BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024593
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SGW++GA G++ +E +H
Sbjct: 399 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGWMEGAVEAGERAAREILH 452
>pdb|3T3A|A Chain A, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
pdb|3T3A|B Chain B, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
Length = 139
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 51 YVGLRIPDPD------TGSRQNIDIVLITKGEAVVISVKNLSG----FVTVNADGSWVCE 100
++GLR PD GS N D++ IT G+ S +SG F + N+D W+C+
Sbjct: 65 WIGLRYTLPDMNWKWINGSTLNSDVLKIT-GDTENDSCAAISGDKVTFESCNSDNRWICQ 123
Query: 101 AVGRHRSAAH 110
H + ++
Sbjct: 124 KELYHETLSN 133
>pdb|3M9Z|A Chain A, Crystal Structure Of Extracellular Domain Of Mouse Nkr-P1a
Length = 139
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 51 YVGLRIPDPD------TGSRQNIDIVLITKGEAVVISVKNLSG----FVTVNADGSWVCE 100
++GLR PD GS N D++ IT G+ S +SG F + N+D W+C+
Sbjct: 65 WIGLRYTLPDMNWKWINGSTLNSDVLKIT-GDTENDSCAAISGDKVTFESCNSDNRWICQ 123
Query: 101 AVGRHRSAAH 110
H + ++
Sbjct: 124 KELYHETLSN 133
>pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RR1|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RRA|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
pdb|3RRA|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
Length = 405
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 168 QWMLMKPENKSMLSGWIKGAFRGGKKEMQESIHQQLNFILSTAP 211
+WM +K E ++GW + G + ++ ++H+ ++++ P
Sbjct: 15 RWMFLKVETDEGVTGWGEPVIEGRARTVEAAVHELSDYLIGQDP 58
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SG+++GA G++ +E +H
Sbjct: 398 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SG+++GA G++ +E +H
Sbjct: 398 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SG+++GA G++ +E +H
Sbjct: 399 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SG+++GA G++ +E +H
Sbjct: 399 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SG+++GA G++ +E +H
Sbjct: 399 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 156 ASYFPPEVISYDQWMLMKP---------ENKSMLSGWIKGAFRGGKKEMQESIH 200
+YFPP +++ +L +P E + SG+++GA G++ +E +H
Sbjct: 399 TTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGFMEGAVEAGERAAREILH 452
>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
Length = 257
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 63 SRQNIDIVLITKGEAVVISVKNLSGFVTVNADGSWVCEAVGRHRSAAHPDPVAEAKKQAS 122
+R+ + I LIT + ++ L+G++ GS V AVG SA P+ + + S
Sbjct: 195 ARRELAIPLITMAMGGLGAITRLAGWLF----GSAVTFAVGNQSSAPGQIPIDDVRTVLS 250
Query: 123 ILESY 127
IL++Y
Sbjct: 251 ILQTY 255
>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
Length = 263
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 154 INASYFPPEVISYDQWMLMKPENKSMLSGWIKGAFRGG--------KKEMQESIHQQL 203
+ ASYF P +I Y+Q M + E K S + A R G K+E+QE + L
Sbjct: 147 LGASYFLPRIIGYEQTMNLLLEGKLFTS---EEALRLGLIQEICENKQELQERVKNYL 201
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 140 LSYKVIIPNPKFRVINASYFPPEVISYDQWMLMKPENKSMLSGWI 184
++K +P +RVIN + PE +W ++ PE++ + WI
Sbjct: 299 FTFKTNRHSPNYRVINIDFTDPEE---SKWKVLVPEHEKDVLEWI 340
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 87 GFVTVNADGSWVCEAVGRHRSAAHPDPVAEAKKQASILESYLEQRGVALPEGYLSYKVII 146
F+TVNA+G G P+ V AK + + Q V +P ++++
Sbjct: 97 AFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAK 156
Query: 147 PNPKFRVIN---ASYFPPEVISYDQWMLMKPENKSMLSGWIKGAFRGGKKEMQESIHQQL 203
+ V+N A P E++S ++ +LSG K ++S+
Sbjct: 157 AHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGI--------KVTNEQSMKDNA 208
Query: 204 NFILS 208
N+ LS
Sbjct: 209 NYFLS 213
>pdb|4H6Q|A Chain A, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6Q|C Chain C, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6R|A Chain A, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
pdb|4H6R|C Chain C, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
Length = 312
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 49 KAYVGLRIPDPDTGSRQNIDIVLITKGEAVVISVKNLSGFVTVN-ADGSWVCEAVGRHRS 107
K YV +++ G +N + + +T ++ K GF+ ++ D + V + + R+
Sbjct: 94 KPYVSIKLSSVGQGKDENGEDLGLTNARRIIAKAKEYGGFICLDMEDHTRVDVTLEQFRT 153
Query: 108 AAHPDPVAE--AKKQASILESYLEQRGVALPEGYLSYKVIIPN--PKFRVINASYFPPEV 163
V E A+ ++L+SYL + L + + + P R++ +Y P
Sbjct: 154 L-----VGEFGAEHVGTVLQSYLYRS--------LGDRASLDDLRPNIRMVKGAYLEPAT 200
Query: 164 ISY 166
++Y
Sbjct: 201 VAY 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,110,386
Number of Sequences: 62578
Number of extensions: 339339
Number of successful extensions: 819
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 16
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)