (300)
T PTZ00319 171 MIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDPR-FHVWYTLDREATPEWKYGTGYVDE 248 (300)
T ss_pred EEecCcccCHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCCC-EEEEEEECCCCCCCcccccceeCH
Confidence 99999999999999999987643456899999999999999999999954 5666 9999888874 4567788999998
Q ss_pred HHHhhhCCCCC------CCcEEEEeCCHHHHH-HHHHHHHHCCCCCCCEEeC
Q 024591 221 EMIQTHCPAPA------SDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 221 ~~l~~~~~~~~------~~~~v~vCGp~~~~~-~~~~~l~~~gv~~~~I~~~ 265 (265)
+.+++.++... .+..+|+|||+.|++ .+++.|+++|++++|||+|
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~~~ 300 (300)
T PTZ00319 249 EMLRAHLPVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGYTADNMFTF 300 (300)
T ss_pred HHHHhhcCCccccccccCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEEEC
Confidence 88877765321 356899999999999 5789999999999999998
No 3
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=1.6e-39 Score=272.61 Aligned_cols=218 Identities=22% Similarity=0.397 Sum_probs=187.8
Q ss_pred eEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeec-CCCCcEEEEEEeccCC--CCc
Q 024591 43 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGS-HSDGIFFNILYHATCL--LSL 113 (265)
Q Consensus 43 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~-~~~~~~~~~~ik~~~~--~S~ 113 (265)
|++++|++++.+++++.+++|+.++.. ...++||||+.|++ ...|+||+++ +.+.+.++|+|+..++ +|.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~ 79 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGV-PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSP 79 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCC-cCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchH
Confidence 678999999999999999999988754 47899999999997 3459999555 4456789999999855 787
Q ss_pred c----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 114 L----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 114 ~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+ +++||.+.|.||+|.|.+.....+++++||||+||||++++++++++. +...+++++|++|+.+++++.++|.+
T Consensus 80 ~l~~~l~~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~-~~~~~i~l~~~~r~~~~~~~~~el~~ 158 (235)
T cd06217 80 YLHDEVKVGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDL-GWPVPFRLLYSARTAEDVIFRDELEQ 158 (235)
T ss_pred HHHhcCCCCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhc-CCCceEEEEEecCCHHHhhHHHHHHH
Confidence 7 689999999999999987654457999999999999999999999876 34578999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCC-CCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 190 FAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+.+++++ +++..+++++ .+.+.+..|+++++.+++...+ ..+..+|+|||+.|++++++.|+++|+++++||.
T Consensus 159 ~~~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~ 232 (235)
T cd06217 159 LARRHPN-LHVTEALTRAAPADWLGPAGRITADLIAELVPP-LAGRRVYVCGPPAFVEAATRLLLELGVPRDRIRT 232 (235)
T ss_pred HHHHCCC-eEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC-ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEee
Confidence 9998877 9998888876 4567778899998777766443 3567999999999999999999999999999984
No 4
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=1.2e-39 Score=273.16 Aligned_cols=220 Identities=47% Similarity=0.883 Sum_probs=189.3
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeee-eecCCCCcEEEEEEecc--CCCCcc---
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIF-VGSHSDGIFFNILYHAT--CLLSLL--- 114 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ys-is~~~~~~~~~~~ik~~--~~~S~~--- 114 (265)
++|++++++++++..++|+.+.......++||||+.|.+ ...|+|| ++.+.+.+.++|+|+.+ |.+|.+
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhc
Confidence 478999999999999999988754457899999999998 4679999 45555667899999987 337888
Q ss_pred cCCCCEEEEeeeeeeeEecCCCC-ceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHh
Q 024591 115 ISVNSMQSVANIIGRFRYQPGQV-RAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAK 193 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~~~~~~~~~-~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~ 193 (265)
+++||++.++||+|.|.+..... +++|||||||||||+++++++++...+...+++|+|++|+.++.++.++|+++.+.
T Consensus 81 ~~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l~~~~~~ 160 (234)
T cd06183 81 LKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAKK 160 (234)
T ss_pred CCCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhhHHHHHHHHHh
Confidence 78999999999999998765554 79999999999999999999998763345799999999999999999999999988
Q ss_pred CCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCC-CCCCcEEEEeCCHHHHH-HHHHHHHHCCCCCCCEEeC
Q 024591 194 YPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPA-PASDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 194 ~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~~v~vCGp~~~~~-~~~~~l~~~gv~~~~I~~~ 265 (265)
++..+++.++++++++.|.+..|+++++.++..+.. ...+..+|+|||++|++ ++++.|+++|+++++||.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~i~~~ 234 (234)
T cd06183 161 HPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGYKKDNVFKF 234 (234)
T ss_pred CcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEEeC
Confidence 644499999888877778888999998777776643 24567899999999999 9999999999999999998
No 5
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=1.8e-39 Score=285.91 Aligned_cols=220 Identities=17% Similarity=0.254 Sum_probs=189.7
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEeccCC--CCc
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHATCL--LSL 113 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~ 113 (265)
+..+.+++|++++++++++..++|+.+.....+.|+||||+.|++ ..+|+||+++.+ +.+.++|+||.+++ +|.
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~ 182 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSN 182 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCCceeecccCCCCCCCCeEEEEEEECCCCcchh
Confidence 556678999999999999999999987543457899999999998 468999966555 57899999999766 677
Q ss_pred c----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 114 L----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 114 ~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+ +++||+|.|+||+|.|.++. ..++++||||||||||+++++++++..+ ...+++|+|++|+.+|+++.++|++
T Consensus 183 ~L~~~l~~G~~v~i~gP~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~dl~~~~el~~ 260 (340)
T PRK11872 183 YLRERCQVGDEILFEAPLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQG-CSPPVHLYYGVRHAADLCELQRLAA 260 (340)
T ss_pred hHhhCCCCCCEEEEEcCcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcC-CCCcEEEEEecCChHHhccHHHHHH
Confidence 6 78999999999999998764 3479999999999999999999998763 4468999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
|.+++++ ++++.+++++++.|.+..|++.+...+..+. .....||+|||+.|++.++..|+++|+++++||.
T Consensus 261 ~~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~--~~~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~ 332 (340)
T PRK11872 261 YAERLPN-FRYHPVVSKASADWQGKRGYIHEHFDKAQLR--DQAFDMYLCGPPPMVEAVKQWLDEQALENYRLYY 332 (340)
T ss_pred HHHHCCC-cEEEEEEeCCCCcCCCceeeccHHHHHhhcC--cCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 9999998 9999999988788888899998654444443 2356799999999999999999999999999985
No 6
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=1.6e-39 Score=272.87 Aligned_cols=218 Identities=19% Similarity=0.306 Sum_probs=186.1
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCC---CcccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTP---TSVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~ 114 (265)
..++|++++++++++..++|+.+.. .....|+||||+.|++ ..+|+||+++.+ +.+.++|+|+..++ +|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~ 81 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFSTY 81 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCCCCEEEEEEEEcCCCccchh
Confidence 3689999999999999999998764 1347899999999997 468999976655 47899999998744 7777
Q ss_pred ----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHH
Q 024591 115 ----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGF 190 (265)
Q Consensus 115 ----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l 190 (265)
+++||++.|.||+|.|.++....++++||||||||||+++++++++..+ ...+++|+|++|+.+++++.++|+++
T Consensus 82 l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l 160 (236)
T cd06210 82 LETRAKVGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-EPQEARLFFGVNTEAELFYLDELKRL 160 (236)
T ss_pred hhhCcCCCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhhHHHHHHH
Confidence 7899999999999999886555578999999999999999999988763 34789999999999999999999999
Q ss_pred HHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 191 AAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
.+++++ ++++.+++++.+.|.+..|++.. .+.+.+.+......+|+|||+.|++.+++.|+++|+++++||.
T Consensus 161 ~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~-~l~~~l~~~~~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~ 232 (236)
T cd06210 161 ADSLPN-LTVRICVWRPGGEWEGYRGTVVD-ALREDLASSDAKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYL 232 (236)
T ss_pred HHhCCC-eEEEEEEcCCCCCcCCccCcHHH-HHHHhhcccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeee
Confidence 999888 99999998876667778888875 4555444333456899999999999999999999999999984
No 7
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=9.9e-40 Score=272.03 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=184.0
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc----cC
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL----IS 116 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~----~~ 116 (265)
++|++++++++++.+++|+.+. ...++||||+.|.+ ...|+||+++.+ +.+.++|+||.+++ +|++ ++
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA---PLDFLAGQYLDLLLDDGDKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC---CcccCCCCEEEEEcCCCCceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhcc
Confidence 4799999999999999999776 37899999999998 568999976655 47899999999854 7776 78
Q ss_pred CCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCC
Q 024591 117 VNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPD 196 (265)
Q Consensus 117 ~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~ 196 (265)
+|++|.|+||+|.+.+.....++++|||||+||||+++++++++... ...+++|+|++|+.+++++.++|+++.+++++
T Consensus 78 ~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~ 156 (224)
T cd06189 78 ENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-SKRPIHLYWGARTEEDLYLDELLEAWAEAHPN 156 (224)
T ss_pred CCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhccCHHHHHHHHHhCCC
Confidence 99999999999998876555679999999999999999999998763 45789999999999999999999999998888
Q ss_pred CeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 197 QFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 197 ~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+++..+++++++.|.+..|++++..++... + ..+..+|+|||+.|++++++.|+++|+++++||.
T Consensus 157 -~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~-~-~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~ 221 (224)
T cd06189 157 -FTYVPVLSEPEEGWQGRTGLVHEAVLEDFP-D-LSDFDVYACGSPEMVYAARDDFVEKGLPEENFFS 221 (224)
T ss_pred -eEEEEEeCCCCcCCccccccHHHHHHhhcc-C-ccccEEEEECCHHHHHHHHHHHHHcCCCHHHccc
Confidence 999989988777788888898865544432 2 3467899999999999999999999999999985
No 8
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=4.1e-39 Score=272.13 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=189.8
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-------ceEeeeeeecCCCCcEEEEEEecc--CC
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-------EIVKMIFVGSHSDGIFFNILYHAT--CL 110 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-------~~~r~ysis~~~~~~~~~~~ik~~--~~ 110 (265)
...|+.++|++++++++++.+++|+.+.......++||||+.|.+ ...|+||+++.+..+.++|+||.. |.
T Consensus 3 ~~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~ 82 (247)
T cd06184 3 WRGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGL 82 (247)
T ss_pred CCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCc
Confidence 357899999999999999999999987654346899999999997 367999987766666999999988 45
Q ss_pred CCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHH
Q 024591 111 LSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEE 186 (265)
Q Consensus 111 ~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~ 186 (265)
+|+| +++||++.|.||+|.|.++....++++||||||||||++++++++... +...+++|+|++|+.++++|.++
T Consensus 83 ~s~~l~~~~~~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~-~~~~~i~l~~~~r~~~~~~~~~~ 161 (247)
T cd06184 83 VSNYLHDNVKVGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE-GPGRPVTFIHAARNSAVHAFRDE 161 (247)
T ss_pred chHHHHhcCCCCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc-CCCCcEEEEEEcCchhhHHHHHH
Confidence 8887 779999999999999987654567999999999999999999999875 34578999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEecCCCCCC----CCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCE
Q 024591 187 LDGFAAKYPDQFTIYYVLNQPPESW----NGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEML 262 (265)
Q Consensus 187 l~~l~~~~~~~~~~~~~~s~~~~~~----~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I 262 (265)
|+++.+++++ ++++.+++++.+.+ .+..|+++.+.+.+... ..+..+|+|||+.|++++++.|+++|+++++|
T Consensus 162 l~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i 238 (247)
T cd06184 162 LEELAARLPN-LKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLL--PADADFYLCGPVPFMQAVREGLKALGVPAERI 238 (247)
T ss_pred HHHHHhhCCC-eEEEEEECCCCcccccccccccCccCHHHHhhccC--CCCCEEEEECCHHHHHHHHHHHHHcCCCHHHe
Confidence 9999988877 99999988765442 45788998777766433 35789999999999999999999999999999
Q ss_pred Ee
Q 024591 263 FQ 264 (265)
Q Consensus 263 ~~ 264 (265)
|+
T Consensus 239 ~~ 240 (247)
T cd06184 239 HY 240 (247)
T ss_pred ee
Confidence 85
No 9
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=1.7e-39 Score=272.00 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=184.6
Q ss_pred eEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc---
Q 024591 43 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL--- 114 (265)
Q Consensus 43 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~--- 114 (265)
..+++|.+++.+++++..++|+.+.. +.|+||||+.+++ ...|+||+++.+ +.+.++|.|+..++ .+.+
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~ 78 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEAP---FSFRAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIGASELNLYAMAVME 78 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCCC---CccCCCCEEEEEcCCCcceeecccCCCCCCCcEEEEEEEcCCCcchHHHHH
Confidence 46799999999999999999986653 7899999999998 567999976655 67889999999776 4444
Q ss_pred -cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHh
Q 024591 115 -ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAK 193 (265)
Q Consensus 115 -~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~ 193 (265)
+++|++|.+.||+|.+.+.....+++|||||||||||+++++++++.. +...+++|+|++|+.++++|.++|+++.++
T Consensus 79 ~l~~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~-~~~~~v~l~~g~r~~~~~~~~~el~~l~~~ 157 (232)
T PRK08051 79 RILKDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQ-GPNRPITLYWGGREEDHLYDLDELEALALK 157 (232)
T ss_pred HcCCCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHh-CCCCcEEEEEEeccHHHhhhhHHHHHHHHH
Confidence 899999999999999877654557899999999999999999999876 345789999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHH-HHCCCCCCCEEe
Q 024591 194 YPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHL-EALGYTSEMLFQ 264 (265)
Q Consensus 194 ~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l-~~~gv~~~~I~~ 264 (265)
+++ ++++.+++++++.|.+..|++.+++++.... ..+..+|+|||++|++++++.| +++|++++|||.
T Consensus 158 ~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~~--~~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~~ 226 (232)
T PRK08051 158 HPN-LHFVPVVEQPEEGWQGKTGTVLTAVMQDFGS--LAEYDIYIAGRFEMAKIARELFCRERGAREEHLFG 226 (232)
T ss_pred CCC-cEEEEEeCCCCCCcccceeeehHHHHhhccC--cccCEEEEECCHHHHHHHHHHHHHHcCCCHHHeec
Confidence 887 9999988887777888889998665544422 2456899999999999999999 999999999984
No 10
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=5.9e-39 Score=268.47 Aligned_cols=214 Identities=24% Similarity=0.410 Sum_probs=185.1
Q ss_pred EEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeec-CCCCcEEEEEEecc--CCCCcc----
Q 024591 47 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGS-HSDGIFFNILYHAT--CLLSLL---- 114 (265)
Q Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~-~~~~~~~~~~ik~~--~~~S~~---- 114 (265)
+|++++++++++..++|+.+... ...++||||+.|++ ...|+||+++ +.+.+.++|+|+.. |.+|.|
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGS-LFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCC-cCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhc
Confidence 78999999999999999988764 36799999999997 3579999655 44567799999988 447877
Q ss_pred cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhC
Q 024591 115 ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKY 194 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~ 194 (265)
+++|+++.|.||+|.|.+.....++++||||||||||++++++++.+. ++..+++++|++|+.+++++.++|+++.+++
T Consensus 81 ~~~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~ 159 (231)
T cd06215 81 LKVGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDT-RPDADIVFIHSARSPADIIFADELEELARRH 159 (231)
T ss_pred CCCCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhc-CCCCcEEEEEecCChhhhhHHHHHHHHHHHC
Confidence 789999999999999987654468999999999999999999999876 3457899999999999999999999999988
Q ss_pred CCCeEEEEEecCCCCC-CCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 195 PDQFTIYYVLNQPPES-WNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 195 ~~~~~~~~~~s~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++ +++++++++++.. |.+..|+++.+.+++...+. .+..+|+|||+.|++.+++.|+++|+++++||.
T Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~ 228 (231)
T cd06215 160 PN-FRLHLILEQPAPGAWGGYRGRLNAELLALLVPDL-KERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQ 228 (231)
T ss_pred CC-eEEEEEEccCCCCcccccCCcCCHHHHHHhcCCc-cCCeEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence 87 9999888876653 77889999987787765542 456899999999999999999999999999985
No 11
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=4e-39 Score=270.79 Aligned_cols=221 Identities=19% Similarity=0.309 Sum_probs=187.7
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEecc--CCCCc
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHAT--CLLSL 113 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~--~~~S~ 113 (265)
|.....++|++++++++++..++|+.+.+. ...|+||||+.|++ ...|+||+++.+ +.+.++|+|+.+ |.+|.
T Consensus 3 ~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~ 81 (238)
T cd06211 3 NVKDFEGTVVEIEDLTPTIKGVRLKLDEPE-EIEFQAGQYVNLQAPGYEGTRAFSIASSPSDAGEIELHIRLVPGGIATT 81 (238)
T ss_pred CceEEeEEEEEEEecCCCEEEEEEEcCCCC-cCccCCCCeEEEEcCCCCCccccccCCCCCCCCEEEEEEEECCCCcchh
Confidence 345668999999999999999999987753 25799999999998 368999966554 578999999998 44787
Q ss_pred c----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 114 L----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 114 ~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+ +++||+|.|.||+|.|.+.....+++++|||||||||++++++++++.+ ...+++|+|++|+.+++++.++|++
T Consensus 82 ~l~~~l~~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~ 160 (238)
T cd06211 82 YVHKQLKEGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG-DTRKITLFFGARTRAELYYLDEFEA 160 (238)
T ss_pred hHhhcCCCCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-CCCcEEEEEecCChhhhccHHHHHH
Confidence 7 7899999999999998876544579999999999999999999998763 3468999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCC--CCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 190 FAAKYPDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+.+++++ +++..+++++. +.|.+..|++++ .+.+......++..+|+|||+.|++.+.+.|.++|+++++||.
T Consensus 161 l~~~~~~-~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~ 235 (238)
T cd06211 161 LEKDHPN-FKYVPALSREPPESNWKGFTGFVHD-AAKKHFKNDFRGHKAYLCGPPPMIDACIKTLMQGRLFERDIYY 235 (238)
T ss_pred HHHhCCC-eEEEEEECCCCCCcCcccccCcHHH-HHHHhcccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHccc
Confidence 9999888 99988888753 457778899874 5666654223467899999999999999999999999999985
No 12
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=2e-38 Score=285.56 Aligned_cols=225 Identities=23% Similarity=0.372 Sum_probs=191.3
Q ss_pred CCCCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----c--eEeeeeeecCCCCcEEEEEEecc
Q 024591 36 KPKDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----E--IVKMIFVGSHSDGIFFNILYHAT 108 (265)
Q Consensus 36 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~--~~r~ysis~~~~~~~~~~~ik~~ 108 (265)
.|.+...|+.++|++++.+++++..++|+.+.......|+||||+.|++ . .+|+||+++.++.+.++|+||..
T Consensus 147 ~~~~~~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~ 226 (399)
T PRK13289 147 KPGGWRGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKRE 226 (399)
T ss_pred ccCCCCCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEEC
Confidence 3555688899999999999999999999977643346899999999997 1 34999988777778999999988
Q ss_pred --CCCCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccc
Q 024591 109 --CLLSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDIL 182 (265)
Q Consensus 109 --~~~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~ 182 (265)
|.+|.+ +++||+|.|.||+|+|.++....+++|||||||||||+++++++++.. ....+++|+|++|+.++++
T Consensus 227 ~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~ 305 (399)
T PRK13289 227 AGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ-QPKRPVHFIHAARNGGVHA 305 (399)
T ss_pred CCCeehHHHhhcCCCCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc-CCCCCEEEEEEeCChhhch
Confidence 448887 789999999999999988765567999999999999999999999865 3457999999999999999
Q ss_pred cHHHHHHHHHhCCCCeEEEEEecCCCCC-CC----CcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 183 LKEELDGFAAKYPDQFTIYYVLNQPPES-WN----GGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 183 ~~~~l~~l~~~~~~~~~~~~~~s~~~~~-~~----~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
+.++|++|.+++++ +++..+++++... +. +..|+++.+.+.+.+.. .+..+|+|||+.|++.+++.|++.|+
T Consensus 306 ~~~eL~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~--~~~~vyiCGp~~m~~~v~~~L~~~Gv 382 (399)
T PRK13289 306 FRDEVEALAARHPN-LKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPD--PDADFYFCGPVPFMQFVAKQLLELGV 382 (399)
T ss_pred HHHHHHHHHHhCCC-cEEEEEECCCccccccCCcccccCcccHHHHHhhCCC--CCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999999999887 9999988875432 11 23589997777776643 36789999999999999999999999
Q ss_pred CCCCEEe
Q 024591 258 TSEMLFQ 264 (265)
Q Consensus 258 ~~~~I~~ 264 (265)
++++||.
T Consensus 383 ~~~~I~~ 389 (399)
T PRK13289 383 PEERIHY 389 (399)
T ss_pred CHHHeee
Confidence 9999985
No 13
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1.2e-38 Score=277.26 Aligned_cols=225 Identities=27% Similarity=0.555 Sum_probs=190.2
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--------ceEeeeeeecCC-CCcEEEEEEeccCC
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--------EIVKMIFVGSHS-DGIFFNILYHATCL 110 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--------~~~r~ysis~~~-~~~~~~~~ik~~~~ 110 (265)
++.|++++|++++.+++++.+++|+.|.. +.+.+.||||+++.. ...|+||+++.+ +.+.++|+||+.++
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~-~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~ 127 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSE-EEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKD 127 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcc-cccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCC
Confidence 78899999999999999999999998753 358899999999865 257999966555 56899999999876
Q ss_pred --CCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCC-----CCCcEEEEEEeeCCCcc
Q 024591 111 --LSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENP-----NDKTKVHLIYANVTYED 180 (265)
Q Consensus 111 --~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~-----~~~~~i~L~~~~r~~~~ 180 (265)
+|.+ +++||+|.++||.|.+.++++..++++||||||||||+++|++++++.+ .+..+++|+|++|+.+|
T Consensus 128 G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~d 207 (325)
T PTZ00274 128 GLMTNHLFGMHVGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERH 207 (325)
T ss_pred CcccHHHhcCCCCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHH
Confidence 6888 9999999999998887666555579999999999999999999988652 13458999999999999
Q ss_pred cccHHHHHHHHHhCCCCeEEEEEecCC--CCCCCCcccCCCHHHHhhhCCCCC-CCcEEEEeCCHHHHHHHH--------
Q 024591 181 ILLKEELDGFAAKYPDQFTIYYVLNQP--PESWNGGVGFVSKEMIQTHCPAPA-SDIQVLRCGPPPMNKAMA-------- 249 (265)
Q Consensus 181 ~~~~~~l~~l~~~~~~~~~~~~~~s~~--~~~~~~~~g~~~~~~l~~~~~~~~-~~~~v~vCGp~~~~~~~~-------- 249 (265)
+++.++|++|.++++++++++++++++ ++.|.+..|+++++.+.+.+++.. .+..+|+|||+.|++.+.
T Consensus 208 i~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~~~~~~~ 287 (325)
T PTZ00274 208 ILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHVAGTPMGTMS 287 (325)
T ss_pred hhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHHHHhcCCCccccc
Confidence 999999999999988669999999864 356788899999877777665422 236799999999999984
Q ss_pred ----------------------HHHHHCCCCCCCEEeC
Q 024591 250 ----------------------AHLEALGYTSEMLFQF 265 (265)
Q Consensus 250 ----------------------~~l~~~gv~~~~I~~~ 265 (265)
+.|+++|+..+++|+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PTZ00274 288 SMSSGMNIQPMAPDLNNLVSLGGILGELGYDNDDVYRF 325 (325)
T ss_pred ccccccccccccccccccccccchHHHhCCChhheecC
Confidence 3578899999999998
No 14
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=6.7e-39 Score=282.66 Aligned_cols=220 Identities=19% Similarity=0.324 Sum_probs=187.9
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL 114 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~ 114 (265)
|....+++|++++++++++..++|+.|.. ..+.|+||||+.|.+ ...|+||+++.+ +.+.++|+||..++ +|.+
T Consensus 99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~-~~~~~~pGQfv~l~~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 177 (339)
T PRK07609 99 PVKKLPCRVASLERVAGDVMRLKLRLPAT-ERLQYLAGQYIEFILKDGKRRSYSIANAPHSGGPLELHIRHMPGGVFTDH 177 (339)
T ss_pred cceEEEEEEEEEEcCCCcEEEEEEEcCCC-CCCccCCCCeEEEECCCCceeeeecCCCCCCCCEEEEEEEecCCCccHHH
Confidence 44667899999999999999999998754 247899999999998 578999966555 45899999998754 7776
Q ss_pred ----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHH
Q 024591 115 ----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGF 190 (265)
Q Consensus 115 ----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l 190 (265)
+++||++.+.||+|.|.++....++++||||||||||+++++++++.. +..++++|+|++|+.+|+++.+++++|
T Consensus 178 l~~~l~~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~-~~~~~i~l~~g~r~~~dl~~~e~l~~~ 256 (339)
T PRK07609 178 VFGALKERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAK-GIQRPVTLYWGARRPEDLYLSALAEQW 256 (339)
T ss_pred HHHhccCCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhc-CCCCcEEEEEecCChHHhccHHHHHHH
Confidence 799999999999999988655557999999999999999999999876 345689999999999999999999999
Q ss_pred HHhCCCCeEEEEEecCC--CCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 191 AAKYPDQFTIYYVLNQP--PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 191 ~~~~~~~~~~~~~~s~~--~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
.+++++ ++++.+++++ ++.|.+..|++....++.. .+ ..+..+|+|||+.|++.++..|.++|+++++||.
T Consensus 257 ~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~-~~-~~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~ 329 (339)
T PRK07609 257 AEELPN-FRYVPVVSDALDDDAWTGRTGFVHQAVLEDF-PD-LSGHQVYACGSPVMVYAARDDFVAAGLPAEEFFA 329 (339)
T ss_pred HHhCCC-eEEEEEecCCCCCCCccCccCcHHHHHHhhc-cc-ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 999888 9999988874 4667788899986554443 33 2457899999999999999999999999999985
No 15
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=1.7e-38 Score=265.35 Aligned_cols=213 Identities=22% Similarity=0.391 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCCCCcEEEEEEeccCC--CCcc----c
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHSDGIFFNILYHATCL--LSLL----I 115 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~~~~~~~~~ik~~~~--~S~~----~ 115 (265)
+++|++++.+++++.+++|+.+.. ....|+||||+.|++ ...|+||+++.++.+.++|+||..++ +|.| +
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~-~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~l 81 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEA-GALAFLPGQYVNLQVPGTDETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDRA 81 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCC-CcCccCCCCEEEEEeCCCCcccccccccCCCCCeEEEEEEEcCCCcchhhHHhcc
Confidence 689999999999999999998874 247899999999998 46899997766655899999998744 7877 7
Q ss_pred CCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCC
Q 024591 116 SVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYP 195 (265)
Q Consensus 116 ~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~ 195 (265)
++|+.+.|.||+|.+.+... .++++||||||||||++++++++...+ +..+++|+|++|+.+++++.+++++|.+.++
T Consensus 82 ~~G~~v~v~gP~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~ 159 (228)
T cd06209 82 QPGDRLTLTGPLGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVTRDADLVELDRLEALAERLP 159 (228)
T ss_pred CCCCEEEEECCcccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecCCHHHhccHHHHHHHHHhCC
Confidence 89999999999999876543 478999999999999999999998763 4568999999999999999999999999988
Q ss_pred CCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 196 DQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 196 ~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+ +++..++++++. |.+..|++.....+..+. ..+..+|+|||+.|++.+++.|+++|+++++||.
T Consensus 160 ~-~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~--~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~ 224 (228)
T cd06209 160 G-FSFRTVVADPDS-WHPRKGYVTDHLEAEDLN--DGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYY 224 (228)
T ss_pred C-eEEEEEEcCCCc-cCCCcCCccHHHHHhhcc--CCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEee
Confidence 8 999998887554 667788888644333333 2466899999999999999999999999999985
No 16
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=1.1e-38 Score=282.58 Aligned_cols=221 Identities=21% Similarity=0.312 Sum_probs=187.4
Q ss_pred eEEEEEEEEEEecCCEEEEEEECCCC-CcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEeccCC--CCcc
Q 024591 43 FKEFKLVKRLQLSHNVAKFTFELPTP-TSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHATCL--LSLL 114 (265)
Q Consensus 43 ~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~~~--~S~~ 114 (265)
|+.++|++++.+++++..++|+.|.. ...+.|+||||+.|++ ...|+||+++.++.+.++|+||..++ +|.|
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~ 80 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTW 80 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHH
Confidence 56899999999999999999998764 2346899999999997 45799998777777899999999865 7877
Q ss_pred ----cCCCCEEEEeeeeeeeEecCCC--CceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHH
Q 024591 115 ----ISVNSMQSVANIIGRFRYQPGQ--VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELD 188 (265)
Q Consensus 115 ----~~~G~~v~i~gp~G~~~~~~~~--~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~ 188 (265)
+++||+|.+.||+|+|.++... .++++||||||||||+++|+++++.. +...+++|+|++|+.+|++|.++|+
T Consensus 81 l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~-~~~~~v~l~~~~r~~~d~~~~~el~ 159 (352)
T TIGR02160 81 ANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA-EPRSTFTLVYGNRRTASVMFAEELA 159 (352)
T ss_pred HHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc-CCCceEEEEEEeCCHHHHHHHHHHH
Confidence 7899999999999999876432 37899999999999999999998876 3457899999999999999999999
Q ss_pred HHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCC---CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 189 GFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPA---PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 189 ~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~---~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+|.++++++++++++++++++.+.+..||++.+.+.+.+.. ......+|+|||+.|++++++.|.++|+++++||.
T Consensus 160 ~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~ 238 (352)
T TIGR02160 160 DLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGVPAGRVHL 238 (352)
T ss_pred HHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 99988886699998988876666666788876555554432 12456899999999999999999999999999985
No 17
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=1.5e-38 Score=266.11 Aligned_cols=214 Identities=22% Similarity=0.317 Sum_probs=181.3
Q ss_pred EEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEeccC--CCCcc----c
Q 024591 47 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHATC--LLSLL----I 115 (265)
Q Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~~--~~S~~----~ 115 (265)
+|++++++++++.+++|+.+... .+.++||||+.|.+ ..+|+||+++.+..+.++|.|+.++ .+|.| +
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~ 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPL-QYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCC-CCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC
Confidence 68999999999999999977653 35799999999987 4579999776665788999999884 47887 7
Q ss_pred CCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCC
Q 024591 116 SVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYP 195 (265)
Q Consensus 116 ~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~ 195 (265)
++||++.|+||+|.|.+++...++++||||||||||+++++++++.. ....+++|+|++|+.+++++.++|+++.++++
T Consensus 81 ~~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~-~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~ 159 (231)
T cd06191 81 QPGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT-APESDFTLIHSARTPADMIFAQELRELADKPQ 159 (231)
T ss_pred CCCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc-CCCCCEEEEEecCCHHHHhHHHHHHHHHHhCC
Confidence 89999999999999988765567999999999999999999999866 33578999999999999999999999998887
Q ss_pred CCeEEEEEecCCC--CCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 196 DQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 196 ~~~~~~~~~s~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+ +++.++++++. +.|.+..|++..+..+...++ ..+..+|+|||+.|++.+++.|+++|+++++||.
T Consensus 160 ~-~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~ 228 (231)
T cd06191 160 R-LRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPD-RLEREAFICGPAGMMDAVETALKELGMPPERIHT 228 (231)
T ss_pred C-eEEEEEECCCCCCccccCCcccccHHHHHHhCcc-ccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence 7 99999998753 456666777775555554433 2357899999999999999999999999999985
No 18
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=4.9e-38 Score=264.96 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=189.8
Q ss_pred hccCCCCCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCC--CCcEEEEE
Q 024591 32 FSSKKPKDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHS--DGIFFNIL 104 (265)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~--~~~~~~~~ 104 (265)
++.-.|.+......++|++++.+++++.+++|+.+.. ...++||||+.|.+ ...|+||+++.+ +.+.++|+
T Consensus 6 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ 83 (243)
T cd06216 6 LELINPLWSARELRARVVAVRPETADMVTLTLRPNRG--WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLT 83 (243)
T ss_pred hhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCC--CCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEE
Confidence 3455576777888999999999999999999997654 46799999999987 457999976655 48899999
Q ss_pred Eecc--CCCCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCC
Q 024591 105 YHAT--CLLSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTY 178 (265)
Q Consensus 105 ik~~--~~~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~ 178 (265)
||.+ |.+|.+ +++||++.+.||+|.|.++.+..+++++||||+||||++++++++...+ ...+++++|++|+.
T Consensus 84 ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r~~ 162 (243)
T cd06216 84 VKAQPDGLVSNWLVNHLAPGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTR 162 (243)
T ss_pred EEEcCCCcchhHHHhcCCCCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcCCh
Confidence 9998 557877 6799999999999999877654689999999999999999999998763 45789999999999
Q ss_pred cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 179 EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 179 ~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
+++++.++|+++.+++++ +++.++++++ +..|++..+.+++...+ ..+..+|+|||+.|++++++.|+++|++
T Consensus 163 ~~~~~~~el~~l~~~~~~-~~~~~~~s~~-----~~~g~~~~~~l~~~~~~-~~~~~vyvcGp~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 163 EDVIFADELRALAAQHPN-LRLHLLYTRE-----ELDGRLSAAHLDAVVPD-LADRQVYACGPPGFLDAAEELLEAAGLA 235 (243)
T ss_pred hhhHHHHHHHHHHHhCCC-eEEEEEEcCC-----ccCCCCCHHHHHHhccC-cccCeEEEECCHHHHHHHHHHHHHCCCc
Confidence 999999999999988878 9988887764 45688887778777654 2457999999999999999999999999
Q ss_pred CCCEEe
Q 024591 259 SEMLFQ 264 (265)
Q Consensus 259 ~~~I~~ 264 (265)
++||.
T Consensus 236 -~~i~~ 240 (243)
T cd06216 236 -DRLHT 240 (243)
T ss_pred -cceee
Confidence 99985
No 19
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=6.4e-39 Score=276.05 Aligned_cols=222 Identities=19% Similarity=0.381 Sum_probs=186.4
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--c--------------------------------
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--E-------------------------------- 85 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~-------------------------------- 85 (265)
+..+..++|++++.+++++..++|+.+... .+.|+||||+.|.+ .
T Consensus 6 ~~~~~~~~v~~~~~~~~d~~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (283)
T cd06188 6 GAKKWECTVISNDNVATFIKELVLKLPSGE-EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEP 84 (283)
T ss_pred ccceEEEEEEEcccccchhhheEEecCCCc-eeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCc
Confidence 456678999999999999999999987642 36899999999997 2
Q ss_pred eEeeeeeecCC-CCcEEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChH
Q 024591 86 IVKMIFVGSHS-DGIFFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGIT 150 (265)
Q Consensus 86 ~~r~ysis~~~-~~~~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIa 150 (265)
..|+||+++.+ +.+.++|+||.+ |.+|.+ +++|++|.|+||+|.|.+.. ..++++|||||||||
T Consensus 85 ~~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~~vlIAgGtGIt 163 (283)
T cd06188 85 VSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD-TDREMVFIGGGAGMA 163 (283)
T ss_pred cccccCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC-CCCcEEEEEecccHh
Confidence 24999966655 478999999962 237777 89999999999999988753 457999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCC--CCCCCcccCCCHHHHhhhCC
Q 024591 151 PMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCP 228 (265)
Q Consensus 151 p~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~~~~l~~~~~ 228 (265)
|+++|+++++..+....+++|+|++|+.+++++.++|+++.+++++ ++++.+++++. +.|.+..|+++....+..+.
T Consensus 164 P~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~~~~ 242 (283)
T cd06188 164 PLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPN-FKYHPVLSEPQPEDNWDGYTGFIHQVLLENYLK 242 (283)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCC-eEEEEEECCCCccCCCCCcceeecHHHHHHHhc
Confidence 9999999987654334789999999999999999999999999988 99988888754 56777889999766655443
Q ss_pred C--CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 229 A--PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 229 ~--~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
. ...+..+|+|||+.|+++++..|+++|+++++||.
T Consensus 243 ~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~ 280 (283)
T cd06188 243 KHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAF 280 (283)
T ss_pred cCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHeec
Confidence 1 12456899999999999999999999999999985
No 20
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=2.5e-38 Score=304.39 Aligned_cols=227 Identities=37% Similarity=0.671 Sum_probs=197.1
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeee-ecCCCCcEEEEEEecc----
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFV-GSHSDGIFFNILYHAT---- 108 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysi-s~~~~~~~~~~~ik~~---- 108 (265)
+|..|.+++|++++.+++++..|+|+++...+.+.++||||++|++ ...|+||+ +.+.+.+.++|+||.+
T Consensus 630 ~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~ 709 (888)
T PLN02252 630 NPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNV 709 (888)
T ss_pred ccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccc
Confidence 6778999999999999999999999998776567899999999987 46899995 4455678999999987
Q ss_pred -------CCCCcc---cCCCCEEEEeeeeeeeEec--------C--CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcE
Q 024591 109 -------CLLSLL---ISVNSMQSVANIIGRFRYQ--------P--GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTK 168 (265)
Q Consensus 109 -------~~~S~~---~~~G~~v~i~gp~G~~~~~--------~--~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~ 168 (265)
|.+|++ +++|++|.|+||+|.|.+. . ...++++||||||||||+++++++++....+..+
T Consensus 710 ~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d~t~ 789 (888)
T PLN02252 710 HPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPEDKTE 789 (888)
T ss_pred cCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCCCCc
Confidence 338887 8999999999999987553 1 1247899999999999999999999876445679
Q ss_pred EEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCC-CCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHH
Q 024591 169 VHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP-ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKA 247 (265)
Q Consensus 169 i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~ 247 (265)
++|+|++|+.+|++++++|++|.+++|+++++.++++++. +.|.+..|+++++.+++.++....+..+|+|||+.|++.
T Consensus 790 i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~Mi~~ 869 (888)
T PLN02252 790 MSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPMIEF 869 (888)
T ss_pred EEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHHHHH
Confidence 9999999999999999999999999877799999998865 678889999998888888765445678999999999995
Q ss_pred -HHHHHHHCCCCCCCEEeC
Q 024591 248 -MAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 248 -~~~~l~~~gv~~~~I~~~ 265 (265)
++..|+++|+++++||.|
T Consensus 870 av~~~L~~~G~~~~~I~~f 888 (888)
T PLN02252 870 ACQPNLEKMGYDKDSILVF 888 (888)
T ss_pred HHHHHHHHcCCCHHHEEEC
Confidence 889999999999999998
No 21
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=4.2e-38 Score=263.58 Aligned_cols=215 Identities=24% Similarity=0.421 Sum_probs=182.8
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc----
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL---- 114 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~---- 114 (265)
+++|++++.+++++.+++|+.+.+. .+.++||||+.|.+ ...|+||+++.+ +.+.++|+||.+++ +|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~~ 80 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPE-PIKFFAGQYVDITVPGTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDDG 80 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCC-cCCcCCCCeEEEEcCCCCcccccccCCCCCCCCEEEEEEEECCCCchhhHHhhc
Confidence 5799999999999999999976653 46899999999998 478999966555 45899999999844 7776
Q ss_pred cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhC
Q 024591 115 ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKY 194 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~ 194 (265)
+++|+++.+.||+|.+.+.....++++|||||+||||++++++++...+ ...+++|+|++|+.+++++.++|+++.+++
T Consensus 81 l~~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~ 159 (232)
T cd06212 81 LAVGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-SDRPVRFFYGARTARDLFYLEEIAALGEKI 159 (232)
T ss_pred CCCCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-CCCcEEEEEeccchHHhccHHHHHHHHHhC
Confidence 7899999999999998876555689999999999999999999998763 456899999999999999999999999888
Q ss_pred CCCeEEEEEecCCC--CCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 195 PDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 195 ~~~~~~~~~~s~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++ +++..+++++. +.|.+..|++.+ .+.+...+. .+..+|+|||+.|++.+...|+++|++++|||.
T Consensus 160 ~~-~~~~~~~s~~~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~ 228 (232)
T cd06212 160 PD-FTFIPALSESPDDEGWSGETGLVTE-VVQRNEATL-AGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFY 228 (232)
T ss_pred CC-EEEEEEECCCCCCCCCcCCcccHHH-HHHhhccCc-cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence 77 99888888754 456667888874 455554432 467899999999999999999999999999985
No 22
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1.7e-38 Score=273.77 Aligned_cols=222 Identities=21% Similarity=0.337 Sum_probs=180.0
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCC--CcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCCCCc
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTP--TSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCLLSL 113 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~~S~ 113 (265)
||..+++++|++++++++++..++|+.+.+ ...+.|+||||+.|++ ...|+||+++.+ +.+.++|+||..|.+|.
T Consensus 1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~pySias~p~~~~~l~l~Ik~~G~~S~ 80 (289)
T PRK08345 1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIRRAGRVTT 80 (289)
T ss_pred CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCceeeEecCCCCCCCEEEEEEEeCChHHH
Confidence 578899999999999999977777775433 3346799999999987 345899966554 56889999999988888
Q ss_pred c---cCCCCEEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 114 L---ISVNSMQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 114 ~---~~~G~~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+ +++||+|.|+||+|. |.++....++++||||||||||+++++++++..+....+++|+|++|+.+|+++++||++
T Consensus 81 ~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~~~~deL~~ 160 (289)
T PRK08345 81 VIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFYDELIK 160 (289)
T ss_pred HHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHhhHHHHHHH
Confidence 8 899999999999999 655433346899999999999999999998876434578999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCC------------cccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNG------------GVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~------------~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
|.+++++ ++++.++++++ .|.+ ..|++.. .+.+...+ .++..+|+|||+.|++++++.|+++|+
T Consensus 161 l~~~~~~-~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~-~~~~~~~~-~~~~~vyiCGP~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 161 DLAEAEN-VKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTD-LFREANTD-PKNTYAAICGPPVMYKFVFKELINRGY 236 (289)
T ss_pred HHhcCCC-EEEEEEecCCC-CCcCccccccccccccccCchhh-hhhhcCCC-ccccEEEEECCHHHHHHHHHHHHHcCC
Confidence 9888877 99999888743 2211 2455553 33332222 245789999999999999999999999
Q ss_pred CCCCEEe
Q 024591 258 TSEMLFQ 264 (265)
Q Consensus 258 ~~~~I~~ 264 (265)
++++||.
T Consensus 237 ~~~~i~~ 243 (289)
T PRK08345 237 RPERIYV 243 (289)
T ss_pred CHHHEEE
Confidence 9999985
No 23
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=3.4e-38 Score=277.24 Aligned_cols=217 Identities=18% Similarity=0.308 Sum_probs=182.7
Q ss_pred CCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeecCC-CCcEEEEEEeccCC--CCc
Q 024591 41 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGSHS-DGIFFNILYHATCL--LSL 113 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~ 113 (265)
.....++|++++++++++..++|+.+. ...|+||||+.|++ ...|+||+++.+ +.+.++|+||..++ +|+
T Consensus 7 ~~~~~~~V~~i~~~t~~v~~l~l~~~~---~~~f~pGQfv~l~~~~~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~ 83 (332)
T PRK10684 7 QCPNRMQVHSIVQETPDVWTISLICHD---FYPYRAGQYALVSIRNSAETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQ 83 (332)
T ss_pred CCceeEEEEEEEccCCCeEEEEEcCCC---CCCcCCCCEEEEEecCCCEeeeeecccCCCCCCCcEEEEEEEcCCCcchh
Confidence 344589999999999999999998654 37799999999998 357999977655 45789999999854 788
Q ss_pred c----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 114 L----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 114 ~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
| +++||+|.+.||+|+|.++....++++||||||||||+++|+++++.. ....+++|+|++|+.++++|.++|++
T Consensus 84 ~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~-~~~~~v~l~y~~r~~~~~~~~~el~~ 162 (332)
T PRK10684 84 WLTRDVKRGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKN-RPQADVQVIFNVRTPQDVIFADEWRQ 162 (332)
T ss_pred HHHhcCCCCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhc-CCCCCEEEEEeCCChHHhhhHHHHHH
Confidence 7 889999999999999987655557899999999999999999998765 33478999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
|.+++++ +++++..++.. ......|+++.+.+.+.+++. .+..+|+|||+.|++.+++.|++.|+++++||.
T Consensus 163 l~~~~~~-~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~-~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~ 234 (332)
T PRK10684 163 LKQRYPQ-LNLTLVAENNA-TEGFIAGRLTRELLQQAVPDL-ASRTVMTCGPAPYMDWVEQEVKALGVTADRFFK 234 (332)
T ss_pred HHHHCCC-eEEEEEeccCC-CCCccccccCHHHHHHhcccc-cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEe
Confidence 9999888 88877765432 122257999987777755543 467899999999999999999999999999985
No 24
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=8.1e-38 Score=263.26 Aligned_cols=221 Identities=24% Similarity=0.371 Sum_probs=187.5
Q ss_pred eEEEEEEEEEEecCCEEEEEEECCCCC-cccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEeccCC--CCcc
Q 024591 43 FKEFKLVKRLQLSHNVAKFTFELPTPT-SVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHATCL--LSLL 114 (265)
Q Consensus 43 ~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~~~--~S~~ 114 (265)
++.++|++++++++++..++|+.|.+. ..+.++||||+.|.+ ..+|+||+++.++.+.++|+|+..++ +|.|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 1 FHPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNW 80 (241)
T ss_pred CceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchh
Confidence 357899999999999999999988752 235799999999997 37899997666655689999998854 7777
Q ss_pred ----cCCCCEEEEeeeeeeeEecCC-CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 115 ----ISVNSMQSVANIIGRFRYQPG-QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 115 ----~~~G~~v~i~gp~G~~~~~~~-~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+++|+++.|.||+|.|.+.++ ..++++|||+||||||++++++++.... ...+++|+|++|+.+++++.+++++
T Consensus 81 l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~ 159 (241)
T cd06214 81 ANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE-PASRVTLVYGNRTEASVIFREELAD 159 (241)
T ss_pred HHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhHHHHHHH
Confidence 788999999999999887765 4689999999999999999999988763 3578999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCC---CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPA---PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~---~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+.+..+.++++..++++++..|.+..|++.++.+.+.+.. ..++..||+|||+.|++.++..|+++|+++++||.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~ 237 (241)
T cd06214 160 LKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVPAERIHR 237 (241)
T ss_pred HHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCCCHHHeec
Confidence 9988875699988888776667677899987666554421 13467999999999999999999999999999984
No 25
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=2.5e-37 Score=258.13 Aligned_cols=211 Identities=23% Similarity=0.372 Sum_probs=177.6
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEecc--CCCCcc----
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHAT--CLLSLL---- 114 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~--~~~S~~---- 114 (265)
+++|++++.+++++.+++|+.+.. ..++||||+.|++ ...|+||+++.+ +.+.++|+||.. |.+|++
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~ 78 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRP---IAYKAGQYAELTLPGLPAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGA 78 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCC---CCcCCCCEEEEEeCCCCcccccccCCCCCCCCEEEEEEEECCCCcchHHHHhc
Confidence 578999999999999999987653 6799999999998 468999966544 568899999987 447887
Q ss_pred cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhC
Q 024591 115 ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKY 194 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~ 194 (265)
+++||+|.|+||+|.|.+.. ..++++||||||||||++++++++.+.+ ..++++++|++|+.+|+++.++++++.+++
T Consensus 79 l~~G~~v~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~~~~l~~l~~~~ 156 (227)
T cd06213 79 DRTGERLTVRGPFGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAAG-TKRDVTLLFGARTQRDLYALDEIAAIAARW 156 (227)
T ss_pred CCCCCEEEEeCCCcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhccHHHHHHHHHhc
Confidence 78999999999999998754 3479999999999999999999998763 456899999999999999999999999775
Q ss_pred CCCeEEEEEecCCC--CCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 195 PDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 195 ~~~~~~~~~~s~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
..++++..+++++. ..|.+..|++.+ .+.+.. ..+..+|+|||++|++++++.|+++|+++++||.
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~g~~g~v~~-~l~~~~---~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~ 224 (227)
T cd06213 157 RGRFRFIPVLSEEPADSSWKGARGLVTE-HIAEVL---LAATEAYLCGPPAMIDAAIAVLRALGIAREHIHA 224 (227)
T ss_pred cCCeEEEEEecCCCCCCCccCCcccHHH-HHHhhc---cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEec
Confidence 44489888887653 346667777764 455444 2467899999999999999999999999999985
No 26
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=1.7e-37 Score=261.35 Aligned_cols=212 Identities=15% Similarity=0.186 Sum_probs=176.9
Q ss_pred EEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeecCCCCcEEEEEEecc--CCCCcc---c
Q 024591 47 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGSHSDGIFFNILYHAT--CLLSLL---I 115 (265)
Q Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~~~~~~~~~~~ik~~--~~~S~~---~ 115 (265)
+|++++.+++++.+++|+.+. ...|+||||+.|++ ..+|+||+++.++.+.++|+|+.. |.+|+| +
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l 77 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDI---PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKL 77 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCC---CCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcC
Confidence 478999999999999998766 37799999999997 367999977666668999999977 448888 8
Q ss_pred CCCCEEEEe-eeeeeeEecCC-CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHh
Q 024591 116 SVNSMQSVA-NIIGRFRYQPG-QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAK 193 (265)
Q Consensus 116 ~~G~~v~i~-gp~G~~~~~~~-~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~ 193 (265)
++||.+.+. ||+|.|.++.. ..++++||||||||||+++++++++.. +...+++|+|++|+.+|+++.++|.++.++
T Consensus 78 ~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~-~~~~~v~l~~~~r~~~d~~~~~el~~l~~~ 156 (241)
T cd06195 78 KPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW-ERFDKIVLVHGVRYAEELAYQDEIEALAKQ 156 (241)
T ss_pred CCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh-CCCCcEEEEEccCCHHHhhhHHHHHHHHhh
Confidence 999999999 99999987654 458999999999999999999999854 345789999999999999999999999987
Q ss_pred -CCCCeEEEEEecCCCCCCCCcccCCCHHHH----hhhCCC--CCCCcEEEEeCCHHHHHHHHHHHHHCCCCC------C
Q 024591 194 -YPDQFTIYYVLNQPPESWNGGVGFVSKEMI----QTHCPA--PASDIQVLRCGPPPMNKAMAAHLEALGYTS------E 260 (265)
Q Consensus 194 -~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l----~~~~~~--~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~------~ 260 (265)
+++ +++..+++++++.| +..|+++.... .+.+.. ..++..+|+|||+.|++.+++.|+++|+++ .
T Consensus 157 ~~~~-~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~ 234 (241)
T cd06195 157 YNGK-FRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPG 234 (241)
T ss_pred cCCC-EEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCc
Confidence 445 99998888876665 56778875322 222211 124678999999999999999999999999 9
Q ss_pred CEEe
Q 024591 261 MLFQ 264 (265)
Q Consensus 261 ~I~~ 264 (265)
+||.
T Consensus 235 ~~~~ 238 (241)
T cd06195 235 NITV 238 (241)
T ss_pred eEEE
Confidence 9985
No 27
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=7.3e-37 Score=258.55 Aligned_cols=214 Identities=23% Similarity=0.323 Sum_probs=185.4
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCC-cEEEEEEeccCC--C
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDG-IFFNILYHATCL--L 111 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~-~~~~~~ik~~~~--~ 111 (265)
+..|..++|.+++++++++..++|+.+.... +.|+||||+.|.+ ...|.||+++.+.+ +.+.|.||+.++ +
T Consensus 2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~-~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~ 80 (266)
T COG1018 2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLR-LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGG 80 (266)
T ss_pred CCceEEEEEEEEEEecCceEEEEEEcCCCCc-cccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcc
Confidence 4578899999999999999999999888732 2799999999999 58999997776655 589999999973 9
Q ss_pred Ccc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHH
Q 024591 112 SLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEEL 187 (265)
Q Consensus 112 S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l 187 (265)
|+| +++||+|.|++|.|.|.++.....+++|||||+||||++||++.+...+ . .++.++|++|+.+++.|+++
T Consensus 81 S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-~-~~v~l~h~~R~~~~~af~de- 157 (266)
T COG1018 81 SNWLHDHLKVGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-P-ADVVLVHAARTPADLAFRDE- 157 (266)
T ss_pred cHHHHhcCCCCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-C-CCEEEEEecCChhhcchhhH-
Confidence 998 9999999999999999998755568999999999999999999998873 4 89999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 188 DGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 188 ~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+.+.+++++...+..+.+ +....|+++...+....++ .. ..+|+|||..||++++..|.++|++.++||.
T Consensus 158 ~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~-~~-r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~ 227 (266)
T COG1018 158 LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLSAAPD-GG-REVYLCGPGPFMQAVRLALEALGVPDDRVHL 227 (266)
T ss_pred HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhccCCC-CC-CEEEEECCHHHHHHHHHHHHHcCCChhcEEE
Confidence 999999998666666664 3345778887666666553 22 8999999999999999999999999999985
No 28
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=3e-37 Score=256.99 Aligned_cols=210 Identities=23% Similarity=0.333 Sum_probs=179.1
Q ss_pred EEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeec-CCCCcEEEEEEecc--CCCCcc----cC
Q 024591 48 LVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGS-HSDGIFFNILYHAT--CLLSLL----IS 116 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~-~~~~~~~~~~ik~~--~~~S~~----~~ 116 (265)
|++++++++++..++|+.+.. ..++||||+.|.+ ...|+||+++ +.+.+.++|+|+.. |.+|.| ++
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~---~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~ 77 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP---LPFWAGQYVNVTVPGRPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELK 77 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC---CCcCCCceEEEEcCCCCCcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCc
Confidence 578899999999999998775 7799999999998 2589999554 44558899999998 448877 78
Q ss_pred CCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCC
Q 024591 117 VNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPD 196 (265)
Q Consensus 117 ~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~ 196 (265)
+||.+.|.||+|.+.+.....+++++||||+||||++++++++...+ ...+++|+|++|+.+++++.++|+++.+++++
T Consensus 78 ~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (224)
T cd06187 78 VGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGARTERDLYDLEGLLALAARHPW 156 (224)
T ss_pred cCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhhcChHHHHHHHHhCCC
Confidence 99999999999998876554678999999999999999999998763 45789999999999999999999999999888
Q ss_pred CeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 197 QFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 197 ~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+++.+++++++..|.+..|++.+. +.+...+ ..+..+|+|||+.|++.+++.|++.|+++++||.
T Consensus 157 -~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~-~~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~ 221 (224)
T cd06187 157 -LRVVPVVSHEEGAWTGRRGLVTDV-VGRDGPD-WADHDIYICGPPAMVDATVDALLARGAPPERIHF 221 (224)
T ss_pred -eEEEEEeCCCCCccCCCcccHHHH-HHHhccc-cccCEEEEECCHHHHHHHHHHHHHcCCCHHHeec
Confidence 999888887665577778888854 4444332 3467899999999999999999999999999984
No 29
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=3.4e-37 Score=258.04 Aligned_cols=212 Identities=22% Similarity=0.331 Sum_probs=177.5
Q ss_pred EEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEecc--CCCCcc----cCC
Q 024591 48 LVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHAT--CLLSLL----ISV 117 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~--~~~S~~----~~~ 117 (265)
|++++.+++++..++|+.+.+ ..|+||||+.|++ ...|+||+++.+ +.+.++|+||.. |.+|.+ +++
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~~ 77 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP---ADFLPGQYALLALPGVEGARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLEP 77 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc---cccCCCCEEEEECCCCCcccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCCC
Confidence 467899999999999997764 5799999999998 378999966544 558999999987 447877 589
Q ss_pred CCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCC-CCCcEEEEEEeeCCCcccccHHHHHHHHHhCCC
Q 024591 118 NSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENP-NDKTKVHLIYANVTYEDILLKEELDGFAAKYPD 196 (265)
Q Consensus 118 G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~-~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~ 196 (265)
|+++.|+||+|.+.+..+..++++||||||||||++++++++.+.+ +...+++|+|++|+.+++++.++|+++.+.+++
T Consensus 78 g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~ 157 (232)
T cd06190 78 GDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSALVALGAR 157 (232)
T ss_pred CCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHHHHHHHHhCCC
Confidence 9999999999998776555579999999999999999999998752 235789999999999999999999999988766
Q ss_pred CeEEEEEecCCCC----CCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCC-CCCEEe
Q 024591 197 QFTIYYVLNQPPE----SWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYT-SEMLFQ 264 (265)
Q Consensus 197 ~~~~~~~~s~~~~----~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~-~~~I~~ 264 (265)
++++++++++.. .|.+..|++.+ .+.+.+.....+..||+|||+.|++.+.+.|++.|+. +++||.
T Consensus 158 -~~~~~~~s~~~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~ 228 (232)
T cd06190 158 -LRVTPAVSDAGSGSAAGWDGPTGFVHE-VVEATLGDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHF 228 (232)
T ss_pred -EEEEEEeCCCCCCcCCCccCCcCcHHH-HHHhhccCCccccEEEEECCHHHHHHHHHHHHHhCCCChHheee
Confidence 999888876543 36778888884 5666655434568999999999999999999998765 999985
No 30
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=3.3e-37 Score=262.36 Aligned_cols=209 Identities=21% Similarity=0.295 Sum_probs=175.8
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCCCCcEEEEEEeccCCCCcc---cCCC
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHSDGIFFNILYHATCLLSLL---ISVN 118 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~~~~~~~~~ik~~~~~S~~---~~~G 118 (265)
.+++|++++++++++..++|+.| ..++||||+.|++ ...|+||+++.+ .+.++|+||..|.+|++ +++|
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~-----~~~~pGQfi~l~~~~~~~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~l~~G 81 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD-----GPVKPGQFFEVSLPKVGEAPISVSDYG-DGYIDLTIRRVGKVTDEIFNLKEG 81 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC-----CCCCCCceEEEEeCCCCcceeeccCCC-CCEEEEEEEeCCchhhHHHhCCCC
Confidence 36999999999999999999854 3699999999998 345999977654 67899999999888888 8999
Q ss_pred CEEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCC
Q 024591 119 SMQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQ 197 (265)
Q Consensus 119 ~~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~ 197 (265)
|+|.|+||+|+ |.++....++++||||||||||+++++++++...++..+++|+|++|+.+++++.++|++|.+++
T Consensus 82 d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~el~~~~~~~--- 158 (263)
T PRK08221 82 DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDLKRWREKI--- 158 (263)
T ss_pred CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHHHHHhhcC---
Confidence 99999999998 77665445799999999999999999999987644456999999999999999999999998753
Q ss_pred eEEEEEecCCCCCCCCcccCCCHHHHhhh-CCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 198 FTIYYVLNQPPESWNGGVGFVSKEMIQTH-CPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 198 ~~~~~~~s~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++.+.++++++.|.+..|++++. +.+. ..+ ..+..+|+|||+.|+++++..|+++|+++++||.
T Consensus 159 -~~~~~~~~~~~~~~~~~G~v~~~-l~~~~~~~-~~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~~ 223 (263)
T PRK08221 159 -NLILTLDEGEEGYRGNVGLVTKY-IPELTLKD-IDNMQVIVVGPPIMMKFTVLEFLKRGIKEENIWV 223 (263)
T ss_pred -cEEEEecCCCCCCccCccccChh-hHhccCCC-cCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 34555666666787889999964 4433 222 2467899999999999999999999999999984
No 31
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=6.4e-37 Score=254.74 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=170.5
Q ss_pred EEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc----cCCC
Q 024591 48 LVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL----ISVN 118 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~----~~~G 118 (265)
|++++.+++++..++|+.+.. ..|+||||+.|++ ...|+||+++.+ +.+.++|+|+..++ +|.+ +++|
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~---~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~~G 77 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP---LPYLPGQYVNLRRAGGLARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPG 77 (222)
T ss_pred CceeeecCCCEEEEEEecCCC---CCcCCCCEEEEEcCCCCceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccCCC
Confidence 568899999999999998764 7799999999998 567999966555 44789999998744 7887 5899
Q ss_pred CEEEEeeeeeeeEecC-CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCC
Q 024591 119 SMQSVANIIGRFRYQP-GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQ 197 (265)
Q Consensus 119 ~~v~i~gp~G~~~~~~-~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~ 197 (265)
|.+.|.||+|.+.+.+ ...+++++||||+||||+++++++++.. ++..+++++|++|+.+++++.++|++|.+++++
T Consensus 78 ~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~- 155 (222)
T cd06194 78 HALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ-GHQGEIRLVHGARDPDDLYLHPALLWLAREHPN- 155 (222)
T ss_pred CEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc-CCCccEEEEEecCChhhccCHHHHHHHHHHCCC-
Confidence 9999999999987654 4457899999999999999999998865 345789999999999999999999999988888
Q ss_pred eEEEEEecCCCCCCCC-cccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 198 FTIYYVLNQPPESWNG-GVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 198 ~~~~~~~s~~~~~~~~-~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+++..+++++++.+.. ..+++ ...+........+|+|||+.|++.+++.|.+.|+++++||.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~ 218 (222)
T cd06194 156 FRYIPCVSEGSQGDPRVRAGRI-----AAHLPPLTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYA 218 (222)
T ss_pred eEEEEEEccCCCCCcccccchh-----hhhhccccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeee
Confidence 9998888876543321 12222 22222223568899999999999999999999999999985
No 32
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=3e-37 Score=256.05 Aligned_cols=204 Identities=21% Similarity=0.365 Sum_probs=172.4
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeecCCCCcEEEEEEeccC---CCCcc-
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGSHSDGIFFNILYHATC---LLSLL- 114 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~~~~~~~~~~~ik~~~---~~S~~- 114 (265)
+++|++++.+++++..++|+.+.. +.|+||||+.|++ ...|+||+++.++++.++|+||..+ .+|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l 78 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG---YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQL 78 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc---CCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHH
Confidence 578999999999999999997764 6899999999987 2689999776666789999999873 36777
Q ss_pred --cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHH
Q 024591 115 --ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAA 192 (265)
Q Consensus 115 --~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~ 192 (265)
+++||++.++||+|+|.+. ++++||||||||||+++++++++.. +...+++|+|++|+.+|+++.++|++|.
T Consensus 79 ~~l~~G~~v~i~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~el~~l~- 152 (218)
T cd06196 79 GRLQPGDTLLIEDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAK-GKLEGNTLIFANKTEKDIILKDELEKML- 152 (218)
T ss_pred HhCCCCCEEEEECCccceEec----CceEEEecCCCcChHHHHHHHHHhC-CCCceEEEEEecCCHHHHhhHHHHHHhh-
Confidence 8999999999999998753 5789999999999999999999875 3457899999999999999999999985
Q ss_pred hCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 193 KYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 193 ~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+ +++..+++++... ....|+++.+.+++...+ ....+|+|||+.|++++++.|.++|+++++||+
T Consensus 153 ---~-~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~~--~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~ 217 (218)
T cd06196 153 ---G-LKFINVVTDEKDP-GYAHGRIDKAFLKQHVTD--FNQHFYVCGPPPMEEAINGALKELGVPEDSIVF 217 (218)
T ss_pred ---c-ceEEEEEcCCCCC-CeeeeEECHHHHHHhcCC--CCCEEEEECCHHHHHHHHHHHHHcCCCHHHEec
Confidence 3 5666777764322 225789987777776543 346899999999999999999999999999985
No 33
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=4.1e-37 Score=260.58 Aligned_cols=213 Identities=23% Similarity=0.392 Sum_probs=179.6
Q ss_pred EEEEEEecCCEEEEEEECCCCC-cccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCCCCcc---cCCCCE
Q 024591 48 LVKRLQLSHNVAKFTFELPTPT-SVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCLLSLL---ISVNSM 120 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~-~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~~S~~---~~~G~~ 120 (265)
|++++.+++++..++|+.+.+. ....|+||||+.|.+ ...|+||+++.+ +.+.++|+||..|.+|++ +++|++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l~~G~~ 80 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRRVGRVTEALHELKPGDT 80 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCCccceEecCCCCCCCeEEEEEEeCChhhHHHHcCCCCCE
Confidence 5788999999999999987652 247899999999998 345999966555 478999999999888888 899999
Q ss_pred EEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeE
Q 024591 121 QSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFT 199 (265)
Q Consensus 121 v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~ 199 (265)
+.++||+|. |.++....+++||||+||||||+++++++++...++..+++|+|++|+.+++++.++|+++.++ ++ ++
T Consensus 81 v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~-~~ 158 (253)
T cd06221 81 VGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKR-SD-VE 158 (253)
T ss_pred EEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHHHHhc-CC-eE
Confidence 999999999 5544324589999999999999999999998764345789999999999999999999999987 66 99
Q ss_pred EEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 200 IYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 200 ~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+.++++++.+.|.+..|++.+ .+.+.... ..+..||+|||+.|++.+++.|++.|+++++||.
T Consensus 159 ~~~~~s~~~~~~~~~~g~v~~-~l~~~~~~-~~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~~ 221 (253)
T cd06221 159 VILTVDRAEEGWTGNVGLVTD-LLPELTLD-PDNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWV 221 (253)
T ss_pred EEEEeCCCCCCccCCccccch-hHHhcCCC-cCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 998888777667777888885 44444332 2567899999999999999999999999999985
No 34
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=4.5e-37 Score=255.42 Aligned_cols=209 Identities=23% Similarity=0.344 Sum_probs=175.4
Q ss_pred EEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCC-CcEEEEEEecc--CCCCcc---cCCC
Q 024591 50 KRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSD-GIFFNILYHAT--CLLSLL---ISVN 118 (265)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~-~~~~~~~ik~~--~~~S~~---~~~G 118 (265)
+++.+++++..++|+.++ ...++||||+.|.+ ...|+||+++.+. .+.++|+||.. |.+|+| +++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~~G 78 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPN---GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKPG 78 (223)
T ss_pred ceEEecCCeEEEEEecCC---CCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCCCC
Confidence 567889999999999876 37899999999998 4689999666554 48999999999 558888 7899
Q ss_pred CEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCe
Q 024591 119 SMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQF 198 (265)
Q Consensus 119 ~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~ 198 (265)
|++.+.||+|+|.+.....++++||||||||||++++++++.... ...+++|+|++|+.+++++.++|+++.+.+++ +
T Consensus 79 ~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-~ 156 (223)
T cd00322 79 DEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGARTPADLLFLDELEELAKEGPN-F 156 (223)
T ss_pred CEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecCCHHHhhHHHHHHHHHHhCCC-e
Confidence 999999999998655556689999999999999999999998763 45789999999999999999999999998777 9
Q ss_pred EEEEEecCCCCCCCCcccCCCH-HHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 199 TIYYVLNQPPESWNGGVGFVSK-EMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 199 ~~~~~~s~~~~~~~~~~g~~~~-~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+++.++++++..+.+..+++.. +.+...... ..+..+|+|||++|++.+++.|.++|+++++||.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~ 222 (223)
T cd00322 157 RLVLALSRESEAKLGPGGRIDREAEILALLPD-DSGALVYICGPPAMAKAVREALVSLGVPEERIHT 222 (223)
T ss_pred EEEEEecCCCCCCCcccceeeHHHHHHhhccc-ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHccc
Confidence 9999998877666555555542 223333222 4578999999999999999999999999999984
No 35
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=2.1e-36 Score=257.13 Aligned_cols=210 Identities=18% Similarity=0.271 Sum_probs=174.2
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCCCCcEEEEEEeccCCCCcc---cCCCC
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHSDGIFFNILYHATCLLSLL---ISVNS 119 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~~~~~~~~~ik~~~~~S~~---~~~G~ 119 (265)
.++|+++.++++++..++++.+ ..++||||+.|++ ...|+||+++. +.+.++|+||..|.+|.+ +++||
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~-----~~~~pGQ~v~l~~~~~~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~l~~Gd 80 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD-----GPVKPGQFFEVSLPKYGEAPISVSGI-GEGYIDLTIRRVGKVTDEVFTLKEGD 80 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC-----CCCCCCcEEEEEecCCCccceecCCC-CCCeEEEEEEeCchhhHHHHcCCCCC
Confidence 6999999999999999888643 4599999999998 45689997764 468899999999888888 89999
Q ss_pred EEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCe
Q 024591 120 MQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQF 198 (265)
Q Consensus 120 ~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~ 198 (265)
+|.|+||+|+ |.++....++++||||||||||+++++++++.+.+...+++|+|++|+.+++++.++|++|.++.
T Consensus 81 ~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~eL~~l~~~~---- 156 (261)
T TIGR02911 81 NLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKGNI---- 156 (261)
T ss_pred EEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHHHHHHhcC----
Confidence 9999999999 76655455799999999999999999999887644457899999999999999999999999753
Q ss_pred EEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEeC
Q 024591 199 TIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 199 ~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~~ 265 (265)
++.++++++.+.|.+..|++.....+..+.+ ..+..+|+|||++|++++++.|+++|+++++||.+
T Consensus 157 ~~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~-~~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~~~ 222 (261)
T TIGR02911 157 NLTLTLDEAEEDYKGNIGLVTKYIPELTLKD-IEEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVS 222 (261)
T ss_pred cEEEEEcCCCCCCcCCeeccCHhHHhccCCC-ccceEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 3444555655667778889986433322222 34578999999999999999999999999999863
No 36
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=2e-35 Score=294.26 Aligned_cols=243 Identities=28% Similarity=0.489 Sum_probs=202.2
Q ss_pred HHHHHHHhhhhccCCCCCCCCeEEEEEEEEE---EecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeee
Q 024591 22 LAIAVGAAYLFSSKKPKDPENFKEFKLVKRL---QLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVG 93 (265)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis 93 (265)
++.-..+.++-.+.-..++..|.+++|.+++ +.++++..++|++|...+.+.|+|||||.|++ ...|+||++
T Consensus 893 iAG~~aa~~~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~ 972 (1167)
T PTZ00306 893 IAGDRAATILQKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPI 972 (1167)
T ss_pred HHHHHHHHHHhccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccC
Confidence 3344444443333334589999999999997 56999999999998765557899999999997 467999954
Q ss_pred c-CCCCcEEEEEEeccCC-CCcc---cCCCCEEEEeeeee----------eeEecCCCCceEEEEEeCCChHHHHHHHHH
Q 024591 94 S-HSDGIFFNILYHATCL-LSLL---ISVNSMQSVANIIG----------RFRYQPGQVRAFGMTAGGSGITPMFQVTRA 158 (265)
Q Consensus 94 ~-~~~~~~~~~~ik~~~~-~S~~---~~~G~~v~i~gp~G----------~~~~~~~~~~~~vlia~GtGIap~~~~l~~ 158 (265)
+ +.+.+.++|+||..++ +|.+ +++||+|.|+||+| .|.++....++++||||||||||+++|+++
T Consensus 973 S~p~~~~~i~l~Vr~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~ 1052 (1167)
T PTZ00306 973 TLPDDLGVISILARGDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRA 1052 (1167)
T ss_pred CCCCCCCeEEEEEEcCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHH
Confidence 4 4456889999987434 8888 99999999999877 355555555789999999999999999999
Q ss_pred HHhCCC--CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEE
Q 024591 159 ILENPN--DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQV 236 (265)
Q Consensus 159 l~~~~~--~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v 236 (265)
++++++ ...+++|+|++|+.+|++|+++|++|.++++++|+++++++++.+.|.+..|+++.+.+++.++....+..+
T Consensus 1053 ~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~v 1132 (1167)
T PTZ00306 1053 ALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLV 1132 (1167)
T ss_pred HHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEE
Confidence 987631 246899999999999999999999999999877999999998777788889999988888887654457789
Q ss_pred EEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 237 LRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 237 ~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
|+|||+.|++.+++.|+++|+++++||+
T Consensus 1133 yiCGP~~mv~~v~~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306 1133 AICGPPVMQRAVKADLLALGYNMELVRT 1160 (1167)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 9999999999999999999999999996
No 37
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=6.1e-36 Score=269.53 Aligned_cols=222 Identities=18% Similarity=0.339 Sum_probs=183.8
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----------------------------------c
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----------------------------------E 85 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----------------------------------~ 85 (265)
+....+++|++++.+++++..++|+.+... ...|+||||+.|++ .
T Consensus 130 ~~~~~~~~V~~~~~ls~~i~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (409)
T PRK05464 130 GVKKWECTVISNDNVATFIKELVLKIPEGE-EVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEP 208 (409)
T ss_pred cceEEEEEEEEcccCCchhheEEEecCCCC-cccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCc
Confidence 334458999999999999999999987532 36799999999975 1
Q ss_pred eEeeeeeecCC-CCcEEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChH
Q 024591 86 IVKMIFVGSHS-DGIFFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGIT 150 (265)
Q Consensus 86 ~~r~ysis~~~-~~~~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIa 150 (265)
..|+||+++.+ +.+.++|+||.. |.+|.+ +++||++.|+||+|+|.+.. ..++++|||||||||
T Consensus 209 ~~R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~-~~~~ivlIAgGtGIa 287 (409)
T PRK05464 209 VIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMA 287 (409)
T ss_pred eeeeeccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC-CCceEEEEEeccChh
Confidence 46999966555 567899999963 337887 89999999999999987753 457999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCC--CCCCCcccCCCHHHHhhhCC
Q 024591 151 PMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCP 228 (265)
Q Consensus 151 p~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~~~~l~~~~~ 228 (265)
|+++++++++...+...+++|+|++|+.+++++.++|+++.+++++ ++++.+++++. +.|.+..|++.....+..+.
T Consensus 288 P~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~ 366 (409)
T PRK05464 288 PMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPN-FKWHVALSDPLPEDNWTGYTGFIHNVLYENYLK 366 (409)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCC-eEEEEEEcCCCCCCCCCCccceeCHHHHHhhhh
Confidence 9999999887653445789999999999999999999999999988 99998887643 45777889998655444432
Q ss_pred C--CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 229 A--PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 229 ~--~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
. ...+..+|+|||+.|++++++.|+++|+++++||.
T Consensus 367 ~~~~~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~ 404 (409)
T PRK05464 367 DHEAPEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILL 404 (409)
T ss_pred hcCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 1 12457899999999999999999999999999985
No 38
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=2.3e-35 Score=249.18 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=169.3
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEecc--CCCCcc
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHAT--CLLSLL 114 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~--~~~S~~ 114 (265)
.|.+++|++++++++++.+++|+.|. ..|+||||++|.+ ...|+||+++.++.+.++|+||.. |.+|.+
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~----~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~ 78 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV----DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPR 78 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC----CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChH
Confidence 68899999999999999999998653 3699999999987 457999987777667899999987 448888
Q ss_pred ---cCCCCEEEEeeee-eeeEecCC-CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 115 ---ISVNSMQSVANII-GRFRYQPG-QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 115 ---~~~G~~v~i~gp~-G~~~~~~~-~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+++||+|.++||. |.|.++.. ..++++||||||||||++++++++... +...+++|+|++|+.+|++|.++|++
T Consensus 79 L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~-~~~~~v~l~~g~r~~~d~~~~~el~~ 157 (248)
T PRK10926 79 LAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL-ERFKNLVLVHAARYAADLSYLPLMQE 157 (248)
T ss_pred HHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh-CCCCcEEEEEeCCcHHHHHHHHHHHH
Confidence 8999999999987 44665543 236899999999999999999998754 34568999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHH----HhhhCC--CCCCCcEEEEeCCHHHHHHHHHHHHH-CCCCC
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEM----IQTHCP--APASDIQVLRCGPPPMNKAMAAHLEA-LGYTS 259 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~----l~~~~~--~~~~~~~v~vCGp~~~~~~~~~~l~~-~gv~~ 259 (265)
|.+++++++++..++++++. +.+..|++++.+ +.+.+. ...++..+|+|||+.|+++++..|.+ .|+++
T Consensus 158 l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~~~~~~ 233 (248)
T PRK10926 158 LEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKETRQMTK 233 (248)
T ss_pred HHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHhcCccc
Confidence 99888644999999987432 333567876411 222211 11346789999999999999999965 66654
No 39
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=258.13 Aligned_cols=205 Identities=18% Similarity=0.282 Sum_probs=168.9
Q ss_pred eEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc---
Q 024591 43 FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL--- 114 (265)
Q Consensus 43 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~--- 114 (265)
..+++|++++++++++..++|+.+. .+.|+||||+.|++ ...|+||+++.+ +.+.++|+|+...+ +|.+
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~---~~~~~~GQfv~l~~~~~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~ 167 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPER---PLRYRAGQHLVLWTAGGVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ 167 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCC---cCCcCCCCEEEEecCCCcccccccCcCCCCCCeEEEEEEEcCCCccchhhhc
Confidence 3579999999999999999998654 37899999999987 568999976554 56789999986533 7877
Q ss_pred cCCCCEEEEeeeeee-eEecCC-CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHH
Q 024591 115 ISVNSMQSVANIIGR-FRYQPG-QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAA 192 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~-~~~~~~-~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~ 192 (265)
+++||+|.+++|.|. |.++.+ ..+++|||||||||||+++++++++..+ ...+++|+|++|+.+|+++.++|++|.+
T Consensus 168 l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~~el~~l~~ 246 (312)
T PRK05713 168 LQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-HQGPIRLLHLARDSAGHYLAEPLAALAG 246 (312)
T ss_pred CCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEEcCchHHhhhHHHHHHHHH
Confidence 899999999999985 666543 3478999999999999999999998763 4468999999999999999999999999
Q ss_pred hCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 193 KYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 193 ~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++++ +++.++.++ .+. +.+.+... ...+..+|+|||+.|++++++.|++.|+++++||.
T Consensus 247 ~~~~-~~~~~~~~~----------~~~-~~l~~~~~-~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~ 305 (312)
T PRK05713 247 RHPQ-LSVELVTAA----------QLP-AALAELRL-VSRQTMALLCGSPASVERFARRLYLAGLPRNQLLA 305 (312)
T ss_pred HCCC-cEEEEEECc----------chh-hhhhhccC-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeee
Confidence 8888 998877643 122 22332211 13457899999999999999999999999999985
No 40
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=1.6e-35 Score=266.53 Aligned_cols=222 Identities=19% Similarity=0.358 Sum_probs=182.5
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----------------------------------c
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----------------------------------E 85 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----------------------------------~ 85 (265)
+....+++|++++++++++.+++|+.+.. .+..|+||||+.|.+ .
T Consensus 126 ~~~~~~~~v~~~~~~s~~i~~l~l~~~~~-~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (405)
T TIGR01941 126 GVKKWECEVISNDNVATFIKELVLKLPDG-ESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEE 204 (405)
T ss_pred ccceeeeEEEEcccccchhheEEEecCCC-ceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCc
Confidence 33445799999999999999999998753 236899999999975 1
Q ss_pred eEeeeeeecCC-CCcEEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChH
Q 024591 86 IVKMIFVGSHS-DGIFFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGIT 150 (265)
Q Consensus 86 ~~r~ysis~~~-~~~~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIa 150 (265)
..|+||+++.+ +.+.++|+||.. |.+|.| +++||++.++||+|.|.+.+ ..++++|||||||||
T Consensus 205 ~~R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~-~~~~lvlIAgGtGIa 283 (405)
T TIGR01941 205 TVRAYSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD-TDAEMVFIGGGAGMA 283 (405)
T ss_pred cceeecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC-CCCCEEEEecCcCcc
Confidence 35999966555 567899999973 337777 89999999999999987753 457899999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCC--CCCCCCcccCCCHHHHhhhCC
Q 024591 151 PMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP--PESWNGGVGFVSKEMIQTHCP 228 (265)
Q Consensus 151 p~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~--~~~~~~~~g~~~~~~l~~~~~ 228 (265)
|+++++++++...+...+++|+|++|+.+++++.++|+++.+++++ ++++.+++++ .+.|.+..|++........+.
T Consensus 284 P~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~ 362 (405)
T TIGR01941 284 PMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPN-FVWHVALSDPQPEDNWTGYTGFIHNVLYENYLK 362 (405)
T ss_pred hHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCC-eEEEEEeCCCCccCCCCCccceeCHHHHHhhhc
Confidence 9999999877643345789999999999999999999999999988 9999888864 356778889988644433332
Q ss_pred C--CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 229 A--PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 229 ~--~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
. ...+..+|+|||+.|++++++.|+++|+++++||.
T Consensus 363 ~~~~~~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~ 400 (405)
T TIGR01941 363 DHDAPEDCEFYMCGPPMMNAAVIKMLEDLGVERENILL 400 (405)
T ss_pred ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 1 12457899999999999999999999999999985
No 41
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=6.9e-35 Score=253.28 Aligned_cols=211 Identities=16% Similarity=0.211 Sum_probs=167.7
Q ss_pred CCCeEEEEEEEEEEec-----CCEEEEEEECCCCCcccCCCCCeEEEEee-c----------eEeeeeeecCC-C----C
Q 024591 40 PENFKEFKLVKRLQLS-----HNVAKFTFELPTPTSVLGLPIGQHISCRK-E----------IVKMIFVGSHS-D----G 98 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~----------~~r~ysis~~~-~----~ 98 (265)
+....+++|++++.++ +++.+++|+.+.. +.|+||||+.|.. . ..|+|||++.+ + .
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~---~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~ 97 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDG 97 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecCCC---CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCC
Confidence 4445589999999999 8999999997754 7899999999976 1 37999977765 2 2
Q ss_pred cEEEEEEecc--------------CC-CCcc---cCCCCEEEEeeeeeeeEecC--CCCceEEEEEeCCChHHHHHHHHH
Q 024591 99 IFFNILYHAT--------------CL-LSLL---ISVNSMQSVANIIGRFRYQP--GQVRAFGMTAGGSGITPMFQVTRA 158 (265)
Q Consensus 99 ~~~~~~ik~~--------------~~-~S~~---~~~G~~v~i~gp~G~~~~~~--~~~~~~vlia~GtGIap~~~~l~~ 158 (265)
..++|+||.. ++ +|.+ +++||+|.|+||+|+|.+.+ +..+++|||||||||||+++|+++
T Consensus 98 ~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~ 177 (307)
T PLN03116 98 KTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRR 177 (307)
T ss_pred CEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHH
Confidence 3799999875 23 7887 89999999999999987643 344689999999999999999998
Q ss_pred HHhCCC----CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhC----CCC
Q 024591 159 ILENPN----DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHC----PAP 230 (265)
Q Consensus 159 l~~~~~----~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~----~~~ 230 (265)
++..+. ...+++|+|++|+.+|++|.++|++|.+++++.+++..+++++.+.|.+..|++.. .+.+.. ...
T Consensus 178 ~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~-~l~~~~~~~~~~~ 256 (307)
T PLN03116 178 MFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQD-KIEEYSDEIFKLL 256 (307)
T ss_pred HHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhh-HHHHHHHHHHhhh
Confidence 876431 13579999999999999999999999999884499999999877777666677764 333321 111
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHH
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEA 254 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~ 254 (265)
..+..+|+|||++|++++...|.+
T Consensus 257 ~~~~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 257 DNGAHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHH
Confidence 246789999999999988766643
No 42
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-35 Score=246.88 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=177.4
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--c----eEeeeeeecCCCCcEEEEEEeccCCCCcc---
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--E----IVKMIFVGSHSDGIFFNILYHATCLLSLL--- 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~----~~r~ysis~~~~~~~~~~~ik~~~~~S~~--- 114 (265)
+..+|+..++.+.++..++.....+ ..+++|||..+++ . .+|||||++..+..+++|.||.-|++|+.
T Consensus 216 y~~~vt~~~r~~~~t~eit~~l~~~---~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~d 292 (438)
T COG4097 216 YLGKVTAPQRGNVDTLEITIGLQGP---WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKD 292 (438)
T ss_pred cceEEechhhcCcchheeecccCCc---ccccCCceEEEEeccccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHH
Confidence 5688999999999988888877665 4499999999999 3 38999988877777999999999998877
Q ss_pred -cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHh
Q 024591 115 -ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAK 193 (265)
Q Consensus 115 -~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~ 193 (265)
+++|++++++||||.|.++... .+.|+||||+||||++|+++.+..+ .+.++++|+|+.|+.++.+|.+||+.+.++
T Consensus 293 nLk~G~k~~vdGPYG~F~~~~g~-~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L~Y~~~n~e~~~y~~eLr~~~qk 370 (438)
T COG4097 293 NLKVGTKLEVDGPYGKFDFERGL-NTQVWIAGGIGITPFISMLFTLAER-KSDPPVHLFYCSRNWEEALYAEELRALAQK 370 (438)
T ss_pred hccCCceEEEecCcceeecccCC-cccEEEecCcCcchHHHHHHhhccc-ccCCceEEEEEecCCchhHHHHHHHHHHhc
Confidence 9999999999999999987644 4599999999999999999999875 456899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 194 YPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 194 ~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
.|+ +.++.+.|. ..|.++.+.+++. ++.+....||+|||+.|+++++..+++.++|-.++|
T Consensus 371 l~~-~~lHiiDSs-------~~g~l~~e~ler~-~~~~~~~sv~fCGP~~m~dsL~r~l~~~~~~i~~~h 431 (438)
T COG4097 371 LPN-VVLHIIDSS-------KDGYLDQEDLERY-PDRPRTRSVFFCGPIKMMDSLRRDLKKQNVPITNFH 431 (438)
T ss_pred CCC-eEEEEecCC-------CCCccCHHHhhcc-ccccCcceEEEEcCHHHHHHHHHHHHHcCCCHHHHH
Confidence 999 877764333 3568888888887 333445589999999999999999999999987765
No 43
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.7e-34 Score=253.95 Aligned_cols=208 Identities=15% Similarity=0.211 Sum_probs=166.9
Q ss_pred eEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee---------ceEeeeeeecCC-----CCcEEEE
Q 024591 43 FKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK---------EIVKMIFVGSHS-----DGIFFNI 103 (265)
Q Consensus 43 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~---------~~~r~ysis~~~-----~~~~~~~ 103 (265)
...++|++.+.++. ++.+++|+.+. .+.|+||||+.|.. ...|+|||++.+ +.+.++|
T Consensus 90 p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~---~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L 166 (367)
T PLN03115 90 PYTGRCLLNTKITGDDAPGETWHMVFSTEG---EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSL 166 (367)
T ss_pred CeEEEEEeecccccCCCCCceEEEEEcCCC---CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEE
Confidence 36789999999887 89999997665 38899999999985 147999977654 3568999
Q ss_pred EEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecC-CCCceEEEEEeCCChHHHHHHHHHHHhCCCC---
Q 024591 104 LYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQP-GQVRAFGMTAGGSGITPMFQVTRAILENPND--- 165 (265)
Q Consensus 104 ~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~-~~~~~~vlia~GtGIap~~~~l~~l~~~~~~--- 165 (265)
+||.. |.+|.| +++||+|.+.||+|+|.+.+ +...++|||||||||||+++++++++.....
T Consensus 167 ~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~ 246 (367)
T PLN03115 167 CVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYK 246 (367)
T ss_pred EEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhcccccc
Confidence 99964 237887 89999999999999965543 3446899999999999999999987543221
Q ss_pred -CcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCC----CC-CCCcEEEEe
Q 024591 166 -KTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP----AP-ASDIQVLRC 239 (265)
Q Consensus 166 -~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~----~~-~~~~~v~vC 239 (265)
..+++|+|++|+.+|++|.++|+++.++++..+++++++|++.+.|.+..|+++. .+.+..+ .. .++..+|+|
T Consensus 247 ~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd-~i~e~~e~l~~~l~~~~~~vYiC 325 (367)
T PLN03115 247 FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT-RMAEYAEELWELLKKDNTYVYMC 325 (367)
T ss_pred CCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh-HHHHHHHHHHhhcccCCeEEEEe
Confidence 3579999999999999999999999998874499999999988888887788874 3332111 01 246899999
Q ss_pred CCHHHHHHHHHHHHH
Q 024591 240 GPPPMNKAMAAHLEA 254 (265)
Q Consensus 240 Gp~~~~~~~~~~l~~ 254 (265)
||++|++.+.+.|.+
T Consensus 326 Gp~~M~~~V~~~l~~ 340 (367)
T PLN03115 326 GLKGMEKGIDDIMVS 340 (367)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999888754
No 44
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=3.2e-34 Score=247.00 Aligned_cols=208 Identities=19% Similarity=0.287 Sum_probs=169.3
Q ss_pred CCeEEEEEEEEEEec-----CCEEEEEEECCCCCcccCCCCCeEEEEee-c---------eEeeeeeecCCC-----CcE
Q 024591 41 ENFKEFKLVKRLQLS-----HNVAKFTFELPTPTSVLGLPIGQHISCRK-E---------IVKMIFVGSHSD-----GIF 100 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~---------~~r~ysis~~~~-----~~~ 100 (265)
.....++|+++++++ +++.+++|+.+. .+.|+||||+.|.. . ..|+|||++.+. .+.
T Consensus 6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~ 82 (286)
T cd06208 6 KNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG---KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKT 82 (286)
T ss_pred CCCeEEEEEeceeccCCCCCcceEEEEEeCCC---cccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCE
Confidence 445569999999999 699999998754 37899999999975 1 269999776542 468
Q ss_pred EEEEEecc------------CCCCcc---cCCCCEEEEeeeeeeeEecC-CCCceEEEEEeCCChHHHHHHHHHHHhCC-
Q 024591 101 FNILYHAT------------CLLSLL---ISVNSMQSVANIIGRFRYQP-GQVRAFGMTAGGSGITPMFQVTRAILENP- 163 (265)
Q Consensus 101 ~~~~ik~~------------~~~S~~---~~~G~~v~i~gp~G~~~~~~-~~~~~~vlia~GtGIap~~~~l~~l~~~~- 163 (265)
++|+||.. |.+|.| +++||+|.++||+|+|.+.+ +..++++||||||||||+++++++++...
T Consensus 83 l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~ 162 (286)
T cd06208 83 LSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKH 162 (286)
T ss_pred EEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhh
Confidence 99999987 447777 89999999999999976654 33468999999999999999999987651
Q ss_pred ---CCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhh-------CCCCCCC
Q 024591 164 ---NDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTH-------CPAPASD 233 (265)
Q Consensus 164 ---~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~-------~~~~~~~ 233 (265)
....+++|+|++|+.+++++.++|++|.+++++.++++++++++.+.|.+..|+++. .+.+. +. ..+
T Consensus 163 ~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~-~i~~~~~~l~~~l~--~~~ 239 (286)
T cd06208 163 ADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQD-RIAEYAEEIWNLLD--KDN 239 (286)
T ss_pred cccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhh-HHHHhHHHHHHHHh--cCC
Confidence 234689999999999999999999999998875599999999877777777788774 33321 22 245
Q ss_pred cEEEEeCCHHHHHHHHHHHHH
Q 024591 234 IQVLRCGPPPMNKAMAAHLEA 254 (265)
Q Consensus 234 ~~v~vCGp~~~~~~~~~~l~~ 254 (265)
..+|+|||++|++.++..|.+
T Consensus 240 ~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 240 THVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred cEEEEeCCchHHHHHHHHHHH
Confidence 689999999999999999976
No 45
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=2.9e-34 Score=237.80 Aligned_cols=198 Identities=23% Similarity=0.283 Sum_probs=159.6
Q ss_pred ecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCC-CCcEEEEEEeccCCCCcc----cCCCCEEEE
Q 024591 54 LSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHS-DGIFFNILYHATCLLSLL----ISVNSMQSV 123 (265)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~-~~~~~~~~ik~~~~~S~~----~~~G~~v~i 123 (265)
++.++..++|+.+.+. ..++||||+.|++ ...|+||+++.+ +.+.++|+||..|.+|.+ +++||++.|
T Consensus 5 ~~~~~~~i~l~~~~~~--~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~~G~~v~i 82 (216)
T cd06198 5 EVRPTTTLTLEPRGPA--LGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKPGTRVTV 82 (216)
T ss_pred EecceEEEEEeeCCCC--CCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCCCCCEEEE
Confidence 4668888999866642 7799999999998 468999966554 457999999999888877 789999999
Q ss_pred eeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEE
Q 024591 124 ANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYV 203 (265)
Q Consensus 124 ~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~ 203 (265)
+||+|.|.++.. .++++||||||||||++++++++...+ ...+++++|++|+.+++++.++|+++.+++ + ++++.+
T Consensus 83 ~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~-~~~~~~ 158 (216)
T cd06198 83 EGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVFLDELRALAAAA-G-VVLHVI 158 (216)
T ss_pred ECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEECCHHHhhhHHHHHHHHHhc-C-eEEEEE
Confidence 999999887654 689999999999999999999998763 357999999999999999999999999886 5 777765
Q ss_pred ecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 204 LNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 204 ~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
.++. ..+.+.. ..+...... ..+..+|+|||+.|++++++.|++.|+++++||.
T Consensus 159 ~~~~-~~~~~~~-----~~~~~~~~~-~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~ 212 (216)
T cd06198 159 DSPS-DGRLTLE-----QLVRALVPD-LADADVWFCGPPGMADALEKGLRALGVPARRFHY 212 (216)
T ss_pred eCCC-Ccccchh-----hhhhhcCCC-cCCCeEEEECcHHHHHHHHHHHHHcCCChHhcch
Confidence 5432 2221111 111122222 3567899999999999999999999999999984
No 46
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=8.2e-34 Score=244.59 Aligned_cols=237 Identities=18% Similarity=0.226 Sum_probs=187.0
Q ss_pred CchhhhhccchhhHHHHHHHHHHHHHHHhhhhccCCCCCCCCeEEEEEEEEEEec----CCEEEEEEECCCC----Cccc
Q 024591 1 MDMEYLQNLDVQLLVGGAVAVLAIAVGAAYLFSSKKPKDPENFKEFKLVKRLQLS----HNVAKFTFELPTP----TSVL 72 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~----~~~~ 72 (265)
+||-+.+++|++.|-.|.-+|...+... ......+....+.+++|++++.++ +++..++|+.+.. ....
T Consensus 6 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 82 (289)
T cd06201 6 LPLETIDRQSTQAFARWGRDLGEALGLD---LPLDHKKRLPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLP 82 (289)
T ss_pred CCcEEEcCCCHHHHHHHHHHHHHHhCCC---ccccccccCCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCC
Confidence 4888999999999999999888875543 222333346678899999999999 5999999998762 1246
Q ss_pred CCCCCeEEEEee---ceEeeeeeecCCCCcEEEEEEecc--CCCCcc---cCCCCEEEEee-eeeeeEecCCCCceEEEE
Q 024591 73 GLPIGQHISCRK---EIVKMIFVGSHSDGIFFNILYHAT--CLLSLL---ISVNSMQSVAN-IIGRFRYQPGQVRAFGMT 143 (265)
Q Consensus 73 ~~~pGq~v~l~~---~~~r~ysis~~~~~~~~~~~ik~~--~~~S~~---~~~G~~v~i~g-p~G~~~~~~~~~~~~vli 143 (265)
.|+||||+.|.. ...|+||+++.++++.++|+||.+ |.+|.+ +++||+|.+.+ |.|.|.++ ...++++||
T Consensus 83 ~~~pGQ~v~v~~~g~~~~R~YSias~p~~g~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 83 SFEAGDLLGILPPGSDVPRFYSLASSSSDGFLEICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CcCccCEEEEecCCCCCCceEecCCCCCCCeEEEEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccCC-CCCCCEEEE
Confidence 799999999986 457999977766778999999985 338888 89999999985 78888765 345789999
Q ss_pred EeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCc-ccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCH--
Q 024591 144 AGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYE-DILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSK-- 220 (265)
Q Consensus 144 a~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~-- 220 (265)
||||||||+++++++... ..+++|+|++|+.+ |++|.++|+++.+++++ +++..+++++.. .|.++.
T Consensus 162 AgGtGIaP~~s~l~~~~~----~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~-~~~~~~~s~~~~-----~g~v~~~l 231 (289)
T cd06201 162 GAGTGIAPLAGFIRANAA----RRPMHLYWGGRDPASDFLYEDELDQYLADGRL-TQLHTAFSRTPD-----GAYVQDRL 231 (289)
T ss_pred ecCcCHHHHHHHHHhhhc----cCCEEEEEEecCcccchHHHHHHHHHHHcCCC-ceEEEEECCCCC-----cccchhHH
Confidence 999999999999998632 36899999999985 89999999999988877 788878876532 233332
Q ss_pred ----HHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHH
Q 024591 221 ----EMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEA 254 (265)
Q Consensus 221 ----~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~ 254 (265)
+.+...+. ++..+|+|||+.|++++.+.|.+
T Consensus 232 ~~~~~~l~~~~~---~~~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 232 RADAERLRRLIE---DGAQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred HHhHHHHHHHHH---CCcEEEEECCHHHHHHHHHHHHH
Confidence 12222222 36789999999999999988865
No 47
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=1.1e-33 Score=233.42 Aligned_cols=197 Identities=23% Similarity=0.319 Sum_probs=158.6
Q ss_pred EEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC---CCcc----cCCC
Q 024591 49 VKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL---LSLL----ISVN 118 (265)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~---~S~~----~~~G 118 (265)
++++.+++++.+++|+.+.......|+||||+.|++ ...|+||+++.+ +.+.++|+||.+++ +|.| +++|
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~~~G 80 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNGLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELLRVG 80 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCCCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcCCCC
Confidence 368899999999999988764334899999999998 578999966554 45899999998864 5666 6889
Q ss_pred CEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCe
Q 024591 119 SMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQF 198 (265)
Q Consensus 119 ~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~ 198 (265)
|++.+.||+|.|.+.+ ..+++++||+||||||++++++++.+.. .+++++|++|+.+++++.++|+++. ..+ +
T Consensus 81 d~v~i~gP~g~f~~~~-~~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~--~~~-~ 153 (211)
T cd06185 81 DELEVSAPRNLFPLDE-AARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGRSREDAAFLDELAALP--GDR-V 153 (211)
T ss_pred CEEEEcCCccCCcCCC-CCCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeCCCcchhHHHHHhhhc--CCc-E
Confidence 9999999999988754 3579999999999999999999988642 5899999999999999999999987 333 6
Q ss_pred EEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 199 TIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 199 ~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++. .+... ++.. +.+.+.....+..+|+|||+.|++++++.|+++|+++++||.
T Consensus 154 ~~~--~~~~~-------~~~~---~~~~~~~~~~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~ 207 (211)
T cd06185 154 HLH--FDDEG-------GRLD---LAALLAAPPAGTHVYVCGPEGMMDAVRAAAAALGWPEARLHF 207 (211)
T ss_pred EEE--ECCCC-------CccC---HHHHhccCCCCCEEEEECCHHHHHHHHHHHHHcCCChhheEe
Confidence 654 33221 2333 222222223467899999999999999999999999999985
No 48
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=100.00 E-value=3.9e-33 Score=235.68 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=161.6
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeec-CCCCcEEEEEEeccCCCCcc---cCCC
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGS-HSDGIFFNILYHATCLLSLL---ISVN 118 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~-~~~~~~~~~~ik~~~~~S~~---~~~G 118 (265)
++|++++++++++..++|+.|.. ...++||||++|++ ...|+||+++ +++.+.++|+||..|.+|.+ +++|
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~--~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G 78 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLI--AKKAKPGQFVIVRADEKGERIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEG 78 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhh--hccCCCCcEEEEEcCCCCCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCC
Confidence 47899999999999999998653 35799999999997 4679999554 45778999999999888877 8899
Q ss_pred CEE-EEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCC
Q 024591 119 SMQ-SVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQ 197 (265)
Q Consensus 119 ~~v-~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~ 197 (265)
+++ .++||+|.+.+.. ..++++|||||+||||++++++++.+.+ .+++|+|++|+.+++++.++|.++.++
T Consensus 79 ~~v~~i~gP~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~---- 150 (248)
T cd06219 79 DKIHDVVGPLGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGARTKDLVILEDEFRAVSDE---- 150 (248)
T ss_pred CEeeeeecCCCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHHhhcCe----
Confidence 999 6999999976543 3579999999999999999999988753 689999999999999999999999743
Q ss_pred eEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 198 FTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 198 ~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
. ... ++ +.|.+..|++.+ .+.+.+++......+|+|||+.|++.+++.|+++|++.
T Consensus 151 ~--~~~-~~--~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~ 206 (248)
T cd06219 151 L--IIT-TD--DGSYGEKGFVTD-PLKELIESGEKVDLVIAIGPPIMMKAVSELTRPYGIPT 206 (248)
T ss_pred E--EEE-eC--CCCCCccccchH-HHHHHHhccCCccEEEEECCHHHHHHHHHHHHHcCCCE
Confidence 2 122 22 235556778774 56666533234568999999999999999999999873
No 49
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=100.00 E-value=5e-33 Score=238.89 Aligned_cols=197 Identities=18% Similarity=0.255 Sum_probs=161.7
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeec-CCCCcEEEEEEeccCCCCcc---cCCC
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGS-HSDGIFFNILYHATCLLSLL---ISVN 118 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~-~~~~~~~~~~ik~~~~~S~~---~~~G 118 (265)
++|++++++++++..++|+.|.. ...++||||++|++ ...||||+++ +++++.++|+||..|.+|.+ +++|
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~--~~~~~pGQfv~l~~~~~~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~G 79 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRV--AKKAKPGQFVIVRIDEKGERIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEG 79 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchh--hccCCCCeEEEEEeCCCCCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCC
Confidence 57999999999999999987753 25799999999998 4578999654 55678999999999888887 8999
Q ss_pred CEE-EEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCC
Q 024591 119 SMQ-SVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQ 197 (265)
Q Consensus 119 ~~v-~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~ 197 (265)
|++ .|.||+|++.... ..+++++||||+||||++++++++.+.+ .+++++|++|+.+|+++.++|+++.++
T Consensus 80 d~v~~i~GP~G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r~~~d~~~~~el~~~~~~---- 151 (281)
T PRK06222 80 DSILDVVGPLGKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGARNKDLLILEDEMKAVSDE---- 151 (281)
T ss_pred CEEeeEEcCCCCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecCCHHHhhcHHHHHhhCCe----
Confidence 999 7999999965433 3479999999999999999999988663 589999999999999999999987743
Q ss_pred eEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 198 FTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 198 ~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
+. . .+ ++.|.+..|++++ .+++.+++......||+|||+.|++++.+.+++.|++
T Consensus 152 ~~--v-~~--~d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~ 206 (281)
T PRK06222 152 LY--V-TT--DDGSYGRKGFVTD-VLKELLESGKKVDRVVAIGPVIMMKFVAELTKPYGIK 206 (281)
T ss_pred EE--E-Ec--CCCCcCcccchHH-HHHHHhhcCCCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 21 1 22 2356677888885 5666655432246899999999999999999999986
No 50
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=1.1e-32 Score=232.66 Aligned_cols=196 Identities=21% Similarity=0.362 Sum_probs=160.9
Q ss_pred EEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeecCC-CCcEEEEEEeccCCCCcc---cCC
Q 024591 48 LVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGSHS-DGIFFNILYHATCLLSLL---ISV 117 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~~~-~~~~~~~~ik~~~~~S~~---~~~ 117 (265)
|++++.+++++.+++|+.+.. ...|+||||+.|++ ...|+||+++.+ +.+.++|+|+..+.+|.+ +++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~ 78 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI--AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSELKA 78 (246)
T ss_pred CcceeEecCCeEEEEEeCcch--hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcCCC
Confidence 568899999999999998763 47899999999998 257999966544 678999999999888888 899
Q ss_pred CCEEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCC
Q 024591 118 NSMQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPD 196 (265)
Q Consensus 118 G~~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~ 196 (265)
||+|.|.||+|+ |.++ +..++++||||||||||++++++++...+ .+++|+|++|+.+++++.++|++|..
T Consensus 79 Gd~v~i~gP~G~~~~~~-~~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~~eL~~l~~---- 150 (246)
T cd06218 79 GDELDVLGPLGNGFDLP-DDDGKVLLVGGGIGIAPLLFLAKQLAERG---IKVTVLLGFRSADDLFLVEEFEALGA---- 150 (246)
T ss_pred CCEEEEEecCCCCcCCC-CCCCcEEEEecccCHHHHHHHHHHHHhcC---CceEEEEEccchhhhhhHHHHHhhCC----
Confidence 999999999997 6554 34589999999999999999999998742 68999999999999999999998852
Q ss_pred CeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCC
Q 024591 197 QFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSE 260 (265)
Q Consensus 197 ~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~ 260 (265)
++... ++ ..|.+..|++.+ .+.+...+ ..+..||+|||+.|+++++..|++.|++..
T Consensus 151 --~~~~~-~~--~~~~~~~g~v~~-~l~~~~~~-~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~ 207 (246)
T cd06218 151 --EVYVA-TD--DGSAGTKGFVTD-LLKELLAE-ARPDVVYACGPEPMLKAVAELAAERGVPCQ 207 (246)
T ss_pred --cEEEE-cC--CCCCCcceehHH-HHHHHhhc-cCCCEEEEECCHHHHHHHHHHHHhcCCCEE
Confidence 22222 22 235556778875 56555543 257899999999999999999999999843
No 51
>PRK05802 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=238.04 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=166.2
Q ss_pred hhhccCCCCCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeec-CCCCcEEEE
Q 024591 30 YLFSSKKPKDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGS-HSDGIFFNI 103 (265)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~-~~~~~~~~~ 103 (265)
|..+.+|+|.+...+.++|++++++++++..++|+.|.......++||||++|++ ...||||+++ +.+.+.++|
T Consensus 51 ~~~~~~~~~~~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l 130 (320)
T PRK05802 51 FIWNGNKAKEGRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKV 130 (320)
T ss_pred hhhccchhcCccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEE
Confidence 4557888889999999999999999999999999987642224579999999997 3469999654 456789999
Q ss_pred EEeccCCCCcc---cCCCCEEEEeeeeee--eEec---CCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEee
Q 024591 104 LYHATCLLSLL---ISVNSMQSVANIIGR--FRYQ---PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYAN 175 (265)
Q Consensus 104 ~ik~~~~~S~~---~~~G~~v~i~gp~G~--~~~~---~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~ 175 (265)
+|+..|.+|++ +++||++.|.||+|+ |.+. ....+++++||||+||||++++++++++++ .+++++|++
T Consensus 131 ~ik~~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---~~v~li~g~ 207 (320)
T PRK05802 131 AIEIRGVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---NKIIVIIDK 207 (320)
T ss_pred EEEecChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC---CcEEEEEeC
Confidence 99998888888 899999999999965 5442 233468999999999999999999998764 489999999
Q ss_pred CCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHH-
Q 024591 176 VTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEA- 254 (265)
Q Consensus 176 r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~- 254 (265)
|+.+++++.++|+++..+. .+..++++.+.++ +..|.+. +.+++ .+...||+|||+.|++++.+.+.+
T Consensus 208 r~~~~~~~~~el~~~~~~~----~~~~~~ddG~~~~-~~~g~v~-----~~l~~-~~~~~vy~CGP~~M~k~v~~~l~~~ 276 (320)
T PRK05802 208 GPFKNNFIKEYLELYNIEI----IELNLLDDGELSE-EGKDILK-----EIIKK-EDINLIHCGGSDILHYKIIEYLDKL 276 (320)
T ss_pred CCHHHHHHHHHHHHhhCce----EEEEecccCCCCc-cccchHH-----HHhcC-CCCCEEEEECCHHHHHHHHHHHhhh
Confidence 9999999999999987542 2222222211111 1233333 33332 134679999999999999999988
Q ss_pred -CCCC
Q 024591 255 -LGYT 258 (265)
Q Consensus 255 -~gv~ 258 (265)
.|++
T Consensus 277 ~~~i~ 281 (320)
T PRK05802 277 NEKIK 281 (320)
T ss_pred cCCce
Confidence 5553
No 52
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=4.9e-32 Score=228.83 Aligned_cols=203 Identities=24% Similarity=0.401 Sum_probs=172.0
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEec--cCCCCcc---cC
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHA--TCLLSLL---IS 116 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~--~~~~S~~---~~ 116 (265)
.++|.+++.+++++..++|+.+... +.++||||+.|+. ...||||+++.+ +.+.++|.|+. .|.+|.+ ++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~--~~~~pGQfv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~k 86 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA--LTFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGLK 86 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc--cccCCCcEEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhcc
Confidence 5899999999999999999998875 7899999999999 899999966554 45655555555 5668877 89
Q ss_pred CCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCC
Q 024591 117 VNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPD 196 (265)
Q Consensus 117 ~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~ 196 (265)
+||.+.+.||+|++...++..+++++||||||+||++++++++..++ +..+++++|++|+++|+++.++++++..+
T Consensus 87 ~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~dl~~~~el~~~~~~--- 162 (252)
T COG0543 87 EGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAKDLLLLDELEELAEK--- 162 (252)
T ss_pred CCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChhhcccHHHHHHhhcC---
Confidence 99999999999996555545566999999999999999999999876 67899999999999999999999999964
Q ss_pred CeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCC
Q 024591 197 QFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSE 260 (265)
Q Consensus 197 ~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~ 260 (265)
+++.+++ ++|.|..|.+..+.+.+.... +...+|+|||+.|++++.+.+...|++..
T Consensus 163 --~~~~~~~---~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~M~~~v~~~~~~~g~~~~ 219 (252)
T COG0543 163 --EVHPVTD---DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPAMVKAVREKLKEYGVPIS 219 (252)
T ss_pred --cEEEEEC---CCCCccCcceeHHHHhhhccc--cCCEEEEECCHHHHHHHHHHHHhcCCchh
Confidence 3444444 678889999966777777653 57899999999999999999999997554
No 53
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=100.00 E-value=4.4e-32 Score=228.71 Aligned_cols=198 Identities=18% Similarity=0.169 Sum_probs=157.9
Q ss_pred EEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeee-cCCCCcEEEEEEeccCCCCcc---cCCC
Q 024591 48 LVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVG-SHSDGIFFNILYHATCLLSLL---ISVN 118 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis-~~~~~~~~~~~ik~~~~~S~~---~~~G 118 (265)
|++++++++++.+++|+.|.. ...++||||+.|.+ ...|+||++ .+++.++++|+|+..|.+|+| +++|
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G 78 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA--ARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPG 78 (243)
T ss_pred CceEEEecCCEEEEEEEccch--hhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCC
Confidence 468899999999999998764 36799999999997 478999955 455778999999998888888 8999
Q ss_pred CEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCe
Q 024591 119 SMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQF 198 (265)
Q Consensus 119 ~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~ 198 (265)
|++.|.||+|++.......+++++|||||||||++++++++...+ .+++++|++|+.+|+++.++|+++. . .
T Consensus 79 ~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~~~----~-~ 150 (243)
T cd06192 79 EKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAKKAKEEFLDEYFELPA----D-V 150 (243)
T ss_pred CEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecCcHHHHHHHHHHHhhc----C-e
Confidence 999999999996554444579999999999999999999998752 6999999999999999999998872 1 2
Q ss_pred EEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 199 TIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 199 ~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
+.+ +++ +.|.+..|++... . ...+. .....+|+|||+.|+++++..|++.| +..+++
T Consensus 151 -~~~-~~~--~~~~~~~g~v~~~-~-~~~~~-~~~~~v~icGp~~mv~~~~~~l~~~g-~~~~~~ 207 (243)
T cd06192 151 -EIW-TTD--DGELGLEGKVTDS-D-KPIPL-EDVDRIIVAGSDIMMKAVVEALDEWL-QLIKAS 207 (243)
T ss_pred -EEE-Eec--CCCCccceeechh-h-hhhhc-ccCCEEEEECCHHHHHHHHHHHHhhc-CCceEE
Confidence 222 222 3455666777642 1 12221 23568999999999999999999998 555554
No 54
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=5.3e-32 Score=229.07 Aligned_cols=194 Identities=16% Similarity=0.273 Sum_probs=160.0
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEeccCCCCcc--
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHATCLLSLL-- 114 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~~~~S~~-- 114 (265)
.++.++|++++++++++..++|+.+. ...|+||||+.|.+ ...|+||+++.+ .++++|+|+..|.+|.+
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~ 78 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGEK---VFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLS 78 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCcc---ccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHh
Confidence 56789999999999999999999653 47899999999998 268999977666 78999999998888877
Q ss_pred -cCCCCEEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHH
Q 024591 115 -ISVNSMQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAA 192 (265)
Q Consensus 115 -~~~G~~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~ 192 (265)
+++|++|.|.||+|. |.++. ..+++++|||||||||++++++++...+ .+++++|++|+.+|+++.++|+++.
T Consensus 79 ~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~~~- 153 (250)
T PRK00054 79 KLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGARTKDEVIFEEEFAKVG- 153 (250)
T ss_pred cCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcCCHHHhhhHHHHHhcC-
Confidence 899999999999998 76653 4579999999999999999999998653 5799999999999999999999843
Q ss_pred hCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 193 KYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 193 ~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
. +. . .+ ++.|.+..|++.+ .+.+.. .+...||+|||+.|++.+++.|+++|+
T Consensus 154 ---~-~~--~-~~--~~~~~~~~g~v~~-~l~~~~---~~~~~vyvCGp~~m~~~v~~~l~~~Gv 205 (250)
T PRK00054 154 ---D-VY--V-TT--DDGSYGFKGFVTD-VLDELD---SEYDAIYSCGPEIMMKKVVEILKEKKV 205 (250)
T ss_pred ---C-EE--E-Ee--cCCCCCcccchhH-hHhhhc---cCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 1 21 1 12 2335556777775 444433 235589999999999999999999998
No 55
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=6e-32 Score=226.42 Aligned_cols=190 Identities=15% Similarity=0.190 Sum_probs=156.7
Q ss_pred EEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCCCCcEEEEEEeccCCCCcc---cCCCCEE
Q 024591 47 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHSDGIFFNILYHATCLLSLL---ISVNSMQ 121 (265)
Q Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~~~~~~~~~ik~~~~~S~~---~~~G~~v 121 (265)
+|++++++++++..++|+.+ ..|+||||+.|.. ...|+||+++.+ +.++|+|+..|.+|.| +++||++
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~-----~~~~pGQ~v~l~~~~~~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~l~~Gd~v 74 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD-----FDFKPGQFVMVWVPGVDEIPMSLSYID--GPNSITVKKVGEATSALHDLKEGDKL 74 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC-----CCCCCCceEEEEeCCCCcceeEEecCC--CeEEEEEEecChHHHHHHhcCCCCEE
Confidence 68999999999999999864 3699999999997 346999987776 7899999998888888 8999999
Q ss_pred EEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEE
Q 024591 122 SVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTI 200 (265)
Q Consensus 122 ~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~ 200 (265)
.+.||+|. |.++ .+++++|||||||||+++++++++.. .+++|+|++|+.+|+++.++|+++ .. +.+
T Consensus 75 ~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~~~eL~~~----~~-~~~ 142 (233)
T cd06220 75 GIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLFLDRLRKS----DE-LIV 142 (233)
T ss_pred EEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChhHHHHhhC----Cc-EEE
Confidence 99999998 6553 47999999999999999999998764 689999999999999999999971 12 332
Q ss_pred EEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 201 YYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 201 ~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
..+ +.|.+..|++.+ .+++... .....+|+|||+.|++.+++.|++.|+ +.+||.
T Consensus 143 --~~~---~~~~~~~g~~~~-~l~~~~~--~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~ 197 (233)
T cd06220 143 --TTD---DGSYGFKGFVTD-LLKELDL--EEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSL 197 (233)
T ss_pred --EEe---CCCCcccceehH-HHhhhcc--cCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEe
Confidence 222 235556788875 4554432 234689999999999999999999999 677763
No 56
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.5e-31 Score=240.29 Aligned_cols=204 Identities=15% Similarity=0.213 Sum_probs=157.2
Q ss_pred CeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee---------ceEeeeeeecCCC-----CcEEE
Q 024591 42 NFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK---------EIVKMIFVGSHSD-----GIFFN 102 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~---------~~~r~ysis~~~~-----~~~~~ 102 (265)
....++|++++.+++ ++.+++|+.+.. .+.|+||||+.|.. ...|+|||++.++ .+.++
T Consensus 141 ~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~--~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~ 218 (411)
T TIGR03224 141 APITATVVGNYRLTDEDASSDIHHIVLDFGSH--PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLA 218 (411)
T ss_pred CCeEEEEeeeEEccCCCCCCceEEEEEeCCCC--cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEE
Confidence 335699999999954 999999998764 47899999999986 1579999776542 24799
Q ss_pred EEEecc----------CCCCcc---cCCCCEEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhC--CCCC
Q 024591 103 ILYHAT----------CLLSLL---ISVNSMQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILEN--PNDK 166 (265)
Q Consensus 103 ~~ik~~----------~~~S~~---~~~G~~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~--~~~~ 166 (265)
|+||.. |.+|+| +++||+|.+.||+|+ |.++.....++|||||||||||+++|++++... .+..
T Consensus 219 l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~ 298 (411)
T TIGR03224 219 LTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEG 298 (411)
T ss_pred EEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCC
Confidence 999987 338888 899999999999999 444433347899999999999999999998752 1235
Q ss_pred cEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhh-------hCCCCCCCcEEEEe
Q 024591 167 TKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQT-------HCPAPASDIQVLRC 239 (265)
Q Consensus 167 ~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~~v~vC 239 (265)
.+++|+|++|+.++++|.++|++|.+.+ +++++.+++..+. ..|.++. .+.+ .+. ..+..||+|
T Consensus 299 ~~v~L~~G~Rt~~dl~y~~eL~~l~~~~---~~~~~~~sr~~~~---~~g~V~d-~l~~~~~~v~~ll~--~~~~~vYiC 369 (411)
T TIGR03224 299 GKLMLFFGARTKEELPYFGPLQKLPKDF---IDINFAFSRTPEQ---PKRYVQD-AIRERAADVAALLK--DPNTYIYIC 369 (411)
T ss_pred CCEEEEEecCccccchHHHHHHHHHhcC---ceEEEEeccCCcc---CcccHhh-HHHHhHHHHHHHHh--cCCcEEEEE
Confidence 7899999999999999999999998776 4455577765432 3456553 2222 222 235789999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 024591 240 GPPPMNKAMAAHLEALG 256 (265)
Q Consensus 240 Gp~~~~~~~~~~l~~~g 256 (265)
||+.|++.+...|.+.+
T Consensus 370 Gp~~M~~~v~~~L~~~~ 386 (411)
T TIGR03224 370 GLKGMEEGVLDAFRDVC 386 (411)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999888888886654
No 57
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=100.00 E-value=1.7e-31 Score=221.65 Aligned_cols=176 Identities=26% Similarity=0.350 Sum_probs=142.4
Q ss_pred EEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-c--------------------eEeeeeeecCCCC----cEEEEE
Q 024591 50 KRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-E--------------------IVKMIFVGSHSDG----IFFNIL 104 (265)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~--------------------~~r~ysis~~~~~----~~~~~~ 104 (265)
+++.+++++.+++|+.+.+...+.|+||||+.|.+ . ..|+||+++.++. +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 57889999999999988765568999999999986 1 3599997766532 789999
Q ss_pred EeccCCCCcc----c-CC---CCEEEEeeeeeeeEecC---CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEE
Q 024591 105 YHATCLLSLL----I-SV---NSMQSVANIIGRFRYQP---GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIY 173 (265)
Q Consensus 105 ik~~~~~S~~----~-~~---G~~v~i~gp~G~~~~~~---~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~ 173 (265)
||..|.+|++ + +. |+++.+.||+|.|.++. +..++++||||||||||+++++++++...+...+++|+|
T Consensus 82 vk~~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l~~ 161 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITLLW 161 (220)
T ss_pred EEeCCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEEEE
Confidence 9999889988 2 23 99999999999998764 345789999999999999999999986533457899999
Q ss_pred eeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q 024591 174 ANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLE 253 (265)
Q Consensus 174 ~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~ 253 (265)
++|+.+++++.++|.++.+. . +......+ ..+|+|||++|++.+++.++
T Consensus 162 ~~r~~~~~~~~~el~~~~~~--~-~~~~~~~~----------------------------~~v~~CGP~~m~~~~~~~~~ 210 (220)
T cd06197 162 SLREDDLPLVMDTLVRFPGL--P-VSTTLFIT----------------------------SEVYLCGPPALEKAVLEWLE 210 (220)
T ss_pred EecchhhHHHHHHHHhccCC--c-eEEEEEEe----------------------------ccEEEECcHHHHHHHHHHhh
Confidence 99999999999999776531 1 22211110 06999999999999999998
Q ss_pred HCC
Q 024591 254 ALG 256 (265)
Q Consensus 254 ~~g 256 (265)
+..
T Consensus 211 ~~~ 213 (220)
T cd06197 211 GKK 213 (220)
T ss_pred hce
Confidence 763
No 58
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.98 E-value=4.1e-31 Score=225.20 Aligned_cols=192 Identities=16% Similarity=0.197 Sum_probs=153.7
Q ss_pred CCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCCC--CcEEEEEEecc-----------CCCCcc---cC
Q 024591 56 HNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHSD--GIFFNILYHAT-----------CLLSLL---IS 116 (265)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~~--~~~~~~~ik~~-----------~~~S~~---~~ 116 (265)
.++.+++|+.+.. ....|+||||+.|.+ ...|+||+++.++ .+.++|+|+.. |.+|.+ ++
T Consensus 15 ~~v~~l~l~~~~~-~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk 93 (267)
T cd06182 15 RSTRHLEFDLSGN-SVLKYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQ 93 (267)
T ss_pred CceEEEEEecCCC-CcCccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCC
Confidence 3799999998751 247899999999997 4689999777654 48999999986 447777 89
Q ss_pred CCCEEEEeeeee-eeEecCCCCceEEEEEeCCChHHHHHHHHHHHhC---CCCCcEEEEEEeeCCC-cccccHHHHHHHH
Q 024591 117 VNSMQSVANIIG-RFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEN---PNDKTKVHLIYANVTY-EDILLKEELDGFA 191 (265)
Q Consensus 117 ~G~~v~i~gp~G-~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~---~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~ 191 (265)
+||.|.+.||+| .|.++.+..+++|||||||||||+++++++++.. .....+++|+|++|+. +|+++.++|+++.
T Consensus 94 ~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~ 173 (267)
T cd06182 94 LGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEAL 173 (267)
T ss_pred CCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHH
Confidence 999999999999 7988765568999999999999999999999862 2235789999999999 9999999999999
Q ss_pred HhCCCCeEEEEEecCCCCCCCCcccCCCHH------HHhhhCCCCCCCcEEEEeCCHH-HHHHHHHHHHHC
Q 024591 192 AKYPDQFTIYYVLNQPPESWNGGVGFVSKE------MIQTHCPAPASDIQVLRCGPPP-MNKAMAAHLEAL 255 (265)
Q Consensus 192 ~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~------~l~~~~~~~~~~~~v~vCGp~~-~~~~~~~~l~~~ 255 (265)
+++++ +++..++++++.. ..|.++.. .+.+.+. ++..||+|||+. |++++.+.|.++
T Consensus 174 ~~~~~-~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~---~~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 174 KDGAL-TRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN---EGAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred hCCCc-ceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh---cCCEEEEECCcccchHHHHHHHHHH
Confidence 87766 8999999875432 12344321 1222232 345899999999 999999999876
No 59
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.97 E-value=8.8e-31 Score=220.80 Aligned_cols=187 Identities=13% Similarity=0.141 Sum_probs=146.2
Q ss_pred CEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCCCCcEEEEEEeccCC-------CCcc----cCCCCEEE
Q 024591 57 NVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHSDGIFFNILYHATCL-------LSLL----ISVNSMQS 122 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~~~~~~~~~ik~~~~-------~S~~----~~~G~~v~ 122 (265)
++.+++|+.++. ...|+||||+.|.. ...|+|||++.++.+.++|+||..++ +|.+ +++|++|.
T Consensus 17 ~v~~l~l~~~~~--~~~f~pGQ~v~l~~~~~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~~Gd~v~ 94 (245)
T cd06200 17 PLWRLRLTPPDA--GAQWQAGDIAEIGPRHPLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHAPIGASVA 94 (245)
T ss_pred ceEEEEEecCCC--CCCccCCcEEEecCCCCCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCCCCCCEEE
Confidence 589999987742 47899999999987 46799998877767889999998753 7777 58999999
Q ss_pred Eeeeee-eeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEE
Q 024591 123 VANIIG-RFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTI 200 (265)
Q Consensus 123 i~gp~G-~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~ 200 (265)
+.||.| .|.++. ..+++|||||||||||++++++++...+ ..+++|+|++|+. +|++|.+++++|.+++++ +++
T Consensus 95 i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~-~~~ 170 (245)
T cd06200 95 LRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQAAHDFFCREELEAWQAAGHL-ARL 170 (245)
T ss_pred EEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCccccHhHHHHHHHHHHCCCc-ceE
Confidence 999866 576643 4478999999999999999999988653 3578999999998 489999999999988877 888
Q ss_pred EEEecCCCCCCCCcccCCCHHHHhhhCCC----CCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 201 YYVLNQPPESWNGGVGFVSKEMIQTHCPA----PASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 201 ~~~~s~~~~~~~~~~g~~~~~~l~~~~~~----~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
.+++++++.. .|.+.. .+.+..+. ...+..+|+|||+ +|++++++.|.+
T Consensus 171 ~~~~s~~~~~----~~~v~~-~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 171 DLAFSRDQAQ----KRYVQD-RLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred EEEEccCCCC----CcchHH-HHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHH
Confidence 8888865321 344432 22221110 0135789999999 999999988854
No 60
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.97 E-value=6e-30 Score=214.59 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=151.4
Q ss_pred EEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---c---------------------eEeeeeee-cCCCCcEEE
Q 024591 48 LVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---E---------------------IVKMIFVG-SHSDGIFFN 102 (265)
Q Consensus 48 v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~---------------------~~r~ysis-~~~~~~~~~ 102 (265)
|++++++++++.+++|+.+.......+.||||+.|.+ . ..|+||++ .+++.++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 5789999999999999988753236789999999997 2 35999955 455788999
Q ss_pred EEEeccCC---CCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeC
Q 024591 103 ILYHATCL---LSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANV 176 (265)
Q Consensus 103 ~~ik~~~~---~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r 176 (265)
|.|+.+++ +|+| +++||+|.+.||+|.|.+.. ..++++||||||||+|++++++++... .+++++|++|
T Consensus 81 ~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~~ 155 (235)
T cd06193 81 IDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEVP 155 (235)
T ss_pred EEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEEC
Confidence 99987743 7888 99999999999999987654 457899999999999999999987643 6899999999
Q ss_pred CCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHH-C
Q 024591 177 TYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEA-L 255 (265)
Q Consensus 177 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~-~ 255 (265)
+.+|++..+++ ++ +++.++.+++... +......+. .......+..+|+|||+.|++.++..|++ .
T Consensus 156 ~~~d~~~l~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~vyicGp~~mv~~v~~~l~~~~ 221 (235)
T cd06193 156 DAADEQPLPAP-------AG-VEVTWLHRGGAEA-----GELALLAVR-ALAPPAGDGYVWIAGEAGAVRALRRHLREER 221 (235)
T ss_pred CHHHccccCCC-------CC-cEEEEEeCCCCCc-----chhHHHHHh-cccCCCCCeEEEEEccHHHHHHHHHHHHHcc
Confidence 98766433322 23 6777666543221 111111122 22222346789999999999999999976 6
Q ss_pred CCCCCCEEe
Q 024591 256 GYTSEMLFQ 264 (265)
Q Consensus 256 gv~~~~I~~ 264 (265)
|++++|||.
T Consensus 222 g~~~~~i~~ 230 (235)
T cd06193 222 GVPRAQVYA 230 (235)
T ss_pred CCCHHHEEE
Confidence 999999985
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=7.7e-29 Score=238.96 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=163.1
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeee-cCCCCcEEEEEEeccCCCCcc---cCCC
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVG-SHSDGIFFNILYHATCLLSLL---ISVN 118 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis-~~~~~~~~~~~ik~~~~~S~~---~~~G 118 (265)
++|++++++++++..++|+.|.. ...++||||++|++ ...||||++ .+++.+.++|+|+..|.+|.+ +++|
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~--~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~G 79 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLI--AKSRKPGQFVIVRVGEKGERIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEG 79 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCch--hccCCCCeeEEEEeCCCCCeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCC
Confidence 57999999999999999987753 35799999999998 457899965 455778999999999889888 8999
Q ss_pred CEE-EEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCC
Q 024591 119 SMQ-SVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQ 197 (265)
Q Consensus 119 ~~v-~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~ 197 (265)
|.+ .|.||+|++.... ..+++++||||+||||++++++++.+++ .+++++|++|+.+++++.++|+++.++
T Consensus 80 d~v~~v~GP~G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r~~~~l~~~~el~~~~~~---- 151 (752)
T PRK12778 80 DYITDVVGPLGNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGRSKELIILEDEMRESSDE---- 151 (752)
T ss_pred CEeCeEeCCCCCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccCCHHHhhhHHHHHhhcCe----
Confidence 999 7999999976543 3479999999999999999999998764 589999999999999999999988643
Q ss_pred eEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 198 FTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 198 ~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
+. .. + ++.|.+..|++++ .+++.++.......+|+|||+.|++.+.+.+++.|++
T Consensus 152 ~~--~~-t--~dg~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~ 206 (752)
T PRK12778 152 VI--IM-T--DDGSYGRKGLVTD-GLEEVIKRETKVDKVFAIGPAIMMKFVCLLTKKYGIP 206 (752)
T ss_pred EE--EE-E--CCCCCCCcccHHH-HHHHHhhcCCCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 22 22 2 3456777888885 5666654322345799999999999999999999987
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=3.5e-28 Score=236.97 Aligned_cols=209 Identities=20% Similarity=0.293 Sum_probs=166.6
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeec-CCCCcEEEEEEeccCCCCcc---
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGS-HSDGIFFNILYHATCLLSLL--- 114 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~-~~~~~~~~~~ik~~~~~S~~--- 114 (265)
.+..++|++++.+++++..++|+.|.. ...++||||++|+. ...||||+++ +++.+.++|+|+..|..|..
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~--~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~ 724 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMV--ARSAQAGQFVRVLPWEKGELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR 724 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCc--cccCCCCceEEEEeCCCCCEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc
Confidence 477899999999999999999988764 35799999999997 5679999665 45678899999998776655
Q ss_pred cCCCCEE-EEeeeeeeeE-ecC-CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHH---HH
Q 024591 115 ISVNSMQ-SVANIIGRFR-YQP-GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEE---LD 188 (265)
Q Consensus 115 ~~~G~~v-~i~gp~G~~~-~~~-~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~---l~ 188 (265)
+++||.+ .|.||+|++. ++. ...++++|||||+||||++++++++++.+ .+++++|++|+.+++++.++ ++
T Consensus 725 lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~Rs~edl~~~del~~L~ 801 (944)
T PRK12779 725 MAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFRAKEFLFWTGDDERVG 801 (944)
T ss_pred CCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeCCHHHhhhHHHHHHHH
Confidence 8999999 4999999964 332 12368999999999999999999988764 58999999999999988766 45
Q ss_pred HHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCC---C--CCcEEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 189 GFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP---A--SDIQVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 189 ~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~---~--~~~~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
+|.+.+++.+++++.. ++.|.+..|+++. .+.+.+... . ....||+|||+.||+.+...|+++|++.
T Consensus 802 ~la~~~~~~~~v~~tt---ddgs~G~~G~Vt~-~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~Gv~~ 873 (944)
T PRK12779 802 KLKAEFGDQLDVIYTT---NDGSFGVKGFVTG-PLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYGVKT 873 (944)
T ss_pred HHHHHcCCCeEEEEEe---cCCCCCCccccCh-HHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcCCCe
Confidence 6777777646665442 2356677888885 344443221 1 1357999999999999999999999986
No 63
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.96 E-value=8.2e-29 Score=203.44 Aligned_cols=220 Identities=18% Similarity=0.358 Sum_probs=187.2
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----------------------------------c
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----------------------------------E 85 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----------------------------------~ 85 (265)
...| .++|++......-+..+.+..|+.. ..+|+||-|+++.. .
T Consensus 132 vkkW-ectViSNdN~ATFIKEL~laip~g~-~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~ 209 (410)
T COG2871 132 VKKW-ECTVISNDNKATFIKELKLAIPEGE-EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEP 209 (410)
T ss_pred ccce-eEEEEeCCchhhhhhhheeeCCCCC-ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHH
Confidence 3445 6899999988888999999998874 58899999999987 3
Q ss_pred eEeeee-eecCCCCcEEEEEEeccCC-----------CCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChH
Q 024591 86 IVKMIF-VGSHSDGIFFNILYHATCL-----------LSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGIT 150 (265)
Q Consensus 86 ~~r~ys-is~~~~~~~~~~~ik~~~~-----------~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIa 150 (265)
..|.|| .+-+.+.+.+.+-||.... +|+| +++||+|.|+||+|.|.-. +....+|||+||.|.+
T Consensus 210 ~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaK-dtdaemvFigGGAGma 288 (410)
T COG2871 210 IIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAK-DTDAEMVFIGGGAGMA 288 (410)
T ss_pred HHHHhhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhc-cCCCceEEEecCcCcC
Confidence 457888 5667788899999987632 6777 9999999999999997644 4558999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCC--CCCCCCcccCCCHHHHhhhCC
Q 024591 151 PMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP--PESWNGGVGFVSKEMIQTHCP 228 (265)
Q Consensus 151 p~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~--~~~~~~~~g~~~~~~l~~~~~ 228 (265)
|++|-+-..+.+-+..+++++.|++|+..+.+|.+++++|++++|| |+++.++|++ .++|++..|.+.....+..+.
T Consensus 289 pmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pN-F~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk 367 (410)
T COG2871 289 PMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPN-FHWHLALSDPLPEDNWDGYTGFIHNVLYENYLK 367 (410)
T ss_pred chHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCC-cEEEEEecCCCCcCCcccchhHHHHHHHhhhhh
Confidence 9999887777665678999999999999999999999999999999 9999999986 478999888777655555554
Q ss_pred C--CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 229 A--PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 229 ~--~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
+ ..++..+|+||||-|..++.+.|..+|+..+||.
T Consensus 368 ~h~aPEDceyYmCGPp~mNasvikmL~dlGVE~enIl 404 (410)
T COG2871 368 DHEAPEDCEYYMCGPPLMNASVIKMLKDLGVERENIL 404 (410)
T ss_pred cCCCchheeEEeeCcchhhHHHHHHHHhcCcccccee
Confidence 3 2568899999999999999999999999999985
No 64
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.95 E-value=3.9e-27 Score=194.20 Aligned_cols=181 Identities=20% Similarity=0.231 Sum_probs=139.2
Q ss_pred EEEEec-CCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeecCCC--CcEEEEEEeccCCCCcc----cC
Q 024591 50 KRLQLS-HNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGSHSD--GIFFNILYHATCLLSLL----IS 116 (265)
Q Consensus 50 ~~~~~~-~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~~~~--~~~~~~~ik~~~~~S~~----~~ 116 (265)
.++.++ +++..++|+.+.. ..++||||+.|++ ..+||||+++.++ .+.++|+||..++.+++ ++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~---~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~ 79 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPKP---FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKAL 79 (210)
T ss_pred EEEEecCCCEEEEEEecCCC---CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHH
Confidence 445556 9999999987753 7899999999998 2689999766665 48999999999654443 44
Q ss_pred ------CCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCC---CCcEEEEEEeeCCCccc-ccHHH
Q 024591 117 ------VNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPN---DKTKVHLIYANVTYEDI-LLKEE 186 (265)
Q Consensus 117 ------~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~---~~~~i~L~~~~r~~~~~-~~~~~ 186 (265)
.|+.+.+.||||.+..+...+++++|||||+||||+++++++++.... ...+++|+|++|+.+++ .+.++
T Consensus 80 ~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~ 159 (210)
T cd06186 80 KSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDE 159 (210)
T ss_pred hCcCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHH
Confidence 889999999999976344456899999999999999999999987632 35799999999999984 78888
Q ss_pred HHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 187 LDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 187 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
|.+..+-... .++..++++ +++|||++|++.++..+.+.+.....+|
T Consensus 160 l~~~~~~~~~-~~~~i~~T~-----------------------------v~~CGp~~~~~~~~~~~~~~~~~~~~~~ 206 (210)
T cd06186 160 LRAAQELEVD-GEIEIYVTR-----------------------------VVVCGPPGLVDDVRNAVAKKGGTGVEFH 206 (210)
T ss_pred HHhhhhccCC-ceEEEEEee-----------------------------EEEECchhhccHHHHHHhhcCCCceEEE
Confidence 8751111001 123333332 9999999999999999988666655554
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=9.4e-27 Score=228.71 Aligned_cols=195 Identities=15% Similarity=0.232 Sum_probs=160.2
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeec-CCCCcEEEEEEeccCCCCcc----cCC
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGS-HSDGIFFNILYHATCLLSLL----ISV 117 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~-~~~~~~~~~~ik~~~~~S~~----~~~ 117 (265)
++|+++++++++++.++|+.|... ..++||||+.|++ ...||||+++ +++.+.++|.|+..|.+|++ +++
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a--~~~~PGQFV~l~~~~~~errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~lk~ 79 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVA--ASAEPGHFVMLRLYEGAERIPLTVADFDRKKGTITMVVQALGKTTREMMTKFKA 79 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcc--cCCCCCeeEEEEeCCCCeeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcCCC
Confidence 479999999999999999988753 6799999999998 4679999654 55778999999999888887 799
Q ss_pred CCEE-EEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCC
Q 024591 118 NSMQ-SVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPD 196 (265)
Q Consensus 118 G~~v-~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~ 196 (265)
||.+ .+.||+|.+... ...+++++||||+||||++++++.+.+.+ .+++++|++|+.+++++.++|+++..+
T Consensus 80 Gd~l~~v~GPlG~~~~~-~~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R~~~~l~~~del~~~~~~--- 152 (1006)
T PRK12775 80 GDTFEDFVGPLGLPQHI-DKAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFRNKDLVFWEDKFGKYCDD--- 152 (1006)
T ss_pred CCEEeeeecCCCCCCCC-CCCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCCChHHcccHHHHHhhcCc---
Confidence 9999 799999996432 23478999999999999999999988764 579999999999999999999876532
Q ss_pred CeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 197 QFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 197 ~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
+.+ . + ++.|.+..|++.. .+.+.+.. .....+|+|||+.||+.+...+++.|+
T Consensus 153 -~~v--~-t--ddgs~G~~G~vt~-~l~~~l~~-~~~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 153 -LIV--C-T--DDGSYGKPGFVTA-ALKEVCEK-DKPDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred -EEE--E-E--CCCCCCCCCChHH-HHHHHhcc-CCCCEEEEECCHHHHHHHHHHHHHCCC
Confidence 322 2 2 2446677888884 56666543 224579999999999999999999998
No 66
>PLN02292 ferric-chelate reductase
Probab=99.94 E-value=2.4e-25 Score=208.90 Aligned_cols=194 Identities=19% Similarity=0.179 Sum_probs=150.9
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCC--CCcEEEEEEeccCCCCcc--
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHS--DGIFFNILYHATCLLSLL-- 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~--~~~~~~~~ik~~~~~S~~-- 114 (265)
..+++++++.+++++.+++++.+.. ..++||||+.+++ .++||||+++.+ +++.++++||..|++|++
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~---~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~ 401 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPM---LMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLY 401 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHH
Confidence 4688999999999999999987653 6899999999988 578999966543 567899999999998877
Q ss_pred --cCCCC-----EEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCC----CcEEEEEEeeCCCccccc
Q 024591 115 --ISVNS-----MQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPND----KTKVHLIYANVTYEDILL 183 (265)
Q Consensus 115 --~~~G~-----~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~----~~~i~L~~~~r~~~~~~~ 183 (265)
+++|| ++.++||||.+..+....+++++||||+||||++++++++.+++.+ .++++|+|++|+.+|+.+
T Consensus 402 ~~l~~gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ 481 (702)
T PLN02292 402 HMLSSSDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSM 481 (702)
T ss_pred HhCCCCCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhH
Confidence 67787 4679999998654444558999999999999999999999875321 268999999999999998
Q ss_pred HHHHHH-------HHHhCCCCeEEEEEecCCCCCC-CCcccCCCHHHHhhhCCCCC--CCcEEEEeCCHHH
Q 024591 184 KEELDG-------FAAKYPDQFTIYYVLNQPPESW-NGGVGFVSKEMIQTHCPAPA--SDIQVLRCGPPPM 244 (265)
Q Consensus 184 ~~~l~~-------l~~~~~~~~~~~~~~s~~~~~~-~~~~g~~~~~~l~~~~~~~~--~~~~v~vCGp~~~ 244 (265)
.+++.. +.++. + +++..+++++++.. .+..| +++.+++..+.+. +...+.+|||++.
T Consensus 482 ld~l~~e~~~~~~l~~~~-~-~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~ 548 (702)
T PLN02292 482 LDLILPTSGLETELSSFI-D-IQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSW 548 (702)
T ss_pred HHHHHHhhhhHHHHhhcC-C-ceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCch
Confidence 876543 22333 3 67777777765332 22333 6677877766444 7889999999974
No 67
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.93 E-value=5.9e-26 Score=201.33 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=136.4
Q ss_pred cCCCCCeEEEEee-ceEeeeeeecCCC--CcEEEEEEecc----------CCCCcc----cCCCCEEEEeeeee-eeEec
Q 024591 72 LGLPIGQHISCRK-EIVKMIFVGSHSD--GIFFNILYHAT----------CLLSLL----ISVNSMQSVANIIG-RFRYQ 133 (265)
Q Consensus 72 ~~~~pGq~v~l~~-~~~r~ysis~~~~--~~~~~~~ik~~----------~~~S~~----~~~G~~v~i~gp~G-~~~~~ 133 (265)
..+.+||++.+.. ...|+|||++.+. ++.++++|+.. |.+|.| +++|+.|.+.+|.| .|.++
T Consensus 130 ~~~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~~F~lp 209 (360)
T cd06199 130 ARLTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPHFRLP 209 (360)
T ss_pred CCCCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCCCcCCC
Confidence 5688999999876 6789999777663 47899998854 338888 46899999997555 68887
Q ss_pred CCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCC
Q 024591 134 PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWN 212 (265)
Q Consensus 134 ~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~ 212 (265)
.+...++||||+||||||+++++++.... ....+++|+|++|+. .|++|.+||+++.++..+ +++..++|++.....
T Consensus 210 ~~~~~piImIa~GtGIAP~~s~l~~~~~~-~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~-~~~~~a~Sr~~~~~~ 287 (360)
T cd06199 210 EDPDAPIIMVGPGTGIAPFRAFLQEREAT-GAKGKNWLFFGERHFATDFLYQDELQQWLKDGVL-TRLDTAFSRDQAEKV 287 (360)
T ss_pred CCCCCCEEEEecCcChHHHHHHHHHHHhc-cCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCC-eEEEEEEccCCCCCc
Confidence 65567999999999999999999988765 234789999999997 799999999999988766 889999998654322
Q ss_pred CcccCCCH--HHHhhhCCCCCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 213 GGVGFVSK--EMIQTHCPAPASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 213 ~~~g~~~~--~~l~~~~~~~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
..++++.+ +.+...+ ..+..+|+|||+ .|++++++.|.+
T Consensus 288 yVq~~l~~~~~~~~~~~---~~~~~vYvCG~~~~M~~~V~~~L~~ 329 (360)
T cd06199 288 YVQDRMREQGAELWAWL---EEGAHFYVCGDAKRMAKDVDAALLD 329 (360)
T ss_pred cHHHHHHHhHHHHHHHH---hCCCEEEEECCCccccHHHHHHHHH
Confidence 22222221 1111122 246789999999 899999888754
No 68
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.92 E-value=3.7e-25 Score=197.85 Aligned_cols=171 Identities=14% Similarity=0.097 Sum_probs=132.1
Q ss_pred ceEeeeeeecCCC--CcEEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCC
Q 024591 85 EIVKMIFVGSHSD--GIFFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSG 148 (265)
Q Consensus 85 ~~~r~ysis~~~~--~~~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtG 148 (265)
...|+|||++.+. .+.++|+|+.. |-+|+| +++|++|.+.+|.|.|.++.+...++||||+|||
T Consensus 162 l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~~~~~plImIa~GtG 241 (382)
T cd06207 162 IKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPKDPKKPIIMVGPGTG 241 (382)
T ss_pred CCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCCCCCCCEEEEcCCcc
Confidence 6889999776653 58899999865 337777 8999999999999999887655679999999999
Q ss_pred hHHHHHHHHHHHhC---CCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCH--HH
Q 024591 149 ITPMFQVTRAILEN---PNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSK--EM 222 (265)
Q Consensus 149 Iap~~~~l~~l~~~---~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~--~~ 222 (265)
|||++++++++... +....+++|+|++|+. .|++|.+|++++.+..+. +++..++|++.......++++.+ +.
T Consensus 242 IAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~-~~~~~a~Srd~~~~~yVq~~l~~~~~~ 320 (382)
T cd06207 242 LAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVL-TTLGTAFSRDQPKKVYVQDLIRENSDL 320 (382)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCC-ceEEEEecCCCCCceEhHHHHHHCHHH
Confidence 99999999987532 2345789999999998 899999999999988766 88989998765422222222221 22
Q ss_pred HhhhCCCCCCCcEEEEeCCHH-HHHHHHHHHHHCCCC
Q 024591 223 IQTHCPAPASDIQVLRCGPPP-MNKAMAAHLEALGYT 258 (265)
Q Consensus 223 l~~~~~~~~~~~~v~vCGp~~-~~~~~~~~l~~~gv~ 258 (265)
+.+.+. .++..||+|||+. |++++++.|.+.+..
T Consensus 321 ~~~~l~--~~~~~vYvCG~~~~M~~~V~~~L~~~~~~ 355 (382)
T cd06207 321 VYQLLE--EGAGVIYVCGSTWKMPPDVQEAFEEILKK 355 (382)
T ss_pred HHHHHh--cCCCEEEEECCcccccHHHHHHHHHHHHH
Confidence 333332 2345899999998 999999999776543
No 69
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.92 E-value=3.9e-25 Score=197.88 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=134.4
Q ss_pred CCCCCeEEEEee-ceEeeeeeecCCC--CcEEEEEEecc------------CCCCcc---cCCCCEEEE--eeeeeeeEe
Q 024591 73 GLPIGQHISCRK-EIVKMIFVGSHSD--GIFFNILYHAT------------CLLSLL---ISVNSMQSV--ANIIGRFRY 132 (265)
Q Consensus 73 ~~~pGq~v~l~~-~~~r~ysis~~~~--~~~~~~~ik~~------------~~~S~~---~~~G~~v~i--~gp~G~~~~ 132 (265)
....||++.+.- ...|+|||++.+. .+.++++|+.. |.+|.| +++|++|.+ .+|.|.|.+
T Consensus 146 ~~~~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l 225 (384)
T cd06206 146 ALPLATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHSAFRP 225 (384)
T ss_pred CCCHHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCCccCC
Confidence 356788888765 6789999777653 46666666542 337777 899999985 588999988
Q ss_pred cCCCCceEEEEEeCCChHHHHHHHHHHHhC---CCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCC
Q 024591 133 QPGQVRAFGMTAGGSGITPMFQVTRAILEN---PNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPP 208 (265)
Q Consensus 133 ~~~~~~~~vlia~GtGIap~~~~l~~l~~~---~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~ 208 (265)
+.+..+++||||+||||||++++++++... +....+++|+|++|+. .|++|.+||+++.+. ++ +++..++|+++
T Consensus 226 ~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~-~~l~~a~Sr~~ 303 (384)
T cd06206 226 PSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GV-VSVRRAYSRPP 303 (384)
T ss_pred CCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CC-eEEEEEecccC
Confidence 765567999999999999999999987642 2234689999999999 799999999999874 45 89999998764
Q ss_pred CCCCCcccCCCHHH------HhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 209 ESWNGGVGFVSKEM------IQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 209 ~~~~~~~g~~~~~~------l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
.. ..++++..+ +...+ .++..+|+|||+.|++++++.|.+.+...
T Consensus 304 ~~---~~~yVq~~i~~~~~~~~~~~---~~~~~vyiCGp~~M~~~v~~~L~~i~~~~ 354 (384)
T cd06206 304 GG---GCRYVQDRLWAEREEVWELW---EQGARVYVCGDGRMAPGVREVLKRIYAEK 354 (384)
T ss_pred CC---CCEechhhHHhhHHHHHHHH---HCCcEEEEECCCchHHHHHHHHHHHHHHh
Confidence 32 123444211 11222 24688999999999999999998765543
No 70
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.92 E-value=6.1e-25 Score=205.85 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=136.0
Q ss_pred cCCCCCeEEEEee-ceEeeeeeecCC--CCcEEEEEEecc----------CCCCcc----cCCCCEEEEeeeee-eeEec
Q 024591 72 LGLPIGQHISCRK-EIVKMIFVGSHS--DGIFFNILYHAT----------CLLSLL----ISVNSMQSVANIIG-RFRYQ 133 (265)
Q Consensus 72 ~~~~pGq~v~l~~-~~~r~ysis~~~--~~~~~~~~ik~~----------~~~S~~----~~~G~~v~i~gp~G-~~~~~ 133 (265)
..+.||||+.+.. ...|+|||++.+ .+++++|+|+.. |.+|.| +++|++|.+.+|.| .|.++
T Consensus 367 ~~~~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp 446 (597)
T TIGR01931 367 ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDNFRLP 446 (597)
T ss_pred CCCCHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCcccCC
Confidence 5789999999886 678999977765 367899998854 448887 78999999998655 69887
Q ss_pred CCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCC-CcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCC
Q 024591 134 PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVT-YEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWN 212 (265)
Q Consensus 134 ~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~-~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~ 212 (265)
.+...++||||+||||||++++++++...+ ...+++|+|++|+ .+|++|.+||+++.++... .++...+|++..
T Consensus 447 ~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l-~~l~~afSRd~~--- 521 (597)
T TIGR01931 447 EDPDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVL-TKMDLAFSRDQA--- 521 (597)
T ss_pred CCCCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCC-ceeEEEEecCCC---
Confidence 665679999999999999999999987663 4578999999999 7799999999999988665 667788887432
Q ss_pred CcccCCCHHHHhhhCCC----CCCCcEEEEeC-CHHHHHHHHHHHHH
Q 024591 213 GGVGFVSKEMIQTHCPA----PASDIQVLRCG-PPPMNKAMAAHLEA 254 (265)
Q Consensus 213 ~~~g~~~~~~l~~~~~~----~~~~~~v~vCG-p~~~~~~~~~~l~~ 254 (265)
..++++.. +.+.... ..++..||+|| |+.|++++.+.|.+
T Consensus 522 -~k~yVqd~-l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~ 566 (597)
T TIGR01931 522 -EKIYVQHR-IREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLD 566 (597)
T ss_pred -CCccHHHH-HHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHH
Confidence 23444422 2211100 02468899999 88999999888864
No 71
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.90 E-value=9.6e-24 Score=189.47 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=128.3
Q ss_pred ceEeeeeeecCCC--CcEEEEEEeccC-----CCCcc---cC-----CCCEEEEee-eeeeeEecCC-CCceEEEEEeCC
Q 024591 85 EIVKMIFVGSHSD--GIFFNILYHATC-----LLSLL---IS-----VNSMQSVAN-IIGRFRYQPG-QVRAFGMTAGGS 147 (265)
Q Consensus 85 ~~~r~ysis~~~~--~~~~~~~ik~~~-----~~S~~---~~-----~G~~v~i~g-p~G~~~~~~~-~~~~~vlia~Gt 147 (265)
...|+|||++.+. .+.++|+|+..+ -+|.| +. +|++|.+.+ |.|.|.++.+ ...++||||+||
T Consensus 172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~Gt 251 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGT 251 (398)
T ss_pred CCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCCc
Confidence 5789999777663 478999988753 37888 55 999999998 5677887655 457999999999
Q ss_pred ChHHHHHHHHHHHhC-----CCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHH
Q 024591 148 GITPMFQVTRAILEN-----PNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKE 221 (265)
Q Consensus 148 GIap~~~~l~~l~~~-----~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~ 221 (265)
||||++++++++... ++...+++|+|++|+. .|++|.+||+++.++.+. +++..++|++.+.+ +..++++.
T Consensus 252 GIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~-~~~~~a~SRd~~~~-g~k~yVqd- 328 (398)
T cd06203 252 GVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL-TRLIVAFSRDENDG-STPKYVQD- 328 (398)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC-ceEEEEECCCCCCC-CCceecch-
Confidence 999999999987652 2345789999999999 799999999999988766 77888999875543 45667764
Q ss_pred HHhhhCCC-----CCCCcEEEEeCC-HHHHHHHHHHHH
Q 024591 222 MIQTHCPA-----PASDIQVLRCGP-PPMNKAMAAHLE 253 (265)
Q Consensus 222 ~l~~~~~~-----~~~~~~v~vCGp-~~~~~~~~~~l~ 253 (265)
.+.+.... ...+..+|+||| +.|.+++++.|.
T Consensus 329 ~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~ 366 (398)
T cd06203 329 KLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFV 366 (398)
T ss_pred HHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHH
Confidence 33222110 124688999999 579899988886
No 72
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.90 E-value=3.8e-22 Score=187.97 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=138.6
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCC--CCcEEEEEEeccCCCCcc----
Q 024591 46 FKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHS--DGIFFNILYHATCLLSLL---- 114 (265)
Q Consensus 46 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~--~~~~~~~~ik~~~~~S~~---- 114 (265)
..+++++..++++.++++..+.. +.++||||+.+.+ .++||||+++.+ +++.+++.||..++.|+.
T Consensus 314 ~~vvs~~~~~~~~v~l~i~r~~~---~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~ 390 (722)
T PLN02844 314 TCILSARLFPCKAIELVLPKDPG---LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNK 390 (722)
T ss_pred EEEEEEEEecCCEEEEEEECCCC---CCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHH
Confidence 34567777888998888866543 7899999999998 578999976643 577899999999887765
Q ss_pred ----cCCC------CEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCC----CCcEEEEEEeeCCCcc
Q 024591 115 ----ISVN------SMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPN----DKTKVHLIYANVTYED 180 (265)
Q Consensus 115 ----~~~G------~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~----~~~~i~L~~~~r~~~~ 180 (265)
+++| .++.++||||.+..+....+++++||||+||||++++++++.+.++ ...+++|+|++|+.+|
T Consensus 391 i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~d 470 (722)
T PLN02844 391 IQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQD 470 (722)
T ss_pred HHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHH
Confidence 2234 3899999999976554456899999999999999999999986432 1358999999999999
Q ss_pred cccHHHHHH-----HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHH----HhhhCCCCCCCcEEEEeCCHHH
Q 024591 181 ILLKEELDG-----FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEM----IQTHCPAPASDIQVLRCGPPPM 244 (265)
Q Consensus 181 ~~~~~~l~~-----l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~----l~~~~~~~~~~~~v~vCGp~~~ 244 (265)
+.+.+++.. +.+.. + +++.+++++++.... ++++-. +.+.+.-..+...+.+|||.+.
T Consensus 471 L~~~del~~~l~~~~~~~~-~-lkl~iyVTRE~~~~~----rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 471 ICLLNPISSLLLNQSSNQL-N-LKLKVFVTQEEKPNA----TLRELLNQFSQVQTVNFSTKCSRYAIHGLESF 537 (722)
T ss_pred hhhHHHHHHHhHHhHHHhc-C-ceEEEEECCCCCCCC----chhhHhhccchhhhcCCCCCCCceEEeCCCch
Confidence 999998852 22222 3 777778888654321 333211 1111222345667999999864
No 73
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.89 E-value=2e-23 Score=194.99 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=135.4
Q ss_pred cCCCCCeEEEEee-ceEeeeeeecCC--CCcEEEEEEecc----------CCCCcc----cCCCCEEEEeeeee-eeEec
Q 024591 72 LGLPIGQHISCRK-EIVKMIFVGSHS--DGIFFNILYHAT----------CLLSLL----ISVNSMQSVANIIG-RFRYQ 133 (265)
Q Consensus 72 ~~~~pGq~v~l~~-~~~r~ysis~~~--~~~~~~~~ik~~----------~~~S~~----~~~G~~v~i~gp~G-~~~~~ 133 (265)
..+.+||++.+.. ..+|+|||++.+ ..++++++|+.. |.+|.| +++|++|.|.+|.| .|.++
T Consensus 370 ~~~~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp 449 (600)
T PRK10953 370 AQLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHNDNFRLP 449 (600)
T ss_pred CCCCHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCCcccCC
Confidence 4688999998876 678999987765 456788886432 226776 78999999999876 58887
Q ss_pred CCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCC-CcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCC
Q 024591 134 PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVT-YEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWN 212 (265)
Q Consensus 134 ~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~-~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~ 212 (265)
.+...++||||+||||||++++++++... ....+++|+|++|+ ..|++|++||+++.+.... .++...+||......
T Consensus 450 ~~~~~piImIg~GTGIAPfrsflq~r~~~-~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l-~~l~~afSRd~~~k~ 527 (600)
T PRK10953 450 ANPETPVIMIGPGTGIAPFRAFMQQRAAD-GAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLL-TRIDLAWSRDQKEKI 527 (600)
T ss_pred CCCCCCEEEEecCcCcHHHHHHHHHHHHc-CCCCCeEEEeeccCCccchhHHHHHHHHHHcCCc-ceEEEEECCCCCCCC
Confidence 66668999999999999999999998765 34578999999999 7799999999999988654 567788888654333
Q ss_pred CcccCCCHH--HHhhhCCCCCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 213 GGVGFVSKE--MIQTHCPAPASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 213 ~~~g~~~~~--~l~~~~~~~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
..+.++.+. .+-+++ .++..|||||+. .|.++|.+.|.+
T Consensus 528 YVQ~~l~e~~~~l~~~l---~~ga~~YVCG~~~~M~~~V~~~L~~ 569 (600)
T PRK10953 528 YVQDKLREQGAELWRWI---NDGAHIYVCGDANRMAKDVEQALLE 569 (600)
T ss_pred cHHHHHHHHHHHHHHHH---HCCcEEEEECCCccchHHHHHHHHH
Confidence 334444321 222333 357899999997 588888887743
No 74
>PLN02631 ferric-chelate reductase
Probab=99.89 E-value=3.2e-22 Score=187.63 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=128.5
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCC--CCcEEEEEEeccCCCCcc---
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHS--DGIFFNILYHATCLLSLL--- 114 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~--~~~~~~~~ik~~~~~S~~--- 114 (265)
..++++.+.+++++.++++..+.. ..++||||+.+++ .++||||+++.+ +++.+++.||..|++|++
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~~~---~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~ 385 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKTPG---LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYT 385 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcCCC---CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHH
Confidence 467888888999999999975543 6799999999998 578999966544 467899999999888877
Q ss_pred -cC-CCC--EEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCC----CCcEEEEEEeeCCCcccccHHH
Q 024591 115 -IS-VNS--MQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPN----DKTKVHLIYANVTYEDILLKEE 186 (265)
Q Consensus 115 -~~-~G~--~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~----~~~~i~L~~~~r~~~~~~~~~~ 186 (265)
++ .|+ ++.++||||.+..+....+++|+||||+||||+++++++++.+.. ..++++|+|++|+.+|+.+.||
T Consensus 386 ~l~~~g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~de 465 (699)
T PLN02631 386 HLSSSIDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDL 465 (699)
T ss_pred hhhcCCCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHH
Confidence 43 344 788899999865554556899999999999999999999986522 1347999999999999999999
Q ss_pred HHHH------HHhCCCCeEEEEEecCCC
Q 024591 187 LDGF------AAKYPDQFTIYYVLNQPP 208 (265)
Q Consensus 187 l~~l------~~~~~~~~~~~~~~s~~~ 208 (265)
+..+ .++ .+ +++..+++|++
T Consensus 466 L~~l~~~~~~l~~-~n-i~i~iyVTR~~ 491 (699)
T PLN02631 466 IFPLDISVSDISR-LN-LRIEAYITRED 491 (699)
T ss_pred Hhhhccchhhhhc-Cc-eEEEEEEcCCC
Confidence 9863 223 35 99999999853
No 75
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.89 E-value=5.5e-23 Score=185.47 Aligned_cols=166 Identities=14% Similarity=0.093 Sum_probs=125.7
Q ss_pred ceEeeeeeecCC--CCcEEEEEEecc-----------CCCCcc---cC---------------------CCCEEEEeeee
Q 024591 85 EIVKMIFVGSHS--DGIFFNILYHAT-----------CLLSLL---IS---------------------VNSMQSVANII 127 (265)
Q Consensus 85 ~~~r~ysis~~~--~~~~~~~~ik~~-----------~~~S~~---~~---------------------~G~~v~i~gp~ 127 (265)
...|.|||++.+ +.+.++++|+.. |-+|.| +. +|+.|.+..|.
T Consensus 176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~ 255 (416)
T cd06204 176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR 255 (416)
T ss_pred CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence 688999977766 457788888743 237777 33 89999999999
Q ss_pred eeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhC---CCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEE
Q 024591 128 GRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILEN---PNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYV 203 (265)
Q Consensus 128 G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~---~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~ 203 (265)
|.|.++.+...++||||+||||||+++++++.... +....+++|+|++|+. +|++|.+++++|.+.+++ +++..+
T Consensus 256 g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~~l~~a 334 (416)
T cd06204 256 SNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGL-LELVTA 334 (416)
T ss_pred CCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCc-eEEEEE
Confidence 99988765568999999999999999999986532 2234689999999998 799999999999987766 899999
Q ss_pred ecCCCCCCCCcccCCCH--HHHhhhCCCCCCCcEEEEeCCHH-HHHHHHHHHHH
Q 024591 204 LNQPPESWNGGVGFVSK--EMIQTHCPAPASDIQVLRCGPPP-MNKAMAAHLEA 254 (265)
Q Consensus 204 ~s~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~v~vCGp~~-~~~~~~~~l~~ 254 (265)
+|++.+.....++++.+ +.+...+ .++..||+|||+. |++++++.|.+
T Consensus 335 ~Sr~~~~k~yVq~~i~~~~~~~~~~l---~~~~~vYvCGp~~~M~~~V~~~L~~ 385 (416)
T cd06204 335 FSREQPKKVYVQHRLAEHAEQVWELI---NEGAYIYVCGDAKNMARDVEKTLLE 385 (416)
T ss_pred ECcCCCCCcchHHHHHHhHHHHHHHH---HcCCEEEEECCcccchHHHHHHHHH
Confidence 98764422233444432 1122222 2358899999998 99999888854
No 76
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.89 E-value=1.4e-22 Score=182.39 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=123.5
Q ss_pred ceEeeeeeecCCC--CcEEEEEEecc-------------CCCCcc---cCCCCEEEEeeeee-eeEecCCCCceEEEEEe
Q 024591 85 EIVKMIFVGSHSD--GIFFNILYHAT-------------CLLSLL---ISVNSMQSVANIIG-RFRYQPGQVRAFGMTAG 145 (265)
Q Consensus 85 ~~~r~ysis~~~~--~~~~~~~ik~~-------------~~~S~~---~~~G~~v~i~gp~G-~~~~~~~~~~~~vlia~ 145 (265)
...|+|||++.+. ++.++++|+.. |-+|+| +++||.|.+.++.+ .|.++.+...++||||+
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~ 254 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGP 254 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcC
Confidence 6789999777653 56677776543 337777 89999999987654 68887655679999999
Q ss_pred CCChHHHHHHHHHHHh-------CCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccC
Q 024591 146 GSGITPMFQVTRAILE-------NPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGF 217 (265)
Q Consensus 146 GtGIap~~~~l~~l~~-------~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~ 217 (265)
||||||+++++++... .+....+++|+|++|+. +|.+|.+||+++.+.... ++++.++|+++.. ..++
T Consensus 255 GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~~~~a~SR~~~~---~k~y 330 (406)
T cd06202 255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVL-TEVYTALSREPGK---PKTY 330 (406)
T ss_pred CcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCC-ceEEEEEcCCCCC---CCee
Confidence 9999999999998642 11235789999999999 799999999999988766 7888899986432 2345
Q ss_pred CCHHHHhhhCCC-----CCCCcEEEEeCCHHHHHHHHHHHHH
Q 024591 218 VSKEMIQTHCPA-----PASDIQVLRCGPPPMNKAMAAHLEA 254 (265)
Q Consensus 218 ~~~~~l~~~~~~-----~~~~~~v~vCGp~~~~~~~~~~l~~ 254 (265)
++. .+.+.... ...+..+|+|||+.|++++++.|.+
T Consensus 331 Vq~-~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~ 371 (406)
T cd06202 331 VQD-LLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQR 371 (406)
T ss_pred hhh-HHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHH
Confidence 553 22211110 0357889999999999999888754
No 77
>PRK06214 sulfite reductase; Provisional
Probab=99.89 E-value=9.4e-23 Score=186.98 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=121.3
Q ss_pred ceEeeeeeecCCC--CcEEEEEEecc----------CCCCcc----cCCCCEEEEee--eeeeeEecCCCCceEEEEEeC
Q 024591 85 EIVKMIFVGSHSD--GIFFNILYHAT----------CLLSLL----ISVNSMQSVAN--IIGRFRYQPGQVRAFGMTAGG 146 (265)
Q Consensus 85 ~~~r~ysis~~~~--~~~~~~~ik~~----------~~~S~~----~~~G~~v~i~g--p~G~~~~~~~~~~~~vlia~G 146 (265)
...|+|||++.+. .+.++|+|+.. |.+|+| +++|+.|.+.+ |.| |.++.+...++||||+|
T Consensus 314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~G 392 (530)
T PRK06214 314 LQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPADPNTPIIMVGPG 392 (530)
T ss_pred CCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCCCCCCCEEEEcCC
Confidence 6789999877663 67899999754 337777 78999998865 444 88765555799999999
Q ss_pred CChHHHHHHHHHHHhCCCCCcEEEEEEeeCC-CcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhh
Q 024591 147 SGITPMFQVTRAILENPNDKTKVHLIYANVT-YEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQT 225 (265)
Q Consensus 147 tGIap~~~~l~~l~~~~~~~~~i~L~~~~r~-~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~ 225 (265)
|||||+++++++..... ...+++|+|++|. ..|++|.+||+++.+..+. .++...+|++.......++++.+. ..+
T Consensus 393 TGIAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l-~~l~~afSRd~~~k~YVQ~~L~e~-~~~ 469 (530)
T PRK06214 393 TGIAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFYEDELNGLKAAGVL-TRLSLAWSRDGEEKTYVQDRMREN-GAE 469 (530)
T ss_pred eeHHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHHHHHHHHHHHhCCc-eEEEEEEecCCCCCCchhhHHHHH-HHH
Confidence 99999999999876542 2468899999965 6799999999999988765 677788887654333344444321 112
Q ss_pred hCCCCCCCcEEEEeCCHH-HHHHHHHHHHH
Q 024591 226 HCPAPASDIQVLRCGPPP-MNKAMAAHLEA 254 (265)
Q Consensus 226 ~~~~~~~~~~v~vCGp~~-~~~~~~~~l~~ 254 (265)
......++..||+|||.. |.++++..|.+
T Consensus 470 l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~ 499 (530)
T PRK06214 470 LWKWLEEGAHFYVCGDAKRMAKDVERALVD 499 (530)
T ss_pred HHhhhcCCcEEEEeCChHHHHHHHHHHHHH
Confidence 111113478899999976 55888877743
No 78
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.87 E-value=8.9e-22 Score=145.38 Aligned_cols=107 Identities=40% Similarity=0.805 Sum_probs=91.5
Q ss_pred EEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHH
Q 024591 142 MTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKE 221 (265)
Q Consensus 142 lia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~ 221 (265)
||||||||||++++++++++. +...+++|+|++|+.+|+++.++|.++.+++++++++..+ ++.++.|.+..|+++..
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~ 78 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDL 78 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHH
T ss_pred CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHH
Confidence 799999999999999999976 4668999999999999999999999999999887777666 66667788889999976
Q ss_pred HHhhhCC--CCCCCcEEEEeCCHHHHHHHHH
Q 024591 222 MIQTHCP--APASDIQVLRCGPPPMNKAMAA 250 (265)
Q Consensus 222 ~l~~~~~--~~~~~~~v~vCGp~~~~~~~~~ 250 (265)
.++.... ....+..||+|||+.|++++++
T Consensus 79 ~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 79 LLEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred HHHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 6565554 1246889999999999999874
No 79
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.87 E-value=2.9e-22 Score=163.85 Aligned_cols=211 Identities=18% Similarity=0.135 Sum_probs=147.0
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCC-cccCCCCCeEEEEee---------ceEeeeeeecCCCCcEEEEEEecc
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPT-SVLGLPIGQHISCRK---------EIVKMIFVGSHSDGIFFNILYHAT 108 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~pGq~v~l~~---------~~~r~ysis~~~~~~~~~~~ik~~ 108 (265)
-.+.|.+++|.+++.++.|+..+.+....++ +..+..|||||++.. ...|.||..++.-.+.++|.||+.
T Consensus 145 ~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~ 224 (385)
T KOG3378|consen 145 GWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV 224 (385)
T ss_pred CCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh
Confidence 5788999999999999999999999866552 456788999999986 233444445556678899999987
Q ss_pred CC--CCcc----cCCCCEEEEeeeeeeeEecC---CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCc
Q 024591 109 CL--LSLL----ISVNSMQSVANIIGRFRYQP---GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYE 179 (265)
Q Consensus 109 ~~--~S~~----~~~G~~v~i~gp~G~~~~~~---~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~ 179 (265)
.+ +|.+ +++||.|.++.|-|+|.+.. +...+++++|||+||||++++++..+.-. +.+++. |.-.. -
T Consensus 225 A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~-~~RP~~--~~~~~-~ 300 (385)
T KOG3378|consen 225 AGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCY-SSRPFK--QWLEQ-L 300 (385)
T ss_pred hchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcC-CCCcHH--HHHHH-H
Confidence 55 7887 99999999999999998864 45579999999999999999999876541 122211 11000 0
Q ss_pred ccccHHH---HHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCC
Q 024591 180 DILLKEE---LDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALG 256 (265)
Q Consensus 180 ~~~~~~~---l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~g 256 (265)
++-+++. -+.+.++..+ .+-..+.+. -...++++.+++.- ....++|.|||..+|+.+++.|.++|
T Consensus 301 ~~K~k~~~K~~e~~~~E~s~-~~~~IV~~~-------~~~iI~~~~L~~~~---~s~~DiY~~G~~~~M~~~~~~L~~L~ 369 (385)
T KOG3378|consen 301 KLKYKENLKLKEFFSEESSV-TKEQIVDEV-------MTRIINEEDLEKLD---LSECDIYMLGPNNYMRFVKQELVKLG 369 (385)
T ss_pred HHHHHHHHHHHHHHHHhhcc-chhhhhhhh-------hhhhcCHHHhhhcC---hhhCceeeeCcHHHHHHHHHHHHHhc
Confidence 0101110 1122222211 111111100 12256666676653 35788999999999999999999999
Q ss_pred CCCCCEEe
Q 024591 257 YTSEMLFQ 264 (265)
Q Consensus 257 v~~~~I~~ 264 (265)
+.++.||.
T Consensus 370 ~~~~~v~~ 377 (385)
T KOG3378|consen 370 VEPNKVQS 377 (385)
T ss_pred CCccceec
Confidence 99999874
No 80
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.1e-19 Score=171.27 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=153.7
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEeccCCCCcc----
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHATCLLSLL---- 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~~~~S~~---- 114 (265)
.++++.+...++.++..+.+..|.. +.++||||+.+.+ .++|||||++.++++++.++||..|++|+.
T Consensus 355 ~~~~i~~~~llp~~vi~L~~~Kp~~---f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~ 431 (646)
T KOG0039|consen 355 KNVKIAKVVLLPSDVLELIMSKPPG---FKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNA 431 (646)
T ss_pred cCceEEEEEEcCCCeEEEEEeCCCC---CCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHH
Confidence 3478999999999999999998853 9999999999998 899999977777999999999999997766
Q ss_pred cC------------CCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCC---------------CCc
Q 024591 115 IS------------VNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPN---------------DKT 167 (265)
Q Consensus 115 ~~------------~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~---------------~~~ 167 (265)
+. ..-++.|+||||....+....+.+++|++|+|++|+.|+++.++.+.+ ...
T Consensus 432 ~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~ 511 (646)
T KOG0039|consen 432 FSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLK 511 (646)
T ss_pred HhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceec
Confidence 22 255899999999976555677889999999999999999999986522 235
Q ss_pred EEEEEEeeCCCccc-ccHHHHHHHHHhCC-CCeEEEEEecCC--------------------CCC--------CCCcccC
Q 024591 168 KVHLIYANVTYEDI-LLKEELDGFAAKYP-DQFTIYYVLNQP--------------------PES--------WNGGVGF 217 (265)
Q Consensus 168 ~i~L~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~s~~--------------------~~~--------~~~~~g~ 217 (265)
++..+|.+|...++ .+.+.+.++..... +-.+++.+.++. ..+ ..-+.||
T Consensus 512 ~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gR 591 (646)
T KOG0039|consen 512 KVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGR 591 (646)
T ss_pred ceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCC
Confidence 68999998887766 44555555442211 102333333220 000 1114567
Q ss_pred CCHHHHhhhCCCCCCC--cEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 218 VSKEMIQTHCPAPASD--IQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 218 ~~~~~l~~~~~~~~~~--~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
++-+.+-+......++ ..|++|||+.|.+.+++.+.+...
T Consensus 592 Pn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 592 PNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSS 633 (646)
T ss_pred CCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhccc
Confidence 7754433333222223 799999999999999999988643
No 81
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.4e-18 Score=160.62 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=128.1
Q ss_pred eEeeeeeecCCC--CcEEEEEEecc----------CCCCcc----cCCCCEEEEeeeee-eeEecCCCCceEEEEEeCCC
Q 024591 86 IVKMIFVGSHSD--GIFFNILYHAT----------CLLSLL----ISVNSMQSVANIIG-RFRYQPGQVRAFGMTAGGSG 148 (265)
Q Consensus 86 ~~r~ysis~~~~--~~~~~~~ik~~----------~~~S~~----~~~G~~v~i~gp~G-~~~~~~~~~~~~vlia~GtG 148 (265)
.+|.|||++.+. .++++++|... |.+|.| +..|+.+.|....+ +|.++.+...++||||.|||
T Consensus 372 kPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTG 451 (587)
T COG0369 372 KPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGTG 451 (587)
T ss_pred CCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCCC
Confidence 579999776653 45666666432 225666 45599999988888 58888776689999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEEEEeeCC-CcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCC--HHHHhh
Q 024591 149 ITPMFQVTRAILENPNDKTKVHLIYANVT-YEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVS--KEMIQT 225 (265)
Q Consensus 149 Iap~~~~l~~l~~~~~~~~~i~L~~~~r~-~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~--~~~l~~ 225 (265)
|||+++++++....+ ...+.+||+++|+ ..|++|++|++++....-. .++...+||.......++.++. .+.+.+
T Consensus 452 IAPFRafvq~r~~~~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~-~~l~~AfSRdq~~KiYVQd~lre~~del~~ 529 (587)
T COG0369 452 IAPFRAFVQERAANG-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVL-TRLDLAFSRDQEEKIYVQDRLREQADELWE 529 (587)
T ss_pred chhHHHHHHHHHhcc-ccCceEEEecCCCCccchhhHHHHHHHHhcCCc-eeEEEEEeecCCCCccHHHHHHHhHHHHHH
Confidence 999999999998874 3458999999999 6799999999999887544 7888899988655555555544 344666
Q ss_pred hCCCCCCCcEEEEeC-CHHHHHHHHHHHHH
Q 024591 226 HCPAPASDIQVLRCG-PPPMNKAMAAHLEA 254 (265)
Q Consensus 226 ~~~~~~~~~~v~vCG-p~~~~~~~~~~l~~ 254 (265)
++. ++..+|+|| ...|.++|.++|.+
T Consensus 530 ~l~---~ga~~YVCGd~~~Ma~dV~~AL~~ 556 (587)
T COG0369 530 WLE---EGAHIYVCGDAKGMAKDVEEALLD 556 (587)
T ss_pred HHH---CCCEEEEeCCCccchHHHHHHHHH
Confidence 664 459999999 89999999998864
No 82
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.72 E-value=1e-16 Score=116.30 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=76.0
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeee-eecCCCCcEEEEEEeccCC--CCcc--
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIF-VGSHSDGIFFNILYHATCL--LSLL-- 114 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ys-is~~~~~~~~~~~ik~~~~--~S~~-- 114 (265)
+++|++++++++++..++|+.+.......+.||||+.|++ ...|+|| ++.+.+.+.++|+||..++ +|+|
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 5899999999999999999998765568899999999998 5689999 5555567899999999955 7888
Q ss_pred -cCCCCEEEEeeeeeeeEe
Q 024591 115 -ISVNSMQSVANIIGRFRY 132 (265)
Q Consensus 115 -~~~G~~v~i~gp~G~~~~ 132 (265)
+++||+|.++||+|+|.|
T Consensus 81 ~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 81 QLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp TSCTTSEEEEEEEESSEEE
T ss_pred hCCCCCEEEEEEcccccCC
Confidence 999999999999999975
No 83
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.70 E-value=5.8e-17 Score=149.97 Aligned_cols=166 Identities=12% Similarity=0.080 Sum_probs=120.4
Q ss_pred ceEeeeeeecCC--CCcEEEEEEec--c----------CCCCcc---cCCCCEEEEeeeeee--eEecCCCCceEEEEEe
Q 024591 85 EIVKMIFVGSHS--DGIFFNILYHA--T----------CLLSLL---ISVNSMQSVANIIGR--FRYQPGQVRAFGMTAG 145 (265)
Q Consensus 85 ~~~r~ysis~~~--~~~~~~~~ik~--~----------~~~S~~---~~~G~~v~i~gp~G~--~~~~~~~~~~~vlia~ 145 (265)
..+|+|||++++ ..+.+.+++-. . |-+|.| +++|+.+..-.|.+. |.++.+...++||||.
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGp 499 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGP 499 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcC
Confidence 789999977655 34555555432 1 226777 899999886666666 5556556679999999
Q ss_pred CCChHHHHHHHHHHHhCCC-----CCcEEEEEEeeCCCccc-ccHHHHHHHHHhCCCCeEEEEEecCCC-CCCCCcccCC
Q 024591 146 GSGITPMFQVTRAILENPN-----DKTKVHLIYANVTYEDI-LLKEELDGFAAKYPDQFTIYYVLNQPP-ESWNGGVGFV 218 (265)
Q Consensus 146 GtGIap~~~~l~~l~~~~~-----~~~~i~L~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~~~s~~~-~~~~~~~g~~ 218 (265)
|||||||+++++++....+ ... ++|++++|+.++. +|++|++++.+..-. .++...+||+. +.....+.++
T Consensus 500 GTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l-~~l~~A~SReq~~~k~YVQd~l 577 (645)
T KOG1158|consen 500 GTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGIL-TRLDVAFSREQTPKKIYVQDRL 577 (645)
T ss_pred CCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcc-hhheeeeeccCCCCceehhhHH
Confidence 9999999999999876421 223 8999999998855 999999999666545 77888999886 3323233333
Q ss_pred C--HHHHhhhCCCCCCCcEEEEeCCHH-HHHHHHHHHHH
Q 024591 219 S--KEMIQTHCPAPASDIQVLRCGPPP-MNKAMAAHLEA 254 (265)
Q Consensus 219 ~--~~~l~~~~~~~~~~~~v~vCGp~~-~~~~~~~~l~~ 254 (265)
. .+.+-+++. .++.++|+||... |++++.++|.+
T Consensus 578 ~e~~d~v~~~L~--~~~g~iYvCGd~~~Ma~dV~~~L~~ 614 (645)
T KOG1158|consen 578 REYADEVWELLK--KEGGHIYVCGDAKGMAKDVQDALVR 614 (645)
T ss_pred HHHHHHHHHHHh--cCCcEEEEecCCccchHHHHHHHHH
Confidence 2 223444443 3589999999999 99999988854
No 84
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.1e-13 Score=115.18 Aligned_cols=204 Identities=13% Similarity=0.148 Sum_probs=152.9
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCe-EEEEee-------------------------ceEeeeee
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQ-HISCRK-------------------------EIVKMIFV 92 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq-~v~l~~-------------------------~~~r~ysi 92 (265)
.....+.++|+.++++++++.+++|..++........+++ +|.|.+ ...|.||+
T Consensus 13 ~~~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTi 92 (265)
T COG2375 13 LGPRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTI 92 (265)
T ss_pred ccccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCccccee
Confidence 4566779999999999999999999998875433445554 999988 12799997
Q ss_pred -ecCCCCcEEEEEEeccCC---CCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCC
Q 024591 93 -GSHSDGIFFNILYHATCL---LSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPND 165 (265)
Q Consensus 93 -s~~~~~~~~~~~ik~~~~---~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~ 165 (265)
+.+.+.+++.+-+-.++. .|+| +++||++.|.||.|.+. ++...+.++|++.-|++..+.++++++-..
T Consensus 93 R~~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~-p~~~~~~~lLigDetAlPAIa~iLE~lp~~--- 168 (265)
T COG2375 93 RAVDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLV-PPEAADWYLLIGDETALPAIARILETLPAD--- 168 (265)
T ss_pred eeecccccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCC-CCCCcceEEEeccccchHHHHHHHHhCCCC---
Confidence 467888888887777743 8888 99999999999999954 445668999999999999999999988654
Q ss_pred CcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCC---CCCCcEEEEeCCH
Q 024591 166 KTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPA---PASDIQVLRCGPP 242 (265)
Q Consensus 166 ~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~---~~~~~~v~vCGp~ 242 (265)
.+.+.+..+.+.+|.. ++ ..+..+++..+...... ..+.++..+.+ +.++..+|+.|..
T Consensus 169 -~~~~a~lev~d~ad~~---~l-----~~~~~l~~~Wl~r~~~~---------~~~ll~~a~~~~~~P~~~~~vwiagE~ 230 (265)
T COG2375 169 -TPAEAFLEVDDAADRD---EL-----PSPDDLELEWLARDDAP---------TEQLLAAALAQAALPAGDYYVWIAGEA 230 (265)
T ss_pred -CceEEEEEeCChHHhh---cc-----CCCCceeEEEecCCCcc---------chHHHHHHHhcccCCCCceEEEEeccH
Confidence 4667888888876551 11 11222777776543211 22333333321 2345799999999
Q ss_pred HHHHHHHHHHHH-CCCCCCCEEe
Q 024591 243 PMNKAMAAHLEA-LGYTSEMLFQ 264 (265)
Q Consensus 243 ~~~~~~~~~l~~-~gv~~~~I~~ 264 (265)
++++.++..|+. .|+++++|+.
T Consensus 231 ~~v~~~Rk~L~~e~g~dk~~i~a 253 (265)
T COG2375 231 SAVKAIRKFLRNERGFDKSRVRA 253 (265)
T ss_pred HHHHHHHHHHhhhcCCCHHHhhh
Confidence 999999999975 6999988764
No 85
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.59 E-value=4.1e-15 Score=116.74 Aligned_cols=116 Identities=18% Similarity=0.365 Sum_probs=73.2
Q ss_pred CceEEEEEeCCChHHHHHHHHHHHhCC----CCCcEEEEEEeeCCCccc-ccHHHHHHHHHhCC-CCeEEEEEecCCCCC
Q 024591 137 VRAFGMTAGGSGITPMFQVTRAILENP----NDKTKVHLIYANVTYEDI-LLKEELDGFAAKYP-DQFTIYYVLNQPPES 210 (265)
Q Consensus 137 ~~~~vlia~GtGIap~~~~l~~l~~~~----~~~~~i~L~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~s~~~~~ 210 (265)
+++++|||||+||+|+++++++++... ...++|+|+|.+|+.+++ .+.++|.++..... ..+++..++++..+.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~ 80 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA 80 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence 478999999999999999999997542 246889999999999987 55545554433221 238888888763211
Q ss_pred -------------------------------CCCcccCCCHHHH-hhh-CCCCCCCcEEEEeCCHHHHHHHHHHH
Q 024591 211 -------------------------------WNGGVGFVSKEMI-QTH-CPAPASDIQVLRCGPPPMNKAMAAHL 252 (265)
Q Consensus 211 -------------------------------~~~~~g~~~~~~l-~~~-~~~~~~~~~v~vCGp~~~~~~~~~~l 252 (265)
..-..||++-+.+ .+. .........|++|||++|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 1124566664333 333 12335688999999999999999875
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.58 E-value=5.4e-14 Score=135.53 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=94.5
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-c-------eEeeeeee-cCCCCcEEEEEEeccCCCC
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-E-------IVKMIFVG-SHSDGIFFNILYHATCLLS 112 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~-------~~r~ysis-~~~~~~~~~~~ik~~~~~S 112 (265)
....++|++++.++++++.++++.|... ..++||||++|+. . ..+|+|++ .+++.+.++|+++..|..|
T Consensus 789 ~~l~~~Vv~~~~lap~i~~L~l~aP~iA--~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT 866 (1028)
T PRK06567 789 YLLTSRVNKINILDDKTFELIIHSPLAA--KNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKST 866 (1028)
T ss_pred hhhceEEEEEEEecCCEEEEEEeCcchh--hcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHH
Confidence 3447999999999999999999988742 4588999999986 1 44678854 5667889999999999988
Q ss_pred cc---cCCCCEEEEeeeeee-eEecCCCCceEEEEEeCCChHHHHHHHHHHHhCC
Q 024591 113 LL---ISVNSMQSVANIIGR-FRYQPGQVRAFGMTAGGSGITPMFQVTRAILENP 163 (265)
Q Consensus 113 ~~---~~~G~~v~i~gp~G~-~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~ 163 (265)
.. +++||.+.+.||+|+ |..+ ..+++++||||+|+|| +++++.+.+
T Consensus 867 ~~Ls~l~~Gd~v~v~GPLG~pF~i~--~~k~vLLVgGGVGiAp---Lak~Lk~~G 916 (1028)
T PRK06567 867 SLCKTLSENEKVVLMGPTGSPLEIP--QNKKIVIVDFEVGNIG---LLKVLKENN 916 (1028)
T ss_pred HHHhcCCCCCEEEEEcccCCCCCCC--CCCeEEEEEccccHHH---HHHHHHHCC
Confidence 87 899999999999998 5443 2468999999999997 557776654
No 87
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.52 E-value=2e-14 Score=126.64 Aligned_cols=161 Identities=12% Similarity=0.115 Sum_probs=119.9
Q ss_pred ceEeeeeeecCCCCcEEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChH
Q 024591 85 EIVKMIFVGSHSDGIFFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGIT 150 (265)
Q Consensus 85 ~~~r~ysis~~~~~~~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIa 150 (265)
-.+|.|||++.+....++++|..+ |-+|+| +++|+++.+.--.|.+.++.+...++|||+.|||+|
T Consensus 366 IrPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvA 445 (574)
T KOG1159|consen 366 IRPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVA 445 (574)
T ss_pred cccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccCCCCCCCeEEEcCCCCcc
Confidence 467999988888777788666433 227888 999999999988899877766668999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeeCCCc-ccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCC--HHHHhhhC
Q 024591 151 PMFQVTRAILENPNDKTKVHLIYANVTYE-DILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVS--KEMIQTHC 227 (265)
Q Consensus 151 p~~~~l~~l~~~~~~~~~i~L~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~--~~~l~~~~ 227 (265)
|+++++++..-++ ..+..||+++|+.+ |++|.++..++... ..+..+||..+....++.++. .+.+-+++
T Consensus 446 PfRa~i~er~~q~--~~~~~lFfGCR~K~~Df~y~~eW~~~~~~-----~~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll 518 (574)
T KOG1159|consen 446 PFRALIQERIYQG--DKENVLFFGCRNKDKDFLYEDEWTELNKR-----AFHTAFSRDQEQKVYVQHKIRENGEEVWDLL 518 (574)
T ss_pred cHHHHHHHHHhhc--cCCceEEEecccCCccccccchhhhhhcc-----hhhhhcccccccceeHHHHHHHhhHHHHHHH
Confidence 9999999988542 24458999999976 88999888777644 344577887664443333322 23344444
Q ss_pred CCCCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 228 PAPASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 228 ~~~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
. ..+..||+||+. .|-++|+.++.+
T Consensus 519 ~--~~gA~~fvaGsS~~MP~~V~~al~e 544 (574)
T KOG1159|consen 519 D--NLGAYFFVAGSSGKMPKDVKEALIE 544 (574)
T ss_pred h--ccCCEEEEecCCCCCcHHHHHHHHH
Confidence 3 468899999998 688888887754
No 88
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.00 E-value=3.2e-11 Score=88.26 Aligned_cols=83 Identities=11% Similarity=0.046 Sum_probs=6.4
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----c--eEeeeeeecCCCCcEEEEEEeccCCCCcc---
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----E--IVKMIFVGSHSDGIFFNILYHATCLLSLL--- 114 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~--~~r~ysis~~~~~~~~~~~ik~~~~~S~~--- 114 (265)
.+++.+++.+.+++.++++..+.. .+.++||||+.|++ . ++||||+++.++.+.+++.||..+++|+.
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~--~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~ 80 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSS--PFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYE 80 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCC--CCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHH
Confidence 467788899999999999987663 28899999999998 3 89999987777789999999999998876
Q ss_pred -c-------CCCCEEEEeeeeee
Q 024591 115 -I-------SVNSMQSVANIIGR 129 (265)
Q Consensus 115 -~-------~~G~~v~i~gp~G~ 129 (265)
+ ..+.++.|+||||.
T Consensus 81 ~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 81 HLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp ----------------TTSTTSH
T ss_pred HHhhhcccCCCceEEEEECCCCC
Confidence 2 23357888999996
No 89
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.81 E-value=2.5e-08 Score=74.23 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=59.8
Q ss_pred EEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----c---------------------eEeeee-eecCCCCc
Q 024591 47 KLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----E---------------------IVKMIF-VGSHSDGI 99 (265)
Q Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~---------------------~~r~ys-is~~~~~~ 99 (265)
+|++++.+++++.+++|..++........+|||+.|.+ . ..|.|| -+.+++.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 68999999999999999988865444467999999998 1 589999 56778889
Q ss_pred EEEEEEeccCC---CCcc---cCCCCEEEEeeeeeee
Q 024591 100 FFNILYHATCL---LSLL---ISVNSMQSVANIIGRF 130 (265)
Q Consensus 100 ~~~~~ik~~~~---~S~~---~~~G~~v~i~gp~G~~ 130 (265)
+++|-+..+++ .++| +++||+|.|.||.|.|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 99998888886 7888 9999999999999986
No 90
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=97.92 E-value=8.6e-05 Score=55.43 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=68.9
Q ss_pred ceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccC
Q 024591 138 RAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGF 217 (265)
Q Consensus 138 ~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~ 217 (265)
+.++|+|.-|++..+.++++++-. ..+.+++.-+.+.+|... +.. ..+ ++++.+..... ...+.
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~----~~~~~v~iev~~~~d~~~---l~~----~~~-~~v~wv~r~~~----~~~~~ 65 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPA----DAPGTVFIEVPDEADRQP---LPA----PAG-VEVTWVPRDGP----AAQGS 65 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-T----T-EEEEEEEESSGGG--------------TE-EEEEEEE-SS------TT-H
T ss_pred ceEEEEeccccHHHHHHHHHhCCC----CCeEEEEEEECChHhccc---CCC----CCC-CEEEEEeCCCC----CchHH
Confidence 578999999999999999998843 368888888888776442 222 223 88877765432 01112
Q ss_pred CCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHH-HCCCCCCCEEe
Q 024591 218 VSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLE-ALGYTSEMLFQ 264 (265)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~-~~gv~~~~I~~ 264 (265)
.-.+.++.... +.+...+|++|..++++.++.+|+ ++|+++++|+.
T Consensus 66 ~l~~al~~~~~-~~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~~~~~~ 112 (119)
T PF04954_consen 66 ALADALRDLPL-PAGDGYVWVAGEASAVRALRRHLREERGLPRDRIYA 112 (119)
T ss_dssp HHHHHHTTS----SS-EEEEEEEEHHHHHHHHHHHHHH----GGGEEE
T ss_pred HHHHHHHHhhc-cCCCeEEEEEecHHHHHHHHHHHHHhhCCCHHHeEE
Confidence 22223333322 246889999999999999999997 78999999874
No 91
>PLN02292 ferric-chelate reductase
Probab=84.29 E-value=2.1 Score=41.60 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 217 FVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
|++-..+-.... .++..|++|||+.|-.++.+.|+... .+|.|
T Consensus 652 rp~~~~i~~~~~--~~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~ 694 (702)
T PLN02292 652 RPNLNKLLVGLK--GSSVGVLVCGPKKMRQKVAKICSSGL--AENLH 694 (702)
T ss_pred CCCHHHHHHhcC--CCceeEEEECcHHHHHHHHHHHhcCC--Cccee
Confidence 555433333322 46889999999999999999998765 44554
No 92
>PLN02631 ferric-chelate reductase
Probab=82.76 E-value=2.8 Score=40.79 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 232 SDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 232 ~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
++..|++|||+.|-.++.+.|+... .+|.|
T Consensus 662 ~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~ 691 (699)
T PLN02631 662 EDVGVMVCGPRKMRHEVAKICSSGL--AKNLH 691 (699)
T ss_pred CceeEEEECcHHHHHHHHHHHhcCC--Cccee
Confidence 4889999999999999999998765 44554
No 93
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=80.53 E-value=2.2 Score=41.67 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=23.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
..+..|++|||++|..++.+.|+....
T Consensus 673 ~~~vgvlv~gp~~~~~~va~~~~~~~~ 699 (722)
T PLN02844 673 GSDIGVLVCGPETMKESVASMCRLKSQ 699 (722)
T ss_pred CCceeEEEeCchHHHHHHHHHHHhccc
Confidence 467899999999999999999987654
No 94
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=73.64 E-value=8.6 Score=31.65 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=29.6
Q ss_pred CCCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 39 DPENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
+....+.++|++.+.+++ ++++++|+.+.. ...|+||+++.|..
T Consensus 4 ~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~--~l~Y~pGD~l~V~P 52 (219)
T PF00667_consen 4 SRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDS--GLSYQPGDHLGVYP 52 (219)
T ss_dssp BTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS--TG---TT-EEEEE-
T ss_pred CCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC--CCcccCCCEEEEEc
Confidence 345567899999999987 489999998765 38899999999986
No 95
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=70.10 E-value=36 Score=30.99 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=28.1
Q ss_pred CCCeEEEEEEEEEEec---CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 40 PENFKEFKLVKRLQLS---HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
|..-...+|..+...- ..+..+++.++.++ ..++||+|+.+.+
T Consensus 274 ~~~~~~g~v~~i~p~vd~~trt~~vrv~l~N~~--~~L~pGm~v~v~i 319 (409)
T PRK09783 274 PDKTFTIRKWTLLPSVDAATRTLQLRLEVDNAD--EALKPGMNAWLQL 319 (409)
T ss_pred CCCEEEEEEEEEccccCCCCcEEEEEEEEeCCC--CccCCCCEEEEEE
Confidence 3333456666554322 35667777776653 5689999999988
No 96
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=64.50 E-value=26 Score=29.21 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=35.7
Q ss_pred EEEEeC-CChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEE
Q 024591 141 GMTAGG-SGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYV 203 (265)
Q Consensus 141 vlia~G-tGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~ 203 (265)
++|.|+ =||. +++.++++... .--+++..+|+++.. ..+++.+....++ +|+...
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~~---~i~~iiat~r~~e~a--~~~l~~k~~~d~r-vHii~L 61 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKDK---GIEVIIATARDPEKA--ATELALKSKSDSR-VHIIQL 61 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcCC---CcEEEEEecCChHHh--hHHHHHhhccCCc-eEEEEE
Confidence 566665 3776 57888888653 345667777777654 5666666655656 776654
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=62.34 E-value=14 Score=32.72 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.0
Q ss_pred ceEEEEEeCCC--hHHHHHHHHHHHhC
Q 024591 138 RAFGMTAGGSG--ITPMFQVTRAILEN 162 (265)
Q Consensus 138 ~~~vlia~GtG--Iap~~~~l~~l~~~ 162 (265)
+++++.||||| |-|.+++++++.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 47899999997 99999999999864
No 98
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=61.74 E-value=14 Score=27.55 Aligned_cols=66 Identities=26% Similarity=0.287 Sum_probs=42.1
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCH------------HHHHHHHHHHHHCCC
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPP------------PMNKAMAAHLEALGY 257 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~------------~~~~~~~~~l~~~gv 257 (265)
....+|..+++..+. -.|+++...+.+.+..-.++..|.-|.|. .-+..+++.|.+.|+
T Consensus 21 ~~~~~p~~vriIrvp---------C~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 21 SRLQYPPNVRIIRVP---------CSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGI 91 (124)
T ss_pred ccCCCCCCeEEEEcc---------CCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Confidence 344555546655432 25788888877776542334444446653 245677889999999
Q ss_pred CCCCEEe
Q 024591 258 TSEMLFQ 264 (265)
Q Consensus 258 ~~~~I~~ 264 (265)
+++++..
T Consensus 92 ~~eRv~~ 98 (124)
T PF02662_consen 92 EPERVRL 98 (124)
T ss_pred ChhHeEE
Confidence 9999864
No 99
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=57.31 E-value=60 Score=22.29 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=46.2
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEeeceEeeeeeecCCCCcEEEEEEeccCC-CCcc--cCCCCEE
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRKEIVKMIFVGSHSDGIFFNILYHATCL-LSLL--ISVNSMQ 121 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~~~~r~ysis~~~~~~~~~~~ik~~~~-~S~~--~~~G~~v 121 (265)
..+|.++++. ++..+++++.|.. ....+..|++|.+. +. ..|+..-. .+.|++.+-.+.- .|.. +++|++|
T Consensus 7 ~g~I~~i~~~-~~~~~~~i~~~~~-~~~~~~~g~SIavn-Gv--cLTV~~~~-~~~f~~~l~~eTl~~T~l~~~~~G~~V 80 (85)
T PF00677_consen 7 TGKIISIEKN-GDSQRLRIEIPDK-ILSDLKIGGSIAVN-GV--CLTVTDIN-EDWFEVDLIPETLRRTTLGNLKVGDRV 80 (85)
T ss_dssp EEEEEEEEEE-SSEEEEEEEESTG-GGGTG-TTSEEEET-TE--EEEEEEEE-TTEEEEEEEHHHHHCSSGGG--TTSEE
T ss_pred EEEEEEEEEC-CCCEEEEEEcCHH-HHhhCccCcEEEEC-Ce--eeEEEEec-CCEEEEechHHHhhhchhccCCCCCEE
Confidence 4667777765 5577899998843 24578899988877 44 34422211 4567777765543 4544 8999999
Q ss_pred EEe
Q 024591 122 SVA 124 (265)
Q Consensus 122 ~i~ 124 (265)
.++
T Consensus 81 NlE 83 (85)
T PF00677_consen 81 NLE 83 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 100
>TIGR03500 FliO_TIGR flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.
Probab=56.09 E-value=54 Score=21.39 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhccCCC--CCCCCeEEEEEEEEEEecCCEEEEEEECCCC
Q 024591 22 LAIAVGAAYLFSSKKP--KDPENFKEFKLVKRLQLSHNVAKFTFELPTP 68 (265)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 68 (265)
++++.+++|+...... +....-...++++..+++++-....++..+.
T Consensus 5 l~li~~~~~~~~r~~~~~~~~~~~~~i~vl~~~~Lg~~~~l~vV~v~~~ 53 (69)
T TIGR03500 5 LALIIALAWLLKRFGSTGKNGQGGKGLKVLESLPLGPKESLVLVEVGDR 53 (69)
T ss_pred HHHHHHHHHHHHHhCcccCCCCCCccEEEEEEEeECCCCEEEEEEECCE
Confidence 3444445555433332 2233334589999999999888777776554
No 101
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=55.17 E-value=55 Score=27.06 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=22.8
Q ss_pred CceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCC
Q 024591 137 VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTY 178 (265)
Q Consensus 137 ~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~ 178 (265)
..++++-+|++||. +.+.+...+.++ +++.+.|+.
T Consensus 5 gnTiLITGG~sGIG--l~lak~f~elgN-----~VIi~gR~e 39 (245)
T COG3967 5 GNTILITGGASGIG--LALAKRFLELGN-----TVIICGRNE 39 (245)
T ss_pred CcEEEEeCCcchhh--HHHHHHHHHhCC-----EEEEecCcH
Confidence 35677777778998 567777776642 345566654
No 102
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=52.23 E-value=20 Score=23.75 Aligned_cols=27 Identities=4% Similarity=-0.086 Sum_probs=19.1
Q ss_pred cEEEEEEeccCC---CCcc-----cCCCCEEEEee
Q 024591 99 IFFNILYHATCL---LSLL-----ISVNSMQSVAN 125 (265)
Q Consensus 99 ~~~~~~ik~~~~---~S~~-----~~~G~~v~i~g 125 (265)
-++.+.|...++ .+.| ++|||+++|+-
T Consensus 29 ~syr~~Vq~NGnLLIG~AYT~~m~L~PGdEFeI~L 63 (71)
T PF14250_consen 29 ASYRVSVQGNGNLLIGSAYTKQMGLKPGDEFEIKL 63 (71)
T ss_pred ceEEEEEecCCCEEEcHHHHHHhCCCCCCEEEEEe
Confidence 346666666666 4444 99999999874
No 103
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=51.50 E-value=37 Score=30.52 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=33.1
Q ss_pred cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCC-CCCcEEEEeCCHHHHHHHHHH
Q 024591 179 EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP-ASDIQVLRCGPPPMNKAMAAH 251 (265)
Q Consensus 179 ~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~-~~~~~v~vCGp~~~~~~~~~~ 251 (265)
+.+.+.+.++.-.+.....++...++..+ +.+++.+... .....|++||++..++.+...
T Consensus 167 dCf~~i~al~a~~~~f~~~~~~~~~l~~~-------------~~~~~il~~~~~~sRIiImCG~p~~ir~lm~~ 227 (380)
T cd06369 167 DCFWYINALEAGVAYFSSALKFKELLRTE-------------EELQKLLTDKNRKSNVIIMCGTPEDIVNLKGD 227 (380)
T ss_pred ceeeEhHhhhhhhhhhhhcccceeeecCc-------------hhHHHHHHHhccCccEEEEeCCHHHHHHHHhc
Confidence 35566666665554433334443332211 2233443322 345589999999998887664
No 104
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=50.89 E-value=1.4e+02 Score=24.79 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=27.0
Q ss_pred eEEEEEEEEEEecC---CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 43 FKEFKLVKRLQLSH---NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 43 ~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
..+.+|.++....+ ..+.+++.++.+. ..+.+|+++.+.+
T Consensus 154 ~~~g~v~~I~~~~~~~~~~~~v~~~~~~~~--~~l~~G~~v~v~i 196 (265)
T TIGR00999 154 PLPARVDYVGPEVDGSSRTAKVRVLIKNEN--LTLKPGLFVQVRV 196 (265)
T ss_pred EEEEEEEEEccccCCCCceEEEEEEEeCCC--CccCCCCEEEEEE
Confidence 35677777764432 4556666665542 4589999999998
No 105
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=49.72 E-value=99 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.042 Sum_probs=26.1
Q ss_pred EEEEEEEEEEec---CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 44 KEFKLVKRLQLS---HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 44 ~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
...+|..+...- ..++.+++.++... ..+.||+|+.+++
T Consensus 272 ~~G~v~~I~~~id~~t~t~~v~a~~~n~~--~~L~pG~~v~v~i 313 (415)
T PRK11556 272 SEGTLLSLDNQIDATTGTIKLKARFNNQD--DALFPNQFVNARM 313 (415)
T ss_pred eeeEEEEeeccccCCCCEEEEEEEeCCCC--CccCCCCEEEEEE
Confidence 456777666432 35666666666643 4588999999987
No 106
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=49.54 E-value=49 Score=24.57 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=33.4
Q ss_pred ccCCCHHHHhhhCCCCCCCcEE-----------EEeCCH---HHHHHHHHHHHHCCCCCCCEEe
Q 024591 215 VGFVSKEMIQTHCPAPASDIQV-----------LRCGPP---PMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 215 ~g~~~~~~l~~~~~~~~~~~~v-----------~vCGp~---~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
.||++.+.+.+.+.. +-..| |..|+- .=++.+++.|.+.|+.+++++.
T Consensus 38 sGrvn~~fvl~Al~~--GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~ 99 (132)
T COG1908 38 SGRVNPEFVLKALRK--GADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRV 99 (132)
T ss_pred cCccCHHHHHHHHHc--CCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEE
Confidence 578888877666542 23334 445553 4566778999999999999975
No 107
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=47.46 E-value=26 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=27.8
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 233 DIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 233 ~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
...-.+-||+.-++.++.+|+..|-|.+.|-.
T Consensus 47 tvkG~leGp~~~vd~mk~wl~~~gsP~s~I~~ 78 (98)
T KOG3360|consen 47 TVKGQLEGPPEKVDEMKEWLLTRGSPVSAIDR 78 (98)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCChhHheee
Confidence 44568999999999999999999999888743
No 108
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=46.61 E-value=71 Score=28.83 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=24.3
Q ss_pred EEEEEEEEEec---CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 45 EFKLVKRLQLS---HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 45 ~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
..+|..+.... ..++.+++.++.+. ..++||+++.+++
T Consensus 257 ~g~v~~i~~~~d~~trt~~V~~~~~n~~--~~L~pGm~~~v~i 297 (397)
T PRK15030 257 DGTLEFSDVTVDQTTGSITLRAIFPNPD--HTLLPGMFVRARL 297 (397)
T ss_pred ceEEEEeeccccCCCCeEEEEEEEeCCC--CcccCCCEEEEEE
Confidence 35555443322 34666666666553 4689999999998
No 109
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=44.44 E-value=1.2e+02 Score=23.79 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=12.7
Q ss_pred cCCCCEEEEeeeeeee
Q 024591 115 ISVNSMQSVANIIGRF 130 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~~ 130 (265)
++.|.+++++++.=.|
T Consensus 144 vkiG~~~~le~~~y~~ 159 (168)
T PF14221_consen 144 VKIGTPVELEGGNYNF 159 (168)
T ss_pred EeccceEEEECceEEE
Confidence 8999999998875543
No 110
>PRK06214 sulfite reductase; Provisional
Probab=44.33 E-value=92 Score=29.51 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 40 PENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
....+.++|++.+.+++ ++++++|+++.. ...|+||+++-|.-
T Consensus 165 ~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~--~l~Y~~GD~l~V~P 212 (530)
T PRK06214 165 RDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGS--GLDYEVGDSLGLFP 212 (530)
T ss_pred cCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCC--CCccCCCCEEEEec
Confidence 34445789999998885 499999998754 37899999999865
No 111
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=42.84 E-value=24 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=21.6
Q ss_pred CchhhhhccchhhHHHHHHHHHHHHHHHhh
Q 024591 1 MDMEYLQNLDVQLLVGGAVAVLAIAVGAAY 30 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (265)
|-|+++|..+---.+..|.++.+++.+...
T Consensus 7 mgm~~imsistlallllaevlvaiiligis 36 (83)
T PF13214_consen 7 MGMNHIMSISTLALLLLAEVLVAIILIGIS 36 (83)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHhhhce
Confidence 678999887777777777777776665544
No 112
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=41.51 E-value=2e+02 Score=25.19 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=43.4
Q ss_pred eEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCe--EEEEE
Q 024591 139 AFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQF--TIYYV 203 (265)
Q Consensus 139 ~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~--~~~~~ 203 (265)
++.++++|..+-++.-++.+++..+ ..+++++..+.+.-.--+.+.+++|...+..++ +++.+
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n--~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I 66 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFS--QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPI 66 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhC--CCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEE
Confidence 4778999999999999999987763 357777777765333445566888866544445 55444
No 113
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=41.21 E-value=1.5e+02 Score=25.72 Aligned_cols=85 Identities=8% Similarity=-0.048 Sum_probs=47.3
Q ss_pred CCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEE---EEee--------ceEeeeeeecCCCCcEEEEEEeccC
Q 024591 41 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHI---SCRK--------EIVKMIFVGSHSDGIFFNILYHATC 109 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v---~l~~--------~~~r~ysis~~~~~~~~~~~ik~~~ 109 (265)
-....++|.++++++.+=+.+.=+..-...--+.-.|++- +|-. ...|||-++. +.+.--|+.-+
T Consensus 197 ~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRVNA----G~VhaYi~vPg 272 (376)
T COG1465 197 LELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRVNA----GAVHAYIRVPG 272 (376)
T ss_pred eEEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEecccccCcccccCceeecc----cceeEEEEcCC
Confidence 3456789999999887533322111110000111222221 1111 3445555543 44666777777
Q ss_pred CCCcc---cCCCCEEEEeeeeee
Q 024591 110 LLSLL---ISVNSMQSVANIIGR 129 (265)
Q Consensus 110 ~~S~~---~~~G~~v~i~gp~G~ 129 (265)
+-|+| ++.||+|.|-.--|.
T Consensus 273 ~kTkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 273 GKTKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred CceEEhhhhcCCCeEEEEecCCc
Confidence 78888 999999998665554
No 114
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=40.84 E-value=2.1e+02 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=25.0
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 233 DIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 233 ~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
....++|....|.-.+..+|+++|++ ++|.
T Consensus 190 ~~~ai~~~nd~~A~g~l~al~~~G~~-~dv~ 219 (280)
T cd06303 190 DVDFIYACSTDIALGASDALKELGRE-DDIL 219 (280)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCC-CCcE
Confidence 45678899999999999999999997 5553
No 115
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=40.14 E-value=36 Score=26.51 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=24.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEeC
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~~ 265 (265)
..+.+.|+++.+.+ ++.|.+.|+++++|+.+
T Consensus 135 ~~~~D~y~Vase~~----~~~l~~~Gi~~~~I~vt 165 (169)
T PF06925_consen 135 HPGVDRYFVASEEV----KEELIERGIPPERIHVT 165 (169)
T ss_pred cCCCCEEEECCHHH----HHHHHHcCCChhHEEEe
Confidence 45778899999855 55566799999999863
No 116
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=39.24 E-value=93 Score=29.94 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=32.7
Q ss_pred eEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 43 FKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 43 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
...++|++.+.+++ ++++++|+++.. ...|+||+++-|.-
T Consensus 234 p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~--~~~Y~~GD~l~V~P 278 (597)
T TIGR01931 234 PFRAEVLENQKITGRNSKKDVRHIEIDLEGS--GLHYEPGDALGVWY 278 (597)
T ss_pred CeEEEEEeeEecCCCCCCceEEEEEEecCCC--CCccCCCCEEEEEe
Confidence 45789999998873 699999998754 37899999999975
No 117
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=38.70 E-value=1e+02 Score=27.64 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=25.7
Q ss_pred EEEEEEEEEec---CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 45 EFKLVKRLQLS---HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 45 ~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
..+|..+.... ..+..+++.++.+. ..++||+++.+.+
T Consensus 253 ~g~v~~i~~~~d~~t~t~~v~~~~~n~~--~~l~pGm~v~v~i 293 (385)
T PRK09859 253 TGTLKFSDPTVDETTGSVTLRAIFPNPN--GDLLPGMYVTALV 293 (385)
T ss_pred ceEEEEecCccCCCCCeEEEEEEEECCC--CeECCCCEEEEEE
Confidence 46666665333 34666777666653 4699999999998
No 118
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=38.65 E-value=74 Score=29.31 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=34.9
Q ss_pred eEEEEEeCCChHHHHHHHHHHHhCCC--CCcEEEEEEeeCCCccc-ccHHHHHHHHHhCCCCeEEEEEecC
Q 024591 139 AFGMTAGGSGITPMFQVTRAILENPN--DKTKVHLIYANVTYEDI-LLKEELDGFAAKYPDQFTIYYVLNQ 206 (265)
Q Consensus 139 ~~vlia~GtGIap~~~~l~~l~~~~~--~~~~i~L~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~~~s~ 206 (265)
++++|+|||..+| .+++.++.... +...+.|+ .-+++.+ ......+++.++....+++....++
T Consensus 2 KI~iIGaGS~~tp--~li~~l~~~~~~l~~~ei~L~--DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr 68 (437)
T cd05298 2 KIVIAGGGSTYTP--GIVKSLLDRKEDFPLRELVLY--DIDAERQEKVAEAVKILFKENYPEIKFVYTTDP 68 (437)
T ss_pred eEEEECCcHHHHH--HHHHHHHhCcccCCCCEEEEE--CCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCH
Confidence 6889999997666 68888887632 22344333 2232212 2333344554544333666655544
No 119
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.62 E-value=10 Score=27.00 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=40.1
Q ss_pred eCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCC-CcccccHHHHHHHHHhCCCCeEEE--EEecCCCCCCCCcccCCCHH
Q 024591 145 GGSGITPMFQVTRAILENPNDKTKVHLIYANVT-YEDILLKEELDGFAAKYPDQFTIY--YVLNQPPESWNGGVGFVSKE 221 (265)
Q Consensus 145 ~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~-~~~~~~~~~l~~l~~~~~~~~~~~--~~~s~~~~~~~~~~g~~~~~ 221 (265)
|+.-|......++.+.+.+ .++.+ ..+.+ ...--+.+.|..+. +.+. -+++ .+....+
T Consensus 12 g~~~ipga~e~l~~L~~~g---~~~~~-lTNns~~s~~~~~~~L~~~G------i~~~~~~i~t---------s~~~~~~ 72 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERG---KPVVF-LTNNSSRSREEYAKKLKKLG------IPVDEDEIIT---------SGMAAAE 72 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTT---SEEEE-EES-SSS-HHHHHHHHHHTT------TT--GGGEEE---------HHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHcC---CCEEE-EeCCCCCCHHHHHHHHHhcC------cCCCcCEEEC---------hHHHHHH
Confidence 5556677777888887764 34433 33333 22233344444332 2221 1111 1233334
Q ss_pred HHhhhCCCCCCCcEEEEeCCHHHHHHHH
Q 024591 222 MIQTHCPAPASDIQVLRCGPPPMNKAMA 249 (265)
Q Consensus 222 ~l~~~~~~~~~~~~v~vCGp~~~~~~~~ 249 (265)
.+++. .....+|+.|++++.+.++
T Consensus 73 ~l~~~----~~~~~v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 73 YLKEH----KGGKKVYVLGSDGLREELR 96 (101)
T ss_dssp HHHHH----TTSSEEEEES-HHHHHHHH
T ss_pred HHHhc----CCCCEEEEEcCHHHHHHHH
Confidence 45543 3578899999997766554
No 120
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=38.38 E-value=34 Score=26.02 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=19.6
Q ss_pred CcEEEEeC------CHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 233 DIQVLRCG------PPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 233 ~~~v~vCG------p~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
...+++|| ...-...+++.|.+.|+|.++|..
T Consensus 38 ~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~ 75 (155)
T PF02698_consen 38 APRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIIL 75 (155)
T ss_dssp T--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEE
T ss_pred CCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEc
Confidence 45688888 556778888889888999888753
No 121
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=37.93 E-value=53 Score=30.11 Aligned_cols=64 Identities=16% Similarity=0.367 Sum_probs=34.1
Q ss_pred eEEEEEeCCChHHHHHHHHHHHhCCC--CCcEEEEEEeeCCCccc-ccHHHHHHHHHhCCCCeEEEEEecC
Q 024591 139 AFGMTAGGSGITPMFQVTRAILENPN--DKTKVHLIYANVTYEDI-LLKEELDGFAAKYPDQFTIYYVLNQ 206 (265)
Q Consensus 139 ~~vlia~GtGIap~~~~l~~l~~~~~--~~~~i~L~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~~~s~ 206 (265)
++++|+|||..+| .+++.++.... +...+.|+ .-+++.+ ......+++.++....+++....++
T Consensus 2 KI~iIGgGS~~tp--~li~~l~~~~~~l~~~ei~L~--Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~ 68 (425)
T cd05197 2 KIAIIGGGSSFTP--ELVSGLLKTPEELPISEVTLY--DIDEERLDIILTIAKRYVEEVGADIKFEKTMDL 68 (425)
T ss_pred EEEEECCchHhHH--HHHHHHHcChhhCCCCEEEEE--cCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCH
Confidence 5789999997665 67888887642 22344333 2222212 1233334454443323666655544
No 122
>PLN02343 allene oxide cyclase
Probab=36.98 E-value=63 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=26.5
Q ss_pred EEEEEeccCC--CCcc-------cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChH
Q 024591 101 FNILYHATCL--LSLL-------ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGIT 150 (265)
Q Consensus 101 ~~~~ik~~~~--~S~~-------~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIa 150 (265)
+.++|+..+. ..+| +-.-..+.+.|||=.+ + +..+-|.||+||=
T Consensus 112 ~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpylty--e----Dt~LaiTGGsGiF 164 (229)
T PLN02343 112 LCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTY--E----DTYLAITGGSGIF 164 (229)
T ss_pred eEEEEEeccccCCceeEEEEEEEecCcceeEEecccccc--c----cceEEeecCccee
Confidence 6677776654 2332 2233355666665442 2 5688999999984
No 123
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=36.93 E-value=98 Score=28.20 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=31.6
Q ss_pred EEEEEEEEEEecC----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 44 KEFKLVKRLQLSH----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 44 ~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
..++|++.+.+++ +++++.|+.+.. ...|+||+++.|.-
T Consensus 6 ~~~~v~~~~~lt~~~~~~~~~~~ld~~~~--~~~Y~~GD~l~I~p 48 (416)
T cd06204 6 FLAPVAVSRELFTGSDRSCLHIEFDISGS--GIRYQTGDHLAVWP 48 (416)
T ss_pred eEeEEEEEeeccCCCCccEEEEEEeCCCC--CCcccCCCEEEEEc
Confidence 3788888888874 789999997663 37899999999975
No 124
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=36.70 E-value=3.3e+02 Score=24.75 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=65.4
Q ss_pred ceEEEEEeCCChHHHHHHHHHHHhCCCC----CcEEEEEEeeCCCcc---cccHHHHHHHHHhCCCCeEEEEEecCCCCC
Q 024591 138 RAFGMTAGGSGITPMFQVTRAILENPND----KTKVHLIYANVTYED---ILLKEELDGFAAKYPDQFTIYYVLNQPPES 210 (265)
Q Consensus 138 ~~~vlia~GtGIap~~~~l~~l~~~~~~----~~~i~L~~~~r~~~~---~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~ 210 (265)
++.|+++.|+-=-| ++.+..+...+.. ...-.++++++..-. ......++.+..+. + .++..-
T Consensus 286 ~~~vii~tg~~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~-~-~~~~~~------- 355 (422)
T TIGR00649 286 ENYLIITTGSQGEP-YAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEV-G-ARVIKR------- 355 (422)
T ss_pred ccEEEEEeCCCCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhc-C-CEEEec-------
Confidence 57888887776556 4555556554211 011247777654321 11111122122222 2 333210
Q ss_pred CCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 211 WNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 211 ~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
....|....+.+..++...+....+-+-|...+.....+.+++.|++.++++.
T Consensus 356 -~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~~a~~~g~~~~~~~~ 408 (422)
T TIGR00649 356 -IHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTKLAEEEGYPGENIFI 408 (422)
T ss_pred -eEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHHHHHHcCCCcccEEE
Confidence 01133444455666555445677888899999999999999999999888763
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=35.32 E-value=1.2e+02 Score=27.24 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=19.4
Q ss_pred CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 57 NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
.+..+++.++.+. ..+.||+++.+.+
T Consensus 271 ~t~~V~~~~~n~~--~~L~pGm~~~v~i 296 (385)
T PRK09578 271 DTVAMRALFPNPE--RELLPGAYVRIAL 296 (385)
T ss_pred CeEEEEEEEeCCC--CcCCCCCEEEEEE
Confidence 4566676666653 4689999999998
No 126
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=34.93 E-value=2.9e+02 Score=23.56 Aligned_cols=41 Identities=15% Similarity=-0.079 Sum_probs=29.1
Q ss_pred CeEEEEEEEEEEecC---CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 42 NFKEFKLVKRLQLSH---NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
.-...+|..+....+ ....+++.++.. ...+.+|+++.+.+
T Consensus 201 ~~~~g~I~~I~~~~~~~~~~~~v~~~~~~~--~~~l~~G~~v~v~i 244 (322)
T TIGR01730 201 EEFKGKLRFIDPRVDSGTGTVRVRATFPNP--DGRLLPGMFGRVTI 244 (322)
T ss_pred ceEeEEEEEEeccccCCCCeEEEEEEEcCC--CCcCCCCCEEEEEE
Confidence 345677777765443 567777776664 36689999999987
No 127
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=34.83 E-value=2.3e+02 Score=22.44 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCC
Q 024591 151 PMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP 230 (265)
Q Consensus 151 p~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~ 230 (265)
....+++.+.+.+ ..++-+++...........+.+++..++.+ +++......... .. -..+.+.+.+...
T Consensus 111 ~~~~~~~~l~~~~--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~~~~~l~~~ 180 (269)
T cd01391 111 AGEAAAEYLAEKG--WKRVALIYGDDGAYGRERLEGFKAALKKAG--IEVVAIEYGDLD-----TE-KGFQALLQLLKAA 180 (269)
T ss_pred HHHHHHHHHHHhC--CceEEEEecCCcchhhHHHHHHHHHHHhcC--cEEEeccccCCC-----cc-ccHHHHHHHHhcC
Confidence 3445556655553 578888887653222233444555554442 333222111110 00 1112333343321
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
.....+++|+. .+...+...+.+.|+.++++.
T Consensus 181 ~~~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ 212 (269)
T cd01391 181 PKPDAIFACND-EMAAGALKAAREAGLTPGDIS 212 (269)
T ss_pred CCCCEEEEcCc-hHHHHHHHHHHHcCCCCCCCE
Confidence 12344555554 899999999999998755543
No 128
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=34.78 E-value=38 Score=27.78 Aligned_cols=24 Identities=4% Similarity=-0.099 Sum_probs=14.4
Q ss_pred ceEeeeeeecCC--CCcEEEEEEecc
Q 024591 85 EIVKMIFVGSHS--DGIFFNILYHAT 108 (265)
Q Consensus 85 ~~~r~ysis~~~--~~~~~~~~ik~~ 108 (265)
...|.|||++.+ ..+.++++|...
T Consensus 177 l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 177 LQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp ---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCcceeecccccCCCCEEEEEEEEE
Confidence 688999977665 467888888765
No 129
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=34.43 E-value=2.1e+02 Score=21.93 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=50.2
Q ss_pred EEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCH
Q 024591 141 GMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSK 220 (265)
Q Consensus 141 vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~ 220 (265)
|+|.|+||-.-- .+++++++++ .++++ .+|+.+.. .+ .++ +++... + ..+.
T Consensus 1 I~V~GatG~vG~-~l~~~L~~~~---~~V~~--~~R~~~~~------~~----~~~-~~~~~~--d----------~~d~ 51 (183)
T PF13460_consen 1 ILVFGATGFVGR-ALAKQLLRRG---HEVTA--LVRSPSKA------ED----SPG-VEIIQG--D----------LFDP 51 (183)
T ss_dssp EEEETTTSHHHH-HHHHHHHHTT---SEEEE--EESSGGGH------HH----CTT-EEEEES--C----------TTCH
T ss_pred eEEECCCChHHH-HHHHHHHHCC---CEEEE--EecCchhc------cc----ccc-ccccee--e----------ehhh
Confidence 689999998875 6889888874 45544 55775522 11 334 665432 1 1222
Q ss_pred HHHhhhCCCCCCCcEEEEeCC----HHHHHHHHHHHHHCCCC
Q 024591 221 EMIQTHCPAPASDIQVLRCGP----PPMNKAMAAHLEALGYT 258 (265)
Q Consensus 221 ~~l~~~~~~~~~~~~v~vCGp----~~~~~~~~~~l~~~gv~ 258 (265)
+.+.+.+.. -+..+++.|+ ...++.+.+.+++.|++
T Consensus 52 ~~~~~al~~--~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 52 DSVKAALKG--ADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp HHHHHHHTT--SSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred hhhhhhhhh--cchhhhhhhhhcccccccccccccccccccc
Confidence 456666553 2344444443 44566667777777754
No 130
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.29 E-value=2.3e+02 Score=22.21 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=19.3
Q ss_pred ccCCCCCCCCeEEEEEEEEEEecCC
Q 024591 33 SSKKPKDPENFKEFKLVKRLQLSHN 57 (265)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~~~~~~~~ 57 (265)
++.+|..|......++++-..++++
T Consensus 21 sss~~~~pp~~l~l~l~a~~~~Np~ 45 (159)
T COG3521 21 SSSKPLLPPSRLDLTLTAAPDLNPN 45 (159)
T ss_pred ccCCCCCCCcEEEEEEEecCCcCCC
Confidence 6777777777778888888777776
No 131
>PRK08309 short chain dehydrogenase; Provisional
Probab=34.09 E-value=2.3e+02 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=21.1
Q ss_pred EEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCC
Q 024591 141 GMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTY 178 (265)
Q Consensus 141 vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~ 178 (265)
++|.||+|+. .++.+.+.+.+ .++.+. .|+.
T Consensus 3 vlVtGGtG~g--g~la~~L~~~G---~~V~v~--~R~~ 33 (177)
T PRK08309 3 ALVIGGTGML--KRVSLWLCEKG---FHVSVI--ARRE 33 (177)
T ss_pred EEEECcCHHH--HHHHHHHHHCc---CEEEEE--ECCH
Confidence 6788889987 35888888764 456554 4553
No 132
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=33.67 E-value=2.7e+02 Score=22.80 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=47.5
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEeeceEeeeeeecCCCCcEEEEEEeccCC-CCcc--cCCCCEE
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRKEIVKMIFVGSHSDGIFFNILYHATCL-LSLL--ISVNSMQ 121 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~~~~r~ysis~~~~~~~~~~~ik~~~~-~S~~--~~~G~~v 121 (265)
.++|.++++.. +..+++++.|... .....+|..|.+. +. ..|+..- +++.|.+.+-.+.- .|.. +++|+.|
T Consensus 9 vg~I~~i~~~~-~~~~l~i~~~~~~-~~~l~~g~SIavn-GV--cLTV~~v-~~~~f~~~lipeTl~~T~l~~~~~G~~V 82 (206)
T PRK13020 9 TAEVVAIHKKD-GLNTLEIAFPPEL-LEGLEIGASVAVN-GV--CLTVTKI-EGDRVFFDVMEETLRLTNLADLRVGDRV 82 (206)
T ss_pred EEEEEEEEECC-CcEEEEEEeChhH-hccCCCCCEEEEC-CE--EEEEEEE-CCCEEEEEEhHHHHhhCchhhccCCCEE
Confidence 46777777744 4567888877541 2467899999887 33 4453322 23457776643322 4443 8899999
Q ss_pred EEeee
Q 024591 122 SVANI 126 (265)
Q Consensus 122 ~i~gp 126 (265)
.++.+
T Consensus 83 NlEra 87 (206)
T PRK13020 83 NIERS 87 (206)
T ss_pred eeEec
Confidence 88764
No 133
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=33.48 E-value=3.2e+02 Score=24.08 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=16.3
Q ss_pred cCCCCCeEEEEeeceEeeeeeecC
Q 024591 72 LGLPIGQHISCRKEIVKMIFVGSH 95 (265)
Q Consensus 72 ~~~~pGq~v~l~~~~~r~ysis~~ 95 (265)
..|+||.+|.-. .-|+.|++++.
T Consensus 89 ~~f~~GD~V~~~-~GWq~y~i~~~ 111 (340)
T COG2130 89 PGFQPGDIVVGV-SGWQEYAISDG 111 (340)
T ss_pred CCCCCCCEEEec-ccceEEEeech
Confidence 558888877655 57778886654
No 134
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.29 E-value=3.5e+02 Score=24.06 Aligned_cols=33 Identities=3% Similarity=-0.049 Sum_probs=27.2
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 232 SDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 232 ~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+...|++.+++.....+.+++++.|+....-|.
T Consensus 178 ~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~ 210 (371)
T cd06388 178 QEKKFVIDCEIERLQNILEQIVSVGKHVKGYHY 210 (371)
T ss_pred ccEEEEEECCHHHHHHHHHHHHhcCccccceEE
Confidence 456788899999999999999999998765553
No 135
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=33.25 E-value=1.3e+02 Score=29.02 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=32.9
Q ss_pred CeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 42 NFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
....++|++.+.+++ ++++++|++... ...|+||.++-|.-
T Consensus 236 ~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~--~l~Y~~GD~lgV~P 281 (600)
T PRK10953 236 APLTASLSVNQKITGRNSEKDVRHIEIDLGDS--GLRYQPGDALGVWY 281 (600)
T ss_pred CCeEEEEEEEeecCCCCCCceEEEEEEecCCC--CCcccCCCEEEEEc
Confidence 345789999998884 589999997654 37899999999975
No 136
>PRK00811 spermidine synthase; Provisional
Probab=32.27 E-value=2.1e+02 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.4
Q ss_pred CceEEEEEeCCChHHH
Q 024591 137 VRAFGMTAGGSGITPM 152 (265)
Q Consensus 137 ~~~~vlia~GtGIap~ 152 (265)
.++++.|++|+|.++.
T Consensus 77 p~~VL~iG~G~G~~~~ 92 (283)
T PRK00811 77 PKRVLIIGGGDGGTLR 92 (283)
T ss_pred CCEEEEEecCchHHHH
Confidence 4789999999998863
No 137
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.52 E-value=3.4e+02 Score=23.32 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=26.9
Q ss_pred HHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCC
Q 024591 222 MIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEM 261 (265)
Q Consensus 222 ~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~ 261 (265)
.+.+.... +...|++++...+...+...+++.|++...
T Consensus 180 ~~~~i~~~--~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~ 217 (341)
T cd06341 180 QAQQAAAA--GADAIITVLDAAVCASVLKAVRAAGLTPKV 217 (341)
T ss_pred HHHHHHhc--CCCEEEEecChHHHHHHHHHHHHcCCCCCE
Confidence 34444432 344677888887999999999999987653
No 138
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=31.09 E-value=62 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=18.7
Q ss_pred eEEEEEeCCChHHHHHHHHHHH
Q 024591 139 AFGMTAGGSGITPMFQVTRAIL 160 (265)
Q Consensus 139 ~~vlia~GtGIap~~~~l~~l~ 160 (265)
+++.++||+|.+-+++=++++.
T Consensus 2 ~iv~lgGGtG~~~lL~GL~~~~ 23 (303)
T PRK13606 2 MITVLSGGTGTAKLLRGLKAVL 23 (303)
T ss_pred eEEEEeCccCHHHHHHHHHhcc
Confidence 5889999999999887777664
No 139
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=29.63 E-value=97 Score=27.82 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=26.0
Q ss_pred EEEEEEec-----CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 48 LVKRLQLS-----HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 48 v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
|++.+.++ .+++++.|+.+. ...|+||+++.|.-
T Consensus 2 v~~~~~lt~~~~~~~~~~~~~~~~~---~~~y~~GD~l~v~P 40 (384)
T cd06206 2 VVENRELTAPGVGPSKRHLELRLPD---GMTYRAGDYLAVLP 40 (384)
T ss_pred eeeEEEcCCCCCCccEEEEEEECCC---CCccCCCCEEEEEC
Confidence 45555555 678999998765 37899999999975
No 140
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=28.95 E-value=3.1e+02 Score=22.13 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=47.2
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEeeceEeeeeeecCCCCcEEEEEEeccCC-CCcc--cCCCCEE
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRKEIVKMIFVGSHSDGIFFNILYHATCL-LSLL--ISVNSMQ 121 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~~~~r~ysis~~~~~~~~~~~ik~~~~-~S~~--~~~G~~v 121 (265)
.++|.++++.. +..+++++.|... .....+|.+|.+. +. ..|+..- +++.|++.+-.+.- .|.. +++||.|
T Consensus 105 ~g~I~~i~~~~-~~~~~~i~~~~~~-~~~l~~kgSIavd-Gv--sLTV~~~-~~~~f~v~lipeTl~~T~l~~~k~G~~V 178 (194)
T PRK09289 105 TGEIVSIEKEG-NSVEFRFKAPAEL-AKYIVEKGSIAVD-GV--SLTVNEV-DGDRFSVNLIPHTLENTTLGEKKVGDRV 178 (194)
T ss_pred EEEEEEEEECC-CcEEEEEECChHH-hcccccCCEEEEc-cE--EEEEEEE-cCCEEEEEEeHHHHhhCccccCCCCCEE
Confidence 46778887755 4567889887541 2347899998887 44 4453322 23457776654333 4444 8999999
Q ss_pred EEe
Q 024591 122 SVA 124 (265)
Q Consensus 122 ~i~ 124 (265)
.++
T Consensus 179 NlE 181 (194)
T PRK09289 179 NLE 181 (194)
T ss_pred EEe
Confidence 875
No 141
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=28.90 E-value=3.1e+02 Score=22.12 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=47.4
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEeeceEeeeeeecCCCCcEEEEEEeccCC-CCcc--cCCCCEE
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRKEIVKMIFVGSHSDGIFFNILYHATCL-LSLL--ISVNSMQ 121 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~~~~r~ysis~~~~~~~~~~~ik~~~~-~S~~--~~~G~~v 121 (265)
..+|.++++.. +..+++++.|.. .....+|..|.+. +. ..|+..- +.+.|.+.+-.+.- .|.. +++|+.|
T Consensus 9 ~g~V~~i~~~~-~~~~~~i~~~~~--~~~l~~g~SIAvn-Gv--cLTV~~~-~~~~f~~~l~~eTl~~T~l~~l~~G~~V 81 (194)
T PRK09289 9 VGTVESIEPKG-DGLRLTIEAGKL--LSDLKLGDSIAVN-GV--CLTVTEI-DGDSFTVDVSPETLRRTNLGDLKVGDRV 81 (194)
T ss_pred EEEEEEEEEcC-CcEEEEEEcCcc--ccccccCCEEEEc-cE--EEEEEEE-cCCEEEEEEEHHHhhhCchhhccCCCEE
Confidence 35677777655 456788887754 2458899999887 33 4442222 34567777754433 4444 8899999
Q ss_pred EEeee
Q 024591 122 SVANI 126 (265)
Q Consensus 122 ~i~gp 126 (265)
.++.+
T Consensus 82 NLEra 86 (194)
T PRK09289 82 NLERA 86 (194)
T ss_pred EEeEc
Confidence 88654
No 142
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=28.49 E-value=83 Score=24.36 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=35.7
Q ss_pred cCCCCCeEEEEee---ceEeeeeeecCCCCcEEEEEEeccCCCCcc---cCCCCEEEEeeeeeeeEe
Q 024591 72 LGLPIGQHISCRK---EIVKMIFVGSHSDGIFFNILYHATCLLSLL---ISVNSMQSVANIIGRFRY 132 (265)
Q Consensus 72 ~~~~pGq~v~l~~---~~~r~ysis~~~~~~~~~~~ik~~~~~S~~---~~~G~~v~i~gp~G~~~~ 132 (265)
.....|..|.+.. .....|++..+.+.+.-.-.|.......+. .++||.+.+..|.|...+
T Consensus 84 ~~V~~Gs~V~l~~~~~~~~~~~~lvg~~e~d~~~~~IS~~SPlG~aLlGk~~Gd~v~~~~p~g~~~~ 150 (157)
T PRK00226 84 GKVKFGSTVTLKDLDTDEEETYQIVGSDEADPKQGKISIESPIARALIGKKVGDTVEVTTPGGEYEY 150 (157)
T ss_pred CEEecCCEEEEEECCCCCEEEEEEEChhhcCccCCeeccCChHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 4466888888875 356777755433333211122222221111 799999999999986544
No 143
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=28.32 E-value=1.5e+02 Score=22.26 Aligned_cols=81 Identities=6% Similarity=0.065 Sum_probs=49.3
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeecCCCCcEEEEEEeccCCCCcccCC
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGSHSDGIFFNILYHATCLLSLLISV 117 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~~~~~~~~~~~ik~~~~~S~~~~~ 117 (265)
+-+.++|...+..-.+-. +++ ++.-+...+.|++.|.+.- ...-.|.|...+.++.+.+ .|...+..++
T Consensus 9 KiHratVT~a~L~Y~GSi--tID-~~Ll~aagi~p~E~V~V~Nv~NG~Rf~TYvI~g~~GSg~I~l----NGAAAr~~~~ 81 (126)
T PRK05449 9 KIHRATVTEADLNYEGSI--TID-EDLLDAAGILENEKVQIVNVNNGARFETYVIAGERGSGVICL----NGAAARLVQV 81 (126)
T ss_pred cccceEEeccccccceeE--EEC-HHHHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCCCCEEEe----CCHHHhcCCC
Confidence 345566666554444433 332 1112347788999999876 4555666877777776665 3333333899
Q ss_pred CCEEEEeeeeeee
Q 024591 118 NSMQSVANIIGRF 130 (265)
Q Consensus 118 G~~v~i~gp~G~~ 130 (265)
||.|.|.. |+.+
T Consensus 82 GD~vII~a-y~~~ 93 (126)
T PRK05449 82 GDLVIIAA-YAQM 93 (126)
T ss_pred CCEEEEEE-CccC
Confidence 99998864 5553
No 144
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.91 E-value=1.6e+02 Score=21.50 Aligned_cols=81 Identities=4% Similarity=-0.066 Sum_probs=49.0
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeecCCCCcEEEEEEeccCCCCcccCC
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGSHSDGIFFNILYHATCLLSLLISV 117 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~~~~~~~~~~~ik~~~~~S~~~~~ 117 (265)
+.+.++|...+..-.+-. +++ ++.-+...+.|++.|.+.- ...-.|.|...+.++.+.+ .|...+..++
T Consensus 8 KiHratVT~a~L~YeGSi--tID-~~Ll~aagi~~~E~V~I~Nv~NG~Rf~TYvI~g~~gSg~I~l----NGAAAr~~~~ 80 (111)
T cd06919 8 KIHRATVTEADLNYEGSI--TID-EDLLEAAGILPYEKVLVVNVNNGARFETYVIPGERGSGVICL----NGAAARLGQP 80 (111)
T ss_pred cccceEEeccccccceeE--EEC-HHHHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCCCCEEEe----CCHHHhcCCC
Confidence 345566666554444433 332 1122347789999999876 4445666777777776655 3333333899
Q ss_pred CCEEEEeeeeeee
Q 024591 118 NSMQSVANIIGRF 130 (265)
Q Consensus 118 G~~v~i~gp~G~~ 130 (265)
||.|.|.. |+.+
T Consensus 81 GD~vII~s-y~~~ 92 (111)
T cd06919 81 GDRVIIMA-YALM 92 (111)
T ss_pred CCEEEEEE-CccC
Confidence 99998864 5554
No 145
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.38 E-value=3.7e+02 Score=22.47 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhccCCCCCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------
Q 024591 11 VQLLVGGAVAVLAIAVGAAYLFSSKKPKDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------ 84 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------ 84 (265)
.++-++.++.++.+...++|-... +.-.+..+.+.+.|..-..-...-|..|-|+.+-.
T Consensus 13 g~~~~~~~l~~~~~~G~~~y~v~~---------------sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIi 77 (290)
T KOG3090|consen 13 GPRGAGAGLKLLLIGGLGAYGVTQ---------------SLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPII 77 (290)
T ss_pred CcchHHHHHHHHHHhchhhheecc---------------eeEeecCCceEEEEeccccchhccccCCceEeeecccccee
Confidence 445566667777777777773322 22233455555666543332234577888887754
Q ss_pred --ceEeeeeeecCCCCcEE
Q 024591 85 --EIVKMIFVGSHSDGIFF 101 (265)
Q Consensus 85 --~~~r~ysis~~~~~~~~ 101 (265)
-..|||-++++.++..+
T Consensus 78 YDvRarP~~i~S~tGskDL 96 (290)
T KOG3090|consen 78 YDVRARPRLISSPTGSKDL 96 (290)
T ss_pred eeeccCcccccCCCCCcce
Confidence 45577777776655443
No 146
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=27.06 E-value=53 Score=27.64 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=19.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhh
Q 024591 9 LDVQLLVGGAVAVLAIAVGAAYL 31 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (265)
|++.+|++|++++++++.|++-.
T Consensus 7 l~G~~~~~~~~~~~~~~~~~~~~ 29 (243)
T PF05279_consen 7 LSGSSFFTWFLVLALLGVWSSVA 29 (243)
T ss_pred CCCCchHHHHHHHHHHHHHHhhH
Confidence 57789999999999988887653
No 147
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=26.99 E-value=85 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHH-HCCCCCCCEEe
Q 024591 242 PPMNKAMAAHLE-ALGYTSEMLFQ 264 (265)
Q Consensus 242 ~~~~~~~~~~l~-~~gv~~~~I~~ 264 (265)
..+.+.+.+.|. .+|+|++|||.
T Consensus 75 ~~~s~~i~~~l~~~LgIp~dRiYI 98 (113)
T PTZ00450 75 KMMTPRITAAITKECGIPAERIYV 98 (113)
T ss_pred HHHHHHHHHHHHHHcCCCcccEEE
Confidence 367788888885 68999999984
No 148
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=26.91 E-value=1.2e+02 Score=22.36 Aligned_cols=93 Identities=4% Similarity=-0.030 Sum_probs=47.6
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeecCCCCcEEEEEEeccCCCCcccCCCC
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGSHSDGIFFNILYHATCLLSLLISVNS 119 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~~~~~~~~~~~ik~~~~~S~~~~~G~ 119 (265)
+.++|...+..-.+-..+-- +.-+...+.|+..|.+.. ...-.|.|...++++.+.+ .|...+..++||
T Consensus 11 HratVT~a~L~Y~GSitID~---~Ll~aagi~p~E~V~V~Nv~nG~Rf~TYvI~g~~GSg~I~l----NGaAArl~~~GD 83 (116)
T PF02261_consen 11 HRATVTEADLNYEGSITIDE---DLLDAAGILPYEQVQVVNVNNGERFETYVIPGERGSGVICL----NGAAARLVQVGD 83 (116)
T ss_dssp EEEE--EEETTSTSCEEEEH---HHHHHCT--TTBEEEEEETTT--EEEEEEEEESTTTT-EEE----EGGGGGCS-TT-
T ss_pred cceEEeccccccceeeEECH---HHHHHcCCCcCCEEEEEECCCCcEEEEEEEEccCCCcEEEE----CCHHHhccCCCC
Confidence 45555555544444432221 112346788999999876 4555666888877887766 333444489999
Q ss_pred EEEEeeeeeeeEecC--CCCceEEEEE
Q 024591 120 MQSVANIIGRFRYQP--GQVRAFGMTA 144 (265)
Q Consensus 120 ~v~i~gp~G~~~~~~--~~~~~~vlia 144 (265)
.|.|-. |+.+.-+. ....++|++-
T Consensus 84 ~vII~s-y~~~~~~e~~~~~P~vv~vd 109 (116)
T PF02261_consen 84 RVIIMS-YAQVDEEEAKNHKPKVVFVD 109 (116)
T ss_dssp EEEEEE-EEEEEHHHHHH---EEEEEE
T ss_pred EEEEEE-cccCCHHHHhhCCCEEEEEC
Confidence 998874 66654221 1224555553
No 149
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=26.89 E-value=1.4e+02 Score=20.63 Aligned_cols=43 Identities=7% Similarity=-0.073 Sum_probs=29.3
Q ss_pred EEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-ceEeeee
Q 024591 49 VKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-EIVKMIF 91 (265)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~~~r~ys 91 (265)
++...--|+-..+.|.-...+....+++|+-|.+.+ ...|.|.
T Consensus 28 let~~qYP~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~i~~RE~~ 71 (84)
T PF11325_consen 28 LETEEQYPQKICFEFWGDKIDLLDNFQVGDEVKVSFNIEGREWN 71 (84)
T ss_pred EeCCCcCCceEEEEEEcchhhhhccCCCCCEEEEEEEeeccEec
Confidence 333444456677777765555457899999999998 5556655
No 150
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=26.88 E-value=2.4e+02 Score=20.11 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhCCCC--CcEEEEEEeeCCCccccc--HHHHHHHHHhCCCCeEEEEEecCCC
Q 024591 149 ITPMFQVTRAILENPND--KTKVHLIYANVTYEDILL--KEELDGFAAKYPDQFTIYYVLNQPP 208 (265)
Q Consensus 149 Iap~~~~l~~l~~~~~~--~~~i~L~~~~r~~~~~~~--~~~l~~l~~~~~~~~~~~~~~s~~~ 208 (265)
..|++..+++.++..+. .-.+.|.|-+.+..-.++ .+.|+++.++... +++.++....+
T Consensus 27 y~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~-V~v~Wyyd~dD 89 (99)
T PF09345_consen 27 YQPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQKGGK-VTVNWYYDEDD 89 (99)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcCCc-EEEEEEECCCC
Confidence 46888888888877332 234678888877664332 3566666555544 89988886543
No 151
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.53 E-value=66 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhccCCC
Q 024591 10 DVQLLVGGAVAVLAIAVGAAYLFSSKKP 37 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (265)
..-.=+.+++++++|++++.++|....+
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf~~~~~ 40 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLFFGGDD 40 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheecCCC
Confidence 3344567778888888888888875554
No 152
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.31 E-value=22 Score=26.46 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCeE
Q 024591 15 VGGAVAVLAIAVGAAYLFSSKKPKDPENFK 44 (265)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (265)
+.+|++..+.+++|+| .++|..+-+.|+
T Consensus 1 ~~ag~a~~~~lgYciY--FD~KRR~dP~fr 28 (121)
T PF02064_consen 1 IAAGVAAAAFLGYCIY--FDYKRRSDPDFR 28 (121)
T ss_dssp ------------------------------
T ss_pred ChHHHHHHHHHHHHhh--cccccccChHHH
Confidence 3567788888999998 666655444443
No 153
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=26.22 E-value=2.3e+02 Score=21.15 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=28.3
Q ss_pred ecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeecCCCCcEEEEEEec
Q 024591 54 LSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGSHSDGIFFNILYHA 107 (265)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~~~~~~~~~~~ik~ 107 (265)
+.....++|+.-- .+-++||||.+.- ...+||+.+... +.+-|.|..
T Consensus 14 l~~~~~~~R~AK~-----TP~K~G~FVt~Wkr~~~g~~~Pf~~~d~~--d~liI~v~d 64 (123)
T PF08877_consen 14 LNGKTIRFRLAKK-----TPKKPGQFVTFWKRDENGKNQPFDEEDSF--DFLIINVID 64 (123)
T ss_pred ECCcEEEEEeccc-----CCCcccEEEEEEEECCCCCccCCccccCC--CEEEEEEEe
Confidence 3444455555433 4478999999987 677888855332 335554443
No 154
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.79 E-value=3.5e+02 Score=21.74 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCC
Q 024591 152 MFQVTRAILENPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP 230 (265)
Q Consensus 152 ~~~~l~~l~~~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~ 230 (265)
...+.+.+.+......++-+++..... ......+-+.+..++..+ +++....... +....+ .+.+.+++..
T Consensus 107 ~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~-~~~~~~~~~~---~~~~~~---~~~~~~~~~~- 178 (267)
T cd01536 107 GRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPD-IEIVAVQDGN---WDREKA---LQAMEDLLQA- 178 (267)
T ss_pred HHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCC-cEEEEEecCC---CcHHHH---HHHHHHHHHh-
Confidence 344555555541124788887765431 111122334444344322 4433222111 110111 1334444432
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCE
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEALGYTSEML 262 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I 262 (265)
..+..+++|++..+...+...|++.|+. +++
T Consensus 179 ~~~~~~i~~~~d~~a~~~~~~l~~~g~~-~~i 209 (267)
T cd01536 179 NPDIDAIFAANDSMALGAVAALKAAGRK-GDV 209 (267)
T ss_pred CCCccEEEEecCCchHHHHHHHHhcCCC-CCc
Confidence 2345678888888999999999999986 444
No 155
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=25.63 E-value=97 Score=28.96 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=35.2
Q ss_pred CCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 40 PENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
|....++++++.+.+++ |++.+.|+.+.. ...|+||..+.|.-
T Consensus 193 ~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s--~~~~epGDvl~l~P 240 (574)
T KOG1159|consen 193 PQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDS--YEEFEPGDVLSLLP 240 (574)
T ss_pred cccccccchhcceeecCcchhheeeEEEEecCCc--cccccCCCEEEEec
Confidence 55556688888888885 699999999985 47899999998875
No 156
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.44 E-value=63 Score=23.14 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=21.1
Q ss_pred CCcEEEEeCCHH-HHHHHHHHHHHCCCC
Q 024591 232 SDIQVLRCGPPP-MNKAMAAHLEALGYT 258 (265)
Q Consensus 232 ~~~~v~vCGp~~-~~~~~~~~l~~~gv~ 258 (265)
.+.++.++||+. ++..+.+.|++.|++
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~ 88 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIP 88 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-C
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCc
Confidence 466788999976 788889999988875
No 157
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=24.84 E-value=1.2e+02 Score=26.91 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=25.7
Q ss_pred EEEEEEec-----CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 48 LVKRLQLS-----HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 48 v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
|++.+.++ .++++++|+.+.. ...|+||.++.|..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~--~~~y~~GD~l~i~p 41 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGS--GLSYEPGDALGVYP 41 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCC--CCcccCCCEEEEEc
Confidence 34445555 3589999998763 37899999999975
No 158
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=24.50 E-value=2.9e+02 Score=23.36 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=22.3
Q ss_pred EEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCc
Q 024591 141 GMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYE 179 (265)
Q Consensus 141 vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~ 179 (265)
|+|.||||- -..+++.+.+.+ ..++.++++..
T Consensus 3 ILvlGGT~e--gr~la~~L~~~g-----~~v~~s~~t~~ 34 (256)
T TIGR00715 3 VLLMGGTVD--SRAIAKGLIAQG-----IEILVTVTTSE 34 (256)
T ss_pred EEEEechHH--HHHHHHHHHhCC-----CeEEEEEccCC
Confidence 789999997 467777777552 34566777653
No 159
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.32 E-value=99 Score=25.12 Aligned_cols=40 Identities=5% Similarity=0.041 Sum_probs=32.1
Q ss_pred HhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 223 IQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 223 l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
+...+.. ....++|+-|+.+=-..++.+...++||++.|.
T Consensus 127 ~~~l~a~-~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 127 VQRLLAD-NAPLDLYLVGSQGDDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred HHHHhcC-CCceeEEEecCCCCHHHHHHHHHHcCCCHHHee
Confidence 4444433 567899999998888999999999999988763
No 160
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=24.31 E-value=43 Score=22.39 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=32.3
Q ss_pred cCCCCCeEEEEee---ceEeeeeeec----CCCCcEEEEEEeccCCCCcc---cCCCCEEEEeeeeeeeEe
Q 024591 72 LGLPIGQHISCRK---EIVKMIFVGS----HSDGIFFNILYHATCLLSLL---ISVNSMQSVANIIGRFRY 132 (265)
Q Consensus 72 ~~~~pGq~v~l~~---~~~r~ysis~----~~~~~~~~~~ik~~~~~S~~---~~~G~~v~i~gp~G~~~~ 132 (265)
....+|..|.++. ...+.|++-. +++.+ .|......... .++||++.+..|.|...+
T Consensus 4 ~~V~~Gs~V~l~~~~~~~~~~~~lv~~~~~~~~~~----~IS~~SPLG~ALlG~~~Gd~v~~~~~~g~~~~ 70 (77)
T PF01272_consen 4 DVVTIGSTVTLKDLDDGEEETYTLVGPDEADPDNG----KISIDSPLGKALLGKKVGDEVEVELPGGERKY 70 (77)
T ss_dssp SB-STTEEEEEEETTTTEEEEEEEE-GGG-BSTST----EEETTSHHHHHHTT-BTT-EEEEEETTBEEEE
T ss_pred CEEEeCCEEEEEECCCCCEEEEEEEeEhHhCCcee----EEEecCHHHHHhcCCCCCCEEEEEeCCceEEE
Confidence 3467899999876 6667777322 22333 22222121111 799999999999986544
No 161
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=24.17 E-value=2.9e+02 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=12.8
Q ss_pred EECCCCCcccCCCCCeEEEEee
Q 024591 63 FELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 63 ~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
|..+++.....+++|+.|.+.+
T Consensus 78 F~v~~~~~l~~lk~G~~V~F~~ 99 (115)
T PRK09838 78 FTITPQTKMSEIKTGDKVAFNF 99 (115)
T ss_pred ccCCChhhhccCCCCCEEEEEE
Confidence 3333333345577888877765
No 162
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=24.11 E-value=1.9e+02 Score=24.89 Aligned_cols=98 Identities=15% Similarity=0.305 Sum_probs=47.8
Q ss_pred ceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCC-------------------CcccccHHHHHHHHHhCCCCe
Q 024591 138 RAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVT-------------------YEDILLKEELDGFAAKYPDQF 198 (265)
Q Consensus 138 ~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~-------------------~~~~~~~~~l~~l~~~~~~~~ 198 (265)
++++.|+||-|-+. +++++-. +..+++++=.... .-.+...|-.+.+.+ .+.++
T Consensus 78 k~VLiiGgGdG~tl-----Revlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTL-----REVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-CEEKF 150 (282)
T ss_pred CeEEEECCCccHHH-----HHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-CCCcC
Confidence 69999999999763 6665542 2344443322211 113344444444443 33346
Q ss_pred EEEEEecCCCCCCCCcccCCCHHH---HhhhCCCCCCCcEEEEeCCHHHHH
Q 024591 199 TIYYVLNQPPESWNGGVGFVSKEM---IQTHCPAPASDIQVLRCGPPPMNK 246 (265)
Q Consensus 199 ~~~~~~s~~~~~~~~~~g~~~~~~---l~~~~~~~~~~~~v~vCGp~~~~~ 246 (265)
++..+.+.+.. ....+-.+.+. ..+.+. .++..+.-||++-+-.
T Consensus 151 DvIi~D~tdp~--gp~~~Lft~eFy~~~~~~L~--~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 151 DVIIVDSTDPV--GPAEALFTEEFYEGCRRALK--EDGIFVAQAGSPFLQD 197 (282)
T ss_pred CEEEEcCCCCC--CcccccCCHHHHHHHHHhcC--CCcEEEEecCCcccch
Confidence 66555443321 11122233333 334444 2466666788865553
No 163
>PLN02741 riboflavin synthase
Probab=23.53 E-value=4e+02 Score=21.55 Aligned_cols=75 Identities=8% Similarity=-0.005 Sum_probs=45.0
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEeeceEeeeeeec-CCCCcEEEEEEeccCC-CCcc--cCCCCE
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRKEIVKMIFVGS-HSDGIFFNILYHATCL-LSLL--ISVNSM 120 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~~~~r~ysis~-~~~~~~~~~~ik~~~~-~S~~--~~~G~~ 120 (265)
.++|+++++.. +...++|+.|..-..+ ..+.-+|.+. +. +.|++. .++.+.|++.+-.+.- .|.. +++||.
T Consensus 106 ~~~i~~~~~~~-~~~~~~i~~p~~~~~y-i~~KGsIavd-Gv--SLTV~~v~~~~~~f~v~lIP~T~~~T~l~~~k~Gd~ 180 (194)
T PLN02741 106 TGTIVEQEPEG-DSLWVKVKADPELLKY-IVPKGFIAVD-GT--SLTVVDVDDEEGCFNFMLVPYTQQKVVIPLKKVGDK 180 (194)
T ss_pred EEEEEEEEECC-CcEEEEEEECHHHHcc-cccCcEEEEe-eE--EEEEEEeecCCCEEEEEEcHHHHhhcccccCCCCCE
Confidence 46777777555 5666788888752222 3444556665 44 445332 2235667776654433 5555 899999
Q ss_pred EEEe
Q 024591 121 QSVA 124 (265)
Q Consensus 121 v~i~ 124 (265)
|.++
T Consensus 181 VNiE 184 (194)
T PLN02741 181 VNLE 184 (194)
T ss_pred EEEe
Confidence 9875
No 164
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.37 E-value=1.7e+02 Score=24.98 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=47.2
Q ss_pred EEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHH
Q 024591 142 MTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKE 221 (265)
Q Consensus 142 lia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~ 221 (265)
++-|+..|......++.+.+++ .++.++--+-+...-.+.+.|..+.-. . .....+++ .|....+
T Consensus 19 l~~G~~~ipga~e~l~~L~~~g---~~~iflTNn~~~s~~~~~~~L~~~~~~--~-~~~~~i~T---------S~~at~~ 83 (269)
T COG0647 19 LYRGNEAIPGAAEALKRLKAAG---KPVIFLTNNSTRSREVVAARLSSLGGV--D-VTPDDIVT---------SGDATAD 83 (269)
T ss_pred eEeCCccCchHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHhhcCC--C-CCHHHeec---------HHHHHHH
Confidence 5688889999999999888774 344333333333333344555543211 0 12222222 2233334
Q ss_pred HHhhhCCCCCCCcEEEEeCCHHHHHHHH
Q 024591 222 MIQTHCPAPASDIQVLRCGPPPMNKAMA 249 (265)
Q Consensus 222 ~l~~~~~~~~~~~~v~vCGp~~~~~~~~ 249 (265)
.+.+.. +...||+-|.+++.+.++
T Consensus 84 ~l~~~~----~~~kv~viG~~~l~~~l~ 107 (269)
T COG0647 84 YLAKQK----PGKKVYVIGEEGLKEELE 107 (269)
T ss_pred HHHhhC----CCCEEEEECCcchHHHHH
Confidence 444432 346788888777665543
No 165
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=23.35 E-value=2e+02 Score=21.54 Aligned_cols=81 Identities=6% Similarity=0.044 Sum_probs=48.9
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----ceEeeeeeecCCCCcEEEEEEeccCCCCcccCC
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----EIVKMIFVGSHSDGIFFNILYHATCLLSLLISV 117 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----~~~r~ysis~~~~~~~~~~~ik~~~~~S~~~~~ 117 (265)
+-+.++|...+..-.+-. +++ ++.-+...+.|++.|.+.- ...-.|.|...+.++.+.+ .|...+..++
T Consensus 9 KIHratVT~a~L~Y~GSI--tID-~~Lm~aagi~p~E~V~V~Nv~NG~Rf~TYvI~G~~GSg~I~l----NGAAArl~~~ 81 (126)
T TIGR00223 9 KLHRATVTHANLNYEGSI--TID-EDLLDAAGILENEKVDIVNVNNGKRFSTYAIAGKRGSRIICV----NGAAARCVSV 81 (126)
T ss_pred hhcceEEeccccccceeE--EEC-HHHHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCCCCEEEe----CCHHHhcCCC
Confidence 345566666554444433 332 1112347788999998876 4445666777777776655 3333333899
Q ss_pred CCEEEEeeeeeee
Q 024591 118 NSMQSVANIIGRF 130 (265)
Q Consensus 118 G~~v~i~gp~G~~ 130 (265)
||.|.|-. |+.+
T Consensus 82 GD~VII~s-y~~~ 93 (126)
T TIGR00223 82 GDIVIIAS-YVTM 93 (126)
T ss_pred CCEEEEEE-CCcC
Confidence 99998864 5543
No 166
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=23.09 E-value=1.8e+02 Score=26.68 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=33.3
Q ss_pred eEEEEEeCCChHHHHHHHHHHHhCCC--CCcEEEEEEeeCCCccc-ccHHHHHHHHHhCCCCeEEEEEec
Q 024591 139 AFGMTAGGSGITPMFQVTRAILENPN--DKTKVHLIYANVTYEDI-LLKEELDGFAAKYPDQFTIYYVLN 205 (265)
Q Consensus 139 ~~vlia~GtGIap~~~~l~~l~~~~~--~~~~i~L~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~~~s 205 (265)
++++|+|||..+| .+++.++.... ....+.|+=... ++.+ ......+.+.++....+++....+
T Consensus 2 KI~iIGaGS~~tp--~li~~l~~~~~~l~~~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d 68 (419)
T cd05296 2 KLTIIGGGSSYTP--ELIEGLIRRYEELPVTELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTD 68 (419)
T ss_pred EEEEECCchHhHH--HHHHHHHhccccCCCCEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 5789999997665 68888877422 234444433221 2222 123334444444432256554443
No 167
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=84 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred CceEEEEEeCCChHHHHHHHHHHH
Q 024591 137 VRAFGMTAGGSGITPMFQVTRAIL 160 (265)
Q Consensus 137 ~~~~vlia~GtGIap~~~~l~~l~ 160 (265)
..+++.++||||++-+++-++...
T Consensus 7 ~~kvvvlgGGtGl~~lL~gLk~~~ 30 (323)
T COG0391 7 KPKVVVLGGGTGLPKLLSGLKRLL 30 (323)
T ss_pred CceEEEEcCCCCHHHHHHHHHhhc
Confidence 358999999999999998888776
No 168
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=22.98 E-value=1.6e+02 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.2
Q ss_pred eEEEEEeCCC---hHHHHHHHHHHHh
Q 024591 139 AFGMTAGGSG---ITPMFQVTRAILE 161 (265)
Q Consensus 139 ~~vlia~GtG---Iap~~~~l~~l~~ 161 (265)
++++.++|+| ++|.+++++++.+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~ 26 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN 26 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC
Confidence 4778899999 8888899998775
No 169
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=22.79 E-value=1.8e+02 Score=19.88 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
.+...++.|+...-...+...|.+.|+. +++
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~--~v~ 83 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAG--EAY 83 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCc--cEE
Confidence 4567888899877777888888888876 454
No 170
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.72 E-value=3.6e+02 Score=24.04 Aligned_cols=96 Identities=6% Similarity=-0.075 Sum_probs=58.2
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEe---------e--------ceEeeeeeecCCCCcEE
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCR---------K--------EIVKMIFVGSHSDGIFF 101 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~---------~--------~~~r~ysis~~~~~~~~ 101 (265)
..-...+++|.++++++-+-+...=. - .-+++|+-..+- . ..+|||.++. |.+
T Consensus 163 ~~l~L~~a~Vt~V~~vG~GdRVCVDt-c-----sll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNA----GaV 232 (344)
T PRK02290 163 EKLELVPATVTRVEPVGMGDRVCVDT-C-----SLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNA----GAV 232 (344)
T ss_pred CcceeEEEEEEEEEEcCCccEEEEEc-c-----ccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEec----Ccc
Confidence 46677899999999998765433221 1 224444433221 1 2345555544 345
Q ss_pred EEEEeccCCCCcc---cCCCCEEEEeeeeeeeEe------cCCCCceEEEEEe
Q 024591 102 NILYHATCLLSLL---ISVNSMQSVANIIGRFRY------QPGQVRAFGMTAG 145 (265)
Q Consensus 102 ~~~ik~~~~~S~~---~~~G~~v~i~gp~G~~~~------~~~~~~~~vlia~ 145 (265)
.--+..-++-|+| |+.|++|.+-...|+..- .. ..+++++|-+
T Consensus 233 haYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKI-E~RPL~lIeA 284 (344)
T PRK02290 233 HAYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKI-EKRPLLLIEA 284 (344)
T ss_pred eeEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEE-eeccEEEEEE
Confidence 5556666778888 999999999887776321 11 1267777765
No 171
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=22.10 E-value=4.9e+02 Score=22.09 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=58.8
Q ss_pred EEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEE--EEecCCCCCCCCcccCC
Q 024591 141 GMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIY--YVLNQPPESWNGGVGFV 218 (265)
Q Consensus 141 vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~--~~~s~~~~~~~~~~g~~ 218 (265)
++-...+-..-..++++.+... ....++.+++.. +...-...+.+.+..++. + +++. ..+..... ..
T Consensus 111 ~f~~~~~~~~~~~~~~~~~~~~-~g~~~v~iv~~~-~~~g~~~~~~~~~~~~~~-G-~~vv~~~~~~~~~~-------d~ 179 (343)
T PF13458_consen 111 VFRLSPSDSQQAAALAEYLAKK-LGAKKVAIVYPD-DPYGRSLAEAFRKALEAA-G-GKVVGEIRYPPGDT-------DF 179 (343)
T ss_dssp EEESS--HHHHHHHHHHHHHHT-TTTSEEEEEEES-SHHHHHHHHHHHHHHHHT-T-CEEEEEEEE-TTSS-------HH
T ss_pred EEEEeccccHHHHHHHHHHHHH-cCCcEEEEEecC-chhhhHHHHHHHHHHhhc-C-ceeccceecccccc-------cc
Confidence 3444444445566777776654 235799999866 333333345555555554 2 4442 12221111 11
Q ss_pred CHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 219 SKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 219 ~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
. ..+++.... ....|++|+.+..+..+...+.+.|+....+.
T Consensus 180 ~-~~~~~l~~~--~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (343)
T PF13458_consen 180 S-ALVQQLKSA--GPDVVVLAGDPADAAAFLRQLRQLGLKPPRIP 221 (343)
T ss_dssp H-HHHHHHHHT--TTSEEEEESTHHHHHHHHHHHHHTTGCSCTEE
T ss_pred h-HHHHHHhhc--CCCEEEEeccchhHHHHHHHHHhhccccccce
Confidence 1 223333221 23348888999988888888899988876553
No 172
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=21.98 E-value=2.1e+02 Score=20.10 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHCC
Q 024591 242 PPMNKAMAAHLEALG 256 (265)
Q Consensus 242 ~~~~~~~~~~l~~~g 256 (265)
+.+.+.+++.+.++|
T Consensus 21 ~~l~~~l~~~l~~~~ 35 (97)
T cd03062 21 PPLAAELRAELPEHG 35 (97)
T ss_pred HHHHHHHHHHHHHhC
Confidence 567888888887776
No 173
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=21.73 E-value=98 Score=23.97 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.0
Q ss_pred ecCCCCceEEEEEeCCChHHH
Q 024591 132 YQPGQVRAFGMTAGGSGITPM 152 (265)
Q Consensus 132 ~~~~~~~~~vlia~GtGIap~ 152 (265)
+.+...+.+++||-|+++.|=
T Consensus 47 I~p~~~~d~viVA~gi~ls~e 67 (161)
T COG5440 47 IQPPRGSDMVIVAIGIALSQE 67 (161)
T ss_pred EecCCCCcEEEEEEeeccCHH
Confidence 345566899999999999984
No 174
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=21.69 E-value=1.4e+02 Score=18.96 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=18.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 235 QVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 235 ~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
.+|-|+.+--...+++.|++.||+.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~ 26 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPA 26 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--E
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcE
Confidence 4788999999999999999999874
No 175
>PRK12361 hypothetical protein; Provisional
Probab=21.68 E-value=6.8e+02 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.1
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHCC
Q 024591 233 DIQVLRCGPPPMNKAMAAHLEALG 256 (265)
Q Consensus 233 ~~~v~vCGp~~~~~~~~~~l~~~g 256 (265)
...|++||..+.+.++.+.|...+
T Consensus 298 ~d~Viv~GGDGTl~ev~~~l~~~~ 321 (547)
T PRK12361 298 ADIVIACGGDGTVTEVASELVNTD 321 (547)
T ss_pred CCEEEEECCCcHHHHHHHHHhcCC
Confidence 457899999999999998887554
No 176
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=21.30 E-value=1e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=17.1
Q ss_pred EEEeC-CChHHHHHHHHHHHhCCCCCcEEEEE
Q 024591 142 MTAGG-SGITPMFQVTRAILENPNDKTKVHLI 172 (265)
Q Consensus 142 lia~G-tGIap~~~~l~~l~~~~~~~~~i~L~ 172 (265)
+|++| +|++-+.++++.. ......+|++|
T Consensus 2 IIG~G~~G~~~l~~L~~~~--~~~~~~~I~vf 31 (156)
T PF13454_consen 2 IIGGGPSGLAVLERLLRQA--DPKPPLEITVF 31 (156)
T ss_pred EECcCHHHHHHHHHHHHhc--CCCCCCEEEEE
Confidence 56677 5777777777765 11233455554
No 177
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=21.23 E-value=2.2e+02 Score=23.20 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=11.1
Q ss_pred hhhhccCCCCCCCCeEEEEE
Q 024591 29 AYLFSSKKPKDPENFKEFKL 48 (265)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~v 48 (265)
-|.+.+.+....+.+...++
T Consensus 27 T~AyFSD~ets~Ntf~aGtl 46 (199)
T PF12389_consen 27 TFAYFSDTETSNNTFAAGTL 46 (199)
T ss_pred cEEEEecccccCceeeeeEE
Confidence 34444555555677766654
No 178
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=21.22 E-value=2e+02 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=21.8
Q ss_pred eEEEEEeCCC--hHHHHHHHHHHHhCC
Q 024591 139 AFGMTAGGSG--ITPMFQVTRAILENP 163 (265)
Q Consensus 139 ~~vlia~GtG--Iap~~~~l~~l~~~~ 163 (265)
.+++.||||| +.|.+++++++.+++
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g 28 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRG 28 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhC
Confidence 5788999986 999999999998874
No 179
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=21.11 E-value=1.4e+02 Score=26.75 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 56 HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
.++++++|+.+.. ...|+||+++.|.-
T Consensus 15 ~~~~hl~l~~~~~--~~~y~~GD~l~v~p 41 (382)
T cd06207 15 RSTRHIEFDLGGS--GLSYETGDNLGIYP 41 (382)
T ss_pred ceEEEEEEecCCC--CCccCCCCEEEEEc
Confidence 4599999997643 37899999999975
No 180
>PLN02741 riboflavin synthase
Probab=20.99 E-value=4.5e+02 Score=21.23 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=45.5
Q ss_pred EEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEeeceEeeeeeecCCCCcEEEEEEeccCC-CCcc--cCCCCEE
Q 024591 45 EFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRKEIVKMIFVGSHSDGIFFNILYHATCL-LSLL--ISVNSMQ 121 (265)
Q Consensus 45 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~~~~r~ysis~~~~~~~~~~~ik~~~~-~S~~--~~~G~~v 121 (265)
..+|.++++..++..+++++ +.. ......+|..|.+. +. ..|+..- +.+.|++.+-...- .|.. +++|+.|
T Consensus 9 ~G~I~~i~~~~~~~~~l~i~-~~~-~~~~l~~G~SIAvn-Gv--CLTV~~~-~~~~f~vdvipETl~~T~L~~l~~G~~V 82 (194)
T PLN02741 9 MGEVKSLGVTDDGGFDLKIE-AST-VLDGVKLGDSIAVN-GT--CLTVTEF-DGDEFTVGLAPETLRKTSLGELKTGSLV 82 (194)
T ss_pred EEEEEEEEecCCCcEEEEEE-cch-hhcccccCCEEEEC-cE--EEEEEEE-CCCEEEEEEEHHHhhhCccccCCCCCEE
Confidence 35677777634566778888 332 13467899998887 33 3442221 23457776654322 4443 7888888
Q ss_pred EEeee
Q 024591 122 SVANI 126 (265)
Q Consensus 122 ~i~gp 126 (265)
.++-+
T Consensus 83 NLEra 87 (194)
T PLN02741 83 NLERA 87 (194)
T ss_pred eeccC
Confidence 87553
No 181
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.88 E-value=2.1e+02 Score=20.74 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=21.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCC
Q 024591 232 SDIQVLRCGPPPMNKAMAAHLEALGY 257 (265)
Q Consensus 232 ~~~~v~vCGp~~~~~~~~~~l~~~gv 257 (265)
+-..+++|.|..........+.+.|+
T Consensus 66 ~~Dvvf~a~~~~~~~~~~~~~~~~g~ 91 (121)
T PF01118_consen 66 DVDVVFLALPHGASKELAPKLLKAGI 91 (121)
T ss_dssp TESEEEE-SCHHHHHHHHHHHHHTTS
T ss_pred cCCEEEecCchhHHHHHHHHHhhCCc
Confidence 35679999999999999999988875
No 182
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=20.86 E-value=98 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=24.5
Q ss_pred CcEEEEeCC-----HHHHHHHHHHHHHCCCCCCCEE
Q 024591 233 DIQVLRCGP-----PPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 233 ~~~v~vCGp-----~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
...++++|. .+-...++++|.++|||+++|+
T Consensus 82 ~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii 117 (239)
T PRK10834 82 VNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIV 117 (239)
T ss_pred CCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEE
Confidence 456778875 3456679999999999999986
No 183
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=20.28 E-value=1e+02 Score=23.22 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=22.3
Q ss_pred CcEEEEeCCHH------HHHHHHHHHHHCCCCCCCEE
Q 024591 233 DIQVLRCGPPP------MNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 233 ~~~v~vCGp~~------~~~~~~~~l~~~gv~~~~I~ 263 (265)
...+++||... -...+++.+.+.|+|+++|+
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~ 71 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAIL 71 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHee
Confidence 55677777743 55677788888888887775
No 184
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.28 E-value=6.1e+02 Score=22.43 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=26.2
Q ss_pred CCeEEEEEEEEEEecC---C--EEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 41 ENFKEFKLVKRLQLSH---N--VAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~~---~--~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
..-.+++|.++....+ + .+.+++..+.+. ..++||+++.+.+
T Consensus 252 ~~~~~g~V~~I~~~~~~~~~~~~~~v~~~~~~~~--~~l~~Gm~v~v~i 298 (370)
T PRK11578 252 LTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPN--GLLRLDMTAQVHI 298 (370)
T ss_pred CCeEEEEEEEEccCceecccEEEEEEEEEecCCc--CcCCCCCEEEEEE
Confidence 3345677777754332 2 234566655542 5589999999987
No 185
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=20.04 E-value=3.4e+02 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=14.1
Q ss_pred CceEEEEEeCCChHHHHHHHHHHHhC
Q 024591 137 VRAFGMTAGGSGITPMFQVTRAILEN 162 (265)
Q Consensus 137 ~~~~vlia~GtGIap~~~~l~~l~~~ 162 (265)
.++.+++||=.||+ +++.++|+++
T Consensus 5 GKna~vtggagGIG--l~~sk~Ll~k 28 (261)
T KOG4169|consen 5 GKNALVTGGAGGIG--LATSKALLEK 28 (261)
T ss_pred CceEEEecCCchhh--HHHHHHHHHc
Confidence 35666776666666 4455555544
Done!