BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024592
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LFJ8|RFA2B_ARATH Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana
GN=RPA2B PE=2 SV=1
Length = 278
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 184/278 (66%), Gaps = 13/278 (4%)
Query: 1 MYSGEFDGAAAFAGGGFMPSQATTVPDPSSSFSKNRNVRTLLPMTVKQLSELSSNDESSA 60
MY G+FDG AAFAGGGFMPSQATT SSS KNR+VRTLLP+T+KQLS S+ ES+
Sbjct: 1 MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGESNF 60
Query: 61 SIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMY 120
SIDG D+ T+ +VG + M+++ Q F++DDGTG ++C RW H + E E+ + GMY
Sbjct: 61 SIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMY 120
Query: 121 VRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRGGSSNQ------ 174
VR++GHLK FQ KRS+N +S+RP+ DFNEI HF EC+YV +YNT+LRGGS Q
Sbjct: 121 VRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPR 180
Query: 175 PQM---TNSNHLKEYNAISSNHYS---FDEGKSIDQMVLDFLRRPEFLANNNGVHRNVIS 228
PQM T K Y SN + D + Q VL++L +P + + GVH ++I+
Sbjct: 181 PQMPYSTMPTPAKPYQTGPSNQFPNQFNDSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIA 240
Query: 229 QQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSAVNA 265
++L +P+ ++ EALE L+ + +YS +DE +KS NA
Sbjct: 241 RELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTANA 278
>sp|Q9ZQ19|RFA2A_ARATH Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana
GN=RPA2A PE=1 SV=2
Length = 279
Score = 207 bits (526), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 169/279 (60%), Gaps = 28/279 (10%)
Query: 3 SGEFDGAAAFAGGGFMPSQATTVPDPSSSFSKNRNVRTLLPMTVKQLSEL--SSNDESSA 60
S +F+ + F+GGGFM SQ + + SSS +KNR+ + L+P+TVKQ++E SS ++S
Sbjct: 4 SSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEKSGL 63
Query: 61 SIDGADVNTITVVGIVCDM-QDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGM 119
I+G + +++VG+VCD + K + F +DDGTGRI+C RW E + E+ + G
Sbjct: 64 VINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGT 123
Query: 120 YVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIY----------------VQLY 163
YVR+ GHLK FQ K L +S+RPI+DFNE+T H++ECI+ Q
Sbjct: 124 YVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSV 183
Query: 164 NTRLRGGS-SNQPQMTNSNHLKEYNAISSNHYSFDEGKSIDQMVLDFLRRPEFLANNNGV 222
NT +GGS +NQ + N +SS + + K++D M+LD+L++P A G+
Sbjct: 184 NTTFQGGSNTNQATLLNP-------VVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGI 236
Query: 223 HRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYK 260
H + I+QQL +P +KL ++SL + L+YS IDE+H+K
Sbjct: 237 HIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275
>sp|Q92373|RFA2_SCHPO Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb2 PE=1 SV=1
Length = 279
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 24/237 (10%)
Query: 41 LLPMTVKQLSELSS-NDESSASIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIEC 99
L P+T+KQ+ S + ++ IDG +V +T VG++ ++ + + I+DGTG IE
Sbjct: 50 LRPVTIKQILNASQVHADAEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEV 109
Query: 100 SRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIY 159
W H + +++++ YVRVYG++K F K + + +R I D NE+ HF+E I
Sbjct: 110 RHWEH----IDALSELATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIA 165
Query: 160 VQLYNTRLRGG--SSNQPQMTNSNHLKEYNAISSNHYSFDEGKSIDQMVLDFLRRPEFLA 217
V L+ T+ +N P SN L YN ISSN S++Q + ++ P +
Sbjct: 166 VHLHFTQKANAVNGANAPGYGTSNALG-YNNISSN----GAANSLEQKLAEYSLTPAQMT 220
Query: 218 ----------NNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY-SIDEFHYKSAV 263
N GVH ++Q + +D L + L + ++Y +IDE H+KS +
Sbjct: 221 VMQAIHSAPETNEGVHVRQLAQSVGPGID-LTAVTDFLQQEGIIYTTIDENHFKSVL 276
>sp|Q63528|RFA2_RAT Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2
PE=2 SV=2
Length = 270
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 132/258 (51%), Gaps = 16/258 (6%)
Query: 13 AGGGFMPSQAT-TVPDPSSSFSKNR-NVRTLLPMTVKQLSELSSNDESSASIDGADVNTI 70
A GG+ S P PS + K+R + ++P T+ QL + DE I +++ +
Sbjct: 16 AAGGYTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLTDEV-FKIGDVEISQV 74
Query: 71 TVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA 129
T+VGI+ + ++ IDD T ++ +W E + YV+V GHL++
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRS 134
Query: 130 FQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRGGSS-NQPQMTNSNHLKEYNA 188
FQ+K+SL A+ + P+ D NE T+H +E + L ++ +S +P M+N + E
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPG-MGEPGN 193
Query: 189 ISSNHYSFDEGKSIDQ-MVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244
S N++ G ++ Q VL+ ++ RPE L +++ SQ ++P+ + +A++
Sbjct: 194 FSGNNFMPANGLTVVQNQVLNLIKACPRPEGLN-----FQDLRSQLQHMPVASIKQAVDF 248
Query: 245 L-NENSLVYSIDEFHYKS 261
L NE + ++D+ H+KS
Sbjct: 249 LCNEGHIYSTVDDDHFKS 266
>sp|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1
SV=1
Length = 270
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 124/243 (51%), Gaps = 13/243 (5%)
Query: 26 PDPSSSFSKNR-NVRTLLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEP 84
P PS + K+R + ++P T+ QL + DE I +++ +T+VGI+ +
Sbjct: 30 PTPSQAEKKSRVRAQHIVPCTISQLLSATLTDEV-FRIGDVEISQVTIVGIIRHAEKAPT 88
Query: 85 QFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRP 143
++ IDD T ++ +W E + YV+V GHL++FQ+K+SL A+ + P
Sbjct: 89 NIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRSFQNKKSLVAFKIIP 148
Query: 144 IIDFNEITSHFVECIYVQLYNTRLRG-GSSNQPQMTNSNHLKEYNAISSNHYSFDEGKSI 202
+ D NE T+H +E + + ++ S+ +P M+N + +N +N + +
Sbjct: 149 LEDMNEFTAHILEVVNSHMMLSKPNSQASAGRPSMSNPGMSESFNFSGNNFMPANRLTVV 208
Query: 203 DQMVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALESL-NENSLVYSIDEFH 258
VL+ ++ RPE L +++ SQ ++P+ + +A++ L NE + ++D+ H
Sbjct: 209 QNQVLNLIKACPRPEGLN-----FQDLRSQLQHMPVPSIKQAVDFLCNEGHIYSTVDDDH 263
Query: 259 YKS 261
+KS
Sbjct: 264 FKS 266
>sp|P26754|RFA2_YEAST Replication factor A protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA2 PE=1 SV=1
Length = 273
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 39/267 (14%)
Query: 10 AAFAGGGFMPSQATTVPDPSSSFSK-NRNVRTLLPMTVKQLSELSSNDESSASID-GADV 67
++ GGGF S++ P S S+ N V TL P+T+KQ+ E + + + ++
Sbjct: 11 SSVTGGGFENSESR----PGSGESETNTRVNTLTPVTIKQILESKQDIQDGPFVSHNQEL 66
Query: 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVN-------------- 113
+ + VG+V ++ D I+DGTG+IE +W+ + + N
Sbjct: 67 HHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQ 126
Query: 114 QISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRGGSSN 173
Q G YV+V+G LK F K+++ ++PI FNE+ +H +E I + G
Sbjct: 127 QFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH----SIASGMMK 182
Query: 174 QPQMTNSNH------LKEYNAISSNHYSFDEGKSIDQMVLDFLRR--PEFLANNNGVHRN 225
QP + SN+ +K+ N SS G S Q +L+F ++ AN+ V
Sbjct: 183 QPLESASNNNGQSLFVKDDNDTSS-------GSSPLQRILEFCKKQCEGKDANSFAVPIP 235
Query: 226 VISQQLNLPMDKLMEALESLNENSLVY 252
+ISQ LNL + +L + +Y
Sbjct: 236 LISQSLNLDETTVRNCCTTLTDQGFIY 262
>sp|Q5RC43|RFA2_PONAB Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2
SV=1
Length = 270
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 121/243 (49%), Gaps = 13/243 (5%)
Query: 26 PDPSSSFSKNR-NVRTLLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEP 84
P PS + K+R + ++P T+ QL + DE I +++ +T+VGI+ +
Sbjct: 30 PAPSQAEKKSRARAQHIVPCTISQLLSATLVDEV-FRIGNVEISQVTIVGIIRHAEKAPT 88
Query: 85 QFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRP 143
++ IDD T ++ +W +E + YV+V GHL++FQ+K+SL A+ + P
Sbjct: 89 NIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMP 148
Query: 144 IIDFNEITSHFVECIYVQLYNTRLRGGSSNQPQMTNSNHLKEYNAISSNHYSFDEGKSID 203
+ D NE T+H +E I + ++ S ++ + E N + G ++
Sbjct: 149 LEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVA 208
Query: 204 Q-MVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFH 258
Q VL+ ++ RPE L +++ +Q ++ + + +A++ L+ +YS +D+ H
Sbjct: 209 QNQVLNLIKACPRPEGLN-----FQDLKNQLKHMSVSSVKQAMDFLSNEGHIYSTVDDDH 263
Query: 259 YKS 261
+KS
Sbjct: 264 FKS 266
>sp|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1
SV=1
Length = 270
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 121/243 (49%), Gaps = 13/243 (5%)
Query: 26 PDPSSSFSKNR-NVRTLLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEP 84
P PS + K+R + ++P T+ QL + DE I +++ +T+VGI+ +
Sbjct: 30 PAPSQAEKKSRARAQHIVPCTISQLLSATLVDEV-FRIGNVEISQVTIVGIIRHAEKAPT 88
Query: 85 QFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRP 143
++ IDD T ++ +W +E + YV+V GHL++FQ+K+SL A+ + P
Sbjct: 89 NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMP 148
Query: 144 IIDFNEITSHFVECIYVQLYNTRLRGGSSNQPQMTNSNHLKEYNAISSNHYSFDEGKSID 203
+ D NE T+H +E I + ++ S ++ + E N + G ++
Sbjct: 149 LEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVA 208
Query: 204 Q-MVLDFLR---RPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFH 258
Q VL+ ++ RPE L +++ +Q ++ + + +A++ L+ +YS +D+ H
Sbjct: 209 QNQVLNLIKACPRPEGLN-----FQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDH 263
Query: 259 YKS 261
+KS
Sbjct: 264 FKS 266
>sp|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit OS=Homo sapiens GN=RPA4 PE=1
SV=2
Length = 261
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 115/262 (43%), Gaps = 14/262 (5%)
Query: 4 GEFDGAAAFAGGGFMPSQATTVPDPSSSFSKNRNVRTLLPMTVKQLSELSSND-ESSASI 62
G A +GG + P + K R ++ ++P V QL LSS + +
Sbjct: 10 GSISAADGASGGSDQLCERDATPAIKTQRPKVR-IQDVVPCNVNQL--LSSTVFDPVFKV 66
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYV 121
G V+ +++VG++ + + IDD T + IE +W + + +V +S G+YV
Sbjct: 67 RGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGRE-KVKQVTPLSVGVYV 125
Query: 122 RVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTRLRGGSSNQPQMTNSN 181
+V+G LK +SL + + D NE T H +E + + + R ++ + + +
Sbjct: 126 KVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESVPVSPS 185
Query: 182 HLKEYNAISSNHYSFDEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEA 241
+ + +H +F I VL + +H + +Q +L + + EA
Sbjct: 186 EVNDAGDNDESHRNF-----IQDEVLRLIHECPH-QEGKSIH-ELRAQLCDLSVKAIKEA 238
Query: 242 LESLNENSLVY-SIDEFHYKSA 262
++ L +Y ++D H+KSA
Sbjct: 239 IDYLTVEGHIYPTVDREHFKSA 260
>sp|Q9LMK5|STN1_ARATH CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1
Length = 160
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 41 LLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEPQFI-FLIDDGTGRIEC 99
L+ +++L++ + S + + GA V+ + +VG + +D P+F+ F +DDGTG + C
Sbjct: 12 LVARDIQRLTQSPTESNSFSLLGGACVSRVEIVGTIVS-RDLTPKFLKFGVDDGTGCVTC 70
Query: 100 ------------SRWAHEQMEF------NEVNQISKGMYVRVYGHLKAFQDKRSLNAYSL 141
SRW + + QI G RV G + +++ + A
Sbjct: 71 VMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVMQITANVA 130
Query: 142 RPIIDFNEITSHFVECIYVQLYNTRLR 168
D N H++EC+ + R+R
Sbjct: 131 VAERDPNAEILHWLECLKLGQSCYRVR 157
>sp|Q4R804|STN1_MACFA CST complex subunit STN1 OS=Macaca fascicularis GN=OBFC1 PE=2 SV=1
Length = 368
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 46/228 (20%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRW--------------AHE--- 105
+G + + V+G V +++++ + + +DD TG I C W A E
Sbjct: 50 NGHPIKQVDVLGTVVGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARELSL 109
Query: 106 -------QMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIID--FNEITSHFVE 156
Q +I G +RV G ++ ++++R ++A + + D +N + +E
Sbjct: 110 TSQLKKLQETIERRTKIEIGDTIRVRGSIRTYREEREIHATAYYKVDDPVWNIQIARMLE 169
Query: 157 --CIYVQLYNTRLRG------------GSSNQPQMTNSNHLKEYNAISSNHYSFDEGKSI 202
IY ++Y+ R G+ + P +T+ K + N +S
Sbjct: 170 LPTIYRKIYDQPFRSSALEKEEALSNPGALDLPSLTSLLSEKAKEFLMENRV-----QSF 224
Query: 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250
Q L+ + LAN +H + S Q+N D +A+ S+ +N++
Sbjct: 225 YQQELEMVESLLCLANQPVIH-SACSDQVNFKKDTTSKAIHSIFKNAI 271
>sp|Q8DWE0|DPO3_STRMU DNA polymerase III PolC-type OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=polC PE=3 SV=1
Length = 1465
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N IT G+V D++ K + F + D T +WA + E + + ISKG ++R
Sbjct: 240 NRITFEGLVFDVERKTTRTGRHIINFKMTDYTSSFPMQKWAKDDEELKKYDMISKGAWLR 299
Query: 123 VYGHLK--AFQDKRSLNAYSLRPII 145
V G+++ F ++N +++ I+
Sbjct: 300 VRGNIENNPFTKALTMNVQNVKTIV 324
>sp|Q9PGU4|DPO3A_XYLFA DNA polymerase III subunit alpha OS=Xylella fastidiosa (strain 9a5c)
GN=dnaE PE=3 SV=2
Length = 1193
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 66 DVNTITVVGIVCDMQDKEPQFIFL-IDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVY 124
+VNTI + G+V ++ K +F+ ++DG GRIECS ++ EF + +++ + V
Sbjct: 1021 EVNTI-LAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHL--LTRDRILIVK 1077
Query: 125 GHLK--AFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQL 162
G L+ F D SL +R D+ ++ + + + + +++
Sbjct: 1078 GGLREDEFNDGYSLR---IRQCWDYTQLCTDYAQRLLLRV 1114
>sp|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit OS=Crithidia fasciculata
GN=RPA2 PE=3 SV=1
Length = 258
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 24/141 (17%)
Query: 41 LLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDK----------EPQFIFLI 90
+ P+T+KQ+ E S +DG +V TVVG V ++ F + I
Sbjct: 30 IRPLTIKQMLEAQSVGGGVMVVDGREVTQATVVGRVVGYENANMASGGGAITAKHFGYRI 89
Query: 91 DDGTGRIECSRW-----AHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPII 145
D TG I +W A E + N +VR G + +Q + ++ +
Sbjct: 90 TDNTGMIVVRQWIDADRAQEPIPLNT--------HVRASGTVNVWQQSPIVTG-TVVSMA 140
Query: 146 DFNEITSHFVECIYVQLYNTR 166
D NE+ H ++ I L T+
Sbjct: 141 DSNEMNYHMLDAILTHLRLTQ 161
>sp|Q08DB2|STN1_BOVIN CST complex subunit STN1 OS=Bos taurus GN=OBFC1 PE=2 SV=1
Length = 370
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 26/110 (23%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAH-------------EQMEF 109
+G + + ++G V +++K+ + + +DD TG I C W E
Sbjct: 50 NGHPIKQVDILGTVIGVREKDAFYSYGVDDSTGVINCICWKRLNNTKSSSATATPSAREL 109
Query: 110 NEVNQISK-------------GMYVRVYGHLKAFQDKRSLNAYSLRPIID 146
+ +Q+ K G +RV GH++ F+ +R ++A + + D
Sbjct: 110 SLTSQLKKLQETIAQRAKLEIGDIIRVRGHIRMFRGEREIHATTYYKVDD 159
>sp|Q9H668|STN1_HUMAN CST complex subunit STN1 OS=Homo sapiens GN=OBFC1 PE=1 SV=2
Length = 368
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 46/228 (20%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRW--------------AHE--- 105
+G + + V+G V +++++ + + +DD TG I C W A E
Sbjct: 50 NGHPIKQVDVLGTVIGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARELSL 109
Query: 106 -------QMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIID--FNEITSHFVE 156
Q + +I G +RV G ++ ++++R ++A + + D +N + +E
Sbjct: 110 TSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREEREIHATTYYKVDDPVWNIQIARMLE 169
Query: 157 --CIYVQLYNTRLRG------------GSSNQPQMTNSNHLKEYNAISSNHYSFDEGKSI 202
IY ++Y+ G+ + P +T+ K + N +S
Sbjct: 170 LPTIYRKVYDQPFHSSALEKEEALSNPGALDLPSLTSLLSEKAKEFLMENRV-----QSF 224
Query: 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250
Q L+ + LAN +H + S Q+N D +A+ S+ +N++
Sbjct: 225 YQQELEMVESLLSLANQPVIH-SASSDQVNFKKDTTSKAIHSIFKNAI 271
>sp|P0DA77|DPO3_STRPQ DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=polC PE=3 SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG+++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGVWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|P0DA76|DPO3_STRP3 DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=polC PE=3 SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG+++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGVWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q6AYD2|STN1_RAT CST complex subunit STN1 OS=Rattus norvegicus GN=Obfc1 PE=2 SV=1
Length = 408
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 31/150 (20%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHE----------------- 105
+G + + ++G V ++++E + + +DD TG I C W
Sbjct: 57 NGHPIRRVDIMGAVISVKERETFYSYGVDDATGVINCVCWKRPSNAESSSDPAILSTSRE 116
Query: 106 ----------QMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIID--FNEITSH 153
Q + +I G +RV G+++ F+++R + A + D +N +
Sbjct: 117 LSMTSQLKKLQETIEQKTKIGIGDIIRVRGYVRMFREEREICATIYYKVDDPVWNMQIAR 176
Query: 154 FVEC--IYVQLYNTRLRGGSSNQPQMTNSN 181
+E +Y ++Y+ R + + + NS
Sbjct: 177 MLELPELYKKVYDQPFRNPALKEEEALNSK 206
>sp|Q5X9U8|DPO3_STRP6 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=polC PE=3 SV=1
Length = 1465
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q1JJW3|DPO3_STRPC DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=polC PE=3 SV=1
Length = 1465
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q1J9R4|DPO3_STRPB DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=polC PE=3 SV=1
Length = 1465
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q8NZB5|DPO3_STRP8 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=polC PE=3 SV=1
Length = 1465
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q48R90|DPO3_STRPM DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=polC PE=3 SV=1
Length = 1465
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|A2RGI3|DPO3_STRPG DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=polC PE=3 SV=1
Length = 1465
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q1JEV4|DPO3_STRPD DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=polC PE=3 SV=1
Length = 1465
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q1J4M0|DPO3_STRPF DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=polC PE=3 SV=1
Length = 1465
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|P0C0B7|DPO3_STRPY DNA polymerase III PolC-type OS=Streptococcus pyogenes GN=polC PE=3
SV=1
Length = 1465
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|P0C0B8|DPO3_STRP1 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M1
GN=polC PE=3 SV=1
Length = 1465
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 68 NTITVVGIVCDMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
N I G+V D++ K + F + D T +WA + E + + I+KG ++R
Sbjct: 242 NRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWLR 301
Query: 123 VYGHLKA--FQDKRSLNAYSLRPII 145
V G+++ F ++N ++ I+
Sbjct: 302 VQGNIETNPFTKSLTMNVQQVKEIV 326
>sp|Q6DJ48|STN1_XENTR CST complex subunit STN1 OS=Xenopus tropicalis GN=obfc1 PE=2 SV=1
Length = 368
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 29/104 (27%)
Query: 64 GADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWA---------------HEQME 108
G + + V+G V +++KE + + +DD TG I C+ W H
Sbjct: 48 GHPIKQVDVLGTVVFVREKENFYSYGVDDSTGVISCTCWKSTAPTEVSSPGTSARHVSSS 107
Query: 109 FNEVNQISKGMY--------------VRVYGHLKAFQDKRSLNA 138
+++ + + +Y +RV G +K F+D+R + A
Sbjct: 108 SKDLDVMMRELYKEESKKAKLDIGDTIRVRGSIKVFRDQREIVA 151
>sp|Q87EY0|DPO3A_XYLFT DNA polymerase III subunit alpha OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dnaE PE=3 SV=1
Length = 1193
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 66 DVNTITVVGIVCDMQDKEPQFIFL-IDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVY 124
+VNTI + G+V ++ K +F+ ++DG GRIECS ++ EF + +++ + V
Sbjct: 1021 EVNTI-LAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHL--LTRDRILIVK 1077
Query: 125 GHLKAFQDKRSLNAYSL--RPIIDFNEITSHFVECIYVQL 162
G L+ +D+ + YSL R D+ ++ + + + + +++
Sbjct: 1078 GGLR--EDEFN-GGYSLRIRQCWDYAQLCTDYAQRLLLRV 1114
>sp|Q03FS8|DPO3_PEDPA DNA polymerase III PolC-type OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=polC PE=3 SV=1
Length = 1437
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 46 VKQLSELSSNDESSASIDG----ADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSR 101
+ QL +++ +E S SI+G A+V T ++ + IF + D T I +
Sbjct: 226 IVQLRDIT-QEERSVSIEGYIFDAEVKT---------LRSERQLLIFKVTDYTSSITIKK 275
Query: 102 WAHEQMEFNEVNQISKGMYVRVYGHLK--AFQDKRSLNAYSL 141
++ + + + I KG++VRV G ++ +F ++NAY +
Sbjct: 276 FSRNEADEQLFSAIKKGLWVRVRGSIQEDSFMKDLTMNAYDI 317
>sp|Q03MX3|DPO3_STRTD DNA polymerase III PolC-type OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=polC PE=3 SV=1
Length = 1464
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 21 QATTVPDPSSSFSKNRNVRTLLPMTVKQLSELSSNDESSAS--ID-GADVNTITVVGIVC 77
Q++ VP P ++N KQ ++S D++ + I+ ++ N I G +
Sbjct: 199 QSSPVPPPQKHQAQN--------FAEKQSQRVASFDKAEITPMIEVNSEENRIVFEGYIF 250
Query: 78 DMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK--AF 130
D++ +E + F + D T RW + E + I KG +VRV G ++ F
Sbjct: 251 DVEQRETKTGRIIINFKVTDYTSSFAMQRWVKDSEELVKFGMIKKGNWVRVRGRIENNPF 310
Query: 131 QDKRSLNAYSLRPI 144
++N ++ I
Sbjct: 311 THSLTMNVQDIKEI 324
>sp|Q5M6H0|DPO3_STRT2 DNA polymerase III PolC-type OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=polC PE=3 SV=1
Length = 1464
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 21 QATTVPDPSSSFSKNRNVRTLLPMTVKQLSELSSNDESSAS--ID-GADVNTITVVGIVC 77
Q++ VP P ++N KQ ++S D++ + I+ ++ N I G +
Sbjct: 199 QSSPVPPPQKHQAQN--------FAEKQSQRVASFDKAEITPMIEVNSEENRIVFEGYIF 250
Query: 78 DMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK--AF 130
D++ +E + F + D T RW + E + I KG +VRV G ++ F
Sbjct: 251 DVEQRETKTGRIIINFKVTDYTSSFAMQRWVKDSEELVKFGMIKKGNWVRVRGRIENNPF 310
Query: 131 QDKRSLNAYSLRPI 144
++N ++ I
Sbjct: 311 THSLTMNVQDIKEI 324
>sp|Q5M1Y0|DPO3_STRT1 DNA polymerase III PolC-type OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=polC PE=3 SV=1
Length = 1464
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 21 QATTVPDPSSSFSKNRNVRTLLPMTVKQLSELSSNDESSAS--ID-GADVNTITVVGIVC 77
Q++ VP P ++N KQ ++S D++ + I+ ++ N I G +
Sbjct: 199 QSSPVPPPQKHQAQN--------FAEKQSQRVASFDKAEITPMIEVNSEENRIVFEGYIF 250
Query: 78 DMQDKEPQ-----FIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK--AF 130
D++ +E + F + D T RW + E + I KG +VRV G ++ F
Sbjct: 251 DVEQRETKTGRIIINFKVTDYTSSFAMQRWVKDSEELVKFGMIKKGNWVRVRGRIENNPF 310
Query: 131 QDKRSLNAYSLRPI 144
++N ++ I
Sbjct: 311 THSLTMNVQDIKEI 324
>sp|P63984|DPO3_STRA5 DNA polymerase III PolC-type OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=polC PE=3 SV=1
Length = 1468
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 88 FLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK--AFQDKRSLNAYSLRPII 145
F + D T +WA + E + + ISKG ++RV G+++ F ++N ++ I+
Sbjct: 270 FKMTDYTSSFAMQKWAKDDEELKKYDMISKGSWLRVRGNIENNNFTKSLTMNVQDIKEIV 329
>sp|P63983|DPO3_STRA3 DNA polymerase III PolC-type OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=polC PE=3 SV=1
Length = 1468
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 88 FLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK--AFQDKRSLNAYSLRPII 145
F + D T +WA + E + + ISKG ++RV G+++ F ++N ++ I+
Sbjct: 270 FKMTDYTSSFAMQKWAKDDEELKKYDMISKGSWLRVRGNIENNNFTKSLTMNVQDIKEIV 329
>sp|Q6KZQ3|SYD_PICTO Aspartate--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027
/ DSM 9790 / JCM 10055 / NBRC 100828) GN=aspS PE=3 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122
D AD++ + + G D++ + ++ D TGRI+ + + F+EV +I++ ++
Sbjct: 7 DAADLDEVELSGWAEDIRRIKSIVFIILRDVTGRIQVTVKSENVKNFDEVYKINRESVLK 66
Query: 123 VYG 125
V+G
Sbjct: 67 VHG 69
>sp|Q8K2X3|STN1_MOUSE CST complex subunit STN1 OS=Mus musculus GN=Obfc1 PE=1 SV=2
Length = 378
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 27/103 (26%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRW-----------------AHE 105
+G + + ++G V ++++E + + +DD TG I C W A E
Sbjct: 57 NGHPIRRVDIMGAVISVKERETFYSYGVDDATGVINCVCWKKLSNAESSSDPAILSTARE 116
Query: 106 ----------QMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNA 138
Q + +I G +RV G ++ F+++R + A
Sbjct: 117 LSMTSQLKKLQETIEQKTRIGIGDIIRVRGSVRMFREEREICA 159
>sp|D2GXY4|STN1_AILME CST complex subunit STN1 OS=Ailuropoda melanoleuca GN=OBFC1 PE=3
SV=2
Length = 367
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 63 DGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRW 102
+G + + ++G V ++K+ + + +DDGTG I C W
Sbjct: 49 NGHPIKQVEILGTVIGRREKDAFYSYGVDDGTGVINCICW 88
>sp|B8JKF4|STN1_DANRE CST complex subunit STN1 OS=Danio rerio GN=obfc1 PE=2 SV=1
Length = 368
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 70 ITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQ 106
+ V+GIV +++E + + +DD TG I C W E+
Sbjct: 58 VDVLGIVVYKREREDFYCYGVDDSTGVINCLCWKDEK 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,892,560
Number of Sequences: 539616
Number of extensions: 3926898
Number of successful extensions: 11034
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 10980
Number of HSP's gapped (non-prelim): 57
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)