Query 024593
Match_columns 265
No_of_seqs 174 out of 394
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y88_A Hypothetical protein AF 93.7 0.14 4.8E-06 43.8 6.7 56 28-86 14-69 (199)
2 2wcw_A HJC; type II restrictio 92.7 0.2 7E-06 40.3 5.9 53 30-86 7-59 (139)
3 1ob8_A Holliday-junction resol 91.6 0.33 1.1E-05 39.0 5.9 55 29-87 4-58 (135)
4 3fov_A UPF0102 protein RPA0323 90.8 0.49 1.7E-05 37.9 6.1 80 30-132 22-101 (134)
5 1hh1_A Holliday junction resol 89.4 0.67 2.3E-05 37.4 5.9 54 29-86 6-60 (143)
6 2eo0_A Hypothetical protein ST 89.3 0.73 2.5E-05 37.4 6.1 54 29-86 9-63 (147)
7 1gef_A Holliday junction resol 86.5 0.61 2.1E-05 36.7 3.9 48 30-86 4-51 (123)
8 1m0d_A Endonuclease, endodeoxy 68.9 2.6 8.9E-05 33.8 2.4 116 31-190 5-125 (138)
9 1xmx_A Hypothetical protein VC 62.0 9 0.00031 35.3 5.1 49 35-83 255-310 (385)
10 1d3b_B Protein (small nuclear 43.1 16 0.00053 26.5 2.7 23 211-233 14-36 (91)
11 3s6n_G Small nuclear ribonucle 42.4 17 0.00058 25.5 2.7 23 211-233 14-36 (76)
12 1h64_1 SnRNP SM-like protein; 40.4 19 0.00064 25.0 2.7 25 209-233 12-36 (75)
13 1th7_A SnRNP-2, small nuclear 38.7 21 0.0007 25.3 2.7 23 211-233 19-41 (81)
14 1i4k_A Putative snRNP SM-like 36.6 22 0.00075 24.8 2.6 25 209-233 12-36 (77)
15 1mgq_A SM-like protein; LSM, R 36.5 23 0.0008 25.2 2.7 23 211-233 25-47 (83)
16 2vld_A NUCS, UPF0286 protein p 35.9 60 0.002 28.3 5.8 68 35-128 131-199 (251)
17 3dnx_A Uncharacterized protein 35.1 68 0.0023 26.0 5.5 41 38-84 20-61 (153)
18 1i8f_A Putative snRNP SM-like 32.8 26 0.00089 24.8 2.5 28 206-233 16-43 (81)
19 4emk_B U6 snRNA-associated SM- 31.1 24 0.00082 24.6 2.0 23 211-233 14-36 (75)
20 1ljo_A Archaeal SM-like protei 30.2 32 0.0011 23.9 2.6 25 209-233 13-38 (77)
21 1d3b_A Protein (small nuclear 30.0 33 0.0011 23.9 2.6 23 211-233 15-37 (75)
22 3bw1_A SMX4 protein, U6 snRNA- 29.7 29 0.00099 25.5 2.3 26 208-233 17-42 (96)
23 1z65_A PRPLP, prion-like prote 29.3 24 0.00084 20.6 1.4 11 2-12 9-19 (30)
24 4emk_A U6 snRNA-associated SM- 29.0 38 0.0013 25.0 2.9 23 211-233 30-52 (94)
25 4emg_A Probable U6 snRNA-assoc 28.8 37 0.0012 24.8 2.7 24 210-233 18-41 (93)
26 4emk_C U6 snRNA-associated SM- 28.6 31 0.0011 26.3 2.4 33 201-233 23-55 (113)
27 3s6n_F Small nuclear ribonucle 28.4 35 0.0012 24.5 2.6 23 211-233 16-38 (86)
28 1n9r_A SMF, small nuclear ribo 27.8 43 0.0015 24.5 3.0 25 209-233 29-54 (93)
29 2fwk_A U6 snRNA-associated SM- 25.4 36 0.0012 26.1 2.2 21 213-233 40-60 (121)
30 2inb_A Hypothetical protein; Z 24.2 49 0.0017 26.4 2.8 47 36-85 10-63 (140)
31 4emh_A Probable U6 snRNA-assoc 22.8 50 0.0017 24.8 2.6 23 211-233 26-48 (105)
32 1b34_B Protein (small nuclear 21.8 53 0.0018 25.0 2.6 22 212-233 40-61 (118)
33 3pgw_B SM B; protein-RNA compl 20.3 55 0.0019 28.3 2.6 25 209-233 12-36 (231)
No 1
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=93.69 E-value=0.14 Score=43.76 Aligned_cols=56 Identities=21% Similarity=0.096 Sum_probs=43.7
Q ss_pred ccccchhHHHHHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCCeEEEEEeeccc
Q 024593 28 ETSDSNAIFSVAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKGEAVVISVKNLS 86 (265)
Q Consensus 28 ~~~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~gI~VIEVKn~s 86 (265)
..++...|..+++.|+. .|..+..++++.... ..++||+|.-..+.+++||||.|+
T Consensus 14 ~~~g~~fE~~va~~L~~-~Gy~i~~~v~v~~r~--~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 14 RENLYFQGHMVARLLEE-HGFETKTNVIVQGNC--VEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp --CHHHHHHHHHHHHHT-TTCEEEEEEEEECSS--SEEEEEEEEEETTEEEEEEECCCS
T ss_pred cCCHHHHHHHHHHHHHH-CCCEEEEeecccCCC--CCCcEEEEEEECCEEEEEEecccc
Confidence 56677889999999998 466677777666653 366999988888899999999877
No 2
>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A
Probab=92.67 E-value=0.2 Score=40.31 Aligned_cols=53 Identities=17% Similarity=-0.011 Sum_probs=39.5
Q ss_pred ccchhHHHHHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCCeEEEEEeeccc
Q 024593 30 SDSNAIFSVAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKGEAVVISVKNLS 86 (265)
Q Consensus 30 ~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~gI~VIEVKn~s 86 (265)
.++.+|..+++.|+.. |..|+. .|..+.....|||+|....+.+++||||.-+
T Consensus 7 ~G~~~E~~a~~~L~~~-Gy~ilR---~~~sg~~~~~eiDIIA~~~~~lv~IEVKtr~ 59 (139)
T 2wcw_A 7 KGTRFERDLLVELWKA-GFAAIR---VAGAGVSPFPCPDIVAGNGRTYLAIEVKMRK 59 (139)
T ss_dssp CHHHHHHHHHHHHHHT-TCEEEE---BTTSSSCSSCCCSEEEECSSCEEEEEEEECS
T ss_pred hHHHHHHHHHHHHHhC-CcEEEE---ecCCCCCCCCCCCEEEeECCEEEEEEEEECC
Confidence 4677899999999875 555663 3554433345999999998899999999533
No 3
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A
Probab=91.62 E-value=0.33 Score=38.96 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCCeEEEEEeeccce
Q 024593 29 TSDSNAIFSVAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKGEAVVISVKNLSG 87 (265)
Q Consensus 29 ~~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~gI~VIEVKn~sG 87 (265)
..++.+|...++.|+.. |..++ |-+..+.+...|||+|....+.++.||||.-++
T Consensus 4 ~~G~~~E~~A~~~L~~~-G~~il---r~~~~g~~~~gEiDIIA~~g~~lVfVEVKtR~~ 58 (135)
T 1ob8_A 4 DIGKNAERELVSILRGE-GFNAV---RIPTSNSSPNPLPDIFATKGNTLLSIECKSTWE 58 (135)
T ss_dssp --CHHHHHHHHHHHHHT-TCEEE---ECCC-----CCSCSEEEEETTEEEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHC-CCEEE---EEcccCCCCCCCceEEEeECCEEEEEEEEEcCC
Confidence 35677899999999985 55566 333322223449999999999999999995443
No 4
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=90.82 E-value=0.49 Score=37.89 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=49.7
Q ss_pred ccchhHHHHHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCCeEEEEEeeccceeEEECCCCcEEEEecCCccccc
Q 024593 30 SDSNAIFSVAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKGEAVVISVKNLSGFVTVNADGSWVCEAVGRHRSAA 109 (265)
Q Consensus 30 ~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~gI~VIEVKn~sG~I~~~~~~~W~q~~~~~~~~~~ 109 (265)
.+..+|...+..|+......+=.|.|-+. + |||+|..-...++.||||--++ ++. ...
T Consensus 22 ~G~~gE~~A~~~L~~~Gy~Il~rN~r~~~----G--EIDiIa~~~~~LVFVEVKtR~~--~g~--------------p~e 79 (134)
T 3fov_A 22 TGLSAEASAADYLERQGYRILARRFKTRC----G--EIDLVAQRDALVAFVEVKARGN--VDD--------------AAY 79 (134)
T ss_dssp ---CHHHHHHHHHHHTTCEEEEEEEEETT----E--EEEEEEEETTEEEEEEEEEC----------------------CC
T ss_pred HHHHHHHHHHHHHHHCCCEEEeccccCCC----C--cEEEEEEECCEEEEEEEEEccC--CCC--------------HHH
Confidence 34567888999998754445566677532 3 9999999999999999996554 111 122
Q ss_pred CCChHHHHHHHHHHHHHHHHHcC
Q 024593 110 HPDPVAEAKKQASILESYLEQRG 132 (265)
Q Consensus 110 ~~nPv~Q~~r~~~~L~~~L~~~g 132 (265)
--+|-.|. +-.++-..||.+++
T Consensus 80 aV~~~K~~-ri~~aA~~yL~~~~ 101 (134)
T 3fov_A 80 AVTPRQQS-RIVAAAEAWLSRHP 101 (134)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHCG
T ss_pred hCCHHHHH-HHHHHHHHHHHhCC
Confidence 44555554 33344556888764
No 5
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=89.41 E-value=0.67 Score=37.44 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred cccchhHHHHHHHHhcCCCceEEeeeEeeCCC-CCCccceeEEEEeCCeEEEEEeeccc
Q 024593 29 TSDSNAIFSVAARLEKLYKGKAYVGLRIPDPD-TGSRQNIDIVLITKGEAVVISVKNLS 86 (265)
Q Consensus 29 ~~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~-~~~~~EID~Vivt~~gI~VIEVKn~s 86 (265)
..++.+|..+++.|+.. |..++. -|..+ .....|||+|....+.++.||||.-+
T Consensus 6 ~~G~~~E~~a~~~L~~~-G~~ilr---~~~sg~~~~~gEiDIIA~~~~~lvfVEVK~R~ 60 (143)
T 1hh1_A 6 RKGSAVERNIVSRLRDK-GFAVVR---APASGSKRKDPIPDIIALKNGVIILIEMKSRK 60 (143)
T ss_dssp ---CHHHHHHHHHHHHT-TCEEEE---CCC-------CCCSEEEEETTEEEEEEECCEE
T ss_pred HhHHHHHHHHHHHHHHC-CCEEEE---EcCcCCcCCCCCceEEEEECCEEEEEEEEECC
Confidence 35677899999999985 555553 23322 22244999999999999999999544
No 6
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=89.30 E-value=0.73 Score=37.38 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=36.6
Q ss_pred cccchhHHHHHHHHhcCCCceEEeeeEeeCCC-CCCccceeEEEEeCCeEEEEEeeccc
Q 024593 29 TSDSNAIFSVAARLEKLYKGKAYVGLRIPDPD-TGSRQNIDIVLITKGEAVVISVKNLS 86 (265)
Q Consensus 29 ~~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~-~~~~~EID~Vivt~~gI~VIEVKn~s 86 (265)
..++.+|..+++.|+.. |..++. -+..+ .+...|||+|....+.++.||||.-+
T Consensus 9 ~~G~~~E~~a~~~L~~~-G~~ilr---~~~sgg~~~~gEiDIIA~~~~~lvfVEVK~R~ 63 (147)
T 2eo0_A 9 SRGSSVERYIVSRLRDK-GFAVIR---APASGSKRKDHVPDIIALKSGVIILIEVKSRK 63 (147)
T ss_dssp ---CHHHHHHHHHHHHT-TCEEEC---C-----CCGGGSCSEEEEETTEEEEEEEEECC
T ss_pred HhHHHHHHHHHHHHHHC-CCEEEE---EcccCCcCCCCCceEEEEeCCEEEEEEEEECC
Confidence 35677899999999985 555653 23322 22345999999999999999999544
No 7
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=86.52 E-value=0.61 Score=36.69 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCCeEEEEEeeccc
Q 024593 30 SDSNAIFSVAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKGEAVVISVKNLS 86 (265)
Q Consensus 30 ~~~~~~~~v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~gI~VIEVKn~s 86 (265)
.+..+|..+++.|+.. |..++.|.+- +|||+|..-.+.++.||||.-+
T Consensus 4 ~G~~~E~~A~~~L~~~-Gy~ilrn~r~--------~EIDIIA~~~~~lvfVEVK~R~ 51 (123)
T 1gef_A 4 KGAQAERELIKLLEKH-GFAVVRSAGS--------KKVDLVAGNGKKYLCIEVKVTK 51 (123)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEEEBGGG--------SSCSEEEECSSCEEEEEEEEES
T ss_pred hhHHHHHHHHHHHHHC-CCEEEEecCC--------CCceEEEEeCCEEEEEEEEeCC
Confidence 3566889999999885 5555555441 2999999988899999999543
No 8
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=68.90 E-value=2.6 Score=33.79 Aligned_cols=116 Identities=19% Similarity=0.339 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHhcCCCceEEeeeEeeCC--CCCCccceeEEEEeCCeEEEEEeeccceeEEECCCCcEEEEecCCcccc
Q 024593 31 DSNAIFSVAARLEKLYKGKAYVGLRIPDP--DTGSRQNIDIVLITKGEAVVISVKNLSGFVTVNADGSWVCEAVGRHRSA 108 (265)
Q Consensus 31 ~~~~~~~v~~~L~~l~~~~vl~~lrlp~~--~~~~~~EID~Vivt~~gI~VIEVKn~sG~I~~~~~~~W~q~~~~~~~~~ 108 (265)
+|.-|.+++..|.++.-..-|....+|.. +....-..|.+| |+|+ ++|||. .|.
T Consensus 5 RSglEek~A~~Le~~GV~y~yE~~k~~Y~ip~~~~~YtPDF~L--pngi-~iEvKG-----------~~~---------- 60 (138)
T 1m0d_A 5 RSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLL--PNGI-FVETKG-----------LWE---------- 60 (138)
T ss_dssp -CHHHHHHHHHHHHTTCCCEESCEEEEEEECCEEEEECCSEEC--TTSC-EEEEES-----------SCC----------
T ss_pred cchHHHHHHHHHHhCCCCEEeecceEeeeecCCCceeCCCEEc--cCCC-EEEecc-----------cCC----------
Confidence 35678899999999875555666554443 222344899999 6787 899992 332
Q ss_pred cCCChHHHHHHHHHHHHHHHHHcCCCCCCCceeEEEEEeCCCeeEecCCCCCCccccHhHHhH---hhhhhhhhhhhhhc
Q 024593 109 AHPDPVAEAKKQASILESYLEQRGVALPEGYLSYKVIIPNPKFRVINASYFPPEVISYDQWML---MKPENKSMLSGWIK 185 (265)
Q Consensus 109 ~~~nPv~Q~~r~~~~L~~~L~~~g~~lp~~~i~~~VVf~np~~~l~~~~~~~p~Vi~~~ql~~---~~~~~~~~~~~wi~ 185 (265)
...+++..++++ + .| .++=..||++|...+.-. .+ .++.+|-. |.=.....+.+||+
T Consensus 61 ------~~dR~K~k~ike---q----~P--~ldirfvf~~~~~ki~K~---s~--ttya~Wc~k~g~~~~~~~iP~~Wl~ 120 (138)
T 1m0d_A 61 ------SDDRKKHLLIRE---Q----HP--ELDIRIVFSSSRTKLYKG---SP--TSYGEFCEKHGIKFADKLIPAEWIK 120 (138)
T ss_dssp ------HHHHHHHHHHHH---H----CT--TCCEEEEESCTTSBSSTT---CS--CBHHHHHHHHTCCEEESSCCHHHHH
T ss_pred ------HHHHHHHHHHHH---H----CC--CceEEEEEeccccceecc---CC--CcHHHHHHHcCCceecccCCHHHHh
Confidence 223445544442 2 23 144456688887666543 22 23444422 11113466678877
Q ss_pred ccccC
Q 024593 186 GAFRG 190 (265)
Q Consensus 186 ~~~~~ 190 (265)
..-.+
T Consensus 121 e~~~~ 125 (138)
T 1m0d_A 121 EPKKE 125 (138)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 65444
No 9
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=62.01 E-value=9 Score=35.33 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHhcC----CCc-eEEeeeEeeCCCC--CCccceeEEEEeCCeEEEEEee
Q 024593 35 IFSVAARLEKL----YKG-KAYVGLRIPDPDT--GSRQNIDIVLITKGEAVVISVK 83 (265)
Q Consensus 35 ~~~v~~~L~~l----~~~-~vl~~lrlp~~~~--~~~~EID~Vivt~~gI~VIEVK 83 (265)
|..|...++.. +.- -+-.|+.|..+.+ ....|+|++++..+-+++||+|
T Consensus 255 E~~v~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDV~~~~~n~l~~iECK 310 (385)
T 1xmx_A 255 ETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECK 310 (385)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHhhccCcchhheeeeEEEecCCCCCCCceeEEEEEECCEEEEEEeC
Confidence 55555555543 221 2556776655422 2256999999999999999999
No 10
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=43.07 E-value=16 Score=26.49 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.5
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==+|+|++|+.+.|-+++|..
T Consensus 14 ~k~V~V~l~~gr~~~G~L~~~D~ 36 (91)
T 1d3b_B 14 DYRMRCILQDGRIFIGTFKAFDK 36 (91)
T ss_dssp TSEEEEEETTCCEEEEEEEECCT
T ss_pred CCcEEEEECCCeEEEEEEEEECC
Confidence 34457899999999999999876
No 11
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=42.40 E-value=17 Score=25.51 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.4
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==+|+|++|+.+.|-+.+|..
T Consensus 14 ~k~V~V~Lk~gr~~~G~L~~~D~ 36 (76)
T 3s6n_G 14 DKKLSLKLNGGRHVQGILRGFDP 36 (76)
T ss_dssp CCEEEEEETTTEEEEEEEEEECT
T ss_pred CCeEEEEECCCcEEEEEEEEECC
Confidence 44457999999999999999865
No 12
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=40.41 E-value=19 Score=25.04 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=20.6
Q ss_pred cCCceeEEEEecCeEEeeeeeeccC
Q 024593 209 TAPIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 209 ~~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
.++.==+|+|++|+.+.|-+.+|..
T Consensus 12 ~~~~~V~V~l~~g~~~~G~L~~~D~ 36 (75)
T 1h64_1 12 SLDKDVLVILKKGFEFRGRLIGYDI 36 (75)
T ss_dssp TTTSEEEEEETTSEEEEEEEEEECT
T ss_pred HCCCEEEEEECCCCEEEEEEEEEeC
Confidence 3344557899999999999999986
No 13
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=38.72 E-value=21 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.5
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==+|+|++|+.+.|-+.+|..
T Consensus 19 ~~~V~V~l~~g~~~~G~L~~~D~ 41 (81)
T 1th7_A 19 NNLVLVKLKGNKEVRGMLRSYDQ 41 (81)
T ss_dssp TSEEEEEETTTEEEEEEEEEECT
T ss_pred CCeEEEEEcCCcEEEEEEEEEcC
Confidence 34457899999999999999876
No 14
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=36.57 E-value=22 Score=24.76 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=21.0
Q ss_pred cCCceeEEEEecCeEEeeeeeeccC
Q 024593 209 TAPIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 209 ~~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
.++.==+|+|++|+.+.|-+.+|..
T Consensus 12 ~~~~~V~V~L~~g~~~~G~L~~~D~ 36 (77)
T 1i4k_A 12 SLKSPVIVRLKGGREFRGTLDGYDI 36 (77)
T ss_dssp TTTSEEEEEETTSCEEEEEEEEECT
T ss_pred hCCCEEEEEEcCCCEEEEEEEEEcC
Confidence 3455567999999999999999986
No 15
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=36.47 E-value=23 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.4
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==+|+|++|+.+.|-+.+|..
T Consensus 25 ~~~V~V~Lk~g~~~~G~L~~~D~ 47 (83)
T 1mgq_A 25 NSPVIIKLKGDREFRGVLKSFDL 47 (83)
T ss_dssp TSEEEEEETTTEEEEEEEEEECT
T ss_pred CCEEEEEEcCCcEEEEEEEEECC
Confidence 33457899999999999999976
No 16
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=35.89 E-value=60 Score=28.33 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCC-eEEEEEeeccceeEEECCCCcEEEEecCCcccccCCCh
Q 024593 35 IFSVAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKG-EAVVISVKNLSGFVTVNADGSWVCEAVGRHRSAAHPDP 113 (265)
Q Consensus 35 ~~~v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~-gI~VIEVKn~sG~I~~~~~~~W~q~~~~~~~~~~~~nP 113 (265)
...+.+.++.+..+..+-+-..+.. .+ .||++..... ..++||+|... . -++.
T Consensus 131 q~~L~~n~~~Lg~G~~~v~rEy~t~--~G--~IDlL~~D~~g~~VvIElKr~~-----------------~-----~~e~ 184 (251)
T 2vld_A 131 ANLIFENPRVIEEGFKPIYREKPIR--HG--IVDVMGVDKDGNIVVLELKRRK-----------------A-----DLHA 184 (251)
T ss_dssp HHHHHHCGGGTCTTCEEEEEEEEET--TE--EEEEEEECTTSCEEEEEECSSC-----------------B-----CHHH
T ss_pred HHHHHhCHHHhCCCcEEEEEEeccC--CC--ceeEEEECCCCCEEEEEEeecc-----------------C-----CHhH
Confidence 4555555555655555555555554 22 8999999975 79999999311 1 2467
Q ss_pred HHHHHHHHHHHHHHH
Q 024593 114 VAEAKKQASILESYL 128 (265)
Q Consensus 114 v~Q~~r~~~~L~~~L 128 (265)
+.|..+=..++.+.+
T Consensus 185 V~QL~~Yl~~l~~~~ 199 (251)
T 2vld_A 185 VSQMKRYVDSLKEEY 199 (251)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 888887777776654
No 17
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=35.11 E-value=68 Score=25.96 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHhcCCCceEEeeeEeeCCCCCCccceeEEEEeCC-eEEEEEeec
Q 024593 38 VAARLEKLYKGKAYVGLRIPDPDTGSRQNIDIVLITKG-EAVVISVKN 84 (265)
Q Consensus 38 v~~~L~~l~~~~vl~~lrlp~~~~~~~~EID~Vivt~~-gI~VIEVKn 84 (265)
|.+-|... +.-++.-+.+|+ +. +.|++-+.++ .|.+||+|.
T Consensus 20 v~R~l~~~-g~~~l~E~~l~~---Gr--RaDv~al~~kg~i~ivEiKs 61 (153)
T 3dnx_A 20 VARHLRAH-GFVSVEEFVPAR---GL--RVDVMGLGPKGEIWVIECKS 61 (153)
T ss_dssp HHHHHHHT-TCEEEEEECSST---TC--CEEEEEECTTCCEEEEEECS
T ss_pred HHHHHHHC-CCcEEEEEccCC---Cc--eeeEEEECCCCcEEEEEEEc
Confidence 44555544 455666666665 23 8999999997 789999993
No 18
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=32.77 E-value=26 Score=24.77 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=22.2
Q ss_pred HhccCCceeEEEEecCeEEeeeeeeccC
Q 024593 206 ILSTAPIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 206 ~L~~~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+-+.++.==+|+|++|+.+.|-+.+|..
T Consensus 16 L~~~~~~~V~V~l~~g~~~~G~L~~~D~ 43 (81)
T 1i8f_A 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQ 43 (81)
T ss_dssp HHTTTTSEEEEEEGGGEEEEEEEEEECT
T ss_pred HHHHCCCeEEEEEcCCcEEEEEEEEEcC
Confidence 3344455668899999999999999875
No 19
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=31.13 E-value=24 Score=24.58 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=19.5
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==+|+|++|+.+.|-+.+|..
T Consensus 14 ~k~V~V~Lk~g~~~~G~L~~~D~ 36 (75)
T 4emk_B 14 GKKVLIRLSSGVDYKGILSCLDG 36 (75)
T ss_dssp TSEEEEECTTSCEEEEEEEEECT
T ss_pred CCeEEEEEcCCcEEEEEEEEEcC
Confidence 44457899999999999999976
No 20
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=30.21 E-value=32 Score=23.93 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.8
Q ss_pred cCCceeEEEEecC-eEEeeeeeeccC
Q 024593 209 TAPIWDRLEVKGN-KYVLGEFLEFKG 233 (265)
Q Consensus 209 ~~~twdrv~l~gG-~~~~Gd~~~~~~ 233 (265)
.++.==+|+|++| +.+.|-+.+|..
T Consensus 13 ~~~~~v~V~lk~g~~~~~G~L~~~D~ 38 (77)
T 1ljo_A 13 MVGKIIRVEMKGEENQLVGKLEGVDD 38 (77)
T ss_dssp TTTSEEEEEETTCSSEEEEEEEEECT
T ss_pred HCCCEEEEEEeCCCEEEEEEEEEECC
Confidence 3455568899999 999999999986
No 21
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=29.97 E-value=33 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.5
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==.|+|++|+.+.|-+.+|.+
T Consensus 15 g~~V~VeLk~g~~~~G~L~~~D~ 37 (75)
T 1d3b_A 15 GHIVTCETNTGEVYRGKLIEAED 37 (75)
T ss_dssp TSEEEEEETTSCEEEEEEEEECT
T ss_pred CCEEEEEECCCcEEEEEEEEEcc
Confidence 44456899999999999999886
No 22
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=29.69 E-value=29 Score=25.51 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=21.2
Q ss_pred ccCCceeEEEEecCeEEeeeeeeccC
Q 024593 208 STAPIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 208 ~~~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.++.==+|.|++|+.+.|-+++|..
T Consensus 17 ~~i~k~V~V~Lk~gr~~~G~L~~fD~ 42 (96)
T 3bw1_A 17 LNLDERVYIKLRGARTLVGTLQAFDS 42 (96)
T ss_dssp GGTTSEEEEEEGGGCEEEEEEEEECT
T ss_pred HHCCCeEEEEECCCcEEEEEEEEECC
Confidence 34455568899999999999999875
No 23
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=29.29 E-value=24 Score=20.62 Aligned_cols=11 Identities=55% Similarity=1.105 Sum_probs=8.4
Q ss_pred hhhhHHHHHHH
Q 024593 2 WVQILCGLVIY 12 (265)
Q Consensus 2 ~~~i~~~~~~~ 12 (265)
|++|.|.|++-
T Consensus 9 wlai~c~LLfs 19 (30)
T 1z65_A 9 WVAILCMLLAS 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887653
No 24
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=29.02 E-value=38 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.3
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
..==+|+|++|+.+.|-+++|..
T Consensus 30 ~k~V~V~Lk~gr~~~G~L~gfD~ 52 (94)
T 4emk_A 30 GSNLWVIMKSEREFAGTLVGFDD 52 (94)
T ss_dssp TSEEEEEESSSEEEEEEEEEECT
T ss_pred CCeEEEEECCCcEEEEEEEEEcc
Confidence 33456899999999999999975
No 25
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=28.77 E-value=37 Score=24.84 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCceeEEEEecCeEEeeeeeeccC
Q 024593 210 APIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 210 ~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
++.==+|+|++|+.+.|-+++|..
T Consensus 18 ~~~~V~V~l~~gr~~~G~L~~~D~ 41 (93)
T 4emg_A 18 LDEIVYVKLRGDRELNGRLHAYDE 41 (93)
T ss_dssp TTSEEEEEETTTEEEEEEEEEECT
T ss_pred CCCEEEEEECCCcEEEEEEEEECC
Confidence 456668899999999999999876
No 26
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=28.57 E-value=31 Score=26.30 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=20.8
Q ss_pred HHHHHHhccCCceeEEEEecCeEEeeeeeeccC
Q 024593 201 QQLNFILSTAPIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 201 ~~~~~~L~~~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.+...-+.+..==+|.|++|+.+.|-+++|..
T Consensus 23 e~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~ 55 (113)
T 4emk_C 23 ESILDLSRYQDQRIQATFTGGRQITGILKGFDQ 55 (113)
T ss_dssp ---------CCSEEEEEETTSCEEEEEEEEECT
T ss_pred chHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcC
Confidence 334444445566678999999999999998865
No 27
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=28.39 E-value=35 Score=24.50 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=19.4
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==.|+|++|+.+.|-+.+|..
T Consensus 16 ~k~V~V~Lk~g~~~~G~L~~~D~ 38 (86)
T 3s6n_F 16 GKPVMVKLKWGMEYKGYLVSVDG 38 (86)
T ss_dssp TSEEEEEETTSCEEEEEEEEECT
T ss_pred CCeEEEEEcCCeEEEEEEEEEcC
Confidence 33456899999999999999876
No 28
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=27.80 E-value=43 Score=24.51 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=21.4
Q ss_pred cCCceeEEEEecC-eEEeeeeeeccC
Q 024593 209 TAPIWDRLEVKGN-KYVLGEFLEFKG 233 (265)
Q Consensus 209 ~~~twdrv~l~gG-~~~~Gd~~~~~~ 233 (265)
.++.==.|+|++| +.+.|-+.+|..
T Consensus 29 ~i~k~V~V~Lk~g~~~~~G~L~~~D~ 54 (93)
T 1n9r_A 29 LVNHRVGVKLKFNSTEYRGTLVSTDN 54 (93)
T ss_dssp GTTSEEEEEESSTTEEEEEEEEECCT
T ss_pred hCCCEEEEEEcCCCEEEEEEEEEEcc
Confidence 3466678999999 999999999986
No 29
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=25.44 E-value=36 Score=26.13 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.3
Q ss_pred eeEEEEecCeEEeeeeeeccC
Q 024593 213 WDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 213 wdrv~l~gG~~~~Gd~~~~~~ 233 (265)
==+|+|++|+.+.|-+++|..
T Consensus 40 ~V~V~Lk~Gr~~~G~L~~fD~ 60 (121)
T 2fwk_A 40 RIYVVMKGDKEFSGVLRGFDE 60 (121)
T ss_dssp BCEEEETTTEEECCEEEEECT
T ss_pred eEEEEECCCcEEEEEEEEEcc
Confidence 356999999999999998865
No 30
>2inb_A Hypothetical protein; ZP_00107633.1, structural genomics, PS protein structure initiative, joint center for structural G JCSG; HET: MSE GOL; 1.60A {Nostoc punctiforme} SCOP: c.52.1.32 PDB: 2okf_A*
Probab=24.15 E-value=49 Score=26.39 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCceEEee-eEeeCCCCCCccceeE----EEEeC--CeEEEEEeecc
Q 024593 36 FSVAARLEKLYKGKAYVG-LRIPDPDTGSRQNIDI----VLITK--GEAVVISVKNL 85 (265)
Q Consensus 36 ~~v~~~L~~l~~~~vl~~-lrlp~~~~~~~~EID~----Vivt~--~gI~VIEVKn~ 85 (265)
..|.++|.+ +||.|=+| ++|...+... .||+ ++... +.=+.||+|.+
T Consensus 10 ~~vk~aL~k-dgW~It~DP~~l~~~~~~~--~iDLgAek~iaAer~~~kIAVEIKsF 63 (140)
T 2inb_A 10 QVVKIALEK-DGWQITNDPLTISVGGVNL--SIDLGAEKLIAAEREGEKIAVEVKSF 63 (140)
T ss_dssp HHHHHHHHH-TTCEEEESSCCCEETTEEC---------CCEEEEETTEEEEEEECCS
T ss_pred HHHHHHHHh-cCCEeeCCCcEEEECcEEE--EeccchHHHHHhhhcCceEEEEEecc
Confidence 457788887 78888888 7777664433 8886 44443 36788999954
No 31
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=22.84 E-value=50 Score=24.80 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=19.6
Q ss_pred CceeEEEEecCeEEeeeeeeccC
Q 024593 211 PIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 211 ~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
+.==.|+|++|+.+.|-+.+|..
T Consensus 26 gk~V~V~Lk~G~~~~G~L~~~D~ 48 (105)
T 4emh_A 26 GRPILVELKNGETFNGHLENCDN 48 (105)
T ss_dssp CCEEEEEETTSCEEEEEEEEECT
T ss_pred CCEEEEEECCCCEEEEEEEEEcC
Confidence 44457899999999999999876
No 32
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=21.78 E-value=53 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.9
Q ss_pred ceeEEEEecCeEEeeeeeeccC
Q 024593 212 IWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 212 twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
.==+|+|+||+.+.|-+++|..
T Consensus 40 k~V~V~Lk~gr~~~G~L~~fD~ 61 (118)
T 1b34_B 40 TQVLINCRNNKKLLGRVKAFDR 61 (118)
T ss_dssp CEEEEEETTSCEEEEEEEEECT
T ss_pred cEEEEEECCCcEEEEEEEEeCC
Confidence 3457899999999999998876
No 33
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=20.30 E-value=55 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.4
Q ss_pred cCCceeEEEEecCeEEeeeeeeccC
Q 024593 209 TAPIWDRLEVKGNKYVLGEFLEFKG 233 (265)
Q Consensus 209 ~~~twdrv~l~gG~~~~Gd~~~~~~ 233 (265)
-+..==+|+|++|+.+.|-|++|..
T Consensus 12 lIdKrV~V~LkdGRel~GtLkgFDq 36 (231)
T 3pgw_B 12 HIDYRMRCILQDGRIFIGTFKAFDK 36 (231)
T ss_pred hcCCeEEEEECCCcEEEEEEEEEcc
Confidence 3444558999999999999998875
Done!