Query 024596
Match_columns 265
No_of_seqs 161 out of 426
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r8u_A Microtubule-associated 100.0 7.5E-88 2.6E-92 615.7 12.2 238 1-241 1-252 (268)
2 4abo_I MAL3, microtubule integ 100.0 9.6E-60 3.3E-64 396.6 10.3 119 13-135 5-123 (145)
3 1wyo_A Protein EB3, microtubul 100.0 5.1E-58 1.7E-62 391.8 14.5 132 1-135 8-140 (159)
4 2qjx_A Protein BIM1; calponin 100.0 6.8E-57 2.3E-61 372.6 10.3 122 8-133 4-125 (127)
5 2qjz_A Microtubule-associated 100.0 2.2E-56 7.6E-61 367.7 10.9 121 10-133 1-121 (123)
6 3tq7_B Microtubule-associated 99.9 2.1E-25 7.2E-30 171.9 5.3 61 181-241 2-62 (82)
7 4e61_A Protein BIM1; EB1-like 99.9 1.3E-23 4.5E-28 168.5 4.1 65 177-241 15-102 (106)
8 3mtu_A Tropomyosin alpha-1 cha 99.8 1.2E-21 4.1E-26 148.5 7.0 61 181-241 10-70 (75)
9 1wjo_A T-plastin; CH domain, a 98.8 2.4E-08 8.2E-13 82.0 8.4 100 12-111 5-111 (124)
10 2d89_A EHBP1 protein; all alph 98.7 7.1E-08 2.4E-12 77.9 8.2 102 10-117 5-112 (119)
11 2d87_A Smoothelin splice isofo 98.6 8E-08 2.8E-12 78.7 7.7 97 13-115 6-109 (128)
12 1bkr_A Spectrin beta chain; fi 98.5 1.4E-07 4.8E-12 75.1 6.1 94 15-115 4-104 (109)
13 1wyq_A Spectrin beta chain, br 98.5 2.4E-07 8.1E-12 75.7 7.1 97 14-116 7-112 (127)
14 1wyl_A NEDD9 interacting prote 98.4 4.5E-07 1.5E-11 72.8 6.9 94 14-114 7-109 (116)
15 1bhd_A Utrophin; calponin homo 98.4 1.7E-07 5.9E-12 75.6 4.1 96 14-116 8-110 (118)
16 2yrn_A Neuron navigator 2 isof 98.3 9.4E-07 3.2E-11 71.7 6.5 99 16-116 20-125 (129)
17 1h67_A Calponin alpha; cytoske 98.2 1.5E-06 5E-11 68.8 5.5 81 16-99 5-89 (108)
18 2d88_A Protein mical-3; all al 98.2 3.8E-06 1.3E-10 67.9 8.0 94 14-114 9-113 (121)
19 3i6x_A P195, RAS GTPase-activa 98.2 1.9E-06 6.7E-11 75.1 6.0 103 12-114 45-161 (193)
20 1sh5_A Plectin 1, PLTN, PCN; a 98.2 1.7E-06 5.8E-11 76.7 5.7 96 16-117 135-239 (245)
21 1wyr_A RHO guanine nucleotide 98.2 3.2E-06 1.1E-10 68.4 6.4 96 15-113 7-113 (121)
22 1ujo_A Transgelin; CH domain, 98.1 5E-06 1.7E-10 69.1 7.7 99 16-116 11-123 (144)
23 2ee7_A Sperm flagellar protein 98.1 1.1E-05 3.8E-10 66.3 8.9 113 2-116 3-120 (127)
24 1p2x_A RNG2 protein, RAS GTPas 98.1 3.1E-06 1.1E-10 71.4 5.7 86 12-99 9-100 (159)
25 2l3g_A RHO guanine nucleotide 98.1 6.2E-06 2.1E-10 67.4 7.0 81 16-99 14-105 (126)
26 1wku_A Alpha-actinin 3; calpon 98.1 9.2E-06 3.1E-10 72.7 8.4 97 14-116 140-246 (254)
27 1p5s_A RAS GTPase-activating-l 98.1 5E-06 1.7E-10 72.9 6.3 83 15-99 56-144 (203)
28 1wym_A Transgelin-2; CH domain 98.0 9.3E-06 3.2E-10 68.2 6.8 103 8-113 10-127 (155)
29 1wyp_A Calponin 1; CH domain, 98.0 1.2E-05 4E-10 66.3 6.9 88 9-99 11-103 (136)
30 1dxx_A Dystrophin; structural 98.0 3.6E-06 1.2E-10 74.8 4.1 96 15-114 136-239 (246)
31 1aoa_A T-fimbrin; actin-bindin 98.0 8.6E-06 2.9E-10 73.4 6.6 96 15-110 169-273 (275)
32 1wyn_A Calponin-2; CH domain, 98.0 1.4E-05 4.8E-10 66.6 7.1 104 8-114 10-119 (146)
33 2vzc_A Alpha-parvin; membrane, 98.0 2.1E-05 7.2E-10 64.4 7.8 92 16-107 24-120 (131)
34 2wa7_A Filamin-B; disease muta 97.9 2.4E-05 8.3E-10 69.5 8.3 95 14-115 143-242 (245)
35 1pxy_A Fimbrin-like protein; c 97.9 1.8E-05 6.3E-10 76.9 7.5 100 13-113 396-502 (506)
36 1rt8_A Fimbrin; filamentous ac 97.9 2.4E-05 8.1E-10 76.3 7.4 93 13-106 407-506 (513)
37 2rr8_A Iqgap1 protein; F-actin 97.8 1.5E-05 5E-10 69.2 5.0 101 15-115 26-140 (190)
38 1pxy_A Fimbrin-like protein; c 97.8 2E-05 7E-10 76.6 5.3 95 15-114 153-253 (506)
39 1aoa_A T-fimbrin; actin-bindin 97.7 6.5E-05 2.2E-09 67.6 7.1 98 16-113 26-138 (275)
40 3f7p_A Plectin-1; plakin, hemi 97.6 3.6E-05 1.2E-09 71.0 4.9 94 16-115 191-290 (296)
41 1rt8_A Fimbrin; filamentous ac 97.6 3.9E-05 1.3E-09 74.8 5.3 93 16-113 163-261 (513)
42 3hoc_A Filamin-A; calponin hom 97.6 6E-05 2E-09 68.6 6.1 95 14-115 170-269 (272)
43 4b7l_A Filamin-B; structural p 97.6 0.00012 4.1E-09 68.4 8.2 114 12-133 138-259 (347)
44 2wa7_A Filamin-B; disease muta 97.4 0.00022 7.4E-09 63.3 6.3 92 15-107 21-117 (245)
45 1wku_A Alpha-actinin 3; calpon 97.2 0.00037 1.3E-08 62.3 6.0 95 16-113 29-129 (254)
46 1sh5_A Plectin 1, PLTN, PCN; a 97.1 0.0014 4.9E-08 57.7 8.1 95 16-114 14-119 (245)
47 3hoc_A Filamin-A; calponin hom 97.1 0.0011 3.9E-08 60.1 7.5 99 16-115 49-152 (272)
48 1sjj_A Actinin; 3-helix bundle 97.0 0.00044 1.5E-08 69.9 4.8 96 15-117 122-225 (863)
49 3f7p_A Plectin-1; plakin, hemi 96.9 0.0017 5.9E-08 59.7 7.4 94 16-113 75-174 (296)
50 1dxx_A Dystrophin; structural 96.9 0.0019 6.3E-08 57.2 6.8 89 15-107 17-111 (246)
51 1sjj_A Actinin; 3-helix bundle 96.3 0.004 1.4E-07 62.9 5.8 81 16-99 10-95 (863)
52 3ky9_A Proto-oncogene VAV; cal 96.3 0.009 3.1E-07 58.6 7.8 84 16-99 7-106 (587)
53 4b7l_A Filamin-B; structural p 96.0 0.019 6.4E-07 53.6 8.4 98 17-115 20-122 (347)
54 1wix_A HOOK homolog 1, RSGI RU 95.2 0.03 1E-06 47.3 5.9 51 6-56 1-52 (164)
55 3qh9_A Liprin-beta-2; coiled-c 80.3 3.3 0.00011 31.5 5.5 33 181-213 20-52 (81)
56 1ci6_A Transcription factor AT 63.3 13 0.00044 26.3 5.0 34 179-212 29-62 (63)
57 2wt7_B Transcription factor MA 58.0 15 0.00052 28.2 4.9 32 181-212 56-87 (90)
58 1m5i_A APC protein; coiled-coi 57.7 17 0.00059 29.5 5.3 38 182-219 9-46 (125)
59 2yy0_A C-MYC-binding protein; 57.6 20 0.00069 24.7 5.0 28 178-205 17-44 (53)
60 2xdj_A Uncharacterized protein 39.4 43 0.0015 25.1 4.7 28 180-207 27-62 (83)
61 1a93_B MAX protein, coiled coi 31.8 39 0.0013 21.7 2.8 20 180-199 14-33 (34)
62 1hjb_A Ccaat/enhancer binding 28.8 99 0.0034 23.4 5.2 35 180-220 43-77 (87)
63 1m7k_A Silencer of death domai 26.7 97 0.0033 24.1 4.9 58 177-237 21-94 (99)
64 2zop_A Putative uncharacterize 25.2 34 0.0012 26.8 2.1 17 102-118 96-112 (114)
65 1go4_E MAD1 (mitotic arrest de 25.0 54 0.0019 25.6 3.2 17 188-204 13-29 (100)
66 3brv_B NF-kappa-B essential mo 23.4 1.4E+02 0.0049 21.9 4.9 33 184-216 23-62 (70)
67 1dip_A Delta-sleep-inducing pe 23.3 55 0.0019 24.5 2.7 27 179-205 14-40 (78)
68 1jcd_A Major outer membrane li 23.1 85 0.0029 21.7 3.5 23 179-201 3-25 (52)
69 2oeb_A Hypothetical protein; u 22.5 40 0.0014 28.1 2.1 17 103-119 136-152 (155)
70 4dzn_A Coiled-coil peptide CC- 21.9 1.3E+02 0.0043 18.7 3.7 19 181-199 3-21 (33)
71 2wt7_A Proto-oncogene protein 21.2 2.1E+02 0.0072 19.7 5.6 25 180-204 30-54 (63)
72 2ve7_A Kinetochore protein HEC 21.1 77 0.0026 28.8 3.9 25 179-203 184-208 (315)
73 3trt_A Vimentin; cytoskeleton, 20.3 1.2E+02 0.004 21.5 4.1 22 181-202 50-71 (77)
74 2e62_A Protein AT5G25060; CWF2 20.1 42 0.0014 24.1 1.5 12 208-219 16-27 (61)
No 1
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=100.00 E-value=7.5e-88 Score=615.66 Aligned_cols=238 Identities=39% Similarity=0.597 Sum_probs=128.2
Q ss_pred CCccc-ccccCCCccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHH
Q 024596 1 MATNI-GMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQD 79 (265)
Q Consensus 1 ~~~~~-g~m~~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~ 79 (265)
||.|| |||+.++++||+|||+|||++|+++|+||||||||||||||||+||||+|||+||||+|++||||++||||||+
T Consensus 1 ma~nv~~t~~~~~~~sR~elL~WiN~~L~~~~~kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~ 80 (268)
T 2r8u_A 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA 80 (268)
T ss_dssp CCCCCCTTSCCCCCCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHH
T ss_pred CceeEecccCcccccCHHHHHHHHHHHhcCCcchHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHH
Confidence 89999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCC--CCCCC--CCCCccc--cc
Q 024596 80 VFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKER--SSRGS--QKISKSL--QT 153 (265)
Q Consensus 80 ~f~k~~I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~g~~~--~~~~~--~~~~~s~--~~ 153 (265)
+|+|+||+|+|||++|||||||||||||||||+|||+|++| ++|||++||.+.+.+. +..++ ++++++. ++
T Consensus 81 ~F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~~---~~Yd~~~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (268)
T 2r8u_A 81 GFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSS 157 (268)
T ss_dssp HHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHTC--------------------------
T ss_pred HHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHcCCC---CCCCHHHHhcCCCCCCCCCCCcccccCCCCcccccc
Confidence 99999999999999999999999999999999999999986 6999999996432211 11000 1111111 00
Q ss_pred CCCCCCCC----CCCCCCCCcc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCCCCCChh
Q 024596 154 NNMHNAGS----GDIGHRPRQA---KIYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLP 226 (265)
Q Consensus 154 ~~~~~~~s----~~~~~~~~p~---~~~~~~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e~e~~~ 226 (265)
++++.+.+ ...++.+.+. +...+.+..++.++.+|+++||+++++|||||||||+||||||||||+++.++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~lk~~v~~lEkERDFYF~KLRdIEilcQe~~~~~~~ 237 (268)
T 2r8u_A 158 AAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDP 237 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCcccccCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccH
Confidence 00000000 0000000000 0112334556889999999999999999999999999999999999999888889
Q ss_pred HHHHHhhhhhccccc
Q 024596 227 VRISGLLILIILHFS 241 (265)
Q Consensus 227 ~~~~I~~ILYaT~~~ 241 (265)
++++|++|||+||+.
T Consensus 238 ~~~~I~~ILYaTeeg 252 (268)
T 2r8u_A 238 VLQRIVDILYATDEG 252 (268)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhccccC
Confidence 999999999999985
No 2
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-60 Score=396.56 Aligned_cols=119 Identities=41% Similarity=0.712 Sum_probs=114.1
Q ss_pred ccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccccccc
Q 024596 13 FVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEV 92 (265)
Q Consensus 13 ~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ipV 92 (265)
..||+|||+|||++|+++|+||||||||||||||||+|| |+|||+||||+|++||||++||||||++|+|+||+|+|||
T Consensus 5 ~~SR~eLL~WiN~~L~~n~tkIE~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ipV 83 (145)
T 4abo_I 5 SESRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDP 83 (145)
T ss_dssp --CHHHHHHHHHHHHTCCCCSGGGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCCCCH
T ss_pred cccHHHHHHHHHHHcCCCcchHHHccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCccCH
Confidence 459999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccC
Q 024596 93 NKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKG 135 (265)
Q Consensus 93 ~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~ 135 (265)
++|||||||||||||||||+|||+|+++ ++|||++||.+.
T Consensus 84 ~kLvKgk~QDNlEFlQWfkkf~d~n~~~---~~YD~~~~R~g~ 123 (145)
T 4abo_I 84 ERLSRCKMQDNLEFVQWAKRFWDQYYPG---GDYDALARRGNR 123 (145)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHCCS---SCCCHHHHHTCC
T ss_pred HHHhccchHhHHHHHHHHHHHHHhcCCC---CCCCHHHhcCCC
Confidence 9999999999999999999999999986 689999999643
No 3
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5.1e-58 Score=391.79 Aligned_cols=132 Identities=42% Similarity=0.783 Sum_probs=128.6
Q ss_pred CCccc-ccccCCCccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHH
Q 024596 1 MATNI-GMMDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQD 79 (265)
Q Consensus 1 ~~~~~-g~m~~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~ 79 (265)
||.|| |||+.+.+.||+|||+|||++|+++|+|||+||+||+||||||+||||+|||+||||+++.||||++|||+||+
T Consensus 8 ~~~nv~~t~~~~~~~sr~ElL~WIN~~L~~~~~kiE~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~ 87 (159)
T 1wyo_A 8 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQA 87 (159)
T ss_dssp CCCCCCCCSSCCCCCCHHHHHHHHHHHSCCCCSSGGGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHH
T ss_pred hheeeeeccCCCCchhHHHHHHHHHHHHCCCCchhhhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHH
Confidence 78888 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccC
Q 024596 80 VFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKG 135 (265)
Q Consensus 80 ~f~k~~I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~ 135 (265)
+|+|+||+|+|||++|||||||||||||||||+|||+|+++ ++|||++||.+.
T Consensus 88 af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~---~~Yd~~~~R~~~ 140 (159)
T 1wyo_A 88 AFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG---KDYNPLLARQGQ 140 (159)
T ss_dssp HHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS---CCCCTTGGGCCC
T ss_pred HHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC---CCCCHHHHhCCC
Confidence 99999999999999999999999999999999999999986 699999999643
No 4
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-57 Score=372.60 Aligned_cols=122 Identities=43% Similarity=0.749 Sum_probs=112.7
Q ss_pred ccCCCccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcc
Q 024596 8 MDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIE 87 (265)
Q Consensus 8 m~~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~ 87 (265)
|+....+||+|||+|||++|+++|+||||||||||||||||+|| |+|||+||||+|++||||++|||+||++|+|++|+
T Consensus 4 ~~~~~~~sR~elL~WiN~~L~~n~~kiEel~tGaayCQl~d~l~-g~v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~ 82 (127)
T 2qjx_A 4 MSAGIGESRTELLTWLNGLLNLNYKKIEECGTGAAYCQIMDSIY-GDLPMNRVKFNATAEYEFQTNYKILQSCFSRHGIE 82 (127)
T ss_dssp -------CHHHHHHHHHHHHTCCCCSGGGGGGSHHHHHHHHHHH-CCSCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccccCHHHHHHHHHHHHcCCccHHHHccchHHHHHHHhhhc-cccCccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 44346679999999999999999999999999999999999999 67999999999999999999999999999999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhc
Q 024596 88 KHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRC 133 (265)
Q Consensus 88 k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~ 133 (265)
|+|||++|||||||||||||||||+|||+|++| ++|||++||.
T Consensus 83 k~ipV~kLvKgrfQDNlEFlQWfkkf~d~n~~g---~~YDa~~~R~ 125 (127)
T 2qjx_A 83 KTVYVDKLIRCKFQDNLEFLQWLKKHWIRHKDE---SVYDPDARRK 125 (127)
T ss_dssp CCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCS---SCCCHHHHTT
T ss_pred CccCHHHHhccCchhHHHHHHHHHHHHHhcCCC---CCCCHHHhhc
Confidence 999999999999999999999999999999986 6999999995
No 5
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=100.00 E-value=2.2e-56 Score=367.67 Aligned_cols=121 Identities=45% Similarity=0.847 Sum_probs=117.1
Q ss_pred CCCccCHHHHHHHhHhhhcCCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc
Q 024596 10 SAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH 89 (265)
Q Consensus 10 ~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ 89 (265)
+++++||+|||+|||++|+++|+|||+||+|||||||||+||||+|||+||||+++.|+||++|||+||++|+|+||+|+
T Consensus 1 ~~~~~sr~ElL~WIN~~L~~~~~kiE~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~ 80 (123)
T 2qjz_A 1 GSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI 80 (123)
T ss_dssp --CCCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCccccHHHHHHHHHHHHCCCCchHHHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhc
Q 024596 90 IEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRC 133 (265)
Q Consensus 90 ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~ 133 (265)
|||++|||||||||||||||||+|||+|+++ ++|||++||.
T Consensus 81 i~v~kLvkgk~qdnleflqW~k~f~d~n~~~---~~Yd~~~~R~ 121 (123)
T 2qjz_A 81 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAARQ 121 (123)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHTS
T ss_pred cCHHHHHcCCchhHHHHHHHHHHHHHHcCCC---CCCCHHHhhC
Confidence 9999999999999999999999999999986 6999999995
No 6
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=99.91 E-value=2.1e-25 Score=171.91 Aligned_cols=61 Identities=51% Similarity=0.736 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCCCCCChhHHHHHhhhhhccccc
Q 024596 181 EVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFS 241 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e~e~~~~~~~I~~ILYaT~~~ 241 (265)
++.+|++|+++|++++++|||||||||+||||||+|||+++.++.+++++|++|||||++.
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTeeg 62 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEG 62 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHTCCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccC
Confidence 5778999999999999999999999999999999999998877778999999999999975
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-23 Score=168.50 Aligned_cols=65 Identities=38% Similarity=0.440 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCCCC-----------------------CChhHHHHHhh
Q 024596 177 NSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPEL-----------------------ENLPVRISGLL 233 (265)
Q Consensus 177 ~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e~-----------------------e~~~~~~~I~~ 233 (265)
.+.+++++|++|+++|++++++||+||||||+||||||+|||+... +..+++++|++
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ 94 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVES 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHH
Confidence 3466889999999999999999999999999999999999997421 12478999999
Q ss_pred hhhccccc
Q 024596 234 ILIILHFS 241 (265)
Q Consensus 234 ILYaT~~~ 241 (265)
|||||++.
T Consensus 95 ILYaTeeG 102 (106)
T 4e61_A 95 ILYATAEG 102 (106)
T ss_dssp HHHHHHHT
T ss_pred HHhccccc
Confidence 99999874
No 8
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=99.85 E-value=1.2e-21 Score=148.50 Aligned_cols=61 Identities=34% Similarity=0.453 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCCCCCChhHHHHHhhhhhccccc
Q 024596 181 EVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISGLLILIILHFS 241 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e~e~~~~~~~I~~ILYaT~~~ 241 (265)
.++.|+.+..++..++++||+||||||+|||+||+|||+++.+..+++++|++|||||++.
T Consensus 10 kmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~ 70 (75)
T 3mtu_A 10 KMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEG 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcC
Confidence 4567888999999999999999999999999999999999888889999999999999874
No 9
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.75 E-value=2.4e-08 Score=81.95 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=84.8
Q ss_pred CccCHHHHHHHhHhhhcC-----Ccchhh--hcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhc
Q 024596 12 YFVGRNELLTWINNRLQL-----HLSRIE--EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKL 84 (265)
Q Consensus 12 ~~~sR~eLL~WiN~~L~~-----~~~kIE--el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~ 84 (265)
--+++.+||.|+|..|+. +++... ++++|.+||+|+|.|-|+.|+..-|+=..-++.|-..|.+..=++-+|+
T Consensus 5 ~~i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~Arkl 84 (124)
T 1wjo_A 5 SSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRI 84 (124)
T ss_dssp CCSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 457899999999999863 455554 8889999999999999999998877643447899999999988888999
Q ss_pred CccccccccccccCCCcchHHHHHHHH
Q 024596 85 KIEKHIEVNKLVKGRPLDNLEFLQWLK 111 (265)
Q Consensus 85 ~I~k~ipV~kLvkgk~qdNlEFlQWfk 111 (265)
|+...+..|.++.|+..-++-|+.=+.
T Consensus 85 G~~~~l~pEDIve~~pK~ilt~va~l~ 111 (124)
T 1wjo_A 85 GARVYALPEDLVEVKPKMVMTVFACLM 111 (124)
T ss_dssp CCSCCCCHHHHHHTCTTTTTHHHHHHH
T ss_pred CCCcccCHHHHhcCcchhhHHHHHHHH
Confidence 999999999999999988988774443
No 10
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=7.1e-08 Score=77.87 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=78.3
Q ss_pred CCCccCHHHHHHHhHhhhcCCc--chhh----hcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh
Q 024596 10 SAYFVGRNELLTWINNRLQLHL--SRIE----EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK 83 (265)
Q Consensus 10 ~~~~~sR~eLL~WiN~~L~~~~--~kIE----el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k 83 (265)
+.-...+..||.|+|..+.. | .+|. ...+|-|+|.|+|.+.|+.|++..++- .+-++|.+..-++.++
T Consensus 5 ~~~~~~~~~LL~W~~~~~~~-y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~-----~~~~~n~~~af~~a~~ 78 (119)
T 2d89_A 5 SSGPNASQSLLVWCKEVTKN-YRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP-----QDIKENNKKAYDGFAS 78 (119)
T ss_dssp SSCCCCHHHHHHHHHHHTTT-CSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT-----TCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc-----cCHHHHHHHHHHHHHH
Confidence 34455789999999999853 2 1344 456899999999999999988776653 3557788776666699
Q ss_pred cCccccccccccccCCCcchHHHHHHHHHHHhhh
Q 024596 84 LKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSV 117 (265)
Q Consensus 84 ~~I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n 117 (265)
+||++.++.+.++.+...|-.-.+.++-.||...
T Consensus 79 LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~~f 112 (119)
T 2d89_A 79 IGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHF 112 (119)
T ss_dssp HTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHhccCCCcHHHHHHHHHHHHHHc
Confidence 9999999999999887777777777776666643
No 11
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=98.62 E-value=8e-08 Score=78.67 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=73.5
Q ss_pred ccCHHHHHHHhHhhhcCCc--chhh----hcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cC
Q 024596 13 FVGRNELLTWINNRLQLHL--SRIE----EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LK 85 (265)
Q Consensus 13 ~~sR~eLL~WiN~~L~~~~--~kIE----el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~ 85 (265)
.-.+..||.|+|..+.. | .+|. ...+|.|||.|+|.+.|+.|++..+. ..+-++|++..-++.++ +|
T Consensus 6 ~~~k~~LL~W~q~~~~~-y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lg 79 (128)
T 2d87_A 6 SGIKQMLLDWCRAKTRG-YEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLS-----PQNRRQNFEVAFSSAETHAD 79 (128)
T ss_dssp CCHHHHHHHHHHHHSSS-CTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSC-----SSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcC-----ccCHHHHHHHHHHHHHHcCC
Confidence 34588999999998863 2 1344 45889999999999999998877654 34567888877777776 79
Q ss_pred ccccccccccccCCCcchHHHHHHHHHHHh
Q 024596 86 IEKHIEVNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
|++.++.+.++.+.--|..-.+.++-.||.
T Consensus 80 ip~lL~peD~v~~~~pD~ksvmtYvs~l~~ 109 (128)
T 2d87_A 80 CPQLLDTEDMVRLREPDWKCVYTYIQEFYR 109 (128)
T ss_dssp CCCCSCHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHhccCCccHHHHHHHHHHHHH
Confidence 999999999999886665555555555544
No 12
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=98.51 E-value=1.4e-07 Score=75.06 Aligned_cols=94 Identities=14% Similarity=0.304 Sum_probs=68.4
Q ss_pred CHHHHHHHhHhhhcCCc--chhhhc----CCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHH-hcCcc
Q 024596 15 GRNELLTWINNRLQLHL--SRIEEA----ASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFN-KLKIE 87 (265)
Q Consensus 15 sR~eLL~WiN~~L~~~~--~kIEel----~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~-k~~I~ 87 (265)
.+..||.|+|..+.. | .+|... .+|-|+|.|++.+.|+.|++..+. ..+-.+|.+..-+..+ ++||+
T Consensus 4 ~k~~LL~W~q~~~~~-y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lgi~ 77 (109)
T 1bkr_A 4 AKDALLLWCQMKTAG-YPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLK-----KSNAHYNLQNAFNLAEQHLGLT 77 (109)
T ss_dssp HHHHHHHHHHHHTTT-CTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCC-----TTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcc-CCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcC-----cCCHHHHHHHHHHHHHHHcCCC
Confidence 478899999998752 3 234444 889999999999999998877764 3355777776666554 89999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHh
Q 024596 88 KHIEVNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 88 k~ipV~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
+.++.+.++.++. |-.-.+.++-.||.
T Consensus 78 ~ll~~eDv~~~~p-D~ksi~tYvs~~~~ 104 (109)
T 1bkr_A 78 KLLDPEDISVDHP-DEKSIITYVVTYYH 104 (109)
T ss_dssp CCCCHHHHSSSSC-CHHHHHHHHHHHHH
T ss_pred ccCCHHHccCCCC-cHHHHHHHHHHHHH
Confidence 9999999876654 54444444444443
No 13
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=98.49 E-value=2.4e-07 Score=75.71 Aligned_cols=97 Identities=10% Similarity=0.206 Sum_probs=71.4
Q ss_pred cCHHHHHHHhHhhhcCCc--chhhhc----CCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHH-hcCc
Q 024596 14 VGRNELLTWINNRLQLHL--SRIEEA----ASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFN-KLKI 86 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~~~~--~kIEel----~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~-k~~I 86 (265)
..+..||.|+|..+.- | .+|..+ .+|.|||.|+|.+.|+.|++..+.- .+-.+|++..-+..+ ++||
T Consensus 7 s~k~~LL~W~q~~~~~-y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~-----~~~~~n~~~af~~Ae~~Lgi 80 (127)
T 1wyq_A 7 GAKDALLLWCQMKTAG-YPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK-----CNAHYNLQNAFNLAEKELGL 80 (127)
T ss_dssp CSTHHHHHHHHHHHHT-SSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS-----SCCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhc-CCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc-----CCHHHHHHHHHHHHHHHcCC
Confidence 4688999999998752 2 134444 8899999999999999998877652 344678777666665 7999
Q ss_pred cccccccccccCCC--cchHHHHHHHHHHHhh
Q 024596 87 EKHIEVNKLVKGRP--LDNLEFLQWLKRYCDS 116 (265)
Q Consensus 87 ~k~ipV~kLvkgk~--qdNlEFlQWfk~f~d~ 116 (265)
++.++.+.++.++. .-++.|+.-|+.+|..
T Consensus 81 ~~ll~~eDv~~~~pDeksimtYvs~l~~~~~~ 112 (127)
T 1wyq_A 81 TKLLDPEDVNVDQPDEKSIITYVATYYHYFSK 112 (127)
T ss_dssp CCCSCTTTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 99999999887764 2355555555555543
No 14
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=98.41 E-value=4.5e-07 Score=72.83 Aligned_cols=94 Identities=20% Similarity=0.340 Sum_probs=70.6
Q ss_pred cCHHHHHHHhHhhhc-------CCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cC
Q 024596 14 VGRNELLTWINNRLQ-------LHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LK 85 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~-------~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~ 85 (265)
-.+..||.|+|..+. .|+++ ...+|-|+|-|+|.+.|+.|++..+. ..+-.+|.+..-++.++ +|
T Consensus 7 ~~~~~LL~W~q~~~~~y~~v~v~nFs~--sw~dG~af~aLih~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lg 79 (116)
T 1wyl_A 7 GTQEELLRWCQEQTAGYPGVHVSDLSS--SWADGLALCALVYRLQPGLLEPSELQ-----GLGALEATAWALKVAENELG 79 (116)
T ss_dssp SSHHHHHHHHHHHHHHSTTCCCSCTTT--TTTSSHHHHHHHHHHCTTSCCCSSGG-----GCCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCccc--cccccHHHHHHHHHHCcCCCCHHHhc-----cCCHHHHHHHHHHHHHHHcC
Confidence 457889999999874 23442 56889999999999999998877665 24567888887777777 99
Q ss_pred ccccccccccccC-CCcchHHHHHHHHHHH
Q 024596 86 IEKHIEVNKLVKG-RPLDNLEFLQWLKRYC 114 (265)
Q Consensus 86 I~k~ipV~kLvkg-k~qdNlEFlQWfk~f~ 114 (265)
|++.++.+.++.+ .-.-++.|+.-|+++|
T Consensus 80 i~~lL~peD~~~~~d~ksv~tYvs~l~~~~ 109 (116)
T 1wyl_A 80 ITPVVSAQAVVAGSDPLGLIAYLSHFHSAF 109 (116)
T ss_dssp CCCCSCHHHHHHTSCHHHHHHHHHHHHHHS
T ss_pred CccccCHHHHhcCCchhHHHHHHHHHHHHc
Confidence 9999999999988 3333445555444443
No 15
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=98.40 E-value=1.7e-07 Score=75.58 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred cCHHHHHHHhHhhhcCCc--chhhhc----CCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHH-HHhcCc
Q 024596 14 VGRNELLTWINNRLQLHL--SRIEEA----ASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDV-FNKLKI 86 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~~~~--~kIEel----~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~-f~k~~I 86 (265)
-.++.||.|+|..+. .| .+|... .+|-|||.|+|.+.|+.|++..+. ..+-.+|.+..-+. -+++||
T Consensus 8 ~~~~~LL~W~q~~~~-~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lgi 81 (118)
T 1bhd_A 8 NSEKILLSWVRQTTR-PYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV-----KMSPIERLEHAFSKAQTYLGI 81 (118)
T ss_dssp HHHHHHHHHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH-----HSCHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhc-cCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC-----cCCHHHHHHHHHHHHHHHcCC
Confidence 367889999999885 22 234444 589999999999999999877765 23446676654443 349999
Q ss_pred cccccccccccCCCcchHHHHHHHHHHHhh
Q 024596 87 EKHIEVNKLVKGRPLDNLEFLQWLKRYCDS 116 (265)
Q Consensus 87 ~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~ 116 (265)
++.++.+.++.++ .|-.-.+.++-.||..
T Consensus 82 ~~ll~~eDv~~~~-pD~ksvmtYvs~l~~~ 110 (118)
T 1bhd_A 82 EKLLDPEDVAVRL-PDKKSIIMYLTSLFEV 110 (118)
T ss_dssp CCCSCHHHHHTSC-CCHHHHHHHHHHHHHH
T ss_pred CcccCHHHhhcCC-CcHHHHHHHHHHHHHH
Confidence 9999999988765 4555555555555553
No 16
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=9.4e-07 Score=71.66 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=81.2
Q ss_pred HHHHHHHhHhhhcCC-----cch-hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-
Q 024596 16 RNELLTWINNRLQLH-----LSR-IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK- 88 (265)
Q Consensus 16 R~eLL~WiN~~L~~~-----~~k-IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k- 88 (265)
++.+..|||..|... +.. .++|.+|...|+|++.|-|+.|+ +++-.++.....++|....-+++++.||..
T Consensus 20 ~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~--~~~~~p~~~~~~~eNv~~aL~~~~~~gv~~~ 97 (129)
T 2yrn_A 20 KRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE--DINGCPKNRSQMIENIDACLNFLAAKGINIQ 97 (129)
T ss_dssp HHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT--TCCSSCCSTTHHHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc--cccCCCCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 468999999988532 333 37899999999999999999887 666567888999999999999999999976
Q ss_pred cccccccccCCCcchHHHHHHHHHHHhh
Q 024596 89 HIEVNKLVKGRPLDNLEFLQWLKRYCDS 116 (265)
Q Consensus 89 ~ipV~kLvkgk~qdNlEFlQWfk~f~d~ 116 (265)
.|..+.++.|+..--|-++--+-+||.+
T Consensus 98 ~i~~~DI~dgn~~~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 98 GLSAEEIRNGNLKAILGLFFSLSRYKQQ 125 (129)
T ss_dssp TCCHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCChhhhhcCCHhHHHHHHHHHHHHHhh
Confidence 6888899999887777777556666654
No 17
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=98.21 E-value=1.5e-06 Score=68.85 Aligned_cols=81 Identities=21% Similarity=0.459 Sum_probs=67.5
Q ss_pred HHHHHHHhHhhhcCCcc--hhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc--cc
Q 024596 16 RNELLTWINNRLQLHLS--RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH--IE 91 (265)
Q Consensus 16 R~eLL~WiN~~L~~~~~--kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~--ip 91 (265)
+.|+..|||..|+.++. =.+.|.+|++-|+|++.+.||+|+ |++ .++..+.+..|...+-++.+++|++.. +.
T Consensus 5 e~e~~~WIe~~l~~~~~~~l~~~L~dGvvLCkL~N~l~P~~v~--ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~ 81 (108)
T 1h67_A 5 ERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQ--KVN-DPVQNWHKLENIGNFLRAIKHYGVKPHDIFE 81 (108)
T ss_dssp SHHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSST--TCC-CTTSSHHHHHHHHHHHHHHHHHTSCGGGSCC
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc--ccc-ccccchHHHHHHHHHHHHHHHcCCCcccccC
Confidence 57999999999988763 357799999999999999999987 554 455678899999999999999999874 56
Q ss_pred ccccccCC
Q 024596 92 VNKLVKGR 99 (265)
Q Consensus 92 V~kLvkgk 99 (265)
...|..|+
T Consensus 82 ~~DL~e~k 89 (108)
T 1h67_A 82 ANDLFENT 89 (108)
T ss_dssp HHHHHHTC
T ss_pred hhHHHhCC
Confidence 67777765
No 18
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=98.21 E-value=3.8e-06 Score=67.90 Aligned_cols=94 Identities=16% Similarity=0.278 Sum_probs=69.6
Q ss_pred cCHHHHHHHhHhhhcC-------CcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHH-hcC
Q 024596 14 VGRNELLTWINNRLQL-------HLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFN-KLK 85 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~~-------~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~-k~~ 85 (265)
..+..||.|+|..+.. |++ ....+|-|||-|++.+.|+.|++..+. ..+-.+|.+..-+... ++|
T Consensus 9 ~~~~~LL~W~q~~~~~y~~v~v~nFs--~sw~DG~af~aLih~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lg 81 (121)
T 2d88_A 9 ARSSKLLGWCQRQTDGYAGVNVTDLT--MSWKSGLALCAIIHRYRPDLIDFDSLD-----EQNVEKNNQLAFDIAEKELG 81 (121)
T ss_dssp SSSCHHHHHHHHHSTTSSSCCCCCSS--HHHHTSHHHHHHHHHHCTTTSCTTTSC-----TTCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCch--hhccccHHHHHHHHHhCcCcCCHHHcC-----ccCHHHHHHHHHHHHHHHcC
Confidence 3467899999999852 333 256789999999999999998876654 3455788887766666 599
Q ss_pred ccccccccccccCCCcc---hHHHHHHHHHHH
Q 024596 86 IEKHIEVNKLVKGRPLD---NLEFLQWLKRYC 114 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qd---NlEFlQWfk~f~ 114 (265)
|++.++.+.++.+.--| ++.++.-|+++|
T Consensus 82 i~~lL~peD~~~~~~pD~ksimtYvs~l~~~~ 113 (121)
T 2d88_A 82 ISPIMTGKEMASVGEPDKLSMVMYLTQFYEMF 113 (121)
T ss_dssp CCCSSCHHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHhccCCCcHHHHHHHHHHHHHHc
Confidence 99999999999864445 455555554444
No 19
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=98.18 E-value=1.9e-06 Score=75.07 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=78.2
Q ss_pred CccCHHHHHHHhHhhhcCCcch----hhhcCCchhHhhhhhhhcCCCccccccc------c-cCCChHHHHHHHHHHHHH
Q 024596 12 YFVGRNELLTWINNRLQLHLSR----IEEAASGAVQCQMLDMTYPGVVPMHKVN------F-DAKTEYDMIQNYKVLQDV 80 (265)
Q Consensus 12 ~~~sR~eLL~WiN~~L~~~~~k----IEel~sGaayCQlmd~l~Pg~v~l~kVk------f-~a~~e~e~~~NfKiLQ~~ 80 (265)
|.--+.|+..||+..|+.++.. .|-|.+|++-|+|++.|.||+||++||. | .++..+.+..|...+-.+
T Consensus 45 yl~~~~e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~a 124 (193)
T 3i6x_A 45 YLCHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNA 124 (193)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHH
Confidence 3344569999999999988864 5778999999999999999999999983 3 346677888999998999
Q ss_pred HHhcCccc--cccccccccCC-CcchHHHHHHHHHHH
Q 024596 81 FNKLKIEK--HIEVNKLVKGR-PLDNLEFLQWLKRYC 114 (265)
Q Consensus 81 f~k~~I~k--~ipV~kLvkgk-~qdNlEFlQWfk~f~ 114 (265)
.+++||+. .+....|..|+ +.--+.-|..+-++.
T Consensus 125 c~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a 161 (193)
T 3i6x_A 125 MDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYL 161 (193)
T ss_dssp HHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999987 35567777775 222334455554443
No 20
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.17 E-value=1.7e-06 Score=76.67 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=74.0
Q ss_pred HHHHHHHhHhhhcCCc--chh----hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCccc
Q 024596 16 RNELLTWINNRLQLHL--SRI----EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEK 88 (265)
Q Consensus 16 R~eLL~WiN~~L~~~~--~kI----Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I~k 88 (265)
+..||.|+|..+.. | .+| .+..+|.|+|.|+|.+.|+.||+..+. +.+..+|.+..-++..+ +||++
T Consensus 135 ~~~LL~W~~~~~~~-~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~-----~~~~~~n~~~a~~~a~~~lGi~~ 208 (245)
T 1sh5_A 135 KEKLLLWSQRMVEG-YQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY-----RQTNLENLDQAFSVAERDLGVTR 208 (245)
T ss_dssp HHHHHHHHHHHTTT-STTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH-----HSCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcc-CCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc-----cCCHHHHHHHHHHHHHHhCCCCc
Confidence 45599999998864 2 133 457899999999999999999987764 23568898888887776 99999
Q ss_pred cccccccccCCC--cchHHHHHHHHHHHhhh
Q 024596 89 HIEVNKLVKGRP--LDNLEFLQWLKRYCDSV 117 (265)
Q Consensus 89 ~ipV~kLvkgk~--qdNlEFlQWfk~f~d~n 117 (265)
.++.+.++.++. .-++.|+..|+..|...
T Consensus 209 ~l~peDi~~~~pd~k~i~tyva~l~~~~~~~ 239 (245)
T 1sh5_A 209 LLDPEDVDVPQPDEKSIITYVSSLYDAMPRV 239 (245)
T ss_dssp CCCHHHHSSSSCCHHHHHHHHHHHHHHCC--
T ss_pred cCCHHHhccCCCcHHHHHHHHHHHHHHcCCC
Confidence 999999886644 66777887777666543
No 21
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.15 E-value=3.2e-06 Score=68.43 Aligned_cols=96 Identities=24% Similarity=0.401 Sum_probs=73.1
Q ss_pred CHHHHHHHhHhhhcCCc-------c-h--hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhc
Q 024596 15 GRNELLTWINNRLQLHL-------S-R--IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKL 84 (265)
Q Consensus 15 sR~eLL~WiN~~L~~~~-------~-k--IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~ 84 (265)
-+.|+..|||+++.++. + . .+.|.+|++-|+|++.+.||+|+ ||+-.++..+.+..|....-++.+++
T Consensus 7 ~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~--ki~~~~~~~f~~~eNI~~FL~a~~~~ 84 (121)
T 1wyr_A 7 GEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE--KFCLDPQTEADCINNINDFLKGCATL 84 (121)
T ss_dssp SHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS--CCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC--cCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 36799999999965443 1 1 38899999999999999999998 77656677899999999999999999
Q ss_pred CccccccccccccCCCcch-HHHHHHHHHH
Q 024596 85 KIEKHIEVNKLVKGRPLDN-LEFLQWLKRY 113 (265)
Q Consensus 85 ~I~k~ipV~kLvkgk~qdN-lEFlQWfk~f 113 (265)
|++ .+....|..||-... +.=|..+.++
T Consensus 85 g~~-~F~~~DL~e~kn~~~V~~cL~aL~~~ 113 (121)
T 1wyr_A 85 QVE-IFDPDDLYSGVNFSKVLSTLLAVNKA 113 (121)
T ss_dssp TCC-CCCHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred CCC-ccCHHHHHcCCCHHHHHHHHHHHHHH
Confidence 984 577777887753222 2334444444
No 22
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=98.15 E-value=5e-06 Score=69.08 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=76.8
Q ss_pred HHHHHHHhHhhhcCCcc--------hhhhcCCchhHhhhhhhhcC---CCcccccccccCCChHHHHHHHHHHHHHHHhc
Q 024596 16 RNELLTWINNRLQLHLS--------RIEEAASGAVQCQMLDMTYP---GVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKL 84 (265)
Q Consensus 16 R~eLL~WiN~~L~~~~~--------kIEel~sGaayCQlmd~l~P---g~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~ 84 (265)
..|+..||+..|+.++. =.|.|.+|++-|+|++.|.| |+|++ |++ .++..+.+..|...+-++.+++
T Consensus 11 e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~-kin-~~~~~f~~~eNI~~FL~ac~~~ 88 (144)
T 1ujo_A 11 EERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKV-PEN-PPSMVFKQMEQVAQFLKAAEDY 88 (144)
T ss_dssp HHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCC-CSS-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcce-eec-CCCchhHHHHHHHHHHHHHHHc
Confidence 47999999999998874 24669999999999999999 88873 554 4567889999999999999999
Q ss_pred Cccc--cccccccccCCCcch-HHHHHHHHHHHhh
Q 024596 85 KIEK--HIEVNKLVKGRPLDN-LEFLQWLKRYCDS 116 (265)
Q Consensus 85 ~I~k--~ipV~kLvkgk~qdN-lEFlQWfk~f~d~ 116 (265)
||+. .+....|..+|-... +.=|..+.++..+
T Consensus 89 Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~ 123 (144)
T 1ujo_A 89 GVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVT 123 (144)
T ss_dssp TCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9987 356778888863221 2346666666544
No 23
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.1e-05 Score=66.33 Aligned_cols=113 Identities=18% Similarity=0.297 Sum_probs=89.5
Q ss_pred CcccccccCCCccCHHHHHHHhHhhhcCCcch--h-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHH
Q 024596 2 ATNIGMMDSAYFVGRNELLTWINNRLQLHLSR--I-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQ 78 (265)
Q Consensus 2 ~~~~g~m~~~~~~sR~eLL~WiN~~L~~~~~k--I-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ 78 (265)
+.+.||-..-.---++||+.||+ .+.++..+ + -++++|...-.|+...||..|+|+.-. +++.-.-.+.||.+|.
T Consensus 3 ~~~~~~~~~l~~ee~~el~~WL~-~l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~-~~~S~~~K~~NW~~ln 80 (127)
T 2ee7_A 3 SGSSGMASSVDEEALHQLYLWVD-NIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYV-PANSLQQKLSNWGHLN 80 (127)
T ss_dssp CCCCSCCSSCCHHHHHHHHHHHH-HSCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCC-CCSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH-cCCCCCCCCchhhhccchhHHHHHHHHHCcCcccccccC-CCCcHHHHHHhHHHHH
Confidence 34677765544445889999999 58887752 3 569999999999999999999997632 4566677999999995
Q ss_pred -HHHHhcCcccc-ccccccccCCCcchHHHHHHHHHHHhh
Q 024596 79 -DVFNKLKIEKH-IEVNKLVKGRPLDNLEFLQWLKRYCDS 116 (265)
Q Consensus 79 -~~f~k~~I~k~-ipV~kLvkgk~qdNlEFlQWfk~f~d~ 116 (265)
.+|+|+|+... -.|+.++.|+...=-.+|.=++.+...
T Consensus 81 ~kvl~kl~~~l~~~~i~~i~~~~~Gaie~lL~~L~~~l~~ 120 (127)
T 2ee7_A 81 RKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEE 120 (127)
T ss_dssp HHTTGGGTCCCCHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 89999999664 458999999988777788887777654
No 24
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.11 E-value=3.1e-06 Score=71.40 Aligned_cols=86 Identities=16% Similarity=0.343 Sum_probs=71.2
Q ss_pred CccCHHHHHHHhHhhhcCCcch----hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcc
Q 024596 12 YFVGRNELLTWINNRLQLHLSR----IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIE 87 (265)
Q Consensus 12 ~~~sR~eLL~WiN~~L~~~~~k----IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~ 87 (265)
|...+.|+..||+..|+.++.. .+.|.+|++-|+|++.|.||+| +||+-.++..+.+..|...+-.+.+++||+
T Consensus 9 yl~~~~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i--~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~ 86 (159)
T 1p2x_A 9 YLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKL--IKIFYSNELQFRHSDNINKFLDFIHGIGLP 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSC--CCCCCCSSCCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCc--cccccccCCcchHHHHHHHHHHHHHHcCCC
Confidence 3334689999999999988864 4669999999999999999987 466544577888999999999999999998
Q ss_pred cc--ccccccccCC
Q 024596 88 KH--IEVNKLVKGR 99 (265)
Q Consensus 88 k~--ipV~kLvkgk 99 (265)
.. +....|..|+
T Consensus 87 ~~~lF~~~DL~e~k 100 (159)
T 1p2x_A 87 EIFHFELTDIYEGK 100 (159)
T ss_dssp GGGCCCHHHHSSCS
T ss_pred cccccCHHHHHhcC
Confidence 73 4677888886
No 25
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=98.09 E-value=6.2e-06 Score=67.37 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=66.0
Q ss_pred HHHHHHHhHhhhc--CC------cch-h-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-c
Q 024596 16 RNELLTWINNRLQ--LH------LSR-I-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-L 84 (265)
Q Consensus 16 R~eLL~WiN~~L~--~~------~~k-I-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~ 84 (265)
+.|+..||++++. .+ -.. + |-|.+|++-|+|++.+.||+|+ ||+-.+...+.+..|...+.++.++ .
T Consensus 14 ~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~--kI~~~~~~~f~~~eNI~~FL~a~~~~~ 91 (126)
T 2l3g_A 14 AEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVYPEPRSESECLSNIREFLRGCGASL 91 (126)
T ss_dssp HHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS--CCCSSCCSHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC--ccCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 6899999999844 21 112 3 8899999999999999999998 6765566789999999999999999 9
Q ss_pred CccccccccccccCC
Q 024596 85 KIEKHIEVNKLVKGR 99 (265)
Q Consensus 85 ~I~k~ipV~kLvkgk 99 (265)
|++ .+....|..||
T Consensus 92 g~~-lF~t~DL~e~k 105 (126)
T 2l3g_A 92 RLE-TFDANDLYQGQ 105 (126)
T ss_dssp CCC-CCCHHHHHTTS
T ss_pred CCC-ccCHHHHHhCC
Confidence 984 46777777775
No 26
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.07 E-value=9.2e-06 Score=72.74 Aligned_cols=97 Identities=16% Similarity=0.315 Sum_probs=74.2
Q ss_pred cCHHHHHHHhHhhhcCCcc--hh----hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCc
Q 024596 14 VGRNELLTWINNRLQLHLS--RI----EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKI 86 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~~~~~--kI----Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I 86 (265)
..+..||.|+|..+. .|+ .| .+.++|.|||.|++.+.|+.|++..+. +.+-.+|.+..-++..+ +||
T Consensus 140 ~~~~~LL~W~~~~~~-~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~-----~~~~~~n~~~a~~~A~~~lGi 213 (254)
T 1wku_A 140 SAKEGLLLWCQRKTA-PYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR-----KDDPIGNLNTAFEVAEKYLDI 213 (254)
T ss_dssp EHHHHHHHHHHHHHT-TCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCC-----TTCHHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHcc-CCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccC-----cCCHHHHHHHHHHHHHHHcCC
Confidence 356789999998774 221 12 257999999999999999998766553 45678898887777766 999
Q ss_pred cccccccccccCCCc---chHHHHHHHHHHHhh
Q 024596 87 EKHIEVNKLVKGRPL---DNLEFLQWLKRYCDS 116 (265)
Q Consensus 87 ~k~ipV~kLvkgk~q---dNlEFlQWfk~f~d~ 116 (265)
++.++.+.++.|... -++.|+..|+..|..
T Consensus 214 ~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~ 246 (254)
T 1wku_A 214 PKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246 (254)
T ss_dssp CCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 999999999988544 467777777776654
No 27
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.06 E-value=5e-06 Score=72.93 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=70.1
Q ss_pred CHHHHHHHhHhhhcCCcch----hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc-
Q 024596 15 GRNELLTWINNRLQLHLSR----IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH- 89 (265)
Q Consensus 15 sR~eLL~WiN~~L~~~~~k----IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~- 89 (265)
-+.|+..||+..|+.++.. .|.|.+|++-|+|++.|.||+| +||+-.++..+.+..|...+-++.+++||+..
T Consensus 56 ~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv--~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~~ 133 (203)
T 1p5s_A 56 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKL--IKIFYSNELQFRHSDNINKFLDFIHGIGLPEIF 133 (203)
T ss_dssp HHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSC--CCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCc--ccccCCCCCcchHHHHHHHHHHHHHHcCCCccc
Confidence 3589999999999888753 4669999999999999999988 56644566778899999999999999999874
Q ss_pred -ccccccccCC
Q 024596 90 -IEVNKLVKGR 99 (265)
Q Consensus 90 -ipV~kLvkgk 99 (265)
+....|..++
T Consensus 134 lF~t~DL~e~k 144 (203)
T 1p5s_A 134 HFELTDIYEGK 144 (203)
T ss_dssp CCCHHHHHSCS
T ss_pred ccCHHHHHhcC
Confidence 5777888886
No 28
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=9.3e-06 Score=68.24 Aligned_cols=103 Identities=17% Similarity=0.357 Sum_probs=77.4
Q ss_pred ccCCCccC-HHHHHHHhHhhhcCCcch--------hhhcCCchhHhhhhhhhcC---CCcccccccccCCChHHHHHHHH
Q 024596 8 MDSAYFVG-RNELLTWINNRLQLHLSR--------IEEAASGAVQCQMLDMTYP---GVVPMHKVNFDAKTEYDMIQNYK 75 (265)
Q Consensus 8 m~~~~~~s-R~eLL~WiN~~L~~~~~k--------IEel~sGaayCQlmd~l~P---g~v~l~kVkf~a~~e~e~~~NfK 75 (265)
+...|.-- ..|+..||+..|+.++.. .+.|.+|++-|+|++.|.| |+|+ ||+ .++..+.+..|..
T Consensus 10 ~~~ky~~~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~--kIn-~~~~~F~~~eNI~ 86 (155)
T 1wym_A 10 IEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK--KIQ-ASTMAFKQMEQIS 86 (155)
T ss_dssp CCCSCCHHHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC--CCC-CCCCHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC--ccc-CCCccccHHHHHH
Confidence 34444443 459999999999988753 3569999999999999999 9887 664 4568899999999
Q ss_pred HHHHHHHhcCcccc--ccccccccCCCcch-HHHHHHHHHH
Q 024596 76 VLQDVFNKLKIEKH--IEVNKLVKGRPLDN-LEFLQWLKRY 113 (265)
Q Consensus 76 iLQ~~f~k~~I~k~--ipV~kLvkgk~qdN-lEFlQWfk~f 113 (265)
.+-.+.+++||+.. +....|..|+-... +.=|..+.++
T Consensus 87 ~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~ 127 (155)
T 1wym_A 87 QFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGL 127 (155)
T ss_dssp HHHHHHHHHTCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccccCChHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999873 56778888863211 2234445544
No 29
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=98.00 E-value=1.2e-05 Score=66.29 Aligned_cols=88 Identities=20% Similarity=0.429 Sum_probs=70.6
Q ss_pred cCCCccC-HHHHHHHhHhhhcCCcc--hhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcC
Q 024596 9 DSAYFVG-RNELLTWINNRLQLHLS--RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLK 85 (265)
Q Consensus 9 ~~~~~~s-R~eLL~WiN~~L~~~~~--kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~ 85 (265)
...|.-- ..|+..|||..|+.++. =.+.|.+|++-|+|++.|.||+|+ ||+ .+...+.+..|...+-++.+++|
T Consensus 11 ~~ky~~~~~~e~~~WIe~~l~~~~~~~l~~~L~DGvvLCkL~N~l~P~~v~--ki~-~~~~~f~~~eNI~~Fl~a~~~~G 87 (136)
T 1wyp_A 11 AQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVK--KIN-ESTQNWHQLENIGNFIKAITKYG 87 (136)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCCCCCSCTTHHHHTSHHHHHHHHHHSTTSSS--CCC-CSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHHHhCCCCcHHHHHHHccHHhHHHHHHhhCCCCcc--ccc-ccccchHHHHHHHHHHHHHHHcC
Confidence 3344443 47999999999988763 346689999999999999999985 664 45677889999999999999999
Q ss_pred cccc--ccccccccCC
Q 024596 86 IEKH--IEVNKLVKGR 99 (265)
Q Consensus 86 I~k~--ipV~kLvkgk 99 (265)
++.. +....|..|+
T Consensus 88 v~~~~lF~~~DL~e~k 103 (136)
T 1wyp_A 88 VKPHDIFEANDLFENT 103 (136)
T ss_dssp CCGGGCCCHHHHHSCS
T ss_pred CCcccccCchHHhcCC
Confidence 9873 6677888776
No 30
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=97.99 E-value=3.6e-06 Score=74.78 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=69.9
Q ss_pred CHHHHHHHhHhhhcC----Ccchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHH-HhcCccc
Q 024596 15 GRNELLTWINNRLQL----HLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVF-NKLKIEK 88 (265)
Q Consensus 15 sR~eLL~WiN~~L~~----~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f-~k~~I~k 88 (265)
.+..||.|+|..+.. +++.. .+..+|.|||.|+|.+.|+.++...+. .+.+-.+|.+..-++- +++||++
T Consensus 136 ~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~----~~~~~~~n~~~a~~~A~~~lGi~~ 211 (246)
T 1dxx_A 136 SEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVV----SQQSATQRLEHAFNIARYQLGIEK 211 (246)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH----TCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhc----ccCCHHHHHHHHHHHHHHhCCCCc
Confidence 567899999988752 22222 457899999999999999999877653 1123356666544444 4899999
Q ss_pred cccccccccCCC--cchHHHHHHHHHHH
Q 024596 89 HIEVNKLVKGRP--LDNLEFLQWLKRYC 114 (265)
Q Consensus 89 ~ipV~kLvkgk~--qdNlEFlQWfk~f~ 114 (265)
.++.+.++.++. .-++.|+..++.+|
T Consensus 212 ~l~peDi~~~~pD~k~i~tyva~l~~~~ 239 (246)
T 1dxx_A 212 LLDPEDVDTTYPDKKSILMYITSLFQVL 239 (246)
T ss_dssp CCCHHHHSSSSCCHHHHHHHHHHHHTTS
T ss_pred cCCHHHhhcCCCcHHHHHHHHHHHHHHc
Confidence 999999999887 66777776665443
No 31
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=97.99 E-value=8.6e-06 Score=73.36 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=75.0
Q ss_pred CHHHHHHHhHhhhc-CCcchhh----hcCCchhHhhhhhhhcCCCcccc----cccccCCChHHHHHHHHHHHHHHHhcC
Q 024596 15 GRNELLTWINNRLQ-LHLSRIE----EAASGAVQCQMLDMTYPGVVPMH----KVNFDAKTEYDMIQNYKVLQDVFNKLK 85 (265)
Q Consensus 15 sR~eLL~WiN~~L~-~~~~kIE----el~sGaayCQlmd~l~Pg~v~l~----kVkf~a~~e~e~~~NfKiLQ~~f~k~~ 85 (265)
.+..||.|+|..|. ..+.+|. +..+|.|||-|++.+.|+.+|.. -+.|.+-.+.+..+|.+..-++-+++|
T Consensus 169 ~~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lG 248 (275)
T 1aoa_A 169 PEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLG 248 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcC
Confidence 35679999999874 2232243 46789999999999999977653 246677677788999998888888999
Q ss_pred ccccccccccccCCCcchHHHHHHH
Q 024596 86 IEKHIEVNKLVKGRPLDNLEFLQWL 110 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qdNlEFlQWf 110 (265)
|++.+..+.++.++..-++-|+.-+
T Consensus 249 i~~~l~peDi~~~~~k~i~tyva~L 273 (275)
T 1aoa_A 249 CRQFVTPADVVSGNPKLNLAFVANL 273 (275)
T ss_dssp CCCSCCHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcCCHHHcCCCChhHHHHHHHHH
Confidence 9999999999999876666666443
No 32
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.97 E-value=1.4e-05 Score=66.61 Aligned_cols=104 Identities=21% Similarity=0.339 Sum_probs=77.7
Q ss_pred ccCCCccCH-HHHHHHhHhhhcCCcc--hhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhc
Q 024596 8 MDSAYFVGR-NELLTWINNRLQLHLS--RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKL 84 (265)
Q Consensus 8 m~~~~~~sR-~eLL~WiN~~L~~~~~--kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~ 84 (265)
+...|.--+ .|+..||+..|+.++. =.+.|.+|++-|+|++.|.||+|+ |++ .++..+.+..|...+-.+.+++
T Consensus 10 ~~~ky~~~~~~e~~~WIe~~l~~~i~~~l~~~L~DGvvLCkL~N~l~P~~v~--kin-~~~~~f~~~eNI~~FL~a~~~~ 86 (146)
T 1wyn_A 10 LLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVP--KIN-RSMQNWHQLENLSNFIKAMVSY 86 (146)
T ss_dssp CCSCCCTTHHHHHHHHHHHHHCCCCCSCHHHHHHTTSHHHHHHHHHCTTSCS--CCC-CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc--ccc-cccccccHHHHHHHHHHHHHHc
Confidence 445555554 8999999999988763 346699999999999999999985 554 4567889999999999999999
Q ss_pred Ccccc--ccccccccCCCcch-HHHHHHHHHHH
Q 024596 85 KIEKH--IEVNKLVKGRPLDN-LEFLQWLKRYC 114 (265)
Q Consensus 85 ~I~k~--ipV~kLvkgk~qdN-lEFlQWfk~f~ 114 (265)
|++.. +....|..|+-... +.=|.-+.++.
T Consensus 87 Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a 119 (146)
T 1wyn_A 87 GMNPVDLFEANDLFESGNMTQVQVSLLALAGKA 119 (146)
T ss_dssp TCCSSSCCCHHHHHTCSCSHHHHHHHHHHHHHH
T ss_pred CCCcccccChhHHHhcCChHHHHHHHHHHHHHH
Confidence 99873 66778887763222 23344444443
No 33
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=97.96 E-value=2.1e-05 Score=64.35 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=79.2
Q ss_pred HHHHHHHhHhhhc---CCcchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-cc
Q 024596 16 RNELLTWINNRLQ---LHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-HI 90 (265)
Q Consensus 16 R~eLL~WiN~~L~---~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~i 90 (265)
++.+..|||..|. ..++.+ ++|++|...|++++.|-|+.+|+++++-.++.....++|..+.=+.+++.||.. .|
T Consensus 24 ~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~~gi~l~~I 103 (131)
T 2vzc_A 24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKP 103 (131)
T ss_dssp HHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 4558999999763 345555 589999999999999999999999998889999999999999999999999975 68
Q ss_pred cccccccCCCcchHHHH
Q 024596 91 EVNKLVKGRPLDNLEFL 107 (265)
Q Consensus 91 pV~kLvkgk~qdNlEFl 107 (265)
..+.++.|+.--.|-++
T Consensus 104 ~~~DIvdGn~kliLgLi 120 (131)
T 2vzc_A 104 RPEDIVNCDLKSTLRVL 120 (131)
T ss_dssp CHHHHHTTCHHHHHHHH
T ss_pred CHHHhhCCCHHhHHHHH
Confidence 88899999877677766
No 34
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=97.93 E-value=2.4e-05 Score=69.46 Aligned_cols=95 Identities=16% Similarity=0.376 Sum_probs=71.8
Q ss_pred cCHHHHHHHhHhhhc----CCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCccc
Q 024596 14 VGRNELLTWINNRLQ----LHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEK 88 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~----~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I~k 88 (265)
..+..||.|+|..+. .|++. +..+|.|||-|+|.+.|+.+| .|..-.+.+-.+|.+..-+.-.+ +||++
T Consensus 143 ~~~~~LL~W~~~~~~~~~v~nFs~--s~~dG~a~~aLi~~~~P~~i~----~~~~l~~~~~~~n~~~a~~~A~~~lGi~~ 216 (245)
T 2wa7_A 143 TPKQRLLGWIQNKIPYLPITNFNQ--NWQDGKALGALVDSCAPGLCP----DWESWDPQKPVDNAREAVQQADDWLGVPQ 216 (245)
T ss_dssp CHHHHHHHHHHHHSTTSCCCCSSG--GGTTSHHHHHHHHHHSTTSST----TGGGSCTTCHHHHHHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHHHhCCCCCCCCCcc--cchhhHHHHHHHHHHCccccc----cccccCcccHHHHHHHHHHHHHHhCCCCc
Confidence 347899999999875 24443 689999999999999999873 23333455678888887777776 99999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHh
Q 024596 89 HIEVNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 89 ~ipV~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
.++.+.++.|+. |-.-.+-.+-.||.
T Consensus 217 ~l~peDi~~~~~-d~ksi~tyvs~~~~ 242 (245)
T 2wa7_A 217 VITPEEIIHPDV-DEHSVMTYLSQFPK 242 (245)
T ss_dssp SSCHHHHTCTTC-CHHHHHHHHTHHHH
T ss_pred cCCHHHhccCCC-cHHHHHHHHHHHhc
Confidence 999999999765 55555555555554
No 35
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=97.89 E-value=1.8e-05 Score=76.88 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=76.9
Q ss_pred ccCHHHHHHHhHhhhc-----CCcchhh--hcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcC
Q 024596 13 FVGRNELLTWINNRLQ-----LHLSRIE--EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLK 85 (265)
Q Consensus 13 ~~sR~eLL~WiN~~L~-----~~~~kIE--el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~ 85 (265)
.++...||.|+|..+. .+++... +..+|.|+|-|+|.+.|+.|+++.+.-. .++.+..+|.+..-++.+++|
T Consensus 396 ~~~~~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~l~~~-~s~~~~~~N~~~a~~~a~~lG 474 (506)
T 1pxy_A 396 EMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKG-ETDDEKRLNATYIVSVARKLG 474 (506)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCS-CSHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhhCCCeeehhhcccC-CCchhHHHHHHHHHHHHHHcC
Confidence 3578899999999885 3555554 7889999999999999999988776532 356688999998766668999
Q ss_pred ccccccccccccCCCcchHHHHHHHHHH
Q 024596 86 IEKHIEVNKLVKGRPLDNLEFLQWLKRY 113 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qdNlEFlQWfk~f 113 (265)
|++.++.+.++.++-.-.+-++.-|+.+
T Consensus 475 i~~~l~peDi~~~d~ksi~tyv~~l~~~ 502 (506)
T 1pxy_A 475 CSVFLLPEDIVEVNQKMILILTASIMYW 502 (506)
T ss_dssp CCCCCCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHccCCChhHHHHHHHHHHHH
Confidence 9999999999988544445544444433
No 36
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.85 E-value=2.4e-05 Score=76.33 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=74.0
Q ss_pred ccCHHHHHHHhHhhhc-----CCcchhh--hcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcC
Q 024596 13 FVGRNELLTWINNRLQ-----LHLSRIE--EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLK 85 (265)
Q Consensus 13 ~~sR~eLL~WiN~~L~-----~~~~kIE--el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~ 85 (265)
-++.++||.|+|..+. .+++... ...+|-|+|-|+|.+.|+.|+...|.- ..++.+-.+|.+..-++-+++|
T Consensus 407 ~~~~~~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~~P~~i~~~~l~~-~~~~~~~~~n~~~af~~A~~lG 485 (513)
T 1rt8_A 407 TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTD-GSTEELAIQNARLAISIARKLG 485 (513)
T ss_dssp CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCC-CCSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHHHHhCCCcCCHHhhcc-ccChhhHHHHHHHHHHHHHHcC
Confidence 3567889999999886 3455555 588999999999999999998777542 2356788999998877779999
Q ss_pred ccccccccccccCCCcchHHH
Q 024596 86 IEKHIEVNKLVKGRPLDNLEF 106 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qdNlEF 106 (265)
|++.++.+.++.++..-.+.+
T Consensus 486 i~~~l~peDi~~~~pksi~ty 506 (513)
T 1rt8_A 486 AVIFILPEDIVAVRPRLVLHF 506 (513)
T ss_dssp CCCCCCHHHHHTTCHHHHHHH
T ss_pred CCccCCHHHhcCCCcccHHHH
Confidence 999999999999985433333
No 37
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=69.16 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=76.9
Q ss_pred CHHHHHHHhHhhhcCCcch----hhhcCCchhHhhhhhhhcCCCccccccc------cc-CCChHHHHHHHHHHHHHHHh
Q 024596 15 GRNELLTWINNRLQLHLSR----IEEAASGAVQCQMLDMTYPGVVPMHKVN------FD-AKTEYDMIQNYKVLQDVFNK 83 (265)
Q Consensus 15 sR~eLL~WiN~~L~~~~~k----IEel~sGaayCQlmd~l~Pg~v~l~kVk------f~-a~~e~e~~~NfKiLQ~~f~k 83 (265)
-+.|+..||++.|+.++.. .+-|.+|++-|+|++.|.||+||++||. ++ ++..+-+..|...+-.+.++
T Consensus 26 ~~~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~ 105 (190)
T 2rr8_A 26 HLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDE 105 (190)
T ss_dssp HHHHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHH
Confidence 3589999999999888753 3569999999999999999999998873 22 34567778899999999999
Q ss_pred cCccc--cccccccccCCCcc-hHHHHHHHHHHHh
Q 024596 84 LKIEK--HIEVNKLVKGRPLD-NLEFLQWLKRYCD 115 (265)
Q Consensus 84 ~~I~k--~ipV~kLvkgk~qd-NlEFlQWfk~f~d 115 (265)
+||+. .+....|..|+-.. =+.=|..+.++..
T Consensus 106 ~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~ 140 (190)
T 2rr8_A 106 IGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLF 140 (190)
T ss_dssp TTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99977 34667788776322 2344556666543
No 38
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=97.76 E-value=2e-05 Score=76.57 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=73.9
Q ss_pred CHHHHHHHhHhhhc-----CCcchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc
Q 024596 15 GRNELLTWINNRLQ-----LHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK 88 (265)
Q Consensus 15 sR~eLL~WiN~~L~-----~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k 88 (265)
.+..||.|+|..|. .+++.. .++.+|.+||-|++.+.|+.+++..+ .+.+..+|.+..-++-+++||++
T Consensus 153 ~~~~LL~W~n~~l~~~g~~~~v~nFs~s~~DG~a~~~Ll~~~~P~~i~~~~l-----~~~~~~~n~~~a~~~a~~lGi~~ 227 (506)
T 1pxy_A 153 PEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATL-----DAKDPLERAELVLSHAERMNCKR 227 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGG-----GCCSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhcCCCccCccccccccchHHHHHHHHHhCccccccccC-----CcCCHHHHHHHHHHHHHHcCCCC
Confidence 56789999998774 122222 46899999999999999998876544 34577899998888888999999
Q ss_pred cccccccccCCCcchHHHHHHHHHHH
Q 024596 89 HIEVNKLVKGRPLDNLEFLQWLKRYC 114 (265)
Q Consensus 89 ~ipV~kLvkgk~qdNlEFlQWfk~f~ 114 (265)
.+..+.++.|+..-++-|+.-++..|
T Consensus 228 ~l~peDi~~~~~k~v~tyva~l~~~~ 253 (506)
T 1pxy_A 228 YLTAEEIVEGSSTLNLAFVAQIFHER 253 (506)
T ss_dssp CCCHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHhcCChhHHHHHHHHHhhhc
Confidence 99999999998766666665544443
No 39
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=97.69 E-value=6.5e-05 Score=67.61 Aligned_cols=98 Identities=20% Similarity=0.369 Sum_probs=77.3
Q ss_pred HHHHHHHhHhhhcCC------------cc-hhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHH
Q 024596 16 RNELLTWINNRLQLH------------LS-RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFN 82 (265)
Q Consensus 16 R~eLL~WiN~~L~~~------------~~-kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~ 82 (265)
.+++..|||..|..+ +. =.++|.+|..-|+|++.+.|++|+.++++-.+......++|....-++.+
T Consensus 26 ~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k 105 (275)
T 1aoa_A 26 KYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSAS 105 (275)
T ss_dssp HHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 589999999998642 12 23779999999999999999999988887555567889999999999999
Q ss_pred hcCccc-cccccccccCCCcchHHHH-HHHHHH
Q 024596 83 KLKIEK-HIEVNKLVKGRPLDNLEFL-QWLKRY 113 (265)
Q Consensus 83 k~~I~k-~ipV~kLvkgk~qdNlEFl-QWfk~f 113 (265)
..|+.. .|..+.|+.|+..--|-++ |-++.|
T Consensus 106 ~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~ 138 (275)
T 1aoa_A 106 AIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIG 138 (275)
T ss_dssp HTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcccCCCHHHHHcCcHHHHHHHHHHHHHHh
Confidence 999976 4777889999765555544 224444
No 40
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=97.65 E-value=3.6e-05 Score=70.96 Aligned_cols=94 Identities=15% Similarity=0.282 Sum_probs=68.5
Q ss_pred HHHHHHHhHhhhcC----Ccchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHH-HhcCcccc
Q 024596 16 RNELLTWINNRLQL----HLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVF-NKLKIEKH 89 (265)
Q Consensus 16 R~eLL~WiN~~L~~----~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f-~k~~I~k~ 89 (265)
+..||.|+|..+.. +++.+ .+..+|.|||-|+|.+.|+.|++..+. +.+-.+|.+..-+.. +++||++.
T Consensus 191 k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~-----~~~~~~N~~~Af~~Ae~~LGi~~l 265 (296)
T 3f7p_A 191 KEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVY-----RQTNLENLDQAFSVAERDLGVTRL 265 (296)
T ss_dssp HHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHT-----TSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcC-----cccHHHHHHHHHHHHHHhCCCCcc
Confidence 45599999998852 22221 678999999999999999998877664 224577988887777 58999999
Q ss_pred ccccccccCCCcchHHHHHHHHHHHh
Q 024596 90 IEVNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 90 ipV~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
++.+.++.++. |-.-.+-.+..||.
T Consensus 266 l~pEDi~~~~p-Deksimtyvs~ly~ 290 (296)
T 3f7p_A 266 LDPEDVDVPQP-DEKSIITYVSSLYD 290 (296)
T ss_dssp CCHHHHSSSSC-CHHHHHHHHHHHHH
T ss_pred CCHHHhcCCCC-cHHHHHHHHHHHHH
Confidence 99999876654 33344444444444
No 41
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.64 E-value=3.9e-05 Score=74.80 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=72.8
Q ss_pred HHHHHHHhHhhhcC-----Ccchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc
Q 024596 16 RNELLTWINNRLQL-----HLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH 89 (265)
Q Consensus 16 R~eLL~WiN~~L~~-----~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k~ 89 (265)
+..||.|+|..|.. +++.. .+..+|.+||-|++.+.|+.+++.. -.+.+..+|.+..-++.+++||++.
T Consensus 163 ~~~LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~-----l~~~~~~~n~~~a~~~a~~lgi~~~ 237 (513)
T 1rt8_A 163 EKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAP-----LQTTDVLQRAEQVLQNAEKLDCRKY 237 (513)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGG-----GGCCCHHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCcCcccchhhhhccHHHHHHHHHHCccccccCC-----CCccCHHHHHHHHHHHHHHcCCCcc
Confidence 67899999987742 23322 3578899999999999999887543 3455678999999899999999999
Q ss_pred ccccccccCCCcchHHHHHHHHHH
Q 024596 90 IEVNKLVKGRPLDNLEFLQWLKRY 113 (265)
Q Consensus 90 ipV~kLvkgk~qdNlEFlQWfk~f 113 (265)
++.+.++.|+..-++-|+.=++..
T Consensus 238 l~peDi~~~~~k~il~yva~l~~~ 261 (513)
T 1rt8_A 238 LTPTAMVAGNPKLNLAFVAHLFNT 261 (513)
T ss_dssp CCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHhcCCCHHHHHHHHHHHHhh
Confidence 999999999876677766444333
No 42
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.64 E-value=6e-05 Score=68.62 Aligned_cols=95 Identities=23% Similarity=0.431 Sum_probs=72.3
Q ss_pred cCHHHHHHHhHhhhcC----CcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCccc
Q 024596 14 VGRNELLTWINNRLQL----HLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEK 88 (265)
Q Consensus 14 ~sR~eLL~WiN~~L~~----~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I~k 88 (265)
..+..||.|+|..+.- |++. +..+|-|||-|+|.+.|+.|| .|..-.+.+-.+|.+..-+.-++ +||++
T Consensus 170 s~k~~LL~W~n~~~~~~~I~nFs~--sw~DG~af~aLi~~~~P~li~----d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ 243 (272)
T 3hoc_A 170 TPKQRLLGWIQNKLPQLPITNFSR--DWQSGRALGALVDSCAPGLCP----DWDSWDASKPVTNAREAMQQADDWLGIPQ 243 (272)
T ss_dssp CHHHHHHHHHHHHCTTSCCCCSSG--GGTTSHHHHHHHHHHSTTSST----TGGGSCTTCHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHhhCCCCCCCChhh--cccchHHHHHHHHHhCccccc----chhhcCccCHHHHHHHHHHHHHHhCCCCc
Confidence 3578899999987642 4543 678999999999999999873 23333345678898888887777 99999
Q ss_pred cccccccccCCCcchHHHHHHHHHHHh
Q 024596 89 HIEVNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 89 ~ipV~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
.++.+.++.++ -|-.-.+-.+-.||.
T Consensus 244 ll~peDiv~~~-pD~ksimtYvs~~~~ 269 (272)
T 3hoc_A 244 VITPEEIVDPN-VDKHSVMTYLSQFPK 269 (272)
T ss_dssp SSCHHHHTCTT-CCHHHHHHHHTTCC-
T ss_pred cCCHHHhccCC-CChHHHHHHHHHhhc
Confidence 99999999975 466666666655554
No 43
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.63 E-value=0.00012 Score=68.43 Aligned_cols=114 Identities=17% Similarity=0.325 Sum_probs=80.8
Q ss_pred CccCHHHHHHHhHhhhcC----CcchhhhcCCchhHhhhhhhhcCCCcc-cccccccCCChHHHHHHHHHHHHHHH-hcC
Q 024596 12 YFVGRNELLTWINNRLQL----HLSRIEEAASGAVQCQMLDMTYPGVVP-MHKVNFDAKTEYDMIQNYKVLQDVFN-KLK 85 (265)
Q Consensus 12 ~~~sR~eLL~WiN~~L~~----~~~kIEel~sGaayCQlmd~l~Pg~v~-l~kVkf~a~~e~e~~~NfKiLQ~~f~-k~~ 85 (265)
....+..||.|+|..+.- |++ .+..+|-|||-|+|.+.|+.++ +.. -.+.+-++|.+..-+.-. ++|
T Consensus 138 ~~~~k~~LL~W~~~~~~~~~v~nF~--~sw~DG~af~aLi~~~~P~~~~d~~~-----l~~~~~~~n~~~Af~~Ae~~lG 210 (347)
T 4b7l_A 138 KQTPKQRLLGWIQNKIPYLPITNFN--QNWQDGKALGALVDSCAPGLCPDWES-----WDPQKPVDNAREAMQQADDWLG 210 (347)
T ss_dssp CCCHHHHHHHHHHHHCTTSCCCCSS--GGGTTSHHHHHHHHHHSTTSSTTGGG-----SCTTCHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHhhCCCcccCCCC--CCccchHHHHHHHHHhCCccccchhh-----cCcCCHHHHHHHHHHHHHHhcC
Confidence 344678899999997732 343 4788999999999999999874 433 334556788887555444 599
Q ss_pred ccccccccccccCCCcchHHHHHHHHHHHhhhCC-CC-CCCCCChhhhhc
Q 024596 86 IEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNG-GI-MNENYNPVERRC 133 (265)
Q Consensus 86 I~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n~~-~~-~~~~Yd~~~rR~ 133 (265)
|++.++.+.++.++. |-.-.+-.+-.||.+... +. ....+||...|+
T Consensus 211 ip~ll~peDi~~~~p-DeksimtYvs~~~~~~~~~~~~l~~k~~pskv~a 259 (347)
T 4b7l_A 211 VPQVITPEEIIHPDV-DEHSVMTYLSQFPKAKLKPGAPLKPKLNPKKARA 259 (347)
T ss_dssp CCCSSCHHHHTCTTC-CHHHHHHHHTTGGGCCCCTTCCCCCSCCGGGCEE
T ss_pred CCcccCHHHcCCCCC-ChhHHHHHHHHHhhhccCccccccccccccceeE
Confidence 999999999998875 666666666666655322 11 134688877775
No 44
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=97.40 E-value=0.00022 Score=63.31 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=75.5
Q ss_pred CHHHHHHHhHhhhcC---Ccc-hhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-c
Q 024596 15 GRNELLTWINNRLQL---HLS-RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-H 89 (265)
Q Consensus 15 sR~eLL~WiN~~L~~---~~~-kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~ 89 (265)
-++.+..|||..|.- .+. =.++|.+|...|+|++.|-|+.++ ++++-.++.....++|....-++.+..|+.. .
T Consensus 21 q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~-~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~lv~ 99 (245)
T 2wa7_A 21 QQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRPTFRQMQLENVSVALEFLDRESIKLVS 99 (245)
T ss_dssp HHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCc-hhcCCCCCcHHHHHHHHHHHHHHHHHcCCcccC
Confidence 357899999999842 121 246899999999999999999875 6777777888899999999999999999976 4
Q ss_pred ccccccccCCCcchHHHH
Q 024596 90 IEVNKLVKGRPLDNLEFL 107 (265)
Q Consensus 90 ipV~kLvkgk~qdNlEFl 107 (265)
|..+.++.|+..--|-++
T Consensus 100 I~~~DIvdG~~kliLgLl 117 (245)
T 2wa7_A 100 IDSKAIVDGNLKLILGLV 117 (245)
T ss_dssp CCHHHHHTTCHHHHHHHH
T ss_pred CCHHHhhCCCHHHHHHHH
Confidence 778899999876667665
No 45
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=97.24 E-value=0.00037 Score=62.31 Aligned_cols=95 Identities=18% Similarity=0.318 Sum_probs=73.9
Q ss_pred HHHHHHHhHhhhcC---Ccch-hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-cc
Q 024596 16 RNELLTWINNRLQL---HLSR-IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-HI 90 (265)
Q Consensus 16 R~eLL~WiN~~L~~---~~~k-IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~i 90 (265)
.+++..|||..|.- .+.. .++|.+|...|+|++.|-|+.|+- ++ .++.....++|....-++.++.||.. .|
T Consensus 29 ~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k--~~-~~~~~~~~~eNi~~aL~~~k~~gv~lv~I 105 (254)
T 1wku_A 29 RKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPR--PD-KGKMRFHKIANVNKALDFIASKGVKLVSI 105 (254)
T ss_dssp HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCC--CC-SCCSHHHHHHHHHHHHHHHHTTTCCCCSC
T ss_pred HHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCC--CC-CCccHHHHHHhHHHHHHHHHHcCCCccCC
Confidence 57899999999853 2322 277999999999999999998763 33 45678899999999999999999976 47
Q ss_pred cccccccCCCcchHHHH-HHHHHH
Q 024596 91 EVNKLVKGRPLDNLEFL-QWLKRY 113 (265)
Q Consensus 91 pV~kLvkgk~qdNlEFl-QWfk~f 113 (265)
..+.++.|+..--|-++ |-+++|
T Consensus 106 ~~~DIvdG~~kliLgLlW~li~~~ 129 (254)
T 1wku_A 106 GAEEIVDGNLKMTLGMIWTIILRF 129 (254)
T ss_dssp CHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhccchHHHHHHHHHHHHHH
Confidence 78889999776666655 224444
No 46
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=97.08 E-value=0.0014 Score=57.73 Aligned_cols=95 Identities=17% Similarity=0.374 Sum_probs=74.6
Q ss_pred HHHHHHHhHhhhcC--------Ccch-hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCc
Q 024596 16 RNELLTWINNRLQL--------HLSR-IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKI 86 (265)
Q Consensus 16 R~eLL~WiN~~L~~--------~~~k-IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I 86 (265)
.+.+..|||..|.. .+.. .++|++|..-|+|++.|-|+.+|- ..++.....++|....-+++++.|+
T Consensus 14 ~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~----~~~~~~~~~~eNv~~aL~~~k~~g~ 89 (245)
T 1sh5_A 14 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR----EKGRMRFHKLQNVQIALDYLRHRQV 89 (245)
T ss_dssp HHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC----CCCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC----CCCcchHHHHHhHHHHHHHHHHcCC
Confidence 56789999999854 2333 467999999999999999999882 3567788999999999999999999
Q ss_pred cc-cccccccccCCCcchHHHH-HHHHHHH
Q 024596 87 EK-HIEVNKLVKGRPLDNLEFL-QWLKRYC 114 (265)
Q Consensus 87 ~k-~ipV~kLvkgk~qdNlEFl-QWfk~f~ 114 (265)
.. .|..+.++.|+..--|-++ |-+++|-
T Consensus 90 ~l~~I~~~DIvdg~~k~iLgLlw~li~~~~ 119 (245)
T 1sh5_A 90 KLVNIRNDDIADGNPKLTLGLIWTIILHFQ 119 (245)
T ss_dssp CCCSCCHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cccCCChHhhhcccHHHHHHHHHHHHHhhc
Confidence 75 5777789999876666665 3344443
No 47
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=97.07 E-value=0.0011 Score=60.13 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=78.5
Q ss_pred HHHHHHHhHhhhc---CCcchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-cc
Q 024596 16 RNELLTWINNRLQ---LHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-HI 90 (265)
Q Consensus 16 R~eLL~WiN~~L~---~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~i 90 (265)
++.+..|||..|. ..++.+ ++|++|...|+|++.|-|+.+ .++++..++...+.++|..+.-++++..||.. .|
T Consensus 49 kktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l-~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~lvnI 127 (272)
T 3hoc_A 49 QNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKM-HRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSI 127 (272)
T ss_dssp HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCC-SSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCcc-ccccCCCCccHHHHHHHHHHHHHHHHHcCCccccc
Confidence 3568999999873 233333 679999999999999999987 57888788888899999999999999999976 57
Q ss_pred cccccccCCCcchHHHHHHHHHHHh
Q 024596 91 EVNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 91 pV~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
-.+.++.|+..--|-++==+-.+|.
T Consensus 128 ~~~DIvdGn~kliLgLlW~Li~~~~ 152 (272)
T 3hoc_A 128 DSKAIVDGNLKLILGLIWTLILHYS 152 (272)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhhcCCHHHHHHHHHHHHHHHh
Confidence 8889999987666665533444443
No 48
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=97.02 E-value=0.00044 Score=69.90 Aligned_cols=96 Identities=18% Similarity=0.332 Sum_probs=72.8
Q ss_pred CHHHHHHHhHhhhc-------CCcchhhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCc
Q 024596 15 GRNELLTWINNRLQ-------LHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKI 86 (265)
Q Consensus 15 sR~eLL~WiN~~L~-------~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k-~~I 86 (265)
.+..||.|+|..+. .|++. ...+|.|||-|++.+.|+.|++..+.- .+-.+|.+..-++..+ +||
T Consensus 122 ~~~~ll~W~~~~~~~~~~~~v~nf~~--s~~dg~~~~~li~~~~p~~~~~~~~~~-----~~~~~n~~~a~~~a~~~lg~ 194 (863)
T 1sjj_A 122 AKEGLLLWYQRKTAPYKNVNIQNFHI--SWKDGLGFCALIHRHRPELIDYGKLRK-----DDPLTNLNTAFDVAEKYLDI 194 (863)
T ss_dssp STTTTHHHHHHHHTTSTTCCCCSSSG--GGTTSHHHHHHHHTTCCSSSCSGGGGS-----CCCGGGCTHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhccCCCCCCCCCCcc--ccccHHHHHHHHHHhCCCCcChhhCCC-----CCHHHHHHHHHHHHHHhCCC
Confidence 46779999998773 13332 778999999999999999999887753 2346777776666665 999
Q ss_pred cccccccccccCCCcchHHHHHHHHHHHhhh
Q 024596 87 EKHIEVNKLVKGRPLDNLEFLQWLKRYCDSV 117 (265)
Q Consensus 87 ~k~ipV~kLvkgk~qdNlEFlQWfk~f~d~n 117 (265)
++.++.+.++.+.-.|-.-.+-.+..||...
T Consensus 195 ~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~~ 225 (863)
T 1sjj_A 195 PKMLDAEDIVGTARPDEKAIMTYVSSFYHAF 225 (863)
T ss_dssp CCSCCHHHHTTCSSCCHHHHHHHHHHTTTTT
T ss_pred CCccCHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999886566666666666666543
No 49
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=96.92 E-value=0.0017 Score=59.73 Aligned_cols=94 Identities=17% Similarity=0.402 Sum_probs=73.3
Q ss_pred HHHHHHHhHhhhcC---Ccch-hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-cc
Q 024596 16 RNELLTWINNRLQL---HLSR-IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-HI 90 (265)
Q Consensus 16 R~eLL~WiN~~L~~---~~~k-IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~i 90 (265)
++.+..|||..|.- .+.. .++|++|...|+|++.|-|+.+|.. .++.....++|..+.-++++..||.. .|
T Consensus 75 kktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~----~~~~r~~kleNvn~aL~~lk~~gv~lv~I 150 (296)
T 3f7p_A 75 KKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE----KGRMRFHKLQNVQIALDYLRHRQVKLVNI 150 (296)
T ss_dssp HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC----CCSSHHHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCccccc----CCcChhhhhhhHHHHHHHHHHhCccccCC
Confidence 46789999999842 2333 3679999999999999999998863 46778899999999999999999975 57
Q ss_pred cccccccCCCcchHHHH-HHHHHH
Q 024596 91 EVNKLVKGRPLDNLEFL-QWLKRY 113 (265)
Q Consensus 91 pV~kLvkgk~qdNlEFl-QWfk~f 113 (265)
..+.++.|+..--|-++ |-+.+|
T Consensus 151 ~~~DIvdGn~kliLgLlW~Li~~~ 174 (296)
T 3f7p_A 151 RNDDIADGNPKLTLGLIWTIILHF 174 (296)
T ss_dssp CHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhhhhccchHHHHHHHHHhhccc
Confidence 77899999766556554 234444
No 50
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=96.86 E-value=0.0019 Score=57.22 Aligned_cols=89 Identities=15% Similarity=0.282 Sum_probs=71.0
Q ss_pred CHHHHHHHhHhhhcC----Ccch-hhhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-
Q 024596 15 GRNELLTWINNRLQL----HLSR-IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK- 88 (265)
Q Consensus 15 sR~eLL~WiN~~L~~----~~~k-IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k- 88 (265)
-.+.+..|||..|.. .+.. .++|.+|...|+|++.|-|+.+|- ..++.....++|....-++.++.|+..
T Consensus 17 q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~----~~~~~~~~~~eNv~~aL~~~k~~g~~l~ 92 (246)
T 1dxx_A 17 QKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK----EKGSTRVHALNNVNKALRVLQNNNVDLV 92 (246)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC----CCCSSHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC----CCCccHHHHHHHHHHHHHHHHHcCCccc
Confidence 357889999999852 2332 468999999999999999988773 246778889999999999999999975
Q ss_pred cccccccccCCCcchHHHH
Q 024596 89 HIEVNKLVKGRPLDNLEFL 107 (265)
Q Consensus 89 ~ipV~kLvkgk~qdNlEFl 107 (265)
.|..+.++.|+..--|-++
T Consensus 93 ~I~~~DIvdg~~~liL~Ll 111 (246)
T 1dxx_A 93 NIGSTDIVDGNHKLTLGLI 111 (246)
T ss_dssp TCCHHHHHTTCHHHHHHHH
T ss_pred cCCHHHhhcccHHHHHHHH
Confidence 5778889999765555554
No 51
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=96.31 E-value=0.004 Score=62.89 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=64.6
Q ss_pred HHHHHHHhHhhhcC---Ccchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-cc
Q 024596 16 RNELLTWINNRLQL---HLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-HI 90 (265)
Q Consensus 16 R~eLL~WiN~~L~~---~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~i 90 (265)
++.+..|||..|.- .+..+ ++|++|...|+|++.|-|+.||- ++ .++.....++|..+.-++.+..||.. .|
T Consensus 10 ~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~--~~-~~~~~~~~~eN~~~~l~~~~~~g~~~~~i 86 (863)
T 1sjj_A 10 RKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAK--PE-RGKMRVHKISNVNKALDFIASKGVKLVSI 86 (863)
T ss_dssp HHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCC--SC-CCSSHHHHHHHHHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeC--CC-CCccHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 46789999999832 23332 67899999999999999998874 32 35788999999999999999999976 46
Q ss_pred cccccccCC
Q 024596 91 EVNKLVKGR 99 (265)
Q Consensus 91 pV~kLvkgk 99 (265)
-.+.++.|+
T Consensus 87 ~~~di~~g~ 95 (863)
T 1sjj_A 87 GAEEIVDGN 95 (863)
T ss_dssp CSHHHHTTC
T ss_pred ChHHhhcCC
Confidence 777777775
No 52
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=96.25 E-value=0.009 Score=58.56 Aligned_cols=84 Identities=17% Similarity=0.331 Sum_probs=64.4
Q ss_pred HHHHHHHhHhhhcCCcc------------hhhhcCCchhHhhhhhhhcCCCcccccccccCCC-hHHHHHHHHHHHHHH-
Q 024596 16 RNELLTWINNRLQLHLS------------RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKT-EYDMIQNYKVLQDVF- 81 (265)
Q Consensus 16 R~eLL~WiN~~L~~~~~------------kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~-e~e~~~NfKiLQ~~f- 81 (265)
-+|--.||++...+... =.+-|.+|++-|+|++.|.||+||+++|+-.++. ..-+..|..-+-.+-
T Consensus 7 w~~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~ 86 (587)
T 3ky9_A 7 WRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCC 86 (587)
T ss_dssp HHHHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHH
Confidence 35788999986544432 2366799999999999999999999999855554 577888888877777
Q ss_pred HhcCccc--cccccccccCC
Q 024596 82 NKLKIEK--HIEVNKLVKGR 99 (265)
Q Consensus 82 ~k~~I~k--~ipV~kLvkgk 99 (265)
+++||+. .+....|..++
T Consensus 87 ~~~g~~~~~~f~~~Dl~~~~ 106 (587)
T 3ky9_A 87 EKFGLKRSELFEAFDLFDVQ 106 (587)
T ss_dssp HTTCCCTTSSCCHHHHHTCS
T ss_pred HHcCCCHHHcCCchhhhccC
Confidence 8999986 35566666554
No 53
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=96.02 E-value=0.019 Score=53.55 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=76.2
Q ss_pred HHHHHHhHhhhc---CCcchh-hhcCCchhHhhhhhhhcCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccc-ccc
Q 024596 17 NELLTWINNRLQ---LHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEK-HIE 91 (265)
Q Consensus 17 ~eLL~WiN~~L~---~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~NfKiLQ~~f~k~~I~k-~ip 91 (265)
+-.-.|||..|. ..++.+ ++|++|...|+|++.|-++.++ +++.-.++.....++|..+.=+.+++.||.. .|.
T Consensus 20 ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~-~~~~~~p~~r~~k~eNv~~al~~~~~~g~~lv~i~ 98 (347)
T 4b7l_A 20 NTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRPTFRQMQLENVSVALEFLDRESIKLVSID 98 (347)
T ss_dssp HHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccC-hhhcCCcccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 447889999874 344444 5799999999999999988876 3455567888889999999999999999986 688
Q ss_pred ccccccCCCcchHHHHHHHHHHHh
Q 024596 92 VNKLVKGRPLDNLEFLQWLKRYCD 115 (265)
Q Consensus 92 V~kLvkgk~qdNlEFlQWfk~f~d 115 (265)
.+.++.|+..--|-++==+-.+|.
T Consensus 99 ~~DIvdGn~~liLgLiW~li~~~~ 122 (347)
T 4b7l_A 99 SKAIVDGNLKLILGLVWTLILHYS 122 (347)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCHhhHHHHHHHHHHHHh
Confidence 899999987666665533444444
No 54
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=95.18 E-value=0.03 Score=47.28 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=39.8
Q ss_pred ccccCCCccCHHHHHHHhHhhh-cCCcchhhhcCCchhHhhhhhhhcCCCcc
Q 024596 6 GMMDSAYFVGRNELLTWINNRL-QLHLSRIEEAASGAVQCQMLDMTYPGVVP 56 (265)
Q Consensus 6 g~m~~~~~~sR~eLL~WiN~~L-~~~~~kIEel~sGaayCQlmd~l~Pg~v~ 56 (265)
|-|+..-.--..-|+.|||..- ...++.+++|++|++.-+++..|-|...+
T Consensus 1 ~~~~~~~~~~~~aLl~W~~tf~~~~~~~~~~dL~DG~~L~~iL~~IDp~~F~ 52 (164)
T 1wix_A 1 GSSGSSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFS 52 (164)
T ss_dssp CCCCCCSCHHHHHHHHHHTTCCCSSCCCSHHHHTTSHHHHHHHHHHCTTTSC
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCCcCcHHHhccHHHHHHHHHHhCccccC
Confidence 4455544445678999999642 34688999999999999999999998654
No 55
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.33 E-value=3.3 Score=31.49 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Q 024596 181 EVQALSKEITDLKLSVDLLEKERDFYFAKLRDI 213 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdI 213 (265)
..+.|-+++++|+..|+.||.||-=|=-||+.=
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456899999999999999999999999999876
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.28 E-value=13 Score=26.33 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEKERDFYFAKLRD 212 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRd 212 (265)
..++++|.++..+|+..++.|+.|-.+.=+-|++
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466788899999999999999998876554443
No 57
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.04 E-value=15 Score=28.21 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 024596 181 EVQALSKEITDLKLSVDLLEKERDFYFAKLRD 212 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkERDFYF~KLRd 212 (265)
+...|..|++.|+.....+.+|||.|=.|+-+
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888889999999888754
No 58
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=57.66 E-value=17 Score=29.52 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcC
Q 024596 182 VQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQT 219 (265)
Q Consensus 182 i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~ 219 (265)
.++|..+-.-|-..++.=||||+.||+.|+.+.-=..+
T Consensus 9 leeL~rer~~Ll~EieKEekek~wyysqlq~l~kRi~~ 46 (125)
T 1m5i_A 9 LEELEKERSLLLADLDKEEKEKDWYYAQLQNLTKRIDS 46 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 45666666667777888899999999999987654433
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.61 E-value=20 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024596 178 SAQEVQALSKEITDLKLSVDLLEKERDF 205 (265)
Q Consensus 178 ~~~~i~~L~~q~~elk~~ve~LEkERDF 205 (265)
...+++.|..++.+|+..++.|.++-+=
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999988886543
No 60
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.43 E-value=43 Score=25.13 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHhHHHHH
Q 024596 180 QEVQALSKEITDLKLSVDLL--------EKERDFYF 207 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~L--------EkERDFYF 207 (265)
.+++.|+.|+.+|+-.+|.+ ++-||+|=
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777776666653 44688874
No 61
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.83 E-value=39 Score=21.67 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024596 180 QEVQALSKEITDLKLSVDLL 199 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~L 199 (265)
++|++|..|..-|+.++-.|
T Consensus 14 qDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 34555555555555544443
No 62
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.78 E-value=99 Score=23.35 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhcCC
Q 024596 180 QEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTP 220 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~ 220 (265)
..+.+|.++...|+..|+.|++|=+ .|| ++|.|-+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~----~Lr--~ll~~~p 77 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELS----TLR--NLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHCc
Confidence 3567889999999999999999854 444 3455544
No 63
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=26.66 E-value=97 Score=24.07 Aligned_cols=58 Identities=19% Similarity=0.124 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHhHHHHHHhcC------CCCCCh--------hHHHHHhhhhhc
Q 024596 177 NSAQEVQALSKEITDLKLSVDLLE--KERDFYFAKLRDIEILCQT------PELENL--------PVRISGLLILII 237 (265)
Q Consensus 177 ~~~~~i~~L~~q~~elk~~ve~LE--kERDFYF~KLRdIEiLcQ~------~e~e~~--------~~~~~I~~ILYa 237 (265)
.+...|.++..++.+|.-.|+..+ + +|.=|.+|- |+|.+. .+.+.. ..+++||.+|-.
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k-~dkey~~L~--E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~ 94 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK-TDKAYWLLE--EMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK 94 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT-TSHHHHHHH--HHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHH--HHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888888887765 3 555566664 577663 222221 457888887754
No 64
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=25.17 E-value=34 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.655 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHhhhC
Q 024596 102 DNLEFLQWLKRYCDSVN 118 (265)
Q Consensus 102 dNlEFlQWfk~f~d~n~ 118 (265)
+-|+|+.|+|+|.++.-
T Consensus 96 e~La~~~WlKRfAea~l 112 (114)
T 2zop_A 96 EVLAAAEWFKRFAQALI 112 (114)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46899999999988753
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.98 E-value=54 Score=25.58 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHH
Q 024596 188 EITDLKLSVDLLEKERD 204 (265)
Q Consensus 188 q~~elk~~ve~LEkERD 204 (265)
++..++..++.||+||+
T Consensus 13 ~~~~lr~ei~~Le~E~~ 29 (100)
T 1go4_E 13 EADTLRLKVEELEGERS 29 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555666655
No 66
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=23.36 E-value=1.4e+02 Score=21.90 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHhHHHHHHHhHHHHHH
Q 024596 184 ALSKEITDLKLSVDLL-------EKERDFYFAKLRDIEIL 216 (265)
Q Consensus 184 ~L~~q~~elk~~ve~L-------EkERDFYF~KLRdIEiL 216 (265)
++.+-...|+...++| ..||+|+=.||+.---+
T Consensus 23 AlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~l 62 (70)
T 3brv_B 23 AIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444455566666666 45999999999875443
No 67
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.30 E-value=55 Score=24.50 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEKERDF 205 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEkERDF 205 (265)
.++++.|.+++.||...+..||.|-..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~ 40 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTL 40 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999763
No 68
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.09 E-value=85 Score=21.67 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEK 201 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEk 201 (265)
.+++.+|..++.+|...|+.|..
T Consensus 3 ~aki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 3 NAKADQASSDAQTANAKADQASN 25 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777766
No 69
>2oeb_A Hypothetical protein; unknown function, PSI-2, MCSG, struc genomics, protein structure initiative, midwest center for structural genomics; 1.66A {Archaeoglobus fulgidus} SCOP: a.70.2.1
Probab=22.49 E-value=40 Score=28.07 Aligned_cols=17 Identities=24% Similarity=0.735 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhhhCC
Q 024596 103 NLEFLQWLKRYCDSVNG 119 (265)
Q Consensus 103 NlEFlQWfk~f~d~n~~ 119 (265)
-|+|+.|+|+|.++...
T Consensus 136 ~La~l~WlKRfAea~l~ 152 (155)
T 2oeb_A 136 ALSILNWIKKFAKAMLE 152 (155)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 68899999999998654
No 70
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.88 E-value=1.3e+02 Score=18.72 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024596 181 EVQALSKEITDLKLSVDLL 199 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~L 199 (265)
+|..|.+++..||..+..|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444443
No 71
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.18 E-value=2.1e+02 Score=19.75 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 024596 180 QEVQALSKEITDLKLSVDLLEKERD 204 (265)
Q Consensus 180 ~~i~~L~~q~~elk~~ve~LEkERD 204 (265)
.++..|..+..+|+..++.|+.|-.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777654
No 72
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.07 E-value=77 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 024596 179 AQEVQALSKEITDLKLSVDLLEKER 203 (265)
Q Consensus 179 ~~~i~~L~~q~~elk~~ve~LEkER 203 (265)
.++++.|.+++++|+..++.||++|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888888888776
No 73
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.33 E-value=1.2e+02 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024596 181 EVQALSKEITDLKLSVDLLEKE 202 (265)
Q Consensus 181 ~i~~L~~q~~elk~~ve~LEkE 202 (265)
++.....++.||+.++..|+.|
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888876
No 74
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=20.11 E-value=42 Score=24.13 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=10.1
Q ss_pred HHhHHHHHHhcC
Q 024596 208 AKLRDIEILCQT 219 (265)
Q Consensus 208 ~KLRdIEiLcQ~ 219 (265)
.|||.||+-|=+
T Consensus 16 ~klR~IEvk~me 27 (61)
T 2e62_A 16 QKRRRIEVALIE 27 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999998754
Done!