Query 024596
Match_columns 265
No_of_seqs 161 out of 426
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3000 Microtubule-binding pr 100.0 7.2E-73 1.6E-77 523.5 18.1 238 1-241 1-262 (295)
2 COG5217 BIM1 Microtubule-bindi 100.0 8.5E-51 1.8E-55 372.2 5.1 230 8-241 1-273 (342)
3 PF03271 EB1: EB1-like C-termi 99.8 8.6E-20 1.9E-24 126.0 3.1 40 198-237 1-43 (43)
4 PF00307 CH: Calponin homology 99.4 7.6E-13 1.6E-17 102.4 8.6 100 16-115 1-108 (108)
5 cd00014 CH Calponin homology d 99.3 3.3E-12 7.1E-17 98.9 8.2 98 15-114 2-106 (107)
6 smart00033 CH Calponin homolog 99.0 5.2E-10 1.1E-14 85.6 6.9 92 15-108 1-98 (103)
7 COG5217 BIM1 Microtubule-bindi 97.9 1.5E-05 3.3E-10 74.7 5.0 86 14-102 127-212 (342)
8 PF11971 CAMSAP_CH: CAMSAP CH 97.6 4.9E-05 1.1E-09 59.5 3.2 75 22-96 1-82 (85)
9 PF06294 DUF1042: Domain of Un 97.3 0.00058 1.3E-08 58.9 6.8 96 19-115 1-100 (158)
10 KOG2046 Calponin [Cytoskeleton 94.6 0.11 2.4E-06 46.7 6.8 81 16-99 27-113 (193)
11 PF05622 HOOK: HOOK protein; 89.3 0.43 9.2E-06 49.7 4.2 65 18-82 11-80 (713)
12 KOG0046 Ca2+-binding actin-bun 88.0 0.66 1.4E-05 47.6 4.4 86 13-99 508-600 (627)
13 KOG0046 Ca2+-binding actin-bun 85.3 0.66 1.4E-05 47.6 2.8 102 4-105 109-225 (627)
14 PF11414 Suppressor_APC: Adeno 82.8 3.6 7.9E-05 32.4 5.5 35 181-215 8-42 (84)
15 KOG1899 LAR transmembrane tyro 80.9 2.3 5E-05 44.6 4.7 37 183-219 177-213 (861)
16 KOG2996 Rho guanine nucleotide 80.2 1.2 2.5E-05 46.5 2.4 54 35-88 35-90 (865)
17 PF01763 Herpes_UL6: Herpesvir 76.5 4.2 9.1E-05 42.0 5.0 36 183-218 366-401 (557)
18 COG5199 SCP1 Calponin [Cytoske 72.7 6.2 0.00013 34.8 4.4 92 16-113 15-112 (178)
19 KOG3631 Alpha-parvin and relat 65.2 27 0.00057 33.7 7.3 96 14-109 257-357 (365)
20 COG5069 SAC6 Ca2+-binding acti 62.8 14 0.00031 37.9 5.3 74 34-109 151-227 (612)
21 KOG4196 bZIP transcription fac 54.4 29 0.00062 29.8 5.0 31 183-213 84-114 (135)
22 PF14056 DUF4250: Domain of un 47.8 9.6 0.00021 27.9 1.0 22 18-39 7-28 (55)
23 COG5069 SAC6 Ca2+-binding acti 47.4 28 0.00062 35.9 4.6 101 9-114 497-610 (612)
24 PF15444 TMEM247: Transmembran 46.3 1.4E+02 0.0031 27.1 8.4 114 86-218 21-137 (218)
25 KOG0035 Ca2+-binding actin-bun 45.2 17 0.00038 39.5 2.9 79 35-118 168-248 (890)
26 PF11577 NEMO: NF-kappa-B esse 44.3 61 0.0013 24.6 4.9 17 197-213 41-57 (68)
27 PRK10803 tol-pal system protei 43.3 36 0.00078 31.5 4.4 30 179-208 60-97 (263)
28 PF04977 DivIC: Septum formati 42.6 50 0.0011 24.0 4.2 26 179-204 23-48 (80)
29 PF09006 Surfac_D-trimer: Lung 42.5 82 0.0018 22.4 5.0 33 182-218 1-33 (46)
30 KOG0532 Leucine-rich repeat (L 42.5 39 0.00084 35.8 4.7 54 35-88 599-655 (722)
31 PF01166 TSC22: TSC-22/dip/bun 41.9 40 0.00087 25.1 3.5 28 179-206 13-40 (59)
32 PRK09413 IS2 repressor TnpA; R 41.3 51 0.0011 26.7 4.5 22 183-204 74-95 (121)
33 KOG4571 Activating transcripti 38.3 52 0.0011 31.6 4.6 29 181-210 256-284 (294)
34 PF07716 bZIP_2: Basic region 36.6 71 0.0015 22.4 4.1 22 181-202 33-54 (54)
35 COG5236 Uncharacterized conser 35.6 4.4E+02 0.0095 26.5 10.5 55 66-120 256-311 (493)
36 PF15007 CEP44: Centrosomal sp 34.1 38 0.00082 28.8 2.7 41 70-110 2-42 (131)
37 PF09701 Cas_Cmr5: CRISPR-asso 32.4 33 0.00072 27.9 2.1 15 102-116 106-120 (122)
38 PF10146 zf-C4H2: Zinc finger- 31.5 1.1E+02 0.0023 28.3 5.4 27 188-214 33-59 (230)
39 PF12308 Noelin-1: Neurogenesi 31.3 1.6E+02 0.0034 24.2 5.7 39 178-218 38-78 (101)
40 PF07586 HXXSHH: Protein of un 30.5 70 0.0015 29.8 4.1 36 183-218 165-201 (302)
41 KOG3000 Microtubule-binding pr 29.2 21 0.00046 34.2 0.4 95 13-119 101-216 (295)
42 smart00338 BRLZ basic region l 29.1 1.6E+02 0.0034 21.1 5.0 27 180-206 33-59 (65)
43 PF11336 DUF3138: Protein of u 28.2 87 0.0019 32.0 4.5 26 177-202 22-47 (514)
44 PF04728 LPP: Lipoprotein leuc 27.6 1E+02 0.0023 22.7 3.7 23 180-202 3-25 (56)
45 COG2900 SlyX Uncharacterized p 24.9 2.5E+02 0.0054 21.8 5.5 42 180-221 22-63 (72)
46 KOG4797 Transcriptional regula 24.8 1.2E+02 0.0025 25.5 3.9 23 181-203 68-90 (123)
47 COG4238 Murein lipoprotein [Ce 24.5 1.4E+02 0.003 23.5 4.0 29 176-204 21-49 (78)
48 PRK07857 hypothetical protein; 24.2 2.6E+02 0.0056 23.0 5.9 37 177-213 25-61 (106)
49 PF07407 Seadorna_VP6: Seadorn 24.1 96 0.0021 30.7 3.8 27 178-204 37-63 (420)
50 PF09789 DUF2353: Uncharacteri 23.3 1.5E+02 0.0032 28.8 5.0 24 188-211 148-171 (319)
51 PF11853 DUF3373: Protein of u 22.8 85 0.0018 32.2 3.4 23 181-204 26-48 (489)
52 PF11569 Homez: Homeodomain le 22.7 75 0.0016 23.4 2.2 40 73-112 9-48 (56)
53 PF05008 V-SNARE: Vesicle tran 22.5 3E+02 0.0066 20.1 5.6 33 181-213 26-66 (79)
54 PF03670 UPF0184: Uncharacteri 21.0 2.8E+02 0.006 22.0 5.2 36 178-213 24-59 (83)
55 TIGR01881 cas_Cmr5 CRISPR-asso 20.9 70 0.0015 26.7 2.0 51 67-117 65-124 (127)
56 PF14152 YfhE: YfhE-like prote 20.8 34 0.00073 23.3 0.1 16 227-242 11-26 (37)
57 PRK10219 DNA-binding transcrip 20.4 4E+02 0.0086 20.4 6.1 84 17-115 8-97 (107)
58 PF11853 DUF3373: Protein of u 20.2 74 0.0016 32.6 2.4 23 179-201 30-52 (489)
59 KOG0464 Elongation factor G [T 20.1 54 0.0012 33.7 1.3 11 102-112 323-333 (753)
No 1
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=7.2e-73 Score=523.55 Aligned_cols=238 Identities=42% Similarity=0.642 Sum_probs=194.1
Q ss_pred CCccccccc-CCCccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHH
Q 024596 1 MATNIGMMD-SAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQD 79 (265)
Q Consensus 1 ~~~~~g~m~-~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~ 79 (265)
||.++++|+ +..++||+|+|+|||++|+++++||||||+|||||||||+||||+|||+||||+|+.||||++|||+||+
T Consensus 1 ~a~nv~~~~~s~~~~sR~E~laW~N~~l~~n~~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~ 80 (295)
T KOG3000|consen 1 MAVNVYATVVSTENESRLEILAWINDLLQLNLTKIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQT 80 (295)
T ss_pred CceeeeeecccccccchHHHHHHHHhhhhcchhhhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHH
Confidence 889999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCC--CCCCCC---CCCCc--ccc
Q 024596 80 VFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKE--RSSRGS---QKISK--SLQ 152 (265)
Q Consensus 80 ~f~k~~I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~g~~--~~~~~~---~~~~~--s~~ 152 (265)
+|+++||+|+|||++|+||+|||||||+||||+|||+||+| .+|||.+||...|.+ ....++ +.|.+ +.+
T Consensus 81 ~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g---~~yd~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~ 157 (295)
T KOG3000|consen 81 CFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGG---KGYDALARREGIGIGRSAISEGSKGVSAPKILSPVS 157 (295)
T ss_pred HHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCc---cccCHHHHhhcccccccCcccccccccccccccccc
Confidence 99999999999999999999999999999999999999997 699999999643322 111111 11111 111
Q ss_pred cCCCCC---CCCCCCCCCCCccc--c--------cCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcC
Q 024596 153 TNNMHN---AGSGDIGHRPRQAK--I--------YGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQT 219 (265)
Q Consensus 153 ~~~~~~---~~s~~~~~~~~p~~--~--------~~~~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~ 219 (265)
++.+.+ +.+....+.+.|.. + ......+++.+|.+|+.++++++++||+||||||+|||+||||||+
T Consensus 158 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~~l~~~~~~~~~le~ERdfyf~kLr~iEil~q~ 237 (295)
T KOG3000|consen 158 SAAPQNFVPARTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQQLTELKTTIASLEKERDFYFSKLRDIEILCQT 237 (295)
T ss_pred ccCcccCCCccCcccccCCCCCcccccccccccccchhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccchhhhccC
Confidence 111110 00000011111110 0 1123478999999999999999999999999999999999999998
Q ss_pred -CCCCChh--HHHHHhhhhhccccc
Q 024596 220 -PELENLP--VRISGLLILIILHFS 241 (265)
Q Consensus 220 -~e~e~~~--~~~~I~~ILYaT~~~ 241 (265)
++.+..| .+++|+.|||+|++.
T Consensus 238 ~~~~e~~~~~~v~rI~~ilyat~~g 262 (295)
T KOG3000|consen 238 SPDPESIPNVMVKRILSILYATEEG 262 (295)
T ss_pred CCccccccHHHHHHHHHHHhhhhcc
Confidence 5667777 899999999999863
No 2
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=8.5e-51 Score=372.17 Aligned_cols=230 Identities=30% Similarity=0.316 Sum_probs=171.7
Q ss_pred ccCCCccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcc
Q 024596 8 MDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIE 87 (265)
Q Consensus 8 m~~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~ 87 (265)
||.+.--||.|||.|+|-++.++|++||+|+.|+|||||+|+|| +.+|+++|+|++..||+|..|+||||.+|.+.||+
T Consensus 1 ~~~~l~esr~ell~w~N~v~~L~l~rIEdcg~g~am~qI~dsiY-~Dlp~~~V~f~~~aey~~~~n~kILq~~Fs~~Gid 79 (342)
T COG5217 1 CDKALVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHDSIY-VDLPDSLVRFPWIAEYKHPGNGKILQLLFSDYGID 79 (342)
T ss_pred CcchhhhhHHHHHHHHHHHhhcCceehhhhccchhHHHHHHHHh-ccCcHhhccccchhheecCCchhHHHHHHHhcCcc
Confidence 56677779999999999999999999999999999999999999 77999999999999999999999999999999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCCCC------CCCCCCCcccccCCCC--CC
Q 024596 88 KHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSS------RGSQKISKSLQTNNMH--NA 159 (265)
Q Consensus 88 k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~g~~~~~------~~~~~~~~s~~~~~~~--~~ 159 (265)
|.+.|++|+.||+|||||||||+|++|++|+++ ..|||.+||...++.... ++..-|.++....++. ..
T Consensus 80 k~v~v~~lvrck~qdnLeflQwlk~hWvr~~~~---~~yd~~arr~~r~p~~tr~~~~~~rs~~~p~sa~r~~s~G~~s~ 156 (342)
T COG5217 80 KAVLVLVLVRCKLQDNLEFLQWLKDHWVRNLGH---ISYDRNARRLGRTPKSTRELIEWIRSLGIPISAIRELSKGVASC 156 (342)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CccChhHHhcCCCcchHHHHHhhhhhcCCchhhhhhhccCcccc
Confidence 999999999999999999999999999999997 489999999654322111 0000010000000000 00
Q ss_pred CCCCCCCCCCcccc--cCCCC----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCCC------
Q 024596 160 GSGDIGHRPRQAKI--YGANS----------AQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPE------ 221 (265)
Q Consensus 160 ~s~~~~~~~~p~~~--~~~~~----------~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e------ 221 (265)
.+-++...+-|... ..+.. +++|-.|+.++.+.+.++-.||.||+|||+|||+||||+|...
T Consensus 157 ~sl~t~hss~~~N~v~~ta~t~~~Lra~qa~Qe~igSln~~ly~~~~t~~~le~er~fYfnKlr~ieilv~t~k~~~~~~ 236 (342)
T COG5217 157 KSLSTIHSSFPQNFVKNTAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEILVETLKREGPRA 236 (342)
T ss_pred hhhhhhhcccccccccCcchhHHHHHHHHHHHHHhhccceeeeeeccccceeeeHHHHHhhhcchhHHHHHHHhhhCccc
Confidence 11000001111111 11222 2333445556667788899999999999999999999999721
Q ss_pred ------------CCC-----hhHHHHHhhhhhccccc
Q 024596 222 ------------LEN-----LPVRISGLLILIILHFS 241 (265)
Q Consensus 222 ------------~e~-----~~~~~~I~~ILYaT~~~ 241 (265)
..+ +...++|++|||+|++-
T Consensus 237 ~~~~~~~~~~~h~~~t~~~m~~~~~rI~~ily~ta~g 273 (342)
T COG5217 237 SILPGTSLQCPHCKNTREIMDAKDNRIKEILYMTASG 273 (342)
T ss_pred cccCCccccCCccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 111 24689999999999863
No 3
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=99.78 E-value=8.6e-20 Score=126.04 Aligned_cols=40 Identities=60% Similarity=0.742 Sum_probs=34.4
Q ss_pred HHHHhHHHHHHHhHHHHHHhcC-CCCCCh--hHHHHHhhhhhc
Q 024596 198 LLEKERDFYFAKLRDIEILCQT-PELENL--PVRISGLLILII 237 (265)
Q Consensus 198 ~LEkERDFYF~KLRdIEiLcQ~-~e~e~~--~~~~~I~~ILYa 237 (265)
+||+||||||+|||+||+|||+ .+.++. +++++|++||||
T Consensus 1 ~le~ERdFYf~KLR~IE~l~q~~~~~~~~~~~~~~~I~~ILYa 43 (43)
T PF03271_consen 1 SLEKERDFYFNKLRDIEILCQEANESENEPKDLIKKIQEILYA 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHCCTC--HHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHhcC
Confidence 6899999999999999999999 444444 489999999997
No 4
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.42 E-value=7.6e-13 Score=102.39 Aligned_cols=100 Identities=31% Similarity=0.594 Sum_probs=86.8
Q ss_pred HHHHHHHhHhhhc-----CCcchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCccc
Q 024596 16 RNELLTWINNRLQ-----LHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEK 88 (265)
Q Consensus 16 R~eLL~WiN~~L~-----~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I~k 88 (265)
+++|+.|||..|. ..++.+ +++++|.++|+|++.+.|+.|++++++=+.++..+.++|..++-++.++ +|++.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 4689999999995 457777 9999999999999999999999999821112788999999999999999 99999
Q ss_pred cccccccc-cCCCcchHHHHHHHHHHHh
Q 024596 89 HIEVNKLV-KGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 89 ~ipV~kLv-kgk~qdNlEFlQWfk~f~d 115 (265)
.+.++.|+ +|+.+..+.|+.+++.+|.
T Consensus 81 ~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 81 LLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp TS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 99999999 9999999999999998873
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.35 E-value=3.3e-12 Score=98.91 Aligned_cols=98 Identities=24% Similarity=0.381 Sum_probs=89.8
Q ss_pred CHHHHHHHhHhhhcCCcc-hh----hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc
Q 024596 15 GRNELLTWINNRLQLHLS-RI----EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH 89 (265)
Q Consensus 15 sR~eLL~WiN~~L~~~~~-kI----Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ 89 (265)
.+.+++.|||..+..... .+ +++++|.++|+|++.++|+.++..+++ ++...+.++|.....++.+++||+..
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~--~~~~~~~~~Ni~~~l~~~~~~gi~~~ 79 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN--PLSRFKRLENINLALNFAEKLGVPVV 79 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccccc--ccchhhHHHHHHHHHHHHHHcCCcee
Confidence 468999999999988775 55 899999999999999999999887765 88899999999999999999999998
Q ss_pred -ccccccc-cCCCcchHHHHHHHHHHH
Q 024596 90 -IEVNKLV-KGRPLDNLEFLQWLKRYC 114 (265)
Q Consensus 90 -ipV~kLv-kgk~qdNlEFlQWfk~f~ 114 (265)
+..+.|+ +|.....+.++.++..+|
T Consensus 80 ~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 80 NFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred ccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 9999999 999999999999998876
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.05 E-value=5.2e-10 Score=85.60 Aligned_cols=92 Identities=25% Similarity=0.339 Sum_probs=77.5
Q ss_pred CHHHHHHHhHhhhcCCc-ch----hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCc-cc
Q 024596 15 GRNELLTWINNRLQLHL-SR----IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKI-EK 88 (265)
Q Consensus 15 sR~eLL~WiN~~L~~~~-~k----IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I-~k 88 (265)
.+.+++.|+|..|.... .. .+++++|.++|+|++.++|+.++.+++. .++...+.++|.....++.++.|+ ..
T Consensus 1 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~-~~~~~~~~~~Ni~~~l~~~~~~g~~~~ 79 (103)
T smart00033 1 QEKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVN-ASLSRFKKIENINLALSFAEKLGGKLV 79 (103)
T ss_pred ChHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhcc-ccccHHHHHHhHHHHHHHHHHcCCeee
Confidence 36789999999998753 22 5789999999999999999999987766 677789999999999999999996 56
Q ss_pred cccccccccCCCcchHHHHH
Q 024596 89 HIEVNKLVKGRPLDNLEFLQ 108 (265)
Q Consensus 89 ~ipV~kLvkgk~qdNlEFlQ 108 (265)
.+..+.|+.|+ .+.+-++.
T Consensus 80 ~~~~~Dl~~~~-k~~~~v~~ 98 (103)
T smart00033 80 LFEPEDLVEGN-KLILGVIW 98 (103)
T ss_pred ccCHHHHhhcc-hHHHHHHH
Confidence 78899999997 56665543
No 7
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.89 E-value=1.5e-05 Score=74.70 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=77.0
Q ss_pred cCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccccccc
Q 024596 14 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVN 93 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ipV~ 93 (265)
.+++|++.|+- ++..-.+.++++++|++.|-.+-.+| .+.|-.-|+ ++..+++|+.|.+..|+.|..++++.+.|++
T Consensus 127 ~~tr~~~~~~r-s~~~p~sa~r~~s~G~~s~~sl~t~h-ss~~~N~v~-~ta~t~~~Lra~qa~Qe~igSln~~ly~~~~ 203 (342)
T COG5217 127 KSTRELIEWIR-SLGIPISAIRELSKGVASCKSLSTIH-SSFPQNFVK-NTAGTHDYLRAMQACQEFIGSLNIKLYFPVD 203 (342)
T ss_pred chHHHHHhhhh-hcCCchhhhhhhccCcccchhhhhhh-ccccccccc-CcchhHHHHHHHHHHHHHhhccceeeeeecc
Confidence 48899999998 58899999999999999999988887 556766666 5566899999999999999999999999999
Q ss_pred ccccCCCcc
Q 024596 94 KLVKGRPLD 102 (265)
Q Consensus 94 kLvkgk~qd 102 (265)
.|+++++++
T Consensus 204 t~~~le~er 212 (342)
T COG5217 204 TLVKLEMER 212 (342)
T ss_pred ccceeeeHH
Confidence 999999998
No 8
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.61 E-value=4.9e-05 Score=59.48 Aligned_cols=75 Identities=20% Similarity=0.510 Sum_probs=55.9
Q ss_pred HhHhhhcCCcchhh----hcCCchhHhhhhhhhcCCCcccccccccCC-ChHHHHHHHHHHHHHHHh-cCccc-cccccc
Q 024596 22 WINNRLQLHLSRIE----EAASGAVQCQMLDMTYPGVVPMHKVNFDAK-TEYDMIQNYKVLQDVFNK-LKIEK-HIEVNK 94 (265)
Q Consensus 22 WiN~~L~~~~~kIE----el~sGaayCQlmd~l~Pg~v~l~kVkf~a~-~e~e~~~NfKiLQ~~f~k-~~I~k-~ipV~k 94 (265)
|+|...--....|+ ++++|++-|+|++-.+|+.||++.|.+..+ +..+.+.|..+|++.-.+ +|... ++.++.
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ed 80 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPED 80 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHH
Confidence 44444444444444 569999999999999999999999999755 578899999999998766 56544 445554
Q ss_pred cc
Q 024596 95 LV 96 (265)
Q Consensus 95 Lv 96 (265)
|.
T Consensus 81 l~ 82 (85)
T PF11971_consen 81 LL 82 (85)
T ss_pred Hh
Confidence 43
No 9
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=97.35 E-value=0.00058 Score=58.90 Aligned_cols=96 Identities=21% Similarity=0.404 Sum_probs=66.8
Q ss_pred HHHHhHh-hhcCCcchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHH-HHHHHhcCccccc-cccc
Q 024596 19 LLTWINN-RLQLHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVL-QDVFNKLKIEKHI-EVNK 94 (265)
Q Consensus 19 LL~WiN~-~L~~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiL-Q~~f~k~~I~k~i-pV~k 94 (265)
|+.||++ -|......+ .++++|...+.|+...||..|.|+.-. ++..-.--+.||..| +.+|+|+|+.-.- .++.
T Consensus 1 l~~WL~~l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~-~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i~~ 79 (158)
T PF06294_consen 1 LLKWLQSLDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYS-NGNSVAQKLNNWETLNEKVLKKLGIKLDKEDIEG 79 (158)
T ss_dssp HHHHHHHS--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT----HHHHHH
T ss_pred ChHHHhcCCCCCCCCchHHHcccccHHHHHHHHHCCCCccccccC-CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6899998 334444455 499999999999999999999997633 355666799999999 9999999986543 4789
Q ss_pred cccCCCcchHHHHHHHHHHHh
Q 024596 95 LVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 95 Lvkgk~qdNlEFlQWfk~f~d 115 (265)
++.|+...=-.+|.=++.+..
T Consensus 80 i~~~~~Gaae~lL~~L~~~l~ 100 (158)
T PF06294_consen 80 IINCKPGAAESLLYQLYTKLT 100 (158)
T ss_dssp HHTT-TTTTHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999888888888877763
No 10
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=94.63 E-value=0.11 Score=46.68 Aligned_cols=81 Identities=22% Similarity=0.426 Sum_probs=62.0
Q ss_pred HHHHHHHhHhhhcCCc----chhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc--
Q 024596 16 RNELLTWINNRLQLHL----SRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH-- 89 (265)
Q Consensus 16 R~eLL~WiN~~L~~~~----~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~-- 89 (265)
..||+.||-+++.+.. .=.+.|-+|...|.|++.|+|++++ +.+.++...-.+.|..=+..+.++.|++..
T Consensus 27 ~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~---~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~~d~ 103 (193)
T KOG2046|consen 27 EKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVK---KINESKMAFVQMENISNFIKAAKKYGVPEVDL 103 (193)
T ss_pred HHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCccc---ccccccccHHHHHHHHHHHHHHHhcCCChhhc
Confidence 4789999998633322 1246799999999999999996544 444778887888888888899999999773
Q ss_pred ccccccccCC
Q 024596 90 IEVNKLVKGR 99 (265)
Q Consensus 90 ipV~kLvkgk 99 (265)
++-..|--+|
T Consensus 104 FqtvDLfE~k 113 (193)
T KOG2046|consen 104 FQTVDLFEGK 113 (193)
T ss_pred ccccccccCC
Confidence 6667777776
No 11
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.26 E-value=0.43 Score=49.74 Aligned_cols=65 Identities=20% Similarity=0.352 Sum_probs=41.6
Q ss_pred HHHHHhHhh-hcCCcchhhhcCCchhHhhhhhhhcCCCcc---cccccccCCChHH-HHHHHHHHHHHHH
Q 024596 18 ELLTWINNR-LQLHLSRIEEAASGAVQCQMLDMTYPGVVP---MHKVNFDAKTEYD-MIQNYKVLQDVFN 82 (265)
Q Consensus 18 eLL~WiN~~-L~~~~~kIEel~sGaayCQlmd~l~Pg~v~---l~kVkf~a~~e~e-~~~NfKiLQ~~f~ 82 (265)
-|+.|||.. +...+..+++|++|++.=++|..|-|.... +.+|+=++...+- .++|+|.|=..+.
T Consensus 11 ~Lv~Wv~tf~~~~~~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~ 80 (713)
T PF05622_consen 11 SLVTWVQTFNLSAPCSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIK 80 (713)
T ss_dssp HHHHHHTT---SS---SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 489999973 345688999999999999999999998655 4566544333222 5799887765443
No 12
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=87.95 E-value=0.66 Score=47.55 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=69.4
Q ss_pred ccCHHHHHHHhHhhhcC-----Ccchh--hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcC
Q 024596 13 FVGRNELLTWINNRLQL-----HLSRI--EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLK 85 (265)
Q Consensus 13 ~~sR~eLL~WiN~~L~~-----~~~kI--Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~ 85 (265)
-++-.++++|+|+.|.- .+... -.+++|...--++|+|-||+|+-+=|+ ..+++.|-..|-|..=++=+|+|
T Consensus 508 ~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~LV~-~G~t~EdK~~NAkYaIS~ARKiG 586 (627)
T KOG0046|consen 508 DITDSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYSLVT-SGNTDEEKLLNAKYAISVARKLG 586 (627)
T ss_pred CCcHHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchhhcc-CCCChhhhhhcchhhHhHHHhhC
Confidence 56789999999999943 33333 348899999999999999999877777 45589999999999999999999
Q ss_pred ccccccccccccCC
Q 024596 86 IEKHIEVNKLVKGR 99 (265)
Q Consensus 86 I~k~ipV~kLvkgk 99 (265)
-.-+.=.|.++.-+
T Consensus 587 a~IyaLPEDIvEV~ 600 (627)
T KOG0046|consen 587 ASIYALPEDIVEVN 600 (627)
T ss_pred ceEEeccHHHhhhc
Confidence 87765555555443
No 13
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=85.29 E-value=0.66 Score=47.56 Aligned_cols=102 Identities=15% Similarity=0.274 Sum_probs=79.3
Q ss_pred ccccccCCCccCHHHHHHHhHhhhcCC-------------cchhhhcCCchhHhhhhhhhcCCCcccccccccC-CChHH
Q 024596 4 NIGMMDSAYFVGRNELLTWINNRLQLH-------------LSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDA-KTEYD 69 (265)
Q Consensus 4 ~~g~m~~~~~~sR~eLL~WiN~~L~~~-------------~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a-~~e~e 69 (265)
+.|...+-.---|.+...|||..|.-+ ..=.+.|.+|...|.+++.--||.|+=+-+++.- =+.++
T Consensus 109 st~~~Hti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~ 188 (627)
T KOG0046|consen 109 STGTQHTINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFE 188 (627)
T ss_pred cccceeeecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhh
Confidence 444444444445889999999999653 3346899999999999999999999988887643 35789
Q ss_pred HHHHHHHHHHHHHhcCccc-cccccccccCCCcchHH
Q 024596 70 MIQNYKVLQDVFNKLKIEK-HIEVNKLVKGRPLDNLE 105 (265)
Q Consensus 70 ~~~NfKiLQ~~f~k~~I~k-~ipV~kLvkgk~qdNlE 105 (265)
...|..+.=..-+..|+.. .|.-+.|..||.--=|-
T Consensus 189 ~~EN~~l~lnSAkAiGc~VvNIga~Dl~eGrphLVLG 225 (627)
T KOG0046|consen 189 RNENLNLALNSAKAIGCTVVNIGAQDLAEGRPHLVLG 225 (627)
T ss_pred hccchhhHHhhcccccceEEecCchhhhcCCceeeHH
Confidence 9999999888888888765 68888999998654433
No 14
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=82.81 E-value=3.6 Score=32.36 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Q 024596 181 EVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEI 215 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEi 215 (265)
.+.+|.+|-.-|---+|-+|++||.|+..|+.+--
T Consensus 8 ~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~ 42 (84)
T PF11414_consen 8 RMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQE 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778778888889999999999999998754
No 15
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.92 E-value=2.3 Score=44.64 Aligned_cols=37 Identities=41% Similarity=0.395 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcC
Q 024596 183 QALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQT 219 (265)
Q Consensus 183 ~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~ 219 (265)
-+|++++.+||+....||||+.=|=.|||+-|-+.|+
T Consensus 177 lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 177 LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 3678899999999999999999999999999999986
No 16
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=80.20 E-value=1.2 Score=46.48 Aligned_cols=54 Identities=15% Similarity=0.407 Sum_probs=42.6
Q ss_pred hhcCCchhHhhhhhhhcCCCcccccccccCC-ChHHHHHHHHHHH-HHHHhcCccc
Q 024596 35 EEAASGAVQCQMLDMTYPGVVPMHKVNFDAK-TEYDMIQNYKVLQ-DVFNKLKIEK 88 (265)
Q Consensus 35 Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~-~e~e~~~NfKiLQ-~~f~k~~I~k 88 (265)
.-|.+|+-.|||++-|-|++|++++|++.+. +..=|.+|.+.+- .|-.+.|+.+
T Consensus 35 q~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~ 90 (865)
T KOG2996|consen 35 QALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRD 90 (865)
T ss_pred HHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCch
Confidence 4588999999999999999999999999876 4667888887643 3444555533
No 17
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=76.50 E-value=4.2 Score=41.98 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhc
Q 024596 183 QALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQ 218 (265)
Q Consensus 183 ~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ 218 (265)
.=|++|++++=.+|++|++||+.|=.|+|++|....
T Consensus 366 kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~ 401 (557)
T PF01763_consen 366 KCLEGQINNQFDTIEDLKEENQDLEKKLRELESELS 401 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999755
No 18
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=72.66 E-value=6.2 Score=34.77 Aligned_cols=92 Identities=17% Similarity=0.333 Sum_probs=61.2
Q ss_pred HHHHHHHhHhhhcCCcc----hhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc--
Q 024596 16 RNELLTWINNRLQLHLS----RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH-- 89 (265)
Q Consensus 16 R~eLL~WiN~~L~~~~~----kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~-- 89 (265)
-+|.--||-++|...+. =++.|-+|+..|.|+.-.-|+.|.-+ ..+.+.--..|.--+=+..+|++|+-+
T Consensus 15 ~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~yK----eSkmpFVQmenIs~Fin~~~k~~vpe~el 90 (178)
T COG5199 15 QKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIKYK----ESKMPFVQMENISSFINGLKKLRVPEYEL 90 (178)
T ss_pred HHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccceec----ccCCceeeHHHHHHHHHHHHHhCCCHHHH
Confidence 36888999999976554 48999999999999999998874322 244455556677777788889887543
Q ss_pred ccccccccCCCcchHHHHHHHHHH
Q 024596 90 IEVNKLVKGRPLDNLEFLQWLKRY 113 (265)
Q Consensus 90 ipV~kLvkgk~qdNlEFlQWfk~f 113 (265)
+....|...| |--..++=+|.+
T Consensus 91 FQT~DLFE~k--d~~qV~~~l~sl 112 (178)
T COG5199 91 FQTNDLFEAK--DLRQVVICLYSL 112 (178)
T ss_pred HHhhhHHhhc--CHHHHHHHHHHH
Confidence 3333444333 122245555554
No 19
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=65.17 E-value=27 Score=33.71 Aligned_cols=96 Identities=18% Similarity=0.306 Sum_probs=77.7
Q ss_pred cCHHHHHHHhHhhh---cCCcchhh-hcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc
Q 024596 14 VGRNELLTWINNRL---QLHLSRIE-EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH 89 (265)
Q Consensus 14 ~sR~eLL~WiN~~L---~~~~~kIE-el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ 89 (265)
+-+.-|+.++|.-| ++..+.++ |..+|+...-+|-.|=--.|||+-....+++-.|.++|....-+.++.-|..|+
T Consensus 257 ~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~D~GL~kp 336 (365)
T KOG3631|consen 257 VVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMKDGGLEKP 336 (365)
T ss_pred HHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHHccCcCCC
Confidence 34678999999766 55666665 788999888888888766799999999999999999999888888888899885
Q ss_pred -ccccccccCCCcchHHHHHH
Q 024596 90 -IEVNKLVKGRPLDNLEFLQW 109 (265)
Q Consensus 90 -ipV~kLvkgk~qdNlEFlQW 109 (265)
.-++.++.|.....|-.|.-
T Consensus 337 ~~rpeDIvN~D~KSTLRvLy~ 357 (365)
T KOG3631|consen 337 KVRPEDIVNKDLKSTLRVLYN 357 (365)
T ss_pred CCChHHhhcccHHHHHHHHHH
Confidence 55888899988776665543
No 20
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=62.75 E-value=14 Score=37.89 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=58.5
Q ss_pred hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccccccccccccCCCcc---hHHHHHH
Q 024596 34 IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLD---NLEFLQW 109 (265)
Q Consensus 34 IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ipV~kLvkgk~qd---NlEFlQW 109 (265)
..+|.+|-|+|-|++.-.|+.+.-...++..+.-. .+||+-...+=+-.||.+-|.|+..+.-..-| ++-.+-|
T Consensus 151 ~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~--~n~~qafe~a~k~Igi~rli~vedivnV~~pDERsimtyv~~ 227 (612)
T COG5069 151 FRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKA--LNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSW 227 (612)
T ss_pred HHHhhhhHHHHHHHhhcCCcccCccccchhhcccc--hhHHHHHHHHHHhhchHhhcCcceeeecCCcchHHHHHHHHH
Confidence 36899999999999999999988888888776633 67887777777888999999988877766666 4445555
No 21
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=54.41 E-value=29 Score=29.77 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 024596 183 QALSKEITDLKLSVDLLEKERDFYFAKLRDI 213 (265)
Q Consensus 183 ~~L~~q~~elk~~ve~LEkERDFYF~KLRdI 213 (265)
.+|.+|++.|+..+..+-.|||-|=+|+-..
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999998887543
No 22
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=47.82 E-value=9.6 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHHHHhHhhhcCCcchhhhcCC
Q 024596 18 ELLTWINNRLQLHLSRIEEAAS 39 (265)
Q Consensus 18 eLL~WiN~~L~~~~~kIEel~s 39 (265)
-||..||..|+-+|..+++||.
T Consensus 7 mLlS~VN~kLRD~~~sLd~Lc~ 28 (55)
T PF14056_consen 7 MLLSIVNMKLRDEYSSLDELCY 28 (55)
T ss_pred HHHHHHHHHHHhccCCHHHHHH
Confidence 4799999999999999999874
No 23
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=47.42 E-value=28 Score=35.86 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=70.7
Q ss_pred cCCCccCHHHHHHHhHhhhcCCcchhhhcC---------CchhHhhhhhhhcCCCcccccccccCCChHHHHHHHH-HHH
Q 024596 9 DSAYFVGRNELLTWINNRLQLHLSRIEEAA---------SGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYK-VLQ 78 (265)
Q Consensus 9 ~~~~~~sR~eLL~WiN~~L~~~~~kIEel~---------sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfK-iLQ 78 (265)
.+.+.+|-.||.+|+++ |.+.+.|=|... +|+-|--+++.++|+-++-.-|+ .+.++.+-+.|-| +.-
T Consensus 497 k~~~~lsdsd~~a~l~s-lgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel~D~d~v~-~~~~~f~diad~rsl~i 574 (612)
T COG5069 497 KDGCGLSDSDLCAWLGS-LGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVDYDLVT-RGFTEFDDIADARSLAI 574 (612)
T ss_pred cCCCCCCHHHHHHHHHH-hccccCCccceeeccCCccccccchHHHHHHHHhhhhcChhhhh-hhHHHHHHhhhhhhhhc
Confidence 45678899999999995 888887777654 39999999999999988766666 5566778888988 222
Q ss_pred H--HHHhcC-ccccccccccccCCCcchHHHHHHHHHHH
Q 024596 79 D--VFNKLK-IEKHIEVNKLVKGRPLDNLEFLQWLKRYC 114 (265)
Q Consensus 79 ~--~f~k~~-I~k~ipV~kLvkgk~qdNlEFlQWfk~f~ 114 (265)
+ .+.++| |-+-+|-+ +.+ -..-|+.+.|++.+.
T Consensus 575 s~~ilRs~~aii~~lpe~-in~--~r~~Ldvltfi~slm 610 (612)
T COG5069 575 SSKILRSLGAIIKFLPED-ING--VRPRLDVLTFIESLM 610 (612)
T ss_pred cHHHHHHhhhHheechhh-hcc--cCccchHHHHHHHHh
Confidence 2 566666 33333311 111 124578899988774
No 24
>PF15444 TMEM247: Transmembrane protein 247
Probab=46.34 E-value=1.4e+02 Score=27.12 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=54.7
Q ss_pred ccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCCCCCCCCCCCcccccCCCCCC-CCCCC
Q 024596 86 IEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNA-GSGDI 164 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~g~~~~~~~~~~~~~s~~~~~~~~~-~s~~~ 164 (265)
.+|.+|.+....||....||- +...+ ..+||-++.--. ......++++++.++.+.+++..+ +-++.
T Consensus 21 ~pk~vp~d~~segkpra~lea--------es~kp---dSSyd~LEe~et-ced~gcpGppksLs~K~gp~tkGqAGDgPe 88 (218)
T PF15444_consen 21 FPKMVPGDSMSEGKPRASLEA--------ESPKP---DSSYDYLEEMET-CEDGGCPGPPKSLSPKAGPTTKGQAGDGPE 88 (218)
T ss_pred CCCCCCCCCCCCCCccccccc--------CCCCC---cchhhHHHhccc-cccCCCCCCCCCCCccCCCCCCCCCCCCCC
Confidence 478899999999999887752 22222 246888875410 001111122222111111111111 11111
Q ss_pred CCCCCcccccCCCCHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhc
Q 024596 165 GHRPRQAKIYGANSAQEVQALS--KEITDLKLSVDLLEKERDFYFAKLRDIEILCQ 218 (265)
Q Consensus 165 ~~~~~p~~~~~~~~~~~i~~L~--~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ 218 (265)
...-.|+.+..-++..+++.++ =|++.||-..|.-|++|. -=|++||
T Consensus 89 ~~elp~~~~~e~~~emELEKvRMEFELTrLKyLHeENERQRQ-------HEevMeQ 137 (218)
T PF15444_consen 89 PAELPPTPGTEHNTEMELEKVRMEFELTRLKYLHEENERQRQ-------HEEVMEQ 137 (218)
T ss_pred hhhcCCCCCcCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHH
Confidence 1000111121223344555443 478888888888888886 3456665
No 25
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=45.17 E-value=17 Score=39.52 Aligned_cols=79 Identities=18% Similarity=0.368 Sum_probs=68.1
Q ss_pred hhcCCchhHhhhhhhhcCCCcc-cccccccCCChHHHHHHHHHHHHHHHh-cCccccccccccccCCCcchHHHHHHHHH
Q 024596 35 EEAASGAVQCQMLDMTYPGVVP-MHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEKHIEVNKLVKGRPLDNLEFLQWLKR 112 (265)
Q Consensus 35 Eel~sGaayCQlmd~l~Pg~v~-l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I~k~ipV~kLvkgk~qdNlEFlQWfk~ 112 (265)
+--.+|.++|++++.--|.-|+ ..+ -+..+-+.|.++--..+.+ ++|++.++.+..+--..-|-+-.++....
T Consensus 168 ~sw~~gl~f~A~ih~~Rpdli~~y~~-----lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~ 242 (890)
T KOG0035|consen 168 TSWKDGLAFCALIHRHRPDLIDQYDK-----LTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSS 242 (890)
T ss_pred ecccchHHHHHHHHhcChhhhhhhhh-----cCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhh
Confidence 4567899999999999999887 554 4455778999999999999 99999999999999999999999999999
Q ss_pred HHhhhC
Q 024596 113 YCDSVN 118 (265)
Q Consensus 113 f~d~n~ 118 (265)
||..--
T Consensus 243 ~~~~fS 248 (890)
T KOG0035|consen 243 YYHAFS 248 (890)
T ss_pred cccccc
Confidence 887543
No 26
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=44.25 E-value=61 Score=24.59 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHhHHH
Q 024596 197 DLLEKERDFYFAKLRDI 213 (265)
Q Consensus 197 e~LEkERDFYF~KLRdI 213 (265)
+..-+||+||..||++=
T Consensus 41 e~~~~e~~~~~~kf~Ea 57 (68)
T PF11577_consen 41 EKQKEEREFLERKFQEA 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556999999999864
No 27
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.34 E-value=36 Score=31.48 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHH
Q 024596 179 AQEVQALSKEITDLKLSVDL--------LEKERDFYFA 208 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~--------LEkERDFYF~ 208 (265)
..+++.|++|+.+|+-.+|. .|+.||+|=.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777766665 5678999953
No 28
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.62 E-value=50 Score=23.99 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEKERD 204 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEkERD 204 (265)
..++.++++++++++...+.|++|.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655544
No 29
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=42.47 E-value=82 Score=22.41 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhc
Q 024596 182 VQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQ 218 (265)
Q Consensus 182 i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ 218 (265)
|.+|.+|++.|+.++..|+. =|++-+..|++-.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~----~fs~yKKa~lFp~ 33 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA----AFSQYKKAELFPN 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCC
Confidence 46788899999999999887 5888888888743
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.45 E-value=39 Score=35.78 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=40.6
Q ss_pred hhcCCchhHhhhhhhhcCCCcccccccccCC---ChHHHHHHHHHHHHHHHhcCccc
Q 024596 35 EEAASGAVQCQMLDMTYPGVVPMHKVNFDAK---TEYDMIQNYKVLQDVFNKLKIEK 88 (265)
Q Consensus 35 Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~---~e~e~~~NfKiLQ~~f~k~~I~k 88 (265)
+.|.+|++.|+|.+.|.|-+|+---|-=-+. +..-+..|..=+=++-.|+||+.
T Consensus 599 aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpE 655 (722)
T KOG0532|consen 599 AALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPE 655 (722)
T ss_pred HHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCCh
Confidence 7889999999999999998776544332222 23457788887788889999865
No 31
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=41.86 E-value=40 Score=25.12 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEKERDFY 206 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEkERDFY 206 (265)
.++++.|.+++.+|...+..||.|-.++
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999997765
No 32
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.28 E-value=51 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 024596 183 QALSKEITDLKLSVDLLEKERD 204 (265)
Q Consensus 183 ~~L~~q~~elk~~ve~LEkERD 204 (265)
.++.+++.+|+..+..|+.|+|
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~d 95 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENE 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666
No 33
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.32 E-value=52 Score=31.62 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 024596 181 EVQALSKEITDLKLSVDLLEKERDFYFAKL 210 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERDFYF~KL 210 (265)
+++.|....++||.+++.||||=+ |+-+|
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~-ylKql 284 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIR-YLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 566788889999999999999977 65554
No 34
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.57 E-value=71 Score=22.37 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024596 181 EVQALSKEITDLKLSVDLLEKE 202 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkE 202 (265)
++..|..++..|+..++.|++|
T Consensus 33 ~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 33 EVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666666666666666655
No 35
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.60 E-value=4.4e+02 Score=26.51 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHHHhcCccccccccccccC-CCcchHHHHHHHHHHHhhhCCC
Q 024596 66 TEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKG-RPLDNLEFLQWLKRYCDSVNGG 120 (265)
Q Consensus 66 ~e~e~~~NfKiLQ~~f~k~~I~k~ipV~kLvkg-k~qdNlEFlQWfk~f~d~n~~~ 120 (265)
..|.|.+||.-|.+-|++-.--=.+..=..-|+ -|.|++|++.-+-.|..-+..+
T Consensus 256 ~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~~~~~ 311 (493)
T COG5236 256 IRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTELLEHLTRFHKVNARL 311 (493)
T ss_pred cchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEeccHHHHHHHHHHHhhccccc
Confidence 357899999999999998653222221111122 3678999999999887655443
No 36
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=34.10 E-value=38 Score=28.84 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccCCCcchHHHHHHH
Q 024596 70 MIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWL 110 (265)
Q Consensus 70 ~~~NfKiLQ~~f~k~~I~k~ipV~kLvkgk~qdNlEFlQWf 110 (265)
-..|++.||..++.++-+..||...|.+|....=+.|+...
T Consensus 2 l~~~l~~L~~~Lr~~~yp~~vd~~~l~~G~p~afLpil~~~ 42 (131)
T PF15007_consen 2 LKGNLRRLEQELRSLKYPDEVDYQGLYKGDPSAFLPILHYA 42 (131)
T ss_pred hhhHHHHHHHHHHHCCCCCccCHHHHhcCCHHHHHHHHHHH
Confidence 35799999999999999999999999999988767666653
No 37
>PF09701 Cas_Cmr5: CRISPR-associated protein (Cas_Cmr5); InterPro: IPR010160 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a family of Cas proteins as represented by TM1791.1 from Thermotoga maritima. This family of Cas proteins are found in both archaeal and bacterial species.; PDB: 2OEB_A 2ZOP_A.
Probab=32.42 E-value=33 Score=27.95 Aligned_cols=15 Identities=47% Similarity=1.190 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHhh
Q 024596 102 DNLEFLQWLKRYCDS 116 (265)
Q Consensus 102 dNlEFlQWfk~f~d~ 116 (265)
+-|+|+.|+|+|.++
T Consensus 106 e~La~l~WlKRfAea 120 (122)
T PF09701_consen 106 EALAFLNWLKRFAEA 120 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 368999999999875
No 38
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.49 E-value=1.1e+02 Score=28.26 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHH
Q 024596 188 EITDLKLSVDLLEKERDFYFAKLRDIE 214 (265)
Q Consensus 188 q~~elk~~ve~LEkERDFYF~KLRdIE 214 (265)
-|+|++...+.|..||.++=+-||+|.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999874
No 39
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=31.25 E-value=1.6e+02 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.518 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHhHHHHHHhc
Q 024596 178 SAQEVQALSKEITDLKLSVDLLEK--ERDFYFAKLRDIEILCQ 218 (265)
Q Consensus 178 ~~~~i~~L~~q~~elk~~ve~LEk--ERDFYF~KLRdIEiLcQ 218 (265)
-..++..|.+++..+-..+|-|.. .|||=| ++..|-+..
T Consensus 38 r~~qlrqllekVqNmSqsievL~~RT~rdlqy--v~~~E~~mk 78 (101)
T PF12308_consen 38 RSRQLRQLLEKVQNMSQSIEVLDLRTQRDLQY--VRKMETQMK 78 (101)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHH
Confidence 356788888998888877777654 889866 334444433
No 40
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=30.54 E-value=70 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHhc
Q 024596 183 QALSKEITDLKLSVDLLEKER-DFYFAKLRDIEILCQ 218 (265)
Q Consensus 183 ~~L~~q~~elk~~ve~LEkER-DFYF~KLRdIEiLcQ 218 (265)
+-+.++++.|+..+-.-+++| |-||.-+|+||-=.+
T Consensus 165 D~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~ 201 (302)
T PF07586_consen 165 DLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQ 201 (302)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777 899999999998543
No 41
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.22 E-value=21 Score=34.17 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=74.5
Q ss_pred ccCHHHHHHHhHhhhcCCcch------------------hhhcCCchhHhhhhhhh---cCCCcccccccccCCChHHHH
Q 024596 13 FVGRNELLTWINNRLQLHLSR------------------IEEAASGAVQCQMLDMT---YPGVVPMHKVNFDAKTEYDMI 71 (265)
Q Consensus 13 ~~sR~eLL~WiN~~L~~~~~k------------------IEel~sGaayCQlmd~l---~Pg~v~l~kVkf~a~~e~e~~ 71 (265)
|..=-|.++|+-.....+|.. +...+.|++-|-+.+.. .|+. .+ +.....+.
T Consensus 101 ~qDNlEF~qWfkkffd~~~~g~~yd~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~p~~----~~---~~~~~~~~ 173 (295)
T KOG3000|consen 101 FQDNLEFLQWFKKFFDANYGGKGYDALARREGIGIGRSAISEGSKGVSAPKILSPVSSAAPQN----FV---PARTPQTL 173 (295)
T ss_pred ccchHHHHHHHHHHhhccCCccccCHHHHhhcccccccCccccccccccccccccccccCccc----CC---CccCcccc
Confidence 444568999999999988865 67788888888884443 3442 12 67788888
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCC
Q 024596 72 QNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNG 119 (265)
Q Consensus 72 ~NfKiLQ~~f~k~~I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~ 119 (265)
.|-+.-+..+.+-.+..+ ++.++ .|++.++-||++.+...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~~----~qe~~~l~~~l~~~~~~~~~ 216 (295)
T KOG3000|consen 174 RNNKPCVEFGGKPNIALY-PVDKL----KQELEELTQQLTELKTTIAS 216 (295)
T ss_pred cCCCCCcccccccccccc-cchhh----hHHHHHHHHHHHHHHHhhhh
Confidence 999999988888888888 88888 79999999999998766533
No 42
>smart00338 BRLZ basic region leucin zipper.
Probab=29.08 E-value=1.6e+02 Score=21.15 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024596 180 QEVQALSKEITDLKLSVDLLEKERDFY 206 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~LEkERDFY 206 (265)
.++..|.++..+|+..++.|+.|-.-+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888876544
No 43
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=28.22 E-value=87 Score=31.97 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 024596 177 NSAQEVQALSKEITDLKLSVDLLEKE 202 (265)
Q Consensus 177 ~~~~~i~~L~~q~~elk~~ve~LEkE 202 (265)
....+|++|++|++.|+.+|..||++
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999884
No 44
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.56 E-value=1e+02 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024596 180 QEVQALSKEITDLKLSVDLLEKE 202 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~LEkE 202 (265)
+.+++|..++.+|...|+.|..|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777665
No 45
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.92 E-value=2.5e+02 Score=21.78 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCCC
Q 024596 180 QEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPE 221 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e 221 (265)
..|++|+..+.|....++.+..-=+.-.+||.+.+--.+++.
T Consensus 22 ~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~ 63 (72)
T COG2900 22 QTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIASP 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 357889999999999999999888899999999988777654
No 46
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.80 E-value=1.2e+02 Score=25.52 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 024596 181 EVQALSKEITDLKLSVDLLEKER 203 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkER 203 (265)
+++-|++|+.||......||+|-
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555553
No 47
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=24.50 E-value=1.4e+02 Score=23.46 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024596 176 ANSAQEVQALSKEITDLKLSVDLLEKERD 204 (265)
Q Consensus 176 ~~~~~~i~~L~~q~~elk~~ve~LEkERD 204 (265)
-.+.+.+.++..++.+|--.++.||..|+
T Consensus 21 c~s~aK~dqlss~vq~LnAkv~qLe~dv~ 49 (78)
T COG4238 21 CSSNAKIDQLSSDVQTLNAKVDQLENDVN 49 (78)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999998765
No 48
>PRK07857 hypothetical protein; Provisional
Probab=24.24 E-value=2.6e+02 Score=22.99 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 024596 177 NSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDI 213 (265)
Q Consensus 177 ~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdI 213 (265)
.....++++.+|+.++...+-.|=.||-=+=.+.-.+
T Consensus 25 ~~~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~ 61 (106)
T PRK07857 25 LSDAEIDELREEIDRLDAEILALVKRRTEVSQAIGKA 61 (106)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788899999999988888888887554444433
No 49
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.08 E-value=96 Score=30.67 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024596 178 SAQEVQALSKEITDLKLSVDLLEKERD 204 (265)
Q Consensus 178 ~~~~i~~L~~q~~elk~~ve~LEkERD 204 (265)
-+++-+.|.+|+++|+..++.||.|+-
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 366778899999999999999988763
No 50
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.27 E-value=1.5e+02 Score=28.82 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhH
Q 024596 188 EITDLKLSVDLLEKERDFYFAKLR 211 (265)
Q Consensus 188 q~~elk~~ve~LEkERDFYF~KLR 211 (265)
++..+....+.+..|||+|=.|--
T Consensus 148 d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 148 DLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445567789999998854
No 51
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.82 E-value=85 Score=32.21 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 024596 181 EVQALSKEITDLKLSVDLLEKERD 204 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERD 204 (265)
+++.++ |+++|+.+++.|++|.+
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhc
Confidence 333344 77777777777777766
No 52
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=22.73 E-value=75 Score=23.39 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCccccccccccccCCCcchHHHHHHHHH
Q 024596 73 NYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKR 112 (265)
Q Consensus 73 NfKiLQ~~f~k~~I~k~ipV~kLvkgk~qdNlEFlQWfk~ 112 (265)
+.+.|++-+.+++.-..-|++.|+.---..-=+...||..
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 4567999999999988899999998766666788999854
No 53
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=22.49 E-value=3e+02 Score=20.11 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHhHHH
Q 024596 181 EVQALSKEITDLKLSVDLLE--------KERDFYFAKLRDI 213 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LE--------kERDFYF~KLRdI 213 (265)
.+.+....+.|....++.|| .+|..|-+|||+.
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~y 66 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSY 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44455555555555555555 4899999999875
No 54
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.02 E-value=2.8e+02 Score=22.01 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 024596 178 SAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDI 213 (265)
Q Consensus 178 ~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdI 213 (265)
..++++.+..++..|-..++.||+=-|--.++||.+
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 356888999999999999999999999999999864
No 55
>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.
Probab=20.93 E-value=70 Score=26.73 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHhcCc-ccc-ccccccccCCCc-------chHHHHHHHHHHHhhh
Q 024596 67 EYDMIQNYKVLQDVFNKLKI-EKH-IEVNKLVKGRPL-------DNLEFLQWLKRYCDSV 117 (265)
Q Consensus 67 e~e~~~NfKiLQ~~f~k~~I-~k~-ipV~kLvkgk~q-------dNlEFlQWfk~f~d~n 117 (265)
+..|..=+..|...+.+.++ ++. -.++.|+.+.++ .-|+++.|+|+|-++.
T Consensus 65 ~~~y~~l~~~l~~~L~~~~~~~~~~~l~~~il~~~~~~y~~~T~eaL~~l~WLKRfAea~ 124 (127)
T TIGR01881 65 ETSYTKYYAHILYWLKERELVDKFKNALKELMEKDYSDSRIATEEALRYLNWLKRLAEAL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788888888764 322 357777777554 3578999999998864
No 56
>PF14152 YfhE: YfhE-like protein
Probab=20.79 E-value=34 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=13.5
Q ss_pred HHHHHhhhhhccccch
Q 024596 227 VRISGLLILIILHFSL 242 (265)
Q Consensus 227 ~~~~I~~ILYaT~~~~ 242 (265)
.+...|+|+|+.|++.
T Consensus 11 ~L~~aQEV~Y~~eFK~ 26 (37)
T PF14152_consen 11 TLSSAQEVLYQREFKK 26 (37)
T ss_pred chhHHHHHHHHHHHHH
Confidence 5788999999999864
No 57
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=20.41 E-value=4e+02 Score=20.37 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=53.1
Q ss_pred HHHHHHhHhhhcCCcchhhhcCC-----chhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccccc
Q 024596 17 NELLTWINNRLQLHLSRIEEAAS-----GAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIE 91 (265)
Q Consensus 17 ~eLL~WiN~~L~~~~~kIEel~s-----GaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ip 91 (265)
..++.||++-+..+ ..|++++. -...++++-..+ ..+..+|+..+|+.... ..+. ....+
T Consensus 8 ~~~~~~i~~~~~~~-~~~~~lA~~~~~S~~~l~r~f~~~~------------g~s~~~~i~~~Rl~~a~-~~L~-~~~~~ 72 (107)
T PRK10219 8 QTLIAWIDEHIDQP-LNIDVVAKKSGYSKWYLQRMFRTVT------------HQTLGDYIRQRRLLLAA-VELR-TTERP 72 (107)
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHCCCHHHHHHHHHHHH------------CcCHHHHHHHHHHHHHH-HHHH-ccCCC
Confidence 35677888777654 36666642 222334444443 35678999999986654 3332 12345
Q ss_pred ccccc-cCCCcchHHHHHHHHHHHh
Q 024596 92 VNKLV-KGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 92 V~kLv-kgk~qdNlEFlQWfk~f~d 115 (265)
|..+. ...|.|---|-+.||+++-
T Consensus 73 i~~iA~~~Gf~~~s~f~~~Fk~~~G 97 (107)
T PRK10219 73 IFDIAMDLGYVSQQTFSRVFRRQFD 97 (107)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHC
Confidence 55443 5689999999999999974
No 58
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.21 E-value=74 Score=32.60 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEK 201 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEk 201 (265)
.++|++|++|+++||.+++.|.+
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 55999999999999999887765
No 59
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=20.06 E-value=54 Score=33.69 Aligned_cols=11 Identities=64% Similarity=1.147 Sum_probs=9.1
Q ss_pred chHHHHHHHHH
Q 024596 102 DNLEFLQWLKR 112 (265)
Q Consensus 102 dNlEFlQWfk~ 112 (265)
-|+|||||.|.
T Consensus 323 rnyeflqwykd 333 (753)
T KOG0464|consen 323 RNYEFLQWYKD 333 (753)
T ss_pred cchHHHhhhhh
Confidence 49999999764
Done!