Query 024592
Match_columns 265
No_of_seqs 158 out of 553
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pi2_A Replication protein A 3 100.0 3.2E-60 1.1E-64 423.1 17.7 256 5-265 8-270 (270)
2 3kdf_D Replication protein A 3 100.0 4.3E-40 1.5E-44 263.7 17.2 129 37-166 2-131 (132)
3 4gop_B Putative uncharacterize 100.0 8.4E-40 2.9E-44 263.3 15.6 132 35-166 3-136 (136)
4 3kf6_A Protein STN1; OB fold, 99.9 1.3E-22 4.3E-27 166.4 16.1 128 37-164 14-146 (159)
5 3kf8_A Protein STN1; OB fold; 99.2 3.4E-10 1.1E-14 96.4 16.6 124 39-162 47-204 (220)
6 2k50_A Replication factor A re 98.6 3.8E-08 1.3E-12 75.8 5.4 83 68-153 17-111 (115)
7 3mxn_B RECQ-mediated genome in 98.6 1.9E-06 6.6E-11 68.2 14.3 117 38-161 22-146 (150)
8 2kbn_A Conserved protein; nucl 98.6 4.3E-07 1.5E-11 69.5 10.1 73 68-145 16-92 (109)
9 2k75_A Uncharacterized protein 98.5 2.3E-07 7.7E-12 70.7 7.5 76 69-153 15-102 (106)
10 1o7i_A SSB, SSO2364, single st 98.5 5.7E-07 2E-11 69.7 9.2 74 69-148 14-100 (119)
11 3e0e_A Replication protein A; 98.3 5.8E-06 2E-10 61.8 9.3 72 68-144 12-93 (97)
12 3dm3_A Replication factor A; p 97.9 7.1E-05 2.4E-09 56.6 9.7 73 68-145 15-98 (105)
13 1nnx_A Protein YGIW; structura 97.5 0.0025 8.7E-08 48.3 12.0 83 43-144 25-107 (109)
14 1wjj_A Hypothetical protein F2 97.3 0.0021 7.1E-08 51.3 10.1 71 68-144 27-117 (145)
15 3au7_A TIAS, putative uncharac 97.3 0.00097 3.3E-08 61.6 9.2 78 65-146 282-361 (402)
16 2heo_A Z-DNA binding protein 1 97.1 0.0009 3.1E-08 46.1 5.8 59 198-261 7-65 (67)
17 1qbj_A Protein (double-strande 97.0 0.0011 3.6E-08 47.8 5.6 53 200-255 9-61 (81)
18 1qgp_A Protein (double strande 96.9 0.00074 2.5E-08 48.0 4.1 52 201-255 14-65 (77)
19 2lnb_A Z-DNA-binding protein 1 96.8 0.0015 5E-08 46.2 4.4 60 198-262 16-75 (80)
20 1oyi_A Double-stranded RNA-bin 96.8 0.0015 5.1E-08 47.0 4.4 51 199-256 15-65 (82)
21 1xmk_A Double-stranded RNA-spe 96.7 0.00078 2.7E-08 48.2 2.6 49 199-253 9-58 (79)
22 3f2b_A DNA-directed DNA polyme 96.7 0.0059 2E-07 62.7 9.9 79 67-145 17-102 (1041)
23 1wyd_A Hypothetical aspartyl-t 96.6 0.013 4.6E-07 54.7 10.6 74 68-142 17-93 (429)
24 3m4p_A Ehasnrs, asparaginyl-tR 96.5 0.016 5.5E-07 54.5 11.0 77 68-144 31-119 (456)
25 1l0w_A Aspartyl-tRNA synthetas 96.5 0.014 4.7E-07 56.6 10.6 75 68-143 17-99 (580)
26 2xgt_A Asparaginyl-tRNA synthe 96.5 0.021 7.2E-07 53.4 11.3 77 68-145 12-95 (435)
27 1c0a_A Aspartyl tRNA synthetas 96.5 0.013 4.3E-07 57.0 10.1 78 68-145 16-103 (585)
28 3nem_A Aspartyl-tRNA synthetas 96.4 0.016 5.6E-07 54.2 10.2 76 68-143 17-97 (438)
29 1xn7_A Hypothetical protein YH 96.4 0.0034 1.2E-07 44.7 4.3 46 204-255 5-50 (78)
30 2dk5_A DNA-directed RNA polyme 96.4 0.0059 2E-07 44.7 5.5 53 197-253 16-68 (91)
31 1eov_A ASPRS, aspartyl-tRNA sy 96.4 0.015 5.2E-07 55.2 9.8 77 68-144 37-127 (487)
32 2jt1_A PEFI protein; solution 96.3 0.0043 1.5E-07 44.0 4.4 53 201-253 4-56 (77)
33 1e1o_A Lysyl-tRNA synthetase, 96.3 0.031 1.1E-06 53.2 11.5 76 69-144 66-145 (504)
34 1n9w_A Aspartyl-tRNA synthetas 96.1 0.041 1.4E-06 51.2 11.4 69 68-145 14-86 (422)
35 4ex5_A Lysine--tRNA ligase; st 96.1 0.018 6.1E-07 55.2 9.1 77 68-144 87-166 (529)
36 2htj_A P fimbrial regulatory p 96.1 0.0053 1.8E-07 43.4 4.1 45 203-253 2-46 (81)
37 2k02_A Ferrous iron transport 96.1 0.0048 1.6E-07 44.9 3.8 45 204-254 5-49 (87)
38 1x54_A Asparaginyl-tRNA synthe 96.1 0.019 6.4E-07 53.7 8.9 77 68-144 17-98 (434)
39 2yu3_A DNA-directed RNA polyme 96.1 0.0075 2.6E-07 44.6 4.9 58 197-258 33-90 (95)
40 2xvc_A ESCRT-III, SSO0910; cel 96.0 0.01 3.5E-07 39.3 4.5 44 202-251 11-55 (59)
41 1sfu_A 34L protein; protein/Z- 95.9 0.025 8.6E-07 39.8 6.6 54 201-257 12-65 (75)
42 3a74_A Lysyl-tRNA synthetase; 95.8 0.029 1E-06 53.3 8.7 76 69-144 58-136 (493)
43 3i7f_A Aspartyl-tRNA synthetas 95.7 0.061 2.1E-06 51.7 10.6 77 68-144 63-150 (548)
44 1qzg_A Protection of telomeres 95.6 0.34 1.2E-05 40.0 13.6 86 41-140 27-127 (187)
45 3i4p_A Transcriptional regulat 95.5 0.022 7.6E-07 45.7 5.7 48 199-252 1-48 (162)
46 2cfx_A HTH-type transcriptiona 95.4 0.021 7.2E-07 44.7 5.4 48 199-252 3-50 (144)
47 3bju_A Lysyl-tRNA synthetase; 95.4 0.07 2.4E-06 51.0 9.9 100 41-144 32-138 (521)
48 2fu4_A Ferric uptake regulatio 95.4 0.026 8.9E-07 39.7 5.4 51 199-253 15-70 (83)
49 1y0u_A Arsenical resistance op 95.4 0.042 1.4E-06 39.8 6.6 56 201-265 31-86 (96)
50 3b73_A PHIH1 repressor-like pr 95.4 0.016 5.6E-07 43.9 4.3 59 199-263 11-71 (111)
51 2pn6_A ST1022, 150AA long hypo 95.1 0.033 1.1E-06 43.7 5.7 48 199-252 1-48 (150)
52 4dka_C RNA-editing complex pro 95.1 0.14 4.8E-06 38.0 8.5 64 68-131 4-77 (105)
53 2dbb_A Putative HTH-type trans 95.1 0.025 8.4E-07 44.5 4.8 48 199-252 7-54 (151)
54 3cuo_A Uncharacterized HTH-typ 95.0 0.058 2E-06 38.7 6.3 56 201-262 24-82 (99)
55 3r0a_A Putative transcriptiona 94.9 0.031 1.1E-06 42.7 4.9 51 198-253 23-74 (123)
56 2ia0_A Putative HTH-type trans 94.9 0.037 1.2E-06 44.9 5.5 49 198-252 14-62 (171)
57 2cg4_A Regulatory protein ASNC 94.9 0.03 1E-06 44.2 4.8 49 198-252 5-53 (152)
58 2w25_A Probable transcriptiona 94.9 0.037 1.3E-06 43.5 5.4 49 198-252 4-52 (150)
59 3k2z_A LEXA repressor; winged 94.8 0.014 4.7E-07 48.4 2.8 55 198-253 2-56 (196)
60 1i1g_A Transcriptional regulat 94.8 0.024 8.3E-07 43.9 4.1 48 199-252 2-49 (141)
61 2p5v_A Transcriptional regulat 94.8 0.046 1.6E-06 43.6 5.8 49 198-252 7-55 (162)
62 1sfx_A Conserved hypothetical 94.7 0.053 1.8E-06 39.3 5.4 52 198-255 17-69 (109)
63 2hpi_A DNA polymerase III alph 94.6 0.042 1.5E-06 57.3 6.2 75 68-145 1043-1122(1220)
64 2e1c_A Putative HTH-type trans 94.4 0.047 1.6E-06 44.3 4.9 49 198-252 24-72 (171)
65 2cyy_A Putative HTH-type trans 94.4 0.038 1.3E-06 43.5 4.3 49 198-252 4-52 (151)
66 2b0l_A GTP-sensing transcripti 94.3 0.044 1.5E-06 40.8 4.2 33 221-253 42-75 (102)
67 2dk8_A DNA-directed RNA polyme 94.3 0.045 1.5E-06 39.1 4.0 48 200-252 13-61 (81)
68 3bro_A Transcriptional regulat 94.3 0.1 3.6E-06 39.6 6.6 55 198-256 31-86 (141)
69 1p6r_A Penicillinase repressor 94.3 0.11 3.8E-06 36.3 6.1 55 197-257 5-64 (82)
70 3kdf_A Replication protein A 1 94.2 0.81 2.8E-05 35.0 11.3 80 68-160 23-108 (121)
71 3eco_A MEPR; mutlidrug efflux 94.1 0.1 3.5E-06 39.7 6.1 55 198-256 28-83 (139)
72 2x4h_A Hypothetical protein SS 94.0 0.059 2E-06 41.4 4.6 62 198-262 10-71 (139)
73 4gs3_A Single-stranded DNA-bin 93.9 0.45 1.6E-05 35.7 9.1 59 68-130 12-81 (107)
74 2nnn_A Probable transcriptiona 93.8 0.094 3.2E-06 39.8 5.4 53 198-256 35-88 (140)
75 2fbh_A Transcriptional regulat 93.8 0.16 5.5E-06 38.7 6.8 53 198-256 34-88 (146)
76 1tbx_A ORF F-93, hypothetical 93.6 0.18 6.2E-06 36.3 6.5 53 198-256 5-62 (99)
77 3bdd_A Regulatory protein MARR 93.6 0.077 2.6E-06 40.4 4.5 52 198-255 28-80 (142)
78 3neu_A LIN1836 protein; struct 93.5 0.21 7.1E-06 38.2 6.8 34 220-253 35-69 (125)
79 3bpv_A Transcriptional regulat 93.4 0.16 5.6E-06 38.3 6.2 53 198-256 26-79 (138)
80 2d1h_A ST1889, 109AA long hypo 93.4 0.13 4.5E-06 37.1 5.4 53 198-255 18-71 (109)
81 2kko_A Possible transcriptiona 93.3 0.1 3.5E-06 38.7 4.7 56 201-263 25-83 (108)
82 2wte_A CSA3; antiviral protein 93.3 0.082 2.8E-06 45.5 4.7 60 198-263 149-209 (244)
83 1l1o_C Replication protein A 7 93.3 0.27 9.2E-06 40.2 7.6 76 85-161 80-178 (181)
84 1xjv_A Protection of telomeres 93.2 0.9 3.1E-05 39.8 11.5 68 68-138 16-92 (294)
85 2pex_A Transcriptional regulat 93.2 0.1 3.4E-06 40.5 4.7 53 198-256 44-97 (153)
86 2a61_A Transcriptional regulat 93.1 0.11 3.9E-06 39.6 4.9 53 198-256 30-83 (145)
87 3tqn_A Transcriptional regulat 93.1 0.17 5.9E-06 37.9 5.8 35 221-255 32-67 (113)
88 3cdh_A Transcriptional regulat 93.1 0.25 8.7E-06 38.2 7.0 53 198-256 40-93 (155)
89 4ah6_A Aspartate--tRNA ligase, 93.1 0.14 4.6E-06 49.9 6.3 73 68-143 25-109 (617)
90 3hsr_A HTH-type transcriptiona 93.0 0.19 6.4E-06 38.5 6.0 53 198-256 33-86 (140)
91 1sr3_A APO-CCME; OB fold, beta 93.0 0.46 1.6E-05 37.1 8.1 56 68-129 29-88 (136)
92 1q1h_A TFE, transcription fact 92.8 0.091 3.1E-06 38.9 3.8 48 201-253 18-65 (110)
93 1lj9_A Transcriptional regulat 92.8 0.2 6.7E-06 38.2 5.8 53 198-256 26-79 (144)
94 1r1u_A CZRA, repressor protein 92.8 0.19 6.6E-06 36.9 5.5 55 201-262 26-83 (106)
95 4ham_A LMO2241 protein; struct 92.7 0.2 6.7E-06 38.7 5.8 53 201-253 14-70 (134)
96 2fa5_A Transcriptional regulat 92.7 0.13 4.6E-06 40.1 4.9 52 198-255 46-98 (162)
97 4gop_A Putative uncharacterize 92.7 0.29 1E-05 37.1 6.5 66 68-145 19-88 (114)
98 2gxg_A 146AA long hypothetical 92.7 0.37 1.3E-05 36.7 7.3 51 198-255 34-85 (146)
99 2oqg_A Possible transcriptiona 92.7 0.19 6.7E-06 37.0 5.5 55 201-262 21-78 (114)
100 3nrv_A Putative transcriptiona 92.7 0.14 4.9E-06 39.3 5.0 52 198-255 37-89 (148)
101 3by6_A Predicted transcription 92.7 0.27 9.3E-06 37.6 6.5 35 220-254 33-68 (126)
102 1r7j_A Conserved hypothetical 92.7 0.11 3.7E-06 38.0 3.9 43 221-264 20-62 (95)
103 3tgn_A ADC operon repressor AD 92.7 0.28 9.6E-06 37.4 6.6 52 197-255 34-86 (146)
104 1ynx_A Replication factor-A pr 92.6 0.074 2.5E-06 40.2 3.1 44 84-129 40-84 (114)
105 3deu_A Transcriptional regulat 92.6 0.22 7.4E-06 39.5 6.0 55 197-256 49-104 (166)
106 1j6q_A Cytochrome C maturation 92.6 0.63 2.2E-05 36.4 8.4 65 68-141 33-102 (136)
107 3rkx_A Biotin-[acetyl-COA-carb 92.5 0.18 6.2E-06 45.1 5.9 58 200-261 2-60 (323)
108 2frh_A SARA, staphylococcal ac 92.4 0.11 3.7E-06 39.5 3.8 55 198-256 34-89 (127)
109 2pi2_E Replication protein A 1 92.3 1.4 4.8E-05 34.6 10.2 66 68-146 44-110 (142)
110 2vn2_A DNAD, chromosome replic 92.3 0.18 6.2E-06 38.7 5.0 57 198-255 29-86 (128)
111 2xrn_A HTH-type transcriptiona 92.3 0.22 7.6E-06 42.3 6.0 53 205-262 10-63 (241)
112 1ufm_A COP9 complex subunit 4; 92.3 0.1 3.4E-06 37.5 3.2 39 219-257 28-67 (84)
113 3bj6_A Transcriptional regulat 92.3 0.24 8.3E-06 38.1 5.8 53 198-256 37-90 (152)
114 3fm5_A Transcriptional regulat 92.2 0.2 6.8E-06 38.7 5.2 54 198-256 36-90 (150)
115 3jth_A Transcription activator 92.2 0.26 8.7E-06 35.5 5.5 49 201-256 23-72 (98)
116 3g3z_A NMB1585, transcriptiona 92.2 0.27 9.3E-06 37.6 6.0 53 198-256 28-81 (145)
117 2ek5_A Predicted transcription 92.2 0.4 1.4E-05 36.9 6.8 35 220-254 26-61 (129)
118 1ku9_A Hypothetical protein MJ 92.1 0.34 1.2E-05 36.9 6.5 54 198-256 23-77 (152)
119 2y75_A HTH-type transcriptiona 92.1 0.24 8.3E-06 37.7 5.5 58 203-263 11-70 (129)
120 3f3x_A Transcriptional regulat 92.1 0.18 6.1E-06 38.6 4.8 53 198-257 34-87 (144)
121 3ech_A MEXR, multidrug resista 92.0 0.16 5.6E-06 38.8 4.5 53 198-256 34-87 (142)
122 3s2w_A Transcriptional regulat 91.9 0.23 8E-06 38.7 5.4 53 198-256 47-100 (159)
123 3oop_A LIN2960 protein; protei 91.9 0.21 7.2E-06 38.1 5.0 53 198-256 34-87 (143)
124 2fbi_A Probable transcriptiona 91.9 0.23 7.9E-06 37.6 5.2 53 198-256 33-86 (142)
125 1ub9_A Hypothetical protein PH 91.9 0.15 5E-06 36.5 3.8 47 201-253 16-62 (100)
126 3cjn_A Transcriptional regulat 91.9 0.26 9E-06 38.4 5.7 53 198-256 49-102 (162)
127 1txy_A Primosomal replication 91.9 1.8 6.3E-05 31.8 10.0 76 67-144 2-100 (104)
128 2rdp_A Putative transcriptiona 91.9 0.27 9.4E-06 37.7 5.7 53 198-256 39-92 (150)
129 1jgs_A Multiple antibiotic res 91.9 0.33 1.1E-05 36.6 6.0 53 198-256 31-84 (138)
130 2pjp_A Selenocysteine-specific 91.8 0.46 1.6E-05 36.0 6.8 52 202-260 8-59 (121)
131 1jmc_A Protein (replication pr 91.8 0.36 1.2E-05 40.9 6.8 66 68-138 139-217 (246)
132 3pqk_A Biofilm growth-associat 91.8 0.51 1.7E-05 34.2 6.8 56 201-263 23-81 (102)
133 3k0l_A Repressor protein; heli 91.7 0.26 8.7E-06 38.7 5.4 53 198-256 43-96 (162)
134 1s3j_A YUSO protein; structura 91.6 0.22 7.5E-06 38.5 4.9 53 198-256 34-87 (155)
135 2nyx_A Probable transcriptiona 91.6 0.25 8.4E-06 39.1 5.2 53 198-256 42-95 (168)
136 2qww_A Transcriptional regulat 91.6 0.24 8.1E-06 38.3 5.0 50 198-253 38-87 (154)
137 3edp_A LIN2111 protein; APC883 91.6 0.41 1.4E-05 40.6 6.8 51 202-253 14-65 (236)
138 1u2w_A CADC repressor, cadmium 91.5 0.23 7.9E-06 37.6 4.8 56 201-262 42-100 (122)
139 1on2_A Transcriptional regulat 91.5 0.11 3.8E-06 40.0 2.9 44 220-263 21-64 (142)
140 3r4k_A Transcriptional regulat 91.4 0.24 8.2E-06 42.7 5.2 53 205-262 10-63 (260)
141 2hzt_A Putative HTH-type trans 91.4 0.77 2.6E-05 33.7 7.4 58 201-265 14-78 (107)
142 3bja_A Transcriptional regulat 91.3 0.21 7.3E-06 37.6 4.4 53 198-256 30-83 (139)
143 3tqy_A Single-stranded DNA-bin 91.2 1.2 4.1E-05 35.5 8.9 79 66-146 7-114 (158)
144 2eth_A Transcriptional regulat 91.2 0.27 9.2E-06 38.1 5.0 53 198-256 41-94 (154)
145 2jsc_A Transcriptional regulat 91.1 0.31 1.1E-05 36.7 5.1 55 201-262 21-78 (118)
146 2fe3_A Peroxide operon regulat 91.1 0.45 1.5E-05 37.2 6.2 50 199-253 20-74 (145)
147 2o0y_A Transcriptional regulat 91.1 0.34 1.2E-05 41.6 5.9 51 206-262 28-79 (260)
148 1ucr_A Protein DSVD; dissimila 91.0 0.25 8.5E-06 34.7 4.0 51 200-252 2-53 (78)
149 3i71_A Ethanolamine utilizatio 91.0 0.46 1.6E-05 31.5 5.0 44 205-253 7-50 (68)
150 3nqo_A MARR-family transcripti 90.9 0.38 1.3E-05 39.0 5.8 55 198-256 38-93 (189)
151 4hbl_A Transcriptional regulat 90.9 0.25 8.5E-06 38.2 4.5 53 198-256 38-91 (149)
152 4gop_C Putative uncharacterize 90.8 0.26 9E-06 45.8 5.3 70 68-138 134-216 (444)
153 3jw4_A Transcriptional regulat 90.8 0.14 4.6E-06 39.6 2.8 55 198-256 38-93 (148)
154 1mzb_A Ferric uptake regulatio 90.6 0.58 2E-05 36.1 6.3 51 199-253 16-71 (136)
155 2o03_A Probable zinc uptake re 90.5 0.42 1.4E-05 36.7 5.4 49 200-253 10-63 (131)
156 3e6m_A MARR family transcripti 90.5 0.33 1.1E-05 38.0 4.9 53 198-256 50-103 (161)
157 3u2r_A Regulatory protein MARR 90.5 0.23 8E-06 39.2 4.0 55 198-256 43-98 (168)
158 2bv6_A MGRA, HTH-type transcri 90.3 0.29 9.8E-06 37.2 4.3 52 198-255 34-86 (142)
159 3eet_A Putative GNTR-family tr 90.3 0.46 1.6E-05 41.2 6.1 34 220-253 51-85 (272)
160 4aik_A Transcriptional regulat 90.2 0.67 2.3E-05 36.2 6.5 54 198-256 28-82 (151)
161 3koj_A Uncharacterized protein 90.2 1.5 5E-05 32.9 8.0 76 66-143 10-108 (108)
162 1uly_A Hypothetical protein PH 90.2 0.53 1.8E-05 38.8 6.1 47 200-253 19-65 (192)
163 4b8x_A SCO5413, possible MARR- 90.1 0.48 1.6E-05 36.8 5.5 55 198-256 32-87 (147)
164 2w57_A Ferric uptake regulatio 90.1 0.48 1.6E-05 37.3 5.5 51 199-253 15-70 (150)
165 1mkm_A ICLR transcriptional re 90.1 0.53 1.8E-05 40.0 6.2 54 204-262 11-64 (249)
166 2g7u_A Transcriptional regulat 90.1 0.57 1.9E-05 40.1 6.4 52 205-262 18-69 (257)
167 1okr_A MECI, methicillin resis 90.1 0.29 9.9E-06 36.5 4.0 57 197-259 6-67 (123)
168 3f8m_A GNTR-family protein tra 90.0 0.56 1.9E-05 40.0 6.3 34 220-253 34-68 (248)
169 2g9w_A Conserved hypothetical 89.9 0.66 2.2E-05 35.7 6.1 55 198-257 6-65 (138)
170 2k4b_A Transcriptional regulat 89.8 0.26 8.7E-06 36.4 3.5 55 197-257 31-90 (99)
171 3kp7_A Transcriptional regulat 89.8 0.3 1E-05 37.7 4.0 49 198-253 35-83 (151)
172 1z6r_A MLC protein; transcript 89.7 0.41 1.4E-05 43.6 5.5 45 203-253 18-62 (406)
173 2wv0_A YVOA, HTH-type transcri 89.6 0.6 2.1E-05 39.7 6.1 34 220-253 32-66 (243)
174 3f6o_A Probable transcriptiona 89.5 0.56 1.9E-05 35.1 5.3 55 201-262 18-75 (118)
175 2h09_A Transcriptional regulat 89.4 0.39 1.3E-05 37.5 4.5 43 220-262 53-95 (155)
176 3mq0_A Transcriptional repress 89.4 0.34 1.1E-05 42.1 4.5 53 205-262 34-86 (275)
177 2hr3_A Probable transcriptiona 89.3 0.37 1.3E-05 36.8 4.2 54 198-256 32-86 (147)
178 1fx7_A Iron-dependent represso 89.3 0.19 6.4E-06 42.4 2.7 61 198-263 3-66 (230)
179 3bwg_A Uncharacterized HTH-typ 89.2 0.69 2.3E-05 39.2 6.2 52 201-253 9-61 (239)
180 2xig_A Ferric uptake regulatio 89.1 0.69 2.4E-05 36.4 5.8 50 199-253 25-79 (150)
181 1bia_A BIRA bifunctional prote 89.1 0.85 2.9E-05 40.5 7.0 55 201-261 5-60 (321)
182 1v4r_A Transcriptional repress 89.0 0.32 1.1E-05 35.5 3.5 35 220-254 33-68 (102)
183 2pg4_A Uncharacterized protein 88.9 0.53 1.8E-05 33.6 4.5 34 220-253 29-63 (95)
184 3boq_A Transcriptional regulat 88.8 0.31 1.1E-05 37.9 3.5 53 198-256 44-98 (160)
185 1z91_A Organic hydroperoxide r 88.8 0.42 1.4E-05 36.4 4.2 52 198-255 37-89 (147)
186 2v79_A DNA replication protein 88.6 0.36 1.2E-05 37.6 3.7 55 198-253 29-83 (135)
187 3k8a_A Putative primosomal rep 88.6 4.7 0.00016 29.7 9.7 73 68-144 8-101 (103)
188 1z05_A Transcriptional regulat 88.5 0.47 1.6E-05 43.6 5.1 45 203-253 41-85 (429)
189 1j5y_A Transcriptional regulat 88.5 0.44 1.5E-05 38.8 4.4 46 202-252 22-68 (187)
190 2l02_A Uncharacterized protein 88.5 0.75 2.6E-05 32.7 4.9 48 203-256 10-58 (82)
191 1sd4_A Penicillinase repressor 88.4 0.77 2.6E-05 34.2 5.4 56 197-258 6-66 (126)
192 1qvc_A Single stranded DNA bin 88.4 1.4 4.8E-05 34.6 7.1 64 67-132 5-90 (145)
193 3t8r_A Staphylococcus aureus C 88.4 0.84 2.9E-05 35.6 5.7 49 202-253 12-60 (143)
194 3hrs_A Metalloregulator SCAR; 88.4 0.67 2.3E-05 38.7 5.5 45 219-263 18-62 (214)
195 2qvo_A Uncharacterized protein 88.3 0.34 1.2E-05 34.8 3.1 63 199-263 10-75 (95)
196 1hw1_A FADR, fatty acid metabo 88.2 1.1 3.7E-05 37.5 6.8 36 218-253 27-63 (239)
197 2f2e_A PA1607; transcription f 88.2 0.86 3E-05 35.6 5.7 56 201-263 24-84 (146)
198 3stb_C RNA-editing complex pro 88.1 0.76 2.6E-05 36.4 5.2 73 57-130 34-120 (148)
199 4fx0_A Probable transcriptiona 88.1 0.79 2.7E-05 35.6 5.4 58 198-256 30-87 (148)
200 2ia2_A Putative transcriptiona 88.0 0.68 2.3E-05 39.8 5.4 52 205-262 25-76 (265)
201 1z7u_A Hypothetical protein EF 87.9 0.61 2.1E-05 34.6 4.5 49 201-256 22-72 (112)
202 3mwm_A ZUR, putative metal upt 87.9 0.89 3E-05 35.3 5.6 50 199-253 12-66 (139)
203 1jmc_A Protein (replication pr 87.9 0.46 1.6E-05 40.3 4.2 59 69-129 20-88 (246)
204 2kct_A Cytochrome C-type bioge 87.8 6.3 0.00022 28.6 10.2 66 68-141 9-81 (94)
205 1r1t_A Transcriptional repress 87.8 1.8 6E-05 32.7 7.1 49 201-256 46-95 (122)
206 3fhw_A Primosomal replication 87.8 5.1 0.00017 30.2 9.6 46 97-145 49-97 (115)
207 2fbk_A Transcriptional regulat 87.7 0.22 7.4E-06 40.0 1.9 56 198-256 66-122 (181)
208 1fse_A GERE; helix-turn-helix 87.6 1.4 4.8E-05 29.4 5.9 42 197-246 10-51 (74)
209 1stz_A Heat-inducible transcri 87.5 0.78 2.7E-05 41.2 5.7 49 199-253 15-70 (338)
210 2vw9_A Single-stranded DNA bin 87.5 1.4 4.9E-05 34.0 6.5 49 96-146 50-107 (134)
211 4gop_C Putative uncharacterize 87.4 1.2 4E-05 41.4 7.0 75 85-161 345-443 (444)
212 3ic7_A Putative transcriptiona 87.3 0.22 7.5E-06 38.1 1.7 53 201-254 15-68 (126)
213 3f6v_A Possible transcriptiona 86.8 0.82 2.8E-05 36.1 4.8 56 200-262 57-115 (151)
214 2fxa_A Protease production reg 86.7 0.69 2.3E-05 38.2 4.6 53 198-256 45-98 (207)
215 1tc3_C Protein (TC3 transposas 86.7 0.81 2.8E-05 27.6 3.9 40 202-249 10-49 (51)
216 3vdy_A SSB, single-stranded DN 86.6 2.5 8.4E-05 31.6 7.3 79 67-147 5-109 (116)
217 2vxz_A Pyrsv_GP04; viral prote 86.6 1.1 3.7E-05 35.6 5.3 46 201-253 11-56 (165)
218 2l01_A Uncharacterized protein 86.6 2 6.7E-05 30.2 6.1 46 202-253 11-57 (77)
219 3eyy_A Putative iron uptake re 86.6 0.7 2.4E-05 36.1 4.3 49 199-253 17-70 (145)
220 3ulq_B Transcriptional regulat 86.5 1.4 4.8E-05 31.5 5.6 43 197-247 28-70 (90)
221 3rn5_A Interferon-inducible pr 86.4 5.8 0.0002 32.8 9.7 58 76-138 131-189 (208)
222 1jb7_A Telomere-binding protei 86.4 2.4 8.2E-05 40.1 8.6 68 68-138 50-138 (495)
223 2fsw_A PG_0823 protein; alpha- 86.1 1.3 4.5E-05 32.4 5.4 55 202-263 26-87 (107)
224 2w48_A Sorbitol operon regulat 86.1 0.72 2.4E-05 40.7 4.6 36 220-255 20-56 (315)
225 2qq9_A Diphtheria toxin repres 86.1 0.25 8.4E-06 41.7 1.5 62 198-263 3-66 (226)
226 2lkp_A Transcriptional regulat 86.0 1.5 5.3E-05 32.4 5.9 50 201-257 32-82 (119)
227 1je8_A Nitrate/nitrite respons 85.8 1.6 5.5E-05 30.4 5.5 42 197-246 20-61 (82)
228 1v1q_A Primosomal replication 85.8 7.5 0.00026 30.1 9.8 33 97-131 67-99 (134)
229 3en2_A Probable primosomal rep 85.7 1.9 6.5E-05 31.8 6.0 34 97-133 50-85 (101)
230 1wi9_A Protein C20ORF116 homol 85.6 0.62 2.1E-05 32.3 3.0 51 201-257 7-58 (72)
231 3eiv_A Single-stranded DNA-bin 85.5 3.7 0.00013 34.0 8.4 75 67-143 4-108 (199)
232 1se8_A Single-strand binding p 85.5 3.5 0.00012 36.4 8.7 77 67-146 129-233 (301)
233 2obp_A Putative DNA-binding pr 85.4 2.8 9.5E-05 30.6 6.7 61 197-257 12-73 (96)
234 3lwf_A LIN1550 protein, putati 85.3 1.4 4.7E-05 35.2 5.5 49 202-253 28-76 (159)
235 3afp_A Single-stranded DNA-bin 85.1 1.6 5.5E-05 35.2 5.8 61 67-129 4-85 (168)
236 4a5n_A Uncharacterized HTH-typ 85.1 3 0.0001 32.1 7.2 57 201-264 26-89 (131)
237 4ets_A Ferric uptake regulatio 85.1 1.9 6.4E-05 34.4 6.2 50 199-253 31-87 (162)
238 1lva_A Selenocysteine-specific 84.7 1.5 5.1E-05 37.7 5.8 55 202-260 142-196 (258)
239 2gqq_A Leucine-responsive regu 84.7 0.1 3.6E-06 41.6 -1.5 49 199-253 11-59 (163)
240 3u1d_A Uncharacterized protein 84.4 1.6 5.5E-05 34.7 5.4 49 201-253 29-78 (151)
241 1gm5_A RECG; helicase, replica 84.2 0.87 3E-05 45.5 4.7 66 68-137 166-239 (780)
242 2hs5_A Putative transcriptiona 84.0 1.6 5.4E-05 36.8 5.6 53 201-253 28-83 (239)
243 1z9f_A Single-strand binding p 84.0 4 0.00014 32.3 7.6 78 67-146 16-121 (153)
244 3df8_A Possible HXLR family tr 83.6 2.4 8.1E-05 31.4 5.8 58 201-263 27-87 (111)
245 1p4x_A Staphylococcal accessor 83.6 1.6 5.5E-05 37.4 5.5 56 197-256 154-210 (250)
246 3c57_A Two component transcrip 83.0 2.4 8.3E-05 30.3 5.6 42 197-246 26-67 (95)
247 2hoe_A N-acetylglucosamine kin 83.0 0.86 2.9E-05 41.1 3.7 43 204-253 23-65 (380)
248 1ylf_A RRF2 family protein; st 82.9 1.4 4.8E-05 34.4 4.5 43 220-262 29-72 (149)
249 4a0z_A Transcription factor FA 82.8 0.95 3.2E-05 37.3 3.6 44 201-250 12-55 (190)
250 1yyv_A Putative transcriptiona 82.6 1.8 6.2E-05 33.1 5.0 55 202-263 36-97 (131)
251 1p4w_A RCSB; solution structur 82.4 2 6.7E-05 31.4 4.9 42 197-246 33-74 (99)
252 1hsj_A Fusion protein consisti 82.3 1.3 4.5E-05 40.8 4.9 56 197-256 400-456 (487)
253 1se8_A Single-strand binding p 82.2 4 0.00014 36.0 7.7 77 67-145 5-110 (301)
254 2fxq_A Single-strand binding p 82.1 5.9 0.0002 34.0 8.6 78 66-146 127-229 (264)
255 3cuq_B Vacuolar protein-sortin 82.0 2 6.9E-05 36.1 5.4 50 198-253 151-200 (218)
256 1p4x_A Staphylococcal accessor 81.9 1.4 4.8E-05 37.7 4.5 55 198-256 31-86 (250)
257 2p7v_B Sigma-70, RNA polymeras 81.5 5.1 0.00018 26.4 6.5 47 197-246 4-50 (68)
258 1ku3_A Sigma factor SIGA; heli 81.5 4.4 0.00015 27.2 6.2 47 197-246 9-59 (73)
259 3c7j_A Transcriptional regulat 81.4 3.5 0.00012 34.6 6.8 36 218-253 46-81 (237)
260 2jpc_A SSRB; DNA binding prote 81.2 2.6 9E-05 27.0 4.8 36 203-246 3-38 (61)
261 3ulp_A Single-strand binding p 81.2 2.6 8.8E-05 32.0 5.4 66 65-132 4-92 (124)
262 2o0m_A Transcriptional regulat 81.2 0.3 1E-05 43.8 0.0 48 200-253 19-66 (345)
263 4dam_A Single-stranded DNA-bin 81.1 1.9 6.4E-05 33.2 4.5 63 65-129 13-95 (128)
264 2p4w_A Transcriptional regulat 80.9 2.5 8.4E-05 35.0 5.5 48 201-255 15-63 (202)
265 4hik_A Protection of telomeres 80.6 4.8 0.00016 31.6 6.8 55 68-124 15-92 (143)
266 3rlo_A Gamma-interferon-induci 80.5 5.3 0.00018 32.9 7.2 58 76-138 127-186 (204)
267 1bja_A Transcription regulator 80.4 2.8 9.7E-05 30.6 5.0 58 197-262 12-71 (95)
268 3k69_A Putative transcription 80.2 1.5 5.3E-05 34.9 3.9 49 202-254 13-61 (162)
269 2rnj_A Response regulator prot 80.1 2.6 8.8E-05 29.8 4.7 42 197-246 28-69 (91)
270 1x3u_A Transcriptional regulat 80.1 3 0.0001 28.2 5.0 41 198-246 16-56 (79)
271 3k7u_C MP18 RNA editing comple 79.3 3.4 0.00012 32.6 5.6 61 67-129 6-85 (148)
272 3lgj_A Single-stranded DNA-bin 79.2 3.7 0.00013 33.1 5.9 62 66-129 22-104 (169)
273 2o8x_A Probable RNA polymerase 79.0 4.9 0.00017 26.2 5.7 42 197-245 14-55 (70)
274 3sxy_A Transcriptional regulat 78.7 2.9 9.9E-05 34.4 5.3 36 218-253 32-67 (218)
275 2p8t_A Hypothetical protein PH 78.7 2.2 7.4E-05 35.5 4.4 47 202-253 16-62 (200)
276 3iuo_A ATP-dependent DNA helic 78.6 3.3 0.00011 31.4 5.2 42 201-250 20-61 (122)
277 1u5t_A Appears to BE functiona 78.5 2.9 9.9E-05 35.6 5.2 51 197-253 163-213 (233)
278 1tty_A Sigma-A, RNA polymerase 78.1 6 0.0002 27.6 6.2 45 197-244 17-61 (87)
279 3ihu_A Transcriptional regulat 77.8 3.2 0.00011 34.3 5.3 53 201-253 16-71 (222)
280 3cuq_A Vacuolar-sorting protei 77.4 3.3 0.00011 35.2 5.3 51 197-253 150-200 (234)
281 2fxq_A Single-strand binding p 77.2 7.7 0.00026 33.2 7.7 80 67-148 5-111 (264)
282 2ra5_A Putative transcriptiona 77.2 0.69 2.3E-05 39.4 1.0 33 221-253 39-72 (247)
283 3pgz_A Single-stranded DNA-bin 76.5 3.9 0.00013 33.7 5.4 68 59-129 19-107 (193)
284 3hug_A RNA polymerase sigma fa 76.5 5.4 0.00018 28.1 5.6 41 197-244 36-76 (92)
285 1xd7_A YWNA; structural genomi 76.4 4.5 0.00015 31.3 5.5 45 203-253 11-55 (145)
286 2ip2_A Probable phenazine-spec 76.3 4.4 0.00015 35.3 6.1 54 202-262 29-82 (334)
287 2qlz_A Transcription factor PF 75.9 2.3 8E-05 36.0 4.0 49 201-256 12-61 (232)
288 1jhf_A LEXA repressor; LEXA SO 75.8 1.6 5.5E-05 35.5 2.9 52 198-252 3-57 (202)
289 3ull_A DNA binding protein; DN 75.2 13 0.00043 28.3 7.8 80 66-147 13-127 (132)
290 3i53_A O-methyltransferase; CO 74.9 5.8 0.0002 34.5 6.5 56 201-263 25-80 (332)
291 3dp7_A SAM-dependent methyltra 74.7 3.8 0.00013 36.5 5.3 55 202-262 36-90 (363)
292 2di3_A Bacterial regulatory pr 74.5 3.9 0.00013 34.1 5.0 35 219-253 25-60 (239)
293 1eqq_A Single stranded DNA bin 74.1 1.2 4.1E-05 36.3 1.6 61 67-129 6-86 (178)
294 3lst_A CALO1 methyltransferase 72.4 5.2 0.00018 35.2 5.6 42 221-263 55-96 (348)
295 1zyb_A Transcription regulator 72.3 6.9 0.00024 31.9 6.0 52 201-252 163-217 (232)
296 2v9v_A Selenocysteine-specific 72.1 4.8 0.00016 30.3 4.6 55 199-253 64-121 (135)
297 1ft9_A Carbon monoxide oxidati 71.6 4.6 0.00016 32.7 4.7 31 222-252 164-194 (222)
298 2v7f_A RPS19, RPS19E SSU ribos 71.4 1.8 6.1E-05 34.3 2.0 30 224-253 70-113 (150)
299 3maj_A DNA processing chain A; 71.2 7.3 0.00025 35.5 6.3 55 199-260 326-380 (382)
300 4esf_A PADR-like transcription 71.1 6.1 0.00021 29.5 4.9 57 201-264 11-81 (117)
301 1xma_A Predicted transcription 71.1 3.7 0.00013 32.0 3.8 48 201-255 41-97 (145)
302 3t72_q RNA polymerase sigma fa 71.0 7 0.00024 28.4 5.1 43 198-243 19-61 (99)
303 2zkz_A Transcriptional repress 70.9 3.4 0.00012 29.6 3.3 49 201-256 27-76 (99)
304 2r3s_A Uncharacterized protein 70.1 6.6 0.00023 34.0 5.7 53 202-262 27-79 (335)
305 1tw3_A COMT, carminomycin 4-O- 69.7 7.2 0.00025 34.2 5.9 55 202-263 40-94 (360)
306 4dni_A Fusion protein of RNA-e 69.2 9 0.00031 33.0 6.1 61 66-129 145-225 (257)
307 1w7p_D VPS36P, YLR417W; ESCRT- 69.1 6 0.0002 38.0 5.4 48 200-253 493-547 (566)
308 3go5_A Multidomain protein wit 68.7 8.6 0.00029 33.5 6.0 59 197-255 220-279 (285)
309 3txn_A 26S proteasome regulato 68.7 3 0.0001 38.2 3.2 37 220-256 315-352 (394)
310 2dql_A PEX protein; circadian 68.0 7.8 0.00027 28.8 4.9 61 201-265 21-95 (115)
311 2oq0_A Gamma-interferon-induci 67.8 50 0.0017 27.2 9.9 54 79-137 138-192 (206)
312 4esb_A Transcriptional regulat 67.5 4.4 0.00015 30.2 3.4 48 201-255 9-63 (115)
313 3cta_A Riboflavin kinase; stru 67.1 5.3 0.00018 33.2 4.2 55 201-255 7-62 (230)
314 3mzy_A RNA polymerase sigma-H 66.6 9.3 0.00032 28.8 5.3 39 198-244 109-147 (164)
315 1qzz_A RDMB, aclacinomycin-10- 66.5 7.9 0.00027 34.1 5.5 54 202-262 37-92 (374)
316 1x19_A CRTF-related protein; m 66.2 12 0.00042 32.8 6.7 53 202-262 52-104 (359)
317 2oz6_A Virulence factor regula 65.9 5.9 0.0002 31.4 4.1 32 221-252 164-195 (207)
318 3szt_A QCSR, quorum-sensing co 65.9 9.8 0.00033 31.7 5.7 43 197-247 174-216 (237)
319 3l7w_A Putative uncharacterize 65.8 7.9 0.00027 28.2 4.5 56 201-263 9-75 (108)
320 2p5k_A Arginine repressor; DNA 65.7 9.2 0.00032 24.5 4.4 38 206-253 10-52 (64)
321 3ryp_A Catabolite gene activat 65.6 6.1 0.00021 31.3 4.2 32 221-252 167-198 (210)
322 3f8b_A Transcriptional regulat 65.4 9.4 0.00032 28.3 4.9 56 202-264 13-84 (116)
323 4ev0_A Transcription regulator 65.3 6.1 0.00021 31.5 4.1 52 201-252 141-194 (216)
324 3eyi_A Z-DNA-binding protein 1 65.1 8.8 0.0003 26.3 4.1 52 198-256 6-59 (72)
325 2zcw_A TTHA1359, transcription 65.0 6.4 0.00022 31.2 4.2 31 222-252 147-177 (202)
326 2lfw_A PHYR sigma-like domain; 64.8 8.5 0.00029 29.7 4.8 40 197-243 92-131 (157)
327 3gwz_A MMCR; methyltransferase 64.6 6.4 0.00022 35.0 4.5 42 221-262 71-113 (369)
328 4b4t_P 26S proteasome regulato 64.2 2.9 0.0001 38.7 2.2 37 220-256 358-395 (445)
329 3hhh_A Transcriptional regulat 64.2 9.1 0.00031 28.5 4.6 57 201-264 13-83 (116)
330 3dv8_A Transcriptional regulat 64.0 6.7 0.00023 31.3 4.2 31 221-251 169-199 (220)
331 3iwz_A CAP-like, catabolite ac 63.5 6.9 0.00024 31.5 4.2 31 222-252 188-218 (230)
332 2xzm_8 RPS25E,; ribosome, tran 63.4 6.9 0.00024 30.5 3.8 49 202-253 45-95 (143)
333 1xsv_A Hypothetical UPF0122 pr 63.0 15 0.00051 27.1 5.6 39 199-244 26-64 (113)
334 3e97_A Transcriptional regulat 62.8 7.2 0.00025 31.5 4.2 32 221-252 175-206 (231)
335 3lmm_A Uncharacterized protein 62.6 1.6 5.4E-05 42.2 0.0 47 201-253 516-562 (583)
336 3b02_A Transcriptional regulat 62.1 5.7 0.0002 31.4 3.4 31 222-252 140-170 (195)
337 3u50_C Telomerase-associated p 62.0 7.4 0.00025 31.4 3.9 59 86-144 77-168 (172)
338 2esh_A Conserved hypothetical 61.9 5.4 0.00018 29.6 2.9 56 201-263 13-84 (118)
339 2gau_A Transcriptional regulat 61.8 7.9 0.00027 31.3 4.2 33 220-252 179-211 (232)
340 2ga1_A Protein of unknown func 61.6 11 0.00038 27.9 4.6 35 205-247 56-91 (106)
341 1l3l_A Transcriptional activat 61.6 15 0.0005 30.4 5.9 42 197-246 172-213 (234)
342 3la7_A Global nitrogen regulat 61.5 7.7 0.00026 31.9 4.2 32 221-252 193-224 (243)
343 4b4t_R RPN7, 26S proteasome re 60.9 4 0.00014 37.5 2.4 38 219-256 345-383 (429)
344 2fmy_A COOA, carbon monoxide o 60.8 8.1 0.00028 31.0 4.1 32 221-252 167-198 (220)
345 2qlz_A Transcription factor PF 60.5 11 0.00039 31.7 5.1 45 202-253 166-210 (232)
346 2q0o_A Probable transcriptiona 60.2 14 0.00047 30.6 5.5 41 198-246 175-215 (236)
347 3d0s_A Transcriptional regulat 60.0 8.5 0.00029 31.0 4.1 32 221-252 177-208 (227)
348 4dni_A Fusion protein of RNA-e 58.5 34 0.0012 29.3 7.7 79 65-145 28-128 (257)
349 3lsg_A Two-component response 58.4 15 0.00051 26.0 4.8 42 201-245 2-43 (103)
350 3k81_C MP18 RNA editing comple 58.0 11 0.00038 30.2 4.3 62 66-129 21-101 (164)
351 1t6s_A Conserved hypothetical 58.0 9 0.00031 30.6 3.7 29 219-247 20-50 (162)
352 3kcc_A Catabolite gene activat 57.9 9.5 0.00033 31.8 4.2 31 222-252 218-248 (260)
353 2l0k_A Stage III sporulation p 57.8 8.5 0.00029 27.7 3.3 36 202-244 8-43 (93)
354 2e1n_A PEX, period extender; c 57.7 14 0.00047 28.5 4.7 60 202-265 35-107 (138)
355 1xjv_A Protection of telomeres 57.7 82 0.0028 27.1 10.3 56 68-126 155-239 (294)
356 3e6c_C CPRK, cyclic nucleotide 57.5 9.9 0.00034 31.3 4.2 32 221-252 177-208 (250)
357 3dkw_A DNR protein; CRP-FNR, H 57.4 7.2 0.00024 31.3 3.2 33 220-252 177-209 (227)
358 2zfw_A PEX; five alpha-helices 56.6 12 0.0004 29.3 4.2 54 205-265 48-117 (148)
359 1or7_A Sigma-24, RNA polymeras 56.3 16 0.00056 28.5 5.1 40 198-244 140-179 (194)
360 1fsh_A Dishevelled-1; three-he 56.3 14 0.00049 27.1 4.4 37 224-260 57-96 (105)
361 1s7o_A Hypothetical UPF0122 pr 55.7 17 0.00058 26.9 4.8 40 198-244 22-61 (113)
362 1jko_C HIN recombinase, DNA-in 55.2 15 0.00051 21.9 3.8 34 203-244 11-44 (52)
363 2x48_A CAG38821; archeal virus 54.8 11 0.00038 23.4 3.2 24 220-243 30-53 (55)
364 1pdn_C Protein (PRD paired); p 54.3 18 0.0006 26.1 4.7 42 201-250 21-62 (128)
365 3lmm_A Uncharacterized protein 54.2 11 0.00036 36.3 4.2 48 200-253 429-481 (583)
366 3u5c_Z RP45, S31, YS23, 40S ri 54.1 7.1 0.00024 29.1 2.3 37 219-255 57-93 (108)
367 4a6d_A Hydroxyindole O-methylt 53.9 21 0.00073 31.4 6.0 57 201-262 28-87 (353)
368 3qp6_A CVIR transcriptional re 53.3 21 0.00072 30.3 5.7 42 197-246 196-237 (265)
369 1rp3_A RNA polymerase sigma fa 52.5 21 0.00073 28.7 5.4 40 197-243 186-225 (239)
370 2b29_A Replication protein A 7 52.2 72 0.0025 23.9 9.2 64 83-146 42-107 (123)
371 3fx3_A Cyclic nucleotide-bindi 52.1 18 0.00062 29.2 4.9 37 222-260 179-215 (237)
372 2bgc_A PRFA; bacterial infecti 51.7 12 0.00042 30.5 3.7 32 221-252 169-201 (238)
373 3pfi_A Holliday junction ATP-d 51.6 20 0.00069 30.9 5.4 52 198-253 260-312 (338)
374 3c3w_A Two component transcrip 51.4 24 0.00081 28.4 5.5 41 198-246 149-189 (225)
375 3clo_A Transcriptional regulat 51.2 24 0.0008 29.6 5.6 41 197-245 196-236 (258)
376 1o5l_A Transcriptional regulat 51.1 3.5 0.00012 33.3 0.3 31 221-251 164-194 (213)
377 4b4t_Q 26S proteasome regulato 50.9 6.9 0.00024 34.3 2.2 37 220-256 355-392 (434)
378 3htu_A Vacuolar protein-sortin 50.7 42 0.0014 23.4 5.8 52 200-253 8-67 (79)
379 3kf8_B Protein TEN1; OB fold; 50.6 79 0.0027 23.9 10.1 87 67-160 23-114 (123)
380 3f2g_A Alkylmercury lyase; MER 49.6 25 0.00085 29.5 5.3 40 201-246 22-61 (220)
381 4g6q_A Putative uncharacterize 49.1 20 0.00069 28.7 4.6 47 200-253 22-69 (182)
382 2k6x_A Sigma-A, RNA polymerase 48.5 12 0.00041 25.4 2.7 51 199-253 4-61 (72)
383 2ns0_A Hypothetical protein; r 48.5 32 0.0011 24.4 4.9 49 201-252 7-60 (85)
384 1a04_A Nitrate/nitrite respons 48.4 27 0.00094 27.5 5.4 41 198-246 154-194 (215)
385 3elk_A Putative transcriptiona 48.3 7.9 0.00027 28.9 1.9 48 201-255 14-68 (117)
386 3dfg_A Xcrecx, regulatory prot 48.2 15 0.00052 28.9 3.7 46 199-251 16-64 (162)
387 3mcz_A O-methyltransferase; ad 48.2 26 0.0009 30.4 5.6 41 221-262 56-96 (352)
388 3o2p_E Cell division control p 48.0 21 0.0007 25.5 3.9 57 201-259 23-84 (88)
389 1zg3_A Isoflavanone 4'-O-methy 47.9 18 0.00063 31.7 4.5 56 202-262 31-99 (358)
390 3ri2_A Transcriptional regulat 47.9 27 0.00092 26.2 4.9 58 202-264 22-88 (123)
391 2xvs_A Tetratricopeptide repea 47.8 62 0.0021 25.8 7.1 69 37-123 57-128 (166)
392 2v9v_A Selenocysteine-specific 46.8 32 0.0011 25.5 5.2 47 204-255 5-51 (135)
393 3l4g_A Phenylalanyl-tRNA synth 46.1 4.3 0.00015 38.5 0.0 60 201-265 5-67 (508)
394 2gmg_A Hypothetical protein PF 45.9 23 0.00078 26.2 4.0 40 200-246 10-53 (105)
395 3p9c_A Caffeic acid O-methyltr 45.9 21 0.00071 31.7 4.6 59 201-263 40-111 (364)
396 1cf7_A Protein (transcription 45.3 27 0.00093 24.1 4.1 60 197-260 10-70 (76)
397 2lky_A Uncharacterized protein 45.0 29 0.00099 25.9 4.4 48 199-250 6-58 (112)
398 2k9l_A RNA polymerase sigma fa 44.6 33 0.0011 23.4 4.5 25 222-246 49-73 (76)
399 3dpl_C Cullin-5; ubiquitin, NE 44.4 24 0.00083 31.8 4.8 46 199-248 197-242 (382)
400 1u5t_B Defective in vacuolar p 44.3 9.3 0.00032 30.7 1.8 48 201-253 99-152 (169)
401 3oio_A Transcriptional regulat 44.3 40 0.0014 24.1 5.2 41 201-245 7-47 (113)
402 1fp2_A Isoflavone O-methyltran 43.8 19 0.00066 31.5 4.0 56 202-262 37-97 (352)
403 3mkl_A HTH-type transcriptiona 43.5 44 0.0015 24.2 5.4 40 201-244 7-46 (120)
404 3klo_A Transcriptional regulat 43.1 40 0.0014 26.9 5.6 42 198-247 159-200 (225)
405 1k78_A Paired box protein PAX5 43.0 31 0.0011 26.0 4.7 42 201-250 36-77 (149)
406 2ozu_A Histone acetyltransfera 42.9 19 0.00065 31.3 3.6 40 202-245 199-238 (284)
407 4ad9_A Lactb2, beta-lactamase- 42.7 50 0.0017 27.7 6.4 56 203-262 222-288 (289)
408 2qc0_A Uncharacterized protein 42.3 15 0.00052 33.0 3.1 44 204-253 300-343 (373)
409 2k9s_A Arabinose operon regula 40.9 44 0.0015 23.6 5.0 41 202-245 4-44 (107)
410 3e3v_A Regulatory protein RECX 40.9 19 0.00064 28.9 3.1 44 201-251 19-65 (177)
411 1u78_A TC3 transposase, transp 40.7 35 0.0012 25.1 4.5 40 202-249 11-50 (141)
412 1ug2_A 2610100B20RIK gene prod 39.5 54 0.0018 23.6 4.9 43 201-247 39-82 (95)
413 3mn2_A Probable ARAC family tr 39.0 34 0.0012 24.3 4.1 40 202-245 3-42 (108)
414 1ldj_A Cullin homolog 1, CUL-1 38.7 37 0.0013 33.6 5.5 48 199-252 587-634 (760)
415 1fr3_A MOP, molybdate/tungstat 38.7 73 0.0025 20.1 6.4 50 71-124 8-57 (67)
416 3tdu_C Cullin-1, CUL-1; E2:E3, 38.0 26 0.00089 24.2 3.1 23 231-253 43-65 (77)
417 2hgc_A YJCQ protein; SR346, st 38.0 20 0.00068 26.3 2.6 26 228-253 23-48 (102)
418 1fp1_D Isoliquiritigenin 2'-O- 37.9 26 0.00089 30.9 3.9 60 202-263 45-118 (372)
419 1p2f_A Response regulator; DRR 37.9 34 0.0012 27.1 4.3 45 198-246 145-192 (220)
420 1yio_A Response regulatory pro 37.6 56 0.0019 25.4 5.6 41 198-246 142-182 (208)
421 3iz6_V 40S ribosomal protein S 37.3 6.2 0.00021 29.4 -0.3 36 220-255 59-94 (108)
422 2k9m_A RNA polymerase sigma fa 36.9 82 0.0028 23.8 6.1 44 200-246 18-64 (130)
423 2z99_A Putative uncharacterize 36.5 28 0.00096 29.1 3.6 29 219-247 28-56 (219)
424 1rr7_A Middle operon regulator 36.3 32 0.0011 26.1 3.6 27 221-247 92-118 (129)
425 3e0j_A DNA polymerase subunit 35.7 1.5E+02 0.0051 27.6 8.8 36 87-129 139-174 (476)
426 3d5l_A Regulatory protein RECX 35.5 30 0.001 28.6 3.7 49 201-259 62-113 (221)
427 1jb7_A Telomere-binding protei 35.5 1.3E+02 0.0045 28.1 8.5 54 68-126 222-276 (495)
428 1hst_A Histone H5; chromosomal 35.4 34 0.0012 24.3 3.4 51 200-253 8-65 (90)
429 1yg2_A Gene activator APHA; vi 35.3 28 0.00095 27.6 3.3 33 232-264 34-74 (179)
430 1svd_M Ribulose bisphosphate c 35.1 32 0.0011 25.6 3.3 30 232-261 21-53 (110)
431 2cpg_A REPA protein, transcrip 34.7 49 0.0017 19.5 3.7 24 224-247 17-41 (45)
432 2co5_A Viral protein F93; vira 34.7 44 0.0015 24.0 4.0 63 200-264 8-76 (99)
433 3oou_A LIN2118 protein; protei 34.6 47 0.0016 23.5 4.2 41 201-245 5-45 (108)
434 3h5n_A MCCB protein; ubiquitin 34.3 39 0.0013 30.0 4.4 33 221-253 50-83 (353)
435 1ust_A Histone H1; DNA binding 34.0 68 0.0023 22.8 4.9 51 200-253 8-68 (93)
436 1bl0_A Protein (multiple antib 33.8 51 0.0017 24.3 4.4 41 201-245 11-51 (129)
437 3to7_A Histone acetyltransfera 33.7 28 0.00097 30.1 3.2 40 201-245 193-232 (276)
438 1rbl_M Ribulose 1,5 bisphospha 33.4 30 0.001 25.7 2.9 30 232-261 19-51 (109)
439 2jn6_A Protein CGL2762, transp 33.3 63 0.0021 22.4 4.7 43 201-249 9-51 (97)
440 3u4z_A Telomerase-associated p 33.3 1.2E+02 0.0042 21.1 9.2 68 68-137 13-83 (109)
441 3kfw_X Uncharacterized protein 32.8 87 0.003 26.5 6.2 57 202-263 5-64 (247)
442 3kf6_B Protein TEN1; OB fold, 32.8 1.5E+02 0.005 21.8 8.5 79 43-145 9-87 (105)
443 2gwr_A DNA-binding response re 32.7 57 0.002 26.2 5.0 44 198-245 153-201 (238)
444 3zxw_B Ribulose bisphosphate c 32.7 31 0.0011 26.0 2.9 30 232-261 18-50 (118)
445 3n0r_A Response regulator; sig 32.5 88 0.003 26.5 6.3 53 198-257 111-169 (286)
446 2elh_A CG11849-PA, LD40883P; s 32.4 63 0.0021 22.1 4.4 38 201-246 26-63 (87)
447 2oqr_A Sensory transduction pr 32.1 43 0.0015 26.6 4.1 45 198-246 156-205 (230)
448 1uhm_A Histone H1, histone HHO 31.9 48 0.0016 22.7 3.7 51 200-253 5-65 (78)
449 2ou2_A Histone acetyltransfera 31.4 45 0.0015 28.9 4.1 45 202-246 192-237 (280)
450 2pq8_A Probable histone acetyl 31.2 37 0.0013 29.4 3.6 39 202-245 194-232 (278)
451 3kor_A Possible Trp repressor; 31.0 49 0.0017 24.9 3.8 27 220-246 74-100 (119)
452 3g2b_A Coenzyme PQQ synthesis 30.6 50 0.0017 23.6 3.7 46 198-251 40-93 (95)
453 2jqo_A Hypothetical protein YO 30.5 1.6E+02 0.0055 21.6 6.4 56 67-126 11-82 (108)
454 2q1z_A RPOE, ECF SIGE; ECF sig 30.2 15 0.0005 28.6 0.8 40 198-244 135-174 (184)
455 3mxn_A RECQ-mediated genome in 30.1 86 0.0029 24.8 5.2 37 67-103 37-79 (157)
456 2kvc_A Putative uncharacterize 29.8 37 0.0013 24.9 2.9 47 200-250 5-56 (103)
457 2pbi_A Regulator of G-protein 29.7 56 0.0019 30.0 4.7 37 224-260 58-97 (424)
458 2glo_A Brinker CG9653-PA; prot 29.0 56 0.0019 20.5 3.4 35 201-243 9-47 (59)
459 1uss_A Histone H1; DNA binding 29.0 79 0.0027 22.2 4.5 51 200-253 8-69 (88)
460 1ldd_A APC2WHB, anaphase promo 29.0 62 0.0021 22.2 3.7 42 220-261 21-73 (74)
461 2fq3_A Transcription regulator 29.0 89 0.003 22.9 4.8 51 201-255 51-102 (104)
462 3m6z_A Topoisomerase V; helix- 28.9 47 0.0016 27.8 3.7 35 199-239 181-215 (380)
463 3c1d_A Protein ORAA, regulator 28.7 49 0.0017 25.7 3.7 49 201-259 6-67 (159)
464 1lva_A Selenocysteine-specific 28.4 70 0.0024 26.9 4.9 55 199-253 64-121 (258)
465 3l9f_A Putative uncharacterize 28.0 40 0.0014 27.6 3.2 57 201-264 36-108 (204)
466 3iwf_A Transcription regulator 27.6 31 0.0011 25.2 2.1 47 198-246 14-60 (107)
467 2w7n_A TRFB transcriptional re 27.6 57 0.002 23.7 3.6 26 220-245 33-58 (101)
468 1bwv_S Rubisco, protein (ribul 27.6 55 0.0019 25.3 3.6 30 232-261 13-45 (138)
469 2jrt_A Uncharacterized protein 27.6 1E+02 0.0035 22.0 4.9 31 220-250 48-78 (95)
470 2k9i_A Plasmid PRN1, complete 27.3 51 0.0018 20.2 3.0 17 230-246 30-47 (55)
471 1l9z_H Sigma factor SIGA; heli 27.0 77 0.0026 29.2 5.2 44 197-243 374-417 (438)
472 2hye_C Cullin-4A, CUL-4A; beta 26.8 72 0.0025 31.4 5.3 43 199-247 591-633 (759)
473 4f0h_B Ribulose bisphosphate c 26.7 58 0.002 25.2 3.6 30 232-261 13-45 (138)
474 2qen_A Walker-type ATPase; unk 26.7 1.2E+02 0.0042 25.4 6.3 53 201-261 282-339 (350)
475 1xrx_A SEQA protein; protein f 26.3 48 0.0016 20.8 2.5 34 201-237 5-39 (50)
476 2k27_A Paired box protein PAX- 26.0 28 0.00097 26.7 1.8 42 201-250 29-70 (159)
477 2o3f_A Putative HTH-type trans 25.5 25 0.00084 25.8 1.3 46 198-245 18-63 (111)
478 3u58_A Tetrahymena TEB1 AB; te 25.4 2.4E+02 0.008 21.8 10.4 67 68-136 131-200 (213)
479 3t5x_A PCI domain-containing p 25.2 24 0.00084 28.8 1.3 39 220-258 140-185 (203)
480 1b4a_A Arginine repressor; hel 25.1 74 0.0025 24.7 4.1 40 201-246 5-49 (149)
481 3l09_A Putative transcriptiona 25.0 52 0.0018 28.3 3.4 57 202-263 24-90 (266)
482 2xub_A DNA-directed RNA polyme 25.0 57 0.0019 30.7 4.0 46 202-253 361-406 (534)
483 1hqc_A RUVB; extended AAA-ATPa 24.5 1.1E+02 0.0037 25.7 5.5 51 199-253 245-297 (324)
484 3vlf_B 26S protease regulatory 24.2 1.4E+02 0.0047 20.5 5.0 41 202-244 5-46 (88)
485 1uhw_A Pleckstrin; three-helix 24.1 67 0.0023 23.7 3.4 32 224-255 44-77 (109)
486 1wh7_A ZF-HD homeobox family p 24.1 66 0.0023 22.1 3.2 40 198-240 23-67 (80)
487 1iuy_A Cullin-3 homologue; win 23.8 1.4E+02 0.0048 21.2 5.0 52 200-253 25-80 (92)
488 1zug_A Phage 434 CRO protein; 23.5 1E+02 0.0034 19.3 4.0 22 220-241 15-36 (71)
489 2ve8_A FTSK, DNA translocase F 23.3 1.3E+02 0.0044 20.6 4.5 48 200-253 9-56 (73)
490 1l0o_C Sigma factor; bergerat 22.8 18 0.00061 29.2 0.0 41 197-244 197-237 (243)
491 3r0j_A Possible two component 22.6 1E+02 0.0036 24.8 4.8 44 198-245 176-224 (250)
492 1uxc_A FRUR (1-57), fructose r 22.4 75 0.0026 20.8 3.1 18 224-241 3-20 (65)
493 3eqx_A FIC domain containing t 22.3 61 0.0021 29.1 3.5 33 221-253 311-343 (373)
494 1kgs_A DRRD, DNA binding respo 22.0 79 0.0027 24.8 3.8 44 198-245 151-199 (225)
495 2krk_A 26S protease regulatory 21.9 1.1E+02 0.0038 21.0 4.1 42 201-244 14-56 (86)
496 1neq_A DNA-binding protein NER 21.7 82 0.0028 21.1 3.3 32 203-241 11-42 (74)
497 2xub_A DNA-directed RNA polyme 21.7 1.2E+02 0.004 28.5 5.5 51 200-256 18-69 (534)
498 2kif_A O6-methylguanine-DNA me 21.5 1.8E+02 0.0061 21.3 5.3 42 200-244 2-45 (108)
499 4b4t_O 26S proteasome regulato 21.4 40 0.0014 30.4 2.0 38 219-256 305-343 (393)
500 3egq_A TETR family transcripti 21.3 53 0.0018 24.4 2.5 35 200-238 3-41 (170)
No 1
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=100.00 E-value=3.2e-60 Score=423.09 Aligned_cols=256 Identities=22% Similarity=0.396 Sum_probs=119.7
Q ss_pred CCCCCCccCCcccCCCCCCC-CCCCCCC-cCcCCcccceeeeeHHHHhcCCCCCCCCeEECCeEEeEEEEEEEEEEeeeC
Q 024592 5 EFDGAAAFAGGGFMPSQATT-VPDPSSS-FSKNRNVRTLLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDK 82 (265)
Q Consensus 5 ~~~~~~~~~gGGf~~~~~~~-~~~~~~~-~~k~~~~~~~~PvtIkqi~~a~~~~~~~f~i~g~~v~~V~iVG~V~~v~~~ 82 (265)
.|.+.+.++|||||+|+++. +++.+++ +++.++.++|+|||||||++++.. ++.|+|+|++|++|+|||+|++++..
T Consensus 8 ~~~~~~~~~~ggf~~~~~~~~~~~~~~~~~~~~~~~~~l~PvtIkqil~a~~~-d~~f~i~g~~i~~V~ivG~V~~i~~~ 86 (270)
T 2pi2_A 8 SYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLV-DEVFRIGNVEISQVTIVGIIRHAEKA 86 (270)
T ss_dssp ---------------------------------CCCCCCEECCHHHHHHCEEE-TTEEEETTEEESEEEEEEEEEEEEEC
T ss_pred CcCCcCCCCCCCcccCCCCCCCCCCCCCccccCCCCCceEEEEHHHHhcCccC-CCcEEECCEEEEEEEEEEEEEEEEec
Confidence 46666777889999876532 1222222 333568899999999999999432 56899999999999999999999999
Q ss_pred CCeEEEEEEcCCC-eEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEeeeCCChhHHHHHHHHHHHHH
Q 024592 83 EPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQ 161 (265)
Q Consensus 83 ~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d~Nei~~H~Levi~~~ 161 (265)
.+++.|+|+|+|| +|+|++|.+.+.+......+++|+||||+|+|+.|+++++|.++.||||+|+||+++|+|||+++|
T Consensus 87 ~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d~nEi~~H~Le~i~~h 166 (270)
T 2pi2_A 87 PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAH 166 (270)
T ss_dssp SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSCTHHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCCHhHHHHHHHHHHHHH
Confidence 9999999999999 899999987543223457899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCCCCCCcccccc--ccCCCCCCCCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHH
Q 024592 162 LYNTRLRGGSSNQPQMTNSNHLKEYNA--ISSNHYSFDEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKL 238 (265)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~n~~~~~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v 238 (265)
|+++++.+...+. .......++.... .+.+.++.+++++++++||++||++. +++|+|+++|+++| ++++++|
T Consensus 167 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vl~~i~~~~---~~~Gi~~~~I~~~l~~~~~~~v 242 (270)
T 2pi2_A 167 MVLSKANSQPSAG-RAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACP---RPEGLNFQDLKNQLKHMSVSSI 242 (270)
T ss_dssp HHHHHHTCCC----------------------------------------------------------------------
T ss_pred HHHccCCcccccc-CCCcCCCCcccccccCcccccCCCCCCHHHHHHHHHHHhCC---CccCCCHHHHHHHhcCCCHHHH
Confidence 9999886532110 0000000000000 01122222467889999999999863 47899999999999 6999999
Q ss_pred HHHHHHHhhCCeEEe-ecCCceeeccCC
Q 024592 239 MEALESLNENSLVYS-IDEFHYKSAVNA 265 (265)
Q Consensus 239 ~~al~~L~~eG~IYs-iDd~hyk~t~~~ 265 (265)
+++|++|++|||||+ +||+|||+|+++
T Consensus 243 ~~al~~L~~eG~IYsTiDd~h~k~t~~~ 270 (270)
T 2pi2_A 243 KQAVDFLSNEGHIYSTVDDDHFKSTDAE 270 (270)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHhCCEEeccccccceeeccCC
Confidence 999999999999999 999999999763
No 2
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=100.00 E-value=4.3e-40 Score=263.69 Aligned_cols=129 Identities=27% Similarity=0.531 Sum_probs=112.5
Q ss_pred cccceeeeeHHHHhcCCCCCCCCeEECCeEEeEEEEEEEEEEeeeCCCeEEEEEEcCCC-eEEEEEeccccccccccccc
Q 024592 37 NVRTLLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQI 115 (265)
Q Consensus 37 ~~~~~~PvtIkqi~~a~~~~~~~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~ 115 (265)
+.++++|||||||++|... ++.|.++|+++++|+|||+|+++++.++++.|+|+|+|| .|+|++|.+++.+......+
T Consensus 2 r~~~l~PvtIkqil~a~~~-~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~ 80 (132)
T 3kdf_D 2 RAQHIVPCTISQLLSATLV-DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVV 80 (132)
T ss_dssp ---CCEECCHHHHHTCEES-SSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCC
T ss_pred CCCceeeEEHHHHhhCccC-CCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccc
Confidence 5789999999999999432 568999999999999999999999999999999999999 99999998765443446789
Q ss_pred CCCCEEEEEEEeeeeCCccEEEEEEeeeCCChhHHHHHHHHHHHHHHHhcc
Q 024592 116 SKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTR 166 (265)
Q Consensus 116 ~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d~Nei~~H~Levi~~~l~~~~ 166 (265)
++|+||||+|+++.|+++++|.++.|||++|+||+++|+|||+++||+++|
T Consensus 81 ~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d~Nei~~H~Le~i~~hl~~~k 131 (132)
T 3kdf_D 81 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSK 131 (132)
T ss_dssp CTTCEEEEEEEEEEETTEEEEEEEEEEECSSTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEEeECCEEEEEEEEEEEcCCccHHHHHHHHHHHHHHeecC
Confidence 999999999999999999999999999999999999999999999999987
No 3
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=8.4e-40 Score=263.30 Aligned_cols=132 Identities=31% Similarity=0.611 Sum_probs=115.9
Q ss_pred CCcccceeeeeHHHHhcC-CCCCCCCeEECCeEEeEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEeccccc-ccccc
Q 024592 35 NRNVRTLLPMTVKQLSEL-SSNDESSASIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQM-EFNEV 112 (265)
Q Consensus 35 ~~~~~~~~PvtIkqi~~a-~~~~~~~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~-~~~~~ 112 (265)
.+..++|+|||||||++| +..+++.|+++|+++++|+|||+|+++++.++++.|+|+|+||.|+|++|.+.+. +....
T Consensus 3 ~~~~~~l~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~ 82 (136)
T 4gop_B 3 KAGNNTLRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKA 82 (136)
T ss_dssp ----CCEEECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------C
T ss_pred CCCCCcEEeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccc
Confidence 457899999999999999 4545679999999999999999999999999999999999999999999986543 22346
Q ss_pred cccCCCCEEEEEEEeeeeCCccEEEEEEeeeCCChhHHHHHHHHHHHHHHHhcc
Q 024592 113 NQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYNTR 166 (265)
Q Consensus 113 ~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d~Nei~~H~Levi~~~l~~~~ 166 (265)
+.+++|+||+|+|+++.|+++++|+++.|||++|+||+++|+|||+++||+++|
T Consensus 83 ~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d~Nei~~H~Le~i~~hl~~t~ 136 (136)
T 4gop_B 83 SEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFHRLEAVHAHLQVTR 136 (136)
T ss_dssp CSCCTTCEEEEEEEEEEETTEEEEEESEEEECSSHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCCccHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999999999999999999999986
No 4
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.3e-22 Score=166.42 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=108.1
Q ss_pred cccceeeeeHHHHhcCCCC---CCCCeEECCeEEeEEEEEEEEEEeeeCCCeEEEEEEcCCC-eEEEEEeccccccc-cc
Q 024592 37 NVRTLLPMTVKQLSELSSN---DESSASIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTG-RIECSRWAHEQMEF-NE 111 (265)
Q Consensus 37 ~~~~~~PvtIkqi~~a~~~---~~~~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~LdDgTG-~I~~~~w~~~~~~~-~~ 111 (265)
.....+|+.|++|++.... ++..+.+.|+||++|+|||.|+++++.++++.|+|||+|| .|+|++|.+...+. ..
T Consensus 14 t~~~~v~L~i~DI~~l~~~~~~~~~~~f~~n~PI~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~ 93 (159)
T 3kf6_A 14 TLSRWNPMFISDVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKR 93 (159)
T ss_dssp --CCCCBCCHHHHTTCBCCCC---CCEEETTEEECEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHH
T ss_pred chhheecchHHHHHhchhcCCCCCcceeECCeEEEEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccc
Confidence 3567899999999998321 2334468999999999999999999999999999999999 59999998863221 12
Q ss_pred ccccCCCCEEEEEEEeeeeCCccEEEEEEeeeCCChhHHHHHHHHHHHHHHHh
Q 024592 112 VNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIIDFNEITSHFVECIYVQLYN 164 (265)
Q Consensus 112 ~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d~Nei~~H~Levi~~~l~~ 164 (265)
...+.+|+||||.|+|+.|+++++|.++.++++.|+|+...||.+++.....+
T Consensus 94 ~~~l~~G~~VrV~G~v~~fr~~rqI~~~~i~~v~d~n~Ev~~W~~~~r~~~~l 146 (159)
T 3kf6_A 94 AISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKNL 146 (159)
T ss_dssp HTTCCTTCEEEEEEEEECSSSSCEEEEEEEEEECSTHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEEEEEeeCCEEEEEEEEEEECCCcHHHHHHHHHHHHHHHhC
Confidence 34589999999999999999999999999999999999999999999887654
No 5
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=99.24 E-value=3.4e-10 Score=96.38 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=94.5
Q ss_pred cceeeeeHHHHhcCCC----------CCCCCeEECCeEEeEEEEEEEEEEeeeCC--------CeEEEEEEcCCCe---E
Q 024592 39 RTLLPMTVKQLSELSS----------NDESSASIDGADVNTITVVGIVCDMQDKE--------PQFIFLIDDGTGR---I 97 (265)
Q Consensus 39 ~~~~PvtIkqi~~a~~----------~~~~~f~i~g~~v~~V~iVG~V~~v~~~~--------t~~~y~LdDgTG~---I 97 (265)
...+|+.|++|+.... ...+.|.+.++||..|+|+|+|+.++... .++.|+|||+||. |
T Consensus 47 ~~~vpL~I~DI~~l~~~~~~yg~~~~~~~~i~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i 126 (220)
T 3kf8_A 47 DKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKI 126 (220)
T ss_dssp TSEEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEE
T ss_pred CcccceEhHHhhhchhhhcccccccccCccEEEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceE
Confidence 4699999999998731 11246889999999999999999997655 4699999999996 7
Q ss_pred EEEEecccccccc-cccccCCCCEEEEEEEeeeeCC--------ccEEEEEEeeeC----CChhHHHHHHHHHHHHHH
Q 024592 98 ECSRWAHEQMEFN-EVNQISKGMYVRVYGHLKAFQD--------KRSLNAYSLRPI----IDFNEITSHFVECIYVQL 162 (265)
Q Consensus 98 ~~~~w~~~~~~~~-~~~~~~~g~yVrV~G~i~~f~~--------~~~i~~~~i~~v----~d~Nei~~H~Levi~~~l 162 (265)
.|+.-........ .......|..|+|.|.++.|++ .++|.+.++..+ .|+....-||-+++.-+-
T Consensus 127 ~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~~~~~~~rei~ve~i~vl~~~~~dl~~Ei~~W~~~~~fR~ 204 (220)
T 3kf8_A 127 RVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRMEFRK 204 (220)
T ss_dssp EEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccccccccceEEEEEEEEEeccCCCcHHHHHHHHHHHHHHHH
Confidence 7765432111100 1122457999999999999998 899999999999 566777788888777654
No 6
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.62 E-value=3.8e-08 Score=75.76 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=63.5
Q ss_pred eEEEEEEEEEEe-ee------C---CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEe--eeeCCccE
Q 024592 68 NTITVVGIVCDM-QD------K---EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHL--KAFQDKRS 135 (265)
Q Consensus 68 ~~V~iVG~V~~v-~~------~---~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i--~~f~~~~~ 135 (265)
..|.++|+|.++ .. . ..+..++|.|.||.|++++|.+... ....+++|++|.|.|.+ ..|+++.+
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~---~~~~l~~G~vv~i~g~~v~~~f~g~~q 93 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK---LLKKFREGDVIRIKDVNIRGGFGGRKE 93 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG---GGGTCCTTSEEEEEEEEECCCSSSSCE
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhh---hhhcCCCCCEEEEEeeEEccccCCeEE
Confidence 457888999887 21 1 3578899999999999999976532 23578999999999998 56999999
Q ss_pred EEEEEeeeCCChhHHHHH
Q 024592 136 LNAYSLRPIIDFNEITSH 153 (265)
Q Consensus 136 i~~~~i~~v~d~Nei~~H 153 (265)
|.+...+.|.-..++.+|
T Consensus 94 L~~~~~~~i~~~~~~~~~ 111 (115)
T 2k50_A 94 AHLMPRSTVEVLDPLEHH 111 (115)
T ss_dssp EEECTTCCEEEESSCCC-
T ss_pred EEECCCceEEECCccccc
Confidence 999877766544444433
No 7
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=98.58 E-value=1.9e-06 Score=68.19 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=89.6
Q ss_pred ccceeeeeHHHHhcCCCCCCCCeEEC-------CeEEeEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccc
Q 024592 38 VRTLLPMTVKQLSELSSNDESSASID-------GADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFN 110 (265)
Q Consensus 38 ~~~~~PvtIkqi~~a~~~~~~~f~i~-------g~~v~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~ 110 (265)
....+-|-.+||.++.......+++. ..+++.|.+=|.|+.. +. -.+.|+|+||.+.+.--.+-. .
T Consensus 22 ~~PpvK~l~~QLr~~~~~~~~~w~l~r~~~g~~~l~~s~VWmQG~VV~~-~~---g~~~LdDgTG~~~v~g~~~vp---~ 94 (150)
T 3mxn_B 22 RSPPLKVLAEQLRRDAEGGPGAWRLSRAAAGRGPLDLAAVWMQGRVVMA-DR---GEARLRDPSGDFSVRGLERVP---R 94 (150)
T ss_dssp SSCCEECCHHHHHHHEESCTTCCEECCTTTTCCCEECSEEEEEEEEEEE-ET---TEEEEEETTEEEEEECGGGSC---C
T ss_pred CCCcHHHHHHHHHHHhhCCCceEEEEecccCCccceeEEEEEEeEEEEe-CC---CeEEEECCCceEEEeeccccC---C
Confidence 34456788999998843334456554 2589999999999996 22 238999999999876543321 1
Q ss_pred cccccCCCCEEEEEEEeeeeCCccEEEEEEeeeCCC-hhHHHHHHHHHHHHH
Q 024592 111 EVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIID-FNEITSHFVECIYVQ 161 (265)
Q Consensus 111 ~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d-~Nei~~H~Levi~~~ 161 (265)
-...++.|+||-|+|.+..-.....|.+.+|.-+++ ++-...+.|||+.+|
T Consensus 95 g~p~l~~G~YVMV~G~v~~~s~eP~i~AvKm~DLS~~p~~E~mW~lEV~el~ 146 (150)
T 3mxn_B 95 GRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDNPIHESMWELEVEDLH 146 (150)
T ss_dssp CSCCCSTTCEEEEEEEEEECSSSCEEEEEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCEEEEEEEEEecCCCceEEEEEeeeCCCCcchHHHHHHHHHHHH
Confidence 134589999999999999988889999999988886 567789999999987
No 8
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.57 E-value=4.3e-07 Score=69.46 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=60.4
Q ss_pred eEEEEEEEEEEeeeC---CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEE-EEeeeeCCccEEEEEEeee
Q 024592 68 NTITVVGIVCDMQDK---EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVY-GHLKAFQDKRSLNAYSLRP 143 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~---~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~-G~i~~f~~~~~i~~~~i~~ 143 (265)
..|.++|+|.++... ..+....|.|.||+|.++.|.++. .+.+++|+.|+|. |.++.|+|+.+|++.....
T Consensus 16 ~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~-----~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~ 90 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE-----LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSS 90 (109)
T ss_dssp CEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC-----CCCCCTTCEEEEEEEEEEEETTEEEEEECSSSE
T ss_pred CcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc-----ccccCCCCEEEEEEEEEEEECCEEEEEECCceE
Confidence 568999999988653 346678999999999999998542 4689999999999 8999999999999976554
Q ss_pred CC
Q 024592 144 II 145 (265)
Q Consensus 144 v~ 145 (265)
|+
T Consensus 91 I~ 92 (109)
T 2kbn_A 91 IE 92 (109)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 9
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.53 E-value=2.3e-07 Score=70.68 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=61.2
Q ss_pred EEEEEEEEEEeee-----CC---CeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEE-EEeeeeCCccEEEEE
Q 024592 69 TITVVGIVCDMQD-----KE---PQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVY-GHLKAFQDKRSLNAY 139 (265)
Q Consensus 69 ~V~iVG~V~~v~~-----~~---t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~-G~i~~f~~~~~i~~~ 139 (265)
.|.++++|.++.+ .. ......|.|.||+|.++.|.+. +++|+.|+|. |.++.|+++.+|.+.
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~---------l~~Gdvv~i~ng~v~~~~g~~~L~v~ 85 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ---------LQDSDVVRIDNARVAQFNGYLSLSVG 85 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC---------CCTTEEEEEEEEEEEEETTEEEEEEC
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc---------cCCCCEEEEEeeEEeEECCEEEEEEC
Confidence 4667777766532 22 2778999999999999999762 8999999999 999999999999984
Q ss_pred ---EeeeCCChhHHHHH
Q 024592 140 ---SLRPIIDFNEITSH 153 (265)
Q Consensus 140 ---~i~~v~d~Nei~~H 153 (265)
.|.++.++.++.+|
T Consensus 86 ~~~~I~~~~~~~~~~~~ 102 (106)
T 2k75_A 86 DSSRIESVNVNIPLEHH 102 (106)
T ss_dssp TTSEEEECCSCCCCSCC
T ss_pred CcEEEEECCCCCccccc
Confidence 57788888777554
No 10
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.50 E-value=5.7e-07 Score=69.72 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=59.5
Q ss_pred EEEEEEEEEEeee--------C-CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEE-EEeeeeCCccEEEE
Q 024592 69 TITVVGIVCDMQD--------K-EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVY-GHLKAFQDKRSLNA 138 (265)
Q Consensus 69 ~V~iVG~V~~v~~--------~-~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~-G~i~~f~~~~~i~~ 138 (265)
.|.++++|.++.. . ..+..+.|.|.||+|.++.|.+.+ +.+++|++|+|. |+++.|+|+.+|.+
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~------~~~~~G~vv~i~~g~v~~~~g~~qL~i 87 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA------GSIKEGQVVKIENAWTTAFKGQVQLNA 87 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT------TCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh------hcCCCCCEEEEEeEEEEEeCCEEEEEE
Confidence 4777788877631 1 258899999999999999997653 358999999999 99999999999999
Q ss_pred EE---eeeCCChh
Q 024592 139 YS---LRPIIDFN 148 (265)
Q Consensus 139 ~~---i~~v~d~N 148 (265)
.. |.++.+++
T Consensus 88 ~~~~~i~~~~~~~ 100 (119)
T 1o7i_A 88 GSKTKIAEASEDG 100 (119)
T ss_dssp CTTCEEEECCCTT
T ss_pred CCCEEEEEcCCcC
Confidence 76 66666533
No 11
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=98.25 E-value=5.8e-06 Score=61.75 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=55.8
Q ss_pred eEEEEEEEEEEeee-----C-----CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEE
Q 024592 68 NTITVVGIVCDMQD-----K-----EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLN 137 (265)
Q Consensus 68 ~~V~iVG~V~~v~~-----~-----~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~ 137 (265)
..|.++|+|.++.. . .....+.|.|.||+|.+..|.+... . .+++|++|+|.|.++.+.+..+|+
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~----~-~i~~Gdvv~i~g~v~~~~~~~el~ 86 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD----F-EVKKGDIAEVSGYVKQGYSGLEIS 86 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG----C-CCCTTCEEEEEEEEEEC--CEEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc----c-ccCCCCEEEEEEEEEEcCCeEEEE
Confidence 57889999988741 1 1367799999999999999987542 1 799999999999999999988888
Q ss_pred EEEeeeC
Q 024592 138 AYSLRPI 144 (265)
Q Consensus 138 ~~~i~~v 144 (265)
+-.--.|
T Consensus 87 ~g~~~~i 93 (97)
T 3e0e_A 87 VDNIGII 93 (97)
T ss_dssp EEEEEEE
T ss_pred ECCCcEE
Confidence 7655443
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.92 E-value=7.1e-05 Score=56.63 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=57.1
Q ss_pred eEEEEEEEEEEeee-----C-----CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeee-CCccEE
Q 024592 68 NTITVVGIVCDMQD-----K-----EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAF-QDKRSL 136 (265)
Q Consensus 68 ~~V~iVG~V~~v~~-----~-----~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f-~~~~~i 136 (265)
..|.|+|+|.++.+ . .....++|.|.||+|.+..|.+... . .+++|+.|++.|.++.+ ++...|
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~----~-~l~~Gdvv~i~g~vk~~~~g~~eL 89 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD----I-DVGRGDYVRVRGYIREGYYGGLEC 89 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG----S-CCCTTCEEEEEEEEEECTTSSEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc----c-ccCCCCEEEEEEEEEEccCCCEEE
Confidence 57888898888752 1 1256799999999999999987653 2 79999999999999998 458888
Q ss_pred EEEEeeeCC
Q 024592 137 NAYSLRPII 145 (265)
Q Consensus 137 ~~~~i~~v~ 145 (265)
.+-.--.|+
T Consensus 90 ~~g~~~~i~ 98 (105)
T 3dm3_A 90 TANYVEILK 98 (105)
T ss_dssp EEEEEEEEE
T ss_pred EeCCceEEE
Confidence 886554443
No 13
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=97.45 E-value=0.0025 Score=48.32 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=61.2
Q ss_pred eeeHHHHhcCCCCCCCCeEECCeEEeEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEE
Q 024592 43 PMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122 (265)
Q Consensus 43 PvtIkqi~~a~~~~~~~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVr 122 (265)
..|++|++++.. + ..|.|-|.|+..-... .|...|+||+|.+..=.+. -.-..+.+++.|+
T Consensus 25 ~~TV~~a~~~~D--d----------~~V~L~G~Iv~~~~~d---~Y~F~D~TG~I~VeId~~~----w~g~~v~p~~~Vr 85 (109)
T 1nnx_A 25 VTTVESAKSLRD--D----------TWVTLRGNIVERISDD---LYVFKDASGTINVDIDHKR----WNGVTVTPKDTVE 85 (109)
T ss_dssp CCCHHHHTTSCS--S----------EEEEEEEEEEEEEETT---EEEEEETTEEEEEECCGGG----STTCCCCTTSCEE
T ss_pred eEeHHHHhhCcC--C----------CeEEEEEEEEEEeCCC---eEEEECCCccEEEEEChhh----cCCcccCCCCEEE
Confidence 478999987632 3 7899999998876443 4799999999998752111 0123578899999
Q ss_pred EEEEeeeeCCccEEEEEEeeeC
Q 024592 123 VYGHLKAFQDKRSLNAYSLRPI 144 (265)
Q Consensus 123 V~G~i~~f~~~~~i~~~~i~~v 144 (265)
|+|.+..--....|-+.+|+.+
T Consensus 86 i~GevDkd~~~~eIdV~~i~~~ 107 (109)
T 1nnx_A 86 IQGEVDKDWNSVEIDVKQIRKV 107 (109)
T ss_dssp EEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEECCCCCceEEEEEEEEEc
Confidence 9999997545678888888765
No 14
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.27 E-value=0.0021 Score=51.31 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=53.7
Q ss_pred eEEEEEEEEEEeee-------------------CCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEE-Ee
Q 024592 68 NTITVVGIVCDMQD-------------------KEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYG-HL 127 (265)
Q Consensus 68 ~~V~iVG~V~~v~~-------------------~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G-~i 127 (265)
..|.|+++|.++.. ...-....|-|.||+|....|.+. .+.+++|+.|++.+ .+
T Consensus 27 ~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~------~~~l~~Gd~v~i~na~v 100 (145)
T 1wjj_A 27 TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQ------VDLMKPGATVILRNSRI 100 (145)
T ss_dssp CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTH------HHHTCTTCEEEEEEEEE
T ss_pred CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCC------cCcCCCCCEEEEeccEE
Confidence 34777777777542 123567899999999999999763 34588999999987 59
Q ss_pred eeeCCccEEEEEEeeeC
Q 024592 128 KAFQDKRSLNAYSLRPI 144 (265)
Q Consensus 128 ~~f~~~~~i~~~~i~~v 144 (265)
+.|++...|.+-.--.|
T Consensus 101 ~~~~G~~~L~vgk~g~I 117 (145)
T 1wjj_A 101 DMFKGTMRLGVDKWGRI 117 (145)
T ss_dssp EEETTEEEEEECTTCCB
T ss_pred EeECCEEEEEECCCEEE
Confidence 99999999888643333
No 15
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=97.27 E-value=0.00097 Score=61.62 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=63.0
Q ss_pred eEEeEEEEEEEEEEe-e-eCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEee
Q 024592 65 ADVNTITVVGIVCDM-Q-DKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLR 142 (265)
Q Consensus 65 ~~v~~V~iVG~V~~v-~-~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~ 142 (265)
.+.+.+.+.|.|.+. . .....+.|+|+|+++.|+|..|.....-......+..||.|.|.|.++. + +|++.+++
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~--g--tLnvEk~~ 357 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK--D--TINLEKIQ 357 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET--T--EEEEEEEE
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC--C--EEEEEEEE
Confidence 356789999999988 4 4557899999999999999999864321233567899999999999887 3 99999988
Q ss_pred eCCC
Q 024592 143 PIID 146 (265)
Q Consensus 143 ~v~d 146 (265)
++.-
T Consensus 358 v~~l 361 (402)
T 3au7_A 358 IVEL 361 (402)
T ss_dssp EEEC
T ss_pred Eccc
Confidence 8754
No 16
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.13 E-value=0.0009 Score=46.14 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=47.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceee
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKS 261 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~ 261 (265)
.+++.+.+||++|++. ...++..+|+++|+++.+.|.+.|..|.++|.|-+-..-+|..
T Consensus 7 ~m~~~~~~IL~~L~~~-----~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 7 TGDNLEQKILQVLSDD-----GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp --CHHHHHHHHHHHHH-----CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred cccHHHHHHHHHHHHc-----CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEee
Confidence 3556788999999753 2469999999999999999999999999999997733346654
No 17
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.03 E-value=0.0011 Score=47.75 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=45.8
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
..++++||++|++.+ ....++..+|+++|+++...|+..|..|.++|.|..++
T Consensus 9 ~~~~~~IL~~L~~~~---pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 9 QDQEQRILKFLEELG---EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHHHC---TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHHHHHHcC---CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 357888999999752 24579999999999999999999999999999998743
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.95 E-value=0.00074 Score=48.01 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
+.+.+||++|++.+ .+.+++..+|+++|+++...|+..|..|.++|.|+.+.
T Consensus 14 ~~~~~IL~~L~~~~---~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 14 DQEQRILKFLEELG---EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHHHC---SSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHcC---CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 46788999999863 24589999999999999999999999999999998843
No 19
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.78 E-value=0.0015 Score=46.19 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=49.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
.+.++.++||++|++. ..-+.-.+|++.++++..+|.++|..|-.||.|+|----.|..+
T Consensus 16 ~~~d~eekVLe~Lkea-----G~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 16 REGHLEQRILQVLTEA-----GSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHHHHH-----TSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred ccchHHHHHHHHHHHc-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 3567899999999985 34688899999999999999999999999999998323355443
No 20
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.77 E-value=0.0015 Score=47.05 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=44.7
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecC
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDE 256 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd 256 (265)
..+...+||++|++. |++..+|+++|+++...|+..|..|..+|.|...+.
T Consensus 15 ~~~~~~~IL~lL~~~-------g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIE-------GATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp SHHHHHHHHHHHSSS-------TEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred hHHHHHHHHHHHHHc-------CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 347889999999852 499999999999999999999999999999987433
No 21
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.70 E-value=0.00078 Score=48.23 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=44.1
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHH-HHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMD-KLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~-~v~~al~~L~~eG~IYs 253 (265)
+.+.+++||.+|+.. .+.+..+|++.|+++.. .||..|..|..+|.|..
T Consensus 9 ~~~~~~~IL~~Lk~~------g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 9 MAEIKEKICDYLFNV------SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHHHHHHHHT------CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred chhHHHHHHHHHHHc------CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 347899999999974 26899999999999999 99999999999999985
No 22
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=96.69 E-value=0.0059 Score=62.73 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=60.7
Q ss_pred EeEEEEEEEEEEeeeC-----CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeee--eCCccEEEEE
Q 024592 67 VNTITVVGIVCDMQDK-----EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA--FQDKRSLNAY 139 (265)
Q Consensus 67 v~~V~iVG~V~~v~~~-----~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~--f~~~~~i~~~ 139 (265)
...|.|-|.|-+++.. ..-++|.|.|.|++|.|+.|.+...+.+....+++|++|+|.|++.. |.....+.+.
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~~~~~~~~ 96 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVRDLVIIAN 96 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTTEEEEEEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCcceEEEee
Confidence 4689999999877542 24679999999999999999775543334567999999999999874 5566677777
Q ss_pred EeeeCC
Q 024592 140 SLRPII 145 (265)
Q Consensus 140 ~i~~v~ 145 (265)
.|.+++
T Consensus 97 ~~~~~~ 102 (1041)
T 3f2b_A 97 DLNEIA 102 (1041)
T ss_dssp EEEEEC
T ss_pred eeEEec
Confidence 776654
No 23
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.013 Score=54.65 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=56.5
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCC---ccEEEEEEee
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQD---KRSLNAYSLR 142 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~---~~~i~~~~i~ 142 (265)
..|+|.|||.+++....-+.+.|.|+||.|.|..-.+.+ ..+....+..|+.|.|.|.+..-.. ...|.+..+.
T Consensus 17 ~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~-~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~ 93 (429)
T 1wyd_A 17 KEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNSS-AFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEIT 93 (429)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTST-THHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChH-HHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeEEE
Confidence 369999999999988888888999999999998754321 1122357899999999999987643 4566665553
No 24
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.52 E-value=0.016 Score=54.50 Aligned_cols=77 Identities=17% Similarity=0.333 Sum_probs=55.8
Q ss_pred eEEEEEEEEEEeeeCC-CeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeC-----------CccE
Q 024592 68 NTITVVGIVCDMQDKE-PQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQ-----------DKRS 135 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~-t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~-----------~~~~ 135 (265)
..|+|.|||.+++..+ .-+.+.|.|+||.|.|..-.++..+......+..|+.|.|.|.|..-. +...
T Consensus 31 ~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~E 110 (456)
T 3m4p_A 31 KLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLE 110 (456)
T ss_dssp SEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSE
T ss_pred CEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEE
Confidence 4799999999998885 466679999999999876542211111234689999999999997422 4567
Q ss_pred EEEEEeeeC
Q 024592 136 LNAYSLRPI 144 (265)
Q Consensus 136 i~~~~i~~v 144 (265)
|.+..+..+
T Consensus 111 l~~~~i~vl 119 (456)
T 3m4p_A 111 MQVTEWKVI 119 (456)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEEE
Confidence 777776544
No 25
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=96.50 E-value=0.014 Score=56.60 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=57.3
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeee--------CCccEEEEE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAF--------QDKRSLNAY 139 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f--------~~~~~i~~~ 139 (265)
..|+|.|||.+++....-+.+.|.|+||.|.|..-.+.. .-+....+..|+.|.|.|.|+.- .+...|.+.
T Consensus 17 ~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~ 95 (580)
T 1l0w_A 17 EEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASP-AYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELS 95 (580)
T ss_dssp CEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTST-THHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChh-HHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEe
Confidence 369999999999988888888999999999998754321 11224568999999999999864 355677776
Q ss_pred Eeee
Q 024592 140 SLRP 143 (265)
Q Consensus 140 ~i~~ 143 (265)
.+..
T Consensus 96 ~i~v 99 (580)
T 1l0w_A 96 ALEV 99 (580)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 26
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=96.46 E-value=0.021 Score=53.38 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=55.7
Q ss_pred eEEEEEEEEEEeeeCC-CeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeC------CccEEEEEE
Q 024592 68 NTITVVGIVCDMQDKE-PQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQ------DKRSLNAYS 140 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~-t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~------~~~~i~~~~ 140 (265)
..|+|.|||.+++..+ .-+.+.|.|+||.|.|..-.+.. +......+..|+.|.|.|.|+.-. +...|.+..
T Consensus 12 ~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~-~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~ 90 (435)
T 2xgt_A 12 ERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLC-QTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADF 90 (435)
T ss_dssp SEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGG-SSHHHHHCCTTCEEEEEEEEEECC------TTEEEEEEE
T ss_pred CEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcch-hHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEE
Confidence 3699999999999885 56778999999999988742211 111112589999999999998632 446777766
Q ss_pred eeeCC
Q 024592 141 LRPII 145 (265)
Q Consensus 141 i~~v~ 145 (265)
+..+.
T Consensus 91 ~~vl~ 95 (435)
T 2xgt_A 91 WKIIG 95 (435)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66554
No 27
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=96.46 E-value=0.013 Score=56.96 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=58.2
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeee----------CCccEEE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAF----------QDKRSLN 137 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f----------~~~~~i~ 137 (265)
..|+|.|||.+++....-+.+.|.|+||.|.|..-.+....-+....+..|+.|.|.|.|+.- .+...|.
T Consensus 16 ~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~ 95 (585)
T 1c0a_A 16 QQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVL 95 (585)
T ss_dssp CEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEE
T ss_pred CEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEE
Confidence 369999999999988888889999999999988743221101223568999999999999864 3556777
Q ss_pred EEEeeeCC
Q 024592 138 AYSLRPII 145 (265)
Q Consensus 138 ~~~i~~v~ 145 (265)
+..+..+.
T Consensus 96 ~~~i~vl~ 103 (585)
T 1c0a_A 96 ASSLTIIN 103 (585)
T ss_dssp EEEEEEEE
T ss_pred EeEEEEEe
Confidence 76665443
No 28
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=96.40 E-value=0.016 Score=54.22 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=56.9
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccc--cccccccCCCCEEEEEEEeeeeC---CccEEEEEEee
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQME--FNEVNQISKGMYVRVYGHLKAFQ---DKRSLNAYSLR 142 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~--~~~~~~~~~g~yVrV~G~i~~f~---~~~~i~~~~i~ 142 (265)
..|+|.|||.+++....-+.+.|.|+||.|.|..-.+...+ -+....+..|+.|.|.|.++.-. +...|.+..+.
T Consensus 17 ~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~ 96 (438)
T 3nem_A 17 QKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIV 96 (438)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEE
Confidence 46999999999998887777799999999998875432110 12245689999999999998754 45667776655
Q ss_pred e
Q 024592 143 P 143 (265)
Q Consensus 143 ~ 143 (265)
.
T Consensus 97 v 97 (438)
T 3nem_A 97 V 97 (438)
T ss_dssp E
T ss_pred E
Confidence 4
No 29
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.40 E-value=0.0034 Score=44.73 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 204 QMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 204 ~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
.+|+++|++. .-+++++|+++|+.++..||.-|+.|.+.|.|.-++
T Consensus 5 ~~Il~~L~~~------g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 5 IQVRDLLALR------GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHS------CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4588999764 368999999999999999999999999999986653
No 30
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.36 E-value=0.0059 Score=44.73 Aligned_cols=53 Identities=17% Similarity=0.413 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+++.-|..||.+|.+. .+.|+...+|+++++++...|..+|+.|+..|+|..
T Consensus 16 ~~Lt~~q~~Vl~~I~~~----g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA----GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp CCSCSSHHHHHHHHHHH----CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHc----CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 57888999999999874 256999999999999999999999999999999995
No 31
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.36 E-value=0.015 Score=55.16 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=57.3
Q ss_pred eEEEEEEEEEEeeeCCCe-EEEEEEcCCCeEEEEEecccc---c-c-cccccccCCCCEEEEEEEeeeeC--------Cc
Q 024592 68 NTITVVGIVCDMQDKEPQ-FIFLIDDGTGRIECSRWAHEQ---M-E-FNEVNQISKGMYVRVYGHLKAFQ--------DK 133 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~-~~y~LdDgTG~I~~~~w~~~~---~-~-~~~~~~~~~g~yVrV~G~i~~f~--------~~ 133 (265)
..|+|.|||.+++..... +.+.|.|++|.|.|..-.+.+ . + .+....+..|+.|.|.|.+..-. +.
T Consensus 37 ~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~ 116 (487)
T 1eov_A 37 KEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQN 116 (487)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEE
T ss_pred CEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCc
Confidence 469999999999988877 788999999999998754311 1 1 11235689999999999998764 34
Q ss_pred cEEEEEEeeeC
Q 024592 134 RSLNAYSLRPI 144 (265)
Q Consensus 134 ~~i~~~~i~~v 144 (265)
..|.+..+..+
T Consensus 117 ~El~~~~i~vl 127 (487)
T 1eov_A 117 LEIHITKIYTI 127 (487)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEe
Confidence 66666665443
No 32
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.31 E-value=0.0043 Score=44.05 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..+++||++|++.-......-+++.||++.|++++..|+.-|..|.++|.|-.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 46788999998741000012478999999999999999999999999999954
No 33
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=96.27 E-value=0.031 Score=53.24 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=57.8
Q ss_pred EEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccc--cc-cccccCCCCEEEEEEEeeee-CCccEEEEEEeeeC
Q 024592 69 TITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQME--FN-EVNQISKGMYVRVYGHLKAF-QDKRSLNAYSLRPI 144 (265)
Q Consensus 69 ~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~--~~-~~~~~~~g~yVrV~G~i~~f-~~~~~i~~~~i~~v 144 (265)
.|+|.|||.+++.....+.+.|.|+||.|.|..-.+...+ -. ....+..|+.|.|.|.|..- .+...|.+..+..+
T Consensus 66 ~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl 145 (504)
T 1e1o_A 66 EVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLL 145 (504)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEe
Confidence 6999999999998888888899999999999875442111 11 34568999999999998763 45667777666443
No 34
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=96.15 E-value=0.041 Score=51.21 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=55.1
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccC-CCCEEEEEEEeeeeCC---ccEEEEEEeee
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQIS-KGMYVRVYGHLKAFQD---KRSLNAYSLRP 143 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~-~g~yVrV~G~i~~f~~---~~~i~~~~i~~ 143 (265)
..|+|.|+|.+++....-+.+.|.|++|.|.|..-. ..+. .|+.|.|.|.+..-.. ...|.+..+..
T Consensus 14 ~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~---------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~v 84 (422)
T 1n9w_A 14 QEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG---------LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEV 84 (422)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES---------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc---------cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEE
Confidence 369999999999988887888999999999988532 4578 8999999999987643 46677666654
Q ss_pred CC
Q 024592 144 II 145 (265)
Q Consensus 144 v~ 145 (265)
+.
T Consensus 85 l~ 86 (422)
T 1n9w_A 85 LS 86 (422)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 35
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=96.14 E-value=0.018 Score=55.17 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=57.2
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccc--cccccccCCCCEEEEEEEeeee-CCccEEEEEEeeeC
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQME--FNEVNQISKGMYVRVYGHLKAF-QDKRSLNAYSLRPI 144 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~--~~~~~~~~~g~yVrV~G~i~~f-~~~~~i~~~~i~~v 144 (265)
..|+|.|||.+++....-+.+.|.|+||.|.|..-.+...+ -+....+..|+.|.|.|.+..- .+...|.+..++.+
T Consensus 87 ~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vL 166 (529)
T 4ex5_A 87 LEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLL 166 (529)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred cEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 46999999999988887778899999999998765432110 1123468999999999998764 36677777666543
No 36
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.12 E-value=0.0053 Score=43.44 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=39.9
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+.+||++|.+. ..+++.+|++.++++...|+..|+.|.++|.|..
T Consensus 2 r~~Il~~L~~~------~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRH------NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHHS------CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 56799999753 2589999999999999999999999999999974
No 37
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.11 E-value=0.0048 Score=44.90 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=39.9
Q ss_pred HHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEee
Q 024592 204 QMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSI 254 (265)
Q Consensus 204 ~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsi 254 (265)
.+|+++|++. .-+++.+|++.|+.++..||.-|+.|.+.|.|.-+
T Consensus 5 ~~Il~~L~~~------g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQ------GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHS------CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4588999763 36899999999999999999999999999999873
No 38
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=96.10 E-value=0.019 Score=53.74 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=57.7
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEeccccc-c-cccccccCCCCEEEEEEEeeeeCC---ccEEEEEEee
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQM-E-FNEVNQISKGMYVRVYGHLKAFQD---KRSLNAYSLR 142 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~-~-~~~~~~~~~g~yVrV~G~i~~f~~---~~~i~~~~i~ 142 (265)
..|+|.|||.+++....-+.+.|.|+||.|.|..-.+... + -+....+..|+.|.|.|.+..-.. ...|.+..+.
T Consensus 17 ~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~ 96 (434)
T 1x54_A 17 KKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLE 96 (434)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEEEeEEE
Confidence 3699999999999888888889999999999987532210 0 122356899999999999987653 4667776665
Q ss_pred eC
Q 024592 143 PI 144 (265)
Q Consensus 143 ~v 144 (265)
.+
T Consensus 97 vl 98 (434)
T 1x54_A 97 VI 98 (434)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 39
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.0075 Score=44.56 Aligned_cols=58 Identities=16% Similarity=0.398 Sum_probs=51.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCc
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFH 258 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~h 258 (265)
.+|++.+..||.+|++. .+.||...+|..+++++...|..+|..|+..|+|.++-.-+
T Consensus 33 ~~Lt~~E~lVy~~I~~a----Gn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vksv~ 90 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDA----GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVS 90 (95)
T ss_dssp CSCSHHHHHHHHHHHHH----TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECCSC
T ss_pred cCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecCcc
Confidence 57889999999999985 36799999999999999999999999999999999943333
No 40
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.01 Score=39.31 Aligned_cols=44 Identities=18% Similarity=0.407 Sum_probs=39.3
Q ss_pred hHHHHHHHhcCcCCCCCCCC-cCHHHHHHhcCCCHHHHHHHHHHHhhCCeE
Q 024592 202 IDQMVLDFLRRPEFLANNNG-VHRNVISQQLNLPMDKLMEALESLNENSLV 251 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~G-v~~~~I~~~l~~~~~~v~~al~~L~~eG~I 251 (265)
...+||+.||+.+ | +.++.+++.++.+.++|.++|..|.+.|+|
T Consensus 11 ~e~~lL~yIr~sG------GildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 11 TERELLDYIVNNG------GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp CHHHHHHHHHHTT------SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHHHHcC------CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 4578999999742 5 499999999999999999999999999998
No 41
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=95.91 E-value=0.025 Score=39.80 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=46.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEF 257 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~ 257 (265)
++...|+++|...+ .++..+..+|+++|+++-.+|+.+|-.|...|.|+.++..
T Consensus 12 ~~~~~v~~~i~~L~---~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~ 65 (75)
T 1sfu_A 12 EIFSLVKKEVLSLN---TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75)
T ss_dssp HHHHHHHHHHHTSC---TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHHHhCC---CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCC
Confidence 68888999988753 3445999999999999999999999999999999985543
No 42
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=95.76 E-value=0.029 Score=53.26 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEeccccc-c-cccccccCCCCEEEEEEEeeee-CCccEEEEEEeeeC
Q 024592 69 TITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQM-E-FNEVNQISKGMYVRVYGHLKAF-QDKRSLNAYSLRPI 144 (265)
Q Consensus 69 ~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~-~-~~~~~~~~~g~yVrV~G~i~~f-~~~~~i~~~~i~~v 144 (265)
.|+|.|||.+++.....+.+.|.|+||.|.|..-.+... + .+....+..|+.|.|.|.+..- .+...|.+..+..+
T Consensus 58 ~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl 136 (493)
T 3a74_A 58 EVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFL 136 (493)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEc
Confidence 699999999999888888889999999999987543211 0 1123568999999999998764 45567777666443
No 43
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=95.69 E-value=0.061 Score=51.67 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=57.7
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccc---cccccccCCCCEEEEEEEeeeeC--------CccEE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQME---FNEVNQISKGMYVRVYGHLKAFQ--------DKRSL 136 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~---~~~~~~~~~g~yVrV~G~i~~f~--------~~~~i 136 (265)
..|+|.|||.+++....-+.+.|.|++|.|.|..-.++..+ .+....+..|+.|.|.|.|+.-. +...|
T Consensus 63 ~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El 142 (548)
T 3i7f_A 63 KTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEI 142 (548)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEE
Confidence 47999999999998887777789999999999886532111 11245689999999999998753 45667
Q ss_pred EEEEeeeC
Q 024592 137 NAYSLRPI 144 (265)
Q Consensus 137 ~~~~i~~v 144 (265)
.+..|..+
T Consensus 143 ~~~~i~vl 150 (548)
T 3i7f_A 143 HVTSIAVV 150 (548)
T ss_dssp EEEEEEEE
T ss_pred EEeEEEEE
Confidence 77666543
No 44
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=95.65 E-value=0.34 Score=39.99 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=61.6
Q ss_pred eeeeeHHHHhcCCCCCCCCeEECCeEEeEEEEEEEEEEee---e--CCC---eEEEEEEcCC----C-eEEEEEeccccc
Q 024592 41 LLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQ---D--KEP---QFIFLIDDGT----G-RIECSRWAHEQM 107 (265)
Q Consensus 41 ~~PvtIkqi~~a~~~~~~~f~i~g~~v~~V~iVG~V~~v~---~--~~t---~~~y~LdDgT----G-~I~~~~w~~~~~ 107 (265)
..=.+|+++++.... . ..|.++|+|++.. . +.+ .++|+|-|.+ + .|.|.+|.....
T Consensus 27 ~~~~~~r~~l~~~~~-g----------~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e 95 (187)
T 1qzg_A 27 LTFQSIRSSQELQKK-N----------TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGN 95 (187)
T ss_dssp EEEECHHHHTSCCSS-C----------EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSS
T ss_pred eeEEEHHHHHhhccC-C----------CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChh
Confidence 444567777643211 1 5789999998864 2 233 5899999977 3 499999976542
Q ss_pred cccccccc-CCCCEEEEEE-EeeeeCCccEEEEEE
Q 024592 108 EFNEVNQI-SKGMYVRVYG-HLKAFQDKRSLNAYS 140 (265)
Q Consensus 108 ~~~~~~~~-~~g~yVrV~G-~i~~f~~~~~i~~~~ 140 (265)
..+.+ .+||.|++.. +|+.|+++.++....
T Consensus 96 ---~LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~ 127 (187)
T 1qzg_A 96 ---DLPVIKQVGQPLLLHQITLRSYRDRTQGLSKD 127 (187)
T ss_dssp ---CSCCCCSTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ---hCCCCCCCCCEEEEEEEEEEEECCeEEEEEcC
Confidence 46776 8999999986 589999998876543
No 45
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.46 E-value=0.022 Score=45.65 Aligned_cols=48 Identities=10% Similarity=0.281 Sum_probs=42.6
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
+..+..+||+.|++. .-++..+|++++++++..|+..|+.|.++|.|-
T Consensus 1 lD~~d~~il~~L~~~------~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 1 MDRLDRKILRILQED------STLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp CCHHHHHHHHHHTTC------SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHC------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 356889999999874 357999999999999999999999999999984
No 46
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.42 E-value=0.021 Score=44.72 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=43.3
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
+++++.+||++|++. ..++..+|+++++++...|+..|..|.++|.|-
T Consensus 3 ld~~d~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 3 LDQIDLNIIEELKKD------SRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp CCHHHHHHHHHHHHC------SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 567889999999763 358999999999999999999999999999994
No 47
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=95.40 E-value=0.07 Score=50.98 Aligned_cols=100 Identities=11% Similarity=0.160 Sum_probs=66.1
Q ss_pred eeeeeHHHHhcC-CCCCCCCeEECCeEEeEEEEEEEEEEeeeCC-CeEEEEEEcCCCeEEEEEecccc-c-cc-cc-ccc
Q 024592 41 LLPMTVKQLSEL-SSNDESSASIDGADVNTITVVGIVCDMQDKE-PQFIFLIDDGTGRIECSRWAHEQ-M-EF-NE-VNQ 114 (265)
Q Consensus 41 ~~PvtIkqi~~a-~~~~~~~f~i~g~~v~~V~iVG~V~~v~~~~-t~~~y~LdDgTG~I~~~~w~~~~-~-~~-~~-~~~ 114 (265)
-+..+++++... .....+. ...| ..|+|.|||.+++... .-..+.|.|++|.|.|..-.+.. . +. .. ...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~---~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~ 107 (521)
T 3bju_A 32 HVDISLTDFIQKYSHLQPGD-HLTD---ITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNK 107 (521)
T ss_dssp CCCSCHHHHHHHHTTCCTTC-BCSS---CCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHH
T ss_pred cCccchHHHHHHhhhhcccc-ccCC---cEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhc
Confidence 344678888764 1100000 0112 4699999999999887 67778999999999998765432 1 10 11 235
Q ss_pred cCCCCEEEEEEEeeee-CCccEEEEEEeeeC
Q 024592 115 ISKGMYVRVYGHLKAF-QDKRSLNAYSLRPI 144 (265)
Q Consensus 115 ~~~g~yVrV~G~i~~f-~~~~~i~~~~i~~v 144 (265)
+..|+.|.|.|.+..- .+...|.+..+..+
T Consensus 108 l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l 138 (521)
T 3bju_A 108 LRRGDIIGVQGNPGKTKKGELSIIPYEITLL 138 (521)
T ss_dssp CCTTCEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecCCCCEEEEEeEEEEe
Confidence 8999999999998754 45567777665544
No 48
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.40 E-value=0.026 Score=39.74 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=44.2
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
++.-+..||++|.+. ....+++++|++.+ +++...|...|+.|.+.|.|-.
T Consensus 15 ~t~~r~~IL~~l~~~----~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 15 VTLPRLKILEVLQEP----DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp CCHHHHHHHHHHTSG----GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 567788899999763 11468999999999 8999999999999999999988
No 49
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.39 E-value=0.042 Score=39.84 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=46.7
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeeccCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAVNA 265 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~~~ 265 (265)
..+..||.+| . ..+++.+|++.++++...|...|..|.+.|.|.... .+|..+..|
T Consensus 31 ~~r~~Il~~L-~-------~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g 86 (96)
T 1y0u_A 31 PVRRKILRML-D-------KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVVTDAG 86 (96)
T ss_dssp HHHHHHHHHH-H-------TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEECTTT
T ss_pred HHHHHHHHHH-c-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEECCCc
Confidence 5677899988 3 148999999999999999999999999999998832 488777553
No 50
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.35 E-value=0.016 Score=43.93 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=50.0
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--CCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL--NLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
+...+++||++|++. .-+++.+|++.+ +++...|++.|..|.+.|.|-....-.|..|.
T Consensus 11 md~~d~~IL~~L~~~------g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~ 71 (111)
T 3b73_A 11 MTIWDDRILEIIHEE------GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITE 71 (111)
T ss_dssp CCHHHHHHHHHHHHH------SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECH
T ss_pred cCHHHHHHHHHHHHc------CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCceEEECc
Confidence 678899999999864 257999999999 99999999999999999999873333777764
No 51
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=95.12 E-value=0.033 Score=43.66 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=42.6
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
+++.+.+||.+|+.. ..++..+|++.++++...+...|+.|.+.|.|-
T Consensus 1 ld~~~~~il~~L~~~------~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 1 MDEIDLRILKILQYN------AKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp CCHHHHHHHHHHTTC------TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred CChHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 356788999999763 368999999999999999999999999999984
No 52
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=95.08 E-value=0.14 Score=37.97 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=40.1
Q ss_pred eEEEEEEEEEEeee----CCCeEEEEEE-cCCC-----eEEEEEecccccccccccccCCCCEEEEEEEeeeeC
Q 024592 68 NTITVVGIVCDMQD----KEPQFIFLID-DGTG-----RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQ 131 (265)
Q Consensus 68 ~~V~iVG~V~~v~~----~~t~~~y~Ld-DgTG-----~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~ 131 (265)
+++.+||.|.+|.+ ...-..|+|. |+.+ .+.++.+-+....+.-...+++|..|+|.|+||...
T Consensus 4 sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 4 SNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred cceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 57899999999987 3344555543 4443 366666655432122346799999999999999863
No 53
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=95.06 E-value=0.025 Score=44.54 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=43.6
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
++.++.+||++|++. ..++..+|++.+++++..|+..|..|.++|.|-
T Consensus 7 ld~~d~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSEN------SRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHC------TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 678899999999863 368999999999999999999999999999994
No 54
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.00 E-value=0.058 Score=38.73 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=46.2
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
+.+..||.+|.+ ..++++.+|++.++++...|...|..|.+.|.|.. -|.. .|..|
T Consensus 24 ~~~~~il~~l~~------~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~ 82 (99)
T 3cuo_A 24 PKRLLILCMLSG------SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIK 82 (99)
T ss_dssp HHHHHHHHHHTT------CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEEC
T ss_pred hHHHHHHHHHHh------CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEC
Confidence 577889999864 24789999999999999999999999999999987 5543 34444
No 55
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.94 E-value=0.031 Score=42.73 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCC-cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNG-VHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~G-v~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+++..+..||.+|.+. +.. +++.+|++.++++...|...|+.|.+.|.|..
T Consensus 23 gLt~~e~~il~~L~~~-----~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNE-----PDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp TCCHHHHHHHHHHHHS-----TTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHC-----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 5788999999999753 223 99999999999999999999999999999976
No 56
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.91 E-value=0.037 Score=44.90 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=44.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.+++++.+||++|+.. ..++..+|++++++++..|+..|+.|.++|.|-
T Consensus 14 ~ld~~d~~IL~~L~~~------~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 14 HLDDLDRNILRLLKKD------ARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4778999999999863 358999999999999999999999999999993
No 57
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.89 E-value=0.03 Score=44.17 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.++..+.+||++|++. ..++..+|++++++++..++..|..|.++|.|-
T Consensus 5 ~ld~~d~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 5 LIDNLDRGILEALMGN------ARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp CCCHHHHHHHHHHHHC------TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred ccCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcc
Confidence 3678899999999863 368999999999999999999999999999995
No 58
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.88 E-value=0.037 Score=43.48 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=43.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.++..+.+||.+|+.. ..++..+|++.++++...+...|+.|.+.|.|-
T Consensus 4 ~ld~~~~~iL~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 4 ALDDIDRILVRELAAD------GRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3678899999999753 368999999999999999999999999999994
No 59
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=94.83 E-value=0.014 Score=48.36 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.|+..|.+||++|++.-. ......++.||++.|+++...+...|..|.+.|.|..
T Consensus 2 ~lt~~q~~il~~I~~~~~-~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIE-KNGYPPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHHHHHHHH-HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CcCHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 477899999999876311 1123479999999999999999999999999999965
No 60
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=94.81 E-value=0.024 Score=43.87 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=42.4
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
+++.+..|+..|+.. ..++..+|++.++++...++..|+.|.++|.|-
T Consensus 2 ld~~~~~il~~L~~~------~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 2 IDERDKIILEILEKD------ARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp CCSHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 456888999999753 357999999999999999999999999999995
No 61
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.80 E-value=0.046 Score=43.56 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.++..+.+||++|+.. ..++..+|++.++++...++..|..|.++|.|-
T Consensus 7 ~ld~~~~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 7 TLDKTDIKILQVLQEN------GRLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 4678899999999863 258999999999999999999999999999994
No 62
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.68 E-value=0.053 Score=39.30 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+..||.+|... .+++..+|++.++++...|...|..|.+.|.|.. .+
T Consensus 17 ~l~~~~~~il~~l~~~------~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLER------GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCCHHHHHHHHHHHHH------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 4678888999999653 3689999999999999999999999999999988 55
No 63
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=94.57 E-value=0.042 Score=57.34 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=43.7
Q ss_pred eEEEEEEEEEEeeeC-----CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEee
Q 024592 68 NTITVVGIVCDMQDK-----EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLR 142 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~-----~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~ 142 (265)
..|++.|.|.+++.. .....++|+|.||.++|.+|.+.-. .....+.++..|.|.|++..-. ..+|.+..+.
T Consensus 1043 ~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~--~~~~~l~~~~~~~v~G~v~~~~-~~~l~~~~i~ 1119 (1220)
T 2hpi_A 1043 PKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYE--GVSPKLKEDIPLLVLAEVEKGE-ELRVLAQAVW 1119 (1220)
T ss_dssp CEEEEEEEECCC------------CEEEEETTEEEEEC---------------CTTCEEEEEEEEC------CEEEEEEE
T ss_pred CeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHH--HHHHHhccCCEEEEEEEEEECC-CcEEEEeeee
Confidence 457899999887633 2357789999999999999976432 2345689999999999997543 5678888877
Q ss_pred eCC
Q 024592 143 PII 145 (265)
Q Consensus 143 ~v~ 145 (265)
+++
T Consensus 1120 ~l~ 1122 (1220)
T 2hpi_A 1120 TLE 1122 (1220)
T ss_dssp EHH
T ss_pred cHH
Confidence 553
No 64
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.38 E-value=0.047 Score=44.27 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.+++++.+||++|+.. ..++..+|++.+++++..|+..|..|.++|.|-
T Consensus 24 ~ld~~d~~IL~~L~~~------~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 24 PLDEIDKKIIKILQND------GKAPLREISKITGLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4778999999999863 358999999999999999999999999999983
No 65
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.37 E-value=0.038 Score=43.54 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=43.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.++..+.+||++|++. ..++..+|++.++++...|+..|..|.++|.|-
T Consensus 4 ~ld~~~~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 4 PLDEIDKKIIKILQND------GKAPLREISKITGLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred CcCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4678899999999863 368999999999999999999999999999984
No 66
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=94.31 E-value=0.044 Score=40.75 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred Cc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 221 GV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 221 Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
-+ +..+|++.|+++...|+++|..|.++|.|+.
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35 9999999999999999999999999999987
No 67
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=94.30 E-value=0.045 Score=39.13 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=42.5
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEE
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IY 252 (265)
..+..+||++++.. .+||+-++|...+ +++.++.-++|..|..+|.|=
T Consensus 13 ~~ie~~IL~l~~~~-----P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkie 61 (81)
T 2dk8_A 13 VEIENRIIELCHQF-----PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLD 61 (81)
T ss_dssp HHHHHHHHHHHHHC-----SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHhC-----CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeE
Confidence 46888999999874 4799999999999 589999999999999988763
No 68
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.28 E-value=0.1 Score=39.59 Aligned_cols=55 Identities=15% Similarity=0.327 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... ...+++..+|++.++++...|..+|+.|.+.|.|.. -|.
T Consensus 31 ~lt~~~~~iL~~l~~~----~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRN----KNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp TCCHHHHHHHHHHHHT----TTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHC----CCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 4677888899999763 234899999999999999999999999999999998 553
No 69
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.26 E-value=0.11 Score=36.33 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=47.1
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC----CCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN----LPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~----~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
.+++..+..||.+|... .++++.+|++.++ ++...|...|+.|.+.|.|-. -|..
T Consensus 5 ~~lt~~e~~vL~~L~~~------~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr 64 (82)
T 1p6r_A 5 PQISDAELEVMKVIWKH------SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGR 64 (82)
T ss_dssp CCCCHHHHHHHHHHHTS------SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHcC------CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 35788999999999762 3799999999995 789999999999999999987 5554
No 70
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=94.21 E-value=0.81 Score=35.00 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=51.2
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCC-eEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEeeeCCC
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIID 146 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d 146 (265)
+.|+|||+|.++..... +++|.++-| .|.|+.-..-+ + ..+.||.|+|++.. +..|.+.......+
T Consensus 23 k~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~------~--~l~~~vEViG~V~~---~~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD------E--EISGIVEVVGRVTA---KATILCTSYVQFKE 89 (121)
T ss_dssp CEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS------S--CCCSEEEEEEEECT---TSCEEEEEEEECCC
T ss_pred CeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC------c--ccCcEEEEEEEECC---CCeEEEEEEEecCC
Confidence 78999999998865444 456766654 68777542111 1 22569999999974 56777777776654
Q ss_pred ----hh-HHHHHHHHHHHH
Q 024592 147 ----FN-EITSHFVECIYV 160 (265)
Q Consensus 147 ----~N-ei~~H~Levi~~ 160 (265)
++ +..-++.+.++.
T Consensus 90 ~~~~fD~~~yn~lv~l~~~ 108 (121)
T 3kdf_A 90 DSHPFDLGLYNEAVKIIHD 108 (121)
T ss_dssp SSSCCCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHhc
Confidence 44 333444555444
No 71
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.10 E-value=0.1 Score=39.70 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 28 ~lt~~~~~vL~~l~~~----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 28 DITNEQGHTLGYLYAH----QQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp TCCHHHHHHHHHHHHS----TTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHhc----CCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCC
Confidence 5678888999999763 246999999999999999999999999999999998 553
No 72
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.98 E-value=0.059 Score=41.39 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
+++..+..+|.+|.... ....++++.+|++.++++...|..+|+.|.++|.|.... ..|..|
T Consensus 10 ~lt~~~~~~L~~l~~l~--~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~-~~~~Lt 71 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYN--DSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE-DGVWIT 71 (139)
T ss_dssp -CCHHHHHHHHHHHHHH--TTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred hcCHHHHHHHHHHHHHH--hcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC-CeEEEC
Confidence 45666777777664321 123579999999999999999999999999999998722 455554
No 73
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=93.90 E-value=0.45 Score=35.65 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=39.8
Q ss_pred eEEEEEEEEEE-----eee-CCCeEEEEEE-----cCCCeEEEEEecccccccccccccCCCCEEEEEEEeeee
Q 024592 68 NTITVVGIVCD-----MQD-KEPQFIFLID-----DGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAF 130 (265)
Q Consensus 68 ~~V~iVG~V~~-----v~~-~~t~~~y~Ld-----DgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f 130 (265)
++|.|+|++.. .+. .....+|+|. |.+--|.|..|..-+. ...+..|+.|.|.|++++|
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe----~~~~~kG~~v~v~G~lrsy 81 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE----GMNLEVGTRVKIEGQLRSY 81 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST----TCCCCTTCEEEEEEEEEEE
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh----HHhhcCCCEEEEEEEEEec
Confidence 67888888844 112 2245555554 4455699999976543 2335689999999999875
No 74
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.78 E-value=0.094 Score=39.75 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 35 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 88 (140)
T 2nnn_A 35 GLTPTQWAALVRLGET------GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADP 88 (140)
T ss_dssp CCCHHHHHHHHHHHHH------SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 4667888899999753 2899999999999999999999999999999998 654
No 75
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.76 E-value=0.16 Score=38.68 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHh-cCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFL-RRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i-~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+| .. ..+++..+|++.++++...|..+|+.|.+.|.|.. .|.
T Consensus 34 ~l~~~~~~iL~~l~~~------~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 34 GLSQARWLVLLHLARH------RDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp CCTTTHHHHHHHHHHC------SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred CCCHHHHHHHHHHHHc------CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCC
Confidence 4667788899998 54 24799999999999999999999999999999988 553
No 76
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.65 E-value=0.18 Score=36.34 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHH----HHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVI----SQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I----~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+| ++.++++...|...|+.|++.|.|.. .|.
T Consensus 5 ~lt~~q~~iL~~l~~~------~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDN------EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp SSBCHHHHHHHHHTTC------TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 5677888999999652 47899999 88889999999999999999999998 665
No 77
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=93.56 E-value=0.077 Score=40.35 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .+
T Consensus 28 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 28 GISLTRYSILQTLLKD------APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp SSCHHHHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 4567788899999753 3799999999999999999999999999999988 55
No 78
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=93.47 E-value=0.21 Score=38.19 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.=+ +..+|+++|+++...|++||..|.++|.|+.
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 69 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA 69 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE
Confidence 345 5999999999999999999999999999987
No 79
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.42 E-value=0.16 Score=38.33 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=46.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 26 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 26 NLTDAQVACLLRIHRE------PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp TCCHHHHHHHHHHHHS------TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 5677888899999752 4799999999999999999999999999999998 654
No 80
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.37 E-value=0.13 Score=37.14 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+..++..+... +.+++..+|++.++++...|...|+.|.+.|.|.. -+
T Consensus 18 ~l~~~~~~~l~~l~~~-----~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEI-----EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp TCCHHHHHHHHHHHHH-----CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCHHHHHHHHHHHHc-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 4556666666554321 24799999999999999999999999999999998 54
No 81
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=93.34 E-value=0.1 Score=38.75 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=45.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t~ 263 (265)
+.+..||.+|.+ .++++.+|++.++++...|...|..|.+.|.|.. -+.. .|+.+.
T Consensus 25 ~~r~~IL~~L~~-------~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 83 (108)
T 2kko_A 25 GRRLQILDLLAQ-------GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAG 83 (108)
T ss_dssp STTHHHHHHHTT-------CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHHHc-------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 355678888853 3689999999999999999999999999999987 6554 455543
No 82
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.31 E-value=0.082 Score=45.48 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeecc
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSAV 263 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t~ 263 (265)
+++..+..||.+|.+. .++++.+|++.++++.+.+...|..|.+.|.|-. -....|..|.
T Consensus 149 ~L~~~~~~IL~~L~~~------~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT~ 209 (244)
T 2wte_A 149 DYSREEMKLLNVLYET------KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELNE 209 (244)
T ss_dssp CCCHHHHHHHHHHHHH------TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEECH
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEECH
Confidence 6788899999998653 3799999999999999999999999999999987 4556677664
No 83
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.30 E-value=0.27 Score=40.24 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCeEEEEEecccccc-----c--------ccccc----c--CCCC--EEEEEEEeeeeCCc--cEEEEEEe
Q 024592 85 QFIFLIDDGTGRIECSRWAHEQME-----F--------NEVNQ----I--SKGM--YVRVYGHLKAFQDK--RSLNAYSL 141 (265)
Q Consensus 85 ~~~y~LdDgTG~I~~~~w~~~~~~-----~--------~~~~~----~--~~g~--yVrV~G~i~~f~~~--~~i~~~~i 141 (265)
.+.+.|.|.||.+.|..|.+.+.. . ..... + ..+. .+++..+...|+++ ...++..+
T Consensus 80 ~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v~~~ 159 (181)
T 1l1o_C 80 ILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDV 159 (181)
T ss_dssp EEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEEEEe
Confidence 467899999999999999764321 0 00000 1 1233 35555566678766 56888889
Q ss_pred eeCCChhHHHHHHHHHHHHH
Q 024592 142 RPIIDFNEITSHFVECIYVQ 161 (265)
Q Consensus 142 ~~v~d~Nei~~H~Levi~~~ 161 (265)
.|| |+.+..-|+|+.|...
T Consensus 160 ~~v-d~~~e~~~L~~~i~~~ 178 (181)
T 1l1o_C 160 KPV-DYREYGRRLVMSIRRS 178 (181)
T ss_dssp EEC-CHHHHHHHHHHHHHHH
T ss_pred eeC-CHHHHHHHHHHHHHHh
Confidence 998 6788899999998643
No 84
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=93.22 E-value=0.9 Score=39.84 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred eEEEEEEEEEEeee----C--CCeEEEEEEcCCC-eEEEEEeccccccccccccc-CCCCEEEEE-EEeeeeCCccEEEE
Q 024592 68 NTITVVGIVCDMQD----K--EPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQI-SKGMYVRVY-GHLKAFQDKRSLNA 138 (265)
Q Consensus 68 ~~V~iVG~V~~v~~----~--~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~-~~g~yVrV~-G~i~~f~~~~~i~~ 138 (265)
..|.++|+|+++.. + .-.++|+|-|.+- .|.|.+|.... +..+.+ .+|+.|++. -+|+.|+++.++..
T Consensus 16 ~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~---~~LP~v~~~GDII~l~~vki~~~~g~~~~v~ 92 (294)
T 1xjv_A 16 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNY---EALPIIYKNGDIVRFHRLKIQVYKKETQGIT 92 (294)
T ss_dssp EEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSG---GGSCCCCSTTCEEEEEEEEEEEETTEEEEEE
T ss_pred CeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCCh---HHCCCCCCCCCEEEEEEEEEEEECCeEEEEc
Confidence 56889999988753 2 2368999999652 39999997643 246666 999999998 45889999877644
No 85
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.21 E-value=0.1 Score=40.52 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 44 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 44 DLTYPQYLVMLVLWET------DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp TCCHHHHHHHHHHHHS------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHhC------CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCc
Confidence 5677888899998752 3799999999999999999999999999999998 553
No 86
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.13 E-value=0.11 Score=39.62 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=46.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 30 ~l~~~~~~iL~~l~~~------~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 30 GITPAQFDILQKIYFE------GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp TCCHHHHHHHHHHHHH------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 4677888899999753 3799999999999999999999999999999998 653
No 87
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=93.12 E-value=0.17 Score=37.91 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=31.8
Q ss_pred Cc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 221 GV-HRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 221 Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
-+ +..+|+++|+++...|++||..|.++|.|+...
T Consensus 32 ~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 32 MIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 45 899999999999999999999999999998743
No 88
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=93.12 E-value=0.25 Score=38.20 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 40 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 93 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDN------DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp TCCHHHHHHHHHHSSC------SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCHHHHHHHHHHHHC------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 5677888999999753 3799999999999999999999999999999987 553
No 89
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=93.07 E-value=0.14 Score=49.94 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=51.7
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEeccccc-c-cccccccCCCCEEEEEEEeeee----------CCccE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQM-E-FNEVNQISKGMYVRVYGHLKAF----------QDKRS 135 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~-~-~~~~~~~~~g~yVrV~G~i~~f----------~~~~~ 135 (265)
..|+|.|||.+++.. +.+.|.|++|.|.|..-.+... + .+....+..|+.|.|.|.|+.- .+...
T Consensus 25 ~~V~l~GwV~~~R~~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiE 101 (617)
T 4ah6_A 25 QEVTLCGWIQYRRQN---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIE 101 (617)
T ss_dssp CEEEEEEEECCCCTT---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEE
T ss_pred CEEEEEEEeeeecCe---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEE
Confidence 479999999988643 4678999999999886433211 0 0124568999999999999752 24567
Q ss_pred EEEEEeee
Q 024592 136 LNAYSLRP 143 (265)
Q Consensus 136 i~~~~i~~ 143 (265)
|.+..+..
T Consensus 102 l~~~~i~v 109 (617)
T 4ah6_A 102 IKVKTAEL 109 (617)
T ss_dssp EEEEEEEE
T ss_pred EEEeEEEE
Confidence 77766654
No 90
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.00 E-value=0.19 Score=38.48 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 33 glt~~q~~vL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEND------EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp TCCHHHHHHHHHSCTT------CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 5778888999999752 4899999999999999999999999999999998 554
No 91
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=92.97 E-value=0.46 Score=37.14 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=44.0
Q ss_pred eEEEEEEEEEE--eeeC--CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeee
Q 024592 68 NTITVVGIVCD--MQDK--EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA 129 (265)
Q Consensus 68 ~~V~iVG~V~~--v~~~--~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~ 129 (265)
..|+|-|.|.. +... ...+.|.|.|+...|.|.+--. .++.|++|.-|-|.|++..
T Consensus 29 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~Gi------lPDlFrEGqgVVa~G~l~~ 88 (136)
T 1sr3_A 29 QRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGI------LPDLFREGQGVVVQGELEK 88 (136)
T ss_dssp SEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESC------CCTTCCTTSEEEEEEEECS
T ss_pred CEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCC------CCccccCCCeEEEEEEECC
Confidence 57889999973 5443 5689999999988898885432 3577899999999999853
No 92
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.85 E-value=0.091 Score=38.89 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=40.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+...+|+..+..+ ...++..+|++.++++...|+++|..|.++|.|..
T Consensus 18 ~~~l~Il~~l~~~-----g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 18 DDVIDVLRILLDK-----GTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp STTHHHHHHHHHH-----CSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEE
T ss_pred hHHHHHHHHHHHc-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4666788877543 22489999999999999999999999999999977
No 93
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=92.77 E-value=0.2 Score=38.22 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 26 ~lt~~~~~iL~~l~~~------~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCEN------PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp TCTTTHHHHHHHHHHS------TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHC------cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 4667788899988752 3899999999999999999999999999999998 654
No 94
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.77 E-value=0.19 Score=36.92 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=45.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
+.+..||.+|.. .++++.+|++.++++.+.|...|..|.+.|.|.. -+.. +|..+
T Consensus 26 ~~r~~IL~~L~~-------~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~ 83 (106)
T 1r1u_A 26 YNRIRIMELLSV-------SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLD 83 (106)
T ss_dssp HHHHHHHHHHHH-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 567789988862 2589999999999999999999999999999988 6544 45544
No 95
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=92.74 E-value=0.2 Score=38.71 Aligned_cols=53 Identities=8% Similarity=0.248 Sum_probs=39.2
Q ss_pred hhHHHHHHHhcCc---CCCCCCCCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRP---EFLANNNGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~---~~~~~~~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
++-.+|++.|+.. +.....+=+ +..++++.|+.+...||+|+..|..+|.|+.
T Consensus 14 PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 4555565555431 111223346 6889999999999999999999999999987
No 96
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=92.74 E-value=0.13 Score=40.09 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|
T Consensus 46 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 46 GMAIPEWRVITILALY------PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp CCCHHHHHHHHHHHHS------TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecC
Confidence 5677888899998752 3799999999999999999999999999999987 54
No 97
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.73 E-value=0.29 Score=37.08 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=45.5
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCC-eEEEEEecccccccccccccCCCCEEEEEEEeeeeCCc---cEEEEEEeee
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDK---RSLNAYSLRP 143 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~---~~i~~~~i~~ 143 (265)
..|+|||+|.++.. -+++|..++| .|.|+.-.+ ..++.+.||.|+|++..-.+. ..|.+....+
T Consensus 19 ~~VrivGkV~~~~g----~~~~l~s~d~~~Vtv~l~~~--------~~~~~~~~vEViG~V~~~~~~~~~~~I~~~~~~~ 86 (114)
T 4gop_A 19 QTVRIVGKVHKVTG----NTLLMQTSDLGNVEIAMTPD--------SDVSSSTFVEVTGKVSDAGSSFQANQIREFTTVD 86 (114)
T ss_dssp SEEEEEEEEEEEET----TEEEEECTTSCEEEEECCSS--------CCGGGCSEEEEEEEECTTSSEEEEEEEEECSCCC
T ss_pred CeEEEEEEEeeeCC----CEEEEEeCCCCEEEEEeCCC--------CCcccCcEEEEEEEEcCCCCcccCCeEEEEEEEe
Confidence 68999999999874 4678887764 687775322 234578999999999854332 6666655544
Q ss_pred CC
Q 024592 144 II 145 (265)
Q Consensus 144 v~ 145 (265)
.-
T Consensus 87 ~g 88 (114)
T 4gop_A 87 CG 88 (114)
T ss_dssp --
T ss_pred CC
Confidence 43
No 98
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.72 E-value=0.37 Score=36.66 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+-.||.+|. . .+++..+|++.++++...|...|+.|.+.|.|.. .|
T Consensus 34 ~l~~~~~~iL~~l~-~------~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~ 85 (146)
T 2gxg_A 34 NLSYLDFLVLRATS-D------GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRD 85 (146)
T ss_dssp TCCHHHHHHHHHHT-T------SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHh-c------CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecC
Confidence 46778888999986 3 3799999999999999999999999999999988 55
No 99
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.72 E-value=0.19 Score=36.96 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=44.9
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
+.+..||.+|. . .++++.+|++.++++...|...|..|.+.|.|.. -+.. .|..|
T Consensus 21 ~~r~~IL~~L~-~------~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~ 78 (114)
T 2oqg_A 21 ETRWEILTELG-R------ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRAL 78 (114)
T ss_dssp HHHHHHHHHHH-H------SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred hHHHHHHHHHH-c------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEec
Confidence 57788999983 2 2589999999999999999999999999999987 5543 25544
No 100
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=92.71 E-value=0.14 Score=39.27 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|
T Consensus 37 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 89 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSA------SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
T ss_dssp TCCHHHHHHHHHHHHS------SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCCHHHHHHHHHHHcC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecC
Confidence 5778888999999753 2899999999999999999999999999999987 55
No 101
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=92.70 E-value=0.27 Score=37.64 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEee
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYSI 254 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsi 254 (265)
.=+ +..+|+++|+++...|++||..|..+|.|+..
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 346 89999999999999999999999999999873
No 102
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.68 E-value=0.11 Score=38.02 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=37.3
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeeccC
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAVN 264 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~~ 264 (265)
|+...+|+..+++++..++..+++|.+.|.|-..+. .|..|.-
T Consensus 20 ~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~-~~~LT~k 62 (95)
T 1r7j_A 20 GSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK-QYMLTKK 62 (95)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-EEEECHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC-eeEEChh
Confidence 389999999999999999999999999999987433 4887754
No 103
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.66 E-value=0.28 Score=37.41 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
-+++..+-.||.+|... |++..+|++.++++...|...|+.|.+.|.|.. .|
T Consensus 34 ~~lt~~~~~iL~~l~~~-------~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEE-------SLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp SCCCHHHHHHHHHHTTC-------CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred cCCCHHHHHHHHHHHhC-------CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccC
Confidence 46788999999999752 299999999999999999999999999999988 64
No 104
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.074 Score=40.21 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEE-Eeee
Q 024592 84 PQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYG-HLKA 129 (265)
Q Consensus 84 t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G-~i~~ 129 (265)
..+.+.|-|.||.|.|..|.+... .-.+.|++|+.+.|.+ +|+.
T Consensus 40 ~~~~~~L~De~G~I~at~~~~~~~--~f~~~l~eG~vy~Is~~~V~~ 84 (114)
T 1ynx_A 40 KLFNVNFLDTSGEIRATAFNDFAT--KFNEILQEGKVYYVSKAKLQP 84 (114)
T ss_dssp EEEEEEEEETTEEEEEEECHHHHH--HHHHHSCSSSEEEEESCEEEE
T ss_pred eEEEEEEECCCCeEEEEECHHHHH--HHHhhcccCcEEEECCcEEEE
Confidence 468889999999999999986432 2245689999888875 3444
No 105
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.57 E-value=0.22 Score=39.53 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.+++..+-.||.+|... ..++++.+|++.++++...|...|+.|++.|.|.. .|.
T Consensus 49 ~glt~~q~~vL~~L~~~-----~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~ 104 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQL-----PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA 104 (166)
T ss_dssp TTCCHHHHHHHHHHHHS-----CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---
T ss_pred cCCCHHHHHHHHHHHHc-----CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCC
Confidence 46788888999998652 34799999999999999999999999999999998 654
No 106
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=92.56 E-value=0.63 Score=36.40 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=47.9
Q ss_pred eEEEEEEEEEE--eeeC--CCeEEEEEEc-CCCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEe
Q 024592 68 NTITVVGIVCD--MQDK--EPQFIFLIDD-GTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSL 141 (265)
Q Consensus 68 ~~V~iVG~V~~--v~~~--~t~~~y~LdD-gTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i 141 (265)
..|+|.|.|.. +... ...+.|.|.| +...|.|.+--. .++.|++|.-|-|.|++.. .-.+.|..|
T Consensus 33 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~Gi------lPDlFrEGqgVVa~G~l~~---~g~F~A~eV 102 (136)
T 1j6q_A 33 QRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDL------LPDLFREGQGIVAQGVLGE---DGKLAATEV 102 (136)
T ss_dssp CEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSC------CTTSCCSSSEEEEEEEECS---TTSEEEEEE
T ss_pred CEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCC------CCccccCCCeEEEEEEECC---CCeEEEEEE
Confidence 57899999963 5543 5689999999 777898885432 3577999999999999853 234555554
No 107
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=92.49 E-value=0.18 Score=45.09 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=47.2
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceee
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKS 261 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~ 261 (265)
++.+++||++|++. ...-++-++|+++|+++...|.+.|..|.++|..-. +...-|+.
T Consensus 2 ~~~~~~iL~~L~~~----~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L 60 (323)
T 3rkx_A 2 SKYSQDVLQLLYKN----KPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLL 60 (323)
T ss_dssp -CHHHHHHHHHHHH----TTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEE
T ss_pred chHHHHHHHHHHhC----CCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEE
Confidence 45788999999752 234689999999999999999999999999999555 66666664
No 108
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=92.42 E-value=0.11 Score=39.49 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 34 ~lt~~q~~vL~~l~~~----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 89 (127)
T 2frh_A 34 SISFEEFAVLTYISEN----KEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE 89 (127)
T ss_dssp CCCHHHHHHHHHHHHT----CCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred CCCHHHHHHHHHHHhc----cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 5677888899998753 245899999999999999999999999999999987 554
No 109
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=92.34 E-value=1.4 Score=34.64 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=45.1
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCC-eEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEeeeCCC
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSLRPIID 146 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i~~v~d 146 (265)
..|+|||+|.++.... -.++|..+.| .|.|+.-.. -....+.||.|+|++.. +..|.+..+.+..|
T Consensus 44 k~VriVGkV~~~~~~G--~~~~l~s~Dg~~VtV~l~~p--------L~~~~~~~VEViG~V~~---~~tI~~~~~~~fGd 110 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTG--KMFILSDGEGKNGTIELMEP--------LDEEISGIVEVVGRVTA---KATILCTSYVQFKE 110 (142)
T ss_dssp CEEEEEEEEEEECTTS--SEEEEECTTSCEEEEECSSC--------CSSCCCSEEEEEEEECT---TSCEEEEEEEECCC
T ss_pred CEEEEEEEEeEEcCCC--CEEEEEeCCCcEEEEEeCCC--------CCccCCCEEEEEEEECC---CCcEEEEEEEecCC
Confidence 6899999999985433 4456776654 688775211 01134789999999955 56777777777665
No 110
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.33 E-value=0.18 Score=38.75 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=43.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++.-+-.||-.|.... .....+.+..+|++++++++.+|..+|+.|++.|.|-- .+
T Consensus 29 gLt~~e~~vll~L~~~~-~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFF-EEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TCCHHHHHHHHHHHHHH-TTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 46666666776665421 12345689999999999999999999999999999977 44
No 111
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=92.31 E-value=0.22 Score=42.33 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=45.2
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeec
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSA 262 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t 262 (265)
.||++|.+. +.++++.||++.++++...+...|..|.+.|.|.. -++..|..+
T Consensus 10 ~iL~~l~~~-----~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg 63 (241)
T 2xrn_A 10 SIMRALGSH-----PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLG 63 (241)
T ss_dssp HHHHHHHTC-----TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEEC
T ss_pred HHHHHHHhC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEEC
Confidence 478887652 34799999999999999999999999999999998 666788764
No 112
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.29 E-value=0.1 Score=37.48 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 219 NNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
-.=++++.|++.|+++++++.+.|..|+.+|.|+- ||.-
T Consensus 28 Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred cCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 45789999999999999999999999999999999 9974
No 113
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=92.29 E-value=0.24 Score=38.08 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=46.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 37 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLT------PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp TCCHHHHHHHHHHHHS------TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCc
Confidence 5677888999999753 3799999999999999999999999999999998 553
No 114
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=92.24 E-value=0.2 Score=38.68 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++.-+-.||.+|... +.+++..+|++.++++...|...|+.|++.|.|.. .|.
T Consensus 36 glt~~q~~vL~~l~~~-----~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQ-----AEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp TCCHHHHHHHHHHHHS-----TTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC----
T ss_pred CCCHHHHHHHHHHHhC-----CCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCc
Confidence 5677888899988642 34689999999999999999999999999999988 554
No 115
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.22 E-value=0.26 Score=35.50 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=42.1
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+.+..|+.+|.+ .++++.+|++.++++...|...|..|.+.|.|-. -+.
T Consensus 23 ~~r~~Il~~L~~-------~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 23 ERRLQILCMLHN-------QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp HHHHHHHHHTTT-------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHhc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 567788888864 3689999999999999999999999999999976 443
No 116
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=92.20 E-value=0.27 Score=37.58 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=46.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 28 ~lt~~q~~iL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 81 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATE------GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGE 81 (145)
T ss_dssp TCCHHHHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCS
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 5778888999999753 2699999999999999999999999999999998 554
No 117
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=92.20 E-value=0.4 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEee
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYSI 254 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsi 254 (265)
.=+ +..+|+++|+++...||+||..|..+|.|+..
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 345 78999999999999999999999999999873
No 118
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.13 E-value=0.34 Score=36.86 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+..||.+|... +.+++..+|++.++++.+.|...|+.|.+.|.|.. .|.
T Consensus 23 gl~~~~~~il~~L~~~-----~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~ 77 (152)
T 1ku9_A 23 GLNKSVGAVYAILYLS-----DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIK 77 (152)
T ss_dssp TCCHHHHHHHHHHHHC-----SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCChhHHHHHHHHHHc-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4667788899888421 24799999999999999999999999999999988 543
No 119
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=92.11 E-value=0.24 Score=37.68 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=43.1
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec-CCceeecc
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID-EFHYKSAV 263 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD-d~hyk~t~ 263 (265)
.-.||.+|... ..+..++..+|+++++++...++++|..|...|.|.+ -. .-.|..+.
T Consensus 11 al~iL~~la~~---~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 11 GLTIMIELAKK---HGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp HHHHHHHHHHT---TTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred HHHHHHHHHhC---CCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 34566666542 1245689999999999999999999999999999988 33 34576543
No 120
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.08 E-value=0.18 Score=38.59 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
+++..+-.||.+|... .+ +..+|++.++++...|...|+.|.+.|.|.. .|..
T Consensus 34 ~lt~~~~~iL~~l~~~------~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 87 (144)
T 3f3x_A 34 NLSYLDFSILKATSEE------PR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSK 87 (144)
T ss_dssp SCCHHHHHHHHHHHHS------CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCCHHHHHHHHHHHHC------CC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCC
Confidence 5677888899999753 24 9999999999999999999999999999998 6654
No 121
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=92.05 E-value=0.16 Score=38.76 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 34 ~lt~~~~~vL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQ------RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp CCCHHHHHHHHHHHHT------TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHhC------CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 5778888999999763 3899999999999999999999999999999998 654
No 122
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=91.95 E-value=0.23 Score=38.71 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.- .|.
T Consensus 47 ~lt~~q~~vL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYRE------DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp TCCTTTHHHHHHHHHS------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 4667778899998652 4899999999999999999999999999999998 654
No 123
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=91.94 E-value=0.21 Score=38.11 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 34 ~lt~~~~~iL~~l~~~------~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 87 (143)
T 3oop_A 34 DVTPEQWSVLEGIEAN------EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp SSCHHHHHHHHHHHHH------SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCC
Confidence 5678888999999753 4899999999999999999999999999999998 553
No 124
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.94 E-value=0.23 Score=37.57 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 33 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~ 86 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQ------GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp TCCHHHHHHHHHHHHH------CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 4677888899998753 3799999999999999999999999999999988 554
No 125
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=91.92 E-value=0.15 Score=36.51 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=41.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+.+..||.+|... .+++..+|++.++++...|...|..|.+.|.|..
T Consensus 16 ~~~~~iL~~L~~~------~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 16 PVRLGIMIFLLPR------RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHHHHHHHHH------SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHhc------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5677899888642 3689999999999999999999999999999986
No 126
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=91.91 E-value=0.26 Score=38.43 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 49 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 49 GLSTAKMRALAILSAK------DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp TCCHHHHHHHHHHHHS------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 5677888999999752 3799999999999999999999999999999988 553
No 127
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=91.90 E-value=1.8 Score=31.79 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=47.4
Q ss_pred EeEEEEEEEEEEe---eeC---CCeEEEEEE-----cCCCe-------EEEEEecccccccccccccCCCCEEEEEEEee
Q 024592 67 VNTITVVGIVCDM---QDK---EPQFIFLID-----DGTGR-------IECSRWAHEQMEFNEVNQISKGMYVRVYGHLK 128 (265)
Q Consensus 67 v~~V~iVG~V~~v---~~~---~t~~~y~Ld-----DgTG~-------I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~ 128 (265)
++.|.|+|.+..- +.. ...+.|.|. +.|+- |.|..|-..+. ....-+..|+.|.|.|+|+
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae--~~~~~l~KG~~V~V~G~L~ 79 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQ--AITHSITVGSRITVQGFIS 79 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTH--HHHTTCCTTCEEEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHH--HHHhhCCCCCEEEEEEEEE
Confidence 3678888888653 211 234555552 34677 99999976442 1234589999999999998
Q ss_pred eeC---Cc--cEEEEEEeeeC
Q 024592 129 AFQ---DK--RSLNAYSLRPI 144 (265)
Q Consensus 129 ~f~---~~--~~i~~~~i~~v 144 (265)
.-. |. ..|.+..|..+
T Consensus 80 ~~~~~~G~~r~~v~~~~i~~l 100 (104)
T 1txy_A 80 CHKAKNGLSKMVLHAEQIELI 100 (104)
T ss_dssp C--------CCEEEEEEEEEC
T ss_pred eccCCCCCEEEEEEEEEEEEC
Confidence 742 21 23566666555
No 128
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=91.89 E-value=0.27 Score=37.66 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 39 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 39 PITPPQFVALQWLLEE------GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp SSCHHHHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 5677888899998753 3799999999999999999999999999999988 553
No 129
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=91.85 E-value=0.33 Score=36.65 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 31 ~lt~~~~~iL~~l~~~------~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCA------ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp TSCHHHHHHHHHHHHH------SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCHHHHHHHHHHHhc------CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCc
Confidence 4677888899998653 3789999999999999999999999999999998 554
No 130
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=91.83 E-value=0.46 Score=35.96 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=42.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCcee
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYK 260 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk 260 (265)
+..+|++.++. .+..+.++++.++++++.+++.|..|..+|.|..++++.|-
T Consensus 8 l~~~i~~~~~~-------~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~ 59 (121)
T 2pjp_A 8 IWQKAEPLFGD-------EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYY 59 (121)
T ss_dssp HHHHHGGGCSS-------SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred HHHHHHHHHHh-------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceE
Confidence 44555655532 46799999999999999999999999999999996666654
No 131
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=91.81 E-value=0.36 Score=40.94 Aligned_cols=66 Identities=18% Similarity=0.402 Sum_probs=46.4
Q ss_pred eEEEEEEEEEEeee------C--C---CeEEEEEEcCCCe-EEEEEecccccccccccccCCCCEEEEEE-EeeeeCCcc
Q 024592 68 NTITVVGIVCDMQD------K--E---PQFIFLIDDGTGR-IECSRWAHEQMEFNEVNQISKGMYVRVYG-HLKAFQDKR 134 (265)
Q Consensus 68 ~~V~iVG~V~~v~~------~--~---t~~~y~LdDgTG~-I~~~~w~~~~~~~~~~~~~~~g~yVrV~G-~i~~f~~~~ 134 (265)
..|.|+|+|.++.. . . ....+.|.|.||. |.|.+|.+.+.. .....|..|.+.| +++.|++ +
T Consensus 139 ~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~----~~~~~~~vv~i~~~~v~~f~g-~ 213 (246)
T 1jmc_A 139 SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADK----FDGSRQPVLAIKGARVSDFGG-R 213 (246)
T ss_dssp CEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHH----CCCTTCCEEEEEEEEEECTTS-S
T ss_pred CceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhh----cccCCCCEEEEEEEEEEecCC-e
Confidence 45788898887643 1 1 3678899999995 999999875431 1246677777665 4778854 6
Q ss_pred EEEE
Q 024592 135 SLNA 138 (265)
Q Consensus 135 ~i~~ 138 (265)
.|++
T Consensus 214 ~ls~ 217 (246)
T 1jmc_A 214 SLSV 217 (246)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7765
No 132
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=91.78 E-value=0.51 Score=34.16 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=45.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t~ 263 (265)
+.+..||..|.+ ..+++.+|++.++++...|...|..|.+.|.|-. -+.. +|..|.
T Consensus 23 ~~r~~Il~~L~~-------~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE-------GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT-------CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 567789998864 1489999999999999999999999999999987 5443 455554
No 133
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=91.71 E-value=0.26 Score=38.68 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|.. .|.
T Consensus 43 glt~~q~~iL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 96 (162)
T 3k0l_A 43 EISLPQFTALSVLAAK------PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDP 96 (162)
T ss_dssp TCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCC
Confidence 5778888999999753 3899999999999999999999999999999998 654
No 134
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.63 E-value=0.22 Score=38.46 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 34 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKH------GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TCCHHHHHHHHHHHHH------SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 4677888899999753 3799999999999999999999999999999998 553
No 135
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=91.58 E-value=0.25 Score=39.14 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=46.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 42 ~lt~~~~~iL~~L~~~------~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 42 NITIPQFRTLVILSNH------GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp SCCHHHHHHHHHHHHH------CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 5778888999999753 3799999999999999999999999999999988 654
No 136
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=91.57 E-value=0.24 Score=38.29 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|++.|.|..
T Consensus 38 ~lt~~~~~iL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQLAMINVIYST------PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHS------TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4677888899999753 3799999999999999999999999999999975
No 137
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=91.55 E-value=0.41 Score=40.60 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=37.5
Q ss_pred hHHHHHHHhcCcCCCCCCCCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+.+.|.+.|.+.. .....-+ +..+++++++.+...||+||+.|.++|.|+.
T Consensus 14 i~~~l~~~I~~g~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 65 (236)
T 3edp_A 14 IASKIKDSINRDE-YKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVR 65 (236)
T ss_dssp HHHHHHHHHHTTS-SCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCC-CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4444555554421 1223456 7899999999999999999999999999987
No 138
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=91.53 E-value=0.23 Score=37.60 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=43.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
+.+..||.+|... .++++.+|++.++++.+.|...|..|.+.|.|-. -+.. .|..+
T Consensus 42 ~~rl~IL~~L~~~------~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~ 100 (122)
T 1u2w_A 42 ENRAKITYALCQD------EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLG 100 (122)
T ss_dssp HHHHHHHHHHHHS------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred HHHHHHHHHHHHC------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEEC
Confidence 4566788888642 3689999999999999999999999999999987 5433 45554
No 139
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=91.48 E-value=0.11 Score=40.00 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=37.3
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
.++++.+|++.++++...|..+|+.|...|.|...-+-.|..|.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~ 64 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTS 64 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeCceEEEch
Confidence 37999999999999999999999999999999873334566553
No 140
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=91.37 E-value=0.24 Score=42.66 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeec
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSA 262 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t 262 (265)
.||++|.+ .+.++++.||++.++++.+.+...|..|.+.|.|.. -+...|...
T Consensus 10 ~IL~~l~~-----~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG 63 (260)
T 3r4k_A 10 TLLTYFNH-----GRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLG 63 (260)
T ss_dssp HHHTTCBT-----TBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEEC
T ss_pred HHHHHHhh-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcC
Confidence 35666654 246899999999999999999999999999999998 555788754
No 141
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=91.35 E-value=0.77 Score=33.71 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=45.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEEe-ecCC-----ceeeccCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVYS-IDEF-----HYKSAVNA 265 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IYs-iDd~-----hyk~t~~~ 265 (265)
...-.||..|.. ..+++.+|++.+ +++...+...|+.|.+.|.|.. .|.. .|..|..|
T Consensus 14 ~~~~~IL~~L~~-------~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G 78 (107)
T 2hzt_A 14 KWKXVILXHLTH-------GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYG 78 (107)
T ss_dssp TTHHHHHHHHTT-------CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG
T ss_pred ccHHHHHHHHHh-------CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccH
Confidence 345567777742 258999999999 9999999999999999999998 6542 46666543
No 142
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=91.32 E-value=0.21 Score=37.64 Aligned_cols=53 Identities=8% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 30 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 83 (139)
T 3bja_A 30 DISYVQFGVIQVLAKS------GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNP 83 (139)
T ss_dssp TCCHHHHHHHHHHHHS------CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCC
Confidence 5677888899999652 3799999999999999999999999999999988 553
No 143
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=91.22 E-value=1.2 Score=35.52 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=49.0
Q ss_pred EEeEEEEEEEEEE---eeeC---CCeEEEEEE------cC-CC-------eEEEEEecccccccccccccCCCCEEEEEE
Q 024592 66 DVNTITVVGIVCD---MQDK---EPQFIFLID------DG-TG-------RIECSRWAHEQMEFNEVNQISKGMYVRVYG 125 (265)
Q Consensus 66 ~v~~V~iVG~V~~---v~~~---~t~~~y~Ld------Dg-TG-------~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G 125 (265)
.++.|.|+|+|.. ++.. ...+.|+|. |. +| -|.|..|...+. .....|+.|+.|.|.|
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae--~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE--IVGEYLRKGSKIYIEG 84 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHH--HHHHHCCTTCEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHH--HHHhhcCCCCEEEEEE
Confidence 4788999999965 2222 235556552 22 44 378888865332 1223489999999999
Q ss_pred Eeee--eC---Cc----cEEEEEEeeeCCC
Q 024592 126 HLKA--FQ---DK----RSLNAYSLRPIID 146 (265)
Q Consensus 126 ~i~~--f~---~~----~~i~~~~i~~v~d 146 (265)
+|+. |. |+ ..|.+..|..+..
T Consensus 85 ~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~ 114 (158)
T 3tqy_A 85 SLRTRKWQDKNGVDRYTTEIIANEMHMLDN 114 (158)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEEEEEECC-
T ss_pred EEEeeeEECCCCCEEEEEEEEEeEEEEccC
Confidence 9985 53 32 3566666666654
No 144
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.20 E-value=0.27 Score=38.13 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|++.|.|.. .|.
T Consensus 41 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 94 (154)
T 2eth_A 41 DMKTTELYAFLYVALF------GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDP 94 (154)
T ss_dssp HSBHHHHHHHHHHHHH------CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 4677888999999753 2799999999999999999999999999999988 553
No 145
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.12 E-value=0.31 Score=36.67 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=45.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
+.+..||.+|... .+++.+|++.++++...|...|..|.+.|.|.. -+.. .|..+
T Consensus 21 ~~r~~IL~~L~~~-------~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~ 78 (118)
T 2jsc_A 21 PTRCRILVALLDG-------VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALA 78 (118)
T ss_dssp HHHHHHHHHHHTT-------CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEES
T ss_pred HHHHHHHHHHHcC-------CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 5777899988631 368899999999999999999999999999987 5543 45544
No 146
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=91.11 E-value=0.45 Score=37.19 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=43.9
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
+++.+..||++|.+. +.-++.++|.+.+ +++...|-..|+.|.+.|.|-.
T Consensus 20 ~T~qR~~Il~~L~~~-----~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 20 ITPQRHAILEYLVNS-----MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp CCHHHHHHHHHHHHC-----SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 567888999999753 3468999999999 5999999999999999999988
No 147
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=91.05 E-value=0.34 Score=41.63 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeec
Q 024592 206 VLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSA 262 (265)
Q Consensus 206 Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t 262 (265)
||++|.. .+.++++.||++.++++...+...|..|.+.|.|.. -+. .|..+
T Consensus 28 iL~~l~~-----~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~-~Y~lg 79 (260)
T 2o0y_A 28 LLELFDA-----AHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG-SYSLG 79 (260)
T ss_dssp HHTTCBT-----TBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS-CEEEC
T ss_pred HHHHHhh-----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC-eEEec
Confidence 5555543 235899999999999999999999999999999988 444 78753
No 148
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=91.05 E-value=0.25 Score=34.70 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=40.4
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEE
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IY 252 (265)
.++++.|+++|+..+... .=.=+.++++.+ ...+.+|.+++..|++||.+-
T Consensus 2 ee~K~~Ile~l~~k~~~K--skfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 2 EEAKQKVVDFLNSKSGSK--SKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp CHHHHHHHHHHSSHHHHS--SCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHhccccc--ccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 468999999998742111 124468999999 899999999999999999874
No 149
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=90.99 E-value=0.46 Score=31.52 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=37.9
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+|..|.+. ..|++.-|++.+++.+.++-|.+|+.|..+|.+--
T Consensus 7 aLLall~s~-----~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 7 ELLALLTSV-----RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHHC-----TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-----hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 566677653 35999999999999999999999999999998754
No 150
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=90.93 E-value=0.38 Score=38.96 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+.+++..+|++.++++...|...|..|...|.|.. .|.
T Consensus 38 ~lt~~q~~vL~~L~~~----~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 38 ILTSRQYMTILSILHL----PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp SSCHHHHHHHHHHHHS----CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCHHHHHHHHHHHhc----cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 4778899999998753 235899999999999999999999999999999998 654
No 151
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=90.89 E-value=0.25 Score=38.18 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|.. .|.
T Consensus 38 ~lt~~q~~iL~~l~~~------~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEE------NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp TCCHHHHHHHHHHHHS------SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC----
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCC
Confidence 5778888999999652 4899999999999999999999999999999998 553
No 152
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.79 E-value=0.26 Score=45.83 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=47.3
Q ss_pred eEEEEEEEEEEeee------C-----CCeEEEEEEcCCC-eEEEEEecccccccccccccCCCCEEEEEE-EeeeeCCcc
Q 024592 68 NTITVVGIVCDMQD------K-----EPQFIFLIDDGTG-RIECSRWAHEQMEFNEVNQISKGMYVRVYG-HLKAFQDKR 134 (265)
Q Consensus 68 ~~V~iVG~V~~v~~------~-----~t~~~y~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G-~i~~f~~~~ 134 (265)
..|.|+|.|.++.. . .....++|.|.|| +|.|.+|.+.+..-........|..|.+.| +|+.|+|+
T Consensus 134 ~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~- 212 (444)
T 4gop_C 134 QQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR- 212 (444)
T ss_dssp CCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-
T ss_pred CceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-
Confidence 35677888877642 1 1367899999999 799999987543211111256778777665 58889985
Q ss_pred EEEE
Q 024592 135 SLNA 138 (265)
Q Consensus 135 ~i~~ 138 (265)
.|++
T Consensus 213 ~ls~ 216 (444)
T 4gop_C 213 SLSM 216 (444)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6665
No 153
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.77 E-value=0.14 Score=39.55 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|...|.|.. .|.
T Consensus 38 glt~~q~~vL~~l~~~----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 93 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYEN----QESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPE 93 (148)
T ss_dssp TCCHHHHHHHHHHHHH----TTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC---
T ss_pred CCCHHHHHHHHHHHhC----CCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCC
Confidence 5778888999999763 236899999999999999999999999999999987 553
No 154
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=90.56 E-value=0.58 Score=36.10 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=43.8
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
+++.+..||++|.+. .+.-++.++|.+.+ +++...|-..|+.|.+.|.|-.
T Consensus 16 ~T~qR~~Il~~L~~~----~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 16 VTLPRVKILQMLDSA----EQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp CCHHHHHHHHHHHCC-----CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHhC----CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 567888999999863 11468999999998 5999999999999999999987
No 155
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=90.47 E-value=0.42 Score=36.68 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=42.6
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
++.+..||++|.+. +.-++.++|.+.+ +++...|-..|+.|.+.|.|-.
T Consensus 10 T~qR~~Il~~l~~~-----~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 10 TRQRAAISTLLETL-----DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHHC-----CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 56778899999752 3468999999998 6999999999999999999988
No 156
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=90.47 E-value=0.33 Score=37.96 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 50 glt~~q~~vL~~l~~~------~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 103 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAY------GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp TCCHHHHHHHHHHHHH------SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 5777888899999763 3899999999999999999999999999999998 553
No 157
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=90.47 E-value=0.23 Score=39.15 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|+..|+|.. .|.
T Consensus 43 glt~~q~~vL~~l~~~----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSV----HPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp TCCHHHHHHHHHHHHH----TTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCC
Confidence 5778888899999763 135899999999999999999999999999999998 664
No 158
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=90.35 E-value=0.29 Score=37.23 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+-.||.+|... .+++..+|++.++++...|..+|+.|.+.|.|.. .|
T Consensus 34 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDE------SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp TCCHHHHHHHHHHHHS------SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecC
Confidence 4667888899998753 3699999999999999999999999999999988 55
No 159
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=90.28 E-value=0.46 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.-+ +..+++++++.+...||+||+.|.++|.|+.
T Consensus 51 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 85 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG 85 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 456 7899999999999999999999999999987
No 160
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=90.25 E-value=0.67 Score=36.16 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++.-|-.||.+|... +.+++..+|++.++++...|...|+.|+..|.|.- .|.
T Consensus 28 gLt~~q~~vL~~L~~~-----~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~ 82 (151)
T 4aik_A 28 ELTQTHWVTLYNINRL-----PPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA 82 (151)
T ss_dssp CCCHHHHHHHHHHHHS-----CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc-----CCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC
Confidence 5777888899888642 34788899999999999999999999999999997 554
No 161
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=90.23 E-value=1.5 Score=32.85 Aligned_cols=76 Identities=13% Similarity=0.254 Sum_probs=47.0
Q ss_pred EEeEEEEEEEEEEe---e--eCC--CeEEEEEE-------cCCCeEEEEEecccccccccccccCCCCEEEEEEEeee--
Q 024592 66 DVNTITVVGIVCDM---Q--DKE--PQFIFLID-------DGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA-- 129 (265)
Q Consensus 66 ~v~~V~iVG~V~~v---~--~~~--t~~~y~Ld-------DgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~-- 129 (265)
..+.|.|+|.+..= + ... ....|+|. |.|--|.|..|..-++ ....-++.|+.|.|.|+|+.
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE--~~~~yl~KG~~V~VeGrL~~r~ 87 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQ--ELQDRCRLNDEVVLEGRLRINS 87 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHH--HHHHHCCTTCEEEEEEEEEEEC
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHH--HHHHhCCCCCEEEEEEEEEeee
Confidence 45789999999652 2 122 34555553 3455699999976442 12345899999999999986
Q ss_pred eCC---c----cEEEEEEeee
Q 024592 130 FQD---K----RSLNAYSLRP 143 (265)
Q Consensus 130 f~~---~----~~i~~~~i~~ 143 (265)
|.+ + ..|.+..|.|
T Consensus 88 y~~kdG~kr~~tEVva~~i~P 108 (108)
T 3koj_A 88 LLKPDGNREKQTELTVTRVHH 108 (108)
T ss_dssp --------CCEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEEEC
Confidence 432 2 2456666554
No 162
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.17 E-value=0.53 Score=38.75 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=41.8
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
++.+.+||.+|+. ..+++.+|++.++++...|...|+.|.+.|.|..
T Consensus 19 d~~~~~IL~~L~~-------~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~ 65 (192)
T 1uly_A 19 EDTRRKILKLLRN-------KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEV 65 (192)
T ss_dssp SHHHHHHHHHHTT-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4678889999972 2589999999999999999999999999999965
No 163
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=90.09 E-value=0.48 Score=36.76 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=46.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++.-|-.||.+|... .+.+++..+|++.++++...|...|+.|+..|+|.- .|.
T Consensus 32 gLt~~q~~vL~~L~~~----~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~ 87 (147)
T 4b8x_A 32 GLTFARYEALVLLTFS----KSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNP 87 (147)
T ss_dssp TCCHHHHHHHHHHHTS----GGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHC----CCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecC
Confidence 5777788899888653 134699999999999999999999999999999998 664
No 164
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=90.07 E-value=0.48 Score=37.32 Aligned_cols=51 Identities=12% Similarity=0.288 Sum_probs=43.7
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
++..+..||++|.+. .+.-++.++|.+.+ +++...|-..|+.|.+.|.|-.
T Consensus 15 ~T~qR~~Il~~L~~~----~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 15 VTLPRLKILEVLQQP----ECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp CCHHHHHHHHHHTSG----GGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 567888999999763 11468999999988 5899999999999999999987
No 165
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=90.07 E-value=0.53 Score=40.04 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=44.2
Q ss_pred HHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 204 QMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 204 ~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
-.||++|.+. ..++++.||++.++++.+.+...|..|.+.|.|...++..|..+
T Consensus 11 l~iL~~l~~~-----~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg 64 (249)
T 1mkm_A 11 FEILDFIVKN-----PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPG 64 (249)
T ss_dssp HHHHHHHHHC-----SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred HHHHHHHHhC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcEEEC
Confidence 3578888642 34799999999999999999999999999999987545577654
No 166
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=90.06 E-value=0.57 Score=40.11 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=42.4
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
+||++|.+ .+.++++.||++.++++.+.+...|..|.+.|.|... +..|..+
T Consensus 18 ~iL~~l~~-----~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~-~~~Y~Lg 69 (257)
T 2g7u_A 18 AVLLAFDA-----QRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS-GGRWSLT 69 (257)
T ss_dssp HHHHTCSS-----SCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEC
T ss_pred HHHHHHHh-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-CCEEEEc
Confidence 35666643 2458999999999999999999999999999999774 4677754
No 167
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=90.06 E-value=0.29 Score=36.53 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=48.6
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC----CCHHHHHHHHHHHhhCCeEEe-ecCCce
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN----LPMDKLMEALESLNENSLVYS-IDEFHY 259 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~----~~~~~v~~al~~L~~eG~IYs-iDd~hy 259 (265)
.+++..+..||.+|... .+++..+|++.++ ++...|...|+.|.+.|.|.. -|+-.+
T Consensus 6 ~~lt~~~~~vL~~l~~~------~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~ 67 (123)
T 1okr_A 6 YEISSAEWEVMNIIWMK------KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIF 67 (123)
T ss_dssp CCCCHHHHHHHHHHHHH------SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHhC------CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeE
Confidence 36788899999999752 3799999999997 889999999999999999998 765433
No 168
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=89.97 E-value=0.56 Score=40.04 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=31.4
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.=+ +..+++++++.+...||+||+.|.++|.|+.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 346 7899999999999999999999999999986
No 169
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=89.94 E-value=0.66 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC----CCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN----LPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~----~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
+++..+-.||.+|-.. +.+++..+|++.++ ++...|...|+.|.+.|.|-. -|..
T Consensus 6 ~lt~~e~~vL~~L~~~-----~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r 65 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSR-----TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDR 65 (138)
T ss_dssp GCCHHHHHHHHHHHTC-----SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred cCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 5778899999999762 24799999999997 799999999999999999998 6554
No 170
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=89.82 E-value=0.26 Score=36.36 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=46.5
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC----CCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN----LPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~----~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
.+++..+..||++|.+. .+++..+|++.++ ++...|...|+.|++.|.|-. -|..
T Consensus 31 ~~LT~~e~~VL~~L~~~------~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR 90 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSL------GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGR 90 (99)
T ss_dssp CCCCCSCSHHHHHHHHH------SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETT
T ss_pred CCCCHHHHHHHHHHHhC------CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCC
Confidence 35778888999999753 3799999999996 578999999999999999988 6554
No 171
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=89.78 E-value=0.3 Score=37.70 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+++..+-.||.+| .. .+++..+|++.++++...|...|+.|.+.|.|..
T Consensus 35 ~lt~~q~~iL~~l-~~------~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SI------EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HH------SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHH-Hc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4677888999999 42 4899999999999999999999999999999984
No 172
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=89.74 E-value=0.41 Score=43.59 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+..||++|++. ..++..+|++.++++...|.+.+++|+++|.|..
T Consensus 18 ~~~il~~l~~~------~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLIDQL------GPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHSS------CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 35699999874 3689999999999999999999999999999988
No 173
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=89.57 E-value=0.6 Score=39.70 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.=+ +..+++++++.+...||+||..|.++|.|+.
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 66 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYR 66 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 345 7899999999999999999999999999987
No 174
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=89.51 E-value=0.56 Score=35.09 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=45.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-. -+.. +|..+
T Consensus 18 ~~R~~Il~~L~~-------~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~ 75 (118)
T 3f6o_A 18 PTRRAVLGRLSR-------GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE 75 (118)
T ss_dssp HHHHHHHHHHHT-------CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHh-------CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC
Confidence 577889999873 2579999999999999999999999999999988 5542 44443
No 175
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=89.43 E-value=0.39 Score=37.47 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=35.9
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
.+++..+|++.++++...|+.+|..|.++|.|....+..+..|
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT 95 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLT 95 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEEC
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecCCceEEC
Confidence 3689999999999999999999999999999877433445444
No 176
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=89.40 E-value=0.34 Score=42.14 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
.||++|.+. ..++++.||+++++++.+.+...|..|.+.|.|....+..|...
T Consensus 34 ~IL~~l~~~-----~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG 86 (275)
T 3mq0_A 34 RILDLVAGS-----PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTLRIG 86 (275)
T ss_dssp HHHHHHHHC-----SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEEEC
T ss_pred HHHHHHhhC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEEeh
Confidence 478887653 35899999999999999999999999999999998434678754
No 177
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.29 E-value=0.37 Score=36.78 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... ..+++..+|++.++++...|...|+.|.+.|.|.. .|.
T Consensus 32 ~l~~~~~~iL~~l~~~-----~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRL-----GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp HHHHHHHHHHHHHHHT-----TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHHc-----CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCC
Confidence 4566778899888751 24799999999999999999999999999999988 553
No 178
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=89.28 E-value=0.19 Score=42.42 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCH--HHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeecc
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHR--NVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSAV 263 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~--~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t~ 263 (265)
+++..+..+|.+|.... +.|++. .+|++.++++...|..+|+.|...|+|.. -| ..+..|.
T Consensus 3 ~lt~~~e~~L~~L~~l~----~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~v~LT~ 66 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLE----EEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD-RHLELTE 66 (230)
T ss_dssp TTSSHHHHHHHHHHHHH----HHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SCEEECH
T ss_pred CCCHHHHHHHHHHHHHh----hcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-ccEEECH
Confidence 46778888888876532 237777 99999999999999999999999999988 54 4555553
No 179
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=89.16 E-value=0.69 Score=39.19 Aligned_cols=52 Identities=12% Similarity=0.317 Sum_probs=38.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+.+.|.+.|.... .....=+ +..+++++++.+...||+||..|.++|.|+.
T Consensus 9 ~i~~~l~~~I~~g~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~ 61 (239)
T 3bwg_A 9 QIATEIETYIEEHQ-LQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ 61 (239)
T ss_dssp HHHHHHHHHHHHTT-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCC-CCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 34455555444321 1223346 7899999999999999999999999999986
No 180
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=89.12 E-value=0.69 Score=36.39 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=43.4
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
+++.+..||++|.+. +.-++.++|.+.+ +++...|-..|+.|.+.|.|-.
T Consensus 25 ~T~qR~~IL~~l~~~-----~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 25 NSKQREEVVSVLYRS-----GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp CHHHHHHHHHHHHHC-----SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 457888899999753 3468999999988 5999999999999999999988
No 181
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=89.07 E-value=0.85 Score=40.48 Aligned_cols=55 Identities=7% Similarity=0.134 Sum_probs=44.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceee
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKS 261 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~ 261 (265)
..+.+|+++|++ ..-++.++|+++|++++..|++.|+.|.+.|.+-. .....|..
T Consensus 5 ~r~~~Il~~L~~------~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l 60 (321)
T 1bia_A 5 TVPLKLIALLAN------GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSL 60 (321)
T ss_dssp HHHHHHHHHHTT------SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEEC
T ss_pred hHHHHHHHHHHc------CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEE
Confidence 567789999964 24689999999999999999999999999998854 54445554
No 182
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.01 E-value=0.32 Score=35.45 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEee
Q 024592 220 NGV-HRNVISQQLNLPMDKLMEALESLNENSLVYSI 254 (265)
Q Consensus 220 ~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsi 254 (265)
.-+ ++.+|++.|+++...|+++|..|.++|.|...
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345 89999999999999999999999999999873
No 183
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=88.85 E-value=0.53 Score=33.64 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=32.3
Q ss_pred CCcCHHHHHHhcCCCHHH-HHHHHHHHhhCCeEEe
Q 024592 220 NGVHRNVISQQLNLPMDK-LMEALESLNENSLVYS 253 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~-v~~al~~L~~eG~IYs 253 (265)
.+++..+|++.++++... |...|+.|.+.|.|..
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeec
Confidence 379999999999999999 9999999999999986
No 184
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=88.77 E-value=0.31 Score=37.87 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHh-cCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFL-RRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i-~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+| .. ..+++..+|++.++++...|...|+.|++.|.|.. .|.
T Consensus 44 ~l~~~~~~iL~~L~~~------~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 44 GLSLAKFDAMAQLARN------PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp SCCHHHHHHHHHHHHC------TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCCHHHHHHHHHHHHc------CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 5677888999999 44 24899999999999999999999999999999988 554
No 185
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=88.77 E-value=0.42 Score=36.41 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|.. .|
T Consensus 37 ~l~~~~~~iL~~l~~~------~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 37 NITYPQYLALLLLWEH------ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp CCCHHHHHHHHHHHHH------SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 5777888899999753 2799999999999999999999999999999988 55
No 186
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.64 E-value=0.36 Score=37.59 Aligned_cols=55 Identities=5% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
++++-+-.|+=.|... ......+.+.++|++++++++.+|...|+.|++.|.|--
T Consensus 29 gLs~~E~~lLl~L~~~-~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 29 GLNETELILLLKIKMH-LEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TCCHHHHHHHHHHHHH-HTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCHHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3555555544333321 113356899999999999999999999999999998865
No 187
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=88.63 E-value=4.7 Score=29.67 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=43.2
Q ss_pred eEEEEEEEEEEe---ee--C-CCeEEEEEEc-----CCC------e-EEEEEecccccccccccccCCCCEEEEEEEeee
Q 024592 68 NTITVVGIVCDM---QD--K-EPQFIFLIDD-----GTG------R-IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA 129 (265)
Q Consensus 68 ~~V~iVG~V~~v---~~--~-~t~~~y~LdD-----gTG------~-I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~ 129 (265)
+.|.|+|.+..- +. . .....|+|.= ..| . |.|..|-.-++ ...+..|+.|.|.|+|+.
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae----~~~l~KG~~v~veGrL~~ 83 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE----EWQYRQGDCATVEGFLAQ 83 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH----HSTTCTTCEEEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh----hhccCCCCEEEEEEEEEE
Confidence 677888887652 11 1 1234444431 122 2 77788865442 345999999999999985
Q ss_pred --eCCc-cEEEEEEeeeC
Q 024592 130 --FQDK-RSLNAYSLRPI 144 (265)
Q Consensus 130 --f~~~-~~i~~~~i~~v 144 (265)
|+++ ..+-+..|..+
T Consensus 84 rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 84 KSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp SSSSCCCEEEEEEEEEEC
T ss_pred CccCCccEEEEEEEEEEc
Confidence 6554 22444555444
No 188
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.53 E-value=0.47 Score=43.63 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+..||++|++. ..++..+|++.++++...|.+.+++|+++|.|..
T Consensus 41 ~~~il~~l~~~------~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 41 AGRVYKLIDQK------GPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34699999874 3689999999999999999999999999999976
No 189
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.52 E-value=0.44 Score=38.82 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=38.9
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe-EE
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL-VY 252 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~-IY 252 (265)
-...|+++|++. ...++..+|+++|+++...|+.-|..|.+.|. |.
T Consensus 22 R~~~Il~~L~~~-----~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 22 RLKSIVRILERS-----KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHC-----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHc-----CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 456688888752 23599999999999999999999999999998 63
No 190
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=88.50 E-value=0.75 Score=32.71 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=41.2
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.-.|+.+|.+. ...++.+|.+..+++.+++.-||-.|..|+.|.- -++
T Consensus 10 AG~VW~~L~~~------~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~~ 58 (82)
T 2l02_A 10 AGKVWHALNEA------DGISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (82)
T ss_dssp HHHHHHHHHHC------CSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHhcc------CCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEeeC
Confidence 34688888763 3789999999999999999999999999999987 443
No 191
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=88.44 E-value=0.77 Score=34.24 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=48.2
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC----CCHHHHHHHHHHHhhCCeEEe-ecCCc
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN----LPMDKLMEALESLNENSLVYS-IDEFH 258 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~----~~~~~v~~al~~L~~eG~IYs-iDd~h 258 (265)
.+++..+-.||.+|-+. .+++..+|++.++ ++...|...|+.|.+.|.|.. -|...
T Consensus 6 ~~Lt~~q~~vL~~L~~~------~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~ 66 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDK------KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENI 66 (126)
T ss_dssp CCCCHHHHHHHHHHHHS------SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHhc------CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCe
Confidence 36888999999999763 3799999999996 589999999999999999998 76553
No 192
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=88.42 E-value=1.4 Score=34.56 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=43.4
Q ss_pred EeEEEEEEEEEE---eee---CCCeEEEEEE------c--------CCCeEEEEEecccccccccccccCCCCEEEEEEE
Q 024592 67 VNTITVVGIVCD---MQD---KEPQFIFLID------D--------GTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGH 126 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~---~~t~~~y~Ld------D--------gTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~ 126 (265)
++.|.|+|+|.. ++. ....+.|+|. | .|--|.|..|...+. .....++.|+.|.|.|+
T Consensus 5 mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE--VASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHH--HHHHHCCTTCEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHH--HHHHhcCCCCEEEEEEE
Confidence 688999999955 221 2356778773 1 133489999976432 12234899999999999
Q ss_pred eee--eCC
Q 024592 127 LKA--FQD 132 (265)
Q Consensus 127 i~~--f~~ 132 (265)
|+. |.+
T Consensus 83 L~~~~~~d 90 (145)
T 1qvc_A 83 LRTRKWTD 90 (145)
T ss_dssp EEEEEECS
T ss_pred EEeeEEEC
Confidence 986 543
No 193
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=88.38 E-value=0.84 Score=35.62 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=39.7
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..-.+|-+|... ..+.-++.++|+++++++..-++++|..|...|.|-+
T Consensus 12 yAl~~L~~La~~---~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 12 YGLTLMISLAKK---EGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp HHHHHHHHHHTT---TTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhC---CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 444566666553 2234589999999999999999999999999999988
No 194
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=88.36 E-value=0.67 Score=38.65 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=38.2
Q ss_pred CCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 219 NNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
..+++..+|++.|+++...|..+|+.|.++|.|....+..+..|.
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~ 62 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTD 62 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCCCeEECH
Confidence 458999999999999999999999999999999874445565554
No 195
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=88.25 E-value=0.34 Score=34.78 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=43.8
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeecc
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSAV 263 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t~ 263 (265)
++.-+-.||..|-... .....++..+|++.++++...|...|+.|...|.|-. -|-- .+..|.
T Consensus 10 l~~~~~~iL~~l~~~~--~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 10 FKEKALEILMTIYYES--LGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTD 75 (95)
T ss_dssp SCHHHHHHHHHHHHHH--HTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CchhHHHHHHHHHHcc--CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEECh
Confidence 4555566666553321 1122399999999999999999999999999999944 4432 344443
No 196
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=88.24 E-value=1.1 Score=37.46 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 218 NNNGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 218 ~~~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
...=+ +..+++++|+.+...||+||..|..+|.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~ 63 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI 63 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 34457 6899999999999999999999999999986
No 197
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=88.23 E-value=0.86 Score=35.58 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=44.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC----ceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF----HYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~----hyk~t~ 263 (265)
.....||..|.. ..+++.+|++.++++...+...|+.|.+.|.|-. .+.. .|..|.
T Consensus 24 ~w~l~IL~~L~~-------g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~ 84 (146)
T 2f2e_A 24 GWSMLIVRDAFE-------GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTD 84 (146)
T ss_dssp SSHHHHHHHHHT-------TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECH
T ss_pred chHHHHHHHHHh-------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECc
Confidence 345567777742 2579999999999999999999999999999998 6643 565554
No 198
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=88.08 E-value=0.76 Score=36.41 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.9
Q ss_pred CCCeEECCeEEeEEEEEEEEEEeeeC----CCeEEEE--EEcCC---C-----eEEEEEecccccccccccccCCCCEEE
Q 024592 57 ESSASIDGADVNTITVVGIVCDMQDK----EPQFIFL--IDDGT---G-----RIECSRWAHEQMEFNEVNQISKGMYVR 122 (265)
Q Consensus 57 ~~~f~i~g~~v~~V~iVG~V~~v~~~----~t~~~y~--LdDgT---G-----~I~~~~w~~~~~~~~~~~~~~~g~yVr 122 (265)
+..+...-+.++.|.|+|+|.+...+ ..-..|+ ++... | -+.++.|- ......-...++.|+.|.
T Consensus 34 ~~~~~~h~r~vN~VvLmGRvtdpq~ry~~~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfG-g~lAE~i~~ylkkG~rVl 112 (148)
T 3stb_C 34 EGEVAAHWRCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFD-SDYSSRVKEQLRDGEWFL 112 (148)
T ss_dssp ----CCCCSCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCCTTSCSEEEEEEEECS-HHHHHHHHHHCCTTCEEE
T ss_pred chhhhhhheecceEEEEEEecCccccccCCCcEEEEEEEEecCCCCCCCCccceEEEEEEC-ChHHHHHHHHhcCCCEEE
Confidence 34566677889999999999887654 1234444 33221 2 27788885 111112245689999999
Q ss_pred EEEEeeee
Q 024592 123 VYGHLKAF 130 (265)
Q Consensus 123 V~G~i~~f 130 (265)
|.|+|+.-
T Consensus 113 VeGRLrmn 120 (148)
T 3stb_C 113 VTGRLRMV 120 (148)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 99999974
No 199
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=88.07 E-value=0.79 Score=35.63 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd 256 (265)
+++.-|-.||.+|..... ....+++..+|++.++++...|...|+.|+..|.|-..|+
T Consensus 30 gLt~~q~~vL~~l~~~~~-~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~ 87 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEG-SAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAG 87 (148)
T ss_dssp TCCHHHHHHHHHHHC----------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC----
T ss_pred CCCHHHHHHHHHHHHhcC-CCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCC
Confidence 577788889998876421 2234699999999999999999999999999999933443
No 200
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=87.97 E-value=0.68 Score=39.84 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
.||++|.. ...++++.||++.++++.+.+...|..|.+.|.|... +..|...
T Consensus 25 ~iL~~l~~-----~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~-~~~Y~Lg 76 (265)
T 2ia2_A 25 AVIRCFDH-----RNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD-GSAFWLT 76 (265)
T ss_dssp HHHHTCCS-----SCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES-SSEEEEC
T ss_pred HHHHHHHh-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCEEEEc
Confidence 36666653 2458999999999999999999999999999999773 4677653
No 201
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=87.92 E-value=0.61 Score=34.60 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=41.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
..+-.||..|.. .+++..+|++.+ +++...|...|+.|.+.|.|-. .|.
T Consensus 22 ~~~~~IL~~L~~-------~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 22 KWKLSLMDELFQ-------GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp TTHHHHHHHHHH-------SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred ccHHHHHHHHHh-------CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 455678877752 268999999999 9999999999999999999998 654
No 202
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=87.88 E-value=0.89 Score=35.27 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=42.8
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
++..+..||++|.+. ..-++.++|.+.+ +++...|-..|+.|.+.|.|-.
T Consensus 12 ~T~qR~~Il~~L~~~-----~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 12 ATRQRAAVSAALQEV-----EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHTTC-----SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 356778899999863 2368999999988 4899999999999999999977
No 203
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=87.87 E-value=0.46 Score=40.27 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=41.3
Q ss_pred EEEEEEEEEEeee---------CCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEE-Eeee
Q 024592 69 TITVVGIVCDMQD---------KEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYG-HLKA 129 (265)
Q Consensus 69 ~V~iVG~V~~v~~---------~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G-~i~~ 129 (265)
.++|.|+|.++.+ ....+.+.|-|.+|.|.|..|.+... .-.+.|++|+.+.+.+ +++.
T Consensus 20 ~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~--~~~~~l~~G~vy~i~~~~v~~ 88 (246)
T 1jmc_A 20 KWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVD--KFFPLIEVNKVYYFSKGTLKI 88 (246)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHH--HHGGGCCTTCEEEEECCEEEE
T ss_pred ceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHH--HhhhhcccCCEEEECCCEEEE
Confidence 4567777776521 12357889999999999999976432 2245689999888876 3444
No 204
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=87.79 E-value=6.3 Score=28.63 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=47.8
Q ss_pred eEEEEEEEEEE--eeeC--CCeEEEEEEcC---CCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEE
Q 024592 68 NTITVVGIVCD--MQDK--EPQFIFLIDDG---TGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYS 140 (265)
Q Consensus 68 ~~V~iVG~V~~--v~~~--~t~~~y~LdDg---TG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~ 140 (265)
..++|-|.|.. +... +..+.|.|.|+ ...|.|.+--- .++.|++|.-|-+.|++..- .-.+.|..
T Consensus 9 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~Gi------lPDlFrEGqgVV~~G~l~~~--~g~F~A~e 80 (94)
T 2kct_A 9 HTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGA------VPDTFKPGVEVIIEGGLAPG--EDTFKART 80 (94)
T ss_dssp CCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESC------CCTTCCTTCEEEEEEEECTT--CSEEEEEE
T ss_pred CeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCC------CCccccCCCeEEEEEEEeCC--CCEEEEeE
Confidence 46888899864 4443 57899999998 67788885432 35779999999999998531 23456655
Q ss_pred e
Q 024592 141 L 141 (265)
Q Consensus 141 i 141 (265)
|
T Consensus 81 v 81 (94)
T 2kct_A 81 L 81 (94)
T ss_dssp E
T ss_pred E
Confidence 4
No 205
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=87.78 E-value=1.8 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=41.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
..+..||.+|.+ .++++.+|++.++++...|...|..|.+.|.|-. -+.
T Consensus 46 ~~rl~IL~~L~~-------~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~g 95 (122)
T 1r1t_A 46 PNRLRLLSLLAR-------SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG 95 (122)
T ss_dssp HHHHHHHHHHTT-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456678888853 2579999999999999999999999999999987 554
No 206
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=87.76 E-value=5.1 Score=30.20 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=34.3
Q ss_pred EEEEEecccccccccccccCCCCEEEEEEEeeee--CCc-cEEEEEEeeeCC
Q 024592 97 IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAF--QDK-RSLNAYSLRPII 145 (265)
Q Consensus 97 I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f--~~~-~~i~~~~i~~v~ 145 (265)
|.|..|-..++ ....+..|+.|.|.|+|+.- +++ ..|.|..|..+.
T Consensus 49 i~vv~~Gk~AE---~~~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~ 97 (115)
T 3fhw_A 49 ISAVALGDLAL---LLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIA 97 (115)
T ss_dssp EEEEEETHHHH---HHTTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECC
T ss_pred EEEEEEhHHHH---hhhccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcC
Confidence 88899976442 23568999999999999973 333 468888888775
No 207
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=87.67 E-value=0.22 Score=39.99 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|...+ ...|++..+|++.++++...|...|+.|...|.|.. .|.
T Consensus 66 glt~~~~~iL~~L~~~~---~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 122 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSA---PPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 122 (181)
T ss_dssp TCCHHHHHHHHHHHHHC---CSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC--
T ss_pred CCCHHHHHHHHHHHHcC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCC
Confidence 57788899999997642 224799999999999999999999999999999988 553
No 208
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=87.60 E-value=1.4 Score=29.41 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..+++.+..|+.++. +|.+..+|++.++++...|+..+..+.
T Consensus 10 ~~L~~~e~~il~~~~--------~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKREREVFELLV--------QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHHHHHHHHT--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458889999998872 378999999999999999988887654
No 209
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=87.51 E-value=0.78 Score=41.21 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=42.2
Q ss_pred CChhHHHHHH-----HhcCcCCCCCCCCcCHHHHHHhc--CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLD-----FLRRPEFLANNNGVHRNVISQQL--NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~-----~i~~~~~~~~~~Gv~~~~I~~~l--~~~~~~v~~al~~L~~eG~IYs 253 (265)
++.-++.||+ ++++ ..-|...+|++++ +.++..||..|..|.++|.|..
T Consensus 15 l~eR~~~IL~~i~~~yl~~------~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r 70 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIEN------KKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQ 70 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHH------CSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4577888999 6654 3468999999999 8999999999999999999975
No 210
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=87.49 E-value=1.4 Score=34.03 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=32.8
Q ss_pred eEEEEEecccccccccccccCCCCEEEEEEEeee--eCC---c----cEEEEEEeeeCCC
Q 024592 96 RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA--FQD---K----RSLNAYSLRPIID 146 (265)
Q Consensus 96 ~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~--f~~---~----~~i~~~~i~~v~d 146 (265)
-|.|..|...+. .....++.|+.|.|.|+|+. |.+ + ..|.+..|..+..
T Consensus 50 ~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 50 FIDARLFGRTAE--IANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEEcHHHH--HHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 488888865332 12234899999999999986 532 2 2366777766654
No 211
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=87.41 E-value=1.2 Score=41.41 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCeEEEEEecccccc-------------ccc-------ccccCCCC--EEEEEEEeeeeCCc--cEEEEEE
Q 024592 85 QFIFLIDDGTGRIECSRWAHEQME-------------FNE-------VNQISKGM--YVRVYGHLKAFQDK--RSLNAYS 140 (265)
Q Consensus 85 ~~~y~LdDgTG~I~~~~w~~~~~~-------------~~~-------~~~~~~g~--yVrV~G~i~~f~~~--~~i~~~~ 140 (265)
.+.+.|.|+||.+.|..|.+.+.. ..+ ... ..+. .+||..+...|++. ...++..
T Consensus 345 ~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~d~~~~~~~~~~-~~~k~~~f~~~~k~~~y~~~~r~~~~v~~ 423 (444)
T 4gop_C 345 ILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHR-AANRMYMFNCRAKMDTFNDTARVRYTISR 423 (444)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTTCHHHHHHHHHT-TSSCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhcChHHHHHHHHH-hhCcEEEEEEEEEeeeeCCeeEEEEEEEE
Confidence 467899999999999999753320 000 011 2233 45666666689887 5577788
Q ss_pred eeeCCChhHHHHHHHHHHHHH
Q 024592 141 LRPIIDFNEITSHFVECIYVQ 161 (265)
Q Consensus 141 i~~v~d~Nei~~H~Levi~~~ 161 (265)
+.|+ |+.+...++|+.|..+
T Consensus 424 ~~~~-d~~~~~~~l~~~i~~~ 443 (444)
T 4gop_C 424 AAPV-DFAKAGMELVDAIRAY 443 (444)
T ss_dssp EEEC-CHHHHHHHHHHHHHHH
T ss_pred eeeC-CHHHHHHHHHHHHHhh
Confidence 8888 6888899999988654
No 212
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=87.27 E-value=0.22 Score=38.13 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=38.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEee
Q 024592 201 SIDQMVLDFLRRPEFLANNNGV-HRNVISQQLNLPMDKLMEALESLNENSLVYSI 254 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsi 254 (265)
.+...|.+.|.... .....=+ +..+|++.|+.+...|++|+..|.++|.|+..
T Consensus 15 ~i~~~l~~~I~~g~-~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 15 QIADRICDDILLGQ-YEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp HHHHHHHHHHHTTS-SCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 45555555555431 1223345 78899999999999999999999999999873
No 213
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=86.76 E-value=0.82 Score=36.09 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=45.9
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeec
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF--HYKSA 262 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t 262 (265)
.+.+..||.+|.. ..+++.+|++.|+++...|...|..|.+.|.|-. -+.. .|..|
T Consensus 57 ~p~R~~IL~~L~~-------~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt 115 (151)
T 3f6v_A 57 EPTRRRLVQLLTS-------GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLD 115 (151)
T ss_dssp SHHHHHHHHHGGG-------CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEC
Confidence 3678889999863 2589999999999999999999999999999987 5543 44444
No 214
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=86.73 E-value=0.69 Score=38.22 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=46.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|.. .|.
T Consensus 45 gLt~~q~~iL~~L~~~------~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 45 DLNINEHHILWIAYQL------NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp TCCHHHHHHHHHHHHH------TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred CCCHHHHHHHHHHHHC------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 5778888999999753 3799999999999999999999999999999998 654
No 215
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=86.72 E-value=0.81 Score=27.63 Aligned_cols=40 Identities=8% Similarity=-0.092 Sum_probs=31.1
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENS 249 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG 249 (265)
.+..|+.++. .|++..+|++.|+++...|...+......|
T Consensus 10 ~~~~i~~~~~--------~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 10 ERAQLDVMKL--------LNVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 3345665552 388999999999999999999988766655
No 216
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=86.61 E-value=2.5 Score=31.62 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=48.6
Q ss_pred EeEEEEEEEEEE---eeeC---CCeEEEEEE--c----CCC-----eEEEEEecccccccccccccCCCCEEEEEEEeee
Q 024592 67 VNTITVVGIVCD---MQDK---EPQFIFLID--D----GTG-----RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA 129 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~~---~t~~~y~Ld--D----gTG-----~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~ 129 (265)
++.|.|+|.|.. +... ...+.|.|. . ..| -|.|..|...+. .....++.|+.|.|.|+|+.
T Consensus 5 mN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 5 FNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAE--NTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEE
T ss_pred EeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHH--HHHHhCCCCCEEEEEEEEEe
Confidence 567888888854 2221 235566652 1 122 388999976432 12234899999999999985
Q ss_pred --eC---Cc----cEEEEEEeeeCCCh
Q 024592 130 --FQ---DK----RSLNAYSLRPIIDF 147 (265)
Q Consensus 130 --f~---~~----~~i~~~~i~~v~d~ 147 (265)
|. |+ ..|.+..|..+...
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC--
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 54 22 35777777777653
No 217
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=86.60 E-value=1.1 Score=35.60 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=41.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.-+++||++|+ .+ .+++.+|++.|+++=.+++-+|-.|..||.|.+
T Consensus 11 erk~~ILE~Lk-~G------~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~ 56 (165)
T 2vxz_A 11 VRLRDILALLA-DG------CKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTR 56 (165)
T ss_dssp HHHHHHHHHHT-TC------CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHH-hC------CccHHHHHHHhCCcHHHHHHHHHHHHhcCceEE
Confidence 46788999998 32 579999999999999999999999999999987
No 218
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=86.59 E-value=2 Score=30.15 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC-CHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNL-PMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~-~~~~v~~al~~L~~eG~IYs 253 (265)
..-.|+.+|.+. ...++.+|.+..++ +.+++.-||-.|..|+.|.-
T Consensus 11 nAG~VW~~L~~~------~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~ 57 (77)
T 2l01_A 11 LAGQIWEALNGT------EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (77)
T ss_dssp HHHHHHHHHTTS------SCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhcC------CCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEE
Confidence 345689999763 37899999999999 99999999999999999987
No 219
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=86.56 E-value=0.7 Score=36.13 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=42.6
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
++..+..||++|.+. + -++.++|.+.+ +++...|..+|+.|.+.|.|-.
T Consensus 17 ~T~qR~~Il~~l~~~-----~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 17 LTPQRQLVLEAVDTL-----E-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp CCHHHHHHHHHHHHH-----S-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHhc-----C-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 567888899999763 3 68999999988 4899999999999999999977
No 220
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=86.50 E-value=1.4 Score=31.53 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=36.5
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNE 247 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~ 247 (265)
..|+.-+..||.++. +|.+..+|++.|++++..|+.-+..+..
T Consensus 28 ~~Lt~rE~~Vl~l~~--------~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--------KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp -CCCHHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 568899999999885 3899999999999999999988877653
No 221
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=86.44 E-value=5.8 Score=32.76 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=37.8
Q ss_pred EEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEE-eeeeCCccEEEE
Q 024592 76 VCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGH-LKAFQDKRSLNA 138 (265)
Q Consensus 76 V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~-i~~f~~~~~i~~ 138 (265)
|........++.|.|.|.||.++|..+-.-. .-..++||-+|.+.= |+...++++|..
T Consensus 131 v~KK~v~~~~~~YeI~DnTG~MeVvv~G~~~-----~i~CEeGDKLrL~cFeL~~~~~~~qL~s 189 (208)
T 3rn5_A 131 VQKVTEKKKNILFDLSDNTGKMEVLGVRNED-----TMKCKEGDKVRLTFFTLSKNGEKLQLTS 189 (208)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEECSTG-----GGSCCTTCEEEEEEEEEEECSSSEEEEC
T ss_pred EEEEEeccceEEEEEecCCCcEEEEEeccCc-----ccccCCCCeeEEEEEEEeccCCeeeEEE
Confidence 3344566789999999999999999764321 234577886665542 444455555443
No 222
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=86.43 E-value=2.4 Score=40.10 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=50.4
Q ss_pred eEEEEEEEEEEeee-----C-CCeEEEEEEcCC-C-------eE-----EEEEeccccccccccccc-CCCCEEEEE-EE
Q 024592 68 NTITVVGIVCDMQD-----K-EPQFIFLIDDGT-G-------RI-----ECSRWAHEQMEFNEVNQI-SKGMYVRVY-GH 126 (265)
Q Consensus 68 ~~V~iVG~V~~v~~-----~-~t~~~y~LdDgT-G-------~I-----~~~~w~~~~~~~~~~~~~-~~g~yVrV~-G~ 126 (265)
..|.|+|+|+++.. . .-.++|+|-|.+ . -| .|.+|.... +..+.+ ..||.|++. -+
T Consensus 50 ~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~---e~LP~V~~~GDII~Lhrvk 126 (495)
T 1jb7_A 50 QPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRF---EDLPIIHRAGDIIRVHRAT 126 (495)
T ss_dssp SCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSG---GGSCCCCEETCEEEEEEEE
T ss_pred CeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCCh---HHCCCCCCCCCEEEEEEEE
Confidence 35899999998742 1 236899999955 2 16 999997644 246777 699999994 57
Q ss_pred eeeeCCccEEEE
Q 024592 127 LKAFQDKRSLNA 138 (265)
Q Consensus 127 i~~f~~~~~i~~ 138 (265)
|+.|+++.++.+
T Consensus 127 Iq~~ng~~~~v~ 138 (495)
T 1jb7_A 127 LRLYNGQRQFNA 138 (495)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCcEEEEe
Confidence 999999987644
No 223
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=86.14 E-value=1.3 Score=32.38 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=43.5
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-CCHHHHHHHHHHHhhCCeEEe-ecCC-----ceeecc
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLN-LPMDKLMEALESLNENSLVYS-IDEF-----HYKSAV 263 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-~~~~~v~~al~~L~~eG~IYs-iDd~-----hyk~t~ 263 (265)
....||..|.. .++++.+|++.++ ++...+...|..|.+.|.|-. .|.. .|..|.
T Consensus 26 ~~~~IL~~L~~-------~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~ 87 (107)
T 2fsw_A 26 WTLLIIFQINR-------RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTP 87 (107)
T ss_dssp SHHHHHHHHTT-------SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH
T ss_pred cHHHHHHHHHh-------CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECc
Confidence 44567777742 3689999999995 999999999999999999988 6643 465554
No 224
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=86.11 E-value=0.72 Score=40.70 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE-eec
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVY-SID 255 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY-siD 255 (265)
.++++++|+++|++++..||.-|++|.++|.|- .+.
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEec
Confidence 489999999999999999999999999999997 354
No 225
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=86.11 E-value=0.25 Score=41.66 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCH--HHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHR--NVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~--~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
+++..+..+|++|-... +.|++. .+|+++++++...|..+|+.|..+|.|.-..+..+..|.
T Consensus 3 ~lt~~~e~yL~~i~~l~----~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~ 66 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELE----EEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTP 66 (226)
T ss_dssp CHHHHHHHHHHHHHHHH----HHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECH
T ss_pred CCCHHHHHHHHHHHHHh----hcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCCeEECH
Confidence 35667777888775431 236665 999999999999999999999999999873334555554
No 226
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=86.03 E-value=1.5 Score=32.36 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.9
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
..+..||..|.+ .++++.+|++.++++...|...|..|.+.|.|.. -+..
T Consensus 32 ~~~~~il~~L~~-------~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r 82 (119)
T 2lkp_A 32 PSRLMILTQLRN-------GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGR 82 (119)
T ss_dssp HHHHHHHHHHHH-------CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHH-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 466778887753 2579999999999999999999999999999977 5544
No 227
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=85.83 E-value=1.6 Score=30.38 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=35.2
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++.+++|+.++. +|.+..+|++.|++++..|+..+..+.
T Consensus 20 ~~Lt~~e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 20 NQLTPRERDILKLIA--------QGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GGSCHHHHHHHHHHT--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458889999998862 389999999999999999988777654
No 228
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=85.81 E-value=7.5 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=25.0
Q ss_pred EEEEEecccccccccccccCCCCEEEEEEEeeeeC
Q 024592 97 IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQ 131 (265)
Q Consensus 97 I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~ 131 (265)
|.|..|-..++ ....-+..|+.|.|.|+|+.-.
T Consensus 67 i~vv~wGk~AE--~~~~yl~KGs~V~VeGrL~tr~ 99 (134)
T 1v1q_A 67 MPVIVSGHENQ--AITHSITVGSRITVQGFISCHK 99 (134)
T ss_dssp EEEEEESTGGG--GGGTTCCTTCEEEEEEEEEEEC
T ss_pred EEEEEEhHHHH--HHHHhcCCCCEEEEEEEEEEEE
Confidence 88999976442 1234589999999999999863
No 229
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=85.71 E-value=1.9 Score=31.82 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=23.3
Q ss_pred EEEEEecccccccccccccCCCCEEEEEEEeee--eCCc
Q 024592 97 IECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA--FQDK 133 (265)
Q Consensus 97 I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~--f~~~ 133 (265)
|.|..|-.-++ ....+..|+.|.|.|+|+. ++++
T Consensus 50 i~vv~wGk~AE---~~~~~~kGs~V~VeGrL~trs~~s~ 85 (101)
T 3en2_A 50 IEALGAGKMAS---VLDRIAPGTVLECVGFLARKHRSSK 85 (101)
T ss_dssp EEEEEETHHHH---HHTTSCTTCEEEEEEEEEECC----
T ss_pred EEEEEEhHHHH---HHhhcCCCCEEEEEEEEEeCcCCCC
Confidence 78889975432 2445889999999999985 4444
No 230
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=85.58 E-value=0.62 Score=32.32 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=43.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
.+-+...++|+.. .=+.+++++..|++..+++.+.|+.|.++|.|-= +||.
T Consensus 7 ~ll~~Fi~yIk~~------Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDR 58 (72)
T 1wi9_A 7 GFLTEFINYIKKS------KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDR 58 (72)
T ss_dssp CHHHHHHHHHHHC------SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTT
T ss_pred HHHHHHHHHHHHc------CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3446677888874 3579999999999999999999999999999988 8874
No 231
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=85.51 E-value=3.7 Score=34.02 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=44.5
Q ss_pred EeEEEEEEEEEE---eeeC---CCeEEEEEEc---------------CCCeEEEEEecccccccccccccCCCCEEEEEE
Q 024592 67 VNTITVVGIVCD---MQDK---EPQFIFLIDD---------------GTGRIECSRWAHEQMEFNEVNQISKGMYVRVYG 125 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~~---~t~~~y~LdD---------------gTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G 125 (265)
++.|.|+|+|.. ++.. ...+.|+|-= .|--|.|..|...++ .....|+.|+.|.|.|
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE--~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAE--NVAESLQRGMRVIVQG 81 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHH--HHHHHCCTTCEEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHH--HHHHhcCCCCEEEEEE
Confidence 467888888854 2221 2345555531 233488999976432 1234589999999999
Q ss_pred Eeee--eCCc-------cEEEEEEeee
Q 024592 126 HLKA--FQDK-------RSLNAYSLRP 143 (265)
Q Consensus 126 ~i~~--f~~~-------~~i~~~~i~~ 143 (265)
+|+. |.++ ..|.+..|.+
T Consensus 82 rL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 82 RLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 9986 4322 3455555554
No 232
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=85.49 E-value=3.5 Score=36.35 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=50.3
Q ss_pred EeEEEEEEEEEE---eee---CCCeEEEEEE------cCCC-------eEEEEEecccccccccccccCCCCEEEEEEEe
Q 024592 67 VNTITVVGIVCD---MQD---KEPQFIFLID------DGTG-------RIECSRWAHEQMEFNEVNQISKGMYVRVYGHL 127 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~---~~t~~~y~Ld------DgTG-------~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i 127 (265)
++.|.|+|.|.. ++. ....+.|.|. |..| -|.|..|...+. .... ++.|+.|.|.|+|
T Consensus 129 mN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae--~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 129 MNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAE--NMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp EEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH--HHTT-CCTTCEEEEEEEE
T ss_pred eeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHH--HHHh-cCCCCEEEEEEEE
Confidence 688999999965 222 1245666663 2223 488889975432 1234 9999999999999
Q ss_pred ee--eCCc-------cEEEEEEeeeCCC
Q 024592 128 KA--FQDK-------RSLNAYSLRPIID 146 (265)
Q Consensus 128 ~~--f~~~-------~~i~~~~i~~v~d 146 (265)
+. |.++ ..|.+..|..+..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 86 5432 3577777777654
No 233
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=85.44 E-value=2.8 Score=30.64 Aligned_cols=61 Identities=21% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCC
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEF 257 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~ 257 (265)
.+++..+=.||..|.+......+..++..+|++++.++...+...|..|...|+|=. .++|
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D 73 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEAD 73 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTT
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCC
Confidence 457778888888776542212334589999999999999999999999999999988 6644
No 234
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=85.26 E-value=1.4 Score=35.21 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..-.+|-+|... ..+.-++.++|++++++++.-++++|..|...|.|.+
T Consensus 28 yAlr~L~~LA~~---~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s 76 (159)
T 3lwf_A 28 YGLTITLELAKR---IGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKS 76 (159)
T ss_dssp HHHHHHHHHHHT---TTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhc---CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE
Confidence 334455555432 1233589999999999999999999999999999998
No 235
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=85.12 E-value=1.6 Score=35.18 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=40.0
Q ss_pred EeEEEEEEEEEE---eeeC---CCeEEEEEEc---------------CCCeEEEEEecccccccccccccCCCCEEEEEE
Q 024592 67 VNTITVVGIVCD---MQDK---EPQFIFLIDD---------------GTGRIECSRWAHEQMEFNEVNQISKGMYVRVYG 125 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~~---~t~~~y~LdD---------------gTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G 125 (265)
++.|.|+|.|.. ++.. ...+.|+|.= .|--|.|..|...+. .....|+.|+.|.|.|
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAE--NVAESLTRGARVIVTG 81 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHH--HHHHHCCTTCEEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHH--HHHHhCCCCCEEEEEE
Confidence 467888998854 2211 2355666641 133489999975432 1234689999999999
Q ss_pred Eeee
Q 024592 126 HLKA 129 (265)
Q Consensus 126 ~i~~ 129 (265)
+|+.
T Consensus 82 rL~~ 85 (168)
T 3afp_A 82 RLKQ 85 (168)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 236
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=85.07 E-value=3 Score=32.05 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=45.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEEe-ecCC-----ceeeccC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVYS-IDEF-----HYKSAVN 264 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IYs-iDd~-----hyk~t~~ 264 (265)
.....||..|.. ..+.+.+|++.+ +++...+...|..|.++|.|-- .+.+ .|..|.-
T Consensus 26 kW~l~IL~~L~~-------g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~ 89 (131)
T 4a5n_A 26 KWKGILFYHMID-------GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEF 89 (131)
T ss_dssp SSHHHHHHHHTT-------SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred cCHHHHHHHHhc-------CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHh
Confidence 355667777642 257999999999 9999999999999999999998 6653 5666654
No 237
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=85.07 E-value=1.9 Score=34.38 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=42.5
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-------CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-------NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-------~~~~~~v~~al~~L~~eG~IYs 253 (265)
++..+..||++|.+. +.-++.++|.+.+ +++...|-.+|+.|.+.|.|-.
T Consensus 31 ~T~qR~~IL~~L~~~-----~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 31 YTKQREVLLKTLYHS-----DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp CCHHHHHHHHHHHSC-----CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 467888899999863 3468999998766 3889999999999999999977
No 238
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=84.71 E-value=1.5 Score=37.65 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=42.5
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCcee
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYK 260 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk 260 (265)
+...|++.+++.+. .--.+.+|+..+++++.++++.|..|..+|.|..++++.|-
T Consensus 142 ~~~~i~~~~~~~g~----~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~ 196 (258)
T 1lva_A 142 LLKDLEDKYRVSRW----QPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 196 (258)
T ss_dssp HHHHHHHHHHHHTT----SCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred HHHHHHHHHHHCCC----CCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 44556666654321 12378999999999999999999999999999997676664
No 239
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=84.65 E-value=0.1 Score=41.56 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=42.4
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+..+...|++.|+.. .-++..+|+++++++...|+++|..|.++|.|..
T Consensus 11 ~d~l~~~Il~~l~~~------~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQKD------GRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHHC------SSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHhC------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 567899999987642 3568999999999999999999999999999963
No 240
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=84.37 E-value=1.6 Score=34.66 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=40.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-CCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLN-LPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-~~~~~v~~al~~L~~eG~IYs 253 (265)
.-+..||..|...+ ..-.++++|++.+. ++...|...|+.|.+.|.|-.
T Consensus 29 ~tR~~IL~~Ll~~p----~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~ 78 (151)
T 3u1d_A 29 ETRLDVLHQILAQP----DGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEK 78 (151)
T ss_dssp HHHHHHHHHHHHST----TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHcCC----CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45667888876531 22379999999997 999999999999999999986
No 241
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=84.23 E-value=0.87 Score=45.52 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=47.3
Q ss_pred eEEEEEEEEEEeee----CCCeEEEEEEcCCCeEEEEEecccccccccccccCC--CCEEEEEEEeeee--CCccEEE
Q 024592 68 NTITVVGIVCDMQD----KEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISK--GMYVRVYGHLKAF--QDKRSLN 137 (265)
Q Consensus 68 ~~V~iVG~V~~v~~----~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~--g~yVrV~G~i~~f--~~~~~i~ 137 (265)
..|+|.|.|.+... ....+...+.|+||.|.+.+|.. .. ....++. |..+.|+|+++.+ .+..++.
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~-~~---~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~ 239 (780)
T 1gm5_A 166 EKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQ-DY---LQTYLKQLTGKEVFVTGTVKSNAYTGQYEIH 239 (780)
T ss_dssp CCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSC-CT---THHHHHTTCSSCEEEEEEECSCCTTSSCCEE
T ss_pred CEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECc-HH---HHhhCccCCCCEEEEEEEEEEccCCCcEEEE
Confidence 37889999977632 23467788999999999887752 11 2345678 9999999999985 4544443
No 242
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=84.02 E-value=1.6 Score=36.82 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=39.3
Q ss_pred hhHHHHHHHhcCc---CCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRP---EFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~---~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+...|++.|++. +......=++..+|+++|+++..-||+||..|..+|.|..
T Consensus 28 ~~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~ 83 (239)
T 2hs5_A 28 SRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH 83 (239)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3455555555421 1123344579999999999999999999999999999976
No 243
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=83.96 E-value=4 Score=32.30 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=45.9
Q ss_pred EeEEEEEEEEEE---eee---CCCeEEEEEE--c-----C------CCeEEEEEecccccccccccccCCCCEEEEEEEe
Q 024592 67 VNTITVVGIVCD---MQD---KEPQFIFLID--D-----G------TGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHL 127 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~---~~t~~~y~Ld--D-----g------TG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i 127 (265)
++.|.|+|+|.. ++. ....+.|+|. . . |--|.|..|...+. .....++.|+.|.|.|+|
T Consensus 16 ~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~VeGrL 93 (153)
T 1z9f_A 16 FNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAE--FARTYLTKGRLVLVEGEM 93 (153)
T ss_dssp CCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHH--HHHhhCCCCCEEEEEEEE
Confidence 567888888854 221 1234555553 1 1 23488889965332 123458999999999999
Q ss_pred ee--eC---Cc----cEEEEEEeeeCCC
Q 024592 128 KA--FQ---DK----RSLNAYSLRPIID 146 (265)
Q Consensus 128 ~~--f~---~~----~~i~~~~i~~v~d 146 (265)
+. |. |+ ..|.+..|..+..
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~ 121 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDR 121 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC-
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccC
Confidence 86 43 22 2577777776654
No 244
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=83.60 E-value=2.4 Score=31.36 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=44.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEEe-ec-CCceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVYS-ID-EFHYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IYs-iD-d~hyk~t~ 263 (265)
.....||..|... +.-+++.+|++.+ +++...+...|..|.+.|.|-. .+ .-.|..|.
T Consensus 27 ~wrl~IL~~L~~g-----~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~ 87 (111)
T 3df8_A 27 KYTMLIISVLGNG-----STRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTE 87 (111)
T ss_dssp TTHHHHHHHHTSS-----SSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECH
T ss_pred ccHHHHHHHHhcC-----CCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECc
Confidence 4566788888631 2225599999999 8999999999999999999988 55 22455443
No 245
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.60 E-value=1.6 Score=37.35 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.+++.-|-.||.+|...+ +.+++..+|++.++++...|-.+|+.|...|.|.- -|+
T Consensus 154 ~gLt~~q~~vL~~L~~~~----~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 154 LTLSFVEFTILAIITSQN----KNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp CSSCHHHHHHHHHHHTTT----TCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CCCCHHHHHHHHHHHhCC----CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 468888999999997631 23699999999999999999999999999999998 654
No 246
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=83.02 E-value=2.4 Score=30.34 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.6
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++.++.|+.++ . +|.+..+|++.|++++..|+..+..+.
T Consensus 26 ~~Lt~~e~~vl~l~-~-------~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 26 SGLTDQERTLLGLL-S-------EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp -CCCHHHHHHHHHH-H-------TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH-H-------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46888999999887 2 389999999999999999888776554
No 247
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=82.96 E-value=0.86 Score=41.14 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=38.9
Q ss_pred HHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 204 QMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 204 ~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..||++|+ .+ .++..+|++.++++...|.+.+++|+++|.|..
T Consensus 23 ~~il~~l~-~~------~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 23 SRILKRIM-KS------PVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp CCSHHHHH-HS------CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHH-cC------CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 34888888 62 689999999999999999999999999999987
No 248
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=82.95 E-value=1.4 Score=34.43 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=35.2
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeec
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDEFHYKSA 262 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t 262 (265)
.-++.++|++++++++.-+++++..|...|.|.+ --.--|..+
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~ 72 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLL 72 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEES
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEeC
Confidence 3589999999999999999999999999999998 333345544
No 249
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=82.77 E-value=0.95 Score=37.25 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=37.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~ 250 (265)
.=|+.|++.|++. .-++++++++.|+.+++.||.-|.+|...+.
T Consensus 12 eR~~~i~~~l~~~------~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 12 KRREAIRQQIDSN------PFITDHELSDLFQVSIQTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHC------CCEeHHHHHHHHCCCHHHHHHHHHHhcCcch
Confidence 3567799999874 3589999999999999999999999988764
No 250
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=82.57 E-value=1.8 Score=33.10 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=43.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhhCCeEEe-ecCC-----ceeecc
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNENSLVYS-IDEF-----HYKSAV 263 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~eG~IYs-iDd~-----hyk~t~ 263 (265)
..-.||..|. . .++++.+|++.+ +++...+...|+.|.+.|.|-. .|.. .|..|.
T Consensus 36 w~l~IL~~L~-~------g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~ 97 (131)
T 1yyv_A 36 WGVLILVALR-D------GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTP 97 (131)
T ss_dssp HHHHHHHHGG-G------CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECH
T ss_pred cHHHHHHHHH-c------CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECc
Confidence 4455676664 2 368999999999 7999999999999999999998 6642 455553
No 251
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=82.37 E-value=2 Score=31.40 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=35.3
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++-+.+||.++. +|++..||++.|++++..|+.-+..+.
T Consensus 33 ~~Lt~re~~Vl~l~~--------~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA--------EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SSCCHHHHHHHHHHH--------HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568899999998864 389999999999999999888776554
No 252
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=82.31 E-value=1.3 Score=40.83 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
-+++.-|-.||.+|.+. .+.|++..+|+++++++...|...|+.|+..|.|.- -|+
T Consensus 400 ~~lt~~q~~vl~~l~~~----~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~ 456 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRS----ESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL 456 (487)
T ss_dssp CCCCHHHHHHHHHHHTC----SCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC
T ss_pred cCCCHHHHHHHHHHHhC----CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 46888888899999763 246899999999999999999999999999999988 554
No 253
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=82.24 E-value=4 Score=35.98 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=45.7
Q ss_pred EeEEEEEEEEEE---eee---CCCeEEEEEE------cCCC-------eEEEEEecccccccccccc-cCCCCEEEEEEE
Q 024592 67 VNTITVVGIVCD---MQD---KEPQFIFLID------DGTG-------RIECSRWAHEQMEFNEVNQ-ISKGMYVRVYGH 126 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~---~~t~~~y~Ld------DgTG-------~I~~~~w~~~~~~~~~~~~-~~~g~yVrV~G~ 126 (265)
++.|.|+|.|.. ++. ....+.|.|. |.+| -|.|..|...+. ..... ++.|+.|.|.|+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae--~~~~~~l~KG~~V~VeG~ 82 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAE--WQAERNLKGGDAVVVEGT 82 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHH--HHHHTCCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHH--HHHhhCCCCCCEEEEEEE
Confidence 688999999854 221 2245666662 1223 378888865332 12234 799999999999
Q ss_pred eee--eCCc---c----EEEEEEeeeCC
Q 024592 127 LKA--FQDK---R----SLNAYSLRPII 145 (265)
Q Consensus 127 i~~--f~~~---~----~i~~~~i~~v~ 145 (265)
|+. |.++ + .|.+..|..+.
T Consensus 83 L~~r~~~dkdG~~r~~~ev~a~~i~~l~ 110 (301)
T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRMEQLG 110 (301)
T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECS
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEee
Confidence 984 6543 2 35566665554
No 254
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=82.07 E-value=5.9 Score=33.96 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=51.6
Q ss_pred EEeEEEEEEEEEE---eeeC---CCeEEEEEE----------cCCCeEEEEEecccccccccccccCCCCEEEEEEEeee
Q 024592 66 DVNTITVVGIVCD---MQDK---EPQFIFLID----------DGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA 129 (265)
Q Consensus 66 ~v~~V~iVG~V~~---v~~~---~t~~~y~Ld----------DgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~ 129 (265)
.++.|.|+|+|.. ++.. ...+.|.|. |.|--|.|..|...+. ... .++.|+.|.|.|+|+.
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae--~~~-~l~KG~~V~V~G~l~~ 203 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAE--WAS-ELRKGDGLLVIGRLVN 203 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHH--HHT-TCCTTCEEEEEEEEEE
T ss_pred ceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHH--Hhh-hcCCCCEEEEEEEEEe
Confidence 3689999999965 2221 245667663 2233599999965432 224 8899999999999986
Q ss_pred --eC---Cc----cEEEEEEeeeCCC
Q 024592 130 --FQ---DK----RSLNAYSLRPIID 146 (265)
Q Consensus 130 --f~---~~----~~i~~~~i~~v~d 146 (265)
|. |+ ..|.+..|..+..
T Consensus 204 ~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 204 DSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred eEEECCCCCEEEEEEEEEEEEEECcc
Confidence 43 33 2477777777754
No 255
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=82.03 E-value=2 Score=36.12 Aligned_cols=50 Identities=6% Similarity=0.053 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.++..+..|+++++.. .++++.++++.++.+..-.+++|+.|+.+|.+.-
T Consensus 151 ~~~~~~~~il~~~~~~------g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~ 200 (218)
T 3cuq_B 151 KEEEMVASALETVSEK------GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCR 200 (218)
T ss_dssp CGGGGHHHHHHHHHHT------SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHC------CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE
Confidence 4567899999999753 4899999999999999999999999999999886
No 256
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=81.92 E-value=1.4 Score=37.71 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+++.-|=.||.+|.+. .+.|++..+|++.+.++...|...|+.|+..|.|.- -|+
T Consensus 31 ~lt~~q~~vL~~L~~~----~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~ 86 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQ----QENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSK 86 (250)
T ss_dssp SSCHHHHHHHHHHHSC----SCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECS
T ss_pred CCCHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCC
Confidence 5778888899999763 235899999999999999999999999999999998 554
No 257
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=81.53 E-value=5.1 Score=26.40 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=35.1
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++-++.|+...--- ...+|.+..||++.+++++..|+..+....
T Consensus 4 ~~L~~~er~il~l~~~l---~~~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGI---DMNTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCCCHHHHHHHHHHTTT---TSSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHcc---CCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34778888888776421 113599999999999999999888766543
No 258
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=81.49 E-value=4.4 Score=27.19 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=34.9
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHH----HHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLME----ALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~----al~~L~ 246 (265)
..|++-++.|+...--- ..++|.+..+|++.+++++..|+. ++..|-
T Consensus 9 ~~L~~~er~il~l~~~l---~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGL---IDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTT---TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhc---ccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45778888888765421 223699999999999999999887 445554
No 259
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=81.37 E-value=3.5 Score=34.64 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 218 NNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 218 ~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
...=++..+|+++|+.+..-||+||..|..+|.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~ 81 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV 81 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 345679999999999999999999999999999976
No 260
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=81.25 E-value=2.6 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
+..|+.++. +|.+..+|++.|++++..|+..+..+.
T Consensus 3 e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 3 ERQVLKLID--------EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHHH--------TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456777653 388999999999999999988776654
No 261
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=81.23 E-value=2.6 Score=31.96 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=42.5
Q ss_pred eEEeEEEEEEEEEE---eee--C-CCeEEEEEE------cC-CC-------eEEEEEec-ccccccccccccCCCCEEEE
Q 024592 65 ADVNTITVVGIVCD---MQD--K-EPQFIFLID------DG-TG-------RIECSRWA-HEQMEFNEVNQISKGMYVRV 123 (265)
Q Consensus 65 ~~v~~V~iVG~V~~---v~~--~-~t~~~y~Ld------Dg-TG-------~I~~~~w~-~~~~~~~~~~~~~~g~yVrV 123 (265)
..++.|.|+|.|.. ++. . ...+.|.|- |. +| -|.|..|. ..+. .....++.|+.|.|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae--~~~~~l~KG~~V~V 81 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVD--LIDKYLRKGRRVYV 81 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHH--HHHHHCCTTCEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHH--HHHhhcCCCCEEEE
Confidence 34789999999965 222 1 235666662 21 34 38888887 4332 12335899999999
Q ss_pred EEEee--eeCC
Q 024592 124 YGHLK--AFQD 132 (265)
Q Consensus 124 ~G~i~--~f~~ 132 (265)
.|+|+ .|.+
T Consensus 82 ~G~L~~~~~~d 92 (124)
T 3ulp_A 82 QGSLHTRKWHT 92 (124)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEeEEEeC
Confidence 99997 4654
No 262
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=81.18 E-value=0.3 Score=43.79 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..-+..||..|.. ..+++..+|+++|++++..|+..|+.|.++|.|..
T Consensus 19 ~~r~~~iL~~l~~------~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 19 LQERFQILRNIYW------MQPIGRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp ------------------------------------------------------
T ss_pred hHHHHHHHHHHHH------cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456668888765 34899999999999999999999999999999974
No 263
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=81.09 E-value=1.9 Score=33.18 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=40.5
Q ss_pred eEEeEEEEEEEEEE---ee--eCCCeEEEEEE------c-CCC--------eEEEEEecccccccccccccCCCCEEEEE
Q 024592 65 ADVNTITVVGIVCD---MQ--DKEPQFIFLID------D-GTG--------RIECSRWAHEQMEFNEVNQISKGMYVRVY 124 (265)
Q Consensus 65 ~~v~~V~iVG~V~~---v~--~~~t~~~y~Ld------D-gTG--------~I~~~~w~~~~~~~~~~~~~~~g~yVrV~ 124 (265)
..++.|.|+|.|.. +. .....+.|.|- | .+| -+.|..|...++ .....++.|+.|.|.
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae--~~~~~l~KG~~V~Ve 90 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLAT--NASGSLAVGDPVVVQ 90 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHH--HHHHHCCTTCEEEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCCCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHH--HHHHhcCCCCEEEEE
Confidence 45788999999854 11 11245666662 2 123 377888865332 123458999999999
Q ss_pred EEeee
Q 024592 125 GHLKA 129 (265)
Q Consensus 125 G~i~~ 129 (265)
|+|+.
T Consensus 91 GrL~~ 95 (128)
T 4dam_A 91 GRLKV 95 (128)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99975
No 264
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=80.85 E-value=2.5 Score=35.00 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=42.2
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-. .+
T Consensus 15 ~~rl~IL~~L~~-------~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 15 ETRRRILFLLTK-------RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHHHHH-------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 567789998853 2589999999999999999999999999999988 55
No 265
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=80.56 E-value=4.8 Score=31.56 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=38.1
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCC---------------------C--eEEEEEecccccccccccccCCCCEEEEE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGT---------------------G--RIECSRWAHEQMEFNEVNQISKGMYVRVY 124 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgT---------------------G--~I~~~~w~~~~~~~~~~~~~~~g~yVrV~ 124 (265)
.-+.+++.|+.+-.....+++.+.|.| | +|.+..|.+-+. -..+.+++|+||++.
T Consensus 15 ~F~Dl~~qVv~~~~~~~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~--~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 15 QRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDF--YCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEEEEEEEEEECSSCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHH--HHTTTCCTTCEEEEE
T ss_pred CeEEEEEEEEEEEcCCCeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHH--HHHhhCCCCCEEEEE
Confidence 457788888887655588888888887 2 456777765332 112458999999974
No 266
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=80.51 E-value=5.3 Score=32.89 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=37.2
Q ss_pred EEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEE-eeee-CCccEEEE
Q 024592 76 VCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGH-LKAF-QDKRSLNA 138 (265)
Q Consensus 76 V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~-i~~f-~~~~~i~~ 138 (265)
|........++.|.|.|.||.++|..+-.-. .-..++||-+|.+.= |+.- .++++|..
T Consensus 127 v~KK~v~~~~~~YeI~DnTG~MeVvv~G~~~-----~i~CEeGDKLrL~cFeL~~~~~~~~qL~s 186 (204)
T 3rlo_A 127 VHKKNVRGEFTYYEIQDNTGKMEVVVHGRLT-----TINCEEGDKLKLTCFELAPKSGNTGELRS 186 (204)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECGGGG-----GCCCCTTCEEEEEEEEEECCTTTTCEEEE
T ss_pred EEEEEeccceEEEEEecCCCcEEEEEeccCc-----ccccCCCCeeEEEEEEEecccCCceeEEE
Confidence 3344556679999999999999999764321 234578887766553 4432 24444443
No 267
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=80.41 E-value=2.8 Score=30.56 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=47.9
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHH-hcCCCHHHHHHHHHHHhhCCeEEe-ecCCceeec
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQ-QLNLPMDKLMEALESLNENSLVYS-IDEFHYKSA 262 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~-~l~~~~~~v~~al~~L~~eG~IYs-iDd~hyk~t 262 (265)
.+++..|-.||-+|... + .++..+|++ .++++...|-..|+-|+.+|.|=. -|| ...|
T Consensus 12 ~~L~~~QfsiL~~L~~~-----~-~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~~~D--l~LT 71 (95)
T 1bja_A 12 DVLNEKTATILITIAKK-----D-FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSGDG--LIIT 71 (95)
T ss_dssp TSSCHHHHHHHHHHHHS-----T-TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEETTE--EEEC
T ss_pred cCCCHHHHHHHHHHHHC-----C-CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecCCCC--eeeC
Confidence 46788899999999763 2 889999999 889999999999999999999954 333 5444
No 268
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=80.24 E-value=1.5 Score=34.91 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=39.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEee
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSI 254 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsi 254 (265)
..-.+|-+|... .+.-++.++|++++++++.-|+++|..|...|.|-+.
T Consensus 13 yAlr~l~~La~~----~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 13 VAVHSILYLDAH----RDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHTT----TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 334566666653 1345899999999999999999999999999999773
No 269
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=80.14 E-value=2.6 Score=29.79 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=35.0
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++.++.|+.++. +|.+..+|++.|++++..|+..+..+.
T Consensus 28 ~~Lt~~e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 28 EMLTEREMEILLLIA--------KGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp GGCCSHHHHHHHHHH--------TTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457888999998862 389999999999999999988876654
No 270
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=80.12 E-value=3 Score=28.20 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.|++.+..|+.++ . .|.+..+|++.+++++..|+..+..+.
T Consensus 16 ~L~~~e~~vl~l~-~-------~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 16 TLSERERQVLSAV-V-------AGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHCHHHHHHHHHH-T-------TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH-H-------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3667888888876 2 389999999999999999998776654
No 271
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=79.33 E-value=3.4 Score=32.60 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=39.8
Q ss_pred EeEEEEEEEEEEeeeC----CCeEEEEEE--------------cCCCeEEEEEeccc-ccccccccccCCCCEEEEEEEe
Q 024592 67 VNTITVVGIVCDMQDK----EPQFIFLID--------------DGTGRIECSRWAHE-QMEFNEVNQISKGMYVRVYGHL 127 (265)
Q Consensus 67 v~~V~iVG~V~~v~~~----~t~~~y~Ld--------------DgTG~I~~~~w~~~-~~~~~~~~~~~~g~yVrV~G~i 127 (265)
++.|.|+|.|..--+. ...+.|.|- +.|--+.|..|... +. ....-++.|+.|.|.|+|
T Consensus 6 ~NkV~LiGrLg~DPer~t~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe--~~~~yl~KG~~V~VeGrL 83 (148)
T 3k7u_C 6 VNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSA--EVKQKVKEGNVVCVNGRL 83 (148)
T ss_dssp CCCEEEEEEEEEEEEEESSSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHH--HHHHHCCTTCEEEEEEEE
T ss_pred CcEEEEEEEeccCCEeeeCCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHH--HHHhhCCCCCEEEEEEEE
Confidence 6788899988653222 234555552 22334889999764 32 123458999999999999
Q ss_pred ee
Q 024592 128 KA 129 (265)
Q Consensus 128 ~~ 129 (265)
+.
T Consensus 84 ~~ 85 (148)
T 3k7u_C 84 RL 85 (148)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 272
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=79.24 E-value=3.7 Score=33.05 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred EEeEEEEEEEEEE---eeeC---CCeEEEEEE--c------------CCCeEEEEEecc-cccccccccccCCCCEEEEE
Q 024592 66 DVNTITVVGIVCD---MQDK---EPQFIFLID--D------------GTGRIECSRWAH-EQMEFNEVNQISKGMYVRVY 124 (265)
Q Consensus 66 ~v~~V~iVG~V~~---v~~~---~t~~~y~Ld--D------------gTG~I~~~~w~~-~~~~~~~~~~~~~g~yVrV~ 124 (265)
-++.|.|+|+|.. ++.. ...+.|.|. . .|--|.|..|.. .+. .....++.|+.|.|.
T Consensus 22 ~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe--~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 22 MLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAK--IALQYLHKGSKVYIE 99 (169)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHH--HHHHHCCTTCEEEEE
T ss_pred ceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHH--HHHHhCCCCCEEEEE
Confidence 3689999999954 2221 234556552 1 123488889976 332 123458999999999
Q ss_pred EEeee
Q 024592 125 GHLKA 129 (265)
Q Consensus 125 G~i~~ 129 (265)
|+|+.
T Consensus 100 GrL~~ 104 (169)
T 3lgj_A 100 GKLQT 104 (169)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 273
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.97 E-value=4.9 Score=26.25 Aligned_cols=42 Identities=7% Similarity=0.026 Sum_probs=32.8
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
..+++.++.|+...-- .|.+..+|++.+++++..|+..+...
T Consensus 14 ~~L~~~~r~il~l~~~-------~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 14 ADLTTDQREALLLTQL-------LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp TSSCHHHHHHHHHHHT-------SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4577888888876432 48999999999999999988766543
No 274
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=78.74 E-value=2.9 Score=34.41 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 218 NNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 218 ~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
...=++..+|+++|+++..-||+||..|..+|.|-.
T Consensus 32 pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~ 67 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKV 67 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 344579999999999999999999999999999965
No 275
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=78.65 E-value=2.2 Score=35.52 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=37.0
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
-..+.|++|-.. ...+...+|+++|++++..|+.+++.|.+.|+|-.
T Consensus 16 s~EdYLk~I~~L-----~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~ 62 (200)
T 2p8t_A 16 TVEDVLAVIFLL-----KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp CHHHHHHHHHHT-----TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHH-----cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 344455544432 13589999999999999999999999999999954
No 276
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=78.65 E-value=3.3 Score=31.39 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=37.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~ 250 (265)
+.+...+++++ .|+++++||+.-+++..+|..-|..|+.+|.
T Consensus 20 ~t~~~t~~l~~--------~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 20 KMKVSIVQQID--------RKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHHHHHHHHH--------TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHH--------cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 46677888886 3999999999999999999999999999996
No 277
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=78.53 E-value=2.9 Score=35.58 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=45.1
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..++..+..||+++... -.++++++.+.++.+....+++|+.|+.+|.+.-
T Consensus 163 ~el~~D~~~vLe~a~~~------g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwv 213 (233)
T 1u5t_A 163 NELTSDQTKILEICSIL------GYSSISLLKANLGWEAVRSKSALDEMVANGLLWI 213 (233)
T ss_dssp SCCCTTHHHHHHTTTTT------SCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEE
T ss_pred CccchHHHHHHHHHHhc------CcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 35788999999988642 4799999999999999999999999999999875
No 278
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=78.08 E-value=6 Score=27.60 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=33.9
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
..|++-++.|+...--. ..++|.+..+|++.++++...|+..+..
T Consensus 17 ~~L~~~er~vl~l~~~l---~~~~~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGL---LDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp TTSCHHHHHHHHHHHTT---TTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcc---CCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45778888888764321 1246999999999999999998876643
No 279
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=77.84 E-value=3.2 Score=34.26 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=39.6
Q ss_pred hhHHHHHHHhcCc---CCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRP---EFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~---~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+...|++.|++. +......=++..+|+++|+++..-||+||..|..+|.|-.
T Consensus 16 ~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~ 71 (222)
T 3ihu_A 16 SASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDL 71 (222)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3555555554421 1123345688999999999999999999999999999976
No 280
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=77.36 E-value=3.3 Score=35.22 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..++..+..||+++... -.++++++.+.++.+....+++|+.|+.+|.+.-
T Consensus 150 ~el~~D~~~vLela~~~------g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 150 AELNMDHTVVLQLAEKN------GYVTVSEIKASLKWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp CCCCHHHHHHHHHHTTT------SEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred CccchHHHHHHHHHHhc------CcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEE
Confidence 45888999999998642 3799999999999999999999999999999875
No 281
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=77.19 E-value=7.7 Score=33.25 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=48.4
Q ss_pred EeEEEEEEEEEE---eee---CCCeEEEEEE------cCCC-------eEEEEEecccccccccccccCCCCEEEEEEEe
Q 024592 67 VNTITVVGIVCD---MQD---KEPQFIFLID------DGTG-------RIECSRWAHEQMEFNEVNQISKGMYVRVYGHL 127 (265)
Q Consensus 67 v~~V~iVG~V~~---v~~---~~t~~~y~Ld------DgTG-------~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i 127 (265)
++.|.|+|.|.. ++. ....+.|.|. |..| -|.|..|...+. .....++.|+.|.|.|+|
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae--~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAE--MWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH--HHTTTCCTTCEEEEEEEE
T ss_pred eeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHH--HHHHhCCCCCEEEEEEEE
Confidence 578888888854 221 1234555553 2223 378888865332 123458999999999999
Q ss_pred ee--eC--Cc----cEEEEEEeeeCCChh
Q 024592 128 KA--FQ--DK----RSLNAYSLRPIIDFN 148 (265)
Q Consensus 128 ~~--f~--~~----~~i~~~~i~~v~d~N 148 (265)
+. |. |+ ..|.+..|..+...+
T Consensus 83 ~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC---------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 64 64 22 247888888887644
No 282
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=77.16 E-value=0.69 Score=39.43 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=4.4
Q ss_pred Cc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 221 GV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 221 Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
=+ +..+++++++.+...||+||..|.++|.|+.
T Consensus 39 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 72 (247)
T 2ra5_A 39 LLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVR 72 (247)
T ss_dssp -----------------------------CEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35 7899999999999999999999999999986
No 283
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=76.47 E-value=3.9 Score=33.73 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=39.9
Q ss_pred CeEECCeEEeEEEEEEEEEE---eeeC---CCeEEEEEE------cC-CC-------eEEEEEecc-cccccccccccCC
Q 024592 59 SASIDGADVNTITVVGIVCD---MQDK---EPQFIFLID------DG-TG-------RIECSRWAH-EQMEFNEVNQISK 117 (265)
Q Consensus 59 ~f~i~g~~v~~V~iVG~V~~---v~~~---~t~~~y~Ld------Dg-TG-------~I~~~~w~~-~~~~~~~~~~~~~ 117 (265)
.+++. ..++.|.|+|+|.. ++.. ...+.|+|- |. +| -|.|..|.. .+. .....|+.
T Consensus 19 ~~~Ma-~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe--~~~~yL~K 95 (193)
T 3pgz_A 19 PGSMA-GSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVK--VVEQYLKK 95 (193)
T ss_dssp ----C-CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHH--HHHHHCCT
T ss_pred hhhHh-hhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHH--HHHhhcCC
Confidence 44443 34789999999955 2221 235566553 11 33 388888864 221 11235899
Q ss_pred CCEEEEEEEeee
Q 024592 118 GMYVRVYGHLKA 129 (265)
Q Consensus 118 g~yVrV~G~i~~ 129 (265)
|+.|.|.|+|+.
T Consensus 96 Gs~V~VeGrL~t 107 (193)
T 3pgz_A 96 GSKIYIEGQLQT 107 (193)
T ss_dssp TCEEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 999999999984
No 284
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.45 E-value=5.4 Score=28.05 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=32.0
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
..|+..++.|+.+.-- +|++..+|++.|++++..|+..+..
T Consensus 36 ~~L~~~~r~vl~l~~~-------~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYY-------RGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HTSCHHHHHHHHHHHT-------SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3577788888866332 4899999999999999998876654
No 285
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=76.42 E-value=4.5 Score=31.25 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=36.8
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.-.+|-+|... . + + +.++|++++++|+.-++++|..|...|.|-+
T Consensus 11 Al~~L~~La~~---~-~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 11 AIHILSLISMD---E-K-T-SSEIIADSVNTNPVVVRRMISLLKKADILTS 55 (145)
T ss_dssp HHHHHHHHHTC---S-C-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHhC---C-C-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 34455566543 1 2 4 9999999999999999999999999999987
No 286
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=76.27 E-value=4.4 Score=35.27 Aligned_cols=54 Identities=6% Similarity=0.047 Sum_probs=45.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
++-.|++.|.+ ..+++++|+++++.++.-++..|+.|...|.+-..++.+|+.|
T Consensus 29 ~~lgi~~~l~~-------~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t 82 (334)
T 2ip2_A 29 TRLGLADLIES-------GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (334)
T ss_dssp HHTTHHHHHHT-------TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHcCcHHHHhC-------CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecC
Confidence 45567888853 2589999999999999999999999999999876666788876
No 287
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=75.87 E-value=2.3 Score=36.04 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=42.1
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-. -.+
T Consensus 12 ~~R~~IL~~L~~-------g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~ 61 (232)
T 2qlz_A 12 KVRRDLLSHLTC-------MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKE 61 (232)
T ss_dssp HHHHHHHHHHTT-------TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeec
Confidence 567789999864 2478899999999999999999999999999988 444
No 288
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=75.82 E-value=1.6 Score=35.54 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=43.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCc--CHHHHHHhcCCC-HHHHHHHHHHHhhCCeEE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGV--HRNVISQQLNLP-MDKLMEALESLNENSLVY 252 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv--~~~~I~~~l~~~-~~~v~~al~~L~~eG~IY 252 (265)
.++..|..+++.|++. ..+.|+ +..+|++.++++ ...|.+.+..|...|.|-
T Consensus 3 ~lt~~q~~i~~~i~~~---~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~ 57 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDH---ISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIE 57 (202)
T ss_dssp CCCHHHHHHHHHHHHH---HHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHHHHHHH---HHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCce
Confidence 4677888899988864 235688 999999999998 899999999999887664
No 289
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=75.19 E-value=13 Score=28.33 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=45.9
Q ss_pred EEeEEEEEEEEEE---eee---CCCeEEEEEE------c------CCC-------eEEEEEecc-cccccccccccCCCC
Q 024592 66 DVNTITVVGIVCD---MQD---KEPQFIFLID------D------GTG-------RIECSRWAH-EQMEFNEVNQISKGM 119 (265)
Q Consensus 66 ~v~~V~iVG~V~~---v~~---~~t~~~y~Ld------D------gTG-------~I~~~~w~~-~~~~~~~~~~~~~g~ 119 (265)
.++.|.|+|.|.. +.. ....+.|.|. | .+| -+.|..|.+ .+. .....+..|+
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae--~~~~~l~KG~ 90 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRD--VAYQYVKKGS 90 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHH--HHHHHCCTTC
T ss_pred cCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHH--HHHhhCCCCC
Confidence 4789999999965 221 1245556553 1 123 255555652 221 1123589999
Q ss_pred EEEEEEEeee--eC---Cc----cEEEEEEeeeCCCh
Q 024592 120 YVRVYGHLKA--FQ---DK----RSLNAYSLRPIIDF 147 (265)
Q Consensus 120 yVrV~G~i~~--f~---~~----~~i~~~~i~~v~d~ 147 (265)
.|.|.|+|+. |. |+ ..|.+..|..+...
T Consensus 91 ~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 91 RIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 9999999985 53 22 35777777766543
No 290
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=74.94 E-value=5.8 Score=34.53 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=46.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
.++-.|++.|.+ ..++.++|+++++.++..++..|+.|...|.+-..+++.|..|.
T Consensus 25 a~~lglf~~l~~-------g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~ 80 (332)
T 3i53_A 25 AATLRVADHIAA-------GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTE 80 (332)
T ss_dssp HHHHTHHHHHHT-------TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECT
T ss_pred HHHcChHHHHhc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCH
Confidence 356668888853 26899999999999999999999999999988766677888763
No 291
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=74.70 E-value=3.8 Score=36.46 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=44.8
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
++-.|++.|.+. +..++.++|+++++.++.-++..|+.|...|.+ +-+++.|..|
T Consensus 36 ~~lgifd~L~~~-----~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l-~~~~~~y~~t 90 (363)
T 3dp7_A 36 LKFGIFQLLSGK-----REGYTLQEISGRTGLTRYAAQVLLEASLTIGTI-LLEEDRYVLA 90 (363)
T ss_dssp HHTTHHHHHHTC-----TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSE-EEETTEEEEC
T ss_pred HHhCHHHHHHhc-----CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCe-EecCCEEecc
Confidence 444577888652 247899999999999999999999999999988 5346788876
No 292
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=74.47 E-value=3.9 Score=34.15 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCc-CHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 219 NNGV-HRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 219 ~~Gv-~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+=+ +..+|+++|+++..-||+||..|..+|.|-.
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 3456 4679999999999999999999999999864
No 293
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=74.09 E-value=1.2 Score=36.33 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=38.7
Q ss_pred EeEEEEEEEEEEe---ee--CC-CeEEEEEE------c-CCC-------eEEEEEecccccccccccccCCCCEEEEEEE
Q 024592 67 VNTITVVGIVCDM---QD--KE-PQFIFLID------D-GTG-------RIECSRWAHEQMEFNEVNQISKGMYVRVYGH 126 (265)
Q Consensus 67 v~~V~iVG~V~~v---~~--~~-t~~~y~Ld------D-gTG-------~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~ 126 (265)
++.|.|+|+|..- +. .. ..+.|+|. | .|| -|.|..|...+. .....|+.|+.|.|.|+
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae--~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE--VASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHH--HHHHHCCTTCEEEECCE
T ss_pred eeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHH--HHHHhcCCCCEEEEEEE
Confidence 6889999999652 11 11 23444442 1 124 378888865332 12235899999999999
Q ss_pred eee
Q 024592 127 LKA 129 (265)
Q Consensus 127 i~~ 129 (265)
|+.
T Consensus 84 L~~ 86 (178)
T 1eqq_A 84 LRT 86 (178)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 294
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=72.43 E-value=5.2 Score=35.22 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=38.6
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
.++.++|+++++.++.-++..|+.|...|.+-. +++.|..|.
T Consensus 55 ~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~t~ 96 (348)
T 3lst_A 55 PRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFALTD 96 (348)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEecCH
Confidence 689999999999999999999999999999988 778888774
No 295
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=72.34 E-value=6.9 Score=31.90 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=39.4
Q ss_pred hhHHHHHHHhcCcCCCC---CCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 201 SIDQMVLDFLRRPEFLA---NNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~---~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
+...++..+|....... -..-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 163 ~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 163 DLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp SHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred CHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 46677777776542111 01237899999999999999999999999999873
No 296
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=72.08 E-value=4.8 Score=30.32 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=41.7
Q ss_pred CChhHHHHHHHhcCcC-CCCCCCCcCHHHHHHhc--CCCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPE-FLANNNGVHRNVISQQL--NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~-~~~~~~Gv~~~~I~~~l--~~~~~~v~~al~~L~~eG~IYs 253 (265)
...++.+|++.|.+=. ......|++.+++.+++ ++++.-+...|+.|+.+|.|-.
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~ 121 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQL 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEe
Confidence 3467777777765210 11346899999999987 4888889999999999998865
No 297
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=71.56 E-value=4.6 Score=32.66 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=29.2
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 7889999999999999999999999999873
No 298
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=71.40 E-value=1.8 Score=34.32 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=28.4
Q ss_pred HHHHHHhcC--------------CCHHHHHHHHHHHhhCCeEEe
Q 024592 224 RNVISQQLN--------------LPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 224 ~~~I~~~l~--------------~~~~~v~~al~~L~~eG~IYs 253 (265)
..++++.++ .+..-||+||+.|..+|.|..
T Consensus 70 ~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~ 113 (150)
T 2v7f_A 70 IERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEK 113 (150)
T ss_dssp HHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEE
Confidence 399999999 999999999999999999987
No 299
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=71.22 E-value=7.3 Score=35.52 Aligned_cols=55 Identities=9% Similarity=-0.041 Sum_probs=46.4
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCcee
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYK 260 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk 260 (265)
++.....||++|.. ..+++++|+++++++..+|..+|-+|.=.|.|-..-...|+
T Consensus 326 l~~~~~~vl~~l~~-------~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~~~Gg~~~ 380 (382)
T 3maj_A 326 DTGDRTRILALLGP-------SPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGGSLVS 380 (382)
T ss_dssp CTTHHHHHHHHCCS-------SCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECTTSEEE
T ss_pred CChHHHHHHHhhCC-------CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEeCCCceEe
Confidence 55667889999853 36899999999999999999999999999999875555554
No 300
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=71.14 E-value=6.1 Score=29.51 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=41.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc------CCCHHHHHHHHHHHhhCCeEEe-ecCC-------ceeeccC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL------NLPMDKLMEALESLNENSLVYS-IDEF-------HYKSAVN 264 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l------~~~~~~v~~al~~L~~eG~IYs-iDd~-------hyk~t~~ 264 (265)
.+.-.||.+|... -.+--+|++.+ ++++..|..+|..|.++|.|-+ ..+. .|..|.-
T Consensus 11 ~l~~~IL~lL~~~-------p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 81 (117)
T 4esf_A 11 SLEGCVLEIISRR-------ETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEA 81 (117)
T ss_dssp HHHHHHHHHHHHS-------CBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHH
T ss_pred hHHHHHHHHHHcC-------CCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHH
Confidence 3566788888742 24556666665 6899999999999999999998 6421 4766643
No 301
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=71.06 E-value=3.7 Score=32.01 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=39.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--------CCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL--------NLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--------~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
.++-.||.+|.+. .++.-+|++.+ .++...|..+|..|.++|.|-. .+
T Consensus 41 ~~~~~IL~~L~~~-------~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~ 97 (145)
T 1xma_A 41 YVDTIILSLLIEG-------DSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYG 97 (145)
T ss_dssp THHHHHHHHHHHC-------CEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHhC-------CCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEe
Confidence 5788899998641 35777777766 5999999999999999999988 54
No 302
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=70.99 E-value=7 Score=28.43 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALE 243 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~ 243 (265)
.|++-++.|+.+---. ...+|.+.++|++.++++...|+..+.
T Consensus 19 ~Lp~reR~Vi~Lry~l---~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 19 GLTAREAKVLRMRFGI---DMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred cCCHHHHHHHHHHHhc---CCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4677888888764321 224699999999999999999887643
No 303
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=70.87 E-value=3.4 Score=29.65 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=39.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
+.+.+||..+... .++++.+|++.++++.+.|...|..|.+. .|-. -+.
T Consensus 27 ~~Rl~IL~~l~~~------~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~g 76 (99)
T 2zkz_A 27 PMRLKIVNELYKH------KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQG 76 (99)
T ss_dssp HHHHHHHHHHHHH------SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEET
T ss_pred HHHHHHHHHHHHC------CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeC
Confidence 5667788554332 25899999999999999999999999999 8765 443
No 304
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=70.08 E-value=6.6 Score=33.96 Aligned_cols=53 Identities=8% Similarity=0.039 Sum_probs=43.7
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
++-.|++.|.+ ..+++++|+++++.++.-++..|+.|...|.+-. ++++|+.|
T Consensus 27 ~~l~i~~~l~~-------~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~-~~~~y~~t 79 (335)
T 2r3s_A 27 VELNVFTAISQ-------GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK-QAEGYRLT 79 (335)
T ss_dssp HHTTHHHHHTT-------SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC
T ss_pred HHcChHHHHhc-------CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe-cCCEEecC
Confidence 44557787753 2589999999999999999999999999999844 56788865
No 305
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=69.67 E-value=7.2 Score=34.25 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=45.0
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
.+..|++.|.. ..+++.+|++++++++.-++..|+.|...|.+-...+..|..|.
T Consensus 40 ~~l~i~~~l~~-------~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~ 94 (360)
T 1tw3_A 40 ATLRLVDHILA-------GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTE 94 (360)
T ss_dssp HHTTHHHHHHT-------TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECT
T ss_pred HHhCHHHHHhC-------CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCH
Confidence 45567888843 24799999999999999999999999999999775566888663
No 306
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=69.16 E-value=9 Score=32.97 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=42.3
Q ss_pred EEeEEEEEEEEEEeee----CCCeEEEEEE------cC--------CCeEEEEEeccc--ccccccccccCCCCEEEEEE
Q 024592 66 DVNTITVVGIVCDMQD----KEPQFIFLID------DG--------TGRIECSRWAHE--QMEFNEVNQISKGMYVRVYG 125 (265)
Q Consensus 66 ~v~~V~iVG~V~~v~~----~~t~~~y~Ld------Dg--------TG~I~~~~w~~~--~~~~~~~~~~~~g~yVrV~G 125 (265)
.++.|.|+|.+.+.+. ......|+|- |+ |--+.|..|... +. -...++.|+.|.|.|
T Consensus 145 ~lNkV~LiGrL~DPElR~t~G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE---i~~~L~KG~~V~VeG 221 (257)
T 4dni_A 145 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE---VKQKVKEGNVVCVNG 221 (257)
T ss_dssp CEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH---HHHHCCTTCEEEEEE
T ss_pred ccCEEEEEEEcCCCEEEEeCCcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH---HHhhCCCCCEEEEEE
Confidence 3799999999954432 2345667762 21 223889999764 32 234599999999999
Q ss_pred Eeee
Q 024592 126 HLKA 129 (265)
Q Consensus 126 ~i~~ 129 (265)
+|+.
T Consensus 222 rL~t 225 (257)
T 4dni_A 222 RLRL 225 (257)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 307
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=69.05 E-value=6 Score=37.98 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=43.0
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-------CCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN-------LPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-------~~~~~v~~al~~L~~eG~IYs 253 (265)
+..+.+|++++.+ ..|++..++++.|+ .+..-.+++|+.|+.+|.+.-
T Consensus 493 ~~~~~~il~l~~~------~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~r 547 (566)
T 1w7p_D 493 DVVKEKLVDLIGD------NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLI 547 (566)
T ss_dssp HHHHHHHHHHHTT------STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHh------cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEE
Confidence 4788899998865 25999999999999 999999999999999999875
No 308
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=68.67 E-value=8.6 Score=33.54 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHHhcCcC-CCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 197 DEGKSIDQMVLDFLRRPE-FLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~-~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
..+.+..+.||++|++.. ...=..=-+.++|.+.|+++-...+.||-.|..+|.|+.-+
T Consensus 220 ~~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~~ 279 (285)
T 3go5_A 220 EMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQ 279 (285)
T ss_dssp CCCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEET
T ss_pred hccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEcC
Confidence 346788999999998643 11112234789999999999999999999999999998743
No 309
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.65 E-value=3 Score=38.18 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.=|+.+.|++.|++++++++..|-.|+.+|.|+- ||-
T Consensus 315 srIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq 352 (394)
T 3txn_A 315 SRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQ 352 (394)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEET
T ss_pred ceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcC
Confidence 4599999999999999999999999999999999 986
No 310
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=67.95 E-value=7.8 Score=28.79 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=41.9
Q ss_pred hhHHH-HHHHhcCcCCCCCCCCcCHHHHHHh----cCCCHHHHHHHHHHHhhCCeEEe-ecC--------CceeeccCC
Q 024592 201 SIDQM-VLDFLRRPEFLANNNGVHRNVISQQ----LNLPMDKLMEALESLNENSLVYS-IDE--------FHYKSAVNA 265 (265)
Q Consensus 201 ~~~~~-Vl~~i~~~~~~~~~~Gv~~~~I~~~----l~~~~~~v~~al~~L~~eG~IYs-iDd--------~hyk~t~~~ 265 (265)
.+.-. ||.+|.+. .-.|..+...++. ++++...|..+|..|.++|.|-+ .++ -.|+.|..|
T Consensus 21 ~l~~~~IL~lL~~~----~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G 95 (115)
T 2dql_A 21 EVAICYILYVLLQG----ESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEW 95 (115)
T ss_dssp HHHHHHHHHHHTTS----CBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGG
T ss_pred hHHHHHHHHHHHhC----CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHH
Confidence 45555 89999753 2345544333332 25899999999999999999998 543 148777654
No 311
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=67.78 E-value=50 Score=27.20 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=35.6
Q ss_pred eeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEE-EeeeeCCccEEE
Q 024592 79 MQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYG-HLKAFQDKRSLN 137 (265)
Q Consensus 79 v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G-~i~~f~~~~~i~ 137 (265)
.......+.|.|.|.||.++|...-.-. .-..++|+-+|.+. .++.-.++.+|.
T Consensus 138 k~v~~~~~~yeI~D~tG~MeVvv~G~~~-----~i~CeeGdkLrL~cF~L~~~~~~~~L~ 192 (206)
T 2oq0_A 138 KTVNQKTTIYEIQDDRGKMDVVGTGQCH-----NIPCEEGDKLQLFCFRLRKKNQMSKLI 192 (206)
T ss_dssp EEECSSEEEEEEEETTEEEEEEEEGGGS-----SCCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EeeccceEEEEEccCCCcEEEEEeCccc-----ccccCCCCEEEEEEEEeeccCCcceEE
Confidence 3456679999999999999999764321 23457788776654 244444444444
No 312
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=67.52 E-value=4.4 Score=30.18 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=37.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc------CCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL------NLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l------~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
.++-.||.+|.+. -.+--+|++.+ .++...|..+|..|.++|.|-+ .+
T Consensus 9 ~l~~~IL~~L~~~-------~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~ 63 (115)
T 4esb_A 9 VLEGCILYIISQE-------EVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLK 63 (115)
T ss_dssp THHHHHHHHHHHS-------CEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcC-------CCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEee
Confidence 4778899999742 24556666665 4899999999999999999998 54
No 313
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=67.13 E-value=5.3 Score=33.17 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=43.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
.-+-.+|..|..........|+++.+++++|+++.+.|-..|+.|.+.|.+.- .|
T Consensus 7 ~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~ 62 (230)
T 3cta_A 7 DQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVT 62 (230)
T ss_dssp CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 35556777775543334457899999999999999999999999999998877 55
No 314
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=66.64 E-value=9.3 Score=28.85 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
.|++.++.|+. +.- .|++..+|++.|+++...|+..+..
T Consensus 109 ~L~~~~r~v~~-~~~-------~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-------RGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHT-------TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-------cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 56777777776 322 4999999999999999999876654
No 315
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=66.47 E-value=7.9 Score=34.14 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=43.8
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCC--ceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEF--HYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~--hyk~t 262 (265)
++..|++.|.. ..+++++|+++++.++.-++..|+.|...|.+-..+++ .|..|
T Consensus 37 ~~l~i~~~l~~-------~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t 92 (374)
T 1qzz_A 37 ATLRLVDHLLA-------GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPT 92 (374)
T ss_dssp HHTTHHHHHHT-------TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEEC
T ss_pred HHcChHHHHhC-------CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEEC
Confidence 45567888843 24899999999999999999999999999998765555 78766
No 316
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=66.17 E-value=12 Score=32.80 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=43.4
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
++-.|++.|.+ ..+++++|+++++.++.-++..|+.|...|.+-..+ +.|+.|
T Consensus 52 ~~lgif~~L~~-------~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~t 104 (359)
T 1x19_A 52 IELDLFSHMAE-------GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSLT 104 (359)
T ss_dssp HHHTHHHHHTT-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred HHcCcHHHHcC-------CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEecC
Confidence 45567777753 368999999999999999999999999999886643 488766
No 317
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=65.92 E-value=5.9 Score=31.37 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.7
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 36889999999999999999999999999983
No 318
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=65.91 E-value=9.8 Score=31.71 Aligned_cols=43 Identities=9% Similarity=0.008 Sum_probs=36.7
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNE 247 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~ 247 (265)
..|++-+.+||.++. .|.+..+|++.|++++..|+.-+..+..
T Consensus 174 ~~Lt~re~~vl~~~~--------~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 174 VRLTARETEMLKWTA--------VGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp CCCCHHHHHHHHHHH--------TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468899999999984 3899999999999999999988876643
No 319
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=65.81 E-value=7.9 Score=28.22 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=41.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc----CCCHHHHHHHHHHHhhCCeEEe-ec--CC----ceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL----NLPMDKLMEALESLNENSLVYS-ID--EF----HYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l----~~~~~~v~~al~~L~~eG~IYs-iD--d~----hyk~t~ 263 (265)
.++-.||.+|.+. ..+--+|++.+ +++...|..+|..|.++|.|-. .+ +. .|..|.
T Consensus 9 ~l~~~IL~~L~~~-------~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~ 75 (108)
T 3l7w_A 9 LIEYLILAIVSKH-------DSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTD 75 (108)
T ss_dssp HHHHHHHHHHHHS-------CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECH
T ss_pred HHHHHHHHHHHcC-------CCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECH
Confidence 4677789988642 24555666554 7999999999999999999998 54 22 366664
No 320
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=65.68 E-value=9.2 Score=24.51 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=30.1
Q ss_pred HHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEe
Q 024592 206 VLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 206 Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYs 253 (265)
|+.++++ +..+++++|++.| +++...|+..|++| |.| .
T Consensus 10 i~~ll~~------~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v-~ 52 (64)
T 2p5k_A 10 IREIITS------NEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV-K 52 (64)
T ss_dssp HHHHHHH------SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE-E
T ss_pred HHHHHHc------CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE-E
Confidence 5556654 2368999999999 89999999999955 677 5
No 321
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=65.57 E-value=6.1 Score=31.34 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=29.6
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 36889999999999999999999999999884
No 322
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=65.38 E-value=9.4 Score=28.30 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=39.4
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--------CCCHHHHHHHHHHHhhCCeEEe-ecC---C----ceeeccC
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQL--------NLPMDKLMEALESLNENSLVYS-IDE---F----HYKSAVN 264 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--------~~~~~~v~~al~~L~~eG~IYs-iDd---~----hyk~t~~ 264 (265)
++-.||.+|.+. +-.| -+|.+.+ .+++..|..+|..|.++|.|-+ .++ + .|..|..
T Consensus 13 l~~~IL~~L~~~----~~~G---yei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~ 84 (116)
T 3f8b_A 13 TNVILLNVLKQG----DNYV---YGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHHHC----CBCH---HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHH
T ss_pred HHHHHHHHHHhC----CCCH---HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHH
Confidence 666788888652 1234 4444443 6999999999999999999998 642 1 4666653
No 323
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=65.28 E-value=6.1 Score=31.51 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=37.7
Q ss_pred hhHHHHHHHhcCcC--CCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 201 SIDQMVLDFLRRPE--FLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~--~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
+...+|..+|.... ...-..-++.++|++.++++.+.|..++..|.++|.|-
T Consensus 141 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 141 EARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 34555655553210 00113457899999999999999999999999999984
No 324
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=65.14 E-value=8.8 Score=26.27 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=40.1
Q ss_pred CCChh-HHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-CCHHHHHHHHHHHhhCCeEEeecC
Q 024592 198 EGKSI-DQMVLDFLRRPEFLANNNGVHRNVISQQLN-LPMDKLMEALESLNENSLVYSIDE 256 (265)
Q Consensus 198 ~l~~~-~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-~~~~~v~~al~~L~~eG~IYsiDd 256 (265)
.++.. +++|+++|+..+ .-..-.|++.|| -+..+|+-.|-.|...+.+ ..||
T Consensus 6 qls~~~ee~I~~fL~~~G------p~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL-~~De 59 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNG------PQRALVIAQALGMRTAKDVNRDLYRMKSRHLL-DMDE 59 (72)
T ss_dssp CCSSHHHHHHHHHHHHHC------SEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSE-EECT
T ss_pred hhhhhhHHHHHHHHHHcC------CchHHHHHHHhCcchhhhcCHHHHHHHHccCc-CCCC
Confidence 45555 677999999752 335678999998 4556699999999999999 6565
No 325
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=64.98 E-value=6.4 Score=31.24 Aligned_cols=31 Identities=3% Similarity=0.163 Sum_probs=29.3
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6889999999999999999999999999984
No 326
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=64.80 E-value=8.5 Score=29.69 Aligned_cols=40 Identities=5% Similarity=0.057 Sum_probs=31.8
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALE 243 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~ 243 (265)
..|++.++.|+.+.. -+|++..||++.|++++..|+..|.
T Consensus 92 ~~Lp~~~r~vl~L~~-------~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 92 ARMTPLSRQALLLTA-------MEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp TTSCTTHHHHHTTTS-------SSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 467888888885532 2599999999999999999876654
No 327
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=64.56 E-value=6.4 Score=35.04 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=37.2
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCc-eeec
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFH-YKSA 262 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~h-yk~t 262 (265)
.++.++|+++++.++.-++..|+.|...|.+-..+++. |..|
T Consensus 71 ~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t 113 (369)
T 3gwz_A 71 PRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQN 113 (369)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEECC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEecC
Confidence 58999999999999999999999999999887755667 8765
No 328
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.24 E-value=2.9 Score=38.67 Aligned_cols=37 Identities=11% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.=|+++.|++.|++++++++..|..|+.+|.|+- ||-
T Consensus 358 s~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq 395 (445)
T 4b4t_P 358 SRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNR 395 (445)
T ss_dssp EEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEET
T ss_pred ceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 3589999999999999999999999999999999 985
No 329
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=64.21 E-value=9.1 Score=28.50 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=41.7
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc------CCCHHHHHHHHHHHhhCCeEEe-ecC--C-----ceeeccC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL------NLPMDKLMEALESLNENSLVYS-IDE--F-----HYKSAVN 264 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l------~~~~~~v~~al~~L~~eG~IYs-iDd--~-----hyk~t~~ 264 (265)
.++-.||.+|.+. -.+--+|.+.+ .+++..|..+|..|.++|.|-+ .++ . .|..|.-
T Consensus 13 ~l~~~IL~lL~~~-------p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~ 83 (116)
T 3hhh_A 13 ILEGLVLAIIQRK-------ETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSS 83 (116)
T ss_dssp HHHHHHHHHHHHS-------CBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHH
T ss_pred hHHHHHHHHHhcC-------CCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHH
Confidence 4677899998752 13445666665 5899999999999999999988 542 1 4776653
No 330
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=63.97 E-value=6.7 Score=31.32 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=29.7
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLV 251 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~I 251 (265)
-++.++|++.++++.+.|..+|..|.++|.|
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I 199 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLV 199 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 5789999999999999999999999999998
No 331
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=63.54 E-value=6.9 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=29.4
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 6889999999999999999999999999984
No 332
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=63.41 E-value=6.9 Score=30.54 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=39.0
Q ss_pred hHHHHHH-HhcCcCCCCCC-CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLD-FLRRPEFLANN-NGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~-~i~~~~~~~~~-~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
+....|+ ++++-+ .. .=|+...|+++|++..+=-|.+|++|.+.|.|-.
T Consensus 45 fDk~tydKL~KEVp---k~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~ 95 (143)
T 2xzm_8 45 IEKKNVESIINNPS---KVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEK 95 (143)
T ss_dssp CCHHHHHHHHTCCT---TSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEE
T ss_pred ecHHHHHHHHHHhc---ccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEE
Confidence 4455665 444542 23 5689999999999999999999999999999966
No 333
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=62.96 E-value=15 Score=27.10 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=30.5
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
|++-++.|+.+.-- .|.+..+|++.+++++..|+..+..
T Consensus 26 L~~~~r~vl~l~~~-------~g~s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 26 LTNKQRNYLELFYL-------EDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp SCHHHHHHHHHHHT-------SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56777888876532 4899999999999999998776544
No 334
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.79 E-value=7.2 Score=31.53 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=29.8
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 46899999999999999999999999999983
No 335
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=62.55 E-value=1.6 Score=42.16 Aligned_cols=47 Identities=6% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
...+.|+++|++. ..++..+|++.|+++..+++.+|..|+++|.|-.
T Consensus 516 ~~~~~I~~~l~~~------g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~ 562 (583)
T 3lmm_A 516 ELTNAAMLWLSEV------GDLATSDLMAMCGVSRGTAKACVDGLVDEERVVA 562 (583)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 4567899999874 2589999999999999999999999999999843
No 336
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=62.11 E-value=5.7 Score=31.38 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=29.2
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
++.++|++.++++.+.|..+|..|.++|.|=
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6889999999999999999999999999883
No 337
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=61.97 E-value=7.4 Score=31.42 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=34.7
Q ss_pred EEEEEEcCCCeEEEEEeccccc------c-------cccc-cccCC-C----------------CEEEEEEEeeeeCCcc
Q 024592 86 FIFLIDDGTGRIECSRWAHEQM------E-------FNEV-NQISK-G----------------MYVRVYGHLKAFQDKR 134 (265)
Q Consensus 86 ~~y~LdDgTG~I~~~~w~~~~~------~-------~~~~-~~~~~-g----------------~yVrV~G~i~~f~~~~ 134 (265)
+.+.|.|.||.+.+..|.+... + +.+. ..+.+ + =.+||..+...|++..
T Consensus 77 l~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~~k~~~frlr~k~e~ynde~ 156 (172)
T 3u50_C 77 LRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIFEIQFENKEFNNEQ 156 (172)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTTTCEEEEEEEEEECC-----
T ss_pred EEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhcCcEEEEEEEEEEcccCCEe
Confidence 7889999999999999964322 1 0111 11111 1 2488999999999875
Q ss_pred E--EEEEEeeeC
Q 024592 135 S--LNAYSLRPI 144 (265)
Q Consensus 135 ~--i~~~~i~~v 144 (265)
. .++..+.||
T Consensus 157 Rvr~tv~~~~p~ 168 (172)
T 3u50_C 157 EIAYKVLKIEKE 168 (172)
T ss_dssp -EEEEEEEEEEC
T ss_pred EEEEEEEEeeec
Confidence 4 467777777
No 338
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=61.90 E-value=5.4 Score=29.63 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=42.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc------C--CCH-HHHHHHHHHHhhCCeEEe-ecC-C-----ceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL------N--LPM-DKLMEALESLNENSLVYS-IDE-F-----HYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l------~--~~~-~~v~~al~~L~~eG~IYs-iDd-~-----hyk~t~ 263 (265)
.++-.||.+|.+. ..+.-+|++.+ . ++. ..|..+|..|.++|.|-. .++ + .|..|.
T Consensus 13 ~~~~~IL~~L~~~-------~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 13 WLASTILLLVAEK-------PSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHS-------CBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred hHHHHHHHHHHcC-------CCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 4777899998642 35777888777 3 788 899999999999999998 653 1 466664
No 339
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=61.78 E-value=7.9 Score=31.32 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 457899999999999999999999999999984
No 340
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=61.56 E-value=11 Score=27.88 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=29.2
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhh
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNE 247 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~ 247 (265)
.|++.++. |.+.++|++.+ .++.++|..||.+-..
T Consensus 56 ~Il~~l~~--------G~s~eeIl~~yP~Lt~edI~aAL~Ya~~ 91 (106)
T 2ga1_A 56 TLVAYRQQ--------GAPDKELLANYPGLTAEDLSAAWHYYEQ 91 (106)
T ss_dssp HHHHHHHT--------TCCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc--------CCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 36677753 89999999999 8999999999988653
No 341
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=61.55 E-value=15 Score=30.37 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=35.3
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++-+++|+.++. +|.+..||++.|++++..|+.-+..+.
T Consensus 172 ~~Lt~~e~~vl~~~~--------~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 172 AWLDPKEATYLRWIA--------VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCCHHHHHHHHHHT--------TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358889999998863 389999999999999999988776653
No 342
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.50 E-value=7.7 Score=31.90 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=29.9
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 46889999999999999999999999999984
No 343
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.90 E-value=4 Score=37.45 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 219 NNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
-.=|+++.+++.|+++++++.+.|..|+.+|.|.- ||-
T Consensus 345 Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~ 383 (429)
T 4b4t_R 345 YKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDR 383 (429)
T ss_dssp CSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred hceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 34689999999999999999999999999999999 996
No 344
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=60.82 E-value=8.1 Score=31.01 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=29.9
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999884
No 345
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.53 E-value=11 Score=31.66 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=36.9
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
....|+-.|.. .+.+..+|++.+++++++|...|..|.+.|.|-.
T Consensus 166 ~~~~l~~~l~~-------~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~ 210 (232)
T 2qlz_A 166 QLAILHYLLLN-------GRATVEELSDRLNLKEREVREKISEMARFVPVKI 210 (232)
T ss_dssp HHHHHHHHHHS-------SEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHhc-------CCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE
Confidence 45555555543 3789999999999999999999999999999843
No 346
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=60.23 E-value=14 Score=30.59 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.|++-+++||..+. +|.+..||++.|++++..|+.-+..+.
T Consensus 175 ~Lt~~e~~vl~~~~--------~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 175 MLSPREMLCLVWAS--------KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp SCCHHHHHHHHHHH--------TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57889999998874 389999999999999999988776553
No 347
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=60.02 E-value=8.5 Score=30.99 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=29.8
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 37899999999999999999999999999884
No 348
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=58.53 E-value=34 Score=29.33 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=49.6
Q ss_pred eEEeEEEEEEEEEEeeeC--CC----eEEEEEEcC-------CC-eEEEEEec-ccccccccccccCCCCEEEEEEEeee
Q 024592 65 ADVNTITVVGIVCDMQDK--EP----QFIFLIDDG-------TG-RIECSRWA-HEQMEFNEVNQISKGMYVRVYGHLKA 129 (265)
Q Consensus 65 ~~v~~V~iVG~V~~v~~~--~t----~~~y~LdDg-------TG-~I~~~~w~-~~~~~~~~~~~~~~g~yVrV~G~i~~ 129 (265)
+-++.|.|+|++..-+.+ .. .++|.++-. +- -|.|..|- +.++ ....-++.|+.|-|.|+|+.
T Consensus 28 r~~N~viLiGrLtrdElRyT~~g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE--~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSS--RVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHH--HHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEeceEEEECCCCCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHH--HHHHhccCCCEEEEEEEEEE
Confidence 347899999999765321 11 233433322 12 36777897 4332 12345899999999999999
Q ss_pred eCC---c----cEEEEEEeeeCC
Q 024592 130 FQD---K----RSLNAYSLRPII 145 (265)
Q Consensus 130 f~~---~----~~i~~~~i~~v~ 145 (265)
|.. . -.+.+..+.|+.
T Consensus 106 ~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp EEEECSSSSSEEEEEEEEECTTT
T ss_pred eECCCCCcEEEEEEEEEEEEecC
Confidence 742 1 357777777753
No 349
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=58.37 E-value=15 Score=26.00 Aligned_cols=42 Identities=12% Similarity=0.244 Sum_probs=30.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
++-++|.++|.+.- .+.-+++++|++.+++++..+...+...
T Consensus 2 ~~~~~i~~~i~~~~---~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 2 NAKELIQNIIEESY---TDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHHT---TCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc---cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35567888887652 2346899999999998888877766554
No 350
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=58.02 E-value=11 Score=30.19 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=40.2
Q ss_pred EEeEEEEEEEEEEe---eeC-CCeEEEEE--E----c---C-----CCeEEEEEeccc-ccccccccccCCCCEEEEEEE
Q 024592 66 DVNTITVVGIVCDM---QDK-EPQFIFLI--D----D---G-----TGRIECSRWAHE-QMEFNEVNQISKGMYVRVYGH 126 (265)
Q Consensus 66 ~v~~V~iVG~V~~v---~~~-~t~~~y~L--d----D---g-----TG~I~~~~w~~~-~~~~~~~~~~~~g~yVrV~G~ 126 (265)
.++.|.|||.+..- ... .....|+| + | + |--+.|..|... ++ ....-++.|+.|-|.|+
T Consensus 21 smNkViLiGrLg~DPElR~t~~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE--~~~~yL~KGs~V~VeGr 98 (164)
T 3k81_C 21 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSA--EVKQKVKEGNVVCVNGR 98 (164)
T ss_dssp CEEEEEEEEEEECCCCEESSSCEECCEEEEECCC--------CCCCCEEEEEEECCHHHHH--HHHHHCCTTCEEEECCE
T ss_pred CCcEEEEEEEeccCCEEEEcCccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHH--HHHhhcCCCCEEEEEEE
Confidence 37999999999652 211 22333443 2 1 1 334999999764 32 12345899999999999
Q ss_pred eee
Q 024592 127 LKA 129 (265)
Q Consensus 127 i~~ 129 (265)
|+.
T Consensus 99 L~t 101 (164)
T 3k81_C 99 LRL 101 (164)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 351
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=57.97 E-value=9 Score=30.61 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=26.7
Q ss_pred CCCcCHHHHHHhcC--CCHHHHHHHHHHHhh
Q 024592 219 NNGVHRNVISQQLN--LPMDKLMEALESLNE 247 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~--~~~~~v~~al~~L~~ 247 (265)
++++++++|++.++ .+.++|+++|+.|..
T Consensus 20 ~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 20 EEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 56899999999998 999999999999975
No 352
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=57.93 E-value=9.5 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=29.2
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6789999999999999999999999999984
No 353
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=57.76 E-value=8.5 Score=27.74 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=29.7
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
-+..|+++|... ++++.+|++.++.+...|+.+|..
T Consensus 8 R~~~I~~~l~~~-------~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 8 RTIKIGKYIVET-------KKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHH-------CCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-------CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 456788888753 489999999999999999988753
No 354
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=57.71 E-value=14 Score=28.49 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHh----cCCCHHHHHHHHHHHhhCCeEEe-ecC----C----ceeeccCC
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQ----LNLPMDKLMEALESLNENSLVYS-IDE----F----HYKSAVNA 265 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~----l~~~~~~v~~al~~L~~eG~IYs-iDd----~----hyk~t~~~ 265 (265)
..-.||.+|.+. .-.|..+..-++. ++++...|..+|..|.++|.|-+ .++ . .|+.|..|
T Consensus 35 ~~~~IL~lL~~~----~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~G 107 (138)
T 2e1n_A 35 AVCYVLAVLRHE----DSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQAN 107 (138)
T ss_dssp HHHHHHHHHTTS----CEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSC
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHH
Confidence 344488888752 2234443322221 35999999999999999999988 543 1 48888765
No 355
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=57.67 E-value=82 Score=27.05 Aligned_cols=56 Identities=14% Similarity=0.313 Sum_probs=38.6
Q ss_pred eEEEEEEEEEEeee-CCCeEEEEEEcCCCe----------------------------EEEEEecccccccccccccCCC
Q 024592 68 NTITVVGIVCDMQD-KEPQFIFLIDDGTGR----------------------------IECSRWAHEQMEFNEVNQISKG 118 (265)
Q Consensus 68 ~~V~iVG~V~~v~~-~~t~~~y~LdDgTG~----------------------------I~~~~w~~~~~~~~~~~~~~~g 118 (265)
..+-|+++|+.+.. ......+.+-|+|+. +++..|.+.. .....+++|
T Consensus 155 ~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~---~~~~~lk~G 231 (294)
T 1xjv_A 155 QYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHV---HVARSLKVG 231 (294)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHH---HHHHHCCTT
T ss_pred CeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchh---HHHhcCCCC
Confidence 45789999997753 356788899998863 4555665432 113468999
Q ss_pred CEEEEEEE
Q 024592 119 MYVRVYGH 126 (265)
Q Consensus 119 ~yVrV~G~ 126 (265)
++|++..-
T Consensus 232 d~V~l~Nv 239 (294)
T 1xjv_A 232 SFLRIYSL 239 (294)
T ss_dssp CEEEEEEE
T ss_pred cEEEEeee
Confidence 99998654
No 356
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=57.49 E-value=9.9 Score=31.26 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=29.9
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++.+.|..+|..|.++|.|=
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILD 208 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE
Confidence 46899999999999999999999999999983
No 357
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=57.37 E-value=7.2 Score=31.34 Aligned_cols=33 Identities=9% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.-++.++|++.++++.+.|..+|..|.++|.|-
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 346889999999999999999999999999984
No 358
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=56.56 E-value=12 Score=29.34 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=38.5
Q ss_pred HHHHHhcCcCCCCCCCCcCHHHHHHhc-------CCCHHHHHHHHHHHhhCCeEEe-ecCC--------ceeeccCC
Q 024592 205 MVLDFLRRPEFLANNNGVHRNVISQQL-------NLPMDKLMEALESLNENSLVYS-IDEF--------HYKSAVNA 265 (265)
Q Consensus 205 ~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-------~~~~~~v~~al~~L~~eG~IYs-iDd~--------hyk~t~~~ 265 (265)
.||.+|.+. -.+--+|.+.+ +++...|..+|..|.++|.|-+ .++. .|+.|..|
T Consensus 48 ~IL~lL~~~-------p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~G 117 (148)
T 2zfw_A 48 YVLAVLRHE-------DSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQAN 117 (148)
T ss_dssp HHHHHHTTC-------CEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSS
T ss_pred HHHHHHHhC-------CCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHH
Confidence 478888652 23334444433 4899999999999999999988 5431 48888765
No 359
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=56.30 E-value=16 Score=28.54 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=29.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
.|++.++.|+.+.. -+|++..+|++.|++++..|+..+..
T Consensus 140 ~L~~~~r~vl~l~~-------~~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 140 SLPEDLRMAITLRE-------LDGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HSCHHHHHHHHHHH-------TTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHH-------HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35566666665432 24899999999999999998876653
No 360
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=56.25 E-value=14 Score=27.08 Aligned_cols=37 Identities=3% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHHHhc-C-CCHHHHHHHHHHHhhCCeEEe-ecCCcee
Q 024592 224 RNVISQQL-N-LPMDKLMEALESLNENSLVYS-IDEFHYK 260 (265)
Q Consensus 224 ~~~I~~~l-~-~~~~~v~~al~~L~~eG~IYs-iDd~hyk 260 (265)
++.+.+.+ + .+..+-....+.|+++|.|+. .++.+|+
T Consensus 57 VdWL~~~~~~~~~r~eAv~lg~~Ll~~G~I~hv~~~~~F~ 96 (105)
T 1fsh_A 57 VDWLYTHVEGFKERREARKYASSMLKHGFLRHTVNKITFS 96 (105)
T ss_dssp HHHHHHHCCCCSSHHHHHHHHHHHHHTTTEECSSSSCCCC
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHHCCcEEEcCCCCccc
Confidence 45666776 3 688888899999999999999 8888887
No 361
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.65 E-value=17 Score=26.88 Aligned_cols=40 Identities=3% Similarity=0.073 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
.+++.++.|+...-. +|.+..+|++.+++++..|+..+..
T Consensus 22 ~L~~~~r~vl~l~y~-------~g~s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA-------DDYSLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp GSCHHHHHHHHHHHH-------TCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 366777888776432 4899999999999999998876654
No 362
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=55.23 E-value=15 Score=21.90 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=26.1
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
...|+.++. .|.++.+|++.|+++...|...+..
T Consensus 11 ~~~i~~l~~--------~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 11 QEQISRLLE--------KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHHH--------TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHH--------cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345666653 2689999999999999999877654
No 363
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.83 E-value=11 Score=23.38 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHH
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALE 243 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~ 243 (265)
.|.+..+|++.|+++...|...+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 488999999999999999987663
No 364
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=54.35 E-value=18 Score=26.08 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=34.1
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~ 250 (265)
..+..|+.++. .|.++.+|++.|+++...|..-+......|.
T Consensus 21 ~~r~~i~~~~~--------~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~ 62 (128)
T 1pdn_C 21 NIRLKIVEMAA--------DGIRPCVISRQLRVSHGCVSKILNRYQETGS 62 (128)
T ss_dssp HHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCC
Confidence 45666777663 3789999999999999999999998877664
No 365
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=54.17 E-value=11 Score=36.33 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=39.6
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhh-----CCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNE-----NSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~-----eG~IYs 253 (265)
+..+..||.+|++. .-++..+|++.+++++.+++.+|..|.+ .|.|-.
T Consensus 429 ~~~~~~iL~~l~~~------~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~ 481 (583)
T 3lmm_A 429 DYRIAIVLYLLFQR------PFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIA 481 (583)
T ss_dssp CHHHHHHHHHHHHS------SSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEE
T ss_pred chhHHHHHHHHHHC------CCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEE
Confidence 34456799998864 3699999999999999999999999999 556544
No 366
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=54.14 E-value=7.1 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=33.0
Q ss_pred CCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 219 NNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
..=|+...|+++|++..+=-|.+|++|.+.|.|-.+.
T Consensus 57 ~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 57 YRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp CSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEE
T ss_pred CeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEe
Confidence 4578999999999999999999999999999997643
No 367
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=53.95 E-value=21 Score=31.42 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=45.2
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec--CCceeec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID--EFHYKSA 262 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD--d~hyk~t 262 (265)
.++..|+++|.+. ..++++++|+++++.++.-++..|+.|..-|.+-. .+ +..|..|
T Consensus 28 a~eLglfd~L~~~-----~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 87 (353)
T 4a6d_A 28 ACELGVFDLLAEA-----PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRNT 87 (353)
T ss_dssp HHHHTHHHHHHHS-----SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHcCHHHHHhcC-----CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeCC
Confidence 4667789998753 23689999999999999999999999999999854 22 3367654
No 368
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=53.35 E-value=21 Score=30.27 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=35.8
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..|++-+.+||..+. +|.+..||++.|++++..|+.-+..+.
T Consensus 196 ~~Lt~re~~vl~~~~--------~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS--------RGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp CCCCHHHHHHHHHHH--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358889999999984 399999999999999999988777654
No 369
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=52.46 E-value=21 Score=28.69 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALE 243 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~ 243 (265)
..|++.++.|+.+.-- +|++..+|++.|++++..|+..+.
T Consensus 186 ~~L~~~~r~vl~l~~~-------~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-------EELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp TTSCHHHHHHHHHHHT-------SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-------cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4577778888765432 489999999999999999886654
No 370
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=52.19 E-value=72 Score=23.91 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=44.7
Q ss_pred CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEE-eeeeC-CccEEEEEEeeeCCC
Q 024592 83 EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGH-LKAFQ-DKRSLNAYSLRPIID 146 (265)
Q Consensus 83 ~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~-i~~f~-~~~~i~~~~i~~v~d 146 (265)
..+..+.|.||.-.+.+-+......+.-....|+.|+.||+.== +...+ +++.|.+..+..+..
T Consensus 42 ~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~~~k~vliIl~levl~~ 107 (123)
T 2b29_A 42 PPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKS 107 (123)
T ss_dssp CCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECSSSCEEEEEEEEEEEEC
T ss_pred CceEEEEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEecCCcEEEEEEeeEEeec
Confidence 46889999999999998555443332223457899999999533 33445 788888877776654
No 371
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.08 E-value=18 Score=29.17 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=30.5
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCcee
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYK 260 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk 260 (265)
++.++|++.++++.+.|..+|..|.++| | ..+..++.
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i-~~~~~~i~ 215 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V-TVKRNHAE 215 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E-ECCTTEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e-EeeCCEEE
Confidence 4578999999999999999999999999 5 44444443
No 372
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=51.68 E-value=12 Score=30.49 Aligned_cols=32 Identities=3% Similarity=0.161 Sum_probs=29.6
Q ss_pred CcCHHHHHHhcCCCH-HHHHHHHHHHhhCCeEE
Q 024592 221 GVHRNVISQQLNLPM-DKLMEALESLNENSLVY 252 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~-~~v~~al~~L~~eG~IY 252 (265)
-++.++|++.++++. +.|..+|..|.++|.|-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~ 201 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV 201 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE
Confidence 578899999999999 79999999999999984
No 373
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=51.63 E-value=20 Score=30.88 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHH-HHhhCCeEEe
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALE-SLNENSLVYS 253 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~-~L~~eG~IYs 253 (265)
.+..+.++++..+... ....+++.++++.++++...+.+.++ +|++.|.|+.
T Consensus 260 ~l~~~e~~~l~~l~~~----~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~ 312 (338)
T 3pfi_A 260 GFDAMDLRYLELLTAA----KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIER 312 (338)
T ss_dssp CCCHHHHHHHHHHHHS----CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHh----cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceec
Confidence 4556655566655432 23467899999999999999999999 9999999987
No 374
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=51.38 E-value=24 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.|+.-..+||.+|.+ |++.++|++.+++++..|+.-+..|.
T Consensus 149 ~LT~rE~~vL~~l~~--------g~s~~eIa~~l~is~~TV~~hi~~l~ 189 (225)
T 3c3w_A 149 GLTDQERTLLGLLSE--------GLTNKQIADRMFLAEKTVKNYVSRLL 189 (225)
T ss_dssp TSCHHHHHHHHHHHT--------TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--------CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578888899999853 68999999999999998887776654
No 375
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=51.25 E-value=24 Score=29.63 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=34.1
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
..|++-++.|+.++ . +|.+..||++.|++++..|+..+...
T Consensus 196 ~~L~~~erevl~L~-~-------~G~s~~EIA~~L~iS~~TVk~~l~ra 236 (258)
T 3clo_A 196 NILSEREKEILRCI-R-------KGLSSKEIAATLYISVNTVNRHRQNI 236 (258)
T ss_dssp TSSCHHHHHHHHHH-H-------TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-H-------cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46888999999885 2 39999999999999999988776554
No 376
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=51.12 E-value=3.5 Score=33.25 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeE
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLV 251 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~I 251 (265)
-++.++|++.++++.+.|..+|..|.++|.|
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I 194 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYI 194 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeE
Confidence 4788999999999999999999999999987
No 377
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.92 E-value=6.9 Score=34.28 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=34.2
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.=++.+.|++.|+++++++...|..|+.+|.|+- ||.
T Consensus 355 ~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~ 392 (434)
T 4b4t_Q 355 ECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQ 392 (434)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEET
T ss_pred HhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceeccc
Confidence 4578999999999999999999999999999998 885
No 378
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=50.65 E-value=42 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=40.1
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHH-------hc-CCCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQ-------QL-NLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~-------~l-~~~~~~v~~al~~L~~eG~IYs 253 (265)
......|++.+.+.+ ..+.=+++-||.+ .| +++++-+++||.-|+..|..=-
T Consensus 8 eeWa~~Iy~Wv~~~G--~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i 67 (79)
T 3htu_A 8 EEWGKLIYQWVSRSG--QNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEI 67 (79)
T ss_dssp HHHHHHHHHHHHTTC--CSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcC--CCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEE
Confidence 456788999998864 3334468888886 33 5999999999999999986544
No 379
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=50.61 E-value=79 Score=23.91 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred EeEEEEEEEEEEeeeCCCeEEEEEEcC-----CCeEEEEEecccccccccccccCCCCEEEEEEEeeeeCCccEEEEEEe
Q 024592 67 VNTITVVGIVCDMQDKEPQFIFLIDDG-----TGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKAFQDKRSLNAYSL 141 (265)
Q Consensus 67 v~~V~iVG~V~~v~~~~t~~~y~LdDg-----TG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~f~~~~~i~~~~i 141 (265)
..+|++.|+|.+....+..++ |+-. +-...+..|...--+.-.+..+++|.+|-|.|= |+|+ .|.+-.|
T Consensus 23 p~kVR~L~QVisYd~~sa~L~--l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~Gy---ynGe-~i~~i~i 96 (123)
T 3kf8_B 23 PERLRILAQVKDFIPHESTIV--IDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAF---YDGE-SINPVDI 96 (123)
T ss_dssp CEEEEEEEEEEEEEGGGTEEE--EECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEE---ECSS-CEEEEEE
T ss_pred CceEEEEEEEEEEcCCCcEEE--EEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEE---ecCc-cccEEEE
Confidence 378999999999876554433 3222 012336666654222235678899999999995 4555 5666667
Q ss_pred eeCCChhHHHHHHHHHHHH
Q 024592 142 RPIIDFNEITSHFVECIYV 160 (265)
Q Consensus 142 ~~v~d~Nei~~H~Levi~~ 160 (265)
.++. .-+++.-.|+++..
T Consensus 97 ~~vN-gs~~t~eni~~l~~ 114 (123)
T 3kf8_B 97 YEVN-GANFTMENIQLIDE 114 (123)
T ss_dssp EECC-GGGCCHHHHHHHHH
T ss_pred Eeec-ccceeHHHHHHHHH
Confidence 7774 45677777776653
No 380
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=49.62 E-value=25 Score=29.49 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=33.9
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.+..-||+.|.+ ..-++++++++.++.+.++|+++|+.|-
T Consensus 22 ~~~~~llr~la~------Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 22 DLLVPLLRELAK------GRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHHTT------TSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhc------CCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 567778888763 2468999999999999999999999986
No 381
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=49.15 E-value=20 Score=28.65 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=40.8
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-CCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN-LPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-~~~~~v~~al~~L~~eG~IYs 253 (265)
.+...+||.+|.. ...++.+|++.|+ ++...|-.-|..|.+.|.|-.
T Consensus 22 ~P~Rl~il~~L~~-------~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~ 69 (182)
T 4g6q_A 22 HPLRWRITQLLIG-------RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMV 69 (182)
T ss_dssp SHHHHHHHHHTTT-------SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEE
Confidence 4688889999864 3579999999996 999999999999999999965
No 382
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=48.53 E-value=12 Score=25.38 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=37.8
Q ss_pred CChhHHHHHHHhcCcCCCCCCCC-cCHHHHHHhc-C----CCHHHHHHHHHHHhhCC-eEEe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNG-VHRNVISQQL-N----LPMDKLMEALESLNENS-LVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~G-v~~~~I~~~l-~----~~~~~v~~al~~L~~eG-~IYs 253 (265)
+..++..|-++|+.. ...| ++.++|...| . ++.+++.+.++.|.+.| .|+.
T Consensus 4 m~~~~~~~k~Li~~g----K~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd 61 (72)
T 2k6x_A 4 MPQIERRIKKLISLG----KKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVE 61 (72)
T ss_dssp CHHHHHHHHHHHHHH----HHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBC
T ss_pred HHHHHHHHHHHHHHH----hHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCcccc
Confidence 444566666666432 1345 8999999988 2 79999999999999999 5654
No 383
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=48.53 E-value=32 Score=24.42 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=39.4
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-----CCHHHHHHHHHHHhhCCeEE
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLN-----LPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-----~~~~~v~~al~~L~~eG~IY 252 (265)
.|...||+++..- ....-+.-.|+++.++ --++.||.+...|..+|.|-
T Consensus 7 ~le~~Il~ll~~R---~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~~G~v~ 60 (85)
T 2ns0_A 7 ELEECIRALLDAR---ADSASICPSDVARAVAPDDWRPLMEPVREAAGRLADAGEVE 60 (85)
T ss_dssp HHHHHHHHHHHHS---CTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHh---CCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHHCCcEE
Confidence 6888999999874 2334567799999995 45788999999999999874
No 384
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=48.43 E-value=27 Score=27.55 Aligned_cols=41 Identities=10% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.|+....+||.+|.+ |.+.++|++.+++++..|+.-+..|.
T Consensus 154 ~Lt~rE~~vl~~l~~--------g~s~~~Ia~~l~is~~TV~~hi~~i~ 194 (215)
T 1a04_A 154 QLTPRERDILKLIAQ--------GLPNKMIARRLDITESTVKVHVKHML 194 (215)
T ss_dssp GSCHHHHHHHHHHHT--------TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 477888889999864 67899999999999998888777664
No 385
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=48.29 E-value=7.9 Score=28.86 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=36.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC------CCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLN------LPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~------~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
.+.-.||.+|.+. -.|--+|++.+. ++...|..+|..|.++|.|-+ .+
T Consensus 14 ~l~~~IL~lL~~~-------p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~ 68 (117)
T 3elk_A 14 LITLYILKELVKR-------PMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESS 68 (117)
T ss_dssp HHHHHHHHHHHHS-------CEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHcC-------CCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 4667789888642 245556666653 888999999999999999998 54
No 386
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=48.20 E-value=15 Score=28.92 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=36.8
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc---CCCHHHHHHHHHHHhhCCeE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL---NLPMDKLMEALESLNENSLV 251 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l---~~~~~~v~~al~~L~~eG~I 251 (265)
...+....|.+|..- --+..+|.++| +++++.|..+|+.|.+.|.|
T Consensus 16 ~~~a~~~Al~~Ls~r-------~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~l 64 (162)
T 3dfg_A 16 EQTPVQRALGLLVHR-------EHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQ 64 (162)
T ss_dssp -CCHHHHHHHHHHHS-------CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhch-------hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 346777788888642 34788999988 59999999999999999876
No 387
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=48.17 E-value=26 Score=30.39 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=36.2
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCceeec
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVYSIDEFHYKSA 262 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t 262 (265)
.++.++|+++++.++.-++..|+.|...|.+-..+ +.|..|
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~~t 96 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFRNT 96 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-CeeecC
Confidence 78999999999999999999999999999886643 578765
No 388
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=48.03 E-value=21 Score=25.49 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=34.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc----CCCHHHHHHHHHHHhhCCeEEe-ecCCce
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL----NLPMDKLMEALESLNENSLVYS-IDEFHY 259 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l----~~~~~~v~~al~~L~~eG~IYs-iDd~hy 259 (265)
.++..|..++|.... -.+--=+.++++++ ..+...|+++|+.|++.+.|=- -+++.|
T Consensus 23 ~iqAaIVRIMK~rK~--l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~~~y 84 (88)
T 3o2p_E 23 FLEACIVRIMKAKRN--LPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDGESY 84 (88)
T ss_dssp HHHHHHHHHHHHHSE--EEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTSSEE
T ss_pred hhheeeehhhccccc--ccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCCCeE
Confidence 366667777765320 01111123333333 4788899999999999998877 433544
No 389
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=47.94 E-value=18 Score=31.69 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=44.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC---CHHHHHHHHHHHhhCCeEEee-----c-----CCceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNL---PMDKLMEALESLNENSLVYSI-----D-----EFHYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~---~~~~v~~al~~L~~eG~IYsi-----D-----d~hyk~t 262 (265)
++-.|+++|... ...+++++|+++++. .+.-++..|+.|...|.+-.. + +++|+.|
T Consensus 31 ~~lgif~~L~~~-----~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t 99 (358)
T 1zg3_A 31 MELGIADAIHNH-----GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLT 99 (358)
T ss_dssp HHHTHHHHHHHH-----TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEEC
T ss_pred HHCChHhHHhhc-----CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCC
Confidence 556688888652 125899999999998 577899999999999999773 3 4688866
No 390
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=47.90 E-value=27 Score=26.20 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=39.8
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHh--cCCCHHHHHHHHHHHhhCCeEEe-ecCC------ceeeccC
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQ--LNLPMDKLMEALESLNENSLVYS-IDEF------HYKSAVN 264 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~--l~~~~~~v~~al~~L~~eG~IYs-iDd~------hyk~t~~ 264 (265)
+.-.||.+|. .+ -.|..+...++. +++++..|--+|..|.++|.|-+ .++. .|..|..
T Consensus 22 l~~~IL~lL~-~p----~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~ 88 (123)
T 3ri2_A 22 LVMLVLSQLR-EP----AYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDE 88 (123)
T ss_dssp HHHHHHHHTT-SC----EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHH
T ss_pred HHHHHHHHHc-CC----CCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHH
Confidence 5666888886 31 245444333332 47999999999999999999998 5431 5766643
No 391
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=47.78 E-value=62 Score=25.81 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=45.8
Q ss_pred cccceeeeeHHHHhcCCCCCCCCeEECCeEEeEEEEEEEEEEe-eeC-CCeEEEEEEcCCCe-EEEEEeccccccccccc
Q 024592 37 NVRTLLPMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDM-QDK-EPQFIFLIDDGTGR-IECSRWAHEQMEFNEVN 113 (265)
Q Consensus 37 ~~~~~~PvtIkqi~~a~~~~~~~f~i~g~~v~~V~iVG~V~~v-~~~-~t~~~y~LdDgTG~-I~~~~w~~~~~~~~~~~ 113 (265)
...++.+++++.|...-. .-+.++|+|+.. ... .--.+|.+.|..|+ +-+..|.-.+ -.
T Consensus 57 ~~~~l~~~~l~~L~~G~N-------------~g~vv~gKVv~~i~~e~~vP~~f~~vD~~g~c~avsVYNl~~-----~~ 118 (166)
T 2xvs_A 57 QKVTLELKPLSTLQPGVN-------------SGAVILGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQ-----SW 118 (166)
T ss_dssp CEECCEECCGGGCCSEEC-------------TTEEEEEEEEEEECCTTCCSEEEEEESSSSCCEEEEECCCCS-----SC
T ss_pred CcceeeeeeHHHcccccC-------------CCcEEEEEEEEEecCCCCCceEEEEECCCCCEEEEEEEeccC-----Cc
Confidence 467899999999976522 236777887665 333 36799999999997 5555664322 13
Q ss_pred ccCCCCEEEE
Q 024592 114 QISKGMYVRV 123 (265)
Q Consensus 114 ~~~~g~yVrV 123 (265)
.+..||.|-|
T Consensus 119 G~~iGDsV~I 128 (166)
T 2xvs_A 119 GVLIGDSVAI 128 (166)
T ss_dssp CCCTTCEEEE
T ss_pred ceEecCEEEe
Confidence 3666776654
No 392
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=46.84 E-value=32 Score=25.52 Aligned_cols=47 Identities=11% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 204 QMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 204 ~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
..|..+|+.. ..++..++++..++++.+++..+|+.|..+|.|+.++
T Consensus 5 ~~l~~~L~~~-----~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~ 51 (135)
T 2v9v_A 5 KILAQIIQEH-----REGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (135)
T ss_dssp HHHHHHHHHC-----SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHc-----CcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 3455566543 2245559999999999999999999999999999954
No 393
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=46.11 E-value=4.3 Score=38.50 Aligned_cols=60 Identities=13% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCC-eE-Ee-ecCCceeeccCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENS-LV-YS-IDEFHYKSAVNA 265 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG-~I-Ys-iDd~hyk~t~~~ 265 (265)
+++..||..|.+. +..++.+++++.++++.+.|..++..|.+.| .| +. .....|..|..|
T Consensus 5 ~~~~~iL~~l~~~-----~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg 67 (508)
T 3l4g_A 5 QVAELLLRRLEAS-----DGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEG 67 (508)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhc-----CCCcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHH
Confidence 5888999988652 1146789999999999999999999999998 66 44 888888888765
No 394
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.94 E-value=23 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.325 Sum_probs=32.3
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC---CHHH-HHHHHHHHh
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNL---PMDK-LMEALESLN 246 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~---~~~~-v~~al~~L~ 246 (265)
....++|+++|+. +.++..+|++.+++ ++.+ |.+.|+.+.
T Consensus 10 ~T~Re~Ii~lL~~-------~plta~ei~~~l~i~~~~~ke~Vy~hLeHIa 53 (105)
T 2gmg_A 10 ATRREKIIELLLE-------GDYSPSELARILDMRGKGSKKVILEDLKVIS 53 (105)
T ss_dssp HHHHHHHHHHTTT-------SCBCTTHHHHSSCCCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHc-------CCCCHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 3578889999973 47899999999998 8888 777776654
No 395
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=45.87 E-value=21 Score=31.66 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=45.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC--CHH---HHHHHHHHHhhCCeEEe-e----c---CCceeecc
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNL--PMD---KLMEALESLNENSLVYS-I----D---EFHYKSAV 263 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~--~~~---~v~~al~~L~~eG~IYs-i----D---d~hyk~t~ 263 (265)
.++..|++.|.+.+ +..++.++|+++++. ++. -++..|+.|...|.+-. - | +++|..|.
T Consensus 40 a~~Lgifd~L~~~g----~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~ 111 (364)
T 3p9c_A 40 AIELGLLEILVAAG----GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAP 111 (364)
T ss_dssp HHHHTHHHHHHHTT----TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECG
T ss_pred HHHCChHHHHhhcC----CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCH
Confidence 46667899987531 246899999999997 655 79999999999998866 3 1 46788763
No 396
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=45.28 E-value=27 Score=24.08 Aligned_cols=60 Identities=7% Similarity=0.123 Sum_probs=47.7
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC-CHHHHHHHHHHHhhCCeEEeecCCcee
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNL-PMDKLMEALESLNENSLVYSIDEFHYK 260 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~-~~~~v~~al~~L~~eG~IYsiDd~hyk 260 (265)
.+|..+-+++++++++. .+.=+++++++..|+. ....|-+++.=|+.-|.|=-..-++|+
T Consensus 10 ~SL~~lt~kFi~l~~~~----~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~ 70 (76)
T 1cf7_A 10 KSLGLLTTKFVSLLQEA----KDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQ 70 (76)
T ss_dssp TCHHHHHHHHHHHHHHS----STTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEE
T ss_pred CcHHHHHHHHHHHHHhC----CCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEE
Confidence 45667888888888763 2445799999999999 889999999999999988555555554
No 397
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=45.01 E-value=29 Score=25.92 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=37.4
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHH---Hhc--CCCHHHHHHHHHHHhhCCe
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVIS---QQL--NLPMDKLMEALESLNENSL 250 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~---~~l--~~~~~~v~~al~~L~~eG~ 250 (265)
+..+-..|++.||.- =.+||+-.+=+ .-| .++++||.+....|+.+|+
T Consensus 6 ~~~~l~siv~WLRAG----YP~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L~~~~~ 58 (112)
T 2lky_A 6 VNAFLAKIAAWLNAG----YPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEKRAH 58 (112)
T ss_dssp SCHHHHHHHHHHHHH----CSSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHcc----CCCCCCCcchHHHHHHHcccCCHHHHHHHHHHHHHcCC
Confidence 446677799999873 35799887654 344 4999999999999999986
No 398
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=44.57 E-value=33 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.4
Q ss_pred cCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 222 VHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 222 v~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.+.++|+..++.++++|..+|..|-
T Consensus 49 ~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 49 KSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5899999999999999999998764
No 399
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=44.40 E-value=24 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=38.8
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhC
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNEN 248 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~e 248 (265)
.+..|..||-++.+. ....+++++|.+.+++++++++.+|..|+.-
T Consensus 197 vs~~Qa~ILllFn~~----~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 197 VTTFQLAVLFAWNQR----PREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp EEHHHHHHHGGGTTC----TTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred EcHHHHHHHHHhccC----CCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 457899999888652 2358999999999999999999999999864
No 400
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=44.33 E-value=9.3 Score=30.69 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=39.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCC----cCHH-H-HHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 201 SIDQMVLDFLRRPEFLANNNG----VHRN-V-ISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~G----v~~~-~-I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
..+..|+++++.. ... ++.. + ++++++.+..-.+++|+.++.+|.+.-
T Consensus 99 ~~~~~il~~~~~~-----~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~ 152 (169)
T 1u5t_B 99 VVKEKLVDLIGDN-----PGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLI 152 (169)
T ss_dssp HHHHHHHHHHHHS-----CSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHhc-----CCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE
Confidence 3668899998742 123 6788 8 999999999999999999999999875
No 401
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=44.32 E-value=40 Score=24.14 Aligned_cols=41 Identities=5% Similarity=0.058 Sum_probs=30.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
+.-..++++|.+.- ...+++++|++.+++++..+...+...
T Consensus 7 ~~i~~~~~~i~~~~----~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 7 PKLTEAVSLMEANI----EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHHTCS----SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh----cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45566888888752 335999999999998888877766543
No 402
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=43.83 E-value=19 Score=31.46 Aligned_cols=56 Identities=13% Similarity=0.271 Sum_probs=44.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCC---HHHHHHHHHHHhhCCeEEee--cCCceeec
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLP---MDKLMEALESLNENSLVYSI--DEFHYKSA 262 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~---~~~v~~al~~L~~eG~IYsi--Dd~hyk~t 262 (265)
++-.|++.|... ...+++++|+++++.+ +.-++..|+.|...|.+-.. ++++|+.|
T Consensus 37 ~~lgif~~L~~~-----~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t 97 (352)
T 1fp2_A 37 VEMNIPNIIQNH-----GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALT 97 (352)
T ss_dssp HHTTHHHHHHHH-----TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred HHCChhhhhhhc-----CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCC
Confidence 455688888652 1258999999999984 77799999999999998764 46788866
No 403
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=43.55 E-value=44 Score=24.23 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
.+-.+|+++|.+.. ..-+++++|++.+++++..+...+..
T Consensus 7 ~~~~~~~~~i~~~~----~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 7 NMRTRVCTVINNNI----AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CHHHHHHHHHHTST----TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56677899998752 34689999999999999888776654
No 404
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=43.05 E-value=40 Score=26.93 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNE 247 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~ 247 (265)
.|+....+||.++.+ |.+.++|++.+++++..|+.-+..|..
T Consensus 159 ~Lt~rE~~vL~~l~~--------g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 159 KLTKREQQIIKLLGS--------GASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp TSCHHHHHHHHHHTT--------TCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--------CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 478888899999853 789999999999999999988887754
No 405
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=43.05 E-value=31 Score=25.98 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=34.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~ 250 (265)
..+..|+..+. .|.++.+|++.|+++...|..-+......|.
T Consensus 36 e~r~~iv~~~~--------~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~ 77 (149)
T 1k78_A 36 VVRQRIVELAH--------QGVRPCDISRQLRVSHGCVSKILGRYYETGS 77 (149)
T ss_dssp HHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 45666776663 3789999999999999999999998877775
No 406
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=42.87 E-value=19 Score=31.32 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
....|+++|.+. ....+++++|.+..++..++|-.+|+.|
T Consensus 199 W~~~il~~L~~~----~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 199 WKSVILECLYHQ----NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc----CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 567788888752 2457999999999999999999999987
No 407
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=42.67 E-value=50 Score=27.67 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=40.7
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhc--CCC-------HHHHHHHHHHHhhCCeEEe-ec-CCceeec
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQL--NLP-------MDKLMEALESLNENSLVYS-ID-EFHYKSA 262 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--~~~-------~~~v~~al~~L~~eG~IYs-iD-d~hyk~t 262 (265)
.++|++.+++. .+.|.+..+|++.+ .++ +.++..-|++|.++|.|-. .+ +..||+.
T Consensus 222 ~~~i~~~l~~~----~~~~~t~~ei~~~~~~~~p~~l~~~a~~~~~ahL~~L~~~g~v~~~~~~~~~w~~~ 288 (289)
T 4ad9_A 222 EQQILTLFREN----FEKSFTVMELVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFSNTDPDKKWKAH 288 (289)
T ss_dssp HHHHHHHHHHT----TTCCBCHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHHHTTSEEECCCSSCCEEEC
T ss_pred HHHHHHHHHhc----CCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHCCcEEEEeCCCceeecc
Confidence 45577777652 24589999999888 443 4457788999999999977 54 4578763
No 408
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=42.27 E-value=15 Score=32.98 Aligned_cols=44 Identities=5% Similarity=-0.062 Sum_probs=35.4
Q ss_pred HHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 204 QMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 204 ~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+|++.+... .-+.++++++.++.+...++..|..|.+.|.|-.
T Consensus 300 ~~ll~~l~~~------p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 300 HELVQVIFEQ------PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp HHHHHHHHHC------SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHhC------CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE
Confidence 4455555432 2468889999999999999999999999999876
No 409
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=40.94 E-value=44 Score=23.61 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
.-.+|+++|.+.. .+.-+++++|++.+++++..+...+...
T Consensus 4 ~i~~~~~~i~~~~---~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 4 RVREACQYISDHL---ADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHTS---SCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---ccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3356778887642 2257899999999988888777666543
No 410
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.86 E-value=19 Score=28.88 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=35.0
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc---CCCHHHHHHHHHHHhhCCeE
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL---NLPMDKLMEALESLNENSLV 251 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l---~~~~~~v~~al~~L~~eG~I 251 (265)
......|.+|..- --+..+|.++| +++++.|..+|+.|.+.|.|
T Consensus 19 ~a~~~Al~~Ls~r-------~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~l 65 (177)
T 3e3v_A 19 KGYNAALNYLSYQ-------LRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLI 65 (177)
T ss_dssp HHHHHHHHHHHSS-------CCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccc-------cccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence 4555566777542 35889999998 59999999999999998875
No 411
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=40.70 E-value=35 Score=25.09 Aligned_cols=40 Identities=8% Similarity=-0.092 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENS 249 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG 249 (265)
....|+.+++ .|.+..+|++.|+++...|...+......|
T Consensus 11 ~r~~i~~~~~--------~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g 50 (141)
T 1u78_A 11 ERAQLDVMKL--------LNVSLHEMSRKISRSRHCIRVYLKDPVSYG 50 (141)
T ss_dssp HHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHSGGGTT
T ss_pred HHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHcccccC
Confidence 4455666553 388999999999999999999988766655
No 412
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=39.51 E-value=54 Score=23.59 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=33.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHHHhh
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALESLNE 247 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~L~~ 247 (265)
+..+.||...++.+ . .--+...|+++| +-++++|.+-.+.|+.
T Consensus 39 e~DR~IL~~cQ~~G--~--s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 39 EADRVILTMCQEQG--A--QPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHHHHHTT--S--CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcC--C--ChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 46677888887743 1 123778899999 5999999999999985
No 413
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=38.96 E-value=34 Score=24.26 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=28.7
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
+-.+|+++|.+.. ...+++++|++.+++++..+...+...
T Consensus 3 ~i~~~~~~i~~~~----~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANW----MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHT----TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc----cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456777887642 235899999999998888777666543
No 414
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=38.72 E-value=37 Score=33.56 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=42.1
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEE
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVY 252 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IY 252 (265)
.+..|..||-++.+. ..+++++|++.+++++++++.+|..|+..+.|-
T Consensus 587 vs~~Qa~iLllFn~~------~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 587 ASTFQMAILLQYNTE------DAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV 634 (760)
T ss_dssp CCHHHHHHHHGGGSS------SEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE
T ss_pred EcHHHHHHHHHhcCC------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcce
Confidence 567899999888752 479999999999999999999999999888775
No 415
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=38.70 E-value=73 Score=20.12 Aligned_cols=50 Identities=8% Similarity=-0.021 Sum_probs=33.0
Q ss_pred EEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEE
Q 024592 71 TVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVY 124 (265)
Q Consensus 71 ~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~ 124 (265)
.+-|+|.+++.........|+-+-+.+.+..=.... ....+++|+-|.+.
T Consensus 8 ~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~----~~l~L~~G~~V~~~ 57 (67)
T 1fr3_A 8 KLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSV----ADLDLVPGDKVTAL 57 (67)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHH----HHHTCCTTCEEEEE
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHH----HhCCCCCCCEEEEE
Confidence 478999999888777777776444456555432211 23468899988765
No 416
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=38.03 E-value=26 Score=24.23 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=19.8
Q ss_pred cCCCHHHHHHHHHHHhhCCeEEe
Q 024592 231 LNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 231 l~~~~~~v~~al~~L~~eG~IYs 253 (265)
|..+...|+++|+.|++.+.|=-
T Consensus 43 F~p~~~~IKk~IE~LIereYl~R 65 (77)
T 3tdu_C 43 FKPRVPVIKKCIDILIEKEYLER 65 (77)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhhhHhhc
Confidence 34777899999999999998866
No 417
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=37.98 E-value=20 Score=26.34 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 228 SQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 228 ~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+.|++++....++++.|.++|.|--
T Consensus 23 ~e~l~Ise~~~~~il~~L~d~GyI~G 48 (102)
T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYIIG 48 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEEC
T ss_pred HHhcCCCHHHHHHHHHHHHHCCCccc
Confidence 57789999999999999999999965
No 418
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=37.88 E-value=26 Score=30.91 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=43.6
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC------CHHHHHHHHHHHhhCCeEEee----c----CCceeecc
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNL------PMDKLMEALESLNENSLVYSI----D----EFHYKSAV 263 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~------~~~~v~~al~~L~~eG~IYsi----D----d~hyk~t~ 263 (265)
++-.|++.|...+ .+...+++++|+++++. .+.-++..|+.|...|.+-.. . +++|+.|.
T Consensus 45 ~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~ 118 (372)
T 1fp1_D 45 IDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM 118 (372)
T ss_dssp HHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred HHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCH
Confidence 4555788886521 01112999999999998 677799999999999998763 2 35888763
No 419
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=37.86 E-value=34 Score=27.10 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC---CCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN---LPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~---~~~~~v~~al~~L~ 246 (265)
.|+....+||.+|.+. ....++.++|++.+. +++..|+..+..|.
T Consensus 145 ~Lt~rE~~vl~~l~~~----~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~ 192 (220)
T 1p2f_A 145 HLPKKEFEILLFLAEN----AGKVVTREKLLETFWEDPVSPRVVDTVIKRIR 192 (220)
T ss_dssp CCCHHHHHHHHHHHHT----TTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHC----CCceEcHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 4788889999998763 245799999999998 89888887776664
No 420
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=37.59 E-value=56 Score=25.41 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.++....+||.++.+ |.+..+|++.+++++..|+.-+..|.
T Consensus 142 ~Lt~rE~~vl~~l~~--------g~s~~~Ia~~l~is~~TV~~~~~~i~ 182 (208)
T 1yio_A 142 SLTGREQQVLQLTIR--------GLMNKQIAGELGIAEVTVKVHRHNIM 182 (208)
T ss_dssp TSCHHHHHHHHHHTT--------TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHc--------CCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467788889998843 67899999999999998876665553
No 421
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=37.32 E-value=6.2 Score=29.42 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=31.9
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEeec
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSLVYSID 255 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiD 255 (265)
.=|+...|+++|++..+=-|.+|++|.+.|.|-.+.
T Consensus 59 KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 59 KQITPSVLSERLRINGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEC
T ss_pred eEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEe
Confidence 367899999999999999999999999999986643
No 422
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=36.89 E-value=82 Score=23.81 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=30.2
Q ss_pred ChhHHHHHHHhcCcCCCCCCCC---cCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 200 KSIDQMVLDFLRRPEFLANNNG---VHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~G---v~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
+...+.|..+|=.. -.+.| .+.++|++.++.++++|..+|..+-
T Consensus 18 ~~~~~~ia~~iI~~---LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ 64 (130)
T 2k9m_A 18 EGKEQELALELLNY---LNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 64 (130)
T ss_dssp CSHHHHHHHHHTTS---BCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh---cCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 34455566654432 23455 5789999999999999998887664
No 423
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=36.55 E-value=28 Score=29.14 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCCcCHHHHHHhcCCCHHHHHHHHHHHhh
Q 024592 219 NNGVHRNVISQQLNLPMDKLMEALESLNE 247 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~~~~~~v~~al~~L~~ 247 (265)
.+.+++++|++.++.+..+|+++|+.|..
T Consensus 28 ~epvs~~~La~~l~~~~~~v~~~l~~L~~ 56 (219)
T 2z99_A 28 DTPVTADALAAATEQPVYRVAAKLQLMAD 56 (219)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34699999999999999999999999975
No 424
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=36.28 E-value=32 Score=26.13 Aligned_cols=27 Identities=7% Similarity=0.329 Sum_probs=24.7
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhh
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNE 247 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~ 247 (265)
|.++.++++++++++..|++++...-.
T Consensus 92 G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999987654
No 425
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=35.73 E-value=1.5e+02 Score=27.65 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=29.5
Q ss_pred EEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEEeee
Q 024592 87 IFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGHLKA 129 (265)
Q Consensus 87 ~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~~ 129 (265)
.+.|+|.||+|.+.-.. +...+..|..|-|.|+...
T Consensus 139 ~l~LEDesGRv~L~g~~-------~~~~lVTG~VvaV~G~~~~ 174 (476)
T 3e0j_A 139 ELVLEDELQRIKLKGTI-------DVSKLVTGTVLAVFGSVRD 174 (476)
T ss_dssp EEEEECSSCEEEEEESC-------CTTTCCTTCEEEEEEEECT
T ss_pred eEEEECCCCEEEEEEEc-------ccccccCCcEEEEEEEEcC
Confidence 69999999999988621 2467899999999999764
No 426
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=35.54 E-value=30 Score=28.62 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=37.2
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc---CCCHHHHHHHHHHHhhCCeEEeecCCce
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL---NLPMDKLMEALESLNENSLVYSIDEFHY 259 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l---~~~~~~v~~al~~L~~eG~IYsiDd~hy 259 (265)
.+....|.+|.. .--+..++.++| +++++.|..+|+.|.+.|.| ||.-|
T Consensus 62 ~a~~~Al~~Ls~-------r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~l---dD~rf 113 (221)
T 3d5l_A 62 KAYSRMLDYLSY-------QMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLI---DDHAY 113 (221)
T ss_dssp HHHHHHHHHHTT-------SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHH
T ss_pred HHHHHHHHHhcc-------ccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC---CHHHH
Confidence 455556777754 245889999988 59999999999999999876 55444
No 427
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=35.50 E-value=1.3e+02 Score=28.07 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=40.0
Q ss_pred eEEEEEEEEEEeeeC-CCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEEEEEE
Q 024592 68 NTITVVGIVCDMQDK-EPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVRVYGH 126 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~-~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~ 126 (265)
..+.||++|+.+-.. ...+.+.|-|||+.-....+..- ..+.+++|++++|...
T Consensus 222 ~f~DLv~qVv~~~~~d~~~~~L~VwDgT~~~~~~~~~~~-----~fP~~~~G~Vlri~~~ 276 (495)
T 1jb7_A 222 GDFDVVAKILQVHELDEYTNELKLKDASGQVFYTLSLKL-----KFPHVRTGEVVRIRSA 276 (495)
T ss_dssp SCEEEEEEEEEEEECSSSEEEEEEEETTCCEEEEEEETT-----TCTTCCTTCEEEEEEE
T ss_pred CceeEEEEEeEEeccCCCeEEEEEEeCCCCCcceeeccc-----cCCceeeEEEEEEecC
Confidence 458899999998654 57899999999997554433332 2466788999998876
No 428
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=35.38 E-value=34 Score=24.32 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=39.7
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc----CCC---HHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL----NLP---MDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l----~~~---~~~v~~al~~L~~eG~IYs 253 (265)
....++|++.|... ....|.+...|..-+ ..+ ...++.+|..|++.|.+-.
T Consensus 8 P~y~~MI~eAI~~l---ker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q 65 (90)
T 1hst_A 8 PTYSEMIAAAIRAE---KSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQ 65 (90)
T ss_dssp CCHHHHHHHHHHTC---CCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeee
Confidence 35788999999886 446799999997655 232 2348999999999999876
No 429
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=35.26 E-value=28 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHhhCCeEEe-ecC-------CceeeccC
Q 024592 232 NLPMDKLMEALESLNENSLVYS-IDE-------FHYKSAVN 264 (265)
Q Consensus 232 ~~~~~~v~~al~~L~~eG~IYs-iDd-------~hyk~t~~ 264 (265)
+++...|..+|..|.++|.|-. .++ -.|..|..
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA 74 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence 5899999999999999999998 443 14777653
No 430
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=35.12 E-value=32 Score=25.63 Aligned_cols=30 Identities=0% Similarity=0.011 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHhhCCeEEe---ecCCceee
Q 024592 232 NLPMDKLMEALESLNENSLVYS---IDEFHYKS 261 (265)
Q Consensus 232 ~~~~~~v~~al~~L~~eG~IYs---iDd~hyk~ 261 (265)
-++.++|.+-+++|++.|.+-. .|+.||+.
T Consensus 21 ~lt~eqI~kQV~Yll~qGw~p~iEf~d~~~~~~ 53 (110)
T 1svd_M 21 PMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMN 53 (110)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTC
T ss_pred CCCHHHHHHHHHHHHHCCCeeEEEeccCCccCC
Confidence 3899999999999999999987 56667753
No 431
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=34.71 E-value=49 Score=19.48 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCHHH-HHHHHHHHhh
Q 024592 224 RNVISQQLNLPMDK-LMEALESLNE 247 (265)
Q Consensus 224 ~~~I~~~l~~~~~~-v~~al~~L~~ 247 (265)
++++++..+.+.++ |++||+....
T Consensus 17 Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 17 LEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34556666777777 7778876654
No 432
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=34.67 E-value=44 Score=24.03 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=40.8
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCc-CHHHHHHhc--CCCHHHHHHHHHHHhhCCeEEe-ecCC--ceeeccC
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGV-HRNVISQQL--NLPMDKLMEALESLNENSLVYS-IDEF--HYKSAVN 264 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv-~~~~I~~~l--~~~~~~v~~al~~L~~eG~IYs-iDd~--hyk~t~~ 264 (265)
..+.-.||.+|.... ..-.|. -+++|.+.+ .+++..|--+|..|.++|.|-+ -+.. .|..|..
T Consensus 8 ~~~~~~IL~lL~~~~--~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~ 76 (99)
T 2co5_A 8 RINYYIILKVLVING--SRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEK 76 (99)
T ss_dssp HHHHHHHHHHHHHTT--TEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHH
T ss_pred cccHHHHHHHHHhcC--CCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHH
Confidence 344556888775321 111232 336666666 4899999999999999999988 5322 5776653
No 433
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=34.58 E-value=47 Score=23.50 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
.+-..|+++|.+.. .+.+++++|++.+++++..+...+...
T Consensus 5 ~~i~~~~~~i~~~~----~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 5 PIIQNVLSYITEHF----SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CHHHHHHHHHHHHT----TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556788887752 236899999999988887777666543
No 434
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=34.33 E-value=39 Score=30.05 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=30.6
Q ss_pred C-cCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 221 G-VHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 221 G-v~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
| -++++|.+.+.+++++|.++++.|.++|.+..
T Consensus 50 G~~tl~ei~~~l~~~~~~v~~~i~~L~~~g~l~~ 83 (353)
T 3h5n_A 50 TPSSYTAALETANIPEKDFSNCFRFLKENFFIIP 83 (353)
T ss_dssp SCBCHHHHHTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHHCCCEee
Confidence 6 69999999999999999999999999998874
No 435
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=33.97 E-value=68 Score=22.85 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=39.7
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--CCC--------HHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL--NLP--------MDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--~~~--------~~~v~~al~~L~~eG~IYs 253 (265)
....++|++.|... ....|.+...|..-+ ++. ...++.+|..|++.|.+-.
T Consensus 8 P~y~~MI~eAI~al---ker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq 68 (93)
T 1ust_A 8 KSYRELIIEGLTAL---KERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQ 68 (93)
T ss_dssp CCHHHHHHHHHTTT---TTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEEC
T ss_pred CCHHHHHHHHHHHc---ccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEe
Confidence 35788999999886 446799999997755 232 2348999999999999876
No 436
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=33.81 E-value=51 Score=24.26 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=30.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
.+-.+|+++|.+.. ...+++++|++.+++++..+...+...
T Consensus 11 ~~i~~~~~~i~~~~----~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 11 ITIHSILDWIEDNL----ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHTTT----TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc----CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45567888888752 234899999999998888777666543
No 437
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=33.69 E-value=28 Score=30.11 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=33.2
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
=....|+++|.+. ...+++++|.+..++..++|-.+|+.|
T Consensus 193 YW~~~i~~~L~~~-----~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 193 YWSDTLITLLVEH-----QKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHHHT-----CSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-----CCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3677889988764 347999999999999999988888776
No 438
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=33.36 E-value=30 Score=25.72 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHhhCCeEEe---ecCCceee
Q 024592 232 NLPMDKLMEALESLNENSLVYS---IDEFHYKS 261 (265)
Q Consensus 232 ~~~~~~v~~al~~L~~eG~IYs---iDd~hyk~ 261 (265)
-++.++|.+-+++|++.|.+-. .|+.||+.
T Consensus 19 ~lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~~~ 51 (109)
T 1rbl_M 19 PLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEE 51 (109)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeccCccccc
Confidence 3899999999999999999987 56667753
No 439
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=33.27 E-value=63 Score=22.38 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENS 249 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG 249 (265)
..+..++..+.. ..|.++.+|++.++++...|..-+......|
T Consensus 9 e~k~~~v~~~~~------~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 9 EFKRDAVALYEN------SDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHHHTT------GGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHH------cCCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 345556655532 1288999999999999999999887766544
No 440
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=33.26 E-value=1.2e+02 Score=21.11 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=44.1
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCC--eEEEEEecccccccccccccCCCCEEEEEEEee-eeCCccEEE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTG--RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK-AFQDKRSLN 137 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG--~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~-~f~~~~~i~ 137 (265)
....+++.|+++.....++.+.|.|.+- .+.+..|.+-.. +..+.+..+.+.-..--+| .|+++.++.
T Consensus 13 qylsvlaqvvdiqssdknirlkicdnscnqelkvvifpdlcy--ewrdkfsinkwyyfnefvrqiyndevqlk 83 (109)
T 3u4z_A 13 QYLSVLAQVVDIQSSDKNIRLKICDNSCNQELKVVIFPDLCY--EWRDKFSINKWYYFNEFVRQIYNDEVQLK 83 (109)
T ss_dssp SEEEEEEEEEEEECCSSCEEEEEECSSCSSCEEEEECTTHHH--HHTTTCCTTCEEEEEEEEEEESSSCEEEE
T ss_pred HHHHHHHHHhhhhcCCCceEEEeecccccceeEEEEchhHHH--HHHhhcchhhhhhHHHHHHHHhhhHHhHh
Confidence 3568899999999999999999999874 588888866432 1233455555443333333 245554443
No 441
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=32.82 E-value=87 Score=26.46 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=41.3
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhc---CCCHHHHHHHHHHHhhCCeEEeecCCceeecc
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQL---NLPMDKLMEALESLNENSLVYSIDEFHYKSAV 263 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l---~~~~~~v~~al~~L~~eG~IYsiDd~hyk~t~ 263 (265)
-+..|+.++-.. ...-+++..+++-+ ++++.-||.+|..|..+|.|-+... -|..|.
T Consensus 5 arSlIlsll~g~----~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~-GY~LT~ 64 (247)
T 3kfw_X 5 ARSVVLSVLLGA----HPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSAD-GYRLSD 64 (247)
T ss_dssp HHHHHHHHHTTT----TTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETT-EEEECH
T ss_pred CceeeEeeecCC----CCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCC-ceeeCH
Confidence 456788876332 13458888887655 7999999999999999999977222 266653
No 442
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=32.80 E-value=1.5e+02 Score=21.79 Aligned_cols=79 Identities=15% Similarity=0.338 Sum_probs=48.7
Q ss_pred eeeHHHHhcCCCCCCCCeEECCeEEeEEEEEEEEEEeeeCCCeEEEEEEcCCCeEEEEEecccccccccccccCCCCEEE
Q 024592 43 PMTVKQLSELSSNDESSASIDGADVNTITVVGIVCDMQDKEPQFIFLIDDGTGRIECSRWAHEQMEFNEVNQISKGMYVR 122 (265)
Q Consensus 43 PvtIkqi~~a~~~~~~~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~LdDgTG~I~~~~w~~~~~~~~~~~~~~~g~yVr 122 (265)
-+.++||-..... ..|++.|.|.+.. .-.++|++.--++.|- .+--- +.. .++.|.+|-
T Consensus 9 L~~Ls~lp~~~~G------------~KVRFLGCV~sY~----tg~L~Le~~~~~v~VD--V~lvL--~~l-~~~vGeWvN 67 (105)
T 3kf6_B 9 LIFINQINDCKDG------------QKLRFLGCVQSYK----NGILRLIDGSSSVTCD--VTVVL--PDV-SIQKHEWLN 67 (105)
T ss_dssp ECCGGGGGGSCTT------------CEEEEEEEEEEEE----TTEEEEEETTEEEEEE--CTTSC--CSS-CCCTTCEEE
T ss_pred EeehhhccCCCCC------------CEEEEEEEeeeec----cEEEEEccCCcEEEEE--HHHhh--chh-eeecccEEE
Confidence 3557777665332 5799999999987 3344555432223222 11111 112 789999999
Q ss_pred EEEEeeeeCCccEEEEEEeeeCC
Q 024592 123 VYGHLKAFQDKRSLNAYSLRPII 145 (265)
Q Consensus 123 V~G~i~~f~~~~~i~~~~i~~v~ 145 (265)
|+|-++.- ..+.|.-+.+.-
T Consensus 68 VvGYir~~---v~VqAl~lwsAG 87 (105)
T 3kf6_B 68 IVGRKRQD---GIVDVLLIRSAV 87 (105)
T ss_dssp EEEEEEET---TEEEEEEEEECT
T ss_pred EEEEEecC---cEEEEEEEeecC
Confidence 99999983 566666555533
No 443
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=32.71 E-value=57 Score=26.19 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESL 245 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L 245 (265)
.|++...+||.+|.+. ....++.++|++++ .+++..|+.-+..|
T Consensus 153 ~LT~rE~~vL~~l~~~----~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~l 201 (238)
T 2gwr_A 153 SLTPLEFDLLVALARK----PRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRL 201 (238)
T ss_dssp CCCHHHHHHHHHHHHS----TTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHC----CCceecHHHHHHHHcCCCCCCCcccHHHHHHHH
Confidence 4888899999998763 24579999999999 67777766655544
No 444
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=32.67 E-value=31 Score=26.03 Aligned_cols=30 Identities=3% Similarity=-0.033 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHhhCCeEEe---ecCCceee
Q 024592 232 NLPMDKLMEALESLNENSLVYS---IDEFHYKS 261 (265)
Q Consensus 232 ~~~~~~v~~al~~L~~eG~IYs---iDd~hyk~ 261 (265)
.++.++|.+-+++|++.|.+-. .|+.||+.
T Consensus 18 ~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~ 50 (118)
T 3zxw_B 18 PLSDAQIARQIQYAIDQGYHPCVEFNETSNAEI 50 (118)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTC
T ss_pred CCCHHHHHHHHHHHHhCCCeeEEEeccCCCccc
Confidence 3889999999999999999876 67777754
No 445
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=32.52 E-value=88 Score=26.47 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHH----HHhhC--CeEEeecCC
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALE----SLNEN--SLVYSIDEF 257 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~----~L~~e--G~IYsiDd~ 257 (265)
.|++.++.|+.+-. -+|.+..+|++.+++++..|+..+. .|... ..|.-+||+
T Consensus 111 ~Lp~~~R~v~~L~~-------~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~rILvVdD~ 169 (286)
T 3n0r_A 111 RIAPRSRQAFLLTA-------LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDE 169 (286)
T ss_dssp HHSCHHHHHHHHHH-------TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCCEEEEECCS
T ss_pred hCCHHHeeEEEEEe-------eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCCcEEEEcCC
Confidence 35667777775443 2599999999999999988876554 44433 355557765
No 446
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=32.37 E-value=63 Score=22.15 Aligned_cols=38 Identities=8% Similarity=0.187 Sum_probs=28.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
..+..+++.+. .|.++.+|++.|+++...|+.-+....
T Consensus 26 e~k~~~v~~~~--------~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 26 RDKIHAIQRIH--------DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HHHHHHHHHHH--------HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34556666552 268999999999999999988876543
No 447
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=32.10 E-value=43 Score=26.59 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=35.3
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~ 246 (265)
.|+.-..+||.+|.+. ...+++.++|++++ ..++..|+..+..|.
T Consensus 156 ~Lt~rE~~vL~~l~~~----~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~ 205 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRN----SGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLR 205 (230)
T ss_dssp CCCHHHHHHHHHHHHT----TTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhC----CCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 5888899999998763 35689999999999 677777776666554
No 448
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=31.87 E-value=48 Score=22.69 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.9
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--CCC--------HHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL--NLP--------MDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--~~~--------~~~v~~al~~L~~eG~IYs 253 (265)
....++|++.|... ....|.+...|.+-+ ++. ...++.+|..|++.|.+-.
T Consensus 5 P~y~~MI~eAI~~l---ker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q 65 (78)
T 1uhm_A 5 KSYRELIIEGLTAL---KERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQ 65 (78)
T ss_dssp CCHHHHHHHHHHHH---CCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEEC
T ss_pred CCHHHHHHHHHHHh---ccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEe
Confidence 35788899988875 346799999998766 332 2348999999999998865
No 449
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=31.42 E-value=45 Score=28.94 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCcCCC-CCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 202 IDQMVLDFLRRPEFL-ANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~-~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
....|+++|.+.... ....-+++++|.+..++..++|-.+|+.|-
T Consensus 192 W~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 192 WSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp HHHHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 667889988764210 012369999999999999999988888763
No 450
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=31.17 E-value=37 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.0
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
....|+++|++. ..-+++++|.+..++..++|-.+|+.|
T Consensus 194 W~~~il~~L~~~-----~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 194 WSWVLLENLRDF-----RGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHHHTC------------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-----CCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 567788998763 236999999999999999988888776
No 451
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=30.98 E-value=49 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.|.+..+|++.++.+...|...-+.|.
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 489999999999999998877766664
No 452
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=30.58 E-value=50 Score=23.58 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC--CC--H----HHHHHHHHHHhhCCeE
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN--LP--M----DKLMEALESLNENSLV 251 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~--~~--~----~~v~~al~~L~~eG~I 251 (265)
.|+..-..|++.+-. .-++.+|++.|. |+ . .+|..-|+.|.+.|.|
T Consensus 40 ~Ln~~a~~Iw~l~DG--------~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I 93 (95)
T 3g2b_A 40 ELDDIALVVAQRYDG--------TQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLL 93 (95)
T ss_dssp CCCTHHHHHHHHCCS--------SSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ecCHHHHHHHHHccC--------CCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCE
Confidence 477888889988742 458999987772 44 2 4677788888888876
No 453
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=30.54 E-value=1.6e+02 Score=21.63 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=35.9
Q ss_pred EeEEEEEEEEEEeeeCCCeEEEEEEcCCCe----------------EEEEEecccccccccccccCCCCEEEEEEE
Q 024592 67 VNTITVVGIVCDMQDKEPQFIFLIDDGTGR----------------IECSRWAHEQMEFNEVNQISKGMYVRVYGH 126 (265)
Q Consensus 67 v~~V~iVG~V~~v~~~~t~~~y~LdDgTG~----------------I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~ 126 (265)
...+.+.|.|+..+.. ..|.++|.|-. ..-+.|.+-. +......++.|+.|||+=.
T Consensus 11 ~~~~t~EGYII~k~~n---~vyfi~dktf~~~elqn~seqql~~e~~s~ivll~~~-~~d~~~~lK~GdKIKVW~s 82 (108)
T 2jqo_A 11 TKMQSLVGYVVLKDNE---RAILITDTKAPGKEDYNLSEGQLMNKFKNNIVIVGLS-EIDNTDDLKRGEKIKVWFH 82 (108)
T ss_dssp SCCEEEEEEEEEECSS---EEEEECSSCCCCTTGGGSCHHHHHHHSTTTEEEEECT-TCTTGGGCCTTEEEEEEEE
T ss_pred cccccceEEEEEecCC---EEEEEcCCCcchHHHHHHHHHHHHhhCCCcEEEEecc-ccccccccCCCCEEEEEeh
Confidence 6788999999887653 78899998820 0011221100 0012467999999999876
No 454
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.19 E-value=15 Score=28.58 Aligned_cols=40 Identities=5% Similarity=0.130 Sum_probs=30.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
.|++.++.|+.+.. -+|.+..||++.|++++..|+..+..
T Consensus 135 ~L~~~~r~vl~l~~-------~~g~s~~eIA~~lgis~~tV~~~l~r 174 (184)
T 2q1z_A 135 RLPEAQRALIERAF-------FGDLTHRELAAETGLPLGTIKSRIRL 174 (184)
T ss_dssp TSCHHHHHHHHHHH-------HSCCSSCCSTTTCCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46667777775432 14889999999999999998877654
No 455
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=30.11 E-value=86 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=27.9
Q ss_pred EeEEEEEEEEEEeeeCC------CeEEEEEEcCCCeEEEEEec
Q 024592 67 VNTITVVGIVCDMQDKE------PQFIFLIDDGTGRIECSRWA 103 (265)
Q Consensus 67 v~~V~iVG~V~~v~~~~------t~~~y~LdDgTG~I~~~~w~ 103 (265)
+..++|=|.|+.+...- =.+.-.|+|||+.++|.+-.
T Consensus 37 ~~~~kVKafI~tl~~~l~~~~~~W~l~a~IsDGS~~LdV~f~~ 79 (157)
T 3mxn_A 37 VTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAYLDVDFVD 79 (157)
T ss_dssp CEEEEEEEEEEEECSCCBCGGGSCBCEEEEECSSCEEEEEECH
T ss_pred ceEEEEEEEEEEeccceeecCCEEEEEEEEeCCceeEEEEeeH
Confidence 46688888888875321 26888999999999998643
No 456
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=29.76 E-value=37 Score=24.93 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=35.3
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHH---Hhc--CCCHHHHHHHHHHHhhCCe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVIS---QQL--NLPMDKLMEALESLNENSL 250 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~---~~l--~~~~~~v~~al~~L~~eG~ 250 (265)
...-..|++.||.- =.+||+-.+=. .-| .++++||.+....|+.+|.
T Consensus 5 ~~~l~siv~WLRaG----YP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~~~~ 56 (103)
T 2kvc_A 5 NRFLTSIVAWLRAG----YPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD 56 (103)
T ss_dssp HHHHHHHHHHHHHH----CTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHcc----CCCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHHcCC
Confidence 34556788899863 35699886643 333 4999999999999999886
No 457
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=29.70 E-value=56 Score=30.03 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhCCeEEeecCCc---ee
Q 024592 224 RNVISQQLNLPMDKLMEALESLNENSLVYSIDEFH---YK 260 (265)
Q Consensus 224 ~~~I~~~l~~~~~~v~~al~~L~~eG~IYsiDd~h---yk 260 (265)
|+.+.+.+.++..|-...-..|++.|.||.+.|.| ||
T Consensus 58 V~WL~~~~~~~~~EA~~lg~~L~~~Gyi~~v~d~~~~~fk 97 (424)
T 2pbi_A 58 LQWITQRLWISNLEAQNLGNFIVKYGYIYPLQDPKNLILK 97 (424)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEESSSTTCCSCC
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHCCCEEeCCcccccccc
Confidence 45566666777766667778899999999966666 66
No 458
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=29.04 E-value=56 Score=20.55 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=25.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcC----HHHHHHhcCCCHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVH----RNVISQQLNLPMDKLMEALE 243 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~----~~~I~~~l~~~~~~v~~al~ 243 (265)
..+..|++++.. |.+ +.+|++.++++...|+.-+.
T Consensus 9 efK~~~~~~~~~--------g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 9 HFKLQVLESYRN--------DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHHHHHH--------CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHc--------CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456666666642 445 99999999999988876554
No 459
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=29.01 E-value=79 Score=22.19 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=39.0
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--CCC---------HHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQL--NLP---------MDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--~~~---------~~~v~~al~~L~~eG~IYs 253 (265)
....++|++.|... ....|.++..|.+-+ ++. ...++.+|..|++.|.+-.
T Consensus 8 P~y~~MI~eAI~al---ker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq 69 (88)
T 1uss_A 8 LTYKEMILKSMPQL---NDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQ 69 (88)
T ss_dssp CCHHHHHHHHHHHS---CCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEEC
T ss_pred CCHHHHHHHHHHHh---ccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEe
Confidence 35788999999875 446799999998755 232 2348999999999998865
No 460
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=29.01 E-value=62 Score=22.21 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCcCHHHHHHhcC-----------CCHHHHHHHHHHHhhCCeEEeecCCceee
Q 024592 220 NGVHRNVISQQLN-----------LPMDKLMEALESLNENSLVYSIDEFHYKS 261 (265)
Q Consensus 220 ~Gv~~~~I~~~l~-----------~~~~~v~~al~~L~~eG~IYsiDd~hyk~ 261 (265)
..++.+.|...|+ ++.++++.-|+.|++||.+--++..-||.
T Consensus 21 ~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~gG~YkL 73 (74)
T 1ldd_A 21 GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIANGSYEI 73 (74)
T ss_dssp CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCTTTEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeCCCEEeC
Confidence 3677777776552 35599999999999999886566667764
No 461
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=28.96 E-value=89 Score=22.88 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=42.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
.++..|++..+.+ ..+-+++.++.+.+.-+...|..+..||..=|.|=- +|
T Consensus 51 ~iRN~iI~~yr~n----P~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN~~v~ 102 (104)
T 2fq3_A 51 RYRNFMVNSYRLN----PNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVD 102 (104)
T ss_dssp HHHHHHHHHHHHC----TTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSSSCC-
T ss_pred HHHHHHHHHHHhC----CceeeeHHHHHHHccccHHHHHHHHHHHHHcCeeccCCC
Confidence 5788888888874 356899999999997799999999999999998844 44
No 462
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=28.95 E-value=47 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.7
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHH
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLM 239 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~ 239 (265)
.......||+++++++ =-+-++|+++|+++.++|.
T Consensus 181 idekeerileilrenp------wtphdeiarrlglsvseve 215 (380)
T 3m6z_A 181 IDEKEERILEILRENP------WTPHDEIARRLGLSVSEVE 215 (380)
T ss_dssp CCHHHHHHHHHHHHCT------TCCHHHHHHHHTCCHHHHH
T ss_pred CChHHHHHHHHHhcCC------CCChHHHHHHhCCchhhhc
Confidence 4567788999999863 3477999999999998875
No 463
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.68 E-value=49 Score=25.74 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=35.3
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-C------------CCHHHHHHHHHHHhhCCeEEeecCCce
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-N------------LPMDKLMEALESLNENSLVYSIDEFHY 259 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~------------~~~~~v~~al~~L~~eG~IYsiDd~hy 259 (265)
.+....|.+|.. .--+..+|.++| . ++++.|..+|+.|.+.|.| ||..|
T Consensus 6 ~a~~~Al~~Ls~-------r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~l---dD~rf 67 (159)
T 3c1d_A 6 RLLDRAVRILAV-------RDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYL---DDSRF 67 (159)
T ss_dssp HHHHHHHHHHTT-------SCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSC---CHHHH
T ss_pred HHHHHHHHHhhc-------ccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCc---CHHHH
Confidence 345556667654 234778888877 2 7899999999999999876 55444
No 464
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=28.43 E-value=70 Score=26.89 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=40.3
Q ss_pred CChhHHHHHHHhcCcC-CCCCCCCcCHHHHHHhcC--CCHHHHHHHHHHHhhCCeEEe
Q 024592 199 GKSIDQMVLDFLRRPE-FLANNNGVHRNVISQQLN--LPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~-~~~~~~Gv~~~~I~~~l~--~~~~~v~~al~~L~~eG~IYs 253 (265)
...++..|++.|.+-. ......|++.+++.+++. +++.-+...|+.|+.+|.|-.
T Consensus 64 ~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~ 121 (258)
T 1lva_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQL 121 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEe
Confidence 3456777777765311 013358999999999983 888889999999999998644
No 465
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=28.04 E-value=40 Score=27.60 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=40.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc--------CCCHHHHHHHHHHHhhCCeEEe-ec--CC-----ceeeccC
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL--------NLPMDKLMEALESLNENSLVYS-ID--EF-----HYKSAVN 264 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l--------~~~~~~v~~al~~L~~eG~IYs-iD--d~-----hyk~t~~ 264 (265)
+++..||.+|.+. + .+--+|.+.+ +++...|..+|..|.++|.|-+ .. +. .|+.|..
T Consensus 36 s~r~~IL~lL~~~----p---~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~ 108 (204)
T 3l9f_A 36 QGKDIILGILSKK----E---RSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITES 108 (204)
T ss_dssp CHHHHHHHHTSSC----C---EEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHH
T ss_pred HHHHHHHHHHHcC----C---CCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChH
Confidence 5788899999752 2 3444454444 4899999999999999999987 43 11 4777753
No 466
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=27.62 E-value=31 Score=25.21 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=35.1
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHh
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLN 246 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~ 246 (265)
.|++-.++|.++|-++. ..-.-+++.+|++.++.++..|-.-+..|=
T Consensus 14 ~lt~~e~~ia~yil~~~--~~~~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 14 YFTKNEKKIAQFILNYP--HKVVNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp GSCHHHHHHHHHHHHCH--HHHTTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHhCH--HHHHHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 57788889999887653 222567999999999988888776666553
No 467
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=27.60 E-value=57 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
+|.+.++|+++|+++...|...|..-
T Consensus 33 ~g~tQ~eIA~~lGiSR~~VsrlL~~A 58 (101)
T 2w7n_A 33 DGKPQATFATSLGLTRGAVSQAVHRV 58 (101)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 59999999999999999988777653
No 468
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=27.59 E-value=55 Score=25.33 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHhhCCeEEe---ecCCceee
Q 024592 232 NLPMDKLMEALESLNENSLVYS---IDEFHYKS 261 (265)
Q Consensus 232 ~~~~~~v~~al~~L~~eG~IYs---iDd~hyk~ 261 (265)
-++.++|.+-+++|++.|.+-. .|+.|++.
T Consensus 13 ~ltdeqI~kQI~Yll~qGw~p~iEf~d~~~~r~ 45 (138)
T 1bwv_S 13 DLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRN 45 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTC
T ss_pred CCCHHHHHHHHHHHHHCCCeeeEEecCCCCCcc
Confidence 3678999999999999999877 67778753
No 469
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=27.57 E-value=1e+02 Score=21.95 Aligned_cols=31 Identities=3% Similarity=-0.012 Sum_probs=26.3
Q ss_pred CCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe
Q 024592 220 NGVHRNVISQQLNLPMDKLMEALESLNENSL 250 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~ 250 (265)
.++++.+++++++++.++|..=.....+.|.
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 3789999999999999999988877766653
No 470
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=27.31 E-value=51 Score=20.22 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=7.9
Q ss_pred hcCCCHHH-HHHHHHHHh
Q 024592 230 QLNLPMDK-LMEALESLN 246 (265)
Q Consensus 230 ~l~~~~~~-v~~al~~L~ 246 (265)
..+++.++ |++||...+
T Consensus 30 ~~g~s~s~~ir~ai~~~l 47 (55)
T 2k9i_A 30 EKNLTLSDVCRLAIKEYL 47 (55)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 33444444 455555444
No 471
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=26.99 E-value=77 Score=29.20 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALE 243 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~ 243 (265)
..|+.-++.|+.+.--. ..++|.+..+|++.|+++...|++.+.
T Consensus 374 ~~L~ereR~VI~LRygL---~~~e~~TleEIAe~LgIS~erVRqi~~ 417 (438)
T 1l9z_H 374 SKLSEREAMVLKLRKGL---IDGREHTLEEVGAYFGVTRERIRQIEN 417 (438)
T ss_pred HhCCHHHHHHHHHHHhc---cCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34666677776543211 224699999999999999999986543
No 472
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=26.79 E-value=72 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=37.3
Q ss_pred CChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhh
Q 024592 199 GKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNE 247 (265)
Q Consensus 199 l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~ 247 (265)
.+..|..||-.+.+ .+.+++++|++.+++++++++.+|..|+.
T Consensus 591 vs~~Qa~iLllFn~------~~~lt~~ei~~~t~i~~~~l~r~L~sL~~ 633 (759)
T 2hye_C 591 VSLFQTLVLLMFNE------GDGFSFEEIKMATGIEDSELRRTLQSLAC 633 (759)
T ss_dssp EEHHHHHHHHHTTS------CCCEEHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred EcHHHHHHHHHhcC------CCCcCHHHHHHHHCcCHHHHHHHHHHHHc
Confidence 45788999988865 34799999999999999999999999984
No 473
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=26.70 E-value=58 Score=25.17 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHhhCCeEEe---ecCCceee
Q 024592 232 NLPMDKLMEALESLNENSLVYS---IDEFHYKS 261 (265)
Q Consensus 232 ~~~~~~v~~al~~L~~eG~IYs---iDd~hyk~ 261 (265)
.++.++|.+-|++|++.|.+-. .|+.||+.
T Consensus 13 ~ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~r~ 45 (138)
T 4f0h_B 13 DLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRN 45 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEEESCCCTTC
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCCCCCcC
Confidence 3678999999999999999876 67777753
No 474
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=26.68 E-value=1.2e+02 Score=25.37 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=38.8
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHhhCCeEEeecCCceee
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLNENSLVYSIDEFHYKS 261 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsiDd~hyk~ 261 (265)
...+.|+..+.. + ..+..+|++.+ +++..++..+|+.|.+.|.|+..+ ..|..
T Consensus 282 ~~~~~~l~~la~-g------~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~-~~y~~ 339 (350)
T 2qen_A 282 PRYVDILRAIAL-G------YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEED-NTYKI 339 (350)
T ss_dssp HHHHHHHHHHHT-T------CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred hhHHHHHHHHHh-C------CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecC-CEEEE
Confidence 445566666643 1 25788998777 789999999999999999998743 34543
No 475
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=26.34 E-value=48 Score=20.78 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=23.9
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDK 237 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~ 237 (265)
.+.++++.+|.+.. ...|-+..+|+++| +++..+
T Consensus 5 EvDdelY~YIas~t---~~igEsaSdiLRRll~l~~~~ 39 (50)
T 1xrx_A 5 EVDDELYSYIASHT---KHIGESASDILRRMLKFSAAS 39 (50)
T ss_dssp EECHHHHHHHHTTC---SSTTCCHHHHHHHHHTC----
T ss_pred eecHHHHHHHHHhc---hhhccCHHHHHHHHHcCCccc
Confidence 35678999998863 46788999999987 766554
No 476
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.03 E-value=28 Score=26.65 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=33.2
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCe
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSL 250 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~ 250 (265)
..+..|+.++. .|.++.+|++.|+++...|+..+......|.
T Consensus 29 e~r~~ii~l~~--------~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~ 70 (159)
T 2k27_A 29 VVRQRIVDLAH--------QGVRPCDISRQLRVSHGCVSKILGRYYETGS 70 (159)
T ss_dssp HHHHHHHHHHH--------HTCCHHHHHHHHTCCSHHHHHHHCCSSTTSC
T ss_pred HHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 45566776663 3789999999999999999999887766664
No 477
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=25.55 E-value=25 Score=25.83 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESL 245 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L 245 (265)
.+++..++|.++|-++. ..-..+++.+|++.++.++..|-.-+..|
T Consensus 18 ~ls~~e~~ia~yil~~~--~~~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 18 XLPPSERKLADYILAHP--HXAIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp GSCHHHHHHHHHHHHCH--HHHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHCh--HHHHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 57788888999887643 11246788888888877776665444433
No 478
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=25.37 E-value=2.4e+02 Score=21.82 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=45.5
Q ss_pred eEEEEEEEEEEeeeCCCeEEEEEEcCCC--eEEEEEecccccccccccccCCCCEEEEEEEee-eeCCccEE
Q 024592 68 NTITVVGIVCDMQDKEPQFIFLIDDGTG--RIECSRWAHEQMEFNEVNQISKGMYVRVYGHLK-AFQDKRSL 136 (265)
Q Consensus 68 ~~V~iVG~V~~v~~~~t~~~y~LdDgTG--~I~~~~w~~~~~~~~~~~~~~~g~yVrV~G~i~-~f~~~~~i 136 (265)
....+++.|+++.....++.+.|.|.+- .+.+..|.+-..+ ..+.+..+.+.-..--+| .|+++.++
T Consensus 131 qylsvlaqvvdiqssdknirlkicdnscnqelkvvifpdlcye--wrdkfsinkwyyfnefvrqiyndevql 200 (213)
T 3u58_A 131 QYLSVLAQVVDIQSSDKNIRLKICDNSCNQELKVVIFPDLCYE--WRDKFSINKWYYFNEFVRQIYNDEVQL 200 (213)
T ss_dssp SEEEEEEEEEEEEECSSCEEEEEECTTCSCCEEEEECTTTTGG--GTTCCCTTCEEEEEEEEECCSSSSCEE
T ss_pred HHHHHHHHhhccccCCCceEEEeecccccceeEEEEchhHhhH--hhhhcchhhhhhHHHHHHHHhhhhhhh
Confidence 3578899999999999999999999874 5888888765432 234455555444433333 24555444
No 479
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.24 E-value=24 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=33.7
Q ss_pred CCcCHHHHHHhcC------CCHHHHHHHHHHHhhCCeEEe-ecCCc
Q 024592 220 NGVHRNVISQQLN------LPMDKLMEALESLNENSLVYS-IDEFH 258 (265)
Q Consensus 220 ~Gv~~~~I~~~l~------~~~~~v~~al~~L~~eG~IYs-iDd~h 258 (265)
.=|++++|+..++ ++++|++-.|-.|+.+|.|=- ||-.+
T Consensus 140 ~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~ 185 (203)
T 3t5x_A 140 HQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQH 185 (203)
T ss_dssp SEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTT
T ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccc
Confidence 4689999999984 489999999999999999988 77654
No 480
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=25.13 E-value=74 Score=24.72 Aligned_cols=40 Identities=5% Similarity=0.150 Sum_probs=33.5
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHHh
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESLN 246 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L~ 246 (265)
.-+..|+++|++. .-.+.+|+++.| +.+...|+.-|.+|-
T Consensus 5 ~R~~~I~~li~~~------~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~ 49 (149)
T 1b4a_A 5 QRHIKIREIIMSN------DIETQDELVDRLREAGFNVTQATVSRDIKEMQ 49 (149)
T ss_dssp HHHHHHHHHHHHS------CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC------CCccHHHHHHHHHHcCCCcCHHHHHHHHHHcC
Confidence 4677899999874 356999999999 799999999999883
No 481
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=25.03 E-value=52 Score=28.27 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=40.4
Q ss_pred hHHHHHHHh----cCcCCCCCCCCcCHHHHHH---hcCCCHHHHHHHHHHHhhCCeEEeecCC---ceeecc
Q 024592 202 IDQMVLDFL----RRPEFLANNNGVHRNVISQ---QLNLPMDKLMEALESLNENSLVYSIDEF---HYKSAV 263 (265)
Q Consensus 202 ~~~~Vl~~i----~~~~~~~~~~Gv~~~~I~~---~l~~~~~~v~~al~~L~~eG~IYsiDd~---hyk~t~ 263 (265)
-+..|+.++ ... ...|.+..+++ .|++++.-||.+|..|..+|.|-+.... .|..|.
T Consensus 24 a~Sli~tl~Gd~~~~~-----g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~ 90 (266)
T 3l09_A 24 LWSVLVTCLGDVSRDG-----VIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266)
T ss_dssp HHHHHHHHHHHHHHTT-----CCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred hhHHHHHHHHHHhccC-----CCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECH
Confidence 455667666 432 23588888655 5589999999999999999999773222 566553
No 482
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=25.00 E-value=57 Score=30.73 Aligned_cols=46 Identities=4% Similarity=0.116 Sum_probs=35.0
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.-.+|+++|...+ -+.-++|++...++..++|+.|-.|.++|.|.-
T Consensus 361 ~a~RI~r~L~~~~------~l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~ 406 (534)
T 2xub_A 361 RCARIFRLVLQKK------HIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSL 406 (534)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHCSCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHcC------CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Confidence 3345777776531 378899999999999999999999999999865
No 483
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.51 E-value=1.1e+02 Score=25.72 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=36.3
Q ss_pred CChhHHHHHH-HhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH-HhhCCeEEe
Q 024592 199 GKSIDQMVLD-FLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES-LNENSLVYS 253 (265)
Q Consensus 199 l~~~~~~Vl~-~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~-L~~eG~IYs 253 (265)
+....+.++. +++.. ....+++.++++.|+++...+...++. |++.|.|+.
T Consensus 245 l~~~e~~~i~~~~~~~----~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 245 LEKRDREILEVLILRF----GGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp CCHHHHHHHHHHHHHS----CSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHh----cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhc
Confidence 4445545544 34332 123467999999999999999997776 899999875
No 484
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=24.25 E-value=1.4e+02 Score=20.51 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=27.1
Q ss_pred hHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHH
Q 024592 202 IDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALES 244 (265)
Q Consensus 202 ~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~ 244 (265)
-...||+++-..- .-...+..+.|++.. ||+-.+|...+.+
T Consensus 5 ~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~SGADl~~l~~e 46 (88)
T 3vlf_B 5 GRANIFRIHSKSM--SVERGIRWELISRLCPNSTGAELRSVCTE 46 (88)
T ss_dssp HHHHHHHHHHTTS--CBCSCCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCCCccCHHHHHHHcCCCcHHHHHHHHHH
Confidence 3556777654332 223568889999887 6888887766553
No 485
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=24.10 E-value=67 Score=23.70 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=23.6
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHhhCCeEEe-ec
Q 024592 224 RNVISQQLN-LPMDKLMEALESLNENSLVYS-ID 255 (265)
Q Consensus 224 ~~~I~~~l~-~~~~~v~~al~~L~~eG~IYs-iD 255 (265)
|+.+++.+. .+..|-...-+.|+++|.||. .|
T Consensus 44 VdWLi~~~~~~~R~EAv~lgq~Ll~~G~i~hV~d 77 (109)
T 1uhw_A 44 IDWLVSNKLVRNRQEGLMISASLLSEGYLQPAGD 77 (109)
T ss_dssp HHHHHHHTSSSSHHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCeEEeCcc
Confidence 455556553 466777777799999999999 65
No 486
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=24.06 E-value=66 Score=22.07 Aligned_cols=40 Identities=5% Similarity=-0.074 Sum_probs=29.0
Q ss_pred CCChhHHHHHHHhcC-----cCCCCCCCCcCHHHHHHhcCCCHHHHHH
Q 024592 198 EGKSIDQMVLDFLRR-----PEFLANNNGVHRNVISQQLNLPMDKLME 240 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~-----~~~~~~~~Gv~~~~I~~~l~~~~~~v~~ 240 (265)
.++..|..+|+.+.. +.. .......+|++.|++++.+|+-
T Consensus 23 ~ft~~Ql~~Le~F~~~~~w~~~y---p~~~~r~~La~~lgL~e~qVkv 67 (80)
T 1wh7_A 23 KFTAEQKEKMLAFAERLGWRIQK---HDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTSCCCS---STTHHHHHHHHHSCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCcCCCC---CCHHHHHHHHHHhCcCcCcccc
Confidence 367788888876665 421 2355778999999999998864
No 487
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=23.76 E-value=1.4e+02 Score=21.16 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=35.4
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC----CCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN----LPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~----~~~~~v~~al~~L~~eG~IYs 253 (265)
-.++..|..++|... .-.+--=+.+++++|. .+...|++.|+.|++-..|=-
T Consensus 25 ~~i~AaIVRIMK~rK--~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR 80 (92)
T 1iuy_A 25 HEIEAAIVRIMKSRK--KMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLAR 80 (92)
T ss_dssp THHHHHHHHHHHHHC--EEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHeeeeeeehhhccc--cccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhc
Confidence 368888888888642 1011112345555553 677889999999999998877
No 488
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.47 E-value=1e+02 Score=19.31 Aligned_cols=22 Identities=0% Similarity=0.022 Sum_probs=15.2
Q ss_pred CCcCHHHHHHhcCCCHHHHHHH
Q 024592 220 NGVHRNVISQQLNLPMDKLMEA 241 (265)
Q Consensus 220 ~Gv~~~~I~~~l~~~~~~v~~a 241 (265)
.|++..++++.++++...|...
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4777777777777776666543
No 489
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=23.26 E-value=1.3e+02 Score=20.57 Aligned_cols=48 Identities=8% Similarity=0.254 Sum_probs=38.6
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
.+|=.+..+++.+. .-.++..|.++|++.-..--..++.|..+|.|=.
T Consensus 9 D~Ly~~A~~~V~~~------~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 9 DPLYDEAVRFVTES------RRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp CTTHHHHHHHHHHH------CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred cHHHHHHHHHHHhc------CCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 45667777777653 2468999999999998999999999999998743
No 490
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=22.84 E-value=18 Score=29.17 Aligned_cols=41 Identities=5% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHH
Q 024592 197 DEGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALES 244 (265)
Q Consensus 197 ~~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~ 244 (265)
..|++.++.|+.+.. -.|.+..+|++.|++++..|+..+..
T Consensus 197 ~~L~~~~r~vl~l~~-------~~g~s~~EIA~~lgis~~tV~~~~~r 237 (243)
T 1l0o_C 197 EELDERERLIVYLRY-------YKDQTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp ------------------------------------------------
T ss_pred HhCCHHHHHHHHHHH-------hcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 346667777775532 24899999999999999998876653
No 491
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=22.60 E-value=1e+02 Score=24.82 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=33.7
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-----CCCHHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQL-----NLPMDKLMEALESL 245 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-----~~~~~~v~~al~~L 245 (265)
.|+....+||.+|-.. ...+++.++|++.+ ..++..|+..+..|
T Consensus 176 ~LT~rE~~iL~~l~~~----~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~l 224 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVIN----AGTVLSKPKILDHVWRYDFGGDVNVVESYVSYL 224 (250)
T ss_dssp CCCHHHHHHHHHHHHT----TTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHC----CCceEcHHHHHHHHcCCCCCCCccCHHHHHHHH
Confidence 4888999999998653 35799999999998 35767666665554
No 492
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=22.37 E-value=75 Score=20.80 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=8.0
Q ss_pred HHHHHHhcCCCHHHHHHH
Q 024592 224 RNVISQQLNLPMDKLMEA 241 (265)
Q Consensus 224 ~~~I~~~l~~~~~~v~~a 241 (265)
+.+|++.++++...|-.+
T Consensus 3 ~~diA~~aGVS~sTVSrv 20 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYV 20 (65)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 344444444444444433
No 493
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=22.33 E-value=61 Score=29.10 Aligned_cols=33 Identities=6% Similarity=-0.110 Sum_probs=30.2
Q ss_pred CcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe
Q 024592 221 GVHRNVISQQLNLPMDKLMEALESLNENSLVYS 253 (265)
Q Consensus 221 Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs 253 (265)
-+++.++++.++.+...++..|..|++.|.|-.
T Consensus 311 ~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~ 343 (373)
T 3eqx_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE
T ss_pred CccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEE
Confidence 468899999999999999999999999999865
No 494
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=21.99 E-value=79 Score=24.82 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcC-----CCHHHHHHHHHHH
Q 024592 198 EGKSIDQMVLDFLRRPEFLANNNGVHRNVISQQLN-----LPMDKLMEALESL 245 (265)
Q Consensus 198 ~l~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~-----~~~~~v~~al~~L 245 (265)
.|+.-..+||.+|.+. ....++.++|++.+. .++..|+.-+..|
T Consensus 151 ~Lt~rE~~vL~~l~~~----~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l 199 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMN----KNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNL 199 (225)
T ss_dssp CCCHHHHHHHHHHHHT----TTSCEEHHHHHHHCC-----CHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhC----CCcccCHHHHHHHhcCCCCCCCcchHHHHHHHH
Confidence 4788889999988653 234699999999996 6776666655544
No 495
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=21.93 E-value=1.1e+02 Score=21.03 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=29.9
Q ss_pred hhHHHHHHHhcCcCCCCCCCCcCHHHHHHhc-CCCHHHHHHHHHH
Q 024592 201 SIDQMVLDFLRRPEFLANNNGVHRNVISQQL-NLPMDKLMEALES 244 (265)
Q Consensus 201 ~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l-~~~~~~v~~al~~ 244 (265)
.-...||++.-..- .-...+..++|+++. +|+-.+|...+.+
T Consensus 14 ~~R~~IL~~~l~~~--~l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 14 EARLDILKIHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp HHHHHHHHHHTTTS--EECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667888754432 223578899999988 7999998877654
No 496
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=21.69 E-value=82 Score=21.07 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHH
Q 024592 203 DQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEA 241 (265)
Q Consensus 203 ~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~a 241 (265)
..+|...+++ .|++..+++++++++...|...
T Consensus 11 ~~ri~~~l~~-------~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 11 RADVIAGLKK-------RKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp HHHHHHHHHT-------TSCCHHHHHHHHSSCHHHHHHT
T ss_pred HHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHH
Confidence 3446666653 4899999999999998887765
No 497
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=21.66 E-value=1.2e+02 Score=28.50 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=42.2
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
.++-..|..+|-.. -..+..+|++..+++..+|+.+|--|+..+.||- .++
T Consensus 18 G~~~~~V~~~Ll~~------G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~ 69 (534)
T 2xub_A 18 GEIVEKIGVHLIRT------GSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHK 69 (534)
T ss_dssp HHHHHHHHHHHHHH------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred ChHHHHHHHHHHhc------CCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCC
Confidence 35667788877553 2579999999999999999999999999999987 553
No 498
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=21.53 E-value=1.8e+02 Score=21.28 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=30.7
Q ss_pred ChhHHHHHHHhcCcCCCCCCCCcCHHHHHHhcCC--CHHHHHHHHHH
Q 024592 200 KSIDQMVLDFLRRPEFLANNNGVHRNVISQQLNL--PMDKLMEALES 244 (265)
Q Consensus 200 ~~~~~~Vl~~i~~~~~~~~~~Gv~~~~I~~~l~~--~~~~v~~al~~ 244 (265)
++.+++|+++|++-+ ..+=++..+|++.++. ....|-.||..
T Consensus 2 t~F~~~V~~~l~~IP---~G~v~TYg~iA~~~G~p~aaRaVG~Al~~ 45 (108)
T 2kif_A 2 DQFLVQIFAVIHQIP---KGKVSTYGEIAKMAGYPGYARHVGKALGN 45 (108)
T ss_dssp CHHHHHHHHHHTTCC---TTCBEEHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---CCCcEeHHHHHHHhCCCCcHHHHHHHHHh
Confidence 578999999999864 2334789999999986 44556666654
No 499
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.36 E-value=40 Score=30.38 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=34.6
Q ss_pred CCCcCHHHHHHhcCCCHHHHHHHHHHHhhCCeEEe-ecC
Q 024592 219 NNGVHRNVISQQLNLPMDKLMEALESLNENSLVYS-IDE 256 (265)
Q Consensus 219 ~~Gv~~~~I~~~l~~~~~~v~~al~~L~~eG~IYs-iDd 256 (265)
..-++.++|++.|++++++|+..+-.++..|.|-- ||.
T Consensus 305 ~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQ 343 (393)
T 4b4t_O 305 IRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQ 343 (393)
T ss_dssp CCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEET
T ss_pred CCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcC
Confidence 45799999999999999999999999999999977 775
No 500
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=21.26 E-value=53 Score=24.43 Aligned_cols=35 Identities=6% Similarity=0.148 Sum_probs=22.2
Q ss_pred ChhHHHHHH----HhcCcCCCCCCCCcCHHHHHHhcCCCHHHH
Q 024592 200 KSIDQMVLD----FLRRPEFLANNNGVHRNVISQQLNLPMDKL 238 (265)
Q Consensus 200 ~~~~~~Vl~----~i~~~~~~~~~~Gv~~~~I~~~l~~~~~~v 238 (265)
+.-+++|++ ++.+. .-.++++++|+++.+++...+
T Consensus 3 ~~~r~~Il~aa~~l~~~~----G~~~~t~~~Ia~~agvs~~t~ 41 (170)
T 3egq_A 3 TDQSVRIIEAALRLYMKK----PPHEVSIEEIAREAKVSKSLI 41 (170)
T ss_dssp CHHHHHHHHHHHHHHTTS----CGGGCCHHHHHHHHTSCHHHH
T ss_pred cHHHHHHHHHHHHHHHhc----CCccCcHHHHHHHhCCCchhH
Confidence 344455544 55553 345799999999997555443
Done!