BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024595
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 43/281 (15%)
Query: 6 EKLEIDFVISTGDNFYEDGLTGEEDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVE 64
+ L DF++S GDNFY G+ +D F ++F +++ PSL+ W+ + GNHD+ G+V
Sbjct: 40 KTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVS 99
Query: 65 AQLSPVLTRKDSRWLCSRSF------ILDAEIAEFVFV--------DTTPFVDEYFEDPG 110
AQ++ ++ RW + I + ++ +F+ ++ FV + E P
Sbjct: 100 AQIA--YSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERP- 156
Query: 111 DSTYDWRGVYRRKEYLSDLLKDVDGALKNSKAKWKIVVGHHTIKSAGHHGVTKXXXXXXX 170
R + + L+ + K + A K + +V GH+ + S HG T
Sbjct: 157 ------RNLALARTQLAWIKKQLAAA----KEDYVLVAGHYPVWSIAEHGPTHCLVKQLL 206
Query: 171 XXXXXNNVDMYVNGHDHCLQHIS-SNGIEFLTSGGGS------KAWRGDRNWWSPEELKL 223
+ V Y+ GHDH LQ++ NG+ F+ SG G+ K R N + L+
Sbjct: 207 PLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGY----LRF 262
Query: 224 YYDGQ----GFMSVKMTRSEAVVLFYDVHGNILHKWSIPKE 260
++ + GF V++T E V + + G L K +P+
Sbjct: 263 HFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPRR 303
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 35/273 (12%)
Query: 11 DFVISTGDNFYEDGLTGEEDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQLSP 69
DF++S GDNFY G+ D F ++F +++ +L+ WY + GNHD+ G+V AQ++
Sbjct: 66 DFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIA- 124
Query: 70 VLTRKDSRWLCSRSF------ILDAEIAEFVFV--------DTTPFVDEYFEDPGDSTYD 115
++ RW + + + I +F+ ++ FV + E P D
Sbjct: 125 -YSKISKRWNFPSPYYRLRFKVPRSNITVAIFMLDTVMLCGNSDDFVSQQPEMPRD---- 179
Query: 116 WRGVYRRKEYLSDLLKDVDGALKNSKAKWKIVVGHHTIKSAGHHGVTKXXXXXXXXXXXX 175
GV R + LS L K + A K + +V GH+ I S HG T+
Sbjct: 180 -LGVARTQ--LSWLKKQLAAA----KEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLAA 232
Query: 176 NNVDMYVNGHDHCLQHIS-SNGIEFLTSGGGSKAWRGDRNWWSPEE--LKLYYDGQ---- 228
V Y+ GHDH LQ++ NG+ ++ SG G+ R+ L+ +Y +
Sbjct: 233 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSVRHQRKVPNGYLRFHYGSEDSLG 292
Query: 229 GFMSVKMTRSEAVVLFYDVHGNILHKWSIPKEP 261
GF V++ E + + + G L K S+P+ P
Sbjct: 293 GFTYVEIGSKEMSITYVEASGKSLFKTSLPRRP 325
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 43/277 (15%)
Query: 11 DFVISTGDNFYEDGLTGEEDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQLSP 69
DF++S GDNFY G+ D F ++F +++ +L+ WY + GNHD+ G+V AQ++
Sbjct: 45 DFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQIA- 103
Query: 70 VLTRKDSRWLCSRSF------ILDAEIAEFVFV--------DTTPFVDEYFEDPGDSTYD 115
++ RW + + + I +F+ ++ FV + E P D
Sbjct: 104 -YSKISKRWNFPSPYYRLRFKVPRSNITVAIFMLDTVMLCGNSDDFVSQQPEMPRD---- 158
Query: 116 WRGVYRRKEYLSDLLKDVDGALKNSKAKWKIVVGHHTIKSAGHHGVTKXXXXXXXXXXXX 175
GV R + LS L K + A K + +V GH+ I S HG T+
Sbjct: 159 -LGVARTQ--LSWLKKQLAAA----KEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLAA 211
Query: 176 NNVDMYVNGHDHCLQHIS-SNGIEFLTSGGGS------KAWRGDRNWWSPEELKLYYDGQ 228
V Y+ GHDH LQ++ NG+ ++ SG G+ + R N + L+ +Y +
Sbjct: 212 YGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSVRHQRKVPNGY----LRFHYGSE 267
Query: 229 ----GFMSVKMTRSEAVVLFYDVHGNILHKWSIPKEP 261
GF V++ E + + + G L K S+P+ P
Sbjct: 268 DSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLPRRP 304
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 35/275 (12%)
Query: 8 LEIDFVISTGDNFYEDGLTGEEDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
L DF++S GDNFY G+ D F ++F +++ SL+K WY + GNHD+ G+V AQ
Sbjct: 40 LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 99
Query: 67 LSPVLTRKDSRWLCSRSF------ILDAEIAEFVFV--------DTTPFVDEYFEDPGDS 112
++ ++ RW F I ++ +F+ ++ F+ + E P
Sbjct: 100 IA--YSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERP--- 154
Query: 113 TYDWRGVYRRKEYLSDLLKDVDGALKNSKAKWKIVVGHHTIKSAGHHGVTKXXXXXXXXX 172
R V + LS L K + A + + +V GH+ + S HG T
Sbjct: 155 ----RDVKLARTQLSWLKKQLAAA----REDYVLVAGHYPVWSIAEHGPTHCLVKQLRPL 206
Query: 173 XXXNNVDMYVNGHDHCLQHIS-SNGIEFLTSGGGSKAWRGDRNWWSPEE--LKLYYDGQ- 228
V Y+ GHDH LQ++ NG+ ++ SG G+ R+ L+ +Y +
Sbjct: 207 LATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTED 266
Query: 229 ---GFMSVKMTRSEAVVLFYDVHGNILHKWSIPKE 260
GF V+++ E V + + G L K +P+
Sbjct: 267 SLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRR 301
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 35/275 (12%)
Query: 8 LEIDFVISTGDNFYEDGLTGEEDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
L DF++S GDNFY G+ D F ++F +++ SL+K WY + GNHD+ G+V AQ
Sbjct: 46 LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 105
Query: 67 LSPVLTRKDSRWLCSRSF------ILDAEIAEFVFV--------DTTPFVDEYFEDPGDS 112
++ ++ RW F I ++ +F+ ++ F+ + E P
Sbjct: 106 IA--YSKISKRWNFPSPFYRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERP--- 160
Query: 113 TYDWRGVYRRKEYLSDLLKDVDGALKNSKAKWKIVVGHHTIKSAGHHGVTKXXXXXXXXX 172
R V + LS L K + A + + +V GH+ + S HG T
Sbjct: 161 ----RDVKLARTQLSWLKKQLAAA----REDYVLVAGHYPVWSIAEHGPTHCLVKQLRPL 212
Query: 173 XXXNNVDMYVNGHDHCLQHIS-SNGIEFLTSGGGSKAWRGDRNWWSPEE--LKLYYDGQ- 228
V Y+ GHDH LQ++ NG+ ++ SG G+ R+ L+ +Y +
Sbjct: 213 LATYGVTAYLCGHDHNLQYLQDENGVGYVLSGAGNFMDPSKRHQRKVPNGYLRFHYGTED 272
Query: 229 ---GFMSVKMTRSEAVVLFYDVHGNILHKWSIPKE 260
GF V+++ E V + + G L K +P+
Sbjct: 273 SLGGFAYVEISSKEMTVTYIEASGKSLFKTRLPRR 307
>pdb|3TGH|A Chain A, Gap50 The Anchor In The Inner Membrane Complex Of
Plasmodium
Length = 342
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 51/235 (21%)
Query: 9 EIDFVISTGDNFYEDGLTGEEDPAFLDSFTSIYTAPS--LQKQWYNVLGNHDYRGDVEAQ 66
+ F++S G NF DG+ G DPA+ + + +Y+ + ++ VLG D+ G+ AQ
Sbjct: 34 RVTFIVSPGSNFI-DGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQ 92
Query: 67 L-----------SPVLTRKDS------RWLCSR-------SFILDAE-----------IA 91
L KD+ +W+ F + + A
Sbjct: 93 LLKGQGIYIEKNGETSIEKDADATNYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAA 152
Query: 92 EFVFVDTTPFVDEYFEDPGDSTYDWRGVYRRKEYLSDLLKDVDGALKNSKAKWKIVVGHH 151
F+F+DT S + ++ ++ + +DL + A K A + IVVG
Sbjct: 153 AFIFIDTWVL---------SSNFPYKKIHEKA--WNDLKSQLSVAKK--IADFIIVVGDQ 199
Query: 152 TIKSAGHHGVTKXXXXXXXXXXXXNNVDMYVNGHDHCLQHISSNGIEFLTSGGGS 206
I S+G+ + VD+Y++GHD+ ++ I N + +T G GS
Sbjct: 200 PIYSSGYSRGSSYLAYYLLPLLKDAEVDLYISGHDNNMEVIEDNDMAHITCGSGS 254
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 179 DMYVNGHDHCLQHISSNGIEFLTSGGGSKAWRGDRNWWSPE 219
++ + GH C++++ S I L GGG R W+ E
Sbjct: 270 NLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYE 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,227,946
Number of Sequences: 62578
Number of extensions: 399189
Number of successful extensions: 758
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 12
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)