Query 024594
Match_columns 265
No_of_seqs 256 out of 921
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:59:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 2.5E-18 8.5E-23 125.7 4.6 54 204-260 7-60 (63)
2 1gnf_A Transcription factor GA 99.7 2.6E-18 8.8E-23 118.4 4.1 43 204-249 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.7 2.9E-18 9.8E-23 116.6 3.4 41 205-248 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.7 3.7E-18 1.3E-22 125.9 4.0 55 204-261 9-63 (66)
5 2kae_A GATA-type transcription 99.6 2E-16 6.7E-21 118.1 2.5 47 204-252 8-54 (71)
6 4hc9_A Trans-acting T-cell-spe 99.6 2.6E-15 8.9E-20 121.5 5.4 55 204-261 59-113 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 2.8E-13 9.7E-18 109.5 4.7 49 204-255 5-53 (115)
8 3ogk_Q JAZ1 incomplete degron 97.9 3.3E-06 1.1E-10 49.3 1.3 22 138-160 1-22 (22)
9 3ogl_Q JAZ1 incomplete degron 97.7 1.7E-05 5.9E-10 45.7 2.1 18 136-153 4-21 (21)
10 1pft_A TFIIB, PFTFIIBN; N-term 55.1 1.8 6.3E-05 28.7 -0.7 34 204-242 5-38 (50)
11 2owa_A Arfgap-like finger doma 54.9 8.1 0.00028 31.5 3.0 37 204-244 36-72 (138)
12 2yrk_A Zinc finger homeobox pr 54.6 2.6 8.9E-05 29.5 0.0 24 222-245 7-30 (55)
13 2iqj_A Stromal membrane-associ 52.7 8.6 0.00029 31.2 2.8 37 204-244 27-63 (134)
14 2zjr_Z 50S ribosomal protein L 51.4 3.3 0.00011 29.3 0.1 24 204-239 30-53 (60)
15 2crw_A ARF GAP 3, ADP-ribosyla 50.2 9.4 0.00032 31.6 2.7 37 204-244 29-65 (149)
16 1dl6_A Transcription factor II 49.6 8.5 0.00029 26.7 2.0 34 204-242 11-44 (58)
17 3v2d_5 50S ribosomal protein L 48.6 3 0.0001 29.5 -0.5 25 204-240 30-54 (60)
18 1ovx_A ATP-dependent CLP prote 48.5 8 0.00027 28.0 1.8 32 205-238 19-50 (67)
19 2crr_A Stromal membrane-associ 47.0 15 0.0005 30.0 3.4 37 204-244 29-65 (141)
20 2olm_A Nucleoporin-like protei 46.8 11 0.00036 30.8 2.5 36 204-243 25-60 (140)
21 3cw2_K Translation initiation 46.6 7.1 0.00024 31.9 1.4 30 205-237 104-133 (139)
22 2p57_A GTPase-activating prote 45.2 11 0.00037 31.1 2.3 37 204-244 37-73 (144)
23 3sub_A ADP-ribosylation factor 44.4 15 0.0005 31.0 3.0 37 204-244 22-58 (163)
24 2ds5_A CLPX, ATP-dependent CLP 44.4 11 0.00036 25.8 1.8 31 205-237 12-42 (51)
25 2d74_B Translation initiation 42.5 8.1 0.00028 32.0 1.1 30 205-237 105-134 (148)
26 3dwd_A ADP-ribosylation factor 41.4 15 0.00052 30.3 2.7 37 204-244 38-74 (147)
27 1k81_A EIF-2-beta, probable tr 41.4 3.5 0.00012 26.1 -0.9 29 206-237 2-30 (36)
28 1nee_A EIF-2-beta, probable tr 39.7 7.6 0.00026 31.7 0.6 29 205-236 103-131 (138)
29 2jrb_A ORF 1 protein; RNA bind 39.3 22 0.00077 27.0 3.1 25 74-100 46-70 (88)
30 3o47_A ADP-ribosylation factor 38.6 14 0.00048 33.1 2.2 37 204-244 37-73 (329)
31 3h0g_L DNA-directed RNA polyme 36.1 11 0.00038 26.9 0.9 42 197-245 14-55 (63)
32 2ctu_A Zinc finger protein 483 33.1 18 0.0006 23.6 1.5 40 204-246 18-57 (73)
33 2b0o_E UPLC1; arfgap, structur 33.0 23 0.0008 30.9 2.7 36 204-243 42-77 (301)
34 2e29_A ATP-dependent RNA helic 32.6 14 0.00047 28.0 1.0 28 75-103 54-81 (92)
35 1qyp_A RNA polymerase II; tran 31.2 4.5 0.00015 27.6 -1.8 37 204-240 15-55 (57)
36 2k1p_A Zinc finger RAN-binding 31.0 14 0.00049 22.7 0.7 23 204-236 6-28 (33)
37 2lk0_A RNA-binding protein 5; 30.8 11 0.00038 23.0 0.1 24 203-236 4-27 (32)
38 3k7a_M Transcription initiatio 30.7 15 0.00051 33.6 1.0 11 228-238 42-52 (345)
39 2lma_A THP5 peptide; CD4+, imm 29.2 5.4 0.00018 23.3 -1.4 15 11-25 1-15 (26)
40 3soo_A LINE-1 type transposase 27.6 28 0.00095 26.4 1.9 27 72-100 44-70 (88)
41 2lcq_A Putative toxin VAPC6; P 27.1 10 0.00035 30.8 -0.6 29 204-240 132-160 (165)
42 3cng_A Nudix hydrolase; struct 26.8 17 0.00058 29.5 0.6 30 204-235 3-32 (189)
43 1lko_A Rubrerythrin all-iron(I 26.8 11 0.00038 31.8 -0.5 26 204-237 155-180 (191)
44 2g2k_A EIF-5, eukaryotic trans 26.5 11 0.00038 31.9 -0.6 32 205-238 97-129 (170)
45 3pwf_A Rubrerythrin; non heme 26.5 26 0.0009 29.1 1.7 25 203-236 137-161 (170)
46 3jue_A Arfgap with coiled-coil 25.6 36 0.0012 31.0 2.7 36 204-243 45-80 (368)
47 2lvu_A Zinc finger and BTB dom 31.1 15 0.00051 19.0 0.0 17 229-245 3-19 (26)
48 1dcq_A PYK2-associated protein 25.1 39 0.0013 29.0 2.7 37 204-244 17-53 (278)
49 2yrc_A Protein transport prote 24.2 24 0.00083 24.6 0.9 32 204-237 9-42 (59)
50 2j9u_B VPS36, vacuolar protein 23.7 18 0.00062 26.8 0.2 34 203-237 16-49 (76)
51 3lju_X ARF-GAP with dual PH do 23.6 30 0.001 32.1 1.7 34 204-241 34-67 (386)
52 1pqv_S STP-alpha, transcriptio 23.1 14 0.00049 33.5 -0.6 36 204-239 268-307 (309)
53 3po3_S Transcription elongatio 22.1 24 0.00081 29.7 0.6 36 204-239 137-176 (178)
54 2kdx_A HYPA, hydrogenase/ureas 22.0 24 0.00082 27.3 0.6 26 204-237 73-99 (119)
55 3j20_Y 30S ribosomal protein S 20.9 11 0.00036 25.5 -1.5 31 202-238 17-47 (50)
56 2e9h_A EIF-5, eukaryotic trans 20.7 18 0.00061 30.2 -0.4 32 205-238 104-136 (157)
57 3mhs_E SAGA-associated factor 20.3 19 0.00065 27.8 -0.3 12 228-239 75-86 (96)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.72 E-value=2.5e-18 Score=125.69 Aligned_cols=54 Identities=30% Similarity=0.540 Sum_probs=48.2
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCccccccc
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~ 260 (265)
...|+||+++ .||+||+||+|. +|||||||+|++++.+||++..+..|+.+...
T Consensus 7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 5789999998 599999999997 99999999999999999999988888877654
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.72 E-value=2.6e-18 Score=118.38 Aligned_cols=43 Identities=44% Similarity=0.832 Sum_probs=40.0
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~ 249 (265)
...|+||+++ +||+||+||+|. +|||||||||++++++||++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 4689999998 599999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.71 E-value=2.9e-18 Score=116.59 Aligned_cols=41 Identities=44% Similarity=0.878 Sum_probs=38.5
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCC
Q 024594 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~ 248 (265)
..|++|+++ .||+||+||+|. +|||||||+|++++++||++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 579999998 599999999996 99999999999999999986
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.71 E-value=3.7e-18 Score=125.86 Aligned_cols=55 Identities=35% Similarity=0.617 Sum_probs=49.8
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCcccccccc
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~ 261 (265)
...|+||+++ .||+||+||+|. +|||||||||++++++||++.....|+.+....
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence 5799999998 599999999996 999999999999999999999988888776543
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.60 E-value=2e-16 Score=118.14 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=40.4
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR 252 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~ 252 (265)
...|+||+++ .||+||+||.+..+|||||||||++++++||++....
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence 5799999998 5999999655445999999999999999999876654
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.55 E-value=2.6e-15 Score=121.52 Aligned_cols=55 Identities=29% Similarity=0.550 Sum_probs=48.6
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCcccccccc
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~ 261 (265)
...|+||+++ .||+||+||+| .+|||||||||++++.+|+++..+..|..+...+
T Consensus 59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 4799999998 59999999999 8999999999999999999999998888776543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.37 E-value=2.8e-13 Score=109.54 Aligned_cols=49 Identities=43% Similarity=0.769 Sum_probs=42.5
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCcc
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNIC 255 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~ 255 (265)
.+.|.||+++ .||+||+||+| .+|||||||||++++.++++.+.+....
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~ 53 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLS 53 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCC
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccccccccccccccc
Confidence 5799999998 59999999999 7999999999999999999876655433
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.89 E-value=3.3e-06 Score=49.28 Aligned_cols=22 Identities=59% Similarity=0.709 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhccccccccc....
Q 024594 138 RIASLVRFREKRKERSFEKKIRY.... 160 (265)
Q Consensus 138 R~~sl~r~~~Krk~r~~~k~i~Y.... 160 (265)
|++||+||+||||+|..++ .+|
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6899999999999987665 566
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=97.69 E-value=1.7e-05 Score=45.67 Aligned_cols=18 Identities=61% Similarity=0.695 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhhcc.....
Q 024594 136 SQRIASLVRFREKRKERS..... 153 (265)
Q Consensus 136 ~~R~~sl~r~~~Krk~r~..... 153 (265)
.+|++||+||+||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 379999999999999873
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.11 E-value=1.8 Score=28.75 Aligned_cols=34 Identities=18% Similarity=0.570 Sum_probs=22.5
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~ 242 (265)
...|.+|+.+ ++-. .+......|..||+-|..+.
T Consensus 5 ~~~CP~C~~~----~l~~-d~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACESA----ELIY-DPERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSCC----CEEE-ETTTTEEEESSSCCBCCCCC
T ss_pred cEeCcCCCCc----ceEE-cCCCCeEECcccCCcccccc
Confidence 3579999862 3333 34433789999999886544
No 11
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=54.86 E-value=8.1 Score=31.54 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=32.2
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..||.. -|.|=.-..| ..||-.|.-..+.-|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 5799999986 7999999999 89999999888877754
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=54.64 E-value=2.6 Score=29.53 Aligned_cols=24 Identities=25% Similarity=0.744 Sum_probs=18.0
Q ss_pred cCCCCCcccchhhhHHHHhcCCCC
Q 024594 222 RGPAGPRTLCNACGLMWANKGTLR 245 (265)
Q Consensus 222 ~Gp~g~~~LCNaCGl~~~~~~~~r 245 (265)
.+|+||++-|.-||..|.-+-.++
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~slq 30 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLSIR 30 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSCHH
T ss_pred CCCCCCCccccccCcccccccchh
Confidence 478888888999998887654443
No 13
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=52.72 E-value=8.6 Score=31.16 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=32.1
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..||.. -|.|=.-..| ..||-.|.-..+.-|.+
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 6799999986 7999999999 89999998888877753
No 14
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=51.42 E-value=3.3 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.632 Sum_probs=17.8
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHH
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWA 239 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~ 239 (265)
...|.+||... -+..+|-.|| +|+
T Consensus 30 l~~c~~cG~~~-----------~pH~vc~~CG-~Y~ 53 (60)
T 2zjr_Z 30 LTECPQCHGKK-----------LSHHICPNCG-YYD 53 (60)
T ss_dssp CEECTTTCCEE-----------CTTBCCTTTC-BSS
T ss_pred ceECCCCCCEe-----------CCceEcCCCC-cCC
Confidence 46899999752 2478999999 443
No 15
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.25 E-value=9.4 Score=31.59 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=32.2
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..|+.. -|.|=.-..| ..||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 5799999986 7999999999 89999998888887754
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.63 E-value=8.5 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=24.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~ 242 (265)
...|..|+.+ +....-..| .+.|..||+-+..+.
T Consensus 11 ~~~Cp~C~~~----~lv~D~~~g-e~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 11 RVTCPNHPDA----ILVEDYRAG-DMICPECGLVVGDRV 44 (58)
T ss_dssp CCSBTTBSSS----CCEECSSSC-CEECTTTCCEECCSC
T ss_pred cccCcCCCCC----ceeEeCCCC-eEEeCCCCCEEeccc
Confidence 3579999863 355555556 799999999887654
No 17
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=48.56 E-value=3 Score=29.53 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=18.2
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHh
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~ 240 (265)
...|.+||... -+..+|-.|| +|+-
T Consensus 30 l~~c~~cGe~~-----------~~H~vc~~CG-~Y~g 54 (60)
T 3v2d_5 30 LVPCPECKAMK-----------PPHTVCPECG-YYAG 54 (60)
T ss_dssp CEECTTTCCEE-----------CTTSCCTTTC-EETT
T ss_pred eeECCCCCCee-----------cceEEcCCCC-cCCC
Confidence 46899999753 2478999999 4443
No 18
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=48.48 E-value=8 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=22.7
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHHH
Q 024594 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~ 238 (265)
.+|+-||.+.......=.|| | ...||-|=...
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 58999999854444555576 3 58999996443
No 19
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.96 E-value=15 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=31.8
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..||.. -|.|=.-..| ..||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 5799999986 7999999999 89999998888877753
No 20
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=46.77 E-value=11 Score=30.82 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=30.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~ 243 (265)
+..|..||.. -|.|=.-..| ..||-.|.-..+.-|+
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 5799999986 7999999999 8999999887776654
No 21
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=46.62 E-value=7.1 Score=31.94 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHH
Q 024594 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
-.|..|+-.. |-+-+++- ---.-|+|||-.
T Consensus 104 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKK-SWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCS-TTTSSCCC----
T ss_pred eECCCCCCcC--cEEEEeCC-eEEEEecCCCCC
Confidence 5799999984 87888652 235789999964
No 22
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=45.18 E-value=11 Score=31.08 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=32.1
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..||.. -|.|=.-..| ..||-.|.-..+.-|+.
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 5799999986 7999999999 89999999888887753
No 23
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=44.43 E-value=15 Score=30.98 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.7
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
...|..|+.. -|.|=.-.-| ..||-.|.-..+.-|++
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 6799999986 7999999999 89999998777776653
No 24
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=44.41 E-value=11 Score=25.82 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.0
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHH
Q 024594 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
.+|+-||.+.......=.|| | ...||-|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 58999999854444555576 3 5899999543
No 25
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=42.50 E-value=8.1 Score=31.98 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=21.4
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHH
Q 024594 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
-.|..|+... |-+-+++- ---.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~r-~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRDR-FHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSSS-SBCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeCC-EEEEEecCCCCC
Confidence 4799999874 77777642 234789999853
No 26
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=41.43 E-value=15 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..|+.. -|.|=.-.-| ..||-.|.-..+.-|..
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 5799999986 7999999999 89999999888876653
No 27
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=41.39 E-value=3.5 Score=26.11 Aligned_cols=29 Identities=34% Similarity=0.843 Sum_probs=19.0
Q ss_pred cccccccccCCCCccccCCCCCcccchhhhHH
Q 024594 206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 206 ~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
.|..|+-.+ |-+-+++-. --.-|+|||-.
T Consensus 2 lC~~C~~pe--T~l~~~~~~-~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPD--TKIIKEGRV-HLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCE--EEEEEETTE-EEEEEETTTEE
T ss_pred CCcCCCCCC--cEEEEeCCc-EEEEhhcCCCc
Confidence 488898874 667775411 12459999964
No 28
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=39.75 E-value=7.6 Score=31.74 Aligned_cols=29 Identities=34% Similarity=0.733 Sum_probs=21.0
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhH
Q 024594 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl 236 (265)
-.|..|+-.. |-+-+++- ---.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGR-ISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETT-TTEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCC-eEEEEccCCCC
Confidence 4799999884 77887642 22478999984
No 29
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=39.31 E-value=22 Score=26.96 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.3
Q ss_pred CcceeEEeccEEEEeCCCChhHHHHHH
Q 024594 74 TSELTVAYEGEVYVFPAVTPHKVQALL 100 (265)
Q Consensus 74 ~aQLTIfY~G~V~Vfddvp~eKaq~Im 100 (265)
++-|+++|+|++..|.| .+|+++.+
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHHH
Confidence 67899999999999986 46666654
No 30
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=38.59 E-value=14 Score=33.10 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.8
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..||.. .|.|=.-.-| ..||-.|.-..+.-|.+
T Consensus 37 n~~c~dc~~~---~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 37 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 5699999986 8999999999 89999998888876654
No 31
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.11 E-value=11 Score=26.89 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=25.2
Q ss_pred CCCCccccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCC
Q 024594 197 SAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245 (265)
Q Consensus 197 ~~~~~~~~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r 245 (265)
.+.+....-.|..||... .. + .+...-|.-||-+.-.|.+.+
T Consensus 14 ~~~~~~v~Y~C~~Cg~~~--~l--~---~~~~iRC~~CG~RILyK~Rt~ 55 (63)
T 3h0g_L 14 PPRPATMIYLCADCGARN--TI--Q---AKEVIRCRECGHRVMYKMRTK 55 (63)
T ss_dssp -----CCCCBCSSSCCBC--CC--C---SSSCCCCSSSCCCCCBCCCCC
T ss_pred CCCCCCeEEECCCCCCee--ec--C---CCCceECCCCCcEEEEEecCC
Confidence 334445578999999863 21 2 234678999998766655443
No 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.06 E-value=18 Score=23.63 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=28.2
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~ 246 (265)
...|..|+..-.....++. .....|..||..|.....+..
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 4689999976433444444 446899999999987766554
No 33
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=32.97 E-value=23 Score=30.89 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=30.3
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~ 243 (265)
+..|..||.. -|.|-.-.-| ..+|-.|--..+.-+.
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 5799999986 7999999999 8999999766666554
No 34
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=32.61 E-value=14 Score=28.03 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=25.1
Q ss_pred cceeEEeccEEEEeCCCChhHHHHHHHHh
Q 024594 75 SELTVAYEGEVYVFPAVTPHKVQALLLLL 103 (265)
Q Consensus 75 aQLTIfY~G~V~Vfddvp~eKaq~Im~la 103 (265)
..||+.=+++-.||| ||.|.+++|+...
T Consensus 54 ~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 54 TRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp EEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred CeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 578999999999999 9999999999764
No 35
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=31.25 E-value=4.5 Score=27.63 Aligned_cols=37 Identities=24% Similarity=0.607 Sum_probs=25.7
Q ss_pred cccccccccccCC--CCccccCCCCCc--ccchhhhHHHHh
Q 024594 204 SRICQHCGISEKL--TPAMRRGPAGPR--TLCNACGLMWAN 240 (265)
Q Consensus 204 ~~~C~~C~~t~~~--Tp~wR~Gp~g~~--~LCNaCGl~~~~ 240 (265)
...|..||-.... +-+||...++.. ..|..||-.|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 4689999975311 337888776643 589999988754
No 36
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.99 E-value=14 Score=22.67 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=16.7
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhH
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl 236 (265)
.|.|..|+.. .-.|| +-||.||.
T Consensus 6 DW~C~~C~~~---Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 6 DWQCKTCSNV---NWARR-------SECNMCNT 28 (33)
T ss_dssp SCBCSSSCCB---CCTTC-------SBCSSSCC
T ss_pred CcccCCCCCc---ccccc-------ccccccCC
Confidence 6899999975 44444 67888874
No 37
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=30.82 E-value=11 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.646 Sum_probs=16.5
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhH
Q 024594 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (265)
Q Consensus 203 ~~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl 236 (265)
..|.|..|+.. .-.+ +..|+.||.
T Consensus 4 gDW~C~~C~~~---Nfa~-------r~~C~~C~~ 27 (32)
T 2lk0_A 4 EDWLCNKCCLN---NFRK-------RLKCFRCGA 27 (32)
T ss_dssp SEEECTTTCCE---EETT-------CCBCTTTCC
T ss_pred CCCCcCcCcCC---cChh-------cceecCCCC
Confidence 47899999875 3333 367888874
No 38
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=30.72 E-value=15 Score=33.60 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=5.1
Q ss_pred cccchhhhHHH
Q 024594 228 RTLCNACGLMW 238 (265)
Q Consensus 228 ~~LCNaCGl~~ 238 (265)
.+.|..||+-.
T Consensus 42 ~~vC~~CG~Vl 52 (345)
T 3k7a_M 42 DVVCALCGLVL 52 (345)
T ss_dssp SCCCSSSCCCC
T ss_pred CEecCCCCeEc
Confidence 44455555443
No 39
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=29.21 E-value=5.4 Score=23.34 Aligned_cols=15 Identities=47% Similarity=0.640 Sum_probs=12.5
Q ss_pred CCCCcCcCCCCcccc
Q 024594 11 ARPYIDTEEHDVAQT 25 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~ 25 (265)
||||+.+|--|+|.+
T Consensus 1 wrpylqteyydvmtv 15 (26)
T 2lma_A 1 WRPYLQTEYYDVMTV 15 (26)
T ss_dssp CCTTHHHHHHTTSTT
T ss_pred CCccccceeeeeEEE
Confidence 889988888888854
No 40
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=27.64 E-value=28 Score=26.44 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCcceeEEeccEEEEeCCCChhHHHHHH
Q 024594 72 TRTSELTVAYEGEVYVFPAVTPHKVQALL 100 (265)
Q Consensus 72 ~~~aQLTIfY~G~V~Vfddvp~eKaq~Im 100 (265)
.=++.|+++|+|++..|+| .+|.++.+
T Consensus 44 lYPakLsf~~eGeiksF~d--kqkl~eFi 70 (88)
T 3soo_A 44 LCEVXLAFXCDGEIXTFSD--LQSLRXFA 70 (88)
T ss_dssp CCCCCEEEECSSSEEEESS--HHHHHHHH
T ss_pred cccceEEEEecCceeccCC--HHHccchh
Confidence 3468999999999999987 45776654
No 41
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.15 E-value=10 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=20.3
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHh
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~ 240 (265)
..+|..||.. ...+ .+.+.|-.||-..++
T Consensus 132 ~y~C~~Cg~~---~~~~-----~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 132 RYVCIGCGRK---FSTL-----PPGGVCPDCGSKVKL 160 (165)
T ss_dssp CEEESSSCCE---ESSC-----CGGGBCTTTCCBEEE
T ss_pred EEECCCCCCc---ccCC-----CCCCcCCCCCCccee
Confidence 4689999976 2222 435699999987543
No 42
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=26.83 E-value=17 Score=29.48 Aligned_cols=30 Identities=27% Similarity=0.721 Sum_probs=22.0
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhh
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACG 235 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCG 235 (265)
.+.|..||.. .+...-.|..+....|-.||
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCC
Confidence 4689999986 24444456666678999999
No 43
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.76 E-value=11 Score=31.75 Aligned_cols=26 Identities=35% Similarity=0.857 Sum_probs=17.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHH
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
.|+|.+||-.. + |.+-| ..|-.||-.
T Consensus 155 ~~~C~~CG~~~--~-----g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVH--E-----GTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEE--E-----EEECC-SBCTTTCCB
T ss_pred eEEECCCCCEe--e-----CCCCC-CCCCCCcCC
Confidence 69999999863 1 43332 289999863
No 44
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.52 E-value=11 Score=31.90 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=19.3
Q ss_pred ccccccccccCCCCccccCCCC-CcccchhhhHHH
Q 024594 205 RICQHCGISEKLTPAMRRGPAG-PRTLCNACGLMW 238 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~Gp~g-~~~LCNaCGl~~ 238 (265)
-.|..|+-.. |-+-+..-.+ -..-|+|||-..
T Consensus 97 VlC~~C~sPd--T~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPE--TDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSC--EEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCc--cEEEEecCCCEEEEEccccCCcc
Confidence 3688888874 7676631111 135688888543
No 45
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.51 E-value=26 Score=29.09 Aligned_cols=25 Identities=32% Similarity=0.842 Sum_probs=17.3
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhH
Q 024594 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (265)
Q Consensus 203 ~~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl 236 (265)
..|.|.+||-.. . -.-| ..|-.||-
T Consensus 137 ~~~~C~~CG~i~--~---~~~p----~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTA--V---DEAP----EYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEE--E---SCCC----SBCTTTCC
T ss_pred CeeEeCCCCCee--C---CCCC----CCCCCCCC
Confidence 379999999874 1 1222 38999984
No 46
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=25.61 E-value=36 Score=31.05 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=30.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~ 243 (265)
+..|..|+.. -|.|=.-.-| ..||-.|.-..+.-|+
T Consensus 45 n~~c~dc~~~---~p~w~s~~~g-~~~c~~c~~~hr~lg~ 80 (368)
T 3jue_A 45 NAQCCDCREP---APEWASINLG-VTLCIQCSGIHRSLGV 80 (368)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred cCcCCCCCCC---CCCeEEecCC-eEEcHhHHHHHhccCC
Confidence 5799999986 7999999999 8999999877776664
No 47
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.11 E-value=15 Score=19.01 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.0
Q ss_pred ccchhhhHHHHhcCCCC
Q 024594 229 TLCNACGLMWANKGTLR 245 (265)
Q Consensus 229 ~LCNaCGl~~~~~~~~r 245 (265)
..|+-||..|.....+.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46888888887765543
No 48
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=25.10 E-value=39 Score=28.99 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=30.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~ 244 (265)
+..|..||.. -|.|-.-.-| ..+|-.|--..+..|.+
T Consensus 17 n~~c~dc~~~---~p~w~s~~~g-~~~c~~c~~~hr~lg~~ 53 (278)
T 1dcq_A 17 NDVCCDCGAP---DPTWLSTNLG-ILTCIECSGIHRELGVH 53 (278)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEecCC-eEEcHHHHHHHhhcCCC
Confidence 5799999986 7899999999 89999997777776643
No 49
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=24.21 E-value=24 Score=24.56 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.4
Q ss_pred cccccc--cccccCCCCccccCCCCCcccchhhhHH
Q 024594 204 SRICQH--CGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 204 ~~~C~~--C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
..+|.. |++- --|.|+-...|..-.||-|+..
T Consensus 9 pvRC~r~~Cray--lNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRAV--LNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCCB--CCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCeE--ECCceEEECCCCEEEcccCCCc
Confidence 569998 9986 4899999888888999999864
No 50
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.66 E-value=18 Score=26.82 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=22.9
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHH
Q 024594 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (265)
Q Consensus 203 ~~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~ 237 (265)
..|.|..|... ..++.+=.--..+..-|-+||+.
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 37999999965 34555543322556789999975
No 51
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=23.57 E-value=30 Score=32.11 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=28.6
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhc
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~ 241 (265)
+..|..||.. -|.|=.-.-| ..||-.|.-..+.-
T Consensus 34 N~~C~dC~~~---~p~w~s~~~g-~~~C~~Csg~hr~l 67 (386)
T 3lju_X 34 NARCADCGAP---DPDWASYTLG-VFICLSCSGIHRNI 67 (386)
T ss_dssp GSBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTC
T ss_pred CCcCccCCCC---CCCeEEeccc-EEEhhhhchHhhCC
Confidence 5689999986 8999999999 89999998665543
No 52
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=23.06 E-value=14 Score=33.54 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=24.5
Q ss_pred cccccccccccCC--CCccccCCCCCc--ccchhhhHHHH
Q 024594 204 SRICQHCGISEKL--TPAMRRGPAGPR--TLCNACGLMWA 239 (265)
Q Consensus 204 ~~~C~~C~~t~~~--Tp~wR~Gp~g~~--~LCNaCGl~~~ 239 (265)
...|..||-.... .-+-|...+|.. ..|..||-.|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 4589999976311 123466766644 58999999985
No 53
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=22.09 E-value=24 Score=29.70 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=23.5
Q ss_pred cccccccccccCC--CCccccCCCCCc--ccchhhhHHHH
Q 024594 204 SRICQHCGISEKL--TPAMRRGPAGPR--TLCNACGLMWA 239 (265)
Q Consensus 204 ~~~C~~C~~t~~~--Tp~wR~Gp~g~~--~LCNaCGl~~~ 239 (265)
...|..||-..-. .-+-|.+.++.. ..|..||-.|+
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 5689999975311 223355655543 47999999885
No 54
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.96 E-value=24 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=18.6
Q ss_pred cccccccccccCCCCccccCCCCCcc-cchhhhHH
Q 024594 204 SRICQHCGISEKLTPAMRRGPAGPRT-LCNACGLM 237 (265)
Q Consensus 204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~-LCNaCGl~ 237 (265)
.++|.+||... +. +.... .|-.||-.
T Consensus 73 ~~~C~~CG~~~--e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVF--KP------NALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEE--CS------CCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEE--eC------CCCCCCcCccccCC
Confidence 68999999863 22 23345 89999975
No 55
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.93 E-value=11 Score=25.54 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=21.1
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHH
Q 024594 202 SVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (265)
Q Consensus 202 ~~~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~ 238 (265)
+..+.|..||.. . .+. +.+.+..|..||.-+
T Consensus 17 ~~~k~CP~CG~~---~-fm~--~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPG---V-FMA--DHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSS---C-EEE--ECSSEEECSSSCCEE
T ss_pred EecccCCCCCCc---e-EEe--cCCCeEECCCCCCEE
Confidence 345789999974 2 333 334578999999754
No 56
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.69 E-value=18 Score=30.22 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=19.9
Q ss_pred ccccccccccCCCCcccc-CCCCCcccchhhhHHH
Q 024594 205 RICQHCGISEKLTPAMRR-GPAGPRTLCNACGLMW 238 (265)
Q Consensus 205 ~~C~~C~~t~~~Tp~wR~-Gp~g~~~LCNaCGl~~ 238 (265)
-.|..|+-.. |-+-+. .-.---.-|+|||-..
T Consensus 104 VlC~~C~sPd--T~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPE--TDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSC--CEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCc--cEEEEecCCCEEEEEccCCCCCC
Confidence 3699999874 767652 1111236699998643
No 57
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.34 E-value=19 Score=27.81 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=8.6
Q ss_pred cccchhhhHHHH
Q 024594 228 RTLCNACGLMWA 239 (265)
Q Consensus 228 ~~LCNaCGl~~~ 239 (265)
-.+||+||....
T Consensus 75 YRvCn~CGkPI~ 86 (96)
T 3mhs_E 75 YRVCEKCGKPLA 86 (96)
T ss_dssp CEEETTTCCEEC
T ss_pred chhhhccCCcee
Confidence 468999986543
Done!