BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024593
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1U5Z6|PNP_MARAV Polyribonucleotide nucleotidyltransferase OS=Marinobacter aquaeolei
           (strain ATCC 700491 / DSM 11845 / VT8) GN=pnp PE=3 SV=1
          Length = 722

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 138 GYLSYKVIIPNPKFRVINASYFPPEVISYDQWMLM-KPENKSMLSGWIKGAFRGGKKEMQ 196
           GY + K    NP F  ++ S     V   D+ +LM + E K +    + GA   G +EMQ
Sbjct: 172 GYTNEKGYFLNPTFEELSTSLLDMVVAGTDEAVLMVESEAKGLTEDQMLGAVLFGHQEMQ 231

Query: 197 ESIHQQLNFILSTA-PIWD-RLEVKGNKYVLGEFLEFKGKQEDIQALRYIKRSKVSRL 252
            +I     F      P W+ + E +  + +     EF G  E+  A+R  K ++  RL
Sbjct: 232 TAITAIKEFAAENGKPRWEWQPEAENTELLNAIKAEFGGAIEEAYAIRD-KMARYERL 288


>sp|Q96JK9|MAML3_HUMAN Mastermind-like protein 3 OS=Homo sapiens GN=MAML3 PE=1 SV=3
          Length = 1134

 Score = 32.3 bits (72), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 216 LEVKGNKYVLGEFLEFKGKQEDIQALRY---IKRSKVSRLVVQKTSMFGLG 263
           L+ + N Y + +  +F+G  +DI A+R    ++  + SRL+ Q   M G+G
Sbjct: 785 LQPQRNPYPVQQVNQFQGSPQDIAAVRSQAALQSMRTSRLMAQNAGMMGIG 835


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,382,162
Number of Sequences: 539616
Number of extensions: 4275918
Number of successful extensions: 10105
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10103
Number of HSP's gapped (non-prelim): 5
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)