Query 024591
Match_columns 265
No_of_seqs 125 out of 1522
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 1.3E-43 4.6E-48 297.4 27.4 227 38-265 6-243 (243)
2 1umk_A B5R, NADH-cytochrome B5 100.0 6.3E-43 2.2E-47 298.6 27.3 227 39-265 12-275 (275)
3 1qfj_A Protein (flavin reducta 100.0 4.2E-40 1.4E-44 274.3 23.2 214 44-264 3-226 (232)
4 2cnd_A NADH-dependent nitrate 100.0 1E-39 3.4E-44 278.0 25.0 226 39-264 8-268 (270)
5 1tvc_A Methane monooxygenase c 100.0 4.6E-40 1.6E-44 277.2 21.7 223 39-264 6-241 (250)
6 4eh1_A Flavohemoprotein; struc 100.0 1.5E-39 5.1E-44 272.7 24.0 214 41-264 1-232 (243)
7 1cqx_A Flavohemoprotein; globi 100.0 3.7E-38 1.3E-42 282.9 28.1 225 35-264 146-393 (403)
8 1gvh_A Flavohemoprotein; oxido 100.0 2.5E-38 8.5E-43 283.4 26.9 226 35-264 144-387 (396)
9 1krh_A Benzoate 1,2-dioxygenas 100.0 2.8E-38 9.7E-43 277.4 22.6 220 39-264 104-332 (338)
10 4g1v_A Flavohemoglobin; three 100.0 2.1E-37 7.1E-42 277.7 28.2 213 40-264 146-387 (399)
11 1fdr_A Flavodoxin reductase; f 100.0 6.8E-38 2.3E-42 263.5 23.4 217 42-264 3-238 (248)
12 2r6h_A NADH:ubiquinone oxidore 100.0 1.5E-37 5E-42 267.2 25.6 222 40-264 6-286 (290)
13 2bgi_A Ferredoxin-NADP(H) redu 100.0 2E-36 7E-41 257.9 22.9 213 44-263 17-256 (272)
14 4fk8_A Ferredoxin--NADP reduct 100.0 8.8E-38 3E-42 266.2 13.7 217 40-263 16-258 (271)
15 2qdx_A Ferredoxin reductase; o 100.0 8.4E-37 2.9E-41 258.2 19.6 216 41-264 1-250 (257)
16 3jqq_A Ferredoxin NADP reducta 100.0 1.9E-36 6.5E-41 263.3 19.1 223 33-264 8-313 (316)
17 3vo2_A Putative uncharacterize 100.0 1.7E-35 5.7E-40 256.8 22.1 211 39-254 29-283 (310)
18 3lo8_A Ferredoxin--NADP reduct 100.0 1E-35 3.5E-40 258.3 19.0 213 39-255 24-285 (311)
19 2pia_A Phthalate dioxygenase r 100.0 3.2E-34 1.1E-38 250.0 22.2 209 39-264 4-222 (321)
20 1fnb_A Ferredoxin-NADP+ reduct 100.0 7.2E-34 2.5E-38 247.0 23.0 211 39-255 33-288 (314)
21 2b5o_A FNR, ferredoxin--NADP r 100.0 4.4E-34 1.5E-38 255.9 20.6 213 42-259 121-380 (402)
22 2bmw_A Ferredoxin--NADP reduct 100.0 1.7E-33 5.8E-38 243.5 20.6 217 39-259 17-286 (304)
23 1ep3_B Dihydroorotate dehydrog 100.0 9.9E-34 3.4E-38 240.1 18.4 197 44-258 6-215 (262)
24 2rc5_A Ferredoxin-NADP reducta 100.0 3.7E-33 1.3E-37 242.5 19.2 217 39-263 17-295 (314)
25 2gpj_A Siderophore-interacting 100.0 1.5E-31 5.2E-36 225.3 18.1 206 40-264 5-223 (252)
26 1ddg_A Sulfite reductase (NADP 99.9 1.5E-28 5.1E-33 217.8 4.8 177 73-254 145-343 (374)
27 1f20_A Nitric-oxide synthase; 99.9 2.3E-25 8E-30 201.0 9.7 168 86-256 209-404 (435)
28 1tll_A Nitric-oxide synthase, 99.9 6.1E-25 2.1E-29 208.2 10.3 167 86-255 430-624 (688)
29 4dql_A Bifunctional P-450/NADP 99.9 1E-24 3.5E-29 194.2 10.4 176 74-254 157-360 (393)
30 2qtl_A MSR;, methionine syntha 99.9 2E-24 6.7E-29 199.1 9.8 167 86-254 290-507 (539)
31 3lrx_A Putative hydrogenase; a 99.9 1.4E-25 4.7E-30 175.7 1.8 133 115-258 1-138 (158)
32 3a1f_A Cytochrome B-245 heavy 99.9 4.7E-24 1.6E-28 170.9 8.8 138 121-258 1-172 (186)
33 3qfs_A CPR, P450R, NADPH--cyto 99.9 5.3E-23 1.8E-27 185.8 12.4 162 85-254 232-426 (458)
34 3lyu_A Putative hydrogenase; t 99.9 3E-24 1E-28 165.1 3.3 128 121-259 3-134 (142)
35 3qe2_A CPR, P450R, NADPH--cyto 99.9 1E-22 3.5E-27 190.9 9.3 165 86-254 393-586 (618)
36 2bpo_A CPR, P450R, NADPH-cytoc 99.9 1.6E-23 5.4E-28 198.4 2.8 174 75-254 415-651 (682)
37 3s2u_A UDP-N-acetylglucosamine 76.4 2.8 9.6E-05 35.9 4.7 33 138-173 3-37 (365)
38 4dql_A Bifunctional P-450/NADP 59.5 21 0.00071 31.0 6.6 39 43-84 6-49 (393)
39 1ddg_A Sulfite reductase (NADP 55.2 36 0.0012 29.2 7.4 43 40-84 8-55 (374)
40 2qtl_A MSR;, methionine syntha 53.2 33 0.0011 31.2 7.1 44 39-84 110-158 (539)
41 3qfs_A CPR, P450R, NADPH--cyto 50.9 50 0.0017 29.3 7.8 42 41-84 60-105 (458)
42 3ne5_B Cation efflux system pr 46.5 21 0.00071 31.1 4.5 40 43-84 275-317 (413)
43 3qe2_A CPR, P450R, NADPH--cyto 36.1 1E+02 0.0035 28.4 7.7 40 43-84 222-265 (618)
44 4he6_A Peptidase family U32; u 35.0 43 0.0015 22.1 3.7 28 96-129 17-44 (89)
45 2kix_A BM2 protein; channel, t 34.7 38 0.0013 17.4 2.5 27 3-29 2-28 (33)
46 1f20_A Nitric-oxide synthase; 34.4 95 0.0033 27.1 6.9 41 43-84 30-75 (435)
47 3fpp_A Macrolide-specific effl 34.4 20 0.00068 30.0 2.4 41 42-84 223-268 (341)
48 3lnn_A Membrane fusion protein 32.6 1E+02 0.0034 25.8 6.6 39 44-84 239-280 (359)
49 3e0e_A Replication protein A; 31.8 78 0.0027 21.2 4.7 12 115-126 64-75 (97)
50 3zq4_A Ribonuclease J 1, RNAse 29.2 1.4E+02 0.0049 27.0 7.3 118 138-263 291-414 (555)
51 2q7x_A UPF0052 protein SP_1565 28.8 39 0.0013 28.6 3.2 22 138-159 5-26 (326)
52 2k5d_A Uncharacterized protein 28.5 1.4E+02 0.0048 21.0 5.5 44 85-129 41-84 (116)
53 2pn0_A Prokaryotic transcripti 28.1 43 0.0015 24.4 3.0 61 72-132 55-122 (141)
54 3fiq_A OBP1, RCG36470, odorant 27.9 39 0.0013 24.8 2.8 25 241-265 125-149 (157)
55 2k50_A Replication factor A re 27.1 1.2E+02 0.0041 20.7 5.2 13 115-127 71-83 (115)
56 2p0y_A Hypothetical protein LP 26.1 38 0.0013 28.8 2.7 23 137-159 10-32 (341)
57 1tll_A Nitric-oxide synthase, 25.9 1.6E+02 0.0055 27.5 7.2 42 42-84 250-296 (688)
58 4eyg_A Twin-arginine transloca 25.2 2.6E+02 0.0089 22.7 7.9 30 233-262 195-224 (368)
59 3hix_A ALR3790 protein; rhodan 22.8 1.7E+02 0.0057 19.4 5.2 32 231-264 51-82 (106)
60 3lop_A Substrate binding perip 22.5 3E+02 0.01 22.4 7.8 27 233-259 197-223 (364)
61 2fhd_A RAD9 homolog, DNA repai 22.5 1.6E+02 0.0053 21.7 5.0 46 39-84 19-74 (153)
62 2f23_A Anti-cleavage anti-GREA 22.0 38 0.0013 25.1 1.7 59 72-132 81-149 (156)
63 3td9_A Branched chain amino ac 21.4 3.3E+02 0.011 22.1 10.0 93 153-258 137-230 (366)
64 3hbm_A UDP-sugar hydrolase; PS 21.4 1.9E+02 0.0063 23.6 6.0 56 138-202 158-214 (282)
65 3ipc_A ABC transporter, substr 21.1 2.2E+02 0.0076 23.1 6.6 26 233-258 194-219 (356)
66 3keo_A Redox-sensing transcrip 20.7 1.3E+02 0.0044 23.6 4.6 107 149-265 68-179 (212)
67 1e5p_A Aphrodisin; lipocalin, 20.4 77 0.0026 22.7 3.2 24 241-264 119-142 (151)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=1.3e-43 Score=297.42 Aligned_cols=227 Identities=47% Similarity=0.866 Sum_probs=200.1
Q ss_pred CCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeee-ecCCCCcEEEEEEeccC--
Q 024591 38 KDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFV-GSHSDGIFFNILYHATC-- 109 (265)
Q Consensus 38 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysi-s~~~~~~~~~~~ik~~~-- 109 (265)
-+|..|+.++|++++.+++++.+++|+.+.......++||||+.|++ ...|+||+ +.+.+.+.++|+||.++
T Consensus 6 l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G 85 (243)
T 2eix_A 6 LNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKG 85 (243)
T ss_dssp CCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTC
T ss_pred CCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEcCCC
Confidence 47889999999999999999999999988754457899999999987 47899994 45556789999999983
Q ss_pred CCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHH
Q 024591 110 LLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEE 186 (265)
Q Consensus 110 ~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~ 186 (265)
.+|+| +++||+|.|.||+|+|.++.+..++++||||||||||++++++++....+...+++|+|++|+.+|+++.++
T Consensus 86 ~~S~~l~~l~~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~~~~~~~~~e 165 (243)
T 2eix_A 86 QMSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTE 165 (243)
T ss_dssp HHHHHHHTCCTTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEGGGCTTHHH
T ss_pred CcchHhhcCCCCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHH
Confidence 38887 899999999999999887765568999999999999999999999875334579999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEeC
Q 024591 187 LDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 187 l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~~ 265 (265)
|+++.+++++ ++++++++++.+.|.+..|+++.+.+++.++....+..+|+|||+.|++.+++.|+++|+++++||+|
T Consensus 166 l~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~f 243 (243)
T 2eix_A 166 LDDMAKKYSN-FKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMMNKAMQGHLETLGYTPEQWFIF 243 (243)
T ss_dssp HHHHHHHCTT-EEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEEEESSHHHHHHHHHHHHHHTCCGGGEEEC
T ss_pred HHHHHHHCCC-eEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEeC
Confidence 9999998887 99999999877778888999997778877765445678999999999999999999999999999998
No 2
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=6.3e-43 Score=298.56 Aligned_cols=227 Identities=38% Similarity=0.695 Sum_probs=197.4
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeee-cCCCCcEEEEEEecc----
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVG-SHSDGIFFNILYHAT---- 108 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis-~~~~~~~~~~~ik~~---- 108 (265)
+|..|+.++|++++.+++++.+++|+.+.......++||||+.|++ ...|+||++ ++.+.+.++|+||.+
T Consensus 12 ~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~ 91 (275)
T 1umk_A 12 SPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDT 91 (275)
T ss_dssp CTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSS
T ss_pred CCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCc
Confidence 7889999999999999999999999988754457899999999997 478999955 445678999999987
Q ss_pred -------CCCCcc---cCCCCEEEEeeeeeeeEecC----------------CCCceEEEEEeCCChHHHHHHHHHHHhC
Q 024591 109 -------CLLSLL---ISVNSMQSVANIIGRFRYQP----------------GQVRAFGMTAGGSGITPMFQVTRAILEN 162 (265)
Q Consensus 109 -------~~~S~~---~~~G~~v~i~gp~G~~~~~~----------------~~~~~~vlia~GtGIap~~~~l~~l~~~ 162 (265)
|.+|+| +++||+|.|.||+|.|.+.. ...++++||||||||||+++++++++..
T Consensus 92 ~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~ 171 (275)
T 1umk_A 92 HPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKD 171 (275)
T ss_dssp BTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred ccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhC
Confidence 337887 89999999999999986531 1347899999999999999999999875
Q ss_pred CCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCH
Q 024591 163 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPP 242 (265)
Q Consensus 163 ~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~ 242 (265)
.+...+++|+|++|+.+|+++.++|+++.++++++++++++++++.+.|.+..|+++.+.+++.+.....+..+|+|||+
T Consensus 172 ~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~ 251 (275)
T 1umk_A 172 PDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPP 251 (275)
T ss_dssp TTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCH
T ss_pred CCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCCCCCeEEEEECCH
Confidence 33457999999999999999999999999988856999999988777788899999987777777543357899999999
Q ss_pred HHHH-HHHHHHHHCCCCCCCEEeC
Q 024591 243 PMNK-AMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 243 ~~~~-~~~~~l~~~gv~~~~I~~~ 265 (265)
.|++ .++..|.++|+++++||+|
T Consensus 252 ~m~~~~v~~~L~~~G~~~~~I~~f 275 (275)
T 1umk_A 252 PMIQYACLPNLDHVGHPTERCFVF 275 (275)
T ss_dssp HHHHHTTHHHHHHHTCCGGGEEEC
T ss_pred HHHHHHHHHHHHHcCCCHHHEEeC
Confidence 9999 9999999999999999998
No 3
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=4.2e-40 Score=274.32 Aligned_cols=214 Identities=16% Similarity=0.209 Sum_probs=183.6
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC--CCcc----
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL--LSLL---- 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~--~S~~---- 114 (265)
..++|++++++++++.+++|+.+. .+.++||||+.|++ ...|+||+++.+ +.+.++|+|+.+++ .|++
T Consensus 3 ~~~~V~~~~~~~~~~~~l~l~~~~---~~~~~pGq~v~l~~~~~~~R~ySi~s~~~~~~~l~l~i~~~~~G~~s~~~~~~ 79 (232)
T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIVPDA---AFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDR 79 (232)
T ss_dssp EEEEEEEEEESSSSCEEEEEEESS---CCCCCTTCEEEEESSSSCEEEEECCSCTTSTTCEEEEEC------CCHHHHHH
T ss_pred eEEEEEEEEecCCCEEEEEEecCC---CCCcCCCCEEEEECCCCceeeeecCCCCCCCCcEEEEEEEccCCchhHHHHHh
Confidence 579999999999999999999765 36899999999998 689999966544 45789999999864 6665
Q ss_pred cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhC
Q 024591 115 ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKY 194 (265)
Q Consensus 115 ~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~ 194 (265)
+++||++.|.||+|+|.+..+..++++||||||||||++++++++...+ ...+++|+|++|+.+|+++.++|+++.+++
T Consensus 80 l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~ 158 (232)
T 1qfj_A 80 ILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYDLCELEALSLKH 158 (232)
T ss_dssp HHHHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTTHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhhhHHHHHHHHHHC
Confidence 8999999999999998876555689999999999999999999998763 457899999999999999999999999988
Q ss_pred CCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHH-HHCCCCCCCEEe
Q 024591 195 PDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHL-EALGYTSEMLFQ 264 (265)
Q Consensus 195 ~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l-~~~gv~~~~I~~ 264 (265)
++ ++++++++++++.|.+..|++++..++.. .+ ..+..+|+|||+.|++++++.| +++|+++++||.
T Consensus 159 ~~-~~~~~~~s~~~~~~~g~~g~v~~~~~~~~-~~-~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~ 226 (232)
T 1qfj_A 159 PG-LQVVPVVEQPEAGWRGRTGTVLTAVLQDH-GT-LAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFG 226 (232)
T ss_dssp TT-EEEEEEESSCCTTCCSEESCHHHHHHHHC-SC-CTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEEC
T ss_pred CC-eEEEEEEcCCCCCcCCceeeHHHHHHHhc-CC-ccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 88 99999999888888888999986655543 32 3577899999999999999999 999999999985
No 4
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=1e-39 Score=277.97 Aligned_cols=226 Identities=38% Similarity=0.696 Sum_probs=189.0
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCC-CCcEEEEEEecc----
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHS-DGIFFNILYHAT---- 108 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~-~~~~~~~~ik~~---- 108 (265)
+|..+..++|++++.+++++.+++|+.+.......++||||+.|.+ ...|+||+++.+ +.+.++|+||.+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~ 87 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNE 87 (270)
T ss_dssp ---CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSC
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccCc
Confidence 5778899999999999999999999988764457899999999986 478999966544 568999999975
Q ss_pred -------CCCCcc---cCCCCEEEEeeeeee--------eEecC--CCCceEEEEEeCCChHHHHHHHHHHHhCC-CCCc
Q 024591 109 -------CLLSLL---ISVNSMQSVANIIGR--------FRYQP--GQVRAFGMTAGGSGITPMFQVTRAILENP-NDKT 167 (265)
Q Consensus 109 -------~~~S~~---~~~G~~v~i~gp~G~--------~~~~~--~~~~~~vlia~GtGIap~~~~l~~l~~~~-~~~~ 167 (265)
|.+|+| +++||+|.|.||+|. |.++. ...++++||||||||||+++++++++... +...
T Consensus 88 ~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~~ 167 (270)
T 2cnd_A 88 HPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHT 167 (270)
T ss_dssp BTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCC
T ss_pred ccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCCCCc
Confidence 337887 899999999999997 44442 23579999999999999999999998752 2357
Q ss_pred EEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecC---CCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHH
Q 024591 168 KVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ---PPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM 244 (265)
Q Consensus 168 ~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~---~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~ 244 (265)
+++|+|++|+.+|+++.++|+++.+++++++++++++++ +++.|.+..|++++..+++.++....+..+|+|||+.|
T Consensus 168 ~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m 247 (270)
T 2cnd_A 168 EMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM 247 (270)
T ss_dssp EEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred EEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEEECCHHH
Confidence 999999999999999999999999988866999988887 34567778999998777777665345678999999999
Q ss_pred HHH-HHHHHHHCCCCCCCEEe
Q 024591 245 NKA-MAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 245 ~~~-~~~~l~~~gv~~~~I~~ 264 (265)
+++ ++..|+++|+++++|+.
T Consensus 248 ~~~~~~~~L~~~G~~~~~i~~ 268 (270)
T 2cnd_A 248 IQFAISPNLEKMKYDMANSFV 268 (270)
T ss_dssp HHTTTHHHHHTTTCCHHHHEE
T ss_pred HHHHHHHHHHHcCCChhhcEE
Confidence 997 58999999999998875
No 5
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=4.6e-40 Score=277.15 Aligned_cols=223 Identities=17% Similarity=0.261 Sum_probs=189.9
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEEC-C-CCC-cccCCCCCeEEEEee---ceEeeeeeecCC-CCcEEEEEEecc--C
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFEL-P-TPT-SVLGLPIGQHISCRK---EIVKMIFVGSHS-DGIFFNILYHAT--C 109 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~pGq~v~l~~---~~~r~ysis~~~-~~~~~~~~ik~~--~ 109 (265)
....++.++|++++.+++++.+++|+. + +.. ....++||||+.|++ ..+|+||+++.+ +.+.++|+|+.+ |
T Consensus 6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~i~vk~~~~G 85 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNPEGRLEFLIRVLPEG 85 (250)
T ss_dssp CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSCSSSEEECCBCCSSSSCCEEEEECCCTTS
T ss_pred CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCCCccccccccCCCCCCCCeEEEEEEECCCC
Confidence 345677999999999999999999997 6 531 247899999999998 578999966554 478899999999 5
Q ss_pred CCCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHH
Q 024591 110 LLSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKE 185 (265)
Q Consensus 110 ~~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~ 185 (265)
.+|+| +++||+|.|.||+|.|.+..+..++++||||||||||++++++++...+ ...+++|+|++|+.+++++.+
T Consensus 86 ~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~ 164 (250)
T 1tvc_A 86 RFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGVNTEPELFYID 164 (250)
T ss_dssp SSHHHHHHHSSSSSEEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEECSSSTTCCCHH
T ss_pred CchHHHHhcCCCCCEEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC-CCceEEEEEEeCCHHHhhhHH
Confidence 58887 7999999999999998876555589999999999999999999998762 457899999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 186 ELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 186 ~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+|+++.+++++ ++++++++++++.|.+..|++++.+. +.+++...+..+|+|||+.|++.+++.|+++|+++++||.
T Consensus 165 el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~-~~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~ 241 (250)
T 1tvc_A 165 ELKSLERSMRN-LTVKACVWHPSGDWEGEQGSPIDALR-EDLESSDANPDIYLCGPPGMIDAACELVRSRGIPGEQVFF 241 (250)
T ss_dssp HHHHHHHHSSS-CEEEECCSSCSSCCSSSSSSSSHHHH-HHHHHSSSSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEE
T ss_pred HHHHHHHhCCC-eEEEEEeccCCCCcCCccceehHHHH-hhhhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 99999988888 99999998877778888999986544 4433212467899999999999999999999999999985
No 6
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.5e-39 Score=272.70 Aligned_cols=214 Identities=18% Similarity=0.208 Sum_probs=185.4
Q ss_pred CCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---c----eEeeeeeecCCCCcEEEEEEecc-----
Q 024591 41 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---E----IVKMIFVGSHSDGIFFNILYHAT----- 108 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~----~~r~ysis~~~~~~~~~~~ik~~----- 108 (265)
+.|++++|++++.+++++.+++|+.++......++||||+.|.+ . .+|+||+++.++++.++|+||.+
T Consensus 1 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~~~~~i~vk~~~~~~~ 80 (243)
T 4eh1_A 1 RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNGREYRISVKREGVGSD 80 (243)
T ss_dssp CCCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCSSCEEEEEECTTTTSS
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCCCCCeEEEEEEEeecCCC
Confidence 46899999999999999999999988765457899999999998 1 57999988777778899999998
Q ss_pred --CCCCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccc
Q 024591 109 --CLLSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDIL 182 (265)
Q Consensus 109 --~~~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~ 182 (265)
|.+|+| +++||+|.|.||+|.|.++ +..++++||||||||||++++++++...+. .. ++|+|++|+.+|++
T Consensus 81 ~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-~~-v~l~~~~r~~~~~~ 157 (243)
T 4eh1_A 81 NPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-SG-VTYLYACNSAKEHT 157 (243)
T ss_dssp SCCHHHHHHHHHCCTTCEEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-CS-EEEEEEESSGGGCT
T ss_pred CCCeehhHHHhcCCCCCEEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-Ce-EEEEEEeCChhhhh
Confidence 447877 7999999999999998876 566899999999999999999999998742 23 99999999999999
Q ss_pred cHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCE
Q 024591 183 LKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEML 262 (265)
Q Consensus 183 ~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I 262 (265)
+.++|+++.+++ + ++++.+++++.+.+. ..|+++...+ .++ ..+..+|+|||+.|++++++.|+++|+++++|
T Consensus 158 ~~~el~~l~~~~-~-~~~~~~~s~~~~~~~-~~g~~~~~~~--~~~--~~~~~vyvCGp~~m~~~v~~~l~~~g~~~~~i 230 (243)
T 4eh1_A 158 FAQETAQLIAQQ-G-WMQQVWYRDESADDV-LQGEMQLAEL--ILP--IEDGDFYLCGPIGFMQYVVKQLLALGVDKARI 230 (243)
T ss_dssp THHHHHHHHHHH-T-CEEEEEESSCCCTTC-EESSCCCTTS--CCC--TTTCEEEEEECHHHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHhC-C-eEEEEEEccCCCccc-ccCCccHHHe--ecc--CCCcEEEEECCHHHHHHHHHHHHHcCCCHHHE
Confidence 999999999877 5 899999988665444 6788886555 333 36789999999999999999999999999999
Q ss_pred Ee
Q 024591 263 FQ 264 (265)
Q Consensus 263 ~~ 264 (265)
|.
T Consensus 231 ~~ 232 (243)
T 4eh1_A 231 HY 232 (243)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 7
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=3.7e-38 Score=282.93 Aligned_cols=225 Identities=18% Similarity=0.286 Sum_probs=191.4
Q ss_pred CCCCCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-------ceEeeeeeecCCCCcEEEEEEec
Q 024591 35 KKPKDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-------EIVKMIFVGSHSDGIFFNILYHA 107 (265)
Q Consensus 35 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-------~~~r~ysis~~~~~~~~~~~ik~ 107 (265)
..+..+..|+.++|++++.+++++..++|+.++......++||||+.|++ ..+|+||+++.++.+.++|+||.
T Consensus 146 ~~~~~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~~~~~i~Vk~ 225 (403)
T 1cqx_A 146 EQPGGWKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKR 225 (403)
T ss_dssp TSTTCCSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCSSCEEEEEEC
T ss_pred cccCCCCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCCCCeEEEEEEE
Confidence 44556678999999999999999999999987654346899999999987 24799998777767889999999
Q ss_pred cC------C-CCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeC
Q 024591 108 TC------L-LSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANV 176 (265)
Q Consensus 108 ~~------~-~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r 176 (265)
.+ + +|+| +++||+|.|+||+|.|.++.+..++++||||||||||++++++++.. +...+++|+|++|
T Consensus 226 ~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~~~~~v~l~~~~r 303 (403)
T 1cqx_A 226 EGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--APPRQVVFVHGAR 303 (403)
T ss_dssp CCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--SSCCCEEEEEEES
T ss_pred CCCCCCCCCeehHHHhhCCCCCCEEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--CCCCcEEEEEEeC
Confidence 83 4 7877 89999999999999998764556899999999999999999999986 2347899999999
Q ss_pred CCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCC-----CCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHH
Q 024591 177 TYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESW-----NGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH 251 (265)
Q Consensus 177 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~-----~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~ 251 (265)
+.+++++.++|+++.+++++ ++++++++++...+ .+..|+++.+.+.+.... .+..+|+|||+.|++.++..
T Consensus 304 ~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~~--~~~~vyvCGp~~m~~~v~~~ 380 (403)
T 1cqx_A 304 NSAVHAMRDRLREAAKTYEN-LDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILL--PDADYYICGPIPFMRMQHDA 380 (403)
T ss_dssp CSSSCHHHHHHHHHHHHCTT-EEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHCC--TTCEEEEESSHHHHHHHHHH
T ss_pred ChhhCcHHHHHHHHHHhCCC-cEEEEEECCCCcccccccccCcCCCcCHHHHhhccCC--CCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999999988 99999988866544 345789987666653211 26789999999999999999
Q ss_pred HHHCCCCCCCEEe
Q 024591 252 LEALGYTSEMLFQ 264 (265)
Q Consensus 252 l~~~gv~~~~I~~ 264 (265)
|+++|+++++||.
T Consensus 381 L~~~Gv~~~~i~~ 393 (403)
T 1cqx_A 381 LKNLGIHEARIHY 393 (403)
T ss_dssp HHHTTCCGGGEEE
T ss_pred HHHcCCCHHHeEE
Confidence 9999999999985
No 8
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=2.5e-38 Score=283.43 Aligned_cols=226 Identities=18% Similarity=0.238 Sum_probs=191.9
Q ss_pred CCCCCCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---c----eEeeeeeecCCCCcEEEEEEec
Q 024591 35 KKPKDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---E----IVKMIFVGSHSDGIFFNILYHA 107 (265)
Q Consensus 35 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~----~~r~ysis~~~~~~~~~~~ik~ 107 (265)
..|..+..|+.++|++++.+++++..++|+.++......++||||+.|++ . .+|+||+++.+..+.++|+||.
T Consensus 144 ~~~~~w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~~~~~i~Vk~ 223 (396)
T 1gvh_A 144 SKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKR 223 (396)
T ss_dssp HSTTCCSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCCSSCEEEEEEC
T ss_pred cccCCCCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCCCCeEEEEEEE
Confidence 34555678999999999999999999999987654346899999999997 2 4899998777667889999999
Q ss_pred c--CCCCcc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCccc
Q 024591 108 T--CLLSLL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDI 181 (265)
Q Consensus 108 ~--~~~S~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~ 181 (265)
. |.+|+| +++||+|.++||+|.|.++.+..++++||||||||||++++++++... +...+++|+|++|+.+++
T Consensus 224 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~-~~~~~v~l~~~~r~~~~~ 302 (396)
T 1gvh_A 224 EEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKA-GHTAQVNWFHAAENGDVH 302 (396)
T ss_dssp CTTCHHHHHHHHTCCTTCEEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHH-TCCSCEEEEEEESCTTTC
T ss_pred cCCCcchHHHHhcCCCCCEEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhc-CCCCcEEEEEEeCCHHHh
Confidence 8 448887 789999999999999987645568999999999999999999999875 245789999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEEecCCCCC-----CCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCC
Q 024591 182 LLKEELDGFAAKYPDQFTIYYVLNQPPES-----WNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALG 256 (265)
Q Consensus 182 ~~~~~l~~l~~~~~~~~~~~~~~s~~~~~-----~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~g 256 (265)
++.++|+++.+++++ ++++.+++++... ..+..|+++.+.+.+... ..+..+|+|||+.|++++++.|+++|
T Consensus 303 ~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~~--~~~~~vyvCGp~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 303 AFADEVKELGQSLPR-FTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFS--DPTMQFYLCGPVGFMQFTAKQLVDLG 379 (396)
T ss_dssp CSHHHHHHHHHTSSS-EEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCCC--CTTCEEEEESCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHCCC-eEEEEEECCCCccccccCccCccCcCCHHHHhhccC--CCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 999999999998888 9999888876532 234678998765655322 12778999999999999999999999
Q ss_pred CCCCCEEe
Q 024591 257 YTSEMLFQ 264 (265)
Q Consensus 257 v~~~~I~~ 264 (265)
+++++||.
T Consensus 380 v~~~~i~~ 387 (396)
T 1gvh_A 380 VKQENIHY 387 (396)
T ss_dssp CCGGGEEE
T ss_pred CCHHHEEE
Confidence 99999985
No 9
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=2.8e-38 Score=277.40 Aligned_cols=220 Identities=19% Similarity=0.280 Sum_probs=187.7
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee---ceEeeeeeecCCCCcEEEEEEeccCC--CCc
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK---EIVKMIFVGSHSDGIFFNILYHATCL--LSL 113 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~~~r~ysis~~~~~~~~~~~ik~~~~--~S~ 113 (265)
.+..++.++|++++.+++++.+++|+.+.......|+||||+.|.+ ..+|+||+++.+..+.++|+||.+++ +|+
T Consensus 104 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~l~~~vk~~~~G~~S~ 183 (338)
T 1krh_A 104 TKIHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVRNVPQGKMSE 183 (338)
T ss_dssp CCCEEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTSSCEEEEECCSCTTCSEEEEEEECCTTCHHHH
T ss_pred CCceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCCCccccccccCCCCCCeEEEEEEEcCCCCchh
Confidence 3456779999999999999999999988742347899999999998 57899997665558899999999943 777
Q ss_pred c----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 114 L----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 114 ~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
| +++||+|.|.||+|+|.++.+ .++++||||||||||++++++++...+ ...+++|+|++|+.+|+++.++|++
T Consensus 184 ~L~~~l~~Gd~v~v~gP~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~-~~~~v~l~~~~r~~~d~~~~~el~~ 261 (338)
T 1krh_A 184 YLSVQAKAGDKMSFTGPFGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLVALEQLDA 261 (338)
T ss_dssp HHHTTCCTTCEEEEEEEECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCCCHHHHHH
T ss_pred hHhhccCCCCEEEEECCccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC-CCCeEEEEEEeCCHHHhhhHHHHHH
Confidence 7 799999999999999877654 389999999999999999999998763 3578999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+.+++++ +++++++++++..|. ..|++++.+.++.+++ .+..+|+|||+.|++++++.|+++|+++++||.
T Consensus 262 l~~~~~~-~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~~--~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~ 332 (338)
T 1krh_A 262 LQQKLPW-FEYRTVVAHAESQHE-RKGYVTGHIEYDWLNG--GEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLF 332 (338)
T ss_dssp HHHHCTT-EEEEEEETTCCSSSS-EESCSGGGCCGGGGGG--GCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred HHHhCCC-eEEEEEEecCCCCCC-ccCccCHHHHHhhccc--CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 9998888 999999998766554 6788875443344433 467899999999999999999999999999985
No 10
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=2.1e-37 Score=277.69 Aligned_cols=213 Identities=15% Similarity=0.234 Sum_probs=187.2
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCccc----CCCCCeEEEEee--c-------eEeeeeeecCCCCcEEEEEEe
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVL----GLPIGQHISCRK--E-------IVKMIFVGSHSDGIFFNILYH 106 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~pGq~v~l~~--~-------~~r~ysis~~~~~~~~~~~ik 106 (265)
...|++++|++++++++++..++|+.++..... .++||||+.|++ . .+|+||+++.++++.++|.||
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~~~~~i~Vk 225 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNGLRFAVK 225 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCTTCEEEEEE
T ss_pred CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCCCCeEEEEEE
Confidence 788999999999999999999999987653222 899999999996 2 479999888777788999999
Q ss_pred cc-------CC-CCcc----cCCCCEEEEeeeeeeeEecCC----CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEE
Q 024591 107 AT-------CL-LSLL----ISVNSMQSVANIIGRFRYQPG----QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVH 170 (265)
Q Consensus 107 ~~-------~~-~S~~----~~~G~~v~i~gp~G~~~~~~~----~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~ 170 (265)
.. ++ +|+| +++||+|.++||+|.|.++.+ ..++++||||||||||++++++++...+ ...+++
T Consensus 226 ~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~-~~~~v~ 304 (399)
T 4g1v_A 226 MEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN-PNRPIY 304 (399)
T ss_dssp CCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC-TTSCEE
T ss_pred eccCCCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC-CCCCEE
Confidence 93 23 7777 899999999999999988765 4689999999999999999999998763 457899
Q ss_pred EEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHH
Q 024591 171 LIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAA 250 (265)
Q Consensus 171 L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~ 250 (265)
++|++|+.+++++.++++++.+++++ ++++.+++++. |+++.+.+.+.+++ +..+|+|||+.|++++++
T Consensus 305 l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~-------g~~~~~~l~~~~~~---~~~vyvCGp~~m~~~v~~ 373 (399)
T 4g1v_A 305 WIQSSYDEKTQAFKKHVDELLAECAN-VDKIIVHTDTE-------PLINAAFLKEKSPA---HADVYTCGSLAFMQAMIG 373 (399)
T ss_dssp EEEEESSSTTSTTHHHHHHHHTTCSS-EEEEEEETTTS-------CCCCHHHHHHHSCS---SCEEEEEECHHHHHHHHH
T ss_pred EEEecCCHHHhhhHHHHHHHHHhCCC-cEEEEEEeCCC-------CcccHHHHHhhCCC---CCEEEEECCHHHHHHHHH
Confidence 99999999999999999999999988 99999888652 78988788877653 789999999999999999
Q ss_pred HHHHCCCCCCCEEe
Q 024591 251 HLEALGYTSEMLFQ 264 (265)
Q Consensus 251 ~l~~~gv~~~~I~~ 264 (265)
.|.++|+++++||.
T Consensus 374 ~L~~~Gv~~~~i~~ 387 (399)
T 4g1v_A 374 HLKELEHRDDMIHY 387 (399)
T ss_dssp HHHHTTCCGGGEEE
T ss_pred HHHHcCCCHHHeee
Confidence 99999999999985
No 11
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=6.8e-38 Score=263.46 Aligned_cols=217 Identities=16% Similarity=0.168 Sum_probs=180.5
Q ss_pred CeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEecc--CCCCcc
Q 024591 42 NFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHAT--CLLSLL 114 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~--~~~S~~ 114 (265)
.|+.++|++++.+++++.+++|+ +. .+.++||||+.|++ ...|+||+++.+..+.++|+|+.+ |.+|+|
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~---~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~~~l~~~v~~~~~G~~s~~ 78 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-AP---VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPR 78 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CC---CCCCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHH
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CC---CCCcCCCCcEEEEccCCCCeeeeeecccCCCCCCcEEEEEEEeCCCchhhH
Confidence 58899999999999999999997 43 26899999999998 468999977666568899999988 558888
Q ss_pred ---cCCCCEEEEe-eeeeeeEecCCC-CceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHH
Q 024591 115 ---ISVNSMQSVA-NIIGRFRYQPGQ-VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDG 189 (265)
Q Consensus 115 ---~~~G~~v~i~-gp~G~~~~~~~~-~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~ 189 (265)
+++||+|.|. ||+|.|.++... .++++||||||||||++++++++... +...+++|+|++|+.+++++.++|++
T Consensus 79 l~~l~~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~-~~~~~v~l~~~~r~~~~~~~~~el~~ 157 (248)
T 1fdr_A 79 LAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDL-DRFKNLVLVHAARYAADLSYLPLMQE 157 (248)
T ss_dssp HHTCCTTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSC-TTCSEEEEEEEESSGGGCTTHHHHHH
T ss_pred HHhCCCcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhh-CCCCcEEEEEEcCCHHHhhHHHHHHH
Confidence 8999999999 999998876542 58999999999999999999998754 23579999999999999999999999
Q ss_pred HHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhC------CCCCCCcEEEEeCCHHHHHHHHHHH-HHCCCCCCCE
Q 024591 190 FAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHC------PAPASDIQVLRCGPPPMNKAMAAHL-EALGYTSEML 262 (265)
Q Consensus 190 l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~------~~~~~~~~v~vCGp~~~~~~~~~~l-~~~gv~~~~I 262 (265)
+.+++++++++++++++++. +.+..|++++...+..+ .....+..+|+|||+.|++++++.| +++|+++++|
T Consensus 158 l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~~~G~~~~~i 236 (248)
T 1fdr_A 158 LEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLR 236 (248)
T ss_dssp HHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHHHHCCCBCBT
T ss_pred HHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHHHHHHHHcCCChHHc
Confidence 99887655999988887643 23457888765433221 1113578999999999999999999 9999999987
Q ss_pred Ee
Q 024591 263 FQ 264 (265)
Q Consensus 263 ~~ 264 (265)
+.
T Consensus 237 ~~ 238 (248)
T 1fdr_A 237 RR 238 (248)
T ss_dssp TB
T ss_pred CC
Confidence 53
No 12
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.5e-37 Score=267.21 Aligned_cols=222 Identities=21% Similarity=0.383 Sum_probs=186.0
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee----------------------------------c
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK----------------------------------E 85 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~----------------------------------~ 85 (265)
+..+..++|++++.+++++.+++|+.++.. .+.++||||+.|.+ .
T Consensus 6 ~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 84 (290)
T 2r6h_A 6 GVKEWECEVLSNKNVSTFIKEFVVKLPEGE-TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEE 84 (290)
T ss_dssp CCCEEEEEEEEEEESSSSEEEEEEECSTTC-CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSC
T ss_pred cceEEEEEEEEeeecCCCeEEEEEEcCCCC-ccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCC
Confidence 445678999999999999999999987642 36799999999964 3
Q ss_pred eEeeeeeecCC-CCcEEEEEEecc-----------------CCCCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEE
Q 024591 86 IVKMIFVGSHS-DGIFFNILYHAT-----------------CLLSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTA 144 (265)
Q Consensus 86 ~~r~ysis~~~-~~~~~~~~ik~~-----------------~~~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia 144 (265)
..|+||+++.+ +.+.++|+|+.+ |.+|+| +++||+|.|.||+|.|.++ +..++++|||
T Consensus 85 ~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~-~~~~~~vlia 163 (290)
T 2r6h_A 85 TVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ-DTDAEMLYIG 163 (290)
T ss_dssp EEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC-SSSCEEEEEE
T ss_pred cceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC-CCCCeEEEEE
Confidence 57999966544 568999999962 226777 8999999999999998765 4568999999
Q ss_pred eCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCC--CCCCCcccCCCHHH
Q 024591 145 GGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP--ESWNGGVGFVSKEM 222 (265)
Q Consensus 145 ~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~~~~ 222 (265)
|||||||+++++++++.......+++|+|++|+.+|+++.++|+++.+++++ ++++++++++. +.|.+..|+++...
T Consensus 164 gGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~g~~g~v~~~~ 242 (290)
T 2r6h_A 164 GGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPN-FKFHIALSDPQPEDNWTGYVGFIHQVI 242 (290)
T ss_dssp EGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTT-EEEEEEESSCCGGGCCCSCBSCHHHHH
T ss_pred CccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEccCCcccCCCCeeEecCHHH
Confidence 9999999999999888753345789999999999999999999999988888 99999998753 56777889998766
Q ss_pred HhhhCCC--CCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 223 IQTHCPA--PASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 223 l~~~~~~--~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
+++.+.. ...+..+|+|||+.|+++++..|+++|+++++||.
T Consensus 243 ~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~ 286 (290)
T 2r6h_A 243 YDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNMLFF 286 (290)
T ss_dssp HHHTTTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHhHHhhccCcCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEe
Confidence 5665542 12467899999999999999999999999999985
No 13
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=2e-36 Score=257.94 Aligned_cols=213 Identities=13% Similarity=0.146 Sum_probs=176.5
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeecCCCCcEEEEEEecc--CCCCcc-
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGSHSDGIFFNILYHAT--CLLSLL- 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~~~~~~~~~~~ik~~--~~~S~~- 114 (265)
..++|++++.+++++.+++|+.++. +.++||||+.|++ ...|+||+++.+..+.++|+|+.+ |.+|+|
T Consensus 17 ~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~~l~v~~~~~G~~s~~l 93 (272)
T 2bgi_A 17 DAQTVTSVRHWTDTLFSFRVTRPQT---LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFYSIKVPDGPLTSRL 93 (272)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEECTTSCEEEEEEECCSCTTCSEEEEEEECCTTCTTHHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEeCCCC---CccCCCCEEEEEeccCCCCeeeeeeeeccCCCCCeEEEEEEEccCCCchhHH
Confidence 5799999999999999999998764 6799999999987 368999977666668999999988 558888
Q ss_pred --cCCCCEEEEe-eeeeeeEecCCC-CceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHH-H
Q 024591 115 --ISVNSMQSVA-NIIGRFRYQPGQ-VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELD-G 189 (265)
Q Consensus 115 --~~~G~~v~i~-gp~G~~~~~~~~-~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~-~ 189 (265)
+++||++.+. ||+|.|.++... .++++||||||||||++++++++... +...+++|+|++|+.+|+++.++|+ +
T Consensus 94 ~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~-~~~~~v~l~~~~r~~~~~~~~~el~~~ 172 (272)
T 2bgi_A 94 QHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAY-EKFDEVIMMHACRTVAELEYGRQLVEA 172 (272)
T ss_dssp TTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGG-TSCSEEEEEEEESSSGGGHHHHHHHHH
T ss_pred HhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhc-CCCCcEEEEEEeCCHHHhhHHHHHHHH
Confidence 8999999999 999998876543 58999999999999999999988765 2347999999999999999999999 9
Q ss_pred HHH-----hC-CCCeEEEEEecCCCCCCCCcccCCCHHHHhhh------CC-CCCCCcEEEEeCCHHHHHHHHHHHHHCC
Q 024591 190 FAA-----KY-PDQFTIYYVLNQPPESWNGGVGFVSKEMIQTH------CP-APASDIQVLRCGPPPMNKAMAAHLEALG 256 (265)
Q Consensus 190 l~~-----~~-~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~------~~-~~~~~~~v~vCGp~~~~~~~~~~l~~~g 256 (265)
+.+ ++ +.++++++++++++ .+..|++++...+.. ++ ....+..+|+|||+.|++++++.|+++|
T Consensus 173 l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G 249 (272)
T 2bgi_A 173 LQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFNVDVMKVLESYG 249 (272)
T ss_dssp HHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHHHHHHHHHHTTT
T ss_pred HHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 987 54 23399988888763 245778876543322 12 1135789999999999999999999999
Q ss_pred CCCCCEE
Q 024591 257 YTSEMLF 263 (265)
Q Consensus 257 v~~~~I~ 263 (265)
+++++|+
T Consensus 250 ~~~~~i~ 256 (272)
T 2bgi_A 250 LREGANS 256 (272)
T ss_dssp CCBCBTT
T ss_pred CChHHcC
Confidence 9998775
No 14
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=8.8e-38 Score=266.19 Aligned_cols=217 Identities=12% Similarity=0.109 Sum_probs=175.5
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEecc--CCCC
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHAT--CLLS 112 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~--~~~S 112 (265)
.+.|++++|++++.+++++.+++|+.++. ..++||||+.|++ ..+|+||+++.++++.++++|+.. |.+|
T Consensus 16 ~~~~~~~~V~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~~v~~~~~G~~s 92 (271)
T 4fk8_A 16 MSKFDTATVLSVHHWTDTLFSFTCTRDQA---LRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLT 92 (271)
T ss_dssp --CEEEEEEEEEEEEETTEEEEEECCCTT---CCCCTTCEEEEEEEETTEEEEEEEECCSCTTSSSEEEEEECCTTCTTH
T ss_pred cccceeEEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCEEEEEccCCCceeeeeEeccCCCCCCcEEEEEEEECCCchh
Confidence 45799999999999999999999987753 7899999999998 468999988777778899999988 5588
Q ss_pred cc---cCCCCEEEEe-eeeeeeEecC-CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHH
Q 024591 113 LL---ISVNSMQSVA-NIIGRFRYQP-GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEEL 187 (265)
Q Consensus 113 ~~---~~~G~~v~i~-gp~G~~~~~~-~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l 187 (265)
++ +++||++.+. ||+|.|.++. ...++++||||||||||++++++++... +...+++|+|++|+.+|+++.++|
T Consensus 93 ~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~-~~~~~v~l~~~~r~~~~~~~~~el 171 (271)
T 4fk8_A 93 SRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIY-ERFDKVVLTHTCRLKGELAYMDYI 171 (271)
T ss_dssp HHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHH-HHCSEEEEEECCCSHHHHHHHHHH
T ss_pred hHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhc-CCCCCEEEEEecCCHHHHhHHHHH
Confidence 88 8999999999 9999988764 3568999999999999999999998754 234699999999999999999999
Q ss_pred HHHHHhCCC-------CeEEEEEecCCCCCCCCcccCCCHHHHhh----hC--C-CCCCCcEEEEeCCHHHHHHHHHHHH
Q 024591 188 DGFAAKYPD-------QFTIYYVLNQPPESWNGGVGFVSKEMIQT----HC--P-APASDIQVLRCGPPPMNKAMAAHLE 253 (265)
Q Consensus 188 ~~l~~~~~~-------~~~~~~~~s~~~~~~~~~~g~~~~~~l~~----~~--~-~~~~~~~v~vCGp~~~~~~~~~~l~ 253 (265)
+++.+++++ +++++.++++++. +..|+++....+. .+ + ...++..+|+|||+.|++++++.|+
T Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~~~v~~~l~ 248 (271)
T 4fk8_A 172 KHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKDTTELLK 248 (271)
T ss_dssp HTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 998877662 3788777776543 3467777544331 11 1 1245789999999999999999999
Q ss_pred HCCCCCCCEE
Q 024591 254 ALGYTSEMLF 263 (265)
Q Consensus 254 ~~gv~~~~I~ 263 (265)
++|+++++++
T Consensus 249 ~~gv~~~~i~ 258 (271)
T 4fk8_A 249 KAGLVEGKNS 258 (271)
T ss_dssp HTTCCBCBTT
T ss_pred HcCCchhhcC
Confidence 9999998765
No 15
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=8.4e-37 Score=258.19 Aligned_cols=216 Identities=13% Similarity=0.166 Sum_probs=177.2
Q ss_pred CCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeecCCCCcEEEEEEecc--CCCCc
Q 024591 41 ENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGSHSDGIFFNILYHAT--CLLSL 113 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~~~~~~~~~~~ik~~--~~~S~ 113 (265)
+.|+.++|++++.+++++.+++|+.+.. ..++||||+.|.+ ...|+||+++.+..+.++|+|+.+ |.+|+
T Consensus 1 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~~i~~~~~G~~s~ 77 (257)
T 2qdx_A 1 SNLYTERVLSVHHWNDTLFSFKTTRNPG---LRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTS 77 (257)
T ss_dssp CCSEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEEETTEEEEEEEECCSCTTSSEEEEEEECCTTCTTHH
T ss_pred CceEEEEEEEEEEcCCCeEEEEEeCCCC---CccCCCCEEEEEecCCCCceeeeeEeecCCCCCeEEEEEEEeCCCcchh
Confidence 3688999999999999999999998764 6799999999997 378999977766668999999988 55888
Q ss_pred c---cCCCCEEEEe-eeeeeeEecCC-CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHH
Q 024591 114 L---ISVNSMQSVA-NIIGRFRYQPG-QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELD 188 (265)
Q Consensus 114 ~---~~~G~~v~i~-gp~G~~~~~~~-~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~ 188 (265)
+ +++||+|.|. ||+|.|.++.. ..++++||||||||||++++++++... +...+++|+|++|+.+++++.++|+
T Consensus 78 ~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~-~~~~~v~l~~~~r~~~~~~~~~el~ 156 (257)
T 2qdx_A 78 RLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETY-ERYEKVILVHGVRWVSELAYADFIT 156 (257)
T ss_dssp HHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHH-HHCSEEEEEEEESSGGGCTTHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhc-CCCCeEEEEEEcCCHHHhHhHHHHH
Confidence 7 8999999999 89999887643 258999999999999999999988654 1236999999999999999999999
Q ss_pred -HHHH-----hC--CCCeEEEEEecCCCCCCCCcccCCCHHHHhhh------CC-CCCCCcEEEEeCCHHHHHHHHHHHH
Q 024591 189 -GFAA-----KY--PDQFTIYYVLNQPPESWNGGVGFVSKEMIQTH------CP-APASDIQVLRCGPPPMNKAMAAHLE 253 (265)
Q Consensus 189 -~l~~-----~~--~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~------~~-~~~~~~~v~vCGp~~~~~~~~~~l~ 253 (265)
++.+ ++ ++ +++++++++++ .+..|+++....+.. ++ ....+..+|+|||+.|++++++.|+
T Consensus 157 ~~l~~~~~~~~~~~~~-~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~l~ 232 (257)
T 2qdx_A 157 KVLPEHEYFGDQVKEK-LIYYPLVTREP---FRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLD 232 (257)
T ss_dssp TTGGGCTTTHHHHHHH-EEEEEEESSSC---CSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHhchhhhccCCCc-EEEEEEecCCC---cccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHHHHHHHHH
Confidence 8865 22 34 89988888763 235678775443322 11 1135789999999999999999999
Q ss_pred HCCCCCC-------CEEe
Q 024591 254 ALGYTSE-------MLFQ 264 (265)
Q Consensus 254 ~~gv~~~-------~I~~ 264 (265)
++|++++ +||.
T Consensus 233 ~~G~~~~~~~~~~~~i~~ 250 (257)
T 2qdx_A 233 SFGLKISPRMGEPGDYLI 250 (257)
T ss_dssp HTTCCBCSSTTSCBSEEE
T ss_pred HcCCChHHhcCCCCcEEE
Confidence 9999999 8873
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=1.9e-36 Score=263.33 Aligned_cols=223 Identities=16% Similarity=0.242 Sum_probs=180.8
Q ss_pred ccCCCCCCCCeEEEEEEEEEEec-----CCEEEEEEECCCCCcccCCCCCeEEEEee---c-------------------
Q 024591 33 SSKKPKDPENFKEFKLVKRLQLS-----HNVAKFTFELPTPTSVLGLPIGQHISCRK---E------------------- 85 (265)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pGq~v~l~~---~------------------- 85 (265)
+..+|++| ..++|++++.++ .++.+++|+.+.. +.|.+|||+.|.. .
T Consensus 8 ~~~~~~~p---~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (316)
T 3jqq_A 8 NLYTVKNP---LKCKIVDKINLVRPNSPNEVYHLEINHNGL---FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTT 81 (316)
T ss_dssp TSSCSSSC---EEEEEEEEEECSCTTCSCCEEEEEEECTTC---CCCCTTCEEEECTTCC--------------------
T ss_pred eeecCCCC---EEEEEEeeEEccCCCCCCceEEEEEeCCCC---cceecCcEeEEECCCccccccccccccccccccccc
Confidence 34455444 589999999998 8999999998654 9999999999876 1
Q ss_pred -----------------eEeeeeeecCCCCcEEEEEEecc--------------CCCCcc---cCCCCEEEEeeeeeeeE
Q 024591 86 -----------------IVKMIFVGSHSDGIFFNILYHAT--------------CLLSLL---ISVNSMQSVANIIGRFR 131 (265)
Q Consensus 86 -----------------~~r~ysis~~~~~~~~~~~ik~~--------------~~~S~~---~~~G~~v~i~gp~G~~~ 131 (265)
.+|+||+++.+..+.++|+||.. |.+|++ +++||+|.|.||+|.|.
T Consensus 82 ~~~~h~~~~~~~~~g~~~~R~ySIaS~p~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~ 161 (316)
T 3jqq_A 82 NHTNHNNIALSHIKKQRCARLYSISSSNNMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFN 161 (316)
T ss_dssp ---------------CCCCEEEEBCSCTTSSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCC
T ss_pred ccccccccccccCCCcccceeeecccCCCCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceE
Confidence 58999988877768899999975 336777 99999999999999998
Q ss_pred ecCC---CCceEEEEEeCCChHHHHHHHHHHHhCCC---------CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeE
Q 024591 132 YQPG---QVRAFGMTAGGSGITPMFQVTRAILENPN---------DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFT 199 (265)
Q Consensus 132 ~~~~---~~~~~vlia~GtGIap~~~~l~~l~~~~~---------~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~ 199 (265)
++.+ ..+++|||||||||||++++++++...+. ...+++|+|++|+.++++|.++|+++.++++++++
T Consensus 162 l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~ 241 (316)
T 3jqq_A 162 LPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNIN 241 (316)
T ss_dssp CCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEE
T ss_pred cCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcEE
Confidence 7764 25899999999999999999999987531 24789999999999999999999999999885599
Q ss_pred EEEEecCCCCCCCCcccCCCHHHHhh------hCCCCCCCcEEEEeCCHHHHHHHHHHHHHCC----CCCCCEEe
Q 024591 200 IYYVLNQPPESWNGGVGFVSKEMIQT------HCPAPASDIQVLRCGPPPMNKAMAAHLEALG----YTSEMLFQ 264 (265)
Q Consensus 200 ~~~~~s~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~g----v~~~~I~~ 264 (265)
+.++++++ +.|.+..|++...+.+. .+. ..+..||+|||+.|++++++.|++.| +++++||.
T Consensus 242 ~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~--~~~~~vyvCGP~~m~~~v~~~l~~~G~~~~v~~~rih~ 313 (316)
T 3jqq_A 242 IHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFN--NYKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVHV 313 (316)
T ss_dssp EEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHH--HTCCEEEEEECSTHHHHHHHHHHC----CHHHHTTEEE
T ss_pred EEEEECCC-cccCCCccchhHHHHHhHHHHHHhhc--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcccccccEEE
Confidence 99999987 45667778877543332 111 14789999999999999999999999 58899985
No 17
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1.7e-35 Score=256.83 Aligned_cols=211 Identities=15% Similarity=0.217 Sum_probs=173.7
Q ss_pred CCCCeEEEEEEEEEEecCC-----EEEEEEECCCCCcccCCCCCeEEEEee-c--------eEeeeeeecCC-----CCc
Q 024591 39 DPENFKEFKLVKRLQLSHN-----VAKFTFELPTPTSVLGLPIGQHISCRK-E--------IVKMIFVGSHS-----DGI 99 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~pGq~v~l~~-~--------~~r~ysis~~~-----~~~ 99 (265)
.|.....++|+++++++++ +.+++|+.+.. +.|+||||+.|++ . .+|+|||++.+ +.+
T Consensus 29 ~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~ 105 (310)
T 3vo2_A 29 KPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE---IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSK 105 (310)
T ss_dssp BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSS
T ss_pred cCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC---CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCC
Confidence 4556679999999999998 99999997653 7799999999987 1 47999977655 468
Q ss_pred EEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeEe-cCCCCceEEEEEeCCChHHHHHHHHHHHhCCC
Q 024591 100 FFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFRY-QPGQVRAFGMTAGGSGITPMFQVTRAILENPN 164 (265)
Q Consensus 100 ~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~~-~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~ 164 (265)
.++|+||.. |.+|+| +++||+|.|.||+|.+.+ +.+..++++||||||||||+++++++++..+.
T Consensus 106 ~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~ 185 (310)
T 3vo2_A 106 TVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEH 185 (310)
T ss_dssp EEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCC
T ss_pred EEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhc
Confidence 999999986 337877 899999999999999654 33456899999999999999999999986532
Q ss_pred C----CcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHh------hhCCCCCCCc
Q 024591 165 D----KTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQ------THCPAPASDI 234 (265)
Q Consensus 165 ~----~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~ 234 (265)
. ..+++|+|++|+.++++|.++|+++.++++++++++++++++.+.|.+..+.++..+.+ ..+. .++.
T Consensus 186 ~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~--~~~~ 263 (310)
T 3vo2_A 186 EDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLK--KDNT 263 (310)
T ss_dssp TTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHT--STTE
T ss_pred ccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcc--cCCc
Confidence 2 37899999999999999999999999998845999999999877777777776643221 1122 3578
Q ss_pred EEEEeCCHHHHHHHHHHHHH
Q 024591 235 QVLRCGPPPMNKAMAAHLEA 254 (265)
Q Consensus 235 ~v~vCGp~~~~~~~~~~l~~ 254 (265)
.||+|||+.|++++++.|.+
T Consensus 264 ~vyvCGp~~M~~~v~~~L~~ 283 (310)
T 3vo2_A 264 YVYMCGLKGMEKGIDDIMLN 283 (310)
T ss_dssp EEEEEESTTHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 18
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1e-35 Score=258.27 Aligned_cols=213 Identities=16% Similarity=0.205 Sum_probs=169.6
Q ss_pred CCCCeEEEEEEEEEEec-----CCEEEEEEECCCCCcccCCCCCeEEEEee-c----------eEeeeeeecCCC-----
Q 024591 39 DPENFKEFKLVKRLQLS-----HNVAKFTFELPTPTSVLGLPIGQHISCRK-E----------IVKMIFVGSHSD----- 97 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~----------~~r~ysis~~~~----- 97 (265)
.+..+..++|+++++++ +++.+++|+.+.. +.|+||||+.|++ . .+|+|||++.+.
T Consensus 24 ~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 100 (311)
T 3lo8_A 24 KPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFD 100 (311)
T ss_dssp BTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTS
T ss_pred CCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC---CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCC
Confidence 47778899999999999 9999999998764 7899999999998 2 589999776653
Q ss_pred CcEEEEEEecc---------------CCCCcc---cCCCCEEEEeeeeeeeEecC--CCCceEEEEEeCCChHHHHHHHH
Q 024591 98 GIFFNILYHAT---------------CLLSLL---ISVNSMQSVANIIGRFRYQP--GQVRAFGMTAGGSGITPMFQVTR 157 (265)
Q Consensus 98 ~~~~~~~ik~~---------------~~~S~~---~~~G~~v~i~gp~G~~~~~~--~~~~~~vlia~GtGIap~~~~l~ 157 (265)
.+.++|+||.. |.+|+| +++||+|.|.||+|.|.+.+ +..++++||||||||||++++++
T Consensus 101 ~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~ 180 (311)
T 3lo8_A 101 GRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLR 180 (311)
T ss_dssp SSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHH
T ss_pred CCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHH
Confidence 47899999975 337777 89999999999999976544 25689999999999999999999
Q ss_pred HHHhCCCC----CcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhC----CC
Q 024591 158 AILENPND----KTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHC----PA 229 (265)
Q Consensus 158 ~l~~~~~~----~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~----~~ 229 (265)
+++..+.. ..+++|+|++|+.++++|.++|+++.++++.+++++++++++++.|.+..+++... +.+.. ..
T Consensus 181 ~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~-l~~~~~~~~~~ 259 (311)
T 3lo8_A 181 RMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDK-IEEYSDEIFKL 259 (311)
T ss_dssp HHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHH-HHHTHHHHHHH
T ss_pred HHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHH-HHHHHHHHHHh
Confidence 99865321 36899999999999999999999999998744999999999877777667776632 32211 00
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHHC
Q 024591 230 PASDIQVLRCGPPPMNKAMAAHLEAL 255 (265)
Q Consensus 230 ~~~~~~v~vCGp~~~~~~~~~~l~~~ 255 (265)
...+..||+|||+.|++++++.|.+.
T Consensus 260 ~~~~~~vyvCGp~~m~~~v~~~L~~~ 285 (311)
T 3lo8_A 260 LDGGAHIYFCGLKGMMPGIQDTLKKV 285 (311)
T ss_dssp HHTTCEEEEEECGGGHHHHHHHHHHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHH
Confidence 02478999999999999999888654
No 19
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=3.2e-34 Score=249.95 Aligned_cols=209 Identities=15% Similarity=0.196 Sum_probs=169.8
Q ss_pred CCCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee--ceEeeeeeecCC-CCcEEEEEEeccCC---CC
Q 024591 39 DPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK--EIVKMIFVGSHS-DGIFFNILYHATCL---LS 112 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~--~~~r~ysis~~~-~~~~~~~~ik~~~~---~S 112 (265)
+++.|+.++|++++.+++++.+++|+.+.......|+||||+.|++ ...|+||+++.+ +.+.++|+||.+++ +|
T Consensus 4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g~~R~ySi~s~~~~~~~l~i~Vk~~~~G~g~S 83 (321)
T 2pia_A 4 QEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVKRDSNGRGGS 83 (321)
T ss_dssp TTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTSCEEEEECCSCTTCCSEEEEEEECCTTSCSHH
T ss_pred CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCCCcEEEEeCCCCCCCCeEEEEEEEecCCcchh
Confidence 4678899999999999999999999988753335799999999998 589999966544 56899999998754 57
Q ss_pred cc----cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHH
Q 024591 113 LL----ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELD 188 (265)
Q Consensus 113 ~~----~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~ 188 (265)
+| +++||++.|.||+|.|.++.+ .++++||||||||||+++|++++...+ ..+++|+|++|+.++++|.++|+
T Consensus 84 ~~L~~~l~~Gd~v~v~gP~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~--~~~v~l~~~~r~~~~~~~~~el~ 160 (321)
T 2pia_A 84 ISFIDDTSEGDAVEVSLPRNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTRDPEGTAFFDELT 160 (321)
T ss_dssp HHHHHSCCTTCEEEECCCBCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC--SSEEEEEEEESCGGGCTTHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC--CCcEEEEEEECChhhhHHHHHHh
Confidence 77 899999999999999987654 589999999999999999999998763 27999999999999999999999
Q ss_pred HHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 189 GFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 189 ~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++. . +.++++++ ++++. .|+...+.+.+. ...+..+|+|||+.|++.+++.|++ +++++||.
T Consensus 161 ~l~-~-~~~~~~~~--~~~~~-----~g~~~~~~ll~~---~~~~~~vyvCGP~~m~~~v~~~l~~--~~~~~i~~ 222 (321)
T 2pia_A 161 SDE-W-RSDVKIHH--DHGDP-----TKAFDFWSVFEK---SKPAQHVYCCGPQALMDTVRDMTGH--WPSGTVHF 222 (321)
T ss_dssp STT-T-TTTEEEEE--CTTCT-----TSCCCHHHHHSS---CCTTEEEEEESCHHHHHHHHHHTTT--SCTTCEEE
T ss_pred cCc-c-CCeEEEEE--CCCcc-----cCccCHHHHhcc---cCCCCEEEEECCHHHHHHHHHHHHh--CCHhhEEE
Confidence 885 2 23377653 33221 245543333222 2357899999999999999999987 89999985
No 20
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=7.2e-34 Score=246.98 Aligned_cols=211 Identities=14% Similarity=0.188 Sum_probs=171.9
Q ss_pred CCCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee-c--------eEeeeeeecCCC-----Cc
Q 024591 39 DPENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK-E--------IVKMIFVGSHSD-----GI 99 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~--------~~r~ysis~~~~-----~~ 99 (265)
.+..+..++|++++.+++ ++.+++|+.+.. +.|+||||+.|.+ . .+|+||+++.+. .+
T Consensus 33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~ 109 (314)
T 1fnb_A 33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAK 109 (314)
T ss_dssp BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSC
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC---CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCC
Confidence 355667899999999998 899999998764 7799999999987 2 479999766543 58
Q ss_pred EEEEEEecc-----------CCCCcc---cCCCCEEEEeeeeeeeE-ecCCCCceEEEEEeCCChHHHHHHHHHHHhCCC
Q 024591 100 FFNILYHAT-----------CLLSLL---ISVNSMQSVANIIGRFR-YQPGQVRAFGMTAGGSGITPMFQVTRAILENPN 164 (265)
Q Consensus 100 ~~~~~ik~~-----------~~~S~~---~~~G~~v~i~gp~G~~~-~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~ 164 (265)
.++|+|+.. |.+|+| +++||.|.|.||+|.|. ++.+..+++|||||||||||+++++++++..+.
T Consensus 110 ~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~ 189 (314)
T 1fnb_A 110 SVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKH 189 (314)
T ss_dssp EEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCB
T ss_pred EEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhcc
Confidence 899999974 337887 89999999999999964 343345899999999999999999999986531
Q ss_pred ----CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhh-------hCCCCCCC
Q 024591 165 ----DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQT-------HCPAPASD 233 (265)
Q Consensus 165 ----~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~ 233 (265)
...+++|+|++|+.+|++|.++|+++.++++++++++++++++++.|.+..|+++.. +.+ .+. ..+
T Consensus 190 ~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~-l~~~~~~~~~~~~--~~~ 266 (314)
T 1fnb_A 190 DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTR-MAQYAVELWEMLK--KDN 266 (314)
T ss_dssp TTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHH-HHTTHHHHHHHTT--STT
T ss_pred ccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHH-HHHhHHHHHHHHh--cCC
Confidence 136899999999999999999999999988744999999998877777767776643 332 121 247
Q ss_pred cEEEEeCCHHHHHHHHHHHHHC
Q 024591 234 IQVLRCGPPPMNKAMAAHLEAL 255 (265)
Q Consensus 234 ~~v~vCGp~~~~~~~~~~l~~~ 255 (265)
..+|+|||+.|+++++..|.+.
T Consensus 267 ~~vyvCGp~~m~~~v~~~L~~~ 288 (314)
T 1fnb_A 267 TYVYMCGLKGMEKGIDDIMVSL 288 (314)
T ss_dssp EEEEEEECTTHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHH
Confidence 8899999999999999888664
No 21
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=4.4e-34 Score=255.91 Aligned_cols=213 Identities=19% Similarity=0.270 Sum_probs=173.6
Q ss_pred CeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee-c--------eEeeeeeecCCC-----CcEEE
Q 024591 42 NFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK-E--------IVKMIFVGSHSD-----GIFFN 102 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~--------~~r~ysis~~~~-----~~~~~ 102 (265)
.+..++|++++.+++ ++.+++|+.+.. .+.|+||||+.|.+ . .+|+||+++.+. .+.++
T Consensus 121 ~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~ 198 (402)
T 2b5o_A 121 TPFLGKCIENYELVDEGGSGTVRHVTFDISEG--DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVS 198 (402)
T ss_dssp SCEEEEEEEEEECSCTTCCSCEEEEEEECTTS--CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEE
T ss_pred CCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC--CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEE
Confidence 467899999999999 999999998764 37899999999986 1 479999766553 68899
Q ss_pred EEEecc------------CCCCcc---cCCC-CEEEEeeeeeeeE-ecCCCCceEEEEEeCCChHHHHHHHHHHHhCCC-
Q 024591 103 ILYHAT------------CLLSLL---ISVN-SMQSVANIIGRFR-YQPGQVRAFGMTAGGSGITPMFQVTRAILENPN- 164 (265)
Q Consensus 103 ~~ik~~------------~~~S~~---~~~G-~~v~i~gp~G~~~-~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~- 164 (265)
|+||.. |.+|.| +++| |.|.|.||+|.|. ++.+..+++|||||||||||+++++++++..+.
T Consensus 199 l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~ 278 (402)
T 2b5o_A 199 LCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHE 278 (402)
T ss_dssp EEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCS
T ss_pred EEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccc
Confidence 999982 337777 8999 9999999999964 343445899999999999999999999987632
Q ss_pred ---CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhh-------hCCCCCCCc
Q 024591 165 ---DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQT-------HCPAPASDI 234 (265)
Q Consensus 165 ---~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~ 234 (265)
...+++|+|++|+.+|++|.++|+++.++++++++++++++++.+.|.+..++++.. +.+ .+. ..+.
T Consensus 279 ~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~-l~~~~~~l~~~l~--~~~~ 355 (402)
T 2b5o_A 279 DYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSR-VSEYADELFEMIQ--KPNT 355 (402)
T ss_dssp SCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHH-HHHTHHHHHHHHT--STTE
T ss_pred cccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHH-HHHhHHHHHHHhc--cCCc
Confidence 137899999999999999999999999988844999999998876776666666532 222 122 2478
Q ss_pred EEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 235 QVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 235 ~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
.+|+|||+.|+++++..|.+.|++.
T Consensus 356 ~vyvCGP~~M~~~v~~~L~~~g~~~ 380 (402)
T 2b5o_A 356 HVYMCGLKGMQPPIDETFTAEAEKR 380 (402)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999998776554
No 22
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=1.7e-33 Score=243.53 Aligned_cols=217 Identities=24% Similarity=0.334 Sum_probs=169.8
Q ss_pred CCCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee-c--------eEeeeeeecCC-----CCc
Q 024591 39 DPENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK-E--------IVKMIFVGSHS-----DGI 99 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~-~--------~~r~ysis~~~-----~~~ 99 (265)
.+.....++|++++.+++ ++.+++|+.+.. .+.|+||||+.|.+ . .+|+||+++.+ +.+
T Consensus 17 ~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~ 94 (304)
T 2bmw_A 17 RPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG--NLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK 94 (304)
T ss_dssp BTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS--CCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC--ccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCC
Confidence 345567899999999999 899999998764 26899999999987 1 46999976654 368
Q ss_pred EEEEEEecc------------CCCCcc---cCCCCEEEEeeeeeeeE-ecCCCCceEEEEEeCCChHHHHHHHHHHHhCC
Q 024591 100 FFNILYHAT------------CLLSLL---ISVNSMQSVANIIGRFR-YQPGQVRAFGMTAGGSGITPMFQVTRAILENP 163 (265)
Q Consensus 100 ~~~~~ik~~------------~~~S~~---~~~G~~v~i~gp~G~~~-~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~ 163 (265)
.++|+|+.. |.+|+| +++||+|.|.||+|.+. ++.+..+++|||||||||||+++++++++...
T Consensus 95 ~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 174 (304)
T 2bmw_A 95 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDA 174 (304)
T ss_dssp EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHH
T ss_pred EEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence 899999972 337777 89999999999999964 34334579999999999999999999987542
Q ss_pred C--------CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHH------HhhhCCC
Q 024591 164 N--------DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEM------IQTHCPA 229 (265)
Q Consensus 164 ~--------~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~------l~~~~~~ 229 (265)
. ...+++|+|++|+.+|++|.++|+++.++++.+++++++++++.+.|.+..+.+...+ +.+.+.
T Consensus 175 ~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~- 253 (304)
T 2bmw_A 175 ERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIK- 253 (304)
T ss_dssp HHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHT-
T ss_pred hhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhh-
Confidence 0 1368999999999999999999999999887449999999987666655444444221 222222
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHH----HHCCCCC
Q 024591 230 PASDIQVLRCGPPPMNKAMAAHL----EALGYTS 259 (265)
Q Consensus 230 ~~~~~~v~vCGp~~~~~~~~~~l----~~~gv~~ 259 (265)
..+..||+|||+.|+++++..| .+.|++.
T Consensus 254 -~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~ 286 (304)
T 2bmw_A 254 -NQKTHTYICGPPPMEEGIDAALSAAAAKEGVTW 286 (304)
T ss_dssp -STTEEEEEEECTTHHHHHHHHHHHHHHTTTCCH
T ss_pred -cCCcEEEEECCHHHHHHHHHHHHHHHHHcCccH
Confidence 2467899999999999997777 4557654
No 23
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=9.9e-34 Score=240.06 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=163.4
Q ss_pred EEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee-----ceEeeeeeec-CCCCcEEEEEEec--cCCCCcc-
Q 024591 44 KEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK-----EIVKMIFVGS-HSDGIFFNILYHA--TCLLSLL- 114 (265)
Q Consensus 44 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~-----~~~r~ysis~-~~~~~~~~~~ik~--~~~~S~~- 114 (265)
..++|++++++++++.+++|+.+.. ...++||||+.|.+ ...|+||+++ +.+.+.++|+||. .|.+|+|
T Consensus 6 ~~~~V~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l 83 (262)
T 1ep3_B 6 EMMTVVSQREVAYNIFEMVLKGTLV--DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKL 83 (262)
T ss_dssp EEEEEEEEEEEETTEEEEEEESGGG--GGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHH
T ss_pred cceEEEEEEEecCCEEEEEEEcCcc--cccCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHH
Confidence 3799999999999999999997763 46799999999987 4789999554 4467899999999 5558888
Q ss_pred --cCCCCEEEEeeeeee-eEecCC-CCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHH
Q 024591 115 --ISVNSMQSVANIIGR-FRYQPG-QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGF 190 (265)
Q Consensus 115 --~~~G~~v~i~gp~G~-~~~~~~-~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l 190 (265)
+++||++.+.||+|+ |.++.+ ..++++||||||||||++++++++...+ .+++|+|++|+.+|+++.++|+++
T Consensus 84 ~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r~~~~~~~~~el~~l 160 (262)
T 1ep3_B 84 SKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKILENEFSNL 160 (262)
T ss_dssp HTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCCHHHHHTS
T ss_pred hcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhhHHHHhhh
Confidence 899999999999999 887654 3689999999999999999999998753 699999999999999999999876
Q ss_pred HHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 191 AAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 191 ~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
... ++++. ++ +.|.+..|++++ .+++.++ +...+|+|||+.|++++++ |+++|++
T Consensus 161 ~~~-----~~~~~-~~--~~~~~~~g~v~~-~l~~~~~---~~~~vyvCGp~~m~~~v~~-l~~~gv~ 215 (262)
T 1ep3_B 161 KNV-----TLKIA-TD--DGSYGTKGHVGM-LMNEIDF---EVDALYTCGAPAMLKAVAK-KYDQLER 215 (262)
T ss_dssp TTE-----EEEEE-ET--TCSSSEESCHHH-HHHHCCS---CCSEEEEESCHHHHHHHHH-HTTTCSS
T ss_pred ccC-----cEEEE-EC--CCCCcceeehHH-HHHhhcc---CCCEEEEECCHHHHHHHHH-HHhCCCC
Confidence 532 23332 22 335566788885 6666543 2578999999999999999 9999998
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=3.7e-33 Score=242.46 Aligned_cols=217 Identities=16% Similarity=0.259 Sum_probs=171.2
Q ss_pred CCCCeEEEEEEEEEEecCC--------------EEEEEEECCCCCcccCCCCCeEEEEee-c---------------eEe
Q 024591 39 DPENFKEFKLVKRLQLSHN--------------VAKFTFELPTPTSVLGLPIGQHISCRK-E---------------IVK 88 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~pGq~v~l~~-~---------------~~r 88 (265)
.+.....++|++++.++++ +.+++|+.+.. .+.|+||||+.|.+ . .+|
T Consensus 17 ~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R 94 (314)
T 2rc5_A 17 KKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS--AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVR 94 (314)
T ss_dssp BTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT--TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCE
T ss_pred CCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC--cCcccCCCEEEEECCCCccccCccchhhcCCCce
Confidence 3455678999999999998 99999998764 36899999999987 2 459
Q ss_pred eeeeecCC-----CCcEEEEEEecc-----------CC-CCcc---cCCCCEEEEeeeeeeeEecC--CCCceEEEEEeC
Q 024591 89 MIFVGSHS-----DGIFFNILYHAT-----------CL-LSLL---ISVNSMQSVANIIGRFRYQP--GQVRAFGMTAGG 146 (265)
Q Consensus 89 ~ysis~~~-----~~~~~~~~ik~~-----------~~-~S~~---~~~G~~v~i~gp~G~~~~~~--~~~~~~vlia~G 146 (265)
+||+++.+ +.+.++|+|+.. .+ +|+| +++||+|.|.||+|.|...+ +..+++||||||
T Consensus 95 ~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagG 174 (314)
T 2rc5_A 95 LYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATG 174 (314)
T ss_dssp EEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSSCBCSCEEEEEEG
T ss_pred eeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCCCCCCCEEEEECC
Confidence 99976654 368899999985 23 6777 89999999999999965433 245799999999
Q ss_pred CChHHHHHHHHHHHhCCC--CCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCCC-CCCcccCCCHHH-
Q 024591 147 SGITPMFQVTRAILENPN--DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPES-WNGGVGFVSKEM- 222 (265)
Q Consensus 147 tGIap~~~~l~~l~~~~~--~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~-~~~~~g~~~~~~- 222 (265)
|||||++++++++...+. ...+++|+|++|+.+|++|.++|+++.+++++ ++++++++++.+. |.+..|+++..+
T Consensus 175 tGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~g~~~~v~~~l~ 253 (314)
T 2rc5_A 175 TGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKN-FKLITAISREEKNSFDGGRMYISHRVR 253 (314)
T ss_dssp GGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSS-EEEEEEETTTCBCTTTSSBCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCc-EEEEEEECCCCCcccCCCceehhHHHH
Confidence 999999999999986531 23689999999999999999999999887776 9999999887544 355566655322
Q ss_pred -----HhhhCCCCCCCcEEEEe-CCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 223 -----IQTHCPAPASDIQVLRC-GPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 223 -----l~~~~~~~~~~~~v~vC-Gp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
+.+.+. ..+. +|+| ||+.|+++++..|.+.|+ ++||
T Consensus 254 ~~~~~l~~~~~--~~~~-~yvCGGp~~m~~~v~~~L~~~g~--~~i~ 295 (314)
T 2rc5_A 254 EQAEAVKKILN--GGGR-FYICGGPKGMEKGVIEEIQKISG--NTGT 295 (314)
T ss_dssp HTHHHHHHHHH--HTCE-EEEEESSTTTHHHHHHHHHHHHT--CCSC
T ss_pred HhHHHHHHHhh--cCCe-EEEeCCcHHHHHHHHHHHHHHHh--ccch
Confidence 111121 1233 4999 999999999999999887 5554
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.98 E-value=1.5e-31 Score=225.33 Aligned_cols=206 Identities=10% Similarity=0.008 Sum_probs=158.2
Q ss_pred CCCeEEEEEEEEEEecCCEEEEEEECCCCCcccCCCCCeEEEEee------ceEeeeeeecCCCCcEEEEEEeccC---C
Q 024591 40 PENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRK------EIVKMIFVGSHSDGIFFNILYHATC---L 110 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pGq~v~l~~------~~~r~ysis~~~~~~~~~~~ik~~~---~ 110 (265)
+..|+.++|++++++++++.+++|+.++......++|||||.|.+ ...|+||+++.+. +.++|.++.++ .
T Consensus 5 ~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~-~~~~i~~~~~~~~G~ 83 (252)
T 2gpj_A 5 KPAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD-DEIDVDFVLHDTDGP 83 (252)
T ss_dssp -CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET-TEEEEEEECCSSCCH
T ss_pred CCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC-CEEEEEEEEeCCCCc
Confidence 456889999999999999999999987653333589999999988 3789999665433 68888887763 3
Q ss_pred CCcc---cCCCCEEEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHH
Q 024591 111 LSLL---ISVNSMQSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEEL 187 (265)
Q Consensus 111 ~S~~---~~~G~~v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l 187 (265)
+|+| +++||+|.|.||.|.|.++.. .++++||||||||+|+++|++++... .++++++.+++.+++...+
T Consensus 84 ~S~~l~~l~~Gd~l~v~gP~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~~~~d~~~l~-- 156 (252)
T 2gpj_A 84 ASSWAKTAQVGELIQIGGPGLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVLSEADIQPLV-- 156 (252)
T ss_dssp HHHHHHHCCTTCEEEEEEEECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEESSGGGCCCCC--
T ss_pred HHHHHhhCCCCCEEEEecCCCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEECCHHHhhccc--
Confidence 8888 999999999999999987643 47899999999999999999998432 5888999999988775321
Q ss_pred HHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHH-HCCCCCCCEEe
Q 024591 188 DGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLE-ALGYTSEMLFQ 264 (265)
Q Consensus 188 ~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~-~~gv~~~~I~~ 264 (265)
..++ ++++++.++... + .|+...+.+.+.... ..+..+|+|||+.|++++++.|. ++|+++++||.
T Consensus 157 -----~~~~-~~v~~~~~~~~~-~---~g~~~~~~l~~~~~~-~~~~~vy~CGP~~m~~av~~~l~~~~G~~~~~i~~ 223 (252)
T 2gpj_A 157 -----HPEH-VELHWVINPEAD-P---EGRPLVERIAQLPWL-AGEPAVWIACEFNSMRALRRHFKQAHALPKSHFYT 223 (252)
T ss_dssp -----CCTE-EEEEEEECSSCC-T---TCHHHHHHHTTSCCC-SSCEEEEEEEEHHHHHHHHHHHHHHCCCCGGGEEE
T ss_pred -----CCCC-cEEEEEeCCCCC-c---ccHHHHHHHHhccCC-CCCcEEEEEcCHHHHHHHHHHHHHhcCCCHHHeEE
Confidence 2334 788777655322 1 122222334443111 24678999999999999999998 89999999984
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.94 E-value=1.5e-28 Score=217.76 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=141.0
Q ss_pred CCCCCeEEEEee-ceEeeeeeecCCC--CcEEEEEEecc----------CCCCcc----cCCCCEEEEeee-eeeeEecC
Q 024591 73 GLPIGQHISCRK-EIVKMIFVGSHSD--GIFFNILYHAT----------CLLSLL----ISVNSMQSVANI-IGRFRYQP 134 (265)
Q Consensus 73 ~~~pGq~v~l~~-~~~r~ysis~~~~--~~~~~~~ik~~----------~~~S~~----~~~G~~v~i~gp-~G~~~~~~ 134 (265)
.+.||||+.+.. ...|+|||++.+. .+.++|+|+.. |.+|.| +++|++|.+.+| .|.|.++.
T Consensus 145 ~~~~Gq~v~l~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~ 224 (374)
T 1ddg_A 145 QLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA 224 (374)
T ss_dssp CCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCS
T ss_pred CCCHHHHHhhccCCCCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCC
Confidence 689999999877 7899999776664 68999999986 347887 789999999985 55798876
Q ss_pred CCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCC
Q 024591 135 GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNG 213 (265)
Q Consensus 135 ~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~ 213 (265)
+...++||||+||||||++++++++...+ ...+++|+|++|+. +|++|.+||+++.++.+. +++..++|++......
T Consensus 225 ~~~~piimIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Srd~~~k~y 302 (374)
T 1ddg_A 225 NPETPVIMIGPGTGIAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL-TRIDLAWSRDQKEKVY 302 (374)
T ss_dssp STTSCEEEECCGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSC-CEEEEEETTSSSSCCC
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCC-cEEEEEEecCCCCCcc
Confidence 56689999999999999999999988753 34789999999998 799999999999988766 7888899886543333
Q ss_pred cccCCCHH--HHhhhCCCCCCCcEEEEeC-CHHHHHHHHHHHHH
Q 024591 214 GVGFVSKE--MIQTHCPAPASDIQVLRCG-PPPMNKAMAAHLEA 254 (265)
Q Consensus 214 ~~g~~~~~--~l~~~~~~~~~~~~v~vCG-p~~~~~~~~~~l~~ 254 (265)
.++++.+. .+.+++. ++..+|+|| |+.|++++++.|.+
T Consensus 303 Vq~~l~~~~~~l~~~l~---~~~~vYvCG~p~~M~~~V~~~L~~ 343 (374)
T 1ddg_A 303 VQDKLREQGAELWRWIN---DGAHIYVCGDANRMAKDVEQALLE 343 (374)
T ss_dssp HHHHHHHTHHHHHHHHH---TTCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHh---CCcEEEEECCCHHHHHHHHHHHHH
Confidence 34444321 1222332 377899999 99999999888754
No 27
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.92 E-value=2.3e-25 Score=200.96 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=126.8
Q ss_pred eEeeeeeecCCC--CcEEEEEEecc-------------CCCCcc---cCCCCEEEEee-eeeeeEecCCCCceEEEEEeC
Q 024591 86 IVKMIFVGSHSD--GIFFNILYHAT-------------CLLSLL---ISVNSMQSVAN-IIGRFRYQPGQVRAFGMTAGG 146 (265)
Q Consensus 86 ~~r~ysis~~~~--~~~~~~~ik~~-------------~~~S~~---~~~G~~v~i~g-p~G~~~~~~~~~~~~vlia~G 146 (265)
..|+|||++.+. .+.++++|+.. |.+|.| +++|+.|.|.+ |.|.|.++.+...++||||||
T Consensus 209 ~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagG 288 (435)
T 1f20_A 209 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG 288 (435)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCG
T ss_pred CCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECC
Confidence 569999777664 57899999854 337777 89999999999 566898876656899999999
Q ss_pred CChHHHHHHHHHHHhC----CCCCcEEEEEEeeCCCc-ccccHHHHHHHHHhCCCCeEEEEEecCCCCCCC-CcccCCCH
Q 024591 147 SGITPMFQVTRAILEN----PNDKTKVHLIYANVTYE-DILLKEELDGFAAKYPDQFTIYYVLNQPPESWN-GGVGFVSK 220 (265)
Q Consensus 147 tGIap~~~~l~~l~~~----~~~~~~i~L~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~-~~~g~~~~ 220 (265)
|||||++++++++... +....+++|+|++|+.+ |++|.+||+++.+.++. +++..++|++...+. ..++++.+
T Consensus 289 tGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Sr~~~~~k~yVq~~l~~ 367 (435)
T 1f20_A 289 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTAYSREPDRPKKYVQDVLQE 367 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSE-EEEEEEESSCTTSCCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCc-cEEEEEECCCCCCCCcchhhHHHh
Confidence 9999999999988752 12357899999999997 78999999999988765 788889998754321 12222221
Q ss_pred H---HHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCC
Q 024591 221 E---MIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALG 256 (265)
Q Consensus 221 ~---~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~g 256 (265)
. .+-+.+. ..+..||+|||+.|++++...|.+.+
T Consensus 368 ~l~~~~~~~l~--~~~~~vYvCGp~~M~~~V~~~L~~i~ 404 (435)
T 1f20_A 368 QLAESVYRALK--EQGGHIYVCGDVTMAADVLKAIQRIM 404 (435)
T ss_dssp HSHHHHHHHHH--TSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh--cCCcEEEEeCChhHHHHHHHHHHHHH
Confidence 1 1111111 24678999999999999999886654
No 28
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.91 E-value=6.1e-25 Score=208.16 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=127.9
Q ss_pred eEeeeeeecCCC--CcEEEEEEecc-------------CCCCcc---cCCCCEEEEee-eeeeeEecCCCCceEEEEEeC
Q 024591 86 IVKMIFVGSHSD--GIFFNILYHAT-------------CLLSLL---ISVNSMQSVAN-IIGRFRYQPGQVRAFGMTAGG 146 (265)
Q Consensus 86 ~~r~ysis~~~~--~~~~~~~ik~~-------------~~~S~~---~~~G~~v~i~g-p~G~~~~~~~~~~~~vlia~G 146 (265)
..|+|||++.+. .+.++++|+.. |.+|.| +++|+.|.|.+ |.|.|.++.+...++||||||
T Consensus 430 ~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagG 509 (688)
T 1tll_A 430 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPG 509 (688)
T ss_dssp CCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEG
T ss_pred ceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcC
Confidence 479999877664 57899998864 337777 89999999999 566898876656899999999
Q ss_pred CChHHHHHHHHHHHhC----CCCCcEEEEEEeeCCCc-ccccHHHHHHHHHhCCCCeEEEEEecCCCCCCC-CcccCCCH
Q 024591 147 SGITPMFQVTRAILEN----PNDKTKVHLIYANVTYE-DILLKEELDGFAAKYPDQFTIYYVLNQPPESWN-GGVGFVSK 220 (265)
Q Consensus 147 tGIap~~~~l~~l~~~----~~~~~~i~L~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~-~~~g~~~~ 220 (265)
|||||++++++++... +....+++|+|++|+.+ |++|.+||+++.+.++. ++++.+++++...+. ..++++.+
T Consensus 510 tGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~-~~l~~a~Sr~~~~~k~yVq~~l~~ 588 (688)
T 1tll_A 510 TGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF-RELYTAYSREPDRPKKYVQDVLQE 588 (688)
T ss_dssp GGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSE-EEEEEEESSCTTSCCCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCc-eEEEEEECCCCCCCccchhhhhHH
Confidence 9999999999988753 22457899999999997 78999999999988765 789899998754332 22333221
Q ss_pred H---HHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHC
Q 024591 221 E---MIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEAL 255 (265)
Q Consensus 221 ~---~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~ 255 (265)
. .+-..+. ..+..||+|||+.|++++...|.+.
T Consensus 589 ~l~~~l~~~l~--~~~~~vYvCGp~~M~~~V~~~L~~i 624 (688)
T 1tll_A 589 QLAESVYRALK--EQGGHIYVCGDVTMAADVLKAIQRI 624 (688)
T ss_dssp SSHHHHHHHHH--TSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 1 1111111 2467999999999999999999775
No 29
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.91 E-value=1e-24 Score=194.18 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=130.3
Q ss_pred CCCCeEEEEee-ceEeeeeeecCCC--CcEEEEEEecc------------CCCCcc---cCCCCEEE--EeeeeeeeEec
Q 024591 74 LPIGQHISCRK-EIVKMIFVGSHSD--GIFFNILYHAT------------CLLSLL---ISVNSMQS--VANIIGRFRYQ 133 (265)
Q Consensus 74 ~~pGq~v~l~~-~~~r~ysis~~~~--~~~~~~~ik~~------------~~~S~~---~~~G~~v~--i~gp~G~~~~~ 133 (265)
..++|++.+.- ..+|+|||++.+. .+.++|+|+.. |.+|+| +++||.|. |++|+|.|.++
T Consensus 157 ~p~~~~l~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp 236 (393)
T 4dql_A 157 MKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQSEFTLP 236 (393)
T ss_dssp CCHHHHHHTSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSSCCCCC
T ss_pred CCHHHHHHhCCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCCCcccC
Confidence 44556554422 6889999777664 57899999876 336777 89999998 78999999887
Q ss_pred CCCCceEEEEEeCCChHHHHHHHHHH---HhCCCCCcEEEEEEeeCC-CcccccHHHHHHHHHhCCCCeEEEEEecCCCC
Q 024591 134 PGQVRAFGMTAGGSGITPMFQVTRAI---LENPNDKTKVHLIYANVT-YEDILLKEELDGFAAKYPDQFTIYYVLNQPPE 209 (265)
Q Consensus 134 ~~~~~~~vlia~GtGIap~~~~l~~l---~~~~~~~~~i~L~~~~r~-~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~ 209 (265)
.+...++||||+||||||++++++++ ...+....+++|+|++|+ .+|++|.+|++++.+. +. ++++.++|+++.
T Consensus 237 ~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~-l~l~~a~Sr~~~ 314 (393)
T 4dql_A 237 KDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GI-ITLHTAFSRMPN 314 (393)
T ss_dssp SSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TS-CEEEEEESSCTT
T ss_pred ccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CC-eEEEEEEeCCCC
Confidence 66667999999999999999999984 334334568999999999 5899999999999876 34 899999998543
Q ss_pred CC-CCcccCC--CHHHHhhhCCCCCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 210 SW-NGGVGFV--SKEMIQTHCPAPASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 210 ~~-~~~~g~~--~~~~l~~~~~~~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
.. ...++++ ..+.+.+++ ..+..||+|||. .|.++++.+|.+
T Consensus 315 ~~k~yVq~~l~~~~~~l~~~l---~~~~~vYvCGp~~~M~~~V~~~L~~ 360 (393)
T 4dql_A 315 QPKTYVQHVMEQDGKKLIELL---DQGAHFYICGDGSQMAPAVEATLMK 360 (393)
T ss_dssp SCCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEETTTHHHHHHHHHHH
T ss_pred CCCcchhhHHHhCHHHHHHHH---hCCcEEEEECCchhhHHHHHHHHHH
Confidence 22 2222222 122233333 247899999995 677788888765
No 30
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.90 E-value=2e-24 Score=199.06 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=124.9
Q ss_pred eEeeeeeecCC--CCcEEEEEEecc-------------CCCCcc---c-----------CCCC-------EEEEeeeee-
Q 024591 86 IVKMIFVGSHS--DGIFFNILYHAT-------------CLLSLL---I-----------SVNS-------MQSVANIIG- 128 (265)
Q Consensus 86 ~~r~ysis~~~--~~~~~~~~ik~~-------------~~~S~~---~-----------~~G~-------~v~i~gp~G- 128 (265)
..|+|||++.+ +.+.++|+|+.. |.+|.| + ++|+ .|.|.+|.|
T Consensus 290 ~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~ 369 (539)
T 2qtl_A 290 QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTN 369 (539)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSCC
T ss_pred cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCC
Confidence 57999987766 478999999987 226777 4 8999 999999987
Q ss_pred eeEecCCCCceEEEEEeCCChHHHHHHHHHHHh---CC--CCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEE
Q 024591 129 RFRYQPGQVRAFGMTAGGSGITPMFQVTRAILE---NP--NDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYY 202 (265)
Q Consensus 129 ~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~---~~--~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~ 202 (265)
.|.++.+...++||||+|||||||+++++++.. .+ ....+++|+|++|+. +|++|.+||+++.+.++. +++..
T Consensus 370 ~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~-~~l~~ 448 (539)
T 2qtl_A 370 SFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL-THLKV 448 (539)
T ss_dssp CCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS-CEEEE
T ss_pred CccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC-cEEEE
Confidence 688876656899999999999999999998542 11 134789999999999 799999999999988766 79999
Q ss_pred EecCCCC--CCCCcccCCCHHHHhhhCCCC-----CCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 203 VLNQPPE--SWNGGVGFVSKEMIQTHCPAP-----ASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 203 ~~s~~~~--~~~~~~g~~~~~~l~~~~~~~-----~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
++|++.. .|.+..++++. .+.+..... ..+..||+|||+ .|++++...|.+
T Consensus 449 afSRd~~~~~~~g~k~yVqd-~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~ 507 (539)
T 2qtl_A 449 SFSRDAPVGEEEAPAKYVQD-NIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQ 507 (539)
T ss_dssp EESSSCC------CCCSHHH-HHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHH
T ss_pred EEccCCCccccCCCccchhH-HHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHH
Confidence 9998654 35556777774 333221110 136789999997 999999888754
No 31
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.90 E-value=1.4e-25 Score=175.73 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=96.1
Q ss_pred cCCCCE-EEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHh
Q 024591 115 ISVNSM-QSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAK 193 (265)
Q Consensus 115 ~~~G~~-v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~ 193 (265)
+++||+ +.++||+|+|.... ..++++||||||||||++++++++.+.+ .+++++ ++|+.+++++.++|+++.++
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r~~~d~~~~~el~~l~~~ 75 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR 75 (158)
T ss_dssp -----------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EECBGGGCCSHHHHHHHSSE
T ss_pred CcCCCEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhc
Confidence 578999 69999999964333 4589999999999999999999998763 589999 99999999999999988643
Q ss_pred CCCCeEEEEEecCC----CCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 194 YPDQFTIYYVLNQP----PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 194 ~~~~~~~~~~~s~~----~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
+.+.++.+++ ++.|.+..|++++ .+.+.+++ .+...+|+|||+.|++++++.|+++|++
T Consensus 76 ----~~~~~v~~~~~~~~~~~~~g~~G~v~~-~l~~~l~~-~~~~~vy~CGP~~mm~~v~~~l~~~Gv~ 138 (158)
T 3lrx_A 76 ----HIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLES-EDWDLVFMVGPVGDQKQVFEVVKEYGVP 138 (158)
T ss_dssp ----EEECCBCCCTTSCHHHHHHHHHHHHHH-HHHHHHHH-SCCSEEEEESCHHHHHHHHHHHGGGTCC
T ss_pred ----eEEEEeeccccccCCCCCCCCcccccH-HHHHhhcc-CCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 5544333332 2235556788874 45554433 2456899999999999999999999998
No 32
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.7e-24 Score=170.92 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=105.7
Q ss_pred EEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCC------CCCcEEEEEEeeCCCcccc-cHHHHHHHHHh
Q 024591 121 QSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENP------NDKTKVHLIYANVTYEDIL-LKEELDGFAAK 193 (265)
Q Consensus 121 v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~------~~~~~i~L~~~~r~~~~~~-~~~~l~~l~~~ 193 (265)
|.|.||+|.|..+....+++|||||||||||+++++++++... ....+++|+|++|+.+++. +.++|+++.+.
T Consensus 1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ 80 (186)
T ss_dssp CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence 3578999998765445689999999999999999999988641 2457999999999999998 99999999876
Q ss_pred C-----CCCeEEEEEecCCCCC---------------CCC-----cccCCCHHH-HhhhCCCC-CCCcEEEEeCCHHHHH
Q 024591 194 Y-----PDQFTIYYVLNQPPES---------------WNG-----GVGFVSKEM-IQTHCPAP-ASDIQVLRCGPPPMNK 246 (265)
Q Consensus 194 ~-----~~~~~~~~~~s~~~~~---------------~~~-----~~g~~~~~~-l~~~~~~~-~~~~~v~vCGp~~~~~ 246 (265)
+ ++++++..+++++... ..+ ..||++.+. ++...... ..+..||+|||+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~ 160 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAE 160 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHH
T ss_pred HhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHH
Confidence 4 5349999888875321 111 237888665 33332211 2467899999999999
Q ss_pred HHHHHHHHCCCC
Q 024591 247 AMAAHLEALGYT 258 (265)
Q Consensus 247 ~~~~~l~~~gv~ 258 (265)
++++.|.+.|+.
T Consensus 161 ~v~~~l~~~g~~ 172 (186)
T 3a1f_A 161 TLSKQSISNSES 172 (186)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHhhcc
Confidence 999999999985
No 33
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.89 E-value=5.3e-23 Score=185.79 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=123.1
Q ss_pred ceEeeeeeecCCC--CcEEEEEEecc-----------CCCCcc---cCCCC------EEEEeeeeeeeEecCCCCceEEE
Q 024591 85 EIVKMIFVGSHSD--GIFFNILYHAT-----------CLLSLL---ISVNS------MQSVANIIGRFRYQPGQVRAFGM 142 (265)
Q Consensus 85 ~~~r~ysis~~~~--~~~~~~~ik~~-----------~~~S~~---~~~G~------~v~i~gp~G~~~~~~~~~~~~vl 142 (265)
...|+|||++.+. .+.++|+|+.. |.+|+| +.+|+ .|.+.+|.|.|.++.+...++||
T Consensus 232 l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piIm 311 (458)
T 3qfs_A 232 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIM 311 (458)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEE
T ss_pred CcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEE
Confidence 5789999777663 58899988643 227777 45543 69999999999887666689999
Q ss_pred EEeCCChHHHHHHHHHHH---hCCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCC
Q 024591 143 TAGGSGITPMFQVTRAIL---ENPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFV 218 (265)
Q Consensus 143 ia~GtGIap~~~~l~~l~---~~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~ 218 (265)
||+|||||||+++++++. +.+....+++|+|++|+. +|++|.+||++|.+++.. +++..++|++... .+++
T Consensus 312 IggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l-~~l~~a~SRd~~~----k~yV 386 (458)
T 3qfs_A 312 VGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLNVAFSREQSH----KVYV 386 (458)
T ss_dssp ECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEEEEETTSSSS----CCCH
T ss_pred EcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCC-CEEEEEEECCCCC----cccH
Confidence 999999999999999853 222234689999999996 799999999999988654 5888889886532 3444
Q ss_pred CHH------HHhhhCCCCCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 219 SKE------MIQTHCPAPASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 219 ~~~------~l~~~~~~~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
+.. .+.+++ ..+..||+|||+ .|+++++..|.+
T Consensus 387 qd~l~~~~~~l~~~l---~~~~~vYvCGp~~~M~~~V~~~L~~ 426 (458)
T 3qfs_A 387 QHLLKQDREHLWKLI---EGGAHIYVCGDARNMARDVQNTFYD 426 (458)
T ss_dssp HHHHHHTHHHHHHHH---HTTCEEEEEEETTTHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHh---cCCCEEEEECCCHHHHHHHHHHHHH
Confidence 422 122222 247899999996 799999988864
No 34
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.89 E-value=3e-24 Score=165.14 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=98.6
Q ss_pred EEEeeeeeeeEecCCCCceEEEEEeCCChHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEE
Q 024591 121 QSVANIIGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTI 200 (265)
Q Consensus 121 v~i~gp~G~~~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~ 200 (265)
+.|.||+|++...+ ..+++++||||+||||++++++++.+.+ .+++++ ++|+.+++++.++|+++.++ +.+
T Consensus 3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~~~el~~l~~~----~~~ 73 (142)
T 3lyu_A 3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILKEELEKAVTR----HIV 73 (142)
T ss_dssp ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCSHHHHHTTSSE----EEE
T ss_pred eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHHHHHHHHHhh----eEE
Confidence 57899999975443 4589999999999999999999998764 589999 99999999999999987643 555
Q ss_pred EEEecCC----CCCCCCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 201 YYVLNQP----PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 201 ~~~~s~~----~~~~~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
.++.+++ ++.|.+..|++++ .+++.+++ .+...+|+|||+.|++.+.+.+++.|++-
T Consensus 74 ~~~~~~~~~~~~d~~~g~~G~v~~-~l~~~~~~-~~~~~vy~CGP~~Mm~av~~~l~~~~~~~ 134 (142)
T 3lyu_A 74 EPVPLNPNQDFLANMKNVSQRLKE-KVRELLES-EDWDLVFMVGPVGDQKQVFEVVKEYGVPM 134 (142)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH-HHHHHHHS-SCCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred EEeecccccCCCCCCCCCccchhH-HHHHhccc-CCCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence 5454443 2335566788874 56665544 24568999999999999999999999974
No 35
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.87 E-value=1e-22 Score=190.90 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=122.2
Q ss_pred eEeeeeeecCCC--CcEEEEEEecc-----------CCCCcc---cCC-CC-----EEEEeeeeeeeEecCCCCceEEEE
Q 024591 86 IVKMIFVGSHSD--GIFFNILYHAT-----------CLLSLL---ISV-NS-----MQSVANIIGRFRYQPGQVRAFGMT 143 (265)
Q Consensus 86 ~~r~ysis~~~~--~~~~~~~ik~~-----------~~~S~~---~~~-G~-----~v~i~gp~G~~~~~~~~~~~~vli 143 (265)
..|+|||++.+. .+.++|+|+.. |.+|+| +.+ |+ .|.|.+|.|.|.++.+...++|||
T Consensus 393 ~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~~~~~piimI 472 (618)
T 3qe2_A 393 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMV 472 (618)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred ccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCCCCCCCeEEE
Confidence 579999777663 47888887542 337777 555 87 999999999998876666899999
Q ss_pred EeCCChHHHHHHHHHHHh---CCCCCcEEEEEEeeCCC-cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCC
Q 024591 144 AGGSGITPMFQVTRAILE---NPNDKTKVHLIYANVTY-EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVS 219 (265)
Q Consensus 144 a~GtGIap~~~~l~~l~~---~~~~~~~i~L~~~~r~~-~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~ 219 (265)
|+||||||++++++++.. .+....+++|+|++|+. +|++|.+||+++.+.... +++..++|++.......++++.
T Consensus 473 g~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l-~~l~~a~Srd~~~k~yVqd~l~ 551 (618)
T 3qe2_A 473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLNVAFSREQSHKVYVQHLLK 551 (618)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEEEEETTSSSSCCCHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCC-cEEEEEEcCCCCCCCcHHHHHH
Confidence 999999999999999763 22234789999999999 599999999999988543 4898999987543222222222
Q ss_pred H--HHHhhhCCCCCCCcEEEEeCCH-HHHHHHHHHHHH
Q 024591 220 K--EMIQTHCPAPASDIQVLRCGPP-PMNKAMAAHLEA 254 (265)
Q Consensus 220 ~--~~l~~~~~~~~~~~~v~vCGp~-~~~~~~~~~l~~ 254 (265)
+ +.+.+++ ..+..||+|||+ .|+++++..|.+
T Consensus 552 ~~~~~l~~~l---~~~a~vYvCGp~~~M~~~V~~~L~~ 586 (618)
T 3qe2_A 552 QDREHLWKLI---EGGAHIYVCGDARNMARDVQNTFYD 586 (618)
T ss_dssp HTHHHHHHHH---HHTCEEEEEEETTTHHHHHHHHHHH
T ss_pred HhHHHHHHHH---hCCcEEEEECCchHHHHHHHHHHHH
Confidence 1 1122222 247799999996 899999988754
No 36
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.87 E-value=1.6e-23 Score=198.43 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=128.0
Q ss_pred CCCeEEEEee--ceEeeeeeecCCC--CcEEEEEEecc--------------CCCCcc---cCC------------CCEE
Q 024591 75 PIGQHISCRK--EIVKMIFVGSHSD--GIFFNILYHAT--------------CLLSLL---ISV------------NSMQ 121 (265)
Q Consensus 75 ~pGq~v~l~~--~~~r~ysis~~~~--~~~~~~~ik~~--------------~~~S~~---~~~------------G~~v 121 (265)
.|+|++...+ ..+|+|||++.+. .+.++|+|+.. |.+|.| +++ |+.+
T Consensus 415 ~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v 494 (682)
T 2bpo_A 415 VPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHY 494 (682)
T ss_dssp SCHHHHHHHSCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCC
T ss_pred CCHHHHHHhCcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccce
Confidence 4677665555 6889999777664 47888887542 226777 455 9999
Q ss_pred EEeeeeeee--------------EecCCCCceEEEEEeCCChHHHHHHHHHHHhCC---------CCCcEEEEEEeeCCC
Q 024591 122 SVANIIGRF--------------RYQPGQVRAFGMTAGGSGITPMFQVTRAILENP---------NDKTKVHLIYANVTY 178 (265)
Q Consensus 122 ~i~gp~G~~--------------~~~~~~~~~~vlia~GtGIap~~~~l~~l~~~~---------~~~~~i~L~~~~r~~ 178 (265)
.|.||+|.| .++.+...++||||+|||||||+++++++...+ ....+++|+|++|+.
T Consensus 495 ~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~ 574 (682)
T 2bpo_A 495 DLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNT 574 (682)
T ss_dssp CSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSS
T ss_pred eeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCCh
Confidence 999999986 223333578999999999999999999987531 124689999999999
Q ss_pred cccccHHHHHHHHHhCCCCeEEEEEecCCCCCCCCcccCCCHHH------HhhhCCCCCCCcEEEEeCC-HHHHHHHHHH
Q 024591 179 EDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEM------IQTHCPAPASDIQVLRCGP-PPMNKAMAAH 251 (265)
Q Consensus 179 ~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~~v~vCGp-~~~~~~~~~~ 251 (265)
+|++|.+||+++..+.+..+++..++|+++. +..++++..+ +.+++. .+..||+||| +.|++++...
T Consensus 575 ~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l~---~~~~vYvCGpa~~M~~~V~~~ 648 (682)
T 2bpo_A 575 DDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMIN---NGAFIYVCGDAKGMAKGVSTA 648 (682)
T ss_dssp SSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHHT---TTCEEEEEECSTTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHHh---CCcEEEEeCCchHhHHHHHHH
Confidence 9999999999995443223899999998532 2344554322 223332 4789999999 7999999888
Q ss_pred HHH
Q 024591 252 LEA 254 (265)
Q Consensus 252 l~~ 254 (265)
|.+
T Consensus 649 L~~ 651 (682)
T 2bpo_A 649 LVG 651 (682)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 37
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=76.42 E-value=2.8 Score=35.93 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=26.3
Q ss_pred ceEEEEEeCCC--hHHHHHHHHHHHhCCCCCcEEEEEE
Q 024591 138 RAFGMTAGGSG--ITPMFQVTRAILENPNDKTKVHLIY 173 (265)
Q Consensus 138 ~~~vlia~GtG--Iap~~~~l~~l~~~~~~~~~i~L~~ 173 (265)
+++++.||||| |-|.+++++++.+++ -+|+++-
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g---~~V~~vg 37 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG---YAVHWLG 37 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC---CEEEEEE
Confidence 58899999996 889999999998874 4565443
No 38
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=59.49 E-value=21 Score=31.04 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=33.0
Q ss_pred eEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 43 FKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 43 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
.+.++|++.+.+++ ++++++|++++. ..|+||+++-|.-
T Consensus 6 ~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~---~~Y~~GD~l~v~p 49 (393)
T 4dql_A 6 AFSTNVVASKELQQPGSARSTRHLEIELPKE---ASYQEGDHLGVIP 49 (393)
T ss_dssp CEEEEEEEEEECSCTTCSCCEEEEEEECCTT---CCCCTTCEEEECC
T ss_pred cEEEEEEeEEEcCCCCCCceEEEEEEECCCC---CccCCCCEEEEEc
Confidence 35789999999974 699999998753 8899999999876
No 39
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=55.19 E-value=36 Score=29.23 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=33.9
Q ss_pred CCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 40 PENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 40 ~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
......++|++.+.+++ ++++++|+.+.. ...|+||+++-|.-
T Consensus 8 ~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~--~~~y~~GD~l~v~p 55 (374)
T 1ddg_A 8 KDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDS--GLRYQPGDALGVWY 55 (374)
T ss_dssp TTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTS--CCCCCTTCEEEECC
T ss_pred CCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCC--CcccCCCCEEEEEc
Confidence 33445789999999985 489999998654 37899999999875
No 40
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=53.17 E-value=33 Score=31.18 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=34.5
Q ss_pred CCCCeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 39 DPENFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
+....+.++|++.+.+++ ++++++|+.+.. ...|+||+++-|.-
T Consensus 110 ~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~--~l~Y~~GD~l~V~P 158 (539)
T 2qtl_A 110 SADPVFQVPISKAVQLTTNDAIKTTLLVELDISNT--DFSYQPGDAFSVIC 158 (539)
T ss_dssp ---CCEEEEEEEEEECSCTTCSSCEEEEEEECTTS--CCCCCTTCEEEEEC
T ss_pred CCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCC--CcCcCCCCEEEEEe
Confidence 344556789999999984 689999998775 37899999999986
No 41
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=50.89 E-value=50 Score=29.30 Aligned_cols=42 Identities=10% Similarity=0.210 Sum_probs=34.7
Q ss_pred CCeEEEEEEEEEEecC----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 41 ENFKEFKLVKRLQLSH----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 41 ~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
...+.++|++.+.+++ ++++++|+++.. ...|+||+++-|.-
T Consensus 60 ~~p~~a~v~~n~~Lt~~~~r~~~hie~dl~~s--~l~Y~~GD~l~V~p 105 (458)
T 3qfs_A 60 KNPFLAAVTTNRKLNQGTERHLMHLELDISDS--KIRYESGDHVAVYP 105 (458)
T ss_dssp SSCEEEEEEEEEECCSSSSSCEEEEEEECTTS--CCCCCTTCEEEECC
T ss_pred CCCEEEEEEEEEEcCCCCCCCEEEEEEEeCCC--CcccCCCCEEEEEe
Confidence 3456899999999975 699999998764 38899999999876
No 42
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=46.48 E-value=21 Score=31.14 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=27.8
Q ss_pred eEEEEEEEEEEec---CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 43 FKEFKLVKRLQLS---HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 43 ~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
-...+|..+.... ..++.+++.++.+. ..++||+++.+.+
T Consensus 275 ~~~G~V~~I~p~~d~~t~t~~v~i~l~n~~--~~L~pGm~v~v~i 317 (413)
T 3ne5_B 275 TLTIRKWTLLPGVDAATRTLQLRLEVDNAD--EALKPGMNAWLQL 317 (413)
T ss_dssp EEEECCCEECSCCBTTTTEEEEEEEEECTT--CCSCTTCEEEEEE
T ss_pred EEEEEEEEEeCccCCCCcEEEEEEEEECCC--CccCCCCEEEEEE
Confidence 3456666665432 25777888877653 5699999999987
No 43
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=36.11 E-value=1e+02 Score=28.37 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=33.3
Q ss_pred eEEEEEEEEEEecC----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 43 FKEFKLVKRLQLSH----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 43 ~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
.+.++|++.+.+++ ++++++|+++.. ...|+||.++-|.-
T Consensus 222 ~~~a~v~~n~~Lt~~~~~~~~hie~~~~~~--~~~Y~~GD~l~V~p 265 (618)
T 3qe2_A 222 PFLAAVTTNRKLNQGTERHLMHLELDISDS--KIRYESGDHVAVYP 265 (618)
T ss_dssp CEEEEEEEEEECSCCSSSCEEEEEEECTTS--CCCCCTTCEEEECC
T ss_pred cEEEEEEeEEEcCCCCCCcEEEEEEEcCCC--CcccccCCEEEEEc
Confidence 46899999998874 699999998764 37899999999875
No 44
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=34.98 E-value=43 Score=22.10 Aligned_cols=28 Identities=0% Similarity=-0.212 Sum_probs=22.0
Q ss_pred CCCcEEEEEEeccCCCCcccCCCCEEEEeeeeee
Q 024591 96 SDGIFFNILYHATCLLSLLISVNSMQSVANIIGR 129 (265)
Q Consensus 96 ~~~~~~~~~ik~~~~~S~~~~~G~~v~i~gp~G~ 129 (265)
.+.+..++.+|.. +.+||.+++-+|.|.
T Consensus 17 ~~~g~~~ie~rN~------f~~GD~iEi~~P~g~ 44 (89)
T 4he6_A 17 PETGIATVQQRNH------FRPGDEVEFFGPEIE 44 (89)
T ss_dssp TTTTEEEEEESSC------BCTTCEEEEESTTSC
T ss_pred CCCCEEEEEEcCC------cCCCCEEEEEcCCCC
Confidence 3446677777766 899999999999983
No 45
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=34.67 E-value=38 Score=17.39 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.3
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHh
Q 024591 3 MEYLQNLDVQLLVGGAVAVLAIAVGAA 29 (265)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (265)
+|-+|+|+.-+|+.-++-..+|.++-.
T Consensus 2 lep~qilsi~sfilsalhf~awtighl 28 (33)
T 2kix_A 2 LEPFQILSISSFILSALHFIAWTIGHL 28 (33)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988888877643
No 46
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=34.45 E-value=95 Score=27.14 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=32.8
Q ss_pred eEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 43 FKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 43 ~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
...++|++.+.+++ ++++++|+.+... ...|+||+++-|.-
T Consensus 30 ~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~-~~~Y~~GD~l~V~p 75 (435)
T 1f20_A 30 VSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQ-ELQYQPGDHLGVFP 75 (435)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTCG-GGCCCTTCEEEECC
T ss_pred cEEEEEEeEEECCCCCCCceEEEEEEECCCCC-CCcCCCCCEEEEEe
Confidence 35789999999985 5899999876531 37899999999986
No 47
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.44 E-value=20 Score=30.05 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=26.3
Q ss_pred CeEEEEEEEEEEecC---C--EEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 42 NFKEFKLVKRLQLSH---N--VAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~---~--~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
.....+|..+....+ + .+.+++..+.+. ..++||+++.+.+
T Consensus 223 ~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~--~~l~~G~~~~v~i 268 (341)
T 3fpp_A 223 TRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPN--GLLRLDMTAQVHI 268 (341)
T ss_dssp SCBCCCEEEECSSCCBSSSCBCCEEEEEEECSS--SCCCTTCEEEEEE
T ss_pred CEEEEEEEEEecCccccCceEEEEEEEEeCCCc--cccCCCCEEEEEE
Confidence 334677777754432 1 245666666543 4589999999988
No 48
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=32.65 E-value=1e+02 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=27.4
Q ss_pred EEEEEEEEEEec---CCEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 44 KEFKLVKRLQLS---HNVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 44 ~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
...+|..+.... ..++.+++.++.+. ..++||+++.+.+
T Consensus 239 ~~g~v~~i~~~~d~~~~~~~v~~~~~~~~--~~l~~G~~~~v~i 280 (359)
T 3lnn_A 239 QPGKVRYVGQILDADTRTTKVRMVFDNPD--GRLRPGMFAQATF 280 (359)
T ss_dssp EEEEEEECCCCCCTTSCCEEEEEEEECSS--CCCCTTCEEEEEE
T ss_pred EEEEEEEEecccCCCCcEEEEEEEecCCC--CCcCCCCEEEEEE
Confidence 467777766443 24667777766653 4599999999998
No 49
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=31.83 E-value=78 Score=21.19 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=10.0
Q ss_pred cCCCCEEEEeee
Q 024591 115 ISVNSMQSVANI 126 (265)
Q Consensus 115 ~~~G~~v~i~gp 126 (265)
+++||.+.|.|.
T Consensus 64 i~~Gdvv~i~g~ 75 (97)
T 3e0e_A 64 VKKGDIAEVSGY 75 (97)
T ss_dssp CCTTCEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 789999999763
No 50
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=29.18 E-value=1.4e+02 Score=26.98 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=69.5
Q ss_pred ceEEEEEeCCChHHHHHHHHHHHhCCCCC----cEEEEEEeeCCCc--ccccHHHHHHHHHhCCCCeEEEEEecCCCCCC
Q 024591 138 RAFGMTAGGSGITPMFQVTRAILENPNDK----TKVHLIYANVTYE--DILLKEELDGFAAKYPDQFTIYYVLNQPPESW 211 (265)
Q Consensus 138 ~~~vlia~GtGIap~~~~l~~l~~~~~~~----~~i~L~~~~r~~~--~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~ 211 (265)
++++++++|++=-| ++.+..+.....+. ..-+++++..... +.....-+.++.... .++.. .. ...
T Consensus 291 ~~~vii~tgsqGe~-~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g---~~v~~--~~--~~~ 362 (555)
T 3zq4_A 291 NKVTILCTGSQGEP-MAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAG---AEVIH--GP--LND 362 (555)
T ss_dssp GGEEEEECCTTCCT-TSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTT---CEEEC--SS--SSC
T ss_pred CCEEEEeCCCCchH-HHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHHHHHHHHHHHHCC---CEEEe--cC--Ccc
Confidence 57889999987555 55566666553210 1125566665422 111112233444332 44432 11 112
Q ss_pred CCcccCCCHHHHhhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEE
Q 024591 212 NGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLF 263 (265)
Q Consensus 212 ~~~~g~~~~~~l~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~ 263 (265)
....|....+.+..++........+-+-|...+.....+.+++.|+++++|+
T Consensus 363 ~h~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~~~~~a~~~G~~~~~~~ 414 (555)
T 3zq4_A 363 IHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCF 414 (555)
T ss_dssp CCCCSSCCHHHHHHHHHHSCEEEEEEESBCHHHHHHHHHHHHHTTCCGGGBC
T ss_pred eEEeCCCCHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCcccEE
Confidence 3345566666666665544456678889999999999999999999988775
No 51
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=28.80 E-value=39 Score=28.57 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.0
Q ss_pred ceEEEEEeCCChHHHHHHHHHH
Q 024591 138 RAFGMTAGGSGITPMFQVTRAI 159 (265)
Q Consensus 138 ~~~vlia~GtGIap~~~~l~~l 159 (265)
.+++.|+||||.+-++.-+++.
T Consensus 5 ~~IV~igGGtGl~~ll~gLk~~ 26 (326)
T 2q7x_A 5 PXITVIGGGTGSPVILXSLREX 26 (326)
T ss_dssp CEEEEECCCTTHHHHHHHHHHS
T ss_pred CeEEEEcCcccHHHHHHHhccC
Confidence 5899999999999877666543
No 52
>2k5d_A Uncharacterized protein SAG0934; solution structure, primosomal protein, DUF961, construct optimized, structural genomics; NMR {Streptococcus agalactiae serogroup V}
Probab=28.47 E-value=1.4e+02 Score=20.98 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=33.3
Q ss_pred ceEeeeeeecCCCCcEEEEEEeccCCCCcccCCCCEEEEeeeeee
Q 024591 85 EIVKMIFVGSHSDGIFFNILYHATCLLSLLISVNSMQSVANIIGR 129 (265)
Q Consensus 85 ~~~r~ysis~~~~~~~~~~~ik~~~~~S~~~~~G~~v~i~gp~G~ 129 (265)
...|.|.+-|+.+.+.+++.|-..-+... +..+++|.+.+|.-.
T Consensus 41 v~~R~Y~LyS~~Q~~~IeV~IP~~ag~K~-F~y~~~VeLVNP~i~ 84 (116)
T 2k5d_A 41 IKERTYDLKSKGQGRMIQVSIPASVPLKE-FDYNARVELINPIAD 84 (116)
T ss_dssp EEEEEEEEECSSSCCEEEEEEETTSCCCC-CCTTCEEEESSCEEC
T ss_pred EeeEEEEEEecccCCcEEEEeCCcCCccc-cCCCCeEEEECCEEE
Confidence 46889997777777889988876544332 788999999888765
No 53
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=28.09 E-value=43 Score=24.40 Aligned_cols=61 Identities=7% Similarity=-0.128 Sum_probs=35.8
Q ss_pred cCCCCCeEEEEee---ceEeeeeeecCCCCcEEEEEEeccCCCCcc---cCCCCEEEEeeeee-eeEe
Q 024591 72 LGLPIGQHISCRK---EIVKMIFVGSHSDGIFFNILYHATCLLSLL---ISVNSMQSVANIIG-RFRY 132 (265)
Q Consensus 72 ~~~~pGq~v~l~~---~~~r~ysis~~~~~~~~~~~ik~~~~~S~~---~~~G~~v~i~gp~G-~~~~ 132 (265)
.....|..|.+.. ...+.|++-.+.+.+...-.|....-..+. .++||++.+..|.| ...+
T Consensus 55 ~~V~~Gs~V~l~d~~~g~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlGk~vGD~v~v~~P~G~~~~~ 122 (141)
T 2pn0_A 55 TVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRV 122 (141)
T ss_dssp TBCCTTCEEEEEETTTCCEEEEEEECGGGCCSSSCEEETTSTTHHHHTTCBTTCEEEEECTTSSEEEE
T ss_pred CEEEeCcEEEEEECCCCCEEEEEEECHhHcCccCCEEcCCCHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence 3477899999875 466788843322222111122222222222 79999999999999 5443
No 54
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=27.94 E-value=39 Score=24.83 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEeC
Q 024591 241 PPPMNKAMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 241 p~~~~~~~~~~l~~~gv~~~~I~~~ 265 (265)
++..++..++.++..|+++++|..+
T Consensus 125 s~e~~e~F~~~~~~~Gl~~enI~~~ 149 (157)
T 3fiq_A 125 NKAQKQELRKLAEEYNIPNENTQHL 149 (157)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGCEEC
T ss_pred CHHHHHHHHHHHHHcCCCHHHEEeC
Confidence 3677888999999999999999753
No 55
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=27.11 E-value=1.2e+02 Score=20.72 Aligned_cols=13 Identities=0% Similarity=0.118 Sum_probs=11.4
Q ss_pred cCCCCEEEEeeee
Q 024591 115 ISVNSMQSVANII 127 (265)
Q Consensus 115 ~~~G~~v~i~gp~ 127 (265)
+++|+.+.++|-.
T Consensus 71 l~~G~vv~i~g~~ 83 (115)
T 2k50_A 71 FREGDVIRIKDVN 83 (115)
T ss_dssp CCTTSEEEEEEEE
T ss_pred CCCCCEEEEEeeE
Confidence 7899999999866
No 56
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=26.09 E-value=38 Score=28.84 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=18.3
Q ss_pred CceEEEEEeCCChHHHHHHHHHH
Q 024591 137 VRAFGMTAGGSGITPMFQVTRAI 159 (265)
Q Consensus 137 ~~~~vlia~GtGIap~~~~l~~l 159 (265)
..+++.|+||||.+-++.-+++.
T Consensus 10 ~~kIVvigGGtGl~~ll~gLk~~ 32 (341)
T 2p0y_A 10 RPKIVVIGGGTGLPVVLNGLRKQ 32 (341)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHS
T ss_pred CCeEEEECCcccHHHHHHHHHhC
Confidence 36899999999999887655543
No 57
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=25.87 E-value=1.6e+02 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.4
Q ss_pred CeEEEEEEEEEEecC-----CEEEEEEECCCCCcccCCCCCeEEEEee
Q 024591 42 NFKEFKLVKRLQLSH-----NVAKFTFELPTPTSVLGLPIGQHISCRK 84 (265)
Q Consensus 42 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~pGq~v~l~~ 84 (265)
....++|++.+.+++ ++++++|+.+... ...|+||+++-|.-
T Consensus 250 ~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~-~~~Y~~GD~l~V~P 296 (688)
T 1tll_A 250 RVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQ-ELQYQPGDHLGVFP 296 (688)
T ss_dssp CCEEEEEEEEEECSCTTCSSCEEEEEEECTTCG-GGCCCTTCEEEECC
T ss_pred CceEEEEEeeeecCCCCCCceEEEEEEecCCCC-CCccCCCCEEEEec
Confidence 345789999999874 6899999986531 37899999999876
No 58
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.17 E-value=2.6e+02 Score=22.74 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=22.1
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCCCCCE
Q 024591 233 DIQVLRCGPPPMNKAMAAHLEALGYTSEML 262 (265)
Q Consensus 233 ~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I 262 (265)
...|+++++..+...+...+++.|+...+|
T Consensus 195 ~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v 224 (368)
T 4eyg_A 195 PDAMFVFVPAGQGGNFMKQFAERGLDKSGI 224 (368)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHTTGGGTTC
T ss_pred CCEEEEeccchHHHHHHHHHHHcCCCcCCc
Confidence 345666688778888888999998875433
No 59
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=22.81 E-value=1.7e+02 Score=19.44 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=25.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 231 ASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 231 ~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
.+...|+.|........+...|++.|+. +++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~--~v~~ 82 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFE--HVSE 82 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCS--CEEE
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCc--CEEE
Confidence 3466888999888888888999999986 5543
No 60
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=22.53 E-value=3e+02 Score=22.40 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=22.3
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCCC
Q 024591 233 DIQVLRCGPPPMNKAMAAHLEALGYTS 259 (265)
Q Consensus 233 ~~~v~vCGp~~~~~~~~~~l~~~gv~~ 259 (265)
...|++|+...+...+...+++.|+..
T Consensus 197 ~d~v~~~~~~~~a~~~~~~~~~~g~~~ 223 (364)
T 3lop_A 197 VQAIFLGATAEPAAQFVRQYRARGGEA 223 (364)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEecCcHHHHHHHHHHHHcCCCC
Confidence 456788899998889999999998754
No 61
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=22.49 E-value=1.6e+02 Score=21.74 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=34.5
Q ss_pred CCCCeEEEEEEEEEEe---cCCEEEEEEECCCCC-------cccCCCCCeEEEEee
Q 024591 39 DPENFKEFKLVKRLQL---SHNVAKFTFELPTPT-------SVLGLPIGQHISCRK 84 (265)
Q Consensus 39 ~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~pGq~v~l~~ 84 (265)
.|..|++++++..-.- ++.-+.++|+..... ..+.++.|..|.+.-
T Consensus 19 ~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~V~~~~vk~LeLRiGD~VKVd~ 74 (153)
T 2fhd_A 19 YPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMSTVNSNQIKRFFLKKGDVVQSTR 74 (153)
T ss_dssp SSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEEEETTSEEESCCCTTCEEEETT
T ss_pred CcccccceEEEccCCCcccCCeEEEEEEcCCCCCccChhhceeeeeecCCEEEECC
Confidence 4789999999998855 777888888755321 237789999888763
No 62
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.03 E-value=38 Score=25.15 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=37.5
Q ss_pred cCCCCCeEEEEee---ceEeeeeeec----CCCCcEEEEEEeccCCCCcc---cCCCCEEEEeeeeeeeEe
Q 024591 72 LGLPIGQHISCRK---EIVKMIFVGS----HSDGIFFNILYHATCLLSLL---ISVNSMQSVANIIGRFRY 132 (265)
Q Consensus 72 ~~~~pGq~v~l~~---~~~r~ysis~----~~~~~~~~~~ik~~~~~S~~---~~~G~~v~i~gp~G~~~~ 132 (265)
.....|..|.+.. ...+.|++-. ++..+. +.|.......+. .++||.|.+..|.|...+
T Consensus 81 ~~V~~Gs~V~l~~~~~~~~~~~~iVg~~ead~~~~~--~~IS~~SPlG~ALlGk~~GD~v~~~~p~G~~~~ 149 (156)
T 2f23_A 81 EVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTP--MKISDASPMGKALLGHRVGDVLSLDTPKGKREF 149 (156)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSS--EEEETTSHHHHHHTTCCTTCEEEEEETTEEEEE
T ss_pred CEEEeCcEEEEEEcCCCCEEEEEEEChhHcCcCCCC--EEECCCCHHHHHHcCCCCCCEEEEEcCCCcEEE
Confidence 4578999999886 5667888432 223332 334333222222 799999999999997544
No 63
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=21.41 E-value=3.3e+02 Score=22.12 Aligned_cols=93 Identities=11% Similarity=0.002 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEE-ecCCCCCCCCcccCCCHHHHhhhCCCCC
Q 024591 153 FQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYV-LNQPPESWNGGVGFVSKEMIQTHCPAPA 231 (265)
Q Consensus 153 ~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~-~s~~~~~~~~~~g~~~~~~l~~~~~~~~ 231 (265)
..+++.+.+. -..+++-++|...+....-..+.+.+..++.. +++... +..... ... ..+++... .
T Consensus 137 ~~~~~~l~~~-~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G--~~v~~~~~~~~~~-------d~~-~~~~~l~~--~ 203 (366)
T 3td9_A 137 AAMAVFAYKN-LGAKRVVVFTDVEQDYSVGLSNFFINKFTELG--GQVKRVFFRSGDQ-------DFS-AQLSVAMS--F 203 (366)
T ss_dssp HHHHHHHHHT-SCCCEEEEEEETTCHHHHHHHHHHHHHHHHTT--CEEEEEEECTTCC-------CCH-HHHHHHHH--T
T ss_pred HHHHHHHHHh-cCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCC--CEEEEEEeCCCCc-------cHH-HHHHHHHh--c
Confidence 3455555443 12468988886433222222344444444442 343322 222111 111 23333332 2
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 232 SDIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 232 ~~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
....|++++...+...+...+++.|+.
T Consensus 204 ~~d~v~~~~~~~~a~~~~~~~~~~g~~ 230 (366)
T 3td9_A 204 NPDAIYITGYYPEIALISRQARQLGFT 230 (366)
T ss_dssp CCSEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEccchhHHHHHHHHHHHcCCC
Confidence 344667779999988899999999875
No 64
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=21.39 E-value=1.9e+02 Score=23.60 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=33.7
Q ss_pred ceEEEEEeCCChHHHH-HHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEE
Q 024591 138 RAFGMTAGGSGITPMF-QVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYY 202 (265)
Q Consensus 138 ~~~vlia~GtGIap~~-~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~ 202 (265)
.++++..||++...+. .+++.+... .++.++.+.... ..+++.+..++.++ +++..
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~~----~~i~vv~G~~~~----~~~~l~~~~~~~~~-v~v~~ 214 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPKT----KIISIATSSSNP----NLKKLQKFAKLHNN-IRLFI 214 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCTT----SCEEEEECTTCT----THHHHHHHHHTCSS-EEEEE
T ss_pred CeEEEEECCCchhhHHHHHHHHhhcC----CCEEEEECCCch----HHHHHHHHHhhCCC-EEEEe
Confidence 4677778888866544 344444322 367777766543 25677777666655 66653
No 65
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=21.13 E-value=2.2e+02 Score=23.09 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=21.6
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCC
Q 024591 233 DIQVLRCGPPPMNKAMAAHLEALGYT 258 (265)
Q Consensus 233 ~~~v~vCGp~~~~~~~~~~l~~~gv~ 258 (265)
...+++|+...+...+...+++.|+.
T Consensus 194 ~d~v~~~~~~~~a~~~~~~~~~~g~~ 219 (356)
T 3ipc_A 194 VSIIYWGGLHTEAGLIIRQAADQGLK 219 (356)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEccCchHHHHHHHHHHHCCCC
Confidence 45678899999888888899888875
No 66
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=20.67 E-value=1.3e+02 Score=23.55 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEEEEeeCCCcccccHHHHHHHHHhCCCCeEEEEEecCCCC-CCCC--cccCC--CHHHH
Q 024591 149 ITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPE-SWNG--GVGFV--SKEMI 223 (265)
Q Consensus 149 Iap~~~~l~~l~~~~~~~~~i~L~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~-~~~~--~~g~~--~~~~l 223 (265)
+.-++..++..+... ...=.+++++-+....+... + .....+ +++.-++++.+. .... ..|.. ..+.+
T Consensus 68 V~~L~~~i~~~Lg~~--~~~~V~IvGaG~lG~aLa~~-~---~~~~~g-~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL 140 (212)
T 3keo_A 68 VKKLMNFFAEILNDH--STTNVMLVGCGNIGRALLHY-R---FHDRNK-MQISMAFDLDSNDLVGKTTEDGIPVYGISTI 140 (212)
T ss_dssp HHHHHHHHHHHTTTT--SCEEEEEECCSHHHHHHTTC-C---CCTTSS-EEEEEEEECTTSTTTTCBCTTCCBEEEGGGH
T ss_pred HHHHHHHHHHHhCCC--CCCEEEEECcCHHHHHHHHh-h---hcccCC-eEEEEEEeCCchhccCceeECCeEEeCHHHH
Confidence 344555555555331 23345777775533222111 0 011123 777777765433 2111 11110 12346
Q ss_pred hhhCCCCCCCcEEEEeCCHHHHHHHHHHHHHCCCCCCCEEeC
Q 024591 224 QTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQF 265 (265)
Q Consensus 224 ~~~~~~~~~~~~v~vCGp~~~~~~~~~~l~~~gv~~~~I~~~ 265 (265)
.+.+.. .+-..+++|-|..-.+.+.+.|.+.|+. .|+.|
T Consensus 141 ~~~v~~-~~Id~vIIAvPs~~aq~v~d~lv~~GIk--~I~nF 179 (212)
T 3keo_A 141 NDHLID-SDIETAILTVPSTEAQEVADILVKAGIK--GILSF 179 (212)
T ss_dssp HHHC-C-CSCCEEEECSCGGGHHHHHHHHHHHTCC--EEEEC
T ss_pred HHHHHH-cCCCEEEEecCchhHHHHHHHHHHcCCC--EEEEc
Confidence 666664 3456899999999999999999999976 66655
No 67
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=20.36 E-value=77 Score=22.67 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEe
Q 024591 241 PPPMNKAMAAHLEALGYTSEMLFQ 264 (265)
Q Consensus 241 p~~~~~~~~~~l~~~gv~~~~I~~ 264 (265)
++..++..++.+++.|++.++|..
T Consensus 119 ~~e~~~~f~~~~~~~G~~~~~ii~ 142 (151)
T 1e5p_A 119 TPEENEILVQFAHEKKIPVENILN 142 (151)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred CHHHHHHHHHHHHHcCCCHHHEEE
Confidence 466778888999999999999864
Done!